TMATH_RS00005 SM00382 ATPases associated with a variety of cellular activities TMATH_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain TMATH_RS00010 SM00480 DNA polymerase III beta subunit TMATH_RS00015 SM00363 S4 RNA-binding domain TMATH_RS00045 SM00387 Histidine kinase-like ATPases TMATH_RS00045 SM00433 TopoisomeraseII TMATH_RS00050 SM00434 DNA Topoisomerase IV TMATH_RS00120 SM00487 DEAD-like helicases superfamily TMATH_RS00120 SM00490 helicase superfamily c-terminal domain TMATH_RS00155 SM00881 CoA binding domain TMATH_RS00175 SM01329 TMATH_RS00175 TMATH_RS00255 SM00155 Phospholipase D. Active site motifs. TMATH_RS00265 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS00270 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS00340 SM00858 TMATH_RS00340 TMATH_RS00350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS00430 SM01022 TMATH_RS00430 TMATH_RS00450 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins TMATH_RS00495 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TMATH_RS00495 SM00091 PAS domain TMATH_RS00495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS00495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS00500 SM00382 ATPases associated with a variety of cellular activities TMATH_RS00510 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS00510 SM00493 TMATH_RS00510 TMATH_RS00525 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS00575 SM00363 S4 RNA-binding domain TMATH_RS00630 SM00060 Fibronectin type 3 domain TMATH_RS00630 SM00632 TMATH_RS00630 TMATH_RS00630 SM00642 Alpha-amylase domain TMATH_RS00630 SM01065 Starch binding domain TMATH_RS00645 SM00986 Uracil DNA glycosylase superfamily TMATH_RS00645 SM00987 UreE urease accessory protein, C-terminal domain TMATH_RS00660 SM00382 ATPases associated with a variety of cellular activities TMATH_RS00795 SM00966 SpoVT / AbrB like domain TMATH_RS00825 SM01208 TMATH_RS00825 TMATH_RS00830 SM00650 Ribosomal RNA adenine dimethylases TMATH_RS00875 SM00382 ATPases associated with a variety of cellular activities TMATH_RS00890 SM00900 TMATH_RS00890 TMATH_RS00920 SM00357 Cold shock protein domain TMATH_RS00920 SM00382 ATPases associated with a variety of cellular activities TMATH_RS00920 SM00959 Rho termination factor, N-terminal domain TMATH_RS00945 SM00937 TMATH_RS00945 TMATH_RS00960 SM00226 Low molecular weight phosphatase family TMATH_RS01005 SM01002 Alanine dehydrogenase/PNT, C-terminal domain TMATH_RS01005 SM01003 Alanine dehydrogenase/PNT, N-terminal domain TMATH_RS01080 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01105 SM00858 TMATH_RS01105 TMATH_RS01115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain TMATH_RS01135 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01175 SM01350 TMATH_RS01175 TMATH_RS01255 SM00633 Glycosyl hydrolase family 10 TMATH_RS01275 SM00633 Glycosyl hydrolase family 10 TMATH_RS01300 SM01217 TMATH_RS01300 TMATH_RS01315 SM00354 helix_turn _helix lactose operon repressor TMATH_RS01330 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01370 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01420 SM00635 Bacterial Ig-like domain 2 TMATH_RS01460 SM00344 helix_turn_helix ASNC type TMATH_RS01465 SM00899 TMATH_RS01465 TMATH_RS01485 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01530 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS01645 SM00387 Histidine kinase-like ATPases TMATH_RS01650 SM00342 helix_turn_helix, arabinose operon control protein TMATH_RS01650 SM00448 cheY-homologous receiver domain TMATH_RS01665 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01735 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family TMATH_RS01745 SM01007 Class II Aldolase and Adducin N-terminal domain TMATH_RS01805 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01855 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01910 SM00287 Bacterial SH3 domain homologues TMATH_RS01910 SM00854 Bacterial capsule synthesis protein PGA_cap TMATH_RS01930 SM00354 helix_turn _helix lactose operon repressor TMATH_RS01950 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01955 SM00382 ATPases associated with a variety of cellular