 THEYE_A0003    2844 ..    2861 + -12.7  -5.60993   AATTTCTTTTATAAA             GGGGCAG GAAA CTGCCCC              TTTTTTTCTACCGAA 100 39
 THEYE_A0004 NONE
 THEYE_A0005 NONE
 THEYE_A0006 NONE
 THEYE_A0007 NONE
 THEYE_A0008 NONE
 THEYE_A0009    8460 ..    8490 + -15.6  -4.53419   ATTGGTTATAACTAA       TAGAGAAGCGGGAG ACA TTCTCGCTTCTCTA       TTTATTCTTCTCGTA 100 48
         lnt   12592 ..   12604 +  -4.1  -3.82946   TTAAAGAAAAAATTT                TCTCT TTA AGAGG                TTGTCTTTGAAATAG  56 59
 THEYE_A0013   13647 ..   13657 +  -2.6  -5.55769   GTTTGCTTCAATTTC                 TTAA TTT TTAA                 TTTTTTGTTATAGAA  75 22
 THEYE_A0014   13939 ..   13953 +  -3.6  -4.59511   TTTTAATTTAACAGG               CTTTTA ACA TAGAAG               TTTTTAACAAGTGTT  63 159
        dnaA NONE
        dnaN NONE
        gyrB NONE
        serS NONE
 THEYE_A0019 NONE
 THEYE_A0020 NONE
        trpC NONE
 THEYE_A0022 NONE
 THEYE_A0023 NONE
 THEYE_A0024   25816 ..   25861 + -16.5  -2.75825   AGAAAGTTTAAAACT ATAGTTTGTTAGAAATGTTCC ACGT GGAACATTTCTAACAAACTCC TCCCTTTGTTACAAG 100 30
 THEYE_A0028   29496 ..   29526 +  -9.8  -2.93765   ATTTAATGATATTTT       TAGGGGAGAAAG CAGAAAA CCTTCTCCCCTA       TGCTTAATTATTTTC  75 62
 THEYE_A0043 NONE
 THEYE_A0044 NONE
 THEYE_A0045 NONE
        glmM   53308 ..   53328 +  -5.5  -3.01924   TCTTTAGTCCATAGG            CAACATTTT TAA AAACTGTTG            TATTAAAAACCCCTA  54 427
 THEYE_A0053 NONE
        xerD NONE
 THEYE_A0055   59039 ..   59071 + -12.9  -5.10029   AGCAGGTTAAATAGG      CTTGCAGTTTCTTGA TTT TCAGGGAATTGCAAG      TTTTTTAAAATTCAT 100 40
 THEYE_A0056 NONE
 THEYE_A0057   60876 ..   60888 +  -2.7  -4.88293   GGCAATGAGAGAGTT                CTTTA TTA TAGAG                TTTATTTTTGAGATT  66 187
 THEYE_A0058   62051 ..   62075 +  -7.1  -2.88663   TCCAACATAAAGAAC          CCTTTGAGCCG AAA TGGCTCAGAGA          TCTCTCGCAATCCCT  63 154
      csm1_1 NONE
      csm2_1 NONE
      csm3_1 NONE
        csm4 NONE
      csm5_1 NONE
 THEYE_A0065 NONE
 THEYE_A0066 NONE
 THEYE_A0067 NONE
      cas6_1 NONE
 THEYE_A0069 NONE
        hisH NONE
        selB NONE
 THEYE_A0072 NONE
 THEYE_A0073 NONE
 THEYE_A0074   80235 ..   80255 +  -5.5    -3.497   CTCTTAGTGTCATTA            TTCCCTTTA AAA TAAAAGGAA            GTTTTGTTGCTTTAA  57 391
 THEYE_A0076   81042 ..   81054 +  -3.3  -4.89393   CACTCCTAAAAGATA                CTGAC TGT GCCAG                TTTTTGTACCCTTTG  66 68
 THEYE_A0078 NONE
 THEYE_A0079   84042 ..   84057 +  -4.6  -2.64324   GGCAATACACTACCG              CAGCCT TGAA AGGCAG               AGTTTTTAAATGCTT  48 1
 THEYE_A0080 NONE
        glgB   86736 ..   86747 +  -2.2  -3.74693   GTCCTCAATGGGTAA                GAGG AATC TCTC                 TTTGATGCAATAGAA  47 91
 THEYE_A0082 NONE
 THEYE_A0083   89220 ..   89240 +  -6.1  -3.61715   CATGAGCACTTTCAG            GTGCAGGAA TTA TTCCTTCGC            TTCTTGCAAAAAGTA  62 230
 THEYE_A0085 NONE
 THEYE_A0086 NONE
 THEYE_A0087   91919 ..   91933 +  -4.3  -3.61398   CTGCTACCAGTATAG               TTCCT ATATG AGGAA               TTATTGCCAGCAGAG  56 77
 THEYE_A0088   92804 ..   92819 +  -6.2  -3.37537   TTTGCCTGCTTCAAG              TGCTAA AATT TTAGCA               TTGGCTTTTCCCATA  61 171
        fabG NONE
        acpP NONE
 THEYE_A0103  108120 ..  108134 +  -2.2  -4.53707   GATTGAACAGAAAGC               TATTTA TTC TAAGTA               TTTTGTGCCTTTGTT  57 369
 THEYE_A0105 NONE
 THEYE_A0106 NONE
 THEYE_A0107  109662 ..  109678 +  -2.3   -5.7946   AAACTGCATTTTCCC              TATTAGT TTG ACTATTA              TTTTTTTCTTCAAAC  78 100
 THEYE_A0116 NONE
 THEYE_A0117 NONE
 THEYE_A0118 NONE
 THEYE_A0119 NONE
 THEYE_A0120  123743 ..  123761 +  -3.2  -2.59742   CCAGTCATCCTCCAC             CAAGATTT TAA AAATGTTG             ATTATAAAACTTGAA  42 15
 THEYE_A0121 NONE
 THEYE_A0122 NONE
 THEYE_A0123  126207 ..  126220 +  -2.5  -4.67168   ATTTTGTTTGCCATA               TTTTT CTGA AAAAA                TTTTTAAAAATTTTT  63 456
 THEYE_A0126  131175 ..  131189 +  -4.2  -4.74801   GAGACTCTATTATAC               CAGGGA TAT TCCATG               TTTTTAATCCAATTA  68 39
 THEYE_A0129  134716 ..  134757 +  -7.3  -3.30124   CAGACAAAATTAAAG TAAGAGGGGAGATTCGCTT TCTA AAGTGGATCTCCCCTAAAA  TTATCAAACCTGCAA  65 88
 THEYE_A0131 NONE
       groS1 NONE
 THEYE_A0133  138996 ..  139008 +  -3.5  -2.87344   TCCCTTGCCTGATTT                TTATT GCG AATAA                TGTATAAACAGAATC  45 13
 THEYE_A0134  140168 ..  140178 +  -5.4  -2.71791   AGACATCAAAGACAT                 CAAG AAA CTTG                 CTTTCAAAGACAAAT  51 157
        mtgA  145610 ..  145629 +  -3.6  -4.59773   GGATAAAAACTGGAT            GGTTTATA TCCG TATGGACC             TTTTTCAAAATAAAA  65 445
 THEYE_A0144 NONE
 THEYE_A0145  154325 ..  154335 +  -2.6  -3.80207   TTTAGACATGAAAAA                 TTAT AAC ATAA                 TTTGCGATTTTGTTG  51 395
        hemL NONE
 THEYE_A0148 NONE
 THEYE_A0149 NONE
 THEYE_A0150 NONE
 THEYE_A0151 NONE
         pgi  158303 ..  158313 +    -4  -2.98668   CTCAGTTAGTCCGTC                 TTTG CCC CAAA                 TGCCTTTTTTCTCTT  47 76
        aroK NONE
        aroB NONE
 THEYE_A0156 NONE
 THEYE_A0157  162266 ..  162285 +  -2.3  -3.41527   GATTTGACAAATAAA            TAATTTT TTGTTT AAAATTA             TTCTAATGAAAATTA  46 23
 THEYE_A0158 NONE
 THEYE_A0159 NONE
 THEYE_A0160 NONE
 THEYE_A0161  164989 ..  165009 + -12.6  -3.15027   GAATAAAAACCTTTA            CTCCCTCC TATTT GGAGGGAG            CTTTTCCTAAAAAAT  90 35
 THEYE_A0162 NONE
 THEYE_A0163 NONE
 THEYE_A0164 NONE
 THEYE_A0165  168511 ..  168553 + -14.6   -3.4647   GAGTCTCTGTAACTT TTTATGGAGGAAAAGA-GT AGCCGA ACGTCTTTTCCTCCATAAA TCTTTACATATTCAA 100 29
 THEYE_A0179 NONE
 THEYE_A0180  187592 ..  187613 +  -4.3  -4.78107   CTTCCTTTAAACCAT           AGGGATAGC CTGA GCCATCCCA            TTTTTCATGATGATG  70 275
 THEYE_A0188  194742 ..  194759 +  -2.8  -3.99353   AGAAAATTCAAGTAT             GATAAT TTTGCC ATTATC              TTTAATTACTCTATG  53 271
THEYE_A0189a  196388 ..  196408 +  -8.4  -2.89564   AACATATCTATACCG            TGTTCTAC TGCAT GTAGAACA            TCTATCAAGTCGCCG  68 322
 THEYE_A0192 NONE
        nrfA  200979 ..  201014 + -12.1  -5.80951   ATAAAAATTATTAAA    GCTTCTGCAGTCTGGA GAGCA TTCAGA-TGCAGAAGC    TTTTTTATTTTAAAT 100 37
 THEYE_A0194  201713 ..  201723 +  -2.6  -4.36914   TGCTTTTAAATTTAC                 TTAA AGA TTAA                 TTTTATGCCCAAAGG  58 15
 THEYE_A0195  202287 ..  202304 +    -2  -4.65458   AAAGGAAATCCTGCA             TGGGAT GCCACA ATTCCA              TTTATTGTTTGTATC  62 364
 THEYE_A0198  204374 ..  204392 +  -3.2  -4.81752   TTGTAATCATTATGG             TAGGATTT GAA AAGTCTTA             TTTTTCCATCTTTTT  65 374
 THEYE_A0200 NONE
 THEYE_A0201  207124 ..  207134 +  -2.6  -4.39998   TTTTATCTTTACCCA                 TATA TCT TATA                 TTTGTTCTCTCAATA  58 428
 THEYE_A0207  212426 ..  212440 +  -7.2  -3.53343   TTTTCCTGTAATTCA               TAAGCT TTA AGCTTA               TTTAAAAGCCCGATT  68 303
 THEYE_A0209 NONE
 THEYE_A0210 NONE
 THEYE_A0211 NONE
 THEYE_A0212 NONE
 THEYE_A0213 NONE
 THEYE_A0214 NONE
 THEYE_A0215  221045 ..  221062 +  -2.1  -2.62613   TAAAACATCTTCATC             TATAAGA TTTG TTTTATA              ATATTTCAAATGGAA  40 21
 THEYE_A0216  221636 ..  221647 +    -3  -3.78027   TAAAAAAGTCCATTC                TGTT TAGG AACA                 TCTTTCTTAATTCTG  52 38
 THEYE_A0230 NONE
 THEYE_A0231 NONE
 THEYE_A0232 NONE
        rpoN NONE
 THEYE_A0234 NONE
 THEYE_A0235 NONE
 THEYE_A0236 NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG NONE
        atpD NONE
        atpC  244483 ..  244515 + -15.1  -3.31322   GCATATACTAAATAA      GTAAAAGGGAGAG CAACAAC CTCTCCCTTTTAC      TTATAGACCATTCAA 100 43
 THEYE_A0245 NONE
 THEYE_A0246  249014 ..  249045 +  -7.4  -4.01184   AAGCCCTCGCCAGCC      CTGAGGTATTTCCT GTAC AGGAACTATCTTAG       TTTCTGCTCCTGTGT  76 349
 THEYE_A0250  253038 ..  253054 +  -2.3  -2.61888   TTAGAAGCAAAAATA              CTTAAAG GAG CTTTAAA              ATGTTTGAGAAGTTT  40 171
 THEYE_A0251  255480 ..  255497 +  -2.7  -2.52464   TTAAAGAAGTCCAGG             AAGAAGT AACA ACTTCTG              TGAATTAAGAGGAAA  40 0
 THEYE_A0252 NONE
 THEYE_A0253 NONE
         tig NONE
        clpP NONE
        clpX NONE
 THEYE_A0257 NONE
 THEYE_A0258 NONE
 THEYE_A0259  261894 ..  261914 +  -5.5  -3.06341   ATGAAGCAACTATTC            CTCTTAAAA GAC TTCTAAGAG            ATTTTAAAAACTCTT  54 241
 THEYE_A0261  262499 ..  262511 +  -6.3   -5.0916   AAGAGCTATGATGAA                GCATT GAG AATGC                TTTTTGTATTGAGAG  82 269
 THEYE_A0260 NONE
 THEYE_A0262 NONE
 THEYE_A0263  265698 ..  265717 +  -4.3  -3.23598   ATTGTCTGAGGGGTC            TCCTTCT CTAAAA AGAGGGA             TTCCTCACTTCATTC  52 107
        flgB NONE
        flgC NONE
        fliE NONE
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
 THEYE_A0271 NONE
 THEYE_A0272 NONE
 THEYE_A0273 NONE
        flgD NONE
 THEYE_A0275  275492 ..  275502 +  -6.8  -4.25104   AGTTTCAATTTCCTC                 GGGA ATC TCCC                 TTTTCCTGAAAAGCC  71 486
 THEYE_A0287  285888 ..  285904 +    -3  -4.29845   TTATTTCAAATATTT              CAAAGC AGGAG GTTTTG              TTTTGAATTGCATTA  57 3
 THEYE_A0288 NONE
 THEYE_A0289 NONE
 THEYE_A0290  287682 ..  287721 + -11.8  -3.69354   CAATGGTCTTACCCA  TCCTTACCCATGTATATAT ACA ATGTATATA-GGGTAAGGA  TTTAGAATTATCAAG  95 272
 THEYE_A0291  289794 ..  289809 +  -6.2  -2.78679   CCAGCCGTTTAAACT              TGTACA GTTT TGTACA               GTTTAAGTGACCAGG  57 0
 THEYE_A0292  295992 ..  296018 + -10.8  -2.60032   GCTTTTTCCACCACA         CCACCCGCAACC TTC GGTTGAGGTTGG         AATTTTTGCCAGACC  82 314
 THEYE_A0293 NONE
 THEYE_A0294 NONE
 THEYE_A0295 NONE
 THEYE_A0296 NONE
 THEYE_A0297 NONE
 THEYE_A0298 NONE
 THEYE_A0299 NONE
 THEYE_A0300 NONE
 THEYE_A0301 NONE
 THEYE_A0302 NONE
 THEYE_A0303  300718 ..  300737 + -10.7  -2.92667   AAAAAATAACCCAAA            GGCAGGC CTTAGA GCCTGCC             TGATTTAAAAATTCA  81 32
 THEYE_A0304 NONE
 THEYE_A0305  302997 ..  303014 + -12.7   -3.1706   TAACCCCCGCCCAGG             GCCACCC CCCT GGGTGGC              TTCGTAGAATCGATT 100 38
 THEYE_A0306 NONE
 THEYE_A0307 NONE
 THEYE_A0308  304948 ..  304962 +  -5.7  -3.63068   TTTATATTTCAATAT               CAGGT TTCTT ACCTG               TTTCACCTGATATGG  59 266
 THEYE_A0311 NONE
 THEYE_A0312  306072 ..  306090 +  -7.4  -4.07568   TTTGCTATCTATCAC             CGAAAACG AAA CGGTTTCG             TTTTCGGAAGAGGAG  74 48
 THEYE_A0314 NONE
 THEYE_A0315  307916 ..  307927 +    -3  -3.05667   AATAGCGAGAGGTAC                TTGA TATG TCAA                 AGTTTTTTATTTTTC  45 232
 THEYE_A0317 NONE
 THEYE_A0318  309909 ..  309923 +  -4.3  -4.20834   AAGTTCTGTTGCCAC               GCTAA CTATT TTAGC               TTTAATTCTTTTCCC  62 113
 THEYE_A0332 NONE
 THEYE_A0333  325352 ..  325363 +    -3  -4.16921   AGGTTTATTAATGCA                GAAA GCTT TTTC                 TTTTAAAACTTCTTC  57 57
 THEYE_A0334 NONE
 THEYE_A0335  327485 ..  327507 +  -9.8  -3.78953   GGGTCTCTTCCTTTG           GAGGCGAGGA GAT TCCTCGTCGC           TTTGCTCCTGGGAAT  83 203
        rplI NONE
        dnaB NONE
 THEYE_A0338 NONE
 THEYE_A0339 NONE
 THEYE_A0340 NONE
         alr NONE
 THEYE_A0342 NONE
         era NONE
 THEYE_A0344 NONE
        recO NONE
 THEYE_A0346 NONE
 THEYE_A0347 NONE
 THEYE_A0348 NONE
 THEYE_A0349 NONE
 THEYE_A0350 NONE
        lpxK NONE
 THEYE_A0352  339255 ..  339271 +  -5.9   -2.9162   CGACCTCCAAAGAAT              TATGCTA ACA TGGCATA              TAATTTGCACCATTA  56 148
 THEYE_A0353  339914 ..  339931 + -12.7  -4.05495   CTCCATAGTAATTTT             GGGAGGC TTAT GCCTCCC              TTTGACTTTTTATTG 100 33
 THEYE_A0354  340624 ..  340641 + -12.7  -5.07053   CTCCATAGTAATTTT             GGGAGGC TTAT GCCTCCC              TTTTTTAAAATGATT 100 33
 THEYE_A0355  342492 ..  342525 +  -3.9  -4.35604   ACCTTCAAAAAAAGA     GCCTGTTCAATAAAT TACA AGTTCTTGAACAGAC      TTTATTGTCCATTAG  62 13
 THEYE_A0358  344991 ..  345002 +  -4.4  -2.90941   TTTTCTTATGTTATC                CATG TGGT CATG                 TGTATCAGATATAAT  48 440
 THEYE_A0361  347019 ..  347031 +  -5.5  -4.17523   ATTTGTTCTTTATAA                GGAGT TGG GCTCC                TTTTAAGAATTATTT  66 59
 THEYE_A0365 NONE
        ispG NONE
        rpmE  351926 ..  351959 +  -2.5  -5.46706   TAGAACTTTTGTATA     GGGGTTAGAAC TGAATTTTCCTT TTTCTAACCCC      TTTTTATTTTGGAAT  72 44
