HL41_RS00050	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS00070	SM00382	ATPases associated with a variety of cellular activities
HL41_RS00145	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS00165	SM00825	Beta-ketoacyl synthase
HL41_RS00195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_RS00195	SM00387	Histidine kinase-like ATPases
HL41_RS00195	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS00225	SM00318	Staphylococcal nuclease homologues
HL41_RS00270	SM00481	DNA polymerase alpha chain like domain
HL41_RS00320	SM00357	Cold shock protein domain
HL41_RS00330	SM00387	Histidine kinase-like ATPases
HL41_RS00330	SM00448	cheY-homologous receiver domain
HL41_RS00365	SM00841	Elongation factor P, C-terminal
HL41_RS00365	SM01185	HL41_RS00365
HL41_RS00380	SM00267	diguanylate cyclase
HL41_RS00395	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS00420	SM00878	Biotin carboxylase C-terminal domain
HL41_RS00445	SM00382	ATPases associated with a variety of cellular activities
HL41_RS00445	SM00962	SRP54-type protein, GTPase domain
HL41_RS00445	SM00963	SRP54-type protein, helical bundle domain
HL41_RS00465	SM01007	Class II Aldolase and Adducin N-terminal domain
HL41_RS00485	SM00382	ATPases associated with a variety of cellular activities
HL41_RS00505	SM00382	ATPases associated with a variety of cellular activities
HL41_RS00540	SM00382	ATPases associated with a variety of cellular activities
HL41_RS00605	SM01005	Alanine racemase, C-terminal domain
HL41_RS00665	SM01211	HL41_RS00665
HL41_RS00675	SM00411	bacterial (prokaryotic) histone like domain
HL41_RS00680	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
HL41_RS00680	SM01232	HL41_RS00680
HL41_RS00690	SM00834	Putative regulatory protein
HL41_RS00705	SM01400	HL41_RS00705
HL41_RS00790	SM00919	Malic enzyme, NAD binding domain
HL41_RS00790	SM01274	HL41_RS00790
HL41_RS00820	SM00986	Uracil DNA glycosylase superfamily
HL41_RS00820	SM00987	UreE urease accessory protein, C-terminal domain 
HL41_RS00850	SM00450	Rhodanese Homology Domain
HL41_RS00880	SM00072	Guanylate kinase homologues.
HL41_RS00885	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HL41_RS00895	SM00481	DNA polymerase alpha chain like domain
HL41_RS00915	SM00382	ATPases associated with a variety of cellular activities
HL41_RS00935	SM00858	HL41_RS00935
HL41_RS00990	SM00028	Tetratricopeptide repeats
HL41_RS00995	SM00849	Metallo-beta-lactamase superfamily
HL41_RS01110	SM01131	HL41_RS01110
HL41_RS01150	SM00836	DALR anticodon binding domain
HL41_RS01150	SM01016	Arginyl tRNA synthetase N terminal dom
HL41_RS01180	SM00893	Electron transfer flavoprotein domain
HL41_RS01185	SM00893	Electron transfer flavoprotein domain
HL41_RS01210	SM00382	ATPases associated with a variety of cellular activities
HL41_RS01245	SM00861	Transketolase, pyrimidine binding domain
HL41_RS01250	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS01250	SM00954	Region found in RelA / SpoT proteins
HL41_RS01260	SM01209	HL41_RS01260
HL41_RS01260	SM01210	HL41_RS01260
HL41_RS01265	SM01001	AIR carboxylase
HL41_RS01335	SM01209	HL41_RS01335
HL41_RS01350	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS01360	SM00382	ATPases associated with a variety of cellular activities
HL41_RS01370	SM00493	HL41_RS01370
HL41_RS01440	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS01480	SM00322	K homology RNA-binding domain
HL41_RS01480	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS01505	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS01545	SM01207	HL41_RS01545
HL41_RS01560	SM00977	TilS substrate C-terminal domain
HL41_RS01670	SM01323	HL41_RS01670
HL41_RS01745	SM00387	Histidine kinase-like ATPases
HL41_RS01745	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS01750	SM00382	ATPases associated with a variety of cellular activities
HL41_RS01750	SM00448	cheY-homologous receiver domain
HL41_RS01760	SM00465	GIY-YIG type nucleases (URI domain)
HL41_RS01765	SM01329	HL41_RS01765
HL41_RS01790	SM01228	HL41_RS01790
HL41_RS01820	SM00028	Tetratricopeptide repeats
HL41_RS01825	SM00930	HL41_RS01825
HL41_RS01830	SM00382	ATPases associated with a variety of cellular activities
HL41_RS01835	SM00382	ATPases associated with a variety of cellular activities