activities TMATH_RS01975 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02065 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02175 SM01004 Delta-aminolevulinic acid dehydratase TMATH_RS02190 SM00966 SpoVT / AbrB like domain TMATH_RS02215 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02220 SM01329 TMATH_RS02220 TMATH_RS02240 SM00421 helix_turn_helix, Lux Regulon TMATH_RS02265 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02280 SM00421 helix_turn_helix, Lux Regulon TMATH_RS02290 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS02300 SM00421 helix_turn_helix, Lux Regulon TMATH_RS02325 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02335 SM00421 helix_turn_helix, Lux Regulon TMATH_RS02370 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02410 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02440 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02475 SM00890 Domain of unknown function TMATH_RS02480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS02485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TMATH_RS02485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS02490 SM01221 TMATH_RS02490 TMATH_RS02490 SM01222 TMATH_RS02490 TMATH_RS02505 SM00642 Alpha-amylase domain TMATH_RS02525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS02530 SM00342 helix_turn_helix, arabinose operon control protein TMATH_RS02530 SM00448 cheY-homologous receiver domain TMATH_RS02550 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02565 SM00345 helix_turn_helix gluconate operon transcriptional repressor TMATH_RS02565 SM00866 TMATH_RS02565 TMATH_RS02580 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain TMATH_RS02585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TMATH_RS02605 SM01061 CAT RNA binding domain TMATH_RS02695 SM00354 helix_turn _helix lactose operon repressor TMATH_RS02700 SM00448 cheY-homologous receiver domain TMATH_RS02700 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS02705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS02705 SM00387 Histidine kinase-like ATPases TMATH_RS02705 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS02710 SM00909 Sporulation and spore germination TMATH_RS02770 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS02770 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TMATH_RS02865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS02875 SM00062 Bacterial periplasmic substrate-binding proteins TMATH_RS02875 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. TMATH_RS02885 SM00382 ATPases associated with a variety of cellular activities TMATH_RS02900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS02920 SM00957 SecA DEAD-like domain TMATH_RS02920 SM00958 SecA preprotein cross-linking domain TMATH_RS02925 SM00937 TMATH_RS02925 TMATH_RS02930 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS02930 SM00732 Likely ribonuclease with RNase H fold. TMATH_RS03000 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03015 SM00881 CoA binding domain TMATH_RS03025 SM00448 cheY-homologous receiver domain TMATH_RS03025 SM00850 LytTr DNA-binding domain TMATH_RS03030 SM00387 Histidine kinase-like ATPases TMATH_RS03035 SM00793 Accessory gene regulator B TMATH_RS03060 SM00478 endonuclease III TMATH_RS03095 SM00883 Chaperonin 10 Kd subunit TMATH_RS03110 SM00116 Domain in cystathionine beta-synthase and other proteins. TMATH_RS03110 SM01240 TMATH_RS03110 TMATH_RS03125 SM01001 AIR carboxylase TMATH_RS03140 SM01211 TMATH_RS03140 TMATH_RS03165 SM00798 AICARFT/IMPCHase bienzyme TMATH_RS03165 SM00851 MGS-like domain TMATH_RS03170 SM01209 TMATH_RS03170 TMATH_RS03170 SM01210 TMATH_RS03170 TMATH_RS03190 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS03190 SM00876 Biotin and Thiamin Synthesis associated domain TMATH_RS03230 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS03230 SM00292 breast cancer carboxy-terminal domain TMATH_RS03230 SM00532 Ligase N family TMATH_RS03245 SM00845 GatB domain TMATH_RS03255 SM00646 TMATH_RS03255 TMATH_RS03330 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03405 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03410 