 THEYE_A0368 NONE
        prfA NONE
 THEYE_A0370 NONE
 THEYE_A0371 NONE
        glgC NONE
 THEYE_A0373 NONE
 THEYE_A0374  359774 ..  359797 +  -5.4  -4.33417   CTTTCTCTATCAATG          CTTTTTATTC TAAA GGGTAAAAAG           TTTGTTATCCCTGAA  69 454
 THEYE_A0390  380070 ..  380088 +  -3.9   -2.7794   CCCTTAATTTTTTTG             CTTCAAG AACAC TTTGAAG             AGTTTTTCTTACGCT  46 360
 THEYE_A0424  409875 ..  409886 +  -2.2  -3.39772   TGTCCCATCTTATAT                GCTA AATT TGGC                 TCTTTAAGAATTTCC  45 132
 THEYE_A0438 NONE
 THEYE_A0439  426439 ..  426471 + -12.3  -4.59511   TTAAAAATAACACAG      CTTGTAGTTTATTGA TTT TCAATAAATTGCAAG      TTTTTGAACAATCTT 100 507
 THEYE_A0440  428304 ..  428326 + -12.8  -5.63517   CTGAGTAAAAAACAG           CCTCTATCCT TCA GGGATAGAGG           TTTTTTATTTAGGAG 100 198
        thiS NONE
        thiG NONE
       thiE2 NONE
        thiC  431511 ..  431534 +  -2.4  -4.89567   TGCTTTTATCTCTGT          GCCCAAAAAA AAGG TTATTTGGTC           TTTTCTCTTTTCAAG  65 323
 THEYE_A0447 NONE
 THEYE_A0448 NONE
 THEYE_A0449 NONE
 THEYE_A0450 NONE
 THEYE_A0451 NONE
 THEYE_A0452  439124 ..  439136 +  -2.7  -3.67597   ACAATAAATAATCTG                GATTT GGA AAGTC                TTATTAAGTAGGAGG  48 2
 THEYE_A0453 NONE
 THEYE_A0454 NONE
 THEYE_A0455 NONE
 THEYE_A0456 NONE
 THEYE_A0457  442639 ..  442667 +  -9.7  -3.95627   TGGAGGAAATATTTT        CAGGGAATAAGAT TAA ATCATATTTCCTG        TTATTCTATCCTTTT  83 16
 THEYE_A0460  445761 ..  445773 +  -6.3  -3.69069   TTCTTGAACTCATTG                CAAGA CCG TCTTG                TTCTCTTACAGTTGG  64 325
 THEYE_A0462  447308 ..  447329 +  -4.5  -2.99813   AGGTTTTACAATTCT           TCTGTATAT TAGT GTATGCAGA            TGTATACTGTCTGGT  50 260
 THEYE_A0464 NONE
 THEYE_A0465 NONE
 THEYE_A0466 NONE
 THEYE_A0467 NONE
        galE  451474 ..  451528 +   -13   -3.1634   TTCTGTCACCCTGAG GCGAACCGAAGGGTCTCCTCCTTTTT AAA AAAAAAGATGAGATTCCTCGCTTCGC TTCGCTACTTTCGGA 100 196
         gmd  453011 ..  453023 +  -7.7  -2.74792   GCATTCTTAATAGAC                GCGAA GAA TTCGC                CTTTAAGGGTCATCC  65 217
 THEYE_A0471  454737 ..  454767 +  -9.3  -3.34984   GAAAAATAGGATCGA       TTGTAGTTTATTG CTTTT CAATAAATTACAA       GTTTTTGAACAGTCT  77 172
 THEYE_A0472 NONE
 THEYE_A0473 NONE
 THEYE_A0474  457888 ..  457902 +  -2.1  -3.64162   TTGAGATTTTTGGAG               GTCTT GTTAA AAGGC               TTTAAAATAATTCAT  47 6
 THEYE_A0475 NONE
        cysC NONE
 THEYE_A0477 NONE
 THEYE_A0478 NONE
 THEYE_A0479 NONE
 THEYE_A0480 NONE
 THEYE_A0481 NONE
 THEYE_A0482 NONE
 THEYE_A0483 NONE
        asnB NONE
 THEYE_A0485 NONE
 THEYE_A0486  471015 ..  471034 +  -2.2  -3.20858   TATTCAGAGTTAATA            AAAAATGA AAAA TCATTTTA             TTGATGAATCTGATA  44 2
 THEYE_A0487 NONE
 THEYE_A0488 NONE
 THEYE_A0489 NONE
 THEYE_A0490  475717 ..  475729 +  -3.5  -2.95208   TACGACAGGTGTTCA                TTTTA AAT TAAAA                TATGGTCTTAATTAT  45 73
 THEYE_A0491 NONE
 THEYE_A0492 NONE
 THEYE_A0493 NONE
 THEYE_A0494 NONE
 THEYE_A0495 NONE
 THEYE_A0496 NONE
 THEYE_A0497 NONE
 THEYE_A0498  485481 ..  485491 +  -2.6  -2.52104   TAAGGGGTAAAGAGA                 TTTT GAG AAAA                 ATATTAATGATATTT  40 89
 THEYE_A0499  486728 ..  486738 +  -5.4  -3.18945   CCCTGAGGCGAAGCT                 GAAG GGT CTTC                 TCTATTGTAGCTAAG  56 143
 THEYE_A0500 NONE
 THEYE_A0501 NONE
 THEYE_A0502  488761 ..  488773 +  -7.7  -2.82668   TTCCGAGCCGAAGGC                GAGGA ATA TCCTC                ATTTCCGATTTAAGG  66 511
        metE NONE
        nrdD NONE
        trpE  497025 ..  497045 +  -3.9   -3.8917   GTAAATTTTCTCCAA            TCTGGAGGA CTG TCCTCATGA            TTCTTATAATTGACA  56 5
 THEYE_A0507 NONE
        trpD NONE
 THEYE_A0509 NONE
 THEYE_A0510  499369 ..  499387 +  -3.8  -2.55668   CCCACACGCTCCCGC             CAACTCTT TAA AGGAGGTG             CTTAATATGAAAATA  45 24
 THEYE_A0511 NONE
 THEYE_A0512 NONE
         fhs  502177 ..  502188 +    -3  -4.20148   AATAAATTTAAAGCT                TCAT CCAT ATGA                 TTATTTTCCCATAAT  57 468
 THEYE_A0524 NONE
 THEYE_A0525  516153 ..  516164 +    -3   -4.4267   AGCGAAAGCCAGTGC                TTCT ATTA AGAA                 TTTTAAATTTTAAAC  60 90
 THEYE_A0526 NONE
 THEYE_A0527  517377 ..  517388 +  -5.8  -3.61889   TAATACTGCTCTGAA                GGAG ATAA CTCC                 TTTAAAAACTTTTTC  62 261
 THEYE_A0531 NONE
 THEYE_A0532 NONE
        recA NONE
        recX NONE
 THEYE_A0535 NONE
        alaS NONE
 THEYE_A0537 NONE
        selA NONE
 THEYE_A0539  527118 ..  527129 +  -2.2  -2.71681   TTTATTCCTAAAAGC                TGGG CAGT TCCA                 TGATTGAAGGAGTTG  40 11
        acpS NONE
 THEYE_A0541  528001 ..  528013 +  -3.4  -3.40597   AAATTATCTCTATAA                GCTT TGAAT AAGC                TATTTAAATCAAAAG  50 15
 THEYE_A0542  528729 ..  528739 +  -3.2  -3.77808   AGGTCCTGTTTTTGA                 GCTT AAG GAGC                 TTGTATTATGATGCC  52 4
 THEYE_A0543 NONE
 THEYE_A0544 NONE
        hslO  531576 ..  531592 +  -4.4  -2.73243   ATTCATTGAAGGACC              TTTGGG AATTG CCCAAG              ATTTGAGCACTCCAT  47 330
 THEYE_A0548  533655 ..  533667 +  -2.7   -5.4251   ACGATACCATCAACC                TTTAC CAT GTAAG                TTTTTTCTATCTGGG  76 349
 THEYE_A0562  551558 ..  551575 +  -2.7  -4.39287   TAAGGTCAGGGAAGT             TGTAAGA AAAT TCTTTCA              TTTTGATATAATTGG  58 21
 THEYE_A0563 NONE
        nadA NONE
 THEYE_A0565  554642 ..  554657 +  -3.2  -2.73854   TTCTTCTTTTTCACT              TGCTGA AAGT TCTGCA               TAATATCGTTTAGTA  43 439
 THEYE_A0574  563712 ..  563723 +    -3  -3.54741   TTCTATCATCATATC                TTCT TTCA AGAA                 TTTAAAAAGATCATA  48 46
 THEYE_A0575 NONE
 THEYE_A0576  564761 ..  564773 +  -3.3  -3.90048   AGCACCAAAAAAACC                CACAG GCT CTGCG                TCTTTTTCAGCAACA  55 377
 THEYE_A0580 NONE
 THEYE_A0581  570410 ..  570420 +    -4   -5.1244   AAGGTCTTGTTCTTT                 TAAG TTT CTTA                 TTTTTATATTCATCC  73 471
 THEYE_A0586  575621 ..  575631 +  -2.6  -3.33922   AATCTTTCAACCCTT                 TAAA AAA TTTA                 GTTTTTCCAAGCAAT  47 358
 THEYE_A0590 NONE
 THEYE_A0591 NONE
 THEYE_A0592 NONE
 THEYE_A0593 NONE
       glyA1  585084 ..  585095 +  -2.2  -3.30453   AAAGCTTGAACTTAA                GTTC AATA GGAC                 TTGATGTGCATTCTC  44 352
 THEYE_A0607  598001 ..  598015 +  -6.4  -3.70331   AGCAATGCTTTGTAT               GCTTCG TAT TGAAGC               TCTTTTGCATCAGTT  64 455
        aspS NONE
 THEYE_A0618 NONE
 THEYE_A0619 NONE
 THEYE_A0620  609430 ..  609441 +    -3  -5.93252   TCAATCAATAAGTTT                TCAA TTTC TTGA                 TTTTTTGTTTTTAAA  89 372
 THEYE_A0626 NONE
        folP  616266 ..  616282 +  -9.5  -3.13743   TCGTTAAAAAGTTCT              CCAGAAA ATC TTTCTGG              TTCACTCTGAGCTTT  74 301
 THEYE_A0632 NONE
      csm1_2 NONE
      csm2_2 NONE
      csm3_2 NONE
 THEYE_A0636 NONE
      csm5_2 NONE
      cas6_2  631826 ..  631848 +  -4.2  -4.17048   GGCGATGAATCTCAA           TCTCTATTTT TGA AGAAAAGAGA           TTATTTTCAACCAAC  60 229
 THEYE_A0639 NONE
 THEYE_A0640  636249 ..  636259 +  -3.2  -3.54109   TTTGAAAAATTAATT                 TCCT CAG AGGG                 TTATAATTAACTTAA  48 108
 THEYE_A0641 NONE
 THEYE_A0642 NONE
      cas2_1 NONE
 THEYE_A0644 NONE
 THEYE_A0645 NONE
      cas2_2  643046 ..  643062 +  -7.3  -2.62616   TCGAACCTGCGACCC              GCTGATT AAG AGTCAGC              TGCTCTACCAGCTGA  61 214
 THEYE_A0648  643634 ..  643645 +  -4.4  -3.42699   CAATTAATGAAACTT                CATC ACAG GATG                 TTATAATAGATACAT  54 8
 THEYE_A0649  644766 ..  644783 +  -7.1   -3.2027   ATCTGAAACAAGTGC             TTCAATG TCCT CATTGAA              TATATACTTTTTTTG  65 395
        ileS NONE
        lspA NONE
 THEYE_A0656 NONE
 THEYE_A0657 NONE
 THEYE_A0658 NONE
 THEYE_A0659 NONE
        gmhA NONE
        ruvC NONE
 THEYE_A0662  656267 ..  656277 +    -4  -3.25113   GAAAGCTTCTCCATC                 TTTC AGT GAAA                 TATTCCCTTTTAGAG  49 202
 THEYE_A0672 NONE
        folE NONE
 THEYE_A0674 NONE
 THEYE_A0675 NONE
 THEYE_A0676 NONE
       pilB1 NONE
        nadB NONE
         pyk  675990 ..  676004 +    -5  -3.62491   TTCCAAAATCTATCA               TGCTTG AAT TAAGCA               TTTCAAGAATTTTTT  57 511
 THEYE_A0681  676781 ..  676795 +  -2.1  -2.62265   TAAAAACCTATATAT               CTTCT ATGTA AGGAG               GTGTTGTCTATGCCT  40 15
 THEYE_A0682 NONE
 THEYE_A0683 NONE
 THEYE_A0684  678713 ..  678723 +  -2.6  -4.42062   AAAGATTAACAGAGT                 TTTT AAC AAAA                 TTTGTTTAAAAGCTA  58 87
        fdhD  685075 ..  685097 +  -2.7  -4.96501   TCAATTAATTTCTTT           GCAAGATTC TTTAT GTATTTTGC           TTTGTTTTTATAGAA  66 374
 THEYE_A0695  687468 ..  687481 +  -6.7  -3.96216   TCAGCAACTTTCAGA               TCAGG CATT CCTGA                TTGTTTAACTCCAAA  69 188
        priA  694910 ..  694922 +  -2.7  -4.88918   ATGGACTCTGATAGT                TTTAC CAA GTAGA                TTTTCTTTAAAATCA  66 161
 THEYE_A0707  700230 ..  700246 +  -3.7  -4.54449   CTACATAATTTTAGC              TGAAACA ACT TGTTGCA              TTTTATATAACCTAT  63 33
 THEYE_A0708 NONE
 THEYE_A0709 NONE
 THEYE_A0710 NONE
 THEYE_A0711  703597 ..  703610 +  -3.9  -4.71061   TTTCTTTTGTATCAT               TTTGA TAAA TCAAA                TTTTTAAATCTAAAT  65 163
 THEYE_A0712  705468 ..  705480 +  -7.7  -4.13561   AGGAGCGTTAGTAAC                GAGGA GTC TCCTC                TGTTTTTTAAGGAAA  77 411
 THEYE_A0713 NONE
 THEYE_A0714  706423 ..  706439 +  -3.7  -4.06993   AAATGTGAGCTTGGC              TGTTTCT GAT GGGAACA              ATTTTTTTTGAGCTT  56 17
 THEYE_A0715 NONE
        hemA NONE
        hemC NONE
 THEYE_A0718 NONE
        hemG  712469 ..  712482 +  -3.8  -3.46873   TTAGTTTAAGCTCAA               CAGG TTTTTT CCTG                TATTCTTCAATTTGC  51 179
 THEYE_A0722 NONE
 THEYE_A0723  714478 ..  714488 +  -2.6   -3.3482   ACGAGGTAAATGTGT                 TTTT TCA AAAA                 TTAATTAACAAATTG  44 74
 THEYE_A0724 NONE
 THEYE_A0725  717399 ..  717410 +    -3  -4.10566   TGACTCTGAATGCCA                TCTT CTTT AAGA                 TTGTTGTTATTAAAT  57 297
 THEYE_A0727  720604 ..  720622 + -10.4  -3.33261   AAATAAATTATTTAT             TGCTTTTC AAA GAAAAGCA             TTATAAACCTTAGGA  83 1
 THEYE_A0728 NONE
 THEYE_A0729 NONE
 THEYE_A0730 NONE
 THEYE_A0731 NONE
 THEYE_A0732 NONE
 THEYE_A0733 NONE
 THEYE_A0734  727037 ..  727055 +  -6.1    -4.788   AATGCAATGTTCTTA             GCATTAA GGAAA TTAATGC             TTTTTGAGTTCCTTT  80 122
 THEYE_A0735 NONE
 THEYE_A0736  728975 ..  728987 +  -3.4  -3.11476   TCAAGATTTAAAAAA                GTTG CTGAA CAAC                TAATTTTCCCTGAAT  46 10
 THEYE_A0739  731621 ..  731637 +  -2.3  -3.64142   ATTTCTTGAACTGTT              GAAATTT GCC ATATTTC              TTGTGTGATATTTTC  47 109
 THEYE_A0745 NONE
 THEYE_A0746 NONE
 THEYE_A0747  741000 ..  741032 + -12.3  -4.59109   TGAAAAATTTTAGAG      CTTGTAATTTATTGA ATT TCAATAGGTTACAAG      TTTTTGAACAGTCTC 100 273
 THEYE_A0748  741504 ..  741514 +  -2.6  -4.35675   GAGGGGCGATTGAAA                 TATA GTT TATA                 TTTTAGTAACTTTTT  58 146
 THEYE_A0749  742489 ..  742503 +  -4.3   -2.8789   CAGTAAGCTCACGTG               TTGCT GAAAG AGCAA               TATCATAATGTTTAA  48 303
 THEYE_A0757  747828 ..  747850 +  -2.1  -5.86976   TATCACTGTCTTTAC          TCCT-GCT-CT TTT AGCAGCAAGGA          TTTTTTCTTTTATGC  83 193
 THEYE_A0759 NONE
 THEYE_A0760  750741 ..  750773 + -10.9  -3.65201   AAAAAAATTGAGGGA      CTTGTAGTTTATTGA TTT TCAATAAATTATAAG      TTGTTAACAGTCTTA  89 198
 THEYE_A0761 NONE
 THEYE_A0762 NONE
 THEYE_A0763  753705 ..  753722 +  -5.7  -4.34285   AAAGTCTTGGGAAAA             TAGAAAA AACT TTTTCTA              TTCTTTCTTTAAATC  69 357
        sdhA NONE
 THEYE_A0771 NONE
 THEYE_A0772  762229 ..  762239 +  -3.2  -3.30651   AGGAGCTTTTTATTT                 TCTC AGG GAGG                 TGTTCTAATGTGGAG  46 7
 THEYE_A0773 NONE
 THEYE_A0774  763790 ..  763804 +  -5.8  -3.90744   GCTGGCAAAGGTGGC               TAAAAG AAA CTTTTA               TTCTTTAACAAAAGA  64 23
 THEYE_A0779 NONE
 THEYE_A0780 NONE
 THEYE_A0781 NONE