HL41_RS01850	SM00487	DEAD-like helicases superfamily
HL41_RS01850	SM00490	helicase superfamily c-terminal domain
HL41_RS01860	SM00382	ATPases associated with a variety of cellular activities
HL41_RS01860	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_RS01870	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS01875	SM00851	MGS-like domain
HL41_RS01900	SM00849	Metallo-beta-lactamase superfamily
HL41_RS01905	SM00984	UDP binding domain
HL41_RS01915	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_RS01915	SM00481	DNA polymerase alpha chain like domain
HL41_RS01915	SM00483	DNA polymerase X family
HL41_RS01935	SM00387	Histidine kinase-like ATPases
HL41_RS01935	SM00433	TopoisomeraseII
HL41_RS01940	SM00480	DNA polymerase III beta subunit
HL41_RS01970	SM00830	Chorismate mutase type II
HL41_RS01980	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_RS01980	SM00322	K homology RNA-binding domain
HL41_RS02000	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02000	SM00448	cheY-homologous receiver domain
HL41_RS02055	SM01230	HL41_RS02055
HL41_RS02060	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HL41_RS02060	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02070	SM00938	Nitrogen regulatory protein P-II
HL41_RS02130	SM00849	Metallo-beta-lactamase superfamily
HL41_RS02170	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02175	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02180	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02180	SM00760	Bacterial dnaA protein helix-turn-helix domain
HL41_RS02200	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02200	SM00448	cheY-homologous receiver domain
HL41_RS02220	SM00052	Putative diguanylate phosphodiesterase
HL41_RS02255	SM01004	Delta-aminolevulinic acid dehydratase
HL41_RS02265	SM00358	Double-stranded RNA binding motif
HL41_RS02265	SM00535	Ribonuclease III family
HL41_RS02280	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS02300	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS02305	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
HL41_RS02330	SM00052	Putative diguanylate phosphodiesterase
HL41_RS02330	SM00267	diguanylate cyclase
HL41_RS02345	SM00470	ParB-like nuclease domain
HL41_RS02355	SM00959	Rho termination factor, N-terminal domain
HL41_RS02415	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02430	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HL41_RS02460	SM00507	HNH nucleases
HL41_RS02470	SM00138	Methyltransferase, chemotaxis proteins 
HL41_RS02475	SM00448	cheY-homologous receiver domain
HL41_RS02480	SM00448	cheY-homologous receiver domain
HL41_RS02500	SM00448	cheY-homologous receiver domain
HL41_RS02515	SM00962	SRP54-type protein, GTPase domain
HL41_RS02605	SM00859	Semialdehyde dehydrogenase, NAD binding domain
HL41_RS02625	SM00271	DnaJ molecular chaperone homology domain
HL41_RS02665	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02675	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02700	SM00506	Appr-1"-p processing enzyme
HL41_RS02710	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS02725	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS02725	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_RS02730	SM00849	Metallo-beta-lactamase superfamily
HL41_RS02735	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS02780	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02795	SM00052	Putative diguanylate phosphodiesterase
HL41_RS02795	SM00267	diguanylate cyclase
HL41_RS02805	SM00849	Metallo-beta-lactamase superfamily
HL41_RS02840	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS02840	SM01091	Transporter associated domain
HL41_RS02860	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS02860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_RS02885	SM00260	Two component signalling adaptor domain
HL41_RS02890	SM00073	Histidine Phosphotransfer domain
HL41_RS02890	SM00260	Two component signalling adaptor domain
HL41_RS02890	SM00387	Histidine kinase-like ATPases
HL41_RS02890	SM00448	cheY-homologous receiver domain
HL41_RS02890	SM01231	HL41_RS02890
HL41_RS02900	SM00363	S4 RNA-binding domain