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03460 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03460 SM00994 ClpX C4-type zinc finger TMATH_RS03460 SM01086 C-terminal, D2-small domain, of ClpB protein TMATH_RS03465 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03465 SM00464 Found in ATP-dependent protease La (LON) TMATH_RS03505 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03530 SM00382 ATPases associated with a variety of cellular activities TMATH_RS03540 SM00028 Tetratricopeptide repeats TMATH_RS03550 SM00116 Domain in cystathionine beta-synthase and other proteins. TMATH_RS03550 SM00924 MgtE intracellular N domain TMATH_RS03570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TMATH_RS03605 SM00858 TMATH_RS03605 TMATH_RS03800 SM00422 helix_turn_helix, mercury resistance TMATH_RS03825 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. TMATH_RS03825 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TMATH_RS03855 SM00831 Cation transporter/ATPase, N-terminus TMATH_RS03860 SM00562 TMATH_RS03860 TMATH_RS03900 SM01001 AIR carboxylase TMATH_RS03915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS03915 SM00387 Histidine kinase-like ATPases TMATH_RS03915 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS03920 SM00448 cheY-homologous receiver domain TMATH_RS03920 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS03985 SM00354 helix_turn _helix lactose operon repressor TMATH_RS04015 SM00354 helix_turn _helix lactose operon repressor TMATH_RS04050 SM00382 ATPases associated with a variety of cellular activities TMATH_RS04055 SM00257 Lysin motif TMATH_RS04085 SM01130 TMATH_RS04085 TMATH_RS04090 SM00859 Semialdehyde dehydrogenase, NAD binding domain TMATH_RS04100 SM00382 ATPases associated with a variety of cellular activities TMATH_RS04105 SM00382 ATPases associated with a variety of cellular activities TMATH_RS04115 SM01230 TMATH_RS04115 TMATH_RS04120 SM00448 cheY-homologous receiver domain TMATH_RS04120 SM01012 TMATH_RS04120 TMATH_RS04130 SM00345 helix_turn_helix gluconate operon transcriptional repressor TMATH_RS04205 SM00382 ATPases associated with a variety of cellular activities TMATH_RS04220 SM00636 TMATH_RS04220 TMATH_RS04250 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs TMATH_RS04250 SM00475 5'-3' exonuclease TMATH_RS04250 SM00482 DNA polymerase A domain TMATH_RS04285 SM00287 Bacterial SH3 domain homologues TMATH_RS04290 SM00838 Elongation factor G C-terminus TMATH_RS04325 SM00481 DNA polymerase alpha chain like domain TMATH_RS04335 SM00387 Histidine kinase-like ATPases TMATH_RS04345 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TMATH_RS04350 SM00902 Iron hydrogenase small subunit TMATH_RS04350 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TMATH_RS04410 SM00851 MGS-like domain TMATH_RS04425 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS04435 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS04500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS04535 SM00936 Penicillin-binding protein 5, C-terminal domain TMATH_RS04540 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS04610 SM00849 Metallo-beta-lactamase superfamily TMATH_RS04615 SM00849 Metallo-beta-lactamase superfamily TMATH_RS04670 SM00838 Elongation factor G C-terminus TMATH_RS04675 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS04695 SM00271 DnaJ molecular chaperone homology domain TMATH_RS04730 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TMATH_RS04740 SM00448 cheY-homologous receiver domain TMATH_RS04740 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS04745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS04745 SM00387 Histidine kinase-like ATPases TMATH_RS04745 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS04775 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS04810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS04820 SM00014 Acid phosphatase homologues TMATH_RS04830 SM01133 TMATH_RS04830 TMATH_RS04860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS04865 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS04865 SM00357 Cold shock protein domain TMATH_RS04865 SM00955 TMATH_RS04865 