 THEYE_A0782 NONE
 THEYE_A0783  771982 ..  771992 +  -6.8  -3.04322   GCAACTAATATACAG                 GCTC TGC GAGC                 TATTACAACATTAAC  59 48
 THEYE_A0785 NONE
 THEYE_A0786 NONE
 THEYE_A0787  775844 ..  775858 +  -2.9  -3.28712   GGCCTCCAGGATAGT               TTTTC CTGAT GAAAA               TTCTCAAAAAGGAAG  46 27
 THEYE_A0788  776413 ..  776448 + -13.4  -2.50443   AGCTTTATAGATTAA    TTTTTGAGGGCAGAGG TCGT CCTCCACCCTCAAAAA     CTTACTCCAATCTGA 100 26
        proA NONE
        nadD NONE
 THEYE_A0792  779516 ..  779535 +  -4.4   -4.9448   AAAAATGATAAATAT            GTTATAAA AATA TTTGTAAC             TTTTGTTTACTCCAT  73 39
        rpsF  779949 ..  779963 +  -2.8  -3.35046   CCTTCAGAAATAGCT               TCTCAA GGA TAGAGA               TGTTTAACAGGATAA  44 14
 THEYE_A0794 NONE
        rpsR NONE
 THEYE_A0796 NONE
 THEYE_A0797 NONE
 THEYE_A0798  781892 ..  781916 +    -3  -4.47397   TATGAGAAGAGTCAG          CAATTAGAAA TTCAC TTTTTAGTTG          TTTTCCTCTCTTTCT  62 447
 THEYE_A0801  783914 ..  783928 +  -7.8  -3.37901   TGCATTCAATACACA               GGTCAG TCA CTGGCC               TTGCTTCAAGTCTTT  69 68
 THEYE_A0808 NONE
        bioB NONE
        bioW NONE
 THEYE_A0811  792272 ..  792284 +  -6.3  -2.69468   GGTCCTTGGGATCGT                CCTTT ATT AAAGG                TAGTGTATCAGCATA  57 68
        miaA NONE
        rpsP  797067 ..  797080 +  -6.7  -3.89346   CGTTTCTGCTTAACA               TACCC ATTT GGGTA                TTTACTACTCTTTTT  69 28
 THEYE_A0819  797372 ..  797390 + -11.7  -5.24291   AGTGAATTAAATAAA             GGGCGTG CTTTA CACGCCC             TTTTCTTTTGATTTT 100 49
        trmD NONE
        rplS  798506 ..  798526 +  -4.8  -3.17762   GAAAAAACAGACTAT           CA-AAAGGC ATGA GCCTTTTTG            CTTTTGATGAGTCTT  52 14
        rnhB NONE
        hypF  801629 ..  801639 +    -4  -3.81488   AAGGCATCTGGGGTA                 TTCT TTC AGAA                 TTATCTTTAAACCAA  56 39
 THEYE_A0825  803817 ..  803855 +  -2.6  -3.30635   CAAATCTCTCGGGAT  GTCTTGGTG-CAATG ATTAGAGTTC CATTGATACCGAGAC   TTATAAAAGAATTTA  45 494
        moaE NONE
 THEYE_A0840 NONE
 THEYE_A0841 NONE
 THEYE_A0842 NONE
 THEYE_A0843 NONE
 THEYE_A0844 NONE
 THEYE_A0845 NONE
 THEYE_A0846  821117 ..  821130 +  -3.8  -3.74646   GGGGAAAGAATCACT               GCCT ACAATC AGGC                TATATTTTTTGTCTG  55 383
 THEYE_A0848 NONE
 THEYE_A0849 NONE
 THEYE_A0850 NONE
 THEYE_A0851 NONE
 THEYE_A0852  824742 ..  824760 +  -2.4   -4.0802   GGCTTCTTCAAACTC             TCTATATC TAA GAAGTAGA             TTTGCTTCTTCCAGT  52 438
 THEYE_A0864 NONE
 THEYE_A0865  837082 ..  837095 +  -2.4  -5.42862   CTCTGAGTGTTTCTT               TTGG TAAAGC CCAA                TTTTTTTGAAACTCT  74 133
        leuC  839424 ..  839465 +  -3.3  -6.17268   TTTTAACGGTTATTT TAGATAGTTTTTTATCT TTGGTTTC ATATAAAAAACTAACTA  TTTTTTTTATTCTGC  95 370
 THEYE_A0878  847836 ..  847846 +  -5.4  -4.82863   TCCTCTGGGATTATA                 TGCT TGG AGCA                 TTTCTTTTATGATTG  74 3
 THEYE_A0879 NONE
 THEYE_A0880 NONE
 THEYE_A0881 NONE
 THEYE_A0882 NONE
 THEYE_A0883 NONE
        valS NONE
 THEYE_A0885  854781 ..  854794 +  -2.5  -2.88617   ACGGACTTTTAAGAC               TTTTT CTTA AAAAA                TAATGTTTAATCCTT  42 9
        nadC NONE
        purM NONE
 THEYE_A0888 NONE
 THEYE_A0889  859410 ..  859443 +  -7.6  -5.63517   TAATCGGGAGACAGG     GGATGCTTTTGAGGT GTGTA ACTTCAAG-GCATCC     TTTTTTATTTAAAAA  93 197
 THEYE_A0891 NONE
 THEYE_A0893  863295 ..  863321 +  -9.4  -5.73339   AATAAGTTTTTTAAT         TAAGGGGAGGAT TCG AACCTCCCCTGA         TTTTTTTATAGTTCT 100 36
THEYE_A0894a  865530 ..  865545 +  -4.8  -3.72396   CTATTTATAGATTTT              TTATTG ATTT CAATAA               TTATATCTTCATCTT  59 91
 THEYE_A0897  869092 ..  869105 +  -6.7   -2.5547   TTATTGCCTCTTTTA               CAGCA TCTG TGCTG                CTTAATGTGCAGACT  56 227
 THEYE_A0899 NONE
        tatB NONE
        tatC NONE
 THEYE_A0902 NONE
 THEYE_A0903 NONE
 THEYE_A0904 NONE
 THEYE_A0905 NONE
 THEYE_A0906  875475 ..  875488 +  -3.1   -2.8733   TTAAAATAAGCAAAA               CTCTT TTTT GAGAG                GTGTTTTATGGAAAA  43 60
 THEYE_A0907 NONE
 THEYE_A0908 NONE
 THEYE_A0909 NONE
 THEYE_A0910  878494 ..  878528 +   -10  -6.08563   AGCCAAATAGAATCT     TTCTGGCTCTCTGTAG ACT CTACAGAGAGCCATTC     TTTTTTTTATCTATT 100 31
 THEYE_A0911 NONE
 THEYE_A0912 NONE
 THEYE_A0913 NONE
       nuoD1 NONE
 THEYE_A0915 NONE
 THEYE_A0916  882824 ..  882837 +  -8.1   -2.7186   ATAAAGAAGGAGGTA               GCGGA TGAA TCCGC                TAATTGAACAAGTTT  67 5
 THEYE_A0917 NONE
 THEYE_A0918 NONE
 THEYE_A0919 NONE
 THEYE_A0920 NONE
 THEYE_A0921 NONE
 THEYE_A0922 NONE
 THEYE_A0923 NONE
 THEYE_A0924  893324 ..  893361 + -12.1  -4.04859   TAGTCCCATCCCCTC   TAAAGGAGTCCCGCAGT TTAA ACAGCGAGATTCCTTTA    TGTTTATTTTATTAA 100 43
 THEYE_A0927  895711 ..  895722 +    -3  -3.73072   TTGTAAAATTTTAAC                TATG CTTT CATA                 TTTAATAAAAAGATT  50 69
 THEYE_A0928 NONE
 THEYE_A0929  897923 ..  897937 +  -4.3  -3.13899   ATACTCAGTGACTGT               TCCAT AATCA ATGGA               TGTTCATAGAAGATT  50 424
 THEYE_A0934  903450 ..  903480 +  -5.6  -5.08169   TATGGAATTTTTGGT       GTTTAAGATTTTCA TGT TGTAAATTTTAAGC       TTTTTTGAAATCTAT  76 409
 THEYE_A0936 NONE
        serA NONE
        purA NONE
 THEYE_A0939  908713 ..  908731 +  -5.4  -3.68836   AGAATTCATACACAG             TTTTTTTC AAT GAAAAAGA             TATTGTTTTAACAGT  59 438
 THEYE_A0947 NONE
 THEYE_A0948  916270 ..  916283 +  -3.9  -4.13816   AAAGGGTTGACAAAA               CTTAT CCTC ATAAG                TTATCTTTTTATAGA  59 196
         rrs  917967 ..  917995 +  -2.9  -3.86015   CGTAACAAGGTAGCC        GTAGGGGAACCTG TGG CTGGATCACCTCC        TTTCTAAGGAGAATA  52 29
         rrl  921068 ..  921091 +  -8.9  -5.88476   AATATTTTATAGAAA          GAGGAAGGG TTAATT CCCTTTCTC           TTTTTTATTTATTTT 100 65
 THEYE_A0953 NONE
 THEYE_A0954  924561 ..  924579 +  -9.6  -2.51937   TAGGGATAAAAAGCC             GTAAGCAC CAA GTGCTTGC             ATGTGTCTTTGGATT  75 134
 THEYE_A0960 NONE
        purE NONE
 THEYE_A0962 NONE
 THEYE_A0963  933619 ..  933629 +  -2.6  -3.14848   GTATACGGTGTTAGA                 TTAA ACT TTAA                 CTTTTAATGGAGGAG  43 8
 THEYE_A0964 NONE
 THEYE_A0965 NONE
       feoB1 NONE
 THEYE_A0967 NONE
 THEYE_A0972 NONE
 THEYE_A0973  942523 ..  942536 +  -3.1  -4.34866   ATTTCAGTCATTCCA               GAGAG TAAT CTTTC                TTTATCTTCTTGAAT  57 349
 THEYE_A0974  943787 ..  943801 +  -5.8  -5.46657   CCTCATTTATTGCCG               TTTCAA TTA TTGAAA               TTTTTTCTTGGAGTG  86 233
 THEYE_A0982  949378 ..  949394 +  -2.3  -4.45738   CTCAACAAGAGGCTT              TTCCT TAATCAC AGGAA              TTTGTTCTTCAAATA  57 104
 THEYE_A0996  963956 ..  963967 +  -4.4  -2.60244   GGAATGTTTGATTTT                CACA AAAC TGTG                 TGGATTGGTTAACCA  48 2
 THEYE_A0997  965071 ..  965081 +  -5.4  -3.43042   AGCCTTAACAATACT                 GAGT TCA ACTC                 CTTTTTCCTCAGCAA  57 481
 THEYE_A1009  977259 ..  977270 +  -5.8  -2.54325   CAATGCAATCTGCAG                CAGG ATAG CCTG                 ATATATTTGCAGAAG  54 181
 THEYE_A1016 NONE
 THEYE_A1017  983447 ..  983479 + -12.3  -4.57837   TGAAAAATTTTAGGG      CTTGTAATTTATTGA ATT TCAATAGGTTACAAG      TTTTTGAGGAAGTCT 100 159
 THEYE_A1018  984214 ..  984230 +  -2.9  -3.98484   GCCAGTTACTGTCAG              CAGGTTC AAA GTATCTG              TTTATAAATTCAATT  53 300
        secA  989156 ..  989169 +  -3.9  -3.95747   TTATTTTGAATATCA               CAAAA ATTG TTTTG                CTTTTTTATCTTTTC  57 434
 THEYE_A1023 NONE
 THEYE_A1024  992335 ..  992351 +  -3.1  -5.30616   TTAAATAGTTTTGCC              TGTAATT TTG AATTATA              TTTTTATTTCCGTAA  74 96
        rpsU  993814 ..  993839 + -12.7   -2.8949   GTCTACTAATATGCG         GGAGATTCTGT GAAA GCAGAATCTCC          TCAATTTTATTTGAT 100 46
 THEYE_A1027 NONE
        dnaG NONE
 THEYE_A1029  997820 ..  997830 +  -5.4  -3.52714   ATCTTGACTAATCTG                 CCTT TGT AAGG                 TTATAGTAATTTTGT  58 34
 THEYE_A1030 NONE
 THEYE_A1031 NONE
        rnhA NONE
 THEYE_A1033 NONE
 THEYE_A1034 NONE
 THEYE_A1035 1001705 .. 1001721 +  -5.9  -3.73302   CAAGGAAGCCTCAAA              CTGAAGA AGT TTTTCAG              TTATTGGATGTATTA  65 439
 THEYE_A1040 NONE
 THEYE_A1041 NONE
 THEYE_A1042 1013594 .. 1013606 +  -4.9   -5.5454   AATAATGGAAAAACC                TCTTA ATA TAAGA                TTTTTATTTATTTCA  85 487
 THEYE_A1050 1022521 .. 1022535 +    -5  -2.63631   GATGGAACAATCATT               TCTGCA TAA TGTAGA               TAATGTAAAAGTTGA  50 243
 THEYE_A1053 1024990 .. 1025018 +   -14   -4.7497   AACTATAATATTTTT        TAAGAGAGCTCG TTTAT CGGGCTCTCTTA        TTTTTCATGAATAAG 100 33
 THEYE_A1060 NONE
 THEYE_A1061 1031663 .. 1031678 +  -4.7  -3.52539   TCCACTCTTACGGAA              GCATG TAGACC CATGC               TTATACTTGGAATTG  56 18
 THEYE_A1062 1032769 .. 1032794 +  -7.7  -4.02534   GCATTGCCCGAAGGA         TCTCCTTTGTT GAAA AATGAAGGAGA          TTTCTCGCTTTCGCT  77 118
        argG NONE
 THEYE_A1064 NONE
 THEYE_A1065 NONE
        topA NONE
        srpB NONE
 THEYE_A1068 NONE
 THEYE_A1069 NONE
        recR NONE
 THEYE_A1071 NONE
         rnr 1043512 .. 1043530 +  -3.2  -5.75342   ACCTGAAGTAAAAAT             TGAAAAAT GAA ATTTTCCA             TTTTTTTTAAGAACA  82 345
 THEYE_A1078 NONE
 THEYE_A1079 1051248 .. 1051266 + -13.2   -2.6078   AAACCTCCTAAATCA             CAGGGCAT ATT ATGCCCTG             TCCATTAATGTTGCT 100 39
      cas6_3 NONE
      cas3_1 NONE
 THEYE_A1089 NONE
 THEYE_A1090 NONE
 THEYE_A1091 NONE
 THEYE_A1092 NONE
        cmr4 NONE
 THEYE_A1094 1067963 .. 1067975 +  -4.1  -3.04239   AGTTAATAAGGAGAG                GCTAT GGA ATGGC                GTTTATATAAATGTA  48 35
 THEYE_A1095 NONE
        csa5 NONE
 THEYE_A1098 NONE
      cas5_1 NONE
      cas4_1 NONE
      cas1_1 1074076 .. 1074100 +  -2.9  -3.66744   ACTGACCCAGATTTC          TCATGAAAATT TTC AATTCCCATGA          TATTGTTATTTCTGA  48 215
THEYE_A1102a NONE
 THEYE_A1105 1075890 .. 1075909 +  -2.9  -3.07236   TTTGAGCCTACCTAT            GAGGAAT TGAAAC ATTTCTC             TCTTAAAATACCTTT  45 345
         mfd NONE
 THEYE_A1107 NONE
        mviN NONE
 THEYE_A1109 NONE
 THEYE_A1110 NONE
 THEYE_A1111 NONE
 THEYE_A1112 1087574 .. 1087600 + -13.8  -3.61517   AATAAAAATTAATAA         GGGCTTGGAAAT CCT ATATCCAAGCCC         TTATTAAAGGAGGGT 100 36
        lysA NONE
        dapF NONE
 THEYE_A1136 1115359 .. 1115371 +  -7.7  -4.11938   ATAATGTGGAAATTG                GAGCT CTA AGCTC                TTTGTCATTAATTTA  78 37
 THEYE_A1139 NONE
 THEYE_A1140 1120844 .. 1120855 +  -5.8  -4.29106   AGCTTTTATTGAGAC                GCTC AGAT GAGC                 TTTCTTGGTATAGAC  69 16
 THEYE_A1141 NONE
 THEYE_A1142 NONE
 THEYE_A1143 1122788 .. 1122800 +  -3.5  -3.35798   AACTTCTTTTTTTAA                TTAAA CTG TTTAA                TTATGCCTAAGAAAT  48 125
        tpiA 1123520 .. 1123536 +  -4.5  -2.57541   TTAGATCCTTTAAAG              TTTGCAA AAA TTGTAAA              GTATTAATTATAAAT  48 2
 THEYE_A1145 NONE
 THEYE_A1146 NONE
 THEYE_A1147 NONE
        pdxA 1127065 .. 1127076 +    -3   -5.4588   GCAGTAAGGATGGAG                GTTT AATG AAAC                 TTTTTTCTCCTTTTG  74 20
 THEYE_A1149 1128624 .. 1128642 +  -7.6   -4.4874   TAAGAGGACTTGTAG             TTTATTGA TTT TCAATAAA             TTTTAAGTTTTTGGA  82 479
 THEYE_A1150 NONE
 THEYE_A1151 NONE
 THEYE_A1152 1131817 .. 1131827 +    -4  -4.57073   AGGAAAACAGTTAAA                 TCTA AAA TAGA                 TTTTTAAACAAAATC  65 16
 THEYE_A1158 NONE
 THEYE_A1159 NONE
 THEYE_A1160 1138829 .. 1138841 +  -6.3  -2.92003   TAAAGTTAGTTGGAG                TAGGT TTT ACCTA                TCTGTCAACTCTTAT  58 110
 THEYE_A1163 1142390 .. 1142400 +  -6.8  -2.76539   TGTCCTGGTCCATAA                 GGAG ATC CTCC                 TCCCTTTGTTAGATA  57 150
 THEYE_A1168 NONE
 THEYE_A1169 1147342 .. 1147359 +  -8.4  -4.60797   AAAGAATAAAGAAAA             GAGGGG CACTGT CCCCTC              TTTTGTCTCTCACGC  85 32
 THEYE_A1170 NONE
 THEYE_A1171 1148072 .. 1148086 +  -5.8  -2.72649   ATTCTTGGACTTAAA               TGATAA ATT TTATCA               CTTATATAGTAAACT  55 479
 THEYE_A1183 NONE
 THEYE_A1184 1159121 .. 1159137 +  -5.1  -4.11216   TTTGATAGACTATAT              TGCGTAG TGG CTAAGCA              TTTTAAAAATGAAGG  62 146