HL41_RS02930	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_RS02955	SM00382	ATPases associated with a variety of cellular activities
HL41_RS02970	SM00788	Adenylosuccinate synthetase
HL41_RS02975	SM00878	Biotin carboxylase C-terminal domain
HL41_RS02995	SM00851	MGS-like domain
HL41_RS02995	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HL41_RS03085	SM00382	ATPases associated with a variety of cellular activities
HL41_RS03110	SM00487	DEAD-like helicases superfamily
HL41_RS03110	SM00490	helicase superfamily c-terminal domain
HL41_RS03110	SM00982	HL41_RS03110
HL41_RS03110	SM01058	CarD-like/TRCF domain
HL41_RS03115	SM00052	Putative diguanylate phosphodiesterase
HL41_RS03115	SM00091	PAS domain
HL41_RS03115	SM00267	diguanylate cyclase
HL41_RS03205	SM00028	Tetratricopeptide repeats
HL41_RS03225	SM01091	Transporter associated domain
HL41_RS03270	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_RS03270	SM00357	Cold shock protein domain
HL41_RS03270	SM00955	HL41_RS03270
HL41_RS03280	SM00845	GatB domain
HL41_RS03305	SM00834	Putative regulatory protein
HL41_RS03315	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HL41_RS03335	SM00903	Flavin reductase like domain
HL41_RS03375	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS03395	SM00014	Acid phosphatase homologues
HL41_RS03405	SM00382	ATPases associated with a variety of cellular activities
HL41_RS03420	SM00834	Putative regulatory protein
HL41_RS03430	SM00562	HL41_RS03430
HL41_RS03445	SM00382	ATPases associated with a variety of cellular activities
HL41_RS03445	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_RS03475	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
HL41_RS03490	SM00507	HNH nucleases
HL41_RS03535	SM00834	Putative regulatory protein
HL41_RS03555	SM00382	ATPases associated with a variety of cellular activities
HL41_RS03570	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_RS03570	SM00292	breast cancer carboxy-terminal domain
HL41_RS03570	SM00532	Ligase N family
HL41_RS03615	SM00487	DEAD-like helicases superfamily
HL41_RS03615	SM00490	helicase superfamily c-terminal domain
HL41_RS03620	SM00838	Elongation factor G C-terminus
HL41_RS03620	SM00889	Elongation factor G, domain IV
HL41_RS03625	SM00852	Probable molybdopterin binding domain
HL41_RS03680	SM00858	HL41_RS03680
HL41_RS03690	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS03710	SM00028	Tetratricopeptide repeats
HL41_RS03725	SM00487	DEAD-like helicases superfamily
HL41_RS03725	SM00490	helicase superfamily c-terminal domain
HL41_RS03750	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS03780	SM00487	DEAD-like helicases superfamily
HL41_RS03780	SM00490	helicase superfamily c-terminal domain
HL41_RS03830	SM01230	HL41_RS03830
HL41_RS03840	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HL41_RS03840	SM00382	ATPases associated with a variety of cellular activities
HL41_RS03885	SM00267	diguanylate cyclase
HL41_RS03890	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS03925	SM01234	HL41_RS03925
HL41_RS03935	SM01245	HL41_RS03935
HL41_RS03960	SM00470	ParB-like nuclease domain
HL41_RS03990	SM00852	Probable molybdopterin binding domain
HL41_RS04045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS04060	SM00028	Tetratricopeptide repeats
HL41_RS04085	SM00463	Small MutS-related domain
HL41_RS04085	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HL41_RS04085	SM00534	ATPase domain of DNA mismatch repair MUTS family
HL41_RS04095	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04105	SM00849	Metallo-beta-lactamase superfamily
HL41_RS04105	SM01027	Beta-Casp domain
HL41_RS04130	SM01329	HL41_RS04130
HL41_RS04180	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
HL41_RS04270	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04285	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_RS04295	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_RS04295	SM00322	K homology RNA-binding domain
HL41_RS04310	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
HL41_RS04320	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_RS04320	SM00245	tail specific protease
HL41_RS04340	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04360	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04400	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