TMATH_RS04895 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS04920 SM00382 ATPases associated with a variety of cellular activities TMATH_RS04940 SM00382 ATPases associated with a variety of cellular activities TMATH_RS04960 SM00382 ATPases associated with a variety of cellular activities TMATH_RS05010 SM00419 helix_turn_helix, cAMP Regulatory protein TMATH_RS05040 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS05045 SM00506 Appr-1"-p processing enzyme TMATH_RS05075 SM00849 Metallo-beta-lactamase superfamily TMATH_RS05080 SM00226 Low molecular weight phosphatase family TMATH_RS05090 SM01350 TMATH_RS05090 TMATH_RS05150 SM00257 Lysin motif TMATH_RS05170 SM00448 cheY-homologous receiver domain TMATH_RS05170 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS05175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS05175 SM00387 Histidine kinase-like ATPases TMATH_RS05175 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS05265 SM00881 CoA binding domain TMATH_RS05290 SM00260 Two component signalling adaptor domain TMATH_RS05305 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS05310 SM00382 ATPases associated with a variety of cellular activities TMATH_RS05335 SM01323 TMATH_RS05335 TMATH_RS05365 SM00220 Serine/Threonine protein kinases, catalytic domain TMATH_RS05380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS05380 SM00954 Region found in RelA / SpoT proteins TMATH_RS05390 SM00849 Metallo-beta-lactamase superfamily TMATH_RS05400 SM00382 ATPases associated with a variety of cellular activities TMATH_RS05410 SM00347 helix_turn_helix multiple antibiotic resistance protein TMATH_RS05460 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TMATH_RS05470 SM00732 Likely ribonuclease with RNase H fold. TMATH_RS05485 SM00849 Metallo-beta-lactamase superfamily TMATH_RS05535 SM00382 ATPases associated with a variety of cellular activities TMATH_RS05540 SM00382 ATPases associated with a variety of cellular activities TMATH_RS05585 SM00842 Cell division protein FtsA TMATH_RS05605 SM00518 AP endonuclease family 2 TMATH_RS05610 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase TMATH_RS05630 SM00841 Elongation factor P, C-terminal TMATH_RS05630 SM01185 TMATH_RS05630 TMATH_RS05640 SM00382 ATPases associated with a variety of cellular activities TMATH_RS05715 SM00861 Transketolase, pyrimidine binding domain TMATH_RS05720 SM00363 S4 RNA-binding domain TMATH_RS05745 SM00448 cheY-homologous receiver domain TMATH_RS05795 SM00936 Penicillin-binding protein 5, C-terminal domain TMATH_RS05805 SM00387 Histidine kinase-like ATPases TMATH_RS05870 SM00936 Penicillin-binding protein 5, C-terminal domain TMATH_RS05885 SM00363 S4 RNA-binding domain TMATH_RS05910 SM00257 Lysin motif TMATH_RS05930 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TMATH_RS05940 SM00855 Phosphoglycerate mutase family TMATH_RS05965 SM00563 Phosphate acyltransferases TMATH_RS05980 SM00138 Methyltransferase, chemotaxis proteins TMATH_RS05985 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS05990 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TMATH_RS05990 SM00534 ATPase domain of DNA mismatch repair MUTS family TMATH_RS06030 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06035 SM00998 Adenylosuccinate lyase C-terminus TMATH_RS06045 SM00481 DNA polymerase alpha chain like domain TMATH_RS06060 SM00322 K homology RNA-binding domain TMATH_RS06060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS06070 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06075 SM00852 Probable molybdopterin binding domain TMATH_RS06085 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS06090 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06090 SM00843 TMATH_RS06090 TMATH_RS06130 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS06130 SM00322 K homology RNA-binding domain TMATH_RS06135 SM01387 TMATH_RS06135 TMATH_RS06140 SM00904 Riboflavin kinase TMATH_RS06175 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS06185 SM00479 TMATH_RS06185 TMATH_RS06185 SM00481 DNA polymerase alpha chain like domain TMATH_RS06200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TMATH_RS06270 