 THEYE_A1185 1159723 .. 1159733 +  -5.4  -4.82111   TTGATTATCTTTTTC                 TCTC TAC GAGA                 TTATTTTTATTTTCT  74 332
 THEYE_A1186 NONE
 THEYE_A1187 NONE
 THEYE_A1188 NONE
 THEYE_A1189 NONE
 THEYE_A1190 1165865 .. 1165896 +  -6.6  -4.19238   CCGCGTCCGAAGGTG      CTACTTCTAAGCAT CTAC ATGCTTAGTGGAAG       TTTTAGGATTCGGAA  71 71
 THEYE_A1197 NONE
 THEYE_A1198 1174809 .. 1174819 +  -2.6  -3.11291   GTTTCTGGAGATGTT                 TATT AGG AATA                 TGTTAAAGTTCTAAA  43 20
 THEYE_A1199 1175127 .. 1175137 +  -5.4  -2.72511   GTCAGTTGAAGAAAA                 GCTT GGG AAGC                 CTTTGAAAACATGAA  52 1
 THEYE_A1200 NONE
 THEYE_A1201 NONE
 THEYE_A1202 NONE
 THEYE_A1203 1177582 .. 1177594 +    -2   -5.1286   ATGATTTCAGGTATC                TTCA CTGTT TGAA                TTTTTGTGATTTTTC  68 14
        leuS 1180252 .. 1180263 +    -3  -3.01791   CATCGTGGTAGCAAA                TTGA AAAT TCAA                 TATTCCAAACACGCT  45 22
 THEYE_A1205 NONE
 THEYE_A1206 NONE
 THEYE_A1207 NONE
 THEYE_A1208 NONE
 THEYE_A1209 NONE
 THEYE_A1210 1182993 .. 1183005 +  -4.9  -3.01802   CTTTTATATGAGTTG                CTTAA AGA TTAAG                ATTTATGCTACTTTA  52 14
 THEYE_A1211 1183460 .. 1183479 +    -8  -2.82623   GAATAGAACGTTCTT            CAAAATGA CACT TCATTTTG             TCATTCTGAGGGGGC  68 68
 THEYE_A1212 1184053 .. 1184069 +  -2.9  -4.27192   TCCCAGTGATTCTGC              TGCCCAT ATT GTGAGCA              TTTTCATGCAGGTTT  55 279
 THEYE_A1215 1186798 .. 1186821 +   -11  -3.27382   ATAGGCAGTTTGTCA          TTCCTAGGGC TTTA GCCCGAGGAA           TCTCTTGTCTTACCA  85 153
 THEYE_A1216 1188434 .. 1188453 + -12.1  -5.69793   TTTGCCAACCATAAA            GGCGGGG AATTCA CCCCGCC             TTTTTTATTTGCTCT 100 115
 THEYE_A1220 1190615 .. 1190625 +    -4  -3.61219   TAAAAGCTTCCTCTG                 TTCT CTC AGAA                 TTTAACAGCTTTTAT  53 47
 THEYE_A1221 1191933 .. 1191972 +  -5.2  -4.86385   GACCCAGAAAGCCAA GAGCCTCTCTGAGA-AAC ATAGCA GTAATCTCA-AGAGGCTC  TTTATTTTTAAAACT  77 112
 THEYE_A1222 1193407 .. 1193419 +  -6.3  -3.29144   GATGGAGTCATTTTT                TGTTG AAT CAACA                TTGTAGCACCCATAA  61 190
 THEYE_A1237 NONE
        pyrB NONE
 THEYE_A1239 NONE
        carA NONE
 THEYE_A1241 NONE
        carB NONE
        purH NONE
 THEYE_A1244 NONE
        purD 1213609 .. 1213621 +  -3.5  -3.02511   GAATCTTTAAAATTC                TTTTA AAA TAAAA                TATTGCGAGAGTGGC  46 31
 THEYE_A1246 1213701 .. 1213712 +  -2.2  -4.64334   GTTCAAATCCCTCCT                CTCG CATT TGAG                 TTTTCTTGCAGGATT  59 16
 THEYE_A1251 1217235 .. 1217245 +  -5.4  -3.28497   GATGCCAAAGATGTT                 GCAA CCA TTGC                 TTCCATTTCAACTCC  55 146
 THEYE_A1256 NONE
 THEYE_A1257 1223072 .. 1223082 +  -2.6   -3.4072   CTTGCGGTTTCCTGT                 TTTT TTA AAAA                 TTATAATACCAACTA  47 128
 THEYE_A1262 NONE
        yihY NONE
        thiD 1229045 .. 1229059 +  -2.1  -2.76815   ATTTAAGGGAGGAGA               CACGT GAAAA ATGTG               GTTCTTGAAACAAAT  40 35
        purC 1229934 .. 1229949 +  -6.2  -5.40625   CTTCTTAAGAATTTC              TCTTAC AGCA GTAAGA               TTTTTTATATCATCT  86 33
 THEYE_A1270 1232481 .. 1232492 +    -3    -4.731   TCTCAAAGAAAATAT                CATT AATG AATG                 TTTTATTCCTCGCTT  65 296
 THEYE_A1273 NONE
 THEYE_A1274 NONE
        ilvB NONE
        ilvN NONE
 THEYE_A1277 NONE
 THEYE_A1278 NONE
 THEYE_A1279 1241497 .. 1241509 +  -4.9  -3.64198   TCAAAATCTTCTTGA                TCAAA GTT TTTGA                TTCTGTCTCTGAAAA  57 433
 THEYE_A1287 1248566 .. 1248582 +  -2.9  -3.15841   GGAGCAATTCTGAGA              ATTGCTG ATG CAGCAGG              TGTTCATGCAGTTAT  45 96
 THEYE_A1288 1250361 .. 1250377 + -10.1  -3.36518   GTATTCTTACAAAAA              TTCGGCG TTT CGCCGGA              TTGTAAGGATTTTAG  82 3
 THEYE_A1289 1250762 .. 1250792 + -12.1  -4.11623   AAATGCCTTGTCTAA       TAAGGTGTTCATT ACAGA GATGAACACCTTA       TTTAATTTAATACTG 100 44
 THEYE_A1290 NONE
       feoB2 NONE
 THEYE_A1292 1254974 .. 1254987 +  -4.5  -3.32354   CACATCAGAATCATA               CGGGT CAAT ACCTG                CTTTTAGTTTAGCAA  51 54
 THEYE_A1294 NONE
 THEYE_A1295 1255661 .. 1255681 +  -2.5  -3.32354   CAAGGCTAAAACACG            GGTTCGAAT CCC GTTGGGACC            GTTTTAATTTAGACA  44 1
 THEYE_A1296 1256739 .. 1256749 +  -6.8  -4.53349   TCTGCTCTCTGAGCA                 GCAG CTT CTGC                 TTTCTTTGCTGCTTC  76 125
        scpB NONE
 THEYE_A1300 1260120 .. 1260136 +  -2.3  -4.70879   TTTCATTTGTAAGGT              CATTAAA TCC TCTAATG              TTTTTAGGATTTCCC  62 420
 THEYE_A1307 NONE
        cydB NONE
 THEYE_A1309 1267508 .. 1267522 +  -5.8    -2.706   CATTGCTGCCTCATA               GATAAA CTG TTTATC               TGCATTTAAATTTTC  55 428
 THEYE_A1312 NONE
 THEYE_A1314 1272715 .. 1272725 +    -4  -4.93877   TCCCATGGGAGATAA                 TCAT TAA ATGA                 TTTTATTTCATAAAG  70 103
        bioF 1294035 .. 1294048 +  -3.9  -3.41671   ATTAACTTTATTAAA               TTCAA TTTT TTGAA                TTAGTTGAATCTTTG  51 13
 THEYE_A1334 NONE
 THEYE_A1335 1296806 .. 1296825 + -13.6  -2.54193   AATCTGAGAATAAAA            GAGGGGGA ATAG TCCCCCTC             TGAATTAAAATGGTG 100 101
 THEYE_A1344 NONE
 THEYE_A1360 NONE
 THEYE_A1361 NONE
 THEYE_A1362 1323599 .. 1323621 +  -9.1  -3.32536   TAATTAAATTTAGAA           GGCGGGG CAATAATCA CCCCGCC           TTATGGAAATGCTTT  77 482
 THEYE_A1372 1330348 .. 1330370 +  -2.6  -5.04265   TTTACCCCCCCCCCC           CCCCGAATGT AGT ATTTTCGGGC           TTTTTGATATTTTTT  66 155
 THEYE_A1373 1331617 .. 1331660 +  -2.6  -5.04082   TCAGCTGGGTCTCCT TCTCTTACAAGAAA-CTTAAT CTC AATAGGTTTTCCTGAAAGAGA TTTTCTTATTCTTTC  69 160
 THEYE_A1380 NONE
 THEYE_A1381 NONE
 THEYE_A1382 NONE
 THEYE_A1383 NONE
        murI NONE
         rph 1342492 .. 1342507 +  -3.3  -2.79915   AAAACTGAAAAAAGT              GAAAG ATTAAC CTTTC               TATCATAGAGTGGAT  45 133
        rpiB NONE
       glyA2 1344322 .. 1344345 +   -14  -4.57581   CTTTTTAAAATTACA          CGGCATTCTT CCTC AAGAATGCCG           TTTGTTATTTCAACT 100 65
        xerC NONE
 THEYE_A1396 NONE
        hslU NONE
 THEYE_A1398 NONE
 THEYE_A1399 NONE
        rumA NONE
 THEYE_A1401 1354416 .. 1354436 +  -4.6  -3.37796   TACAATATTCTGAGG            CGGAGGGG ATTTA TCGCTCCG            TTCTGAATGATAGAA  54 151
 THEYE_A1404 1357502 .. 1357539 + -12.1  -4.43189   TGAGGTATAAACTAA   TGCAGAGAGGGAAGGTA GCAG TATAATCCCTCTCTGCA    TTTTGTAAAATTCAT 100 31
 THEYE_A1405 NONE
 THEYE_A1406 NONE
 THEYE_A1407 NONE
 THEYE_A1408 1362738 .. 1362758 +  -2.6  -4.06778   ACAGGGATTGAACAC            GAATTCAA TAATC TTGATTTC            TTTAAGTTTTTTAAT  53 513
 THEYE_A1410 1363156 .. 1363177 + -10.1  -5.00884   TTAAAATAAGTAATA           AAGGGGCTC GTTT GAGCCCCTA            TTTTTTAAAAAGGAT 100 37
 THEYE_A1412 1364132 .. 1364145 +  -5.3  -3.83026   ATCACCTCGCTCTAA               GAATG GATA CATTC                TTTCATATAAAACAG  61 111
 THEYE_A1415 1366048 .. 1366058 +  -2.6  -4.21098   TTTTTCCAATCAAAT                 TATT GTG AATA                 TTTTCAACTTCCTCT  55 72
 THEYE_A1459 1394117 .. 1394133 +  -2.3  -3.32963   TAGCAGTAGCACCTA              TAGAATA CAT TACTCTA              TTGTCAACTCCGAGT  44 154
       uvrA2 1397681 .. 1397691 +    -4  -5.27938   CTTGTAATAAGCTCA                 GAAA CTG TTTC                 TTTTTCTTTAGACCT  76 348
 THEYE_A1469 1403592 .. 1403602 +  -5.4   -2.7314   GTCACCTTTAAGAAA                 CTTC CTT GAAG                 TAATATAGTTTACAC  51 249
 THEYE_A1474 1410823 .. 1410838 +  -2.6  -3.07816   GAATTACAAAATAAT              TTTGTA GCAA TGCAAA               TTAGATAAGTAAAAG  43 49
 THEYE_A1475 NONE
 THEYE_A1476 1412791 .. 1412802 +    -3  -4.54306   AAAATATCTATTATC                TGAA TTCC TTCA                 TCTTTTTTTGTTGGC  62 477
 THEYE_A1487 1423747 .. 1423758 +  -4.4  -5.95286   AATTTTATGACATTC                TGAG TATT CTCA                 TTTTTTGTTTTTACT  91 333
 THEYE_A1494 1432576 .. 1432592 +  -2.3  -3.02882   TCAGGCGTTTTACTG              TAAAAGC ATT GATTTTA              ATTATTGTTCTGCTT  42 23
 THEYE_A1495 NONE
 THEYE_A1496 1435330 .. 1435343 +  -3.9  -4.77438   CTGTACCATCTCTGA               CATAA ACTT TTATG                TTTTTAATACTAAGT  67 280
 THEYE_A1502 1442043 .. 1442075 + -12.3  -4.59109   TGAAAAATTATAGAA      CTTGTAATTTATTGA GTT TCAGTAAATTGCAAG      TTTTTGAACAGTCTC 100 289
 THEYE_A1503 1443304 .. 1443314 +    -4  -3.46399   CAACTTCCCCTTTTT                 TTAC GAT GTAA                 TCTGTTTTCCCTTTA  51 289
 THEYE_A1513 NONE
 THEYE_A1514 NONE
        rfbF NONE
 THEYE_A1516 NONE
 THEYE_A1517 NONE
 THEYE_A1518 NONE
 THEYE_A1519 NONE
 THEYE_A1520 1458950 .. 1458963 +  -5.3  -2.71011   GCCCTTCAAGTATTG               CTTCA CAAT TGAAG                TACTTGGAAAGCACT  51 401
 THEYE_A1522 NONE
        argJ NONE
        clpS NONE
        clpA NONE
         aat NONE
 THEYE_A1527 NONE
 THEYE_A1528 1466380 .. 1466395 +  -4.7  -4.15044   GAGTGTCATGAGCTT              TCCTG TGACTC CAGGA               TTTCTTGCAGAACCC  64 231
 THEYE_A1531 NONE
 THEYE_A1532 1469037 .. 1469052 +    -4  -3.56262   CTGTTCTACATATCC              TCCATA ATCA TGTGGA               TATTTATAACCTTTC  52 76
 THEYE_A1535 NONE
       fabD1 1472387 .. 1472429 + -18.6  -5.27335   GCTTAAATATTTCAA GGCAGACAACACAGGGGC GGATTTA GCCTCTGTATTGTCTGCC TTTTTATTTGAAACC 100 132
       aroF1 1473624 .. 1473649 +  -2.5  -5.19275   GCCATAAAAATAAAC         ATTGCAAGAGA AACA TCTCTGGCAGA          TTTTGTTTTATAAAT  69 161
 THEYE_A1539 NONE
 THEYE_A1540 1475914 .. 1475926 +  -7.7  -3.28712   TAAACTTAATGTAAA                GAGTC TTT GACTC                TTATAAAACACACGC  69 58
        rpsB NONE
         tsf NONE
        pyrH NONE
         frr NONE
 THEYE_A1545 1479110 .. 1479136 +  -9.4  -3.76224   AAAAGACCATTTGAA         GGGGCTGTCTGC ATA GTAGATGGCCTC         TTTCCTGACTCAAAA  81 59
 THEYE_A1547 1481484 .. 1481513 +  -6.5  -3.24021   GGAAACTCCTTACTA       CACTCAAAATGAC ATAG GTTATCTTGGGTG        TTCACTATTTGAGAG  61 402
 THEYE_A1555 NONE
 THEYE_A1556 1491982 .. 1492013 + -14.7  -2.89523   GATTACTCACGGAAT      TCATTCTGAGCAT TTAACC ATGCTCAGAATGA       CTATTTATTTAAATG 100 124
        radA NONE
 THEYE_A1558 NONE
        ksgA NONE
 THEYE_A1560 1495404 .. 1495420 + -13.7   -3.0806   ATGTTGGTAAAATAA              GAGGGGC TTT GCCCCTC              TATTAAAAATTTAAG 100 31
 THEYE_A1561 1495811 .. 1495827 + -10.8  -4.08767   GATGGTAAAAATAAA              GGGGGC ATAAA GCCCCC              TTTTAAAGGGCTAAA  93 33
 THEYE_A1562 1496505 .. 1496515 +  -5.4  -3.62046   ATAATTCTCTGTTTT                 GAAG TTT CTTC                 TTCTTCAGGCAATCC  59 274
 THEYE_A1564 NONE
 THEYE_A1565 NONE
 THEYE_A1566 1499856 .. 1499867 +    -3  -2.68886   AGAAGGAGCAGAGCA                GATA ATGC TATC                 TAAATTCTTCCTTGA  42 21
 THEYE_A1567 NONE
 THEYE_A1568 NONE
 THEYE_A1569 1505466 .. 1505482 +  -2.4  -2.89981   AGTTTGCATAAATTT              TTTAAA TATTT TTTAAA              TCTGGTATGATTATC  42 105
 THEYE_A1570 1506362 .. 1506378 +  -3.7  -3.72576   AAACTACCTCTTATT              GGAACTT TAA AAATTCC              TTTAATCACGAAAAA  55 395
 THEYE_A1573 NONE
 THEYE_A1574 1509697 .. 1509716 +  -7.2  -3.63991   ATGTAAAAGTGCACA            GGCA-AGAG TAA CTCTCTGCC            TTATTCCAAGTGGTA  68 517
 THEYE_A1577 1512509 .. 1512534 +  -4.5  -4.07568   GGGAGGGATTCGAAC         CCTCGGTGAGG TTAC CCCCACAGCGG          TTTTCGAGACCGCCC  59 47
       trmU1 1513975 .. 1514004 +  -8.7  -3.46873   GTGGTAAAATCTATT       GTTATGTCTTTGCC AGA GGCAAAG-CTTAAC       TCTTGTTCAATTTCA  75 358
 THEYE_A1584 NONE
 THEYE_A1585 1518567 .. 1518579 +  -2.7  -2.84572   AGATTCAGGAAGGAG                TGTCA CTG TGATA                GCTTTTGTTTTTCCT  42 15
        fabD NONE
        mdh1 NONE
 THEYE_A1588 1520839 .. 1520853 +  -3.6   -3.9243   AGATTCCCTATTTCT               TTTCTG CCT TAGAAA               TTCTTTAAAAAATTC  54 3
 THEYE_A1596 NONE
       dapB1 1530752 .. 1530762 +    -4    -4.285   TCCTCAAAAATTAAT                 CTTT CAA AAAG                 CTTTTTTTCTTTTTC  62 163
 THEYE_A1600 NONE
       panE1 NONE
 THEYE_A1602 NONE
 THEYE_A1603 NONE
       argB1 NONE