HL41_RS04420	SM01152	HL41_RS04420
HL41_RS04445	SM00267	diguanylate cyclase
HL41_RS04445	SM00448	cheY-homologous receiver domain
HL41_RS04460	SM00883	Chaperonin 10 Kd subunit
HL41_RS04470	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04470	SM00464	Found in ATP-dependent protease La (LON)
HL41_RS04500	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS04510	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04510	SM00448	cheY-homologous receiver domain
HL41_RS04515	SM00387	Histidine kinase-like ATPases
HL41_RS04515	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS04525	SM00487	DEAD-like helicases superfamily
HL41_RS04525	SM00490	helicase superfamily c-terminal domain
HL41_RS04545	SM00478	endonuclease III
HL41_RS04545	SM00525	HL41_RS04545
HL41_RS04555	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HL41_RS04570	SM00996	S-adenosyl-L-homocysteine hydrolase
HL41_RS04570	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
HL41_RS04595	SM00470	ParB-like nuclease domain
HL41_RS04600	SM00864	Tubulin/FtsZ family, GTPase domain
HL41_RS04600	SM00865	Tubulin/FtsZ family, C-terminal domain
HL41_RS04605	SM00842	Cell division protein FtsA
HL41_RS04680	SM00849	Metallo-beta-lactamase superfamily
HL41_RS04750	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS04775	SM00798	AICARFT/IMPCHase bienzyme
HL41_RS04815	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04835	SM01409	HL41_RS04835
HL41_RS04840	SM00271	DnaJ molecular chaperone homology domain
HL41_RS04855	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04870	SM00363	S4 RNA-binding domain
HL41_RS04875	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
HL41_RS04875	SM00475	5'-3' exonuclease
HL41_RS04875	SM00482	DNA polymerase A domain
HL41_RS04880	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS04900	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_RS04935	SM00382	ATPases associated with a variety of cellular activities
HL41_RS04935	SM00843	HL41_RS04935
HL41_RS04950	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
HL41_RS05000	SM00853	MutL C terminal dimerisation domain
HL41_RS05000	SM01340	HL41_RS05000
HL41_RS05005	SM00670	Large family of predicted nucleotide-binding domains
HL41_RS05035	SM00955	HL41_RS05035
HL41_RS05060	SM00357	Cold shock protein domain
HL41_RS05060	SM00382	ATPases associated with a variety of cellular activities
HL41_RS05060	SM00959	Rho termination factor, N-terminal domain
HL41_RS05095	SM00382	ATPases associated with a variety of cellular activities
HL41_RS05095	SM00464	Found in ATP-dependent protease La (LON)
HL41_RS05100	SM00382	ATPases associated with a variety of cellular activities
HL41_RS05100	SM00994	ClpX C4-type zinc finger
HL41_RS05100	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_RS05125	SM00662	RNA polymerases D
HL41_RS05130	SM00363	S4 RNA-binding domain
HL41_RS05130	SM01390	HL41_RS05130
HL41_RS05210	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HL41_RS05215	SM01374	HL41_RS05215
HL41_RS05235	SM00322	K homology RNA-binding domain
HL41_RS05250	SM01382	HL41_RS05250
HL41_RS05250	SM01383	HL41_RS05250
HL41_RS05270	SM01403	HL41_RS05270
HL41_RS05280	SM00838	Elongation factor G C-terminus
HL41_RS05280	SM00889	Elongation factor G, domain IV
HL41_RS05295	SM00382	ATPases associated with a variety of cellular activities
HL41_RS05330	SM00271	DnaJ molecular chaperone homology domain
HL41_RS05395	SM00271	DnaJ molecular chaperone homology domain
HL41_RS05405	SM00917	LeuA allosteric (dimerisation) domain
HL41_RS05415	SM00840	HL41_RS05415
HL41_RS05435	SM00859	Semialdehyde dehydrogenase, NAD binding domain
HL41_RS05455	SM00244	prohibitin homologues
HL41_RS05475	SM00861	Transketolase, pyrimidine binding domain
HL41_RS05505	SM00382	ATPases associated with a variety of cellular activities
HL41_RS05520	SM00834	Putative regulatory protein
HL41_RS05525	SM00028	Tetratricopeptide repeats
HL41_RS05535	SM00028	Tetratricopeptide repeats
HL41_RS05545	SM00650	Ribosomal RNA adenine dimethylases
HL41_RS05560	SM00822	HL41_RS05560
HL41_RS05570	SM00028	Tetratricopeptide repeats
HL41_RS05570	SM00671	Sel1-like repeats.