SM00260 Two component signalling adaptor domain TMATH_RS06275 SM00073 Histidine Phosphotransfer domain TMATH_RS06275 SM00260 Two component signalling adaptor domain TMATH_RS06275 SM00387 Histidine kinase-like ATPases TMATH_RS06275 SM01231 TMATH_RS06275 TMATH_RS06295 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06295 SM00962 SRP54-type protein, GTPase domain TMATH_RS06330 SM00448 cheY-homologous receiver domain TMATH_RS06385 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06425 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06425 SM01086 C-terminal, D2-small domain, of ClpB protein TMATH_RS06435 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain TMATH_RS06435 SM00437 Bacterial DNA topoisomerase I DNA-binding domain TMATH_RS06435 SM00493 TMATH_RS06435 TMATH_RS06465 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06500 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06500 SM00962 SRP54-type protein, GTPase domain TMATH_RS06500 SM00963 SRP54-type protein, helical bundle domain TMATH_RS06510 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06510 SM00962 SRP54-type protein, GTPase domain TMATH_RS06510 SM00963 SRP54-type protein, helical bundle domain TMATH_RS06515 SM00968 SMC proteins Flexible Hinge Domain TMATH_RS06530 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS06545 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS06545 SM00876 Biotin and Thiamin Synthesis associated domain TMATH_RS06580 SM00938 Nitrogen regulatory protein P-II TMATH_RS06590 SM01230 TMATH_RS06590 TMATH_RS06595 SM00358 Double-stranded RNA binding motif TMATH_RS06595 SM00535 Ribonuclease III family TMATH_RS06600 SM00825 Beta-ketoacyl synthase TMATH_RS06605 SM00823 Phosphopantetheine attachment site TMATH_RS06610 SM00822 TMATH_RS06610 TMATH_RS06615 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. TMATH_RS06700 SM00487 DEAD-like helicases superfamily TMATH_RS06700 SM00490 helicase superfamily c-terminal domain TMATH_RS06705 SM01120 TMATH_RS06705 TMATH_RS06705 SM01121 TMATH_RS06705 TMATH_RS06725 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain TMATH_RS06740 SM00220 Serine/Threonine protein kinases, catalytic domain TMATH_RS06740 SM00740 TMATH_RS06740 TMATH_RS06745 SM00331 Sigma factor PP2C-like phosphatases TMATH_RS06745 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain TMATH_RS06780 SM00487 DEAD-like helicases superfamily TMATH_RS06780 SM00490 helicase superfamily c-terminal domain TMATH_RS06790 SM01409 TMATH_RS06790 TMATH_RS06795 SM00072 Guanylate kinase homologues. TMATH_RS06835 SM00382 ATPases associated with a variety of cellular activities TMATH_RS06835 SM00930 TMATH_RS06835 TMATH_RS06885 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase TMATH_RS06910 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family TMATH_RS06935 SM00363 S4 RNA-binding domain TMATH_RS07050 SM00460 Transglutaminase/protease-like homologues TMATH_RS07145 SM01007 Class II Aldolase and Adducin N-terminal domain TMATH_RS07180 SM00363 S4 RNA-binding domain TMATH_RS07240 SM01207 TMATH_RS07240 TMATH_RS07290 SM00382 ATPases associated with a variety of cellular activities TMATH_RS07310 SM00091 PAS domain TMATH_RS07310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS07310 SM00387 Histidine kinase-like ATPases TMATH_RS07310 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS07315 SM00448 cheY-homologous receiver domain TMATH_RS07315 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS07345 SM00864 Tubulin/FtsZ family, GTPase domain TMATH_RS07345 SM00865 Tubulin/FtsZ family, C-terminal domain TMATH_RS07350 SM00842 Cell division protein FtsA TMATH_RS07405 SM00740 TMATH_RS07405 TMATH_RS07450 SM00981 TMATH_RS07450 TMATH_RS07475 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS07495 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS07525 SM00420 helix_turn_helix, Deoxyribose operon repressor TMATH_RS07560 SM00857 Resolvase, N terminal domain TMATH_RS07575 SM00421 helix_turn_helix, Lux Regulon TMATH_RS07575 SM00448 cheY-homologous receiver domain TMATH_RS07580 SM00387 Histidine kinase-like ATPases TMATH_RS07600 SM00463 Small MutS-related domain