 THEYE_A1605 1539333 .. 1539344 +    -3  -3.26237   GTGAGTTTTTTGCTT                CAAT GGAA ATTG                 TAATTTTTGAAATTC  46 11
 THEYE_A1606 1540186 .. 1540197 +  -2.2  -4.74787   CTGTTTTTAAATTCC                CTGT GGAA GCAG                 TTTCTTTCTGTTTAT  62 449
 THEYE_A1613 1544724 .. 1544738 +  -5.8  -5.42198   TGTCCACTCTCTATT               GAATAA GGT TTATTC               TTTTATTTTTTCAAC  86 313
 THEYE_A1614 NONE
 THEYE_A1615 1548233 .. 1548259 +  -5.2  -3.22298   AGCGTAAGCGAAGGG         TCTCCTCCTT AAATCGG AAAGAGGAGA         TTCCTCGTCGCTAAC  56 109
 THEYE_A1616 NONE
 THEYE_A1617 NONE
 THEYE_A1618 1551059 .. 1551070 +    -3  -2.68886   AGAAGGAGCAGAGCA                GATA ATGC TATC                 TAAATTCTTCCTTGA  42 21
 THEYE_A1619 NONE
 THEYE_A1620 NONE
 THEYE_A1621 1556669 .. 1556685 +  -2.4  -2.89981   AGTTTGCATAAATTT              TTTAAA TATTT TTTAAA              TCTGGTATGATTATC  42 105
 THEYE_A1622 1557565 .. 1557581 +  -3.7  -3.72576   AAACTACCTCTTATT              GGAACTT TAA AAATTCC              TTTAATCACGAAAAA  55 395
 THEYE_A1625 NONE
 THEYE_A1626 1560900 .. 1560919 +  -7.2  -3.63991   ATGTAAAAGTGCACA            GGCA-AGAG TAA CTCTCTGCC            TTATTCCAAGTGGTA  68 517
 THEYE_A1629 1563712 .. 1563737 +  -4.5  -4.07568   GGGAGGGATTCGAAC         CCTCGGTGAGG TTAC CCCCACAGCGG          TTTTCGAGACCGCCC  60 47
       trmU2 1565178 .. 1565207 +  -8.7  -3.46873   GTGGTAAAATCTATT       GTTATGTCTTTGCC AGA GGCAAAG-CTTAAC       TCTTGTTCAATTTCA  75 358
 THEYE_A1636 NONE
 THEYE_A1637 1569770 .. 1569782 +  -2.7  -2.84572   AGATTCAGGAAGGAG                TGTCA CTG TGATA                GCTTTTGTTTTTCCT  42 15
       fabD2 NONE
        mdh2 NONE
 THEYE_A1640 1572042 .. 1572056 +  -3.6   -3.9243   AGATTCCCTATTTCT               TTTCTG CCT TAGAAA               TTCTTTAAAAAATTC  54 3
 THEYE_A1648 NONE
       dapB2 1581955 .. 1581965 +    -4    -4.285   TCCTCAAAAATTAAT                 CTTT CAA AAAG                 CTTTTTTTCTTTTTC  62 163
 THEYE_A1652 NONE
       panE2 NONE
 THEYE_A1654 NONE
 THEYE_A1655 NONE
       argB2 NONE
 THEYE_A1657 1590536 .. 1590547 +    -3  -3.26237   GTGAGTTTTTTGCTT                CAAT GGAA ATTG                 TAATTTTTGAAATTC  46 11
 THEYE_A1658 1591389 .. 1591400 +  -2.2  -4.74787   CTGTTTTTAAATTCC                CTGT GGAA GCAG                 TTTCTTTCTGTTTAT  62 449
 THEYE_A1665 1595927 .. 1595941 +  -5.8  -5.42198   TGTCCACTCTCTATT               GAATAA GGT TTATTC               TTTTATTTTTTCAAC  86 313
 THEYE_A1666 NONE
 THEYE_A1667 1599521 .. 1599553 + -12.3  -4.59109   TGAAAAATTTTAGGG      CTTGTAATTTATTGA ATT TCAATAGGTTACAAG      TTTTTGAACAGTCTC 100 194
 THEYE_A1668 NONE
 THEYE_A1669 1600513 .. 1600531 +    -6  -2.55847   CCGAAAGGTTTCCTG             CTCATCAT TAA AGGATGAG             ATTCCTCACTTTGTT  54 338
 THEYE_A1670 NONE
        pdxJ NONE
        xseA NONE
 THEYE_A1673 NONE
 THEYE_A1674 1604158 .. 1604172 +  -2.2  -2.76249   GTAAGGATGAATAAC               TTTGAA TTT TTTAAA               TCCTTCAACTATTTC  40 192
 THEYE_A1676 NONE
 THEYE_A1677 1606793 .. 1606813 +  -2.7  -3.81926   TAGCCATATTTCACC            TTTTTGATT TAA AATAAAAAA            TTAATTTTTAAAATC  51 57
       thrC1 NONE
 THEYE_A1679 NONE
 THEYE_A1680 NONE
       thrC2 NONE
 THEYE_A1682 1610891 .. 1610905 +  -2.8  -3.07227   TAAGCTTATGGATTT               TTTCCT TAA AGGCAA               TGTCTGATTTAATAG  43 4
 THEYE_A1683 NONE
 THEYE_A1684 1612512 .. 1612524 +  -3.4  -4.68424   TTTCTTCAGGAGCAA                GATG ATAAA CATC                TTTTTCAATAGGTTC  65 278
 THEYE_A1686 NONE
 THEYE_A1687 NONE
 THEYE_A1688 1619565 .. 1619575 +  -3.2  -4.00532   AGGAAGGTTTTCTGA                 GTCT TCA AGGC                 TTTCATCTTTAAGCC  55 139
 THEYE_A1698 NONE
 THEYE_A1699 1632711 .. 1632727 +  -5.3  -3.18429   TTGCCATTCCAAAAA              TAAATAT AGT ATATTTA              TTAATAAAACTTTTA  56 108
 THEYE_A1700 NONE
 THEYE_A1701 1633549 .. 1633574 +  -6.1  -5.37345   TTTATAAAAATTCTT         TGCTCGCTGAG AGTA TTCGGAGAGCA          TTTTTTCTGCTTCAG  84 62
 THEYE_A1732 1663870 .. 1663880 +  -5.4  -5.14163   CTCATTTATCAACAT                 TGCT CTA AGCA                 TTTTTCTTAATAACT  79 113
 THEYE_A1739 NONE
 THEYE_A1740 NONE
 THEYE_A1741 NONE
 THEYE_A1742 NONE
 THEYE_A1743 NONE
 THEYE_A1744 NONE
 THEYE_A1745 NONE
 THEYE_A1746 1677107 .. 1677121 +  -2.2  -2.70788   TAAAAAGATGGAAAA               TTGAAA CTC TTTTAA               AATTTTTATAAGTGA  40 0
       gidA3 NONE
 THEYE_A1748 NONE
 THEYE_A1749 1679168 .. 1679200 + -14.5  -4.57073   CGAAAAATAGCAGTA      CTTGTAATTTGTTGA AAA TCAATAAATTACAAG      TTTTTGAACAGACTC 100 281
 THEYE_A1750 NONE
 THEYE_A1751 1681475 .. 1681491 +  -3.7  -5.09762   TTAAGTTAAACCGCC              TATACCT TCA AGGCATA              TTTTCTTTGTTAAAA  69 32
 THEYE_A1753 1685930 .. 1685945 +  -4.8  -2.87051   AAAATAAACTATTAT              CATTTA AACT TAAATG               CTTTAATAATAAAAG  51 34
 THEYE_A1763 1696144 .. 1696158 +  -2.8  -3.41569   TAGAGCTTGTACATC               TTGGTT CAT ATCCAA               TGTTTAAATAAATGG  46 0
       hisC2 NONE
       aroF2 NONE
 THEYE_A1766 NONE
        aroA NONE
         cmk NONE
        ispH NONE
 THEYE_A1770 NONE
        sppA NONE
 THEYE_A1772 NONE
 THEYE_A1773 1706197 .. 1706209 +  -5.5  -3.14602   TAAATCTTAAATCTT                TAGCC ATT GGCTG                TCTTAGTGCAATAAG  54 515
       pstS1 1707683 .. 1707730 + -19.5  -3.55071   ACTTTATATCAAATA AAAAAGAGAAAGCCCGAAGCA AAATAA TGCTTTGGGCTTTCTCTTTTA TTTCAGGAAATCTCC 100 25
       pstS2 1711885 .. 1711902 +  -6.3   -3.9398   AAAACTTCTTCCAGC             TGCTCCA TAGA TGGAGTA              TTTATAAAATTGTGA  69 353
 THEYE_A1785 1717343 .. 1717358 +  -2.6  -3.65353   AAAAATTCAATACAA              TTATGT TACC ACATGA               TTTGAAATCATTTAA  48 10
 THEYE_A1786 NONE
 THEYE_A1787 1718794 .. 1718810 +  -3.7  -3.11459   AAGAGGGTTACATTT              TATTTGC GTT GCAAAAA              TTGAATAATAATGTT  46 253
 THEYE_A1788 NONE
 THEYE_A1789 NONE
        pstC NONE
        pstA NONE
        pstB 1723041 .. 1723052 +  -4.4  -2.63073   TGAATTCAACTTCTG                CCTT ATCA AAGG                 GTCTTATTGACGCAA  47 216
 THEYE_A1801 NONE
 THEYE_A1802 NONE
 THEYE_A1803 1732211 .. 1732232 + -12.3  -5.86976   TCTTTCATTTTATAA           GGTGGGGGA ACAT TCCTCCACC            TTTTTTATTTTATAC 100 44
 THEYE_A1809 NONE
 THEYE_A1810 1737272 .. 1737291 +  -5.8  -3.32844   TTCAGGGGCTGATAA            CTCCTACCT TAA AGGTAG-AG            TTATACCCTGAAAAG  59 116
 THEYE_A1811 NONE
 THEYE_A1812 1739001 .. 1739011 +  -5.4   -3.4489   TTAAATCTAAAGGGG                 GCAT AAG ATGC                 TTAGTTATCAAGATT  58 121
 THEYE_A1813 1739692 .. 1739702 +    -4  -4.37092   ATAGCTGGGTAAGTT                 GATT GAA AATC                 TTTTATAAAAAACAT  62 515
        hisD 1744513 .. 1744533 +  -4.1  -4.93079   TTACAGATGGAGCAA            TTTTTGACA CTT TTTCAAAAA            TTTGTTTCTTTTCTT  73 65
 THEYE_A1821 NONE
 THEYE_A1824 NONE
 THEYE_A1825 NONE
        rpsO NONE
 THEYE_A1827 NONE
 THEYE_A1828 1754147 .. 1754166 +  -6.3  -2.94888   CATTGAAAAATAAAA            AGGGCGG ATAACC CCGCCCC             TACTTTAAATCAATT  58 28
 THEYE_A1838 1764788 .. 1764808 +  -5.5  -3.42593   CAATTCCTTCGCCTA            TTCCGATTA ACT TAATAGGAA            TTCCTATCTCTTTTT  57 93
 THEYE_A1841 NONE
 THEYE_A1842 NONE
        mreC NONE
 THEYE_A1844 NONE
 THEYE_A1845 NONE
        mrdB NONE
        ribH NONE
        nusB 1774397 .. 1774411 +  -5.8  -2.99325   AACTTGACAAAAAAA               TTTAGT ATT ACTAAA               ATTTAATTCTAAGAG  57 347
 THEYE_A1849 1775737 .. 1775747 +    -4  -5.40474   AAAATGGGCAAAAAT                 TATC GTG GATA                 TTTTTTTGCCCAAAT  77 63
 THEYE_A1850 1777410 .. 1777436 + -13.8  -3.60971   TTTAAGCTAATCTTC         TTAAGGAGAGGC TCT GCCTCTCCTTCA         TTTCAAAATTAAAAT 100 31
 THEYE_A1851 NONE
 THEYE_A1852 NONE
 THEYE_A1853 NONE
 THEYE_A1854 NONE
 THEYE_A1865 1788699 .. 1788713 +  -3.6   -3.4853   CATAACTGATTAATT               TTTTAG AGT CTGAAA               TCTCTCTTTTTTTTG  51 406
 THEYE_A1868 NONE
 THEYE_A1869 NONE
        glmU NONE
        glmS NONE
 THEYE_A1872 NONE
        gatC NONE
        panD 1797931 .. 1797941 +  -5.4  -3.46144   GTATGATTAATTGTG                 CCAA GTG TTGG                 TCTTGTTACTAATAT  57 278
 THEYE_A1876 NONE
 THEYE_A1877 1799807 .. 1799817 +  -5.4  -3.97056   TGCTTCAATAAGCAT                 TTCC TCT GGAA                 TTTCATCTATTCTTG  63 128
        infB NONE
        rbfA 1804345 .. 1804356 +  -2.2  -3.53444   AAGAGATAAAGAAGA                CTTC GGAG GAGG                 TTTGAGACCACCTGA  46 9
 THEYE_A1886 NONE
 THEYE_A1887 1806163 .. 1806178 +  -4.8  -3.27715   TTCATAGATATAAAA              TATGAT TGCC ATCATA               GTTTTCCTCTGTTTT  54 34
 THEYE_A1888 1807032 .. 1807053 +  -4.5  -2.71731   TTCTTTTTTTACCAA           TTCCTTGAA TTTT TTCAAGTAA            TGATTCAAAGGTAGC  47 158
 THEYE_A1918 1838924 .. 1838934 +  -2.6  -3.14848   GTATACGGTGTTAGA                 TTAA ACT TTAA                 CTTTTAATGGAGGAG  43 8
 THEYE_A1919 NONE
 THEYE_A1920 NONE
 THEYE_A1921 NONE
        cbiQ NONE
 THEYE_A1923 1842494 .. 1842508 +  -5.8  -4.01902   CTGTTTCATCATTTT               TTTCAT TTC ATGAAA               TTGTTTGATAAGTCT  67 92
 THEYE_A1945 NONE
 THEYE_A1946 NONE
 THEYE_A1947 NONE
 THEYE_A1948 NONE
 THEYE_A1949 NONE
 THEYE_A1950 1863870 .. 1863887 +  -4.9  -3.97681   TATCAGTATCAATCT             TAGGATT GCTT AGTCCTA              CTTTTTTTAATTCCT  62 344
        hisA NONE
 THEYE_A1956 NONE
 THEYE_A1957 NONE
        hisF 1870086 .. 1870099 +  -5.3  -3.49419   CAAATTAAACTGTTT               TTTGC TCTT GCAAA                CTTTTTGTCAGCAAA  58 101
 THEYE_A1959 NONE
 THEYE_A1961 NONE
 THEYE_A1962 NONE
 THEYE_A1963 1875411 .. 1875423 +  -4.1  -4.55491   AAACATTATCTAAGC                CGAGA ATA TCTTG                TTTTATAATTCCATC  67 520
 THEYE_A1966 1877098 .. 1877110 +  -3.5  -3.16323   AGTTTCAAAGGAAAT                TAAAT GAG ATTTA                TTGATACGAACTTTT  46 19
 THEYE_A1967 1877780 .. 1877791 +  -4.4  -4.39998   GTTACAGAGGCAGGA                GGAA AAGT TTCC                 TTTATTATGTCAATA  64 291
 THEYE_A1972 1882545 .. 1882555 +  -3.2  -3.65426   ATATAAAGATTCGCT                 TTGC TTA GCAG                 TTTAGCGATTTCTAC  50 241
 THEYE_A1974 NONE
        cysS NONE
 THEYE_A1976 NONE
 THEYE_A1977 NONE
 THEYE_A1978 1891723 .. 1891757 +  -7.8  -2.51871   CTGTGCAATTACTAA     CTTTCATTCCTCTGGC ATT GCCCGAGGAATGTGAC     CCTTTTACTGTCACC  64 156
 THEYE_A1979 NONE
 THEYE_A1980 1894813 .. 1894823 +  -2.6  -2.86203   AATTTTAGCTTGCAT                 TTTT TCT AAAA                 CTTATGTTATGCTAA  42 33
         rrf 1895073 .. 1895089 +  -7.3   -4.2828   GTTATAAAAGATTAG              CTTTGCA TTT TGCGAAG              TTTTAGTACCTGCCA  76 137
 THEYE_A1982 1895351 .. 1895367 + -10.8  -3.78736   AGTCTGACAACCTGA              GGGGGC TTTCT GCCCCC              TTTAATAAATCTCTC  90 34
        lipA NONE
 THEYE_A1984 NONE
 THEYE_A1985 NONE
 THEYE_A1986 NONE
 THEYE_A1987 NONE
 THEYE_A1988 NONE
 THEYE_A1989 NONE
 THEYE_A1990 NONE
 THEYE_A1991 1904512 .. 1904532 +  -2.5  -2.63112   CATGTTCTCCTGATA            TAGCTCCTC CAA GAGAAACTA            TAATCTCAAAAATTT  41 140
        dsrA NONE
        dsrB 1911670 .. 1911692 + -13.5  -2.88667   GGACTAAATAAGTAA           GAAGGAGGG GGTAA CCCTCCTTC           TCAATTTTTATGAAA 100 30
 THEYE_A1996 1911974 .. 1911991 + -11.3  -5.79595   ATAATTTTTTTTAGA             GGAGGGA TTAA TCCCTCC              TTTTTTATTTTAAAG 100 52
 THEYE_A1997 NONE
 THEYE_A1998 NONE
 THEYE_A1999 NONE
        ligA NONE
 THEYE_A2001 1915971 .. 1915996 +  -6.9  -4.38876   GTTTTTCTGTTACCT         CTCTGAGAACAG GAA CTGT-CTCAGCG         TTTATATATTTTTCC  78 412
       pilB2 NONE
 THEYE_A2005 NONE
 THEYE_A2006 NONE
 THEYE_A2007 NONE
 THEYE_A2008 NONE
 THEYE_A2009 1924123 .. 1924133 +  -5.4  -3.02829   AAGGCTGAGGCCACA                 GGTT CGA AACC                 TGTTCCGCCCATGTG  54 1
 THEYE_A2010 1924301 .. 1924313 +  -4.1  -5.31275   AAAACTTTTTATCAA                GTAGT TTT ACTGC                TTTTTTATGGTGAGA  74 94
 THEYE_A2011 1925526 .. 1925538 +  -4.9  -2.71712   TTATTGAGAAAATGC                TGATA TAT TATCA                ATTTAAAGAAAGGAG  50 121
 THEYE_A2012 1926332 .. 1926353 +    -3  -3.36166   CTTTTCTTTCATTAT           GAGGCTTT AGCCGA AGAGTCTC            CTTATTTTTTACAAA  46 98