HL41_RS05575	SM00917	LeuA allosteric (dimerisation) domain
HL41_RS05590	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS05630	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_RS05650	SM00903	Flavin reductase like domain
HL41_RS05655	SM00028	Tetratricopeptide repeats
HL41_RS05675	SM00363	S4 RNA-binding domain
HL41_RS05690	SM00904	Riboflavin kinase
HL41_RS05695	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
HL41_RS05710	SM00849	Metallo-beta-lactamase superfamily
HL41_RS05735	SM00411	bacterial (prokaryotic) histone like domain
HL41_RS05740	SM00873	B3/4 domain
HL41_RS05740	SM00874	tRNA synthetase B5 domain
HL41_RS05740	SM00896	Ferredoxin-fold anticodon binding domain
HL41_RS05765	SM00382	ATPases associated with a variety of cellular activities
HL41_RS05795	SM00899	HL41_RS05795
HL41_RS05800	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS05805	SM00267	diguanylate cyclase
HL41_RS05805	SM00899	HL41_RS05805
HL41_RS05810	SM00899	HL41_RS05810
HL41_RS05920	SM00881	CoA binding domain
HL41_RS05970	SM00448	cheY-homologous receiver domain
HL41_RS05970	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS06015	SM00957	SecA DEAD-like domain
HL41_RS06015	SM00958	SecA preprotein cross-linking domain
HL41_RS06180	SM00028	Tetratricopeptide repeats
HL41_RS06190	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HL41_RS06210	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
HL41_RS06240	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HL41_RS06240	SM00534	ATPase domain of DNA mismatch repair MUTS family
HL41_RS06255	SM00267	diguanylate cyclase
HL41_RS06270	SM00382	ATPases associated with a variety of cellular activities
HL41_RS06320	SM00831	Cation transporter/ATPase, N-terminus
HL41_RS06325	SM00382	ATPases associated with a variety of cellular activities
HL41_RS06335	SM01192	HL41_RS06335
HL41_RS06335	SM01193	HL41_RS06335
HL41_RS06370	SM01078	HL41_RS06370
HL41_RS06375	SM00382	ATPases associated with a variety of cellular activities
HL41_RS06405	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS06405	SM01240	HL41_RS06405
HL41_RS06410	SM00411	bacterial (prokaryotic) histone like domain
HL41_RS06420	SM00316	Ribosomal protein S1-like RNA-binding domain
HL41_RS06440	SM00267	diguanylate cyclase
HL41_RS06550	SM00382	ATPases associated with a variety of cellular activities
HL41_RS06550	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
HL41_RS06550	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
HL41_RS06550	SM00487	DEAD-like helicases superfamily
HL41_RS06550	SM00493	HL41_RS06550
HL41_RS06560	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS06610	SM00530	Helix-turn-helix XRE-family like proteins 
HL41_RS06615	SM00530	Helix-turn-helix XRE-family like proteins 
HL41_RS06655	SM00382	ATPases associated with a variety of cellular activities
HL41_RS06860	SM00267	diguanylate cyclase
HL41_RS06860	SM00448	cheY-homologous receiver domain
HL41_RS06865	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS06870	SM00268	Actin
HL41_RS06875	SM00746	metallochaperone-like domain
HL41_RS06895	SM00434	DNA Topoisomerase IV
HL41_RS06900	SM00563	Phosphate acyltransferases
HL41_RS06920	SM00450	Rhodanese Homology Domain
HL41_RS06950	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS06965	SM00387	Histidine kinase-like ATPases
HL41_RS06965	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS06970	SM00382	ATPases associated with a variety of cellular activities
HL41_RS06970	SM00448	cheY-homologous receiver domain
HL41_RS07020	SM00881	CoA binding domain
HL41_RS07100	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS07120	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS07135	SM00478	endonuclease III
HL41_RS07145	SM00257	Lysin motif
HL41_RS07180	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_RS07270	SM01204	HL41_RS07270
HL41_RS07275	SM00267	diguanylate cyclase
HL41_RS07305	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HL41_RS07375	SM00935	Outer membrane protein (OmpH-like)
HL41_RS07400	SM00487	DEAD-like helicases superfamily
HL41_RS07400	SM00490	helicase superfamily c-terminal domain
HL41_RS07445	SM00487	DEAD-like helicases superfamily
HL41_RS07445	SM00490	helicase superfamily c-terminal domain
HL41_RS07490	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS07510	SM00899	HL41_RS07510
HL41_RS07530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS07570	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS07580	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS07590	SM00382	ATPases associated with a variety of cellular activities
HL41_RS07595	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
HL41_RS07595	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
HL41_RS07595	SM00493	HL41_RS07595
HL41_RS07625	SM01130	HL41_RS07625
HL41_RS07635	SM00100	Cyclic nucleotide-monophosphate binding domain
HL41_RS07635	SM00419	helix_turn_helix, cAMP Regulatory protein