TMATH_RS07600 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TMATH_RS07600 SM00534 ATPase domain of DNA mismatch repair MUTS family TMATH_RS07615 SM00873 B3/4 domain TMATH_RS07615 SM00874 tRNA synthetase B5 domain TMATH_RS07615 SM00896 Ferredoxin-fold anticodon binding domain TMATH_RS07625 SM00967 RNA 2'-O ribose methyltransferase substrate binding TMATH_RS07655 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TMATH_RS07710 SM00357 Cold shock protein domain TMATH_RS07735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TMATH_RS07830 SM00400 zinc finger TMATH_RS07830 SM00493 TMATH_RS07830 TMATH_RS07835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TMATH_RS07845 SM01192 TMATH_RS07845 TMATH_RS07845 SM01193 TMATH_RS07845 TMATH_RS07865 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TMATH_RS07895 SM01208 TMATH_RS07895 TMATH_RS07900 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS07900 SM00478 endonuclease III TMATH_RS07900 SM00525 TMATH_RS07900 TMATH_RS07925 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS07930 SM00382 ATPases associated with a variety of cellular activities TMATH_RS07955 SM00382 ATPases associated with a variety of cellular activities TMATH_RS07960 SM01207 TMATH_RS07960 TMATH_RS08000 SM01018 B12 binding domain TMATH_RS08090 SM00917 LeuA allosteric (dimerisation) domain TMATH_RS08105 SM00116 Domain in cystathionine beta-synthase and other proteins. TMATH_RS08105 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08110 SM00345 helix_turn_helix gluconate operon transcriptional repressor TMATH_RS08150 SM00481 DNA polymerase alpha chain like domain TMATH_RS08155 SM00116 Domain in cystathionine beta-synthase and other proteins. TMATH_RS08175 SM00642 Alpha-amylase domain TMATH_RS08210 SM00632 TMATH_RS08210 TMATH_RS08210 SM00642 Alpha-amylase domain TMATH_RS08225 SM00481 DNA polymerase alpha chain like domain TMATH_RS08290 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08305 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08325 SM00729 Elongator protein 3, MiaB family, Radical SAM TMATH_RS08325 SM00876 Biotin and Thiamin Synthesis associated domain TMATH_RS08330 SM00849 Metallo-beta-lactamase superfamily TMATH_RS08370 SM00354 helix_turn _helix lactose operon repressor TMATH_RS08380 SM00640 Glycosyl hydrolases family 32 TMATH_RS08435 SM00345 helix_turn_helix gluconate operon transcriptional repressor TMATH_RS08440 SM01007 Class II Aldolase and Adducin N-terminal domain TMATH_RS08460 SM00813 Alpha-L-arabinofuranosidase C-terminus TMATH_RS08465 SM00813 Alpha-L-arabinofuranosidase C-terminus TMATH_RS08495 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08520 SM00872 Alpha mannosidase, middle domain TMATH_RS08525 SM00342 helix_turn_helix, arabinose operon control protein TMATH_RS08560 SM00419 helix_turn_helix, cAMP Regulatory protein TMATH_RS08625 SM01350 TMATH_RS08625 TMATH_RS08645 SM00420 helix_turn_helix, Deoxyribose operon repressor TMATH_RS08645 SM01134 TMATH_RS08645 TMATH_RS08675 SM00354 helix_turn _helix lactose operon repressor TMATH_RS08720 SM00481 DNA polymerase alpha chain like domain TMATH_RS08740 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS08740 SM00465 GIY-YIG type nucleases (URI domain) TMATH_RS08755 SM00240 Forkhead associated domain TMATH_RS08760 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08765 SM00487 DEAD-like helicases superfamily TMATH_RS08765 SM00490 helicase superfamily c-terminal domain TMATH_RS08775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TMATH_RS08780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TMATH_RS08780 SM00245 tail specific protease TMATH_RS08795 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08805 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08845 SM00842 Cell division protein FtsA TMATH_RS08855 SM00382 ATPases associated with a variety of cellular activities TMATH_RS08875 SM01120 TMATH_RS08875 TMATH_RS08885 SM00091 PAS domain TMATH_RS08885 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09030 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09035 SM01068 Putative carbohydrate binding domain TMATH_RS09070 SM00448 cheY-homologous