 THEYE_A2013 NONE
 THEYE_A2014 1929154 .. 1929164 +  -2.4  -3.95584   TTAATTGCAAGGGTC                 ACCC CGA GGGC                 TTTCCTTGATGAAAC  51 102
 THEYE_A2016 1930722 .. 1930733 +  -3.6  -3.61517   AAACAGGGACTAAAT                CCTC TGGC GGGG                 TTGTTAAGAAAAACT  52 366
 THEYE_A2018 1931380 .. 1931392 +  -4.8  -3.27907   TGAAACCTTGAGGCT                GCCT GTCAG AGGC                TTGGCTTGTCTATGC  54 30
 THEYE_A2019 NONE
 THEYE_A2020 1931965 .. 1931986 +  -2.3  -2.92668   TTCAGATGAAACTAC           TGCTTCTAT TGTT ATGTAAGCA            ATTTCTCCAACCTTT  41 359
 THEYE_A2022 1932435 .. 1932447 +  -7.7  -3.90856   AAACTGTAAAGTAAA                CTACG TAA CGTAG                TTTACTTAAAACCTT  74 106
 THEYE_A2024 1932896 .. 1932911 +  -6.8  -3.95007   ACATCTATCCCTTTT              TCCGCA CAGA TGCGGG               TTCTTGCTTTATATC  69 42
 THEYE_A2025 NONE
 THEYE_A2026 1934012 .. 1934028 +  -5.1  -3.37877   AGATGAAACGTTCAA              CAAACTC TTT GTGTTTG              ATTTTATTGACAACT  56 332
 THEYE_A2027 1934263 .. 1934274 +    -3  -3.22521   CCACATGGTTCAGAT                GAAA CAAG TTTC                 TTAACTTAGTATAAA  46 5
 THEYE_A2028 1934939 .. 1934954 +  -6.2  -3.19656   GAAACAGTGAACTTT              GTTAGA CAAA TCTAAC               TTAGTGAGTGACTTT  61 349
 THEYE_A2029 1935243 .. 1935258 +  -3.3  -2.76249   TTATATCCCACATGG              TTCAG ATGAAA CTGAA               TGCTTGAGATATTTA  44 17
 THEYE_A2030 1935529 .. 1935554 +  -5.5   -4.0371   AAACTGTGTATGCCA         GAAGAAATTGT TTCG GCATTTTCTTC          TTTATATCCCACATG  64 158
 THEYE_A2033 1937008 .. 1937034 +  -2.2  -2.60219   ACCATCCTTTATATC         CCACATGGTT CAGATGA AACCTGGTGG         ATTATCACGCTTCTG  40 341
 THEYE_A2044 NONE
 THEYE_A2045 1950483 .. 1950493 +    -4  -4.26693   GGATTGGTTGTGCGA                 TAGA ATT TCTA                 TTATTGTTTGTTTCA  59 246
 THEYE_A2052 1955286 .. 1955307 +  -5.3  -3.48558   GTAATACTTTCTATT           TTATT-GAGC CTT GCTCCAATAA           TTGATTGCTGTTTAT  57 225
 THEYE_A2088 NONE
 THEYE_A2089 NONE
 THEYE_A2090 1990038 .. 1990050 +  -4.1  -4.56887   TGCCAACCTCAACTA                CTGGA ATG TTCAG                TTTTCTCAGTTTTTC  67 453
 THEYE_A2093 1996280 .. 1996296 +  -6.5  -2.89668   ATAAAATCGTGGGCA              TCTGCCA TTA TGGCAGC              TCTCTCAACCTCTTC  58 391
        glyQ NONE
        glyS 2000876 .. 2000892 -  -5.3  -4.66537   TTTGCTAACATAAAA              TTAAAAT AAA ATTTTAA              TATAGCCTTGAAATA  71 22
 THEYE_A2098 NONE
 THEYE_A2097 NONE
        moaA NONE
 THEYE_A2095 NONE
 THEYE_A2094 1995489 .. 1995503 -  -6.4  -3.90744   GTTCTTTTTAAAGAA               GGGAAA TAT CTTCCC               GAAGGATTTTTATAC  69 414
 THEYE_A2092 1993347 .. 1993359 -  -4.1  -4.08692   TAAGCCTCCTTAAAA                GCTAA AAC TCAGC                TCAACACTGTAAATG  58 7
 THEYE_A2091 1989159 .. 1989170 -  -2.2   -4.1721   AGGCAGAGTTTAAAA                CTCC TGAA GAAG                 TTTTAAATCAGTGGG  54 510
 THEYE_A2087 NONE
 THEYE_A2086 NONE
 THEYE_A2085 NONE
 THEYE_A2084 NONE
 THEYE_A2083 1982396 .. 1982416 -  -3.3  -3.88396   TTCTAAATTAAAATA            TTTAGCATA GTT TATGCCAGA            TTTTGTAAATTATAT  54 121
        fliL NONE
        fliM NONE
 THEYE_A2080 NONE
 THEYE_A2079 NONE
        fliQ NONE
 THEYE_A2077 NONE
        flhB NONE
        flhA NONE
 THEYE_A2074 NONE
 THEYE_A2073 NONE
 THEYE_A2072 1972607 .. 1972622 -  -2.6  -3.45366   TTTTTAATTAATCAA              CTTCTT TTGC AAGAAA               ATTTTTGAGCTTTAG  46 2
 THEYE_A2071 NONE
 THEYE_A2070 NONE
 THEYE_A2069 NONE
 THEYE_A2068 NONE
 THEYE_A2067 1967324 .. 1967337 -  -2.5  -2.65808   ACTCCTAAGAATTTA               TTTTA CAGT TAAAA                CTTTTCTTGAAAGAA  40 9
 THEYE_A2066 NONE
 THEYE_A2065 NONE
 THEYE_A2064 NONE
 THEYE_A2063 1963976 .. 1963986 -  -5.4  -3.53012   TTGTTTTTCTTTAAA                 GCAA ATC TTGC                 TGTAGTAGGAAATTT  58 57
 THEYE_A2062 NONE
        flgG NONE
 THEYE_A2060 NONE
        flgH NONE
        flgI NONE
 THEYE_A2057 NONE
 THEYE_A2056 NONE
 THEYE_A2055 NONE
        flgK NONE
        flgL 1954830 .. 1954855 -  -9.1  -3.73647   GTTAGCGATGAAGAA         TCTCCTCCCTT TCTA AAAGGAAGAGA          CCCCTCGGCTTCGTC  80 269
        csrA NONE
 THEYE_A2050 NONE
 THEYE_A2049 NONE
 THEYE_A2048 NONE
 THEYE_A2047 NONE
 THEYE_A2046 1950113 .. 1950138 -  -7.6  -2.68886   TCAATGAACAATGTA         GGTCCTGC ACTTGGCGAA GCAGGACC          CGCTGGCAACTACTT  63 124
      cas6_4 1946432 .. 1946443 -    -3  -3.15574   TTAATGTTATTAACA                TAGA CACT TCTA                 TATAAATTCTCTTTA  45 119
        cst1 NONE
        cst2 NONE
      cas5_2 NONE
      cas3_2 1940850 .. 1940871 -  -8.9  -3.03771   TCATACTCCCTAATA           TTTTGGTAA TATA TTACCAAAA            ATTACAGATTTTTGC  74 63
 THEYE_A2038 NONE
      cas4_2 NONE
      cas1_2 NONE
 THEYE_A2035 1937981 .. 1938004 -    -7  -2.72559   CGATTAAATAAGGCA          TTTTAATTTA TTCC TAAATTAAAA           TCTAAGATTCTTCGC  59 20
      cas2_3 1937567 .. 1937588 -  -4.5   -3.2756   AATCGGAATAATATA           GGTAATTCCA ATT CGGAAT-ACC           ATATGTAAATTCCAC  52 152
        gltX 1915748 .. 1915765 -  -2.7  -3.15579   GCAACTCTTTATCAA             GAGGCATC TAT GAC-CCTC             CTTAATCTCTTTAGT  43 4
 THEYE_A2002 1915447 .. 1915469 -  -9.2   -2.8552   GTCTATGGAGTAAAT           GAAGCAGTTT TTA AAGCTGCTTC           TTTCAGACTTTCCCT  73 134
 THEYE_A1993 NONE
 THEYE_A1992 1904223 .. 1904234 -  -4.4   -4.2757   TTTAAAAAAACAGAA                GGAA AAAT TTCC                 TGAAATAGCACAACT  64 163
 THEYE_A1973 1882033 .. 1882045 -  -3.5  -3.90298   GGCAATGAAACAGAA                TTTTT TTC AAAAA                TAAAGGCAGGGCTCA  55 278
 THEYE_A1971 NONE
 THEYE_A1970 1879381 .. 1879391 -    -4  -4.08279   AGAGTTTATAAAGAA                 CATT TTA AATG                 CCACTCAAAATAGTG  58 41
 THEYE_A1969 NONE
 THEYE_A1968 1877288 .. 1877298 -    -4  -3.95449   GTACAAGAGAGGAAA                 TAAG AGA CTTA                 GTTTTACCATTAATT  57 242
 THEYE_A1965 1876234 .. 1876246 -  -3.5  -4.35524   CTTTTAAAGTGAAAA                TATTT TGG AAATA                TTATAAACCTCCACC  61 26
 THEYE_A1964 1875108 .. 1875120 -  -3.5   -5.7946   TTTTGAAGAAAAAAA                TAAAA ATT TTTTA                GAATAATTCAAAATA  84 23
 THEYE_A1960 1869891 .. 1869910 -  -6.4  -3.15861   GAGCATCTTTATGAA            GCTTTTGC TTAT GCAAAGGC             AGATGCAGCACTTGC  61 170
 THEYE_A1954 NONE
 THEYE_A1953 1865716 .. 1865727 -    -3  -3.91488   AAGCCTTGTAAATAA                CTTT CATT AAAG                 AATGCCCTTTTTGAG  52 20
 THEYE_A1952 NONE
 THEYE_A1951 1863157 .. 1863170 -  -3.1  -3.61175   GAGATATTAGAAATA               GAAGA AATT CCTTC                ACTTTTTCAAAGAAT  50 408
 THEYE_A1944 1858905 .. 1858919 -  -2.8  -2.98823   CTGCCCTCAGAGAGA               CAGTTA AAT TAGCTG               GGTTTCAGTATAATA  43 44
 THEYE_A1943 NONE
 THEYE_A1942 1855998 .. 1856019 - -11.6   -4.8622   CTCTCCAATTAAAAA           GCCCTCCT ATGATA AGGAGGGC            TTAGTTTTTTTATTC 100 48
 THEYE_A1941 NONE
        hypC NONE
 THEYE_A1939 1855045 .. 1855058 -  -2.4  -2.63858   CACCATATGGACAAG               GATG CTGTTC CATC                ATTAAATCCTTATTG  40 27
 THEYE_A1938 NONE
         dcd 1852585 .. 1852606 -  -2.3   -2.6648   AAAATCAAGAGCAAT           TATTACCCT GTCT AAGGTCATA            TTTTAGGAAGCACTA  40 21
        pyrF 1851828 .. 1851882 -  -4.7  -3.91465   TTTTAAAAAAGAAGA TATCAAATCGGAAAGAGATTCTATAT TGAT ATATAGAA-CTATTTTCATTTTGATA AATAATTTAACATAA  60 50
 THEYE_A1935 NONE
 THEYE_A1934 1851263 .. 1851273 -    -4  -5.56263   ATGACAAAAGAAAAA                 GAAA CCT TTTC                 GGATAAAATTCCTCA  81 95
 THEYE_A1933 NONE
        pyrE NONE
 THEYE_A1931 1849227 .. 1849239 -  -4.9  -3.70902   CGTTCCATAGTTAAA                CAATA ACA TATTG                AGTTGATTTATATCA  58 77
       dnaJ2 NONE
 THEYE_A1929 NONE
 THEYE_A1928 1845140 .. 1845156 -  -2.9  -2.59683   ACTCCATTTTACAAT              GGACATG ATA CACCTCC              TCAATTTATCTTAGG  42 36
 THEYE_A1927 1844664 .. 1844690 - -17.4  -3.82031   TCAATTATTATCAAA         TTCCTCGGAGCA TGA TGCCCCGAGGAA         TATAATTATTCTAAA 100 31
         trx NONE
 THEYE_A1925 NONE
         ffh 1842215 .. 1842234 -    -5  -5.26316   GGAGGGGAGAAAAAA            CTTGTTGC CTTA GCAACAAT             TATTGCGATGAAACC  80 222
 THEYE_A1917 1836941 .. 1836951 -  -2.6  -2.87931   GGTATTTTTCACATA                 TTTA CAA TAAA                 ATCATGAGCAATGTC  42 46
 THEYE_A1916 NONE
 THEYE_A1915 1834730 .. 1834744 -  -2.8  -3.05963   ACTCCTACTTCAATA               CAAAGG CTA CTTTTG               CAGAGGCAAAGAAGT  43 0
 THEYE_A1914 NONE
 THEYE_A1913 NONE
 THEYE_A1912 NONE
 THEYE_A1911 NONE
 THEYE_A1910 NONE
 THEYE_A1909 NONE
 THEYE_A1908 1824822 .. 1824843 -  -2.3  -2.94705   CATAATGGAATTATA           CCTGATTTT TAAA AAATTCAAG            ACTTTTTTCTGATTT  41 57
 THEYE_A1907 NONE
 THEYE_A1906 NONE
 THEYE_A1905 NONE
 THEYE_A1904 1822171 .. 1822181 -    -4  -3.17615   CATAAAGAGACAAAT                 TTTG ATA CAAA                 TTTTAAAAGTTCGGA  48 28
 THEYE_A1903 NONE
 THEYE_A1902 1820681 .. 1820703 - -13.5  -5.02476   ACATTTTTTAAAAAA           TCGGGCTGA TTTGT TCAGCCCGA           TTGAAATTTACATGA 100 86
 THEYE_A1901 NONE
 THEYE_A1900 NONE
 THEYE_A1899 NONE
 THEYE_A1898 1816790 .. 1816803 -  -8.1  -3.53722   CTTAGAGTTATATAA               GCTCC TCAA GGAGC                TCCACTAAATTGTAT  73 76
 THEYE_A1897 NONE
 THEYE_A1896 NONE
 THEYE_A1895 NONE
 THEYE_A1894 NONE
 THEYE_A1893 NONE
 THEYE_A1892 NONE
 THEYE_A1891 1810700 .. 1810726 -    -3  -4.12474   AACTAATAATAACAA         CCAGTATAGAAC AAA ATCCTATACAGA         AAAATATAAATAACT  55 40
 THEYE_A1890 NONE
        uvrC 1806579 .. 1806598 -    -5  -2.72511   CTCATCTCTGTAAAT            GCATCATT TTTG AAGGATGC             TCATTTGCTAATTGC  50 310
        rpmB NONE
 THEYE_A1882 1801005 .. 1801015 -    -4  -3.33009   TAAAATCTGTCATAA                 TAAG CTC CTTA                 ATCTTTATTTACCTT  49 34
 THEYE_A1881 NONE
 THEYE_A1880 NONE
 THEYE_A1879 NONE
 THEYE_A1878 1799511 .. 1799538 - -15.8  -4.08767   TTGAGTTTTGGAAAA        GGCTCAAAGAAA AGAT TTTCTTTGAGCC         CGAATATTCAATTTT 100 186
        bioD 1797316 .. 1797332 -  -5.1  -3.03338   AGAAGTTTTTTAAGA              GCCAAAC TAC ACTTGGC              AAAAGTAACAGAGGC  52 374
 THEYE_A1867 NONE
 THEYE_A1866 1788220 .. 1788232 -  -2.7  -5.10077   AAAGATTTTAAAAAA                TCTCT TTC AGAAA                AATTCAAATTTTCAA  69 130
 THEYE_A1864 1786808 .. 1786825 - -12.7  -3.66908   CCTCCCTAAAATTAA             CCGGAGG AAAG CCTCCGG              CTTACTCTGCCTTTT 100 27
 THEYE_A1863 1786414 .. 1786427 -  -2.4  -2.71364   TTACCCTCCTAATTA               CCAA AAATTG TTGG                TGGTGCGTATTTATG  40 5
 THEYE_A1862 NONE
 THEYE_A1861 1785450 .. 1785482 - -12.3  -4.59109   GAGACTGTTCAAAAA      CTTGTAACCTATTGA AAT TCAATAAATTACAAG      CTCTAAAATTTTTCA 100 245
 THEYE_A1860 NONE
 THEYE_A1859 NONE
 THEYE_A1858 NONE
 THEYE_A1857 1782219 .. 1782246 -  -4.3  -5.45652   ATTGTCAACAAAAAA        TTTCAATACTT ACTGAA AAGGATTGAAA         TATAATAGCAAAATG  81 128
 THEYE_A1856 NONE
 THEYE_A1855 1781154 .. 1781182 -  -2.5  -4.57837   ACACTCTGGCAAAAA       GGCATTAACTAC GATGAA GTAGTTG-TGCC        AGATATCAATGAACA  60 321
 THEYE_A1840 NONE
        ftsY 1764683 .. 1764693 -  -3.2  -2.57132   CGTCGGGCTCATAAC                 CCGA AGG TCAG                 AGGTTCAAATCCTCT  42 52
        rdgB 1763922 .. 1763936 -  -2.9  -2.57132   TTTTTGGGTTAGAAT               TAAAC TTTTG GTTTA               TAATTTAACCTATTA  42 72
         adk NONE
         sat NONE
 THEYE_A1834 NONE
        aprB NONE
        aprA 1758929 .. 1758949 - -14.7  -4.19735   TTGTTTAAAATTAAA            GGGAGGGGA AAT CCCCCTCCC            TAACTCAACTGTATT 100 39
 THEYE_A1831 NONE
 THEYE_A1830 NONE
 THEYE_A1829 1754148 .. 1754165 - -10.5  -5.63236   ATTGAAAAATAAAAA             GGGCGGA TAAC CCCGCCC              CTACTTTAAATCAAT 100 40
 THEYE_A1823 1746843 .. 1746873 - -12.1  -4.59773   TTGCACTTTTAAAAA      TA-TTTAGGGGGAG AAAA CTCCCCCTAAAATA       AATTTTCAAAAATTA 100 38
 THEYE_A1822 1745629 .. 1745639 -  -2.6  -4.32905   AAAAATTTAAAACAA                 TAAA AAT TTTA                 TAAATCAGAACCAAT  55 53
 THEYE_A1820 NONE
 THEYE_A1819 NONE