HL41_RS07640	SM00226	Low molecular weight phosphatase family
HL41_RS07650	SM00267	diguanylate cyclase
HL41_RS07655	SM00052	Putative diguanylate phosphodiesterase
HL41_RS07665	SM00481	DNA polymerase alpha chain like domain
HL41_RS07680	SM00487	DEAD-like helicases superfamily
HL41_RS07680	SM00490	helicase superfamily c-terminal domain
HL41_RS07705	SM00937	HL41_RS07705
HL41_RS07720	SM00567	E-Z type HEAT repeats
HL41_RS07730	SM00028	Tetratricopeptide repeats
HL41_RS07740	SM00028	Tetratricopeptide repeats
HL41_RS07840	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS07850	SM00852	Probable molybdopterin binding domain
HL41_RS07860	SM00091	PAS domain
HL41_RS07860	SM00382	ATPases associated with a variety of cellular activities
HL41_RS07865	SM00091	PAS domain
HL41_RS07865	SM00387	Histidine kinase-like ATPases
HL41_RS07865	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS07870	SM00448	cheY-homologous receiver domain
HL41_RS07880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HL41_RS07880	SM00866	HL41_RS07880
HL41_RS07950	SM00382	ATPases associated with a variety of cellular activities
HL41_RS07970	SM00448	cheY-homologous receiver domain
HL41_RS07970	SM00862	Transcriptional regulatory protein, C terminal
HL41_RS07975	SM00387	Histidine kinase-like ATPases
HL41_RS07975	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS08015	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08015	SM00962	SRP54-type protein, GTPase domain
HL41_RS08015	SM00963	SRP54-type protein, helical bundle domain
HL41_RS08030	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
HL41_RS08045	SM00902	Iron hydrogenase small subunit
HL41_RS08045	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
HL41_RS08065	SM00876	Biotin and Thiamin Synthesis associated domain
HL41_RS08080	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS08080	SM00876	Biotin and Thiamin Synthesis associated domain
HL41_RS08095	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS08100	SM00479	HL41_RS08100
HL41_RS08105	SM00100	Cyclic nucleotide-monophosphate binding domain
HL41_RS08105	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS08195	SM00852	Probable molybdopterin binding domain
HL41_RS08215	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
HL41_RS08265	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
HL41_RS08340	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HL41_RS08340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_RS08345	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08345	SM00448	cheY-homologous receiver domain
HL41_RS08350	SM00387	Histidine kinase-like ATPases
HL41_RS08350	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS08355	SM00062	Bacterial periplasmic substrate-binding proteins
HL41_RS08440	SM00998	Adenylosuccinate lyase C-terminus
HL41_RS08470	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08585	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HL41_RS08590	SM00649	Ribosomal protein L11/L12
HL41_RS08615	SM00663	RNA polymerase I subunit A N-terminus
HL41_RS08620	SM01387	HL41_RS08620
HL41_RS08625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HL41_RS08670	SM00729	Elongator protein 3, MiaB family, Radical SAM
HL41_RS08675	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08675	SM01086	C-terminal, D2-small domain, of ClpB protein
HL41_RS08685	SM00829	Enoylreductase
HL41_RS08705	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08715	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08720	SM00327	von Willebrand factor (vWF) type A domain
HL41_RS08720	SM00382	ATPases associated with a variety of cellular activities
HL41_RS08745	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS08860	SM00450	Rhodanese Homology Domain
HL41_RS08875	SM00091	PAS domain
HL41_RS08875	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS08875	SM00267	diguanylate cyclase
HL41_RS08895	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HL41_RS08915	SM00749	bacterial OsmY and nodulation domain
HL41_RS08935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HL41_RS08935	SM00387	Histidine kinase-like ATPases
HL41_RS08935	SM00388	His Kinase A (phosphoacceptor) domain
HL41_RS08995	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS08995	SM00267	diguanylate cyclase
HL41_RS09020	SM00421	helix_turn_helix, Lux Regulon
HL41_RS09030	SM00267	diguanylate cyclase
HL41_RS09035	SM00400	zinc finger
HL41_RS09035	SM00493	HL41_RS09035
HL41_RS09055	SM00267	diguanylate cyclase
HL41_RS09060	SM00267	diguanylate cyclase
HL41_RS09070	SM00450	Rhodanese Homology Domain
HL41_RS09075	SM00422	helix_turn_helix, mercury resistance
HL41_RS09105	SM00257	Lysin motif
HL41_RS09105	SM00646	HL41_RS09105
HL41_RS09170	SM00116	Domain in cystathionine beta-synthase and other proteins.
HL41_RS09185	SM00902	Iron hydrogenase small subunit
HL41_RS09195	SM00463	Small MutS-related domain
HL41_RS09205	SM00257	Lysin motif