receiver domain TMATH_RS09075 SM00448 cheY-homologous receiver domain TMATH_RS09080 SM00028 Tetratricopeptide repeats TMATH_RS09080 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain TMATH_RS09110 SM00861 Transketolase, pyrimidine binding domain TMATH_RS09155 SM01005 Alanine racemase, C-terminal domain TMATH_RS09185 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS09205 SM00257 Lysin motif TMATH_RS09210 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen TMATH_RS09295 SM00487 DEAD-like helicases superfamily TMATH_RS09340 SM00563 Phosphate acyltransferases TMATH_RS09385 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TMATH_RS09430 SM00646 TMATH_RS09430 TMATH_RS09435 SM00257 Lysin motif TMATH_RS09565 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09570 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09580 SM00662 RNA polymerases D TMATH_RS09585 SM00363 S4 RNA-binding domain TMATH_RS09585 SM01390 TMATH_RS09585 TMATH_RS09605 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS09665 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TMATH_RS09670 SM01374 TMATH_RS09670 TMATH_RS09690 SM00322 K homology RNA-binding domain TMATH_RS09705 SM01382 TMATH_RS09705 TMATH_RS09705 SM01383 TMATH_RS09705 TMATH_RS09725 SM01403 TMATH_RS09725 TMATH_RS09750 SM00967 RNA 2'-O ribose methyltransferase substrate binding TMATH_RS09760 SM00840 TMATH_RS09760 TMATH_RS09800 SM00670 Large family of predicted nucleotide-binding domains TMATH_RS09810 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09820 SM00632 TMATH_RS09820 TMATH_RS09820 SM00642 Alpha-amylase domain TMATH_RS09820 SM01065 Starch binding domain TMATH_RS09840 SM00529 Helix-turn-helix diphteria tox regulatory element TMATH_RS09845 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09845 SM01086 C-terminal, D2-small domain, of ClpB protein TMATH_RS09870 SM00919 Malic enzyme, NAD binding domain TMATH_RS09870 SM01274 TMATH_RS09870 TMATH_RS09875 SM00838 Elongation factor G C-terminus TMATH_RS09875 SM00889 Elongation factor G, domain IV TMATH_RS09885 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TMATH_RS09885 SM00267 diguanylate cyclase TMATH_RS09925 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09935 SM00382 ATPases associated with a variety of cellular activities TMATH_RS09960 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS09980 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS10105 SM00091 PAS domain TMATH_RS10105 SM00387 Histidine kinase-like ATPases TMATH_RS10105 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS10110 SM00382 ATPases associated with a variety of cellular activities TMATH_RS10120 SM00977 TilS substrate C-terminal domain TMATH_RS10125 SM00331 Sigma factor PP2C-like phosphatases TMATH_RS10155 SM00890 Domain of unknown function TMATH_RS10170 SM00646 TMATH_RS10170 TMATH_RS10175 SM00052 Putative diguanylate phosphodiesterase TMATH_RS10175 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TMATH_RS10175 SM00091 PAS domain TMATH_RS10175 SM00267 diguanylate cyclase TMATH_RS10195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TMATH_RS10275 SM00316 Ribosomal protein S1-like RNA-binding domain TMATH_RS10290 SM00116 Domain in cystathionine beta-synthase and other proteins. TMATH_RS10290 SM01131 TMATH_RS10290 TMATH_RS10315 SM00363 S4 RNA-binding domain TMATH_RS10320 SM00411 bacterial (prokaryotic) histone like domain TMATH_RS10330 SM00028 Tetratricopeptide repeats TMATH_RS10330 SM00530 Helix-turn-helix XRE-family like proteins TMATH_RS10340 SM00173 Ras subfamily of RAS small GTPases TMATH_RS10355 SM00900 TMATH_RS10355 TMATH_RS10390 SM00855 Phosphoglycerate mutase family TMATH_RS10400 SM00831 Cation transporter/ATPase, N-terminus TMATH_RS10415 SM00382 ATPases associated with a variety of cellular activities TMATH_RS10420 SM00345 helix_turn_helix gluconate operon transcriptional repressor TMATH_RS10435 SM00966 SpoVT / AbrB like domain TMATH_RS10450 SM00851 MGS-like domain TMATH_RS10450 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TMATH_RS10455 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain TMATH_RS10475 SM00859 Semialdehyde dehydrogenase, NAD