 THEYE_A1818 1744109 .. 1744125 -  -4.5  -2.82623   TCGGCGCGATAATTA              TTGTAAA ATC CTTACAA              GAAGCCTGCAATATT  48 366
 THEYE_A1816 NONE
 THEYE_A1815 NONE
 THEYE_A1814 1738691 .. 1738701 -  -2.6  -5.04385   GAGAGTTTGAAAAAA                 TATT GCC AATA                 GCAAAAGCACATTCA  69 523
 THEYE_A1808 NONE
 THEYE_A1807 1734370 .. 1734400 - -12.2   -5.0133   GACTCTGGCAAAAAA       TTGTAATTTATTGA GAA TCAATAAACTACAA       GTTCTGATATTTTCC 100 108
 THEYE_A1806 NONE
 THEYE_A1805 NONE
 THEYE_A1804 1732211 .. 1732232 - -10.1  -3.32844   TCTTTCATTTTATAA           GGTGGGGGA ACAT TCCTCCACC            TTTTTTATTTTATAC  82 35
 THEYE_A1800 NONE
        proC 1727285 .. 1727297 -  -3.4  -2.92026   GATTTCAACATTACA                CAAC ACTAA GTTG                TTGAGCTCTTTTAGT  45 8
 THEYE_A1798 NONE
 THEYE_A1797 NONE
        hisS NONE
        rfaE NONE
 THEYE_A1794 NONE
 THEYE_A1793 1722683 .. 1722702 -  -5.8  -2.98966   TCATTAAAAGATAAG            GTAACAAT TATA ATTGTCAC             TCATAATATGCAGCA  57 170
 THEYE_A1784 NONE
 THEYE_A1783 NONE
 THEYE_A1782 NONE
 THEYE_A1781 NONE
 THEYE_A1780 1712317 .. 1712344 -   -12  -3.33885   AATTCAAATTATTAA        GCCCTGAGCATT ATTT AAAGCCCAGGGC         TTTCTGTAGGAGGGG  89 60
        aroD 1711297 .. 1711307 -  -6.8  -2.82742   AGTTTTGCAGAAGCA                 GCAG CTT CTGC                 TCATCTTGATGCAAA  58 311
 THEYE_A1777 NONE
 THEYE_A1776 1707688 .. 1707725 - -17.2  -5.69793   ATATCAAATAAAAAA   GAGAAAGCCCGAAGCA AAATAA TGCTTTGGGCTTTCTC    TTTTATTTCAGGAAA 100 117
        phoU 1705252 .. 1705265 -  -2.4  -2.96235   CAGAGAGTAATGATA               GCAA TGGCTG TTGC                ATGTGAGCCAGAGCT  42 472
 THEYE_A1762 NONE
        speE 1693043 .. 1693065 -    -2   -3.1247   ACTCCTCATATTTAA           GTGCTAATGT TTA AAATTATCAC           GATAACCTTAAAAAA  42 51
        hrcA NONE
        grpE NONE
        dnaK NONE
       dnaJ1 NONE
 THEYE_A1756 NONE
 THEYE_A1755 NONE
 THEYE_A1754 1685675 .. 1685697 -    -2   -4.4634   AATCCCAAGAAGAAA           CATTAAACAT CTG ATGCTCAAAG           AGGAGATACAAAAGG  59 257
 THEYE_A1752 1681315 .. 1681325 -    -4  -3.33814   AAAGTGTAGAGAATA                 TTTC TCA GAAA                 TGTTGAAGAATTATT  51 160
       accC2 NONE
        oadA NONE
 THEYE_A1736 1665914 .. 1665928 -  -2.9  -3.09327   GCATTCCACTTAATA               CTTTA TCCAT TAAAG               CCTCCTAAAAAAGTG  45 30
        trpS NONE
 THEYE_A1734 NONE
 THEYE_A1733 1663583 .. 1663597 -  -2.8  -3.30781   TTAACTCAAAGGCAA               CAGCTT ATG AAGATG               CTGATTCTGAAAAAT  45 214
        bioA 1662026 .. 1662037 -    -3  -3.05384   TGCCTCCTCATTCAA                CTAT TTCA ATAG                 TTCAAACCTATTATA  45 19
 THEYE_A1730 1661021 .. 1661037 -  -3.8  -3.13403   CGTGTGTTATTAATA              GAAAAA GTCAT TTTTTC              TGTTGCAATTCAAAA  48 16
        kdsA 1660100 .. 1660114 -  -5.8  -3.66139   GATAGATATTTTAAA               TTTGTT AAC AACAAA               CATATCACAAAATTT  62 127
 THEYE_A1728 NONE
 THEYE_A1727 NONE
 THEYE_A1726 NONE
 THEYE_A1725 1655574 .. 1655613 -  -3.4  -2.77222   ACCACCATTTTAAAC  TCTCCTCTAAGCCCGGGC ATTA GCCCGGGCTAATACTATA   CCCTTGCCTTGTAAT  44 21
 THEYE_A1724 1655247 .. 1655279 -  -4.7  -3.55622   TTTAACTTTTCTAAA      CCCTCTCCTCAGGAG TTT CTCCCTTGGATAAGG      CATTTTTATCCGAAA  56 31
 THEYE_A1723 NONE
 THEYE_A1722 1653515 .. 1653531 -  -5.9  -3.63744   TCTTTTGCTAAAACA              GCTTTCA TTT TAAAAGC              CTCCTTAAGTATTTA  62 13
        thiH NONE
 THEYE_A1720 NONE
 THEYE_A1719 NONE
 THEYE_A1718 1649391 .. 1649423 -  -7.2  -4.59109   GAGACTGCTCAAAAA      CTTGTGATTTATTG GAAAT CAATAAACTACAAG      AGTTTTTGAAGAGGC  80 59
        nifH NONE
        nifD NONE
        nifK NONE
 THEYE_A1714 NONE
        nifX NONE
 THEYE_A1712 NONE
 THEYE_A1711 NONE
 THEYE_A1710 NONE
 THEYE_A1709 1638899 .. 1638914 -  -4.8  -2.63703   ACAATTATGTAGAAC              TTTACA ATTT TGTAAA               TATCTTCATAGAGGC  50 248
 THEYE_A1708 NONE
         amt NONE
 THEYE_A1706 1636199 .. 1636220 -  -8.7  -5.59655   GAAAGCAATAAAAAA           GGCAGGC ATGGTAGA GCCTGCC            TTGTAATGCAAAGAC 100 47
 THEYE_A1705 NONE
 THEYE_A1704 NONE
 THEYE_A1703 NONE
 THEYE_A1702 1633292 .. 1633310 -  -5.3  -3.42459   TATGCAGAAGAGCAA             GAGAACA AAATA TGCTCTC             ATCAAATTTATTCAG  57 231
 THEYE_A1697 NONE
 THEYE_A1696 NONE
 THEYE_A1695 NONE
 THEYE_A1694 NONE
 THEYE_A1693 NONE
 THEYE_A1692 NONE
 THEYE_A1691 NONE
 THEYE_A1690 NONE
 THEYE_A1689 1619133 .. 1619144 -  -4.4  -3.21276   GCTTCTTGCAGAATA                TCTC CATG GAGA                 ACTCATGCATGCACC  51 338
        glnA 1612262 .. 1612291 -  -8.7   -3.3676   GGGAAGATGGTAGAA       GATAGGGG-GAC GATTTAT GTCACCCCTATC       CTTCAGAATTATAGA  74 34
 THEYE_A1675 1603791 .. 1603801 -    -4  -3.89055   ACAGAGCTTGATAAA                 CTTT ATG AAAG                 GCTCTTTAAGCTTTT  55 250
 THEYE_A1664 NONE
 THEYE_A1663 1594032 .. 1594049 -  -3.4  -3.37245   CTATTTTAACAGCAA             CAAGCA TTATTT TGCTCG              GAGTAAAGTAACATC  48 14
 THEYE_A1662 NONE
 THEYE_A1661 NONE
THEYE_A1659a NONE
 THEYE_A1659 1590488 .. 1590498 -  -6.8  -4.26634   AAAAGAATTTTAAAA                 GCTG AAA CAGC                 TTCTATAGTCTCAGT  71 458
 THEYE_A1651 NONE
 THEYE_A1650 1581820 .. 1581838 - -11.7  -4.99947   GGGAATTAAATAAAA             GGGAGGG TTGTC CCCTCCC             AAATTTAGCCTTCAA 100 30
 THEYE_A1647 NONE
 THEYE_A1646 NONE
 THEYE_A1645 NONE
 THEYE_A1644 NONE
 THEYE_A1643 1574629 .. 1574661 - -12.3  -4.59109   GAGACTGTTCAAAAA      CTTGTAACCTATTGA AAT TCAATAAATTACAAG      CCCTAAAATTTTTCA 100 308
 THEYE_A1642 1572728 .. 1572752 -  -6.4   -3.8374   TTAAAAAATTTGAAA          TCGGGTGGCT GTTGA ATCCACCCAA          TTTCTCCAACGTTAT  66 37
 THEYE_A1641 1571926 .. 1571941 -  -5.4  -3.40371   TATGGGAGCAACGAA              TCCTGC TCAG GCAGAA               GAAGGGACAATTAGG  57 134
 THEYE_A1635 1566845 .. 1566864 -  -2.2  -3.17797   CGCAGACATATTCAA            TTATGGAA TTGT TTCAATAA             AAGCATATTTTGGTT  42 6
       rplM2 NONE
       rplI2 NONE
       argC2 1564354 .. 1564375 -  -5.9  -3.45776   TCAAAGGTAGCAGAA           GAAAGCACA GAGG TATGCTTCC            TTAGAGATAAAAGGT  61 470
 THEYE_A1630 1563477 .. 1563487 -  -5.4  -4.66264   TAAAATCCTTAAAAA                 TGCA GGA TGCA                 TACCTCCTGAGATGG  74 225
 THEYE_A1628 1562224 .. 1562250 -  -6.5  -2.87132   TTTTTTTGTTAGAGA         TTCCTCGGGAC ATTTA GTCCCTCGGAA         TGACAAAAAAGGATG  58 64
 THEYE_A1627 1560351 .. 1560364 -  -3.9  -5.37345   TTTAATCAGAAAAAA               TAAAG ACGA CTTTA                TTGAATATGTCAAAC  76 66
 THEYE_A1624 NONE
 THEYE_A1623 1556686 .. 1556710 - -11.6  -3.58329   TAAATATTTTTTAAA          TCTGGTATGA TTATC TCATACCAGA          AGGGAGGTGTTATGT  93 513
 THEYE_A1612 NONE
 THEYE_A1611 1542829 .. 1542846 -  -3.4  -3.37245   CTATTTTAACAGCAA             CAAGCA TTATTT TGCTCG              GAGTAAAGTAACATC  48 14
 THEYE_A1610 NONE
 THEYE_A1609 NONE
 THEYE_A1608 NONE
 THEYE_A1607 1539285 .. 1539295 -  -6.8  -4.26634   AAAAGAATTTTAAAA                 GCTG AAA CAGC                 TTCTATAGTCTCAGT  71 458
 THEYE_A1599 NONE
 THEYE_A1598 1530617 .. 1530635 - -11.7  -4.99947   GGGAATTAAATAAAA             GGGAGGG TTGTC CCCTCCC             AAATTTAGCCTTCAA 100 30
 THEYE_A1595 NONE
 THEYE_A1594 NONE
 THEYE_A1593 NONE
 THEYE_A1592 NONE
 THEYE_A1591 1523426 .. 1523458 - -12.3  -4.59109   GAGACTGTTCAAAAA      CTTGTAACCTATTGA AAT TCAATAAATTACAAG      CCCTAAAATTTTTCA 100 308
 THEYE_A1590 1521525 .. 1521549 -  -6.4   -3.8374   TTAAAAAATTTGAAA          TCGGGTGGCT GTTGA ATCCACCCAA          TTTCTCCAACGTTAT  66 37
 THEYE_A1589 1520723 .. 1520738 -  -5.4  -3.40371   TATGGGAGCAACGAA              TCCTGC TCAG GCAGAA               GAAGGGACAATTAGG  57 134
 THEYE_A1583 1515642 .. 1515661 -  -2.2  -3.17797   CGCAGACATATTCAA            TTATGGAA TTGT TTCAATAA             AAGCATATTTTGGTT  42 6
       rplM1 NONE
       rplI1 NONE
       argC1 1513151 .. 1513172 -  -5.9  -3.45776   TCAAAGGTAGCAGAA           GAAAGCACA GAGG TATGCTTCC            TTAGAGATAAAAGGT  61 470
 THEYE_A1578 1512274 .. 1512284 -  -5.4  -4.66264   TAAAATCCTTAAAAA                 TGCA GGA TGCA                 TACCTCCTGAGATGG  74 225
 THEYE_A1576 1511021 .. 1511047 -  -6.5  -2.87132   TTTTTTTGTTAGAGA         TTCCTCGGGAC ATTTA GTCCCTCGGAA         TGACAAAAAAGGATG  58 64
 THEYE_A1575 1509148 .. 1509161 -  -3.9  -5.37345   TTTAATCAGAAAAAA               TAAAG ACGA CTTTA                TTGAATATGTCAAAC  76 66
 THEYE_A1572 NONE
 THEYE_A1571 1505483 .. 1505507 - -11.6  -3.58329   TAAATATTTTTTAAA          TCTGGTATGA TTATC TCATACCAGA          AGGGAGGTGTTATGT  93 513
 THEYE_A1563 1495811 .. 1495827 - -10.8  -4.87389   GATGGTAAAAATAAA              GGGGGC ATAAA GCCCCC              TTTTAAAGGGCTAAA 100 441
 THEYE_A1554 NONE
 THEYE_A1553 1487765 .. 1487775 -  -2.6   -3.6682   CTGCATCTATTTAAA                 TTTT TCT AAAA                 CTTCTTCAAAAACAA  48 6
 THEYE_A1552 NONE
 THEYE_A1551 NONE
 THEYE_A1550 NONE
 THEYE_A1549 NONE
 THEYE_A1548 1480717 .. 1480727 -  -5.4  -5.08367   AAGAGAAATTAAAAA                 GTTC AGA GAAC                 TTAAACTCCCGCGAA  79 400
        truA 1478918 .. 1478930 -  -6.3  -3.88925   AAAAAAATTGAAGAA                GCTTT AAG AAAGC                TTGAGGAAGGCACAT  66 168
 THEYE_A1538 1473453 .. 1473471 -  -8.2  -3.07685   AAAATGGTTGAAAAG             TTAAGGCA GTT TGCCTCAA             TAGCAGAAAAGATTT  70 39
 THEYE_A1534 NONE
 THEYE_A1533 1468594 .. 1468617 -    -9  -3.49482   TTACAGGATGAAACA          TACAAGCTCA TAAA TGAACTTGTA           AAAAGTCATAATGTC  75 391
        atpB NONE
 THEYE_A1529 1466232 .. 1466251 - -13.6   -5.4505   GCTTTCAATAAAAAA            GGGGAGCA AATT TGCTCCCC             TCTGCAAAAAATAAG 100 46
 THEYE_A1521 1458263 .. 1458274 -  -2.2  -5.32608   AAAAAACTTAAAAAA                TCCG CTTT CGAA                 TCAGATTTAATTAGT  70 375
 THEYE_A1512 1448858 .. 1448883 -  -4.5  -2.75708   TTCTCCTAAAAAATT         TTTGGGGAGGG TAGA CCCTCCCCTTT          CTTATTAACGAAGAA  48 30
        flaG 1448432 .. 1448445 -  -5.3  -4.12532   GTCCTGACACATAAA               GATCA GCCA TGATC                AAACCTCCTCATAAT  64 24
 THEYE_A1510 NONE
        fliS 1446658 .. 1446668 -  -3.2  -3.02144   CGATTTTCTTTAAGA                 GCAA GTT CTGC                 TTGTATGAGCAGGCT  45 48
 THEYE_A1508 1445994 .. 1446026 -  -7.8  -2.80816   TGCGTAGGCAGTAGA      GGAATCTCCTCA GATTTAAAA TGAGGAGACCCC      TCCTAACGCTCGGGG  66 458
 THEYE_A1507 NONE
 THEYE_A1506 NONE
 THEYE_A1505 NONE
 THEYE_A1504 1442553 .. 1442563 -  -5.4  -3.56862   ATAAACCTGCTGAAA                 TTCC ATT GGAA                 CAGTTTAATACAGAA  59 518
 THEYE_A1501 NONE
 THEYE_A1500 NONE
        surE NONE
       gidA2 NONE
         pcm 1434861 .. 1434871 -    -4  -3.66256   GAGAGCTTGAAAATA                 TCTT AGA AAGA                 AGCATCATTATGTCT  52 230
        galT NONE
 THEYE_A1492 NONE
 THEYE_A1491 NONE
 THEYE_A1490 NONE
 THEYE_A1489 NONE
 THEYE_A1488 1422967 .. 1422978 -  -5.8  -3.67597   TCTCTTATGGAATAA                GTCC ATTC GGAC                 TTTCTGAGTCAATTA  62 499
 THEYE_A1486 NONE
 THEYE_A1485 NONE
        ftsE NONE
 THEYE_A1483 NONE
 THEYE_A1482 NONE
 THEYE_A1481 1415037 .. 1415050 -  -8.1  -2.83668   CTCAAAAATAAAATT               CTCCC TTAC GGGAG                TTAAACTATTTTAAC  68 67
 THEYE_A1480 NONE
        rpmF NONE
        plsX NONE
 THEYE_A1477 1412336 .. 1412346 -  -3.2  -5.05301   AAATAAGCAGAAAAA                 GTAG CTA CCAC                 TTTATCAAAGATGCA  67 19
 THEYE_A1473 NONE
 THEYE_A1472 NONE
 THEYE_A1471 NONE
 THEYE_A1470 1403319 .. 1403335 -  -6.5  -2.62396   CAGTTGGTCAGAGCA              GACGGCT CAT ATCCGTC              GTGTCAGGGGTTCAA  57 60
 THEYE_A1468 NONE
 THEYE_A1467 NONE
 THEYE_A1466 NONE
 THEYE_A1465 1400170 .. 1400180 -  -2.6  -3.65224   ATGTGATTCCAACAA                 TTTT CAT AAAA                 GAACTCTTCCGTTTC  48 18
 THEYE_A1464 NONE
 THEYE_A1463 NONE
 THEYE_A1462 1397264 .. 1397292 - -13.2   -3.0247   AAGGTGGAGATAAAG        GAGGCCACCTTC TTTAT GAAGGCGACCTC        ACTGAATTTTTAAAA  88 80
 THEYE_A1460 1393612 .. 1393630 - -14.6  -4.78597   GGAATAATAAAGAAA             GGGGGAGA AAT TCTCCCCC             TTTTCAATTAGCAGG 100 405
 THEYE_A1458 NONE
        ispE NONE