binding domain TMATH_RS10480 SM00331 Sigma factor PP2C-like phosphatases TMATH_RS10485 SM00091 PAS domain TMATH_RS10495 SM00829 Enoylreductase TMATH_RS10510 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TMATH_RS10510 SM00481 DNA polymerase alpha chain like domain TMATH_RS10510 SM00483 DNA polymerase X family TMATH_RS10535 SM00831 Cation transporter/ATPase, N-terminus TMATH_RS10540 SM00014 Acid phosphatase homologues TMATH_RS10550 SM00382 ATPases associated with a variety of cellular activities TMATH_RS10555 SM00382 ATPases associated with a variety of cellular activities TMATH_RS10560 SM00347 helix_turn_helix multiple antibiotic resistance protein TMATH_RS10605 SM00382 ATPases associated with a variety of cellular activities TMATH_RS10610 SM00382 ATPases associated with a variety of cellular activities TMATH_RS10620 SM00836 DALR anticodon binding domain TMATH_RS10620 SM01016 Arginyl tRNA synthetase N terminal dom TMATH_RS10680 SM00345 helix_turn_helix gluconate operon transcriptional repressor TMATH_RS10680 SM00895 TMATH_RS10680 TMATH_RS10690 SM00257 Lysin motif TMATH_RS10705 SM00966 SpoVT / AbrB like domain TMATH_RS10715 SM00487 DEAD-like helicases superfamily TMATH_RS10715 SM00490 helicase superfamily c-terminal domain TMATH_RS10715 SM00982 TMATH_RS10715 TMATH_RS10715 SM01058 CarD-like/TRCF domain TMATH_RS10730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TMATH_RS10735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS10735 SM00387 Histidine kinase-like ATPases TMATH_RS10735 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS10740 SM00448 cheY-homologous receiver domain TMATH_RS10740 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS10745 SM01400 TMATH_RS10745 TMATH_RS10780 SM00354 helix_turn _helix lactose operon repressor TMATH_RS10820 SM00420 helix_turn_helix, Deoxyribose operon repressor TMATH_RS10820 SM01134 TMATH_RS10820 TMATH_RS10840 SM00287 Bacterial SH3 domain homologues TMATH_RS10845 SM00670 Large family of predicted nucleotide-binding domains TMATH_RS10865 SM00849 Metallo-beta-lactamase superfamily TMATH_RS10865 SM01027 Beta-Casp domain TMATH_RS10880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TMATH_RS10880 SM00245 tail specific protease TMATH_RS10910 SM00849 Metallo-beta-lactamase superfamily TMATH_RS10970 SM00487 DEAD-like helicases superfamily TMATH_RS11000 SM00636 TMATH_RS11000 TMATH_RS11025 SM00382 ATPases associated with a variety of cellular activities TMATH_RS11030 SM00883 Chaperonin 10 Kd subunit TMATH_RS11065 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TMATH_RS11090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS11090 SM00387 Histidine kinase-like ATPases TMATH_RS11090 SM00388 His Kinase A (phosphoacceptor) domain TMATH_RS11095 SM00448 cheY-homologous receiver domain TMATH_RS11095 SM00862 Transcriptional regulatory protein, C terminal TMATH_RS11105 SM00257 Lysin motif TMATH_RS11105 SM01208 TMATH_RS11105 TMATH_RS11115 SM00382 ATPases associated with a variety of cellular activities TMATH_RS11130 SM00849 Metallo-beta-lactamase superfamily TMATH_RS11145 SM00788 Adenylosuccinate synthetase TMATH_RS11155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TMATH_RS11155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TMATH_RS11200 SM00382 ATPases associated with a variety of cellular activities TMATH_RS11270 SM00100 Cyclic nucleotide-monophosphate binding domain TMATH_RS11270 SM00419 helix_turn_helix, cAMP Regulatory protein TMATH_RS11275 SM00382 ATPases associated with a variety of cellular activities TMATH_RS11350 SM00470 ParB-like nuclease domain TMATH_RS11360 SM00470 ParB-like nuclease domain TMATH_RS11375 SM01228 TMATH_RS11375 TMATH_RS11385 SM00393 Putative single-stranded nucleic acids-binding domain TMATH_RS11385 SM01245 TMATH_RS11385 TMATH_RS11395 SM01234 TMATH_RS11395 TMATH_RS11465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TMATH_RS11465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TMATH_RS11465 SM00091 PAS domain TMATH_RS11465 SM00387 Histidine kinase-like ATPases TMATH_RS11470 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain TMATH_RS11490 SM00857 Resolvase, N terminal domain