 THEYE_A1456 1390927 .. 1390941 -  -7.1  -3.43674   TTAAAAATAAAATTA               CCCTC TTTCT GAGGG               TTTATCTACTGGGGA  68 30
 THEYE_A1455 NONE
 THEYE_A1454 NONE
         pth NONE
 THEYE_A1452 1387854 .. 1387864 -    -4  -2.67512   ATATACTTAAATTTA                 CTTT AAC AAAG                 TTTTAACATTTGCAG  46 207
        rpsL NONE
        rpsG NONE
       fusA2 NONE
        tuf2 NONE
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN NONE
        rplX NONE
 THEYE_A1434 NONE
        rpsN NONE
        rpsH NONE
 THEYE_A1431 NONE
        rplR NONE
        rpsE 1375384 .. 1375397 -  -2.5  -2.90496   GCTGGTTTTAAATCA               TTTAT TTTC ATAAA                ACCTTTTCCTCCTCA  42 19
        rplO NONE
 THEYE_A1427 NONE
         map NONE
        infA NONE
        rpsM NONE
        rpsK 1371728 .. 1371745 -  -4.1  -2.78679   TCTTGCCATTTAAAC             CCTCC TTCTCTTC GGAGG              TCTGCACCCATTGTG  46 2
        rpsD 1371095 .. 1371107 -  -3.5  -3.90318   TTATCACTTTATAAA                TTATT TTG AATAA                AACTCTACAATCAAC  54 13
        rpoA NONE
        rplQ NONE
 THEYE_A1419 1369515 .. 1369525 -  -6.8  -4.08285   CATAAAAAATTTAAA                 CTCC TGG GGAG                 GGATTCGAACCCCCG  71 11
        rplT NONE
        pheS 1368060 .. 1368076 -  -3.7  -3.34013   TATTCCGTTAACCAA              CTGAAAG GAA CTTTCAT              CAGAATTGCCTCAAA  48 25
        pheT 1365990 .. 1366001 -    -3  -3.91032   GAAGCAGGTTATAAA                CTAA AAAA TTAG                 ATTCTGAGGGCAGCT  52 22
 THEYE_A1414 NONE
 THEYE_A1413 1363978 .. 1363993 -  -4.8  -3.36273   TTTTTGCAATACGAA              TTTTGT TTTT ACAAAA               TTTCATACAAAACTT  55 68
 THEYE_A1411 1362689 .. 1362705 -  -2.3   -4.4648   ATTGCTATTATAAAA              TATATTC GTT GACTATA              CAGTCCTGAAATCTC  57 39
 THEYE_A1409 1362303 .. 1362314 -    -3  -2.55909   AAAATCTTATAATAC                TAAG CTTA CTTA                 CAATATTAGAAATTG  42 219
 THEYE_A1403 NONE
 THEYE_A1402 1354548 .. 1354561 -  -3.9  -2.69468   CAGTCTTATATATTA               TTGAA AAAG TTCAA                ATTTATAGCCTGCAC  46 9
 THEYE_A1394 NONE
 THEYE_A1393 1346434 .. 1346452 -  -2.4   -2.7094   TCTCATTCATATAAG             CCTCCTTC TTT AAAAAAGG             ATAACATTTTAAATC  40 41
 THEYE_A1392 NONE
 THEYE_A1391 NONE
        hypA NONE
        hypB NONE
 THEYE_A1388 1343914 .. 1343927 -  -4.5  -3.78693   AAAGTTATAAAAAAT               GCGAA AACA CTCGC                TGAAGCATTAAAAAA  57 377
 THEYE_A1379 NONE
 THEYE_A1378 NONE
 THEYE_A1377 NONE
        engA NONE
 THEYE_A1375 NONE
 THEYE_A1374 1331236 .. 1331259 -  -6.8   -2.9976   AAAAATAAAAAGGGA          GTCAGAAGAA AAAA TTCTTCTTAC           AATTTCTGATACAGG  59 220
 THEYE_A1371 NONE
 THEYE_A1369 NONE
 THEYE_A1368 NONE
        vhuD NONE
 THEYE_A1366 NONE
 THEYE_A1365 1323599 .. 1323621 - -13.4  -3.49878   TAATTAAATTTAGAA           GGCGGGGCAA TAA TCACCCCGCC           TTATGGAAATGCTTT 100 40
 THEYE_A1363 1322734 .. 1322761 -  -4.9  -3.31322   GTTAATCTCTTATAA        CACTGGTGCCAA TGAAC TTGCCACC-GTG        CTCGGTCCTTTGATG  54 392
 THEYE_A1359 NONE
 THEYE_A1358 NONE
 THEYE_A1357 NONE
 THEYE_A1356 1320688 .. 1320699 -  -3.6  -2.78679   TTCTTTCATCTAAAG                CCCA TGAC CGGG                 ATCGAACCGGTGGCC  44 9
        tuf1 NONE
 THEYE_A1354 NONE
        secE NONE
        nusG 1318466 .. 1318486 -  -4.8  -3.53224   TATTCCTCCTTTAAA            CCTTTTCA ACCTG TGAAAAAG            CCAGTTCTACAGGCG  56 0
        rplK NONE
        rplA 1317311 .. 1317323 -  -9.1  -3.76482   TCAGATTATTAATAA                CAGGC AAA GCCTG                TTTTAAAATTTCAGC  81 28
 THEYE_A1349 NONE
        rplL NONE
        rpoB 1312293 .. 1312306 -  -3.9  -3.20899   AAAATATTAAAATCA               TTGAA ACCG TTCAA                CTTTTTTCTTTTTCT  49 9
        rpoC NONE
 THEYE_A1345 1307411 .. 1307421 -  -5.4  -3.13403   TGTTGTGTATGAACA                 GCTT TCA AAGC                 CTATTTCAGAGTATA  54 274
 THEYE_A1343 NONE
 THEYE_A1342 NONE
 THEYE_A1341 NONE
 THEYE_A1340 NONE
 THEYE_A1339 NONE
 THEYE_A1338 NONE
 THEYE_A1337 1297893 .. 1297910 -  -4.2  -3.90762   CATTTTTGAAAAATA             TGTTAC CCAATC GTAACA              ACTAAAAATTCATAT  56 65
 THEYE_A1336 1296806 .. 1296825 - -13.6  -4.78839   AATCTGAGAATAAAA            GAGGGGGA ATAG TCCCCCTC             TGAATTAAAATGGTG 100 30
        mraZ NONE
        mraW NONE
 THEYE_A1330 NONE
 THEYE_A1329 NONE
 THEYE_A1328 1287993 .. 1288009 -    -3  -2.90405   AAACATAATGAATTA              CCTCAA CTCTC TTAAGG              CTTTTACAAGAATTT  43 6
        murF NONE
        mraY NONE
 THEYE_A1325 NONE
        murD NONE
        ftsW NONE
        murG NONE
        murC NONE
        murB NONE
 THEYE_A1319 NONE
 THEYE_A1318 NONE
        ftsA NONE
        ftsZ NONE
 THEYE_A1315 1272122 .. 1272136 -  -2.1  -5.33921   AAAGCAATTAAAAAA               TCCAT TGATT ACGGA               TTTCAAGTAAGTATC  70 498
 THEYE_A1313 NONE
 THEYE_A1311 NONE
 THEYE_A1310 1266766 .. 1266781 -    -9  -3.09579   AGGTAAAAAAGATTA              CTCTGC ACGG GCAGAG               GAGATATCACAACAG  74 344
 THEYE_A1306 1264170 .. 1264185 -  -2.4  -3.53257   AATTTAAAAATAAAT              GCCCCC TGCA GGGATC               GAACCTGCGACACCA  46 6
 THEYE_A1305 NONE
 THEYE_A1303 NONE
 THEYE_A1302 NONE
 THEYE_A1301 1259551 .. 1259565 -  -3.6  -2.50935   ATCGCATGTAGGAAT               TTATCT TGG AGACAA               TCTATTTATTCATGC  45 182
        ribD 1257015 .. 1257029 -  -2.2  -4.14511   AACTTTAGCTCAAAA               TTAAAA TTT TTTCAA               CCCTTTTAAATATCC  52 11
 THEYE_A1297 1256604 .. 1256636 - -14.3  -4.92756   AGCATCAAAAATAAA      GAGCCACAAATCC TGCCTTC GGATTCGTGGCTC      TAAAAAAATCTAAAC 100 40
 THEYE_A1293 1254922 .. 1254933 -    -3  -5.06414   CTCTGGGAAGAAAAA                GTTA CTTG TAAC                 GCTCCACTTTGAATC  67 15
 THEYE_A1286 NONE
 THEYE_A1285 NONE
 THEYE_A1284 NONE
 THEYE_A1283 NONE
 THEYE_A1282 NONE
 THEYE_A1281 NONE
 THEYE_A1280 1240638 .. 1240650 -  -4.1   -4.9792   TATTGGATATAAAAA                GACTT CTT AAGCC                TCCAATGTTTGTTCC  73 451
 THEYE_A1272 NONE
 THEYE_A1271 1232135 .. 1232146 -    -3  -3.81271   TAATATAAAAGAATA                TTTG CTCA CAAA                 AGCTTCAACAACAAA  52 61
 THEYE_A1269 NONE
 THEYE_A1268 NONE
 THEYE_A1267 NONE
 THEYE_A1266 1229766 .. 1229778 -  -6.3  -3.15658   CATTAGAAAATTATA                GGATA GGC TATCC                TCAAGACAGCTATGA  61 154
 THEYE_A1261 NONE
 THEYE_A1260 NONE
 THEYE_A1259 NONE
 THEYE_A1258 1222965 .. 1222977 -  -2.7  -3.52192   CTGAAGCTTATATAA                GATAA TTT CTATC                CAAAATACCAATTCA  46 21
        rpsT 1219929 .. 1219952 - -11.1  -5.93252   CTTAAAAATAAAAAA          GAGTTCAGG TATTGT CCTGAACTC           TTTTTAGCTAAAAAG 100 60
 THEYE_A1254 NONE
 THEYE_A1253 NONE
        moaC 1216661 .. 1216672 -  -4.4  -3.88291   TATTATGCCGATAAA                TCTG CAAG CAGA                 GGTATCTCTTAAGCA  57 464
 THEYE_A1250 NONE
 THEYE_A1249 1214966 .. 1214977 -    -3   -3.6692   TCGTATCGGAAAATA                GTAT CCAC ATAC                 TTCCAATAAACAGAT  50 151
 THEYE_A1248 NONE
 THEYE_A1247 NONE
 THEYE_A1236 NONE
 THEYE_A1235 NONE
 THEYE_A1234 1201513 .. 1201526 -  -3.8  -5.15634   TATTTCATTAAAAAA               TCGG GGCGAG CCGA                TTTGAACGGCCGACC  74 8
        lysS NONE
 THEYE_A1232 NONE
 THEYE_A1231 NONE
 THEYE_A1230 NONE
        thrS NONE
 THEYE_A1228 NONE
        rpmI 1195138 .. 1195152 -  -2.9  -4.07885   TACCTCCTGTTAAAA               CTTAT ATGGA ATAAG               CATTCTTATTGCCTT  55 5
        rpmH NONE
 THEYE_A1225 NONE
 THEYE_A1224 NONE
        trmE 1191834 .. 1191855 -  -3.1  -2.99717   ATCTATACAACCACA           GCAAAATAA ATAA TTATTTTCC            AATGCAAAACTCACT  45 17
 THEYE_A1219 NONE
 THEYE_A1218 NONE
 THEYE_A1217 1188434 .. 1188453 - -12.1  -4.05446   TTTGCCAACCATAAA            GGCGGGG AATTCA CCCCGCC             TTTTTTATTTGCTCT 100 282
 THEYE_A1214 NONE
 THEYE_A1213 1183545 .. 1183574 -  -4.9  -5.51612   ATAGAAAAAAGAAAA       GATTCCTCGGCAC GGAT GTGCCTCGGAATG        ACCAAAAAACATAAT  82 237
        purF NONE
 THEYE_A1195 NONE
 THEYE_A1194 NONE
        smpB NONE
        ssrA 1165329 .. 1165340 -    -3  -2.66637   AAGAGATTAATCAAT                TCTT GTTC AAGA                 CGCCTCTTGATCTTG  43 512
 THEYE_A1182 NONE
 THEYE_A1181 1154810 .. 1154832 -    -9  -2.91869   CAATAAAGGAGGAGA           CCCTTCGGGC AAA GCCCTCAGGG           TGACAGAAAAAGATG  73 197
 THEYE_A1179 NONE
        cobS NONE
        cobQ NONE
        cobD NONE
 THEYE_A1175 NONE
 THEYE_A1174 NONE
 THEYE_A1173 NONE
        cbiX 1147342 .. 1147359 -  -8.4  -5.20331   AAAGAATAAAGAAAA             GAGGGG CACTGT CCCCTC              TTTTGTCTCTCACGC  93 306
 THEYE_A1167 1144830 .. 1144846 - -12.3  -4.11805   ATTATAGCAGAGAAA              GGGAGCA GGT TGCTCCC              TCCTCTTGTAATTTT 100 40
 THEYE_A1165 NONE
 THEYE_A1164 1142141 .. 1142152 -    -3  -3.14132   TTGCTGCTGGAGCAA                TGAT TTTT ATCA                 CAGCAGAGGAGTTGA  45 139
 THEYE_A1162 NONE
 THEYE_A1161 1138733 .. 1138748 -  -6.2  -3.10894   ACCACCATTATTGAA              GCTATT TCCT AATAGC               CCTAAGGGGTATAAA  59 483
 THEYE_A1157 NONE
 THEYE_A1156 NONE
 THEYE_A1155 1133227 .. 1133259 - -18.1  -4.59109   GAGACTGTTCAAAAA      CTTGTAGTTTATTGA AAA TCAATAAACTACAAG      CCCTGCTATTTTTCT 100 208
 THEYE_A1154 1132860 .. 1132880 -  -9.7  -3.79203   ATAGAAAATTTTAAA            GGGAGGG TGAAATT CCCTCCC            TTTTTATTCATTAAC  83 36
        ilvE 1131662 .. 1131677 -  -6.2  -3.91072   TTAAAGTGTGATAAA              TGTCAT AAGG ATGACA               AATCTATTGAAAATA  67 179
        ppdK NONE
 THEYE_A1137 NONE
 THEYE_A1135 1109398 .. 1109414 -  -6.5  -2.84325   GTCTGGGAAAGAGGA              GCAGGAG AAA CTCTTGC              CTGCGGGACAGGAGC  58 167
 THEYE_A1132 1105333 .. 1105356 - -16.8  -4.07786   GACAAAAGTGACAAA          CTGCTGTCCC ATTT GGGACAGCAG           TTCTAAGTCACTGGA 100 33
 THEYE_A1131 NONE
 THEYE_A1130 NONE
 THEYE_A1129 NONE
 THEYE_A1128 NONE
 THEYE_A1127 NONE
 THEYE_A1126 NONE
       nuoD2 NONE
 THEYE_A1124 NONE
 THEYE_A1123 NONE
 THEYE_A1122 NONE
 THEYE_A1121 NONE
 THEYE_A1120 NONE
 THEYE_A1119 NONE
 THEYE_A1118 NONE
 THEYE_A1117 NONE
 THEYE_A1116 NONE
 THEYE_A1115 NONE
 THEYE_A1114 NONE
 THEYE_A1113 1087567 .. 1087607 - -20.1   -5.3798   GAAGAAGAATAAAAA  TTAATAAGGGCTTGGAAAT CCT ATATCCAAGCCCTTATTAA  AGGAGGGTGGGGTGT 100 57
 THEYE_A1102 1074000 .. 1074010 -  -2.6  -4.10007   AGAATCTCTTCAAAA                 TTTT AAT AAAA                 ACTCAACTCCATTTC  53 9
 THEYE_A1086 NONE
 THEYE_A1085 NONE
 THEYE_A1084 1056462 .. 1056490 - -15.4  -5.66684   TAATTCATAAAAAAA       GCCGTGGTAAGGC TTCC GCCTT-CCACGGC        CTTCATGACCAGTTT 100 91
 THEYE_A1083 1054044 .. 1054059 -  -2.6  -2.88023   CCACCATCACCAAAC              TCAGTA AAAT TACTAA               AACTTTAATGTAAGC  42 22
 THEYE_A1082 NONE
 THEYE_A1081 1052060 .. 1052080 -    -9  -3.73775   GTCATTCCGAGCAAA            GCGAGGAA TCTCC TCCCTCGC            TCCGAGTGATAGAAG  80 48
 THEYE_A1080 1051250 .. 1051264 -   -10  -3.00704   ACCTCCTAAATCACA               GGGCAT ATT ATGCCC               TGTCCATTAATGTTG  81 1
 THEYE_A1077 NONE
 THEYE_A1075 NONE
 THEYE_A1074 NONE
 THEYE_A1073 1043130 .. 1043140 -    -4  -2.67381   ACAATAGGAACCAAG                 CTTA ATG TAAG                 AGTTTCAAAGGTTAG  45 37
 THEYE_A1059 1028730 .. 1028744 -  -5.8    -3.314   AAGAATTAATTAATA               CTTTTT ATA AAAAAG               AGGGTCTTCGCAGGT  59 5
 THEYE_A1058 NONE
 THEYE_A1057 NONE
 THEYE_A1056 1025526 .. 1025547 - -11.6  -5.24531   ATTCTCCATAAAAAA           GCCGGGAA TTTCAT TTCCCGGC            TTTTTTAAGCATATT 100 50
 THEYE_A1055 NONE
 THEYE_A1054 1024995 .. 1025013 -  -5.9  -3.04248   TAATATTTTTTAAGA             GAGCTCG TTTAT CGGGCTC             TCTTATTTTTCATGA  57 82
 THEYE_A1052 NONE
 THEYE_A1051 1022258 .. 1022288 -  -5.6  -3.14564   TTATGTGGGTAGCAA       GAAACAATTAATTG ATG CATTTAATTTTTTC       CAGAAAAAAGATTAA  54 56
        miaB NONE
 THEYE_A1048 1017664 .. 1017676 -  -3.5  -4.32607   TCAAAAGTTAATAAA                TTTTT TGG AAAAA                TCTTAAATTGAGTAT  58 68
        proS NONE
 THEYE_A1046 1014829 .. 1014848 -  -2.2  -4.08767   TTCAGGTCTTGAAAA            GATTTTTT TCAT AACAAATC             ATTATAGCAGAAATT  52 14
 THEYE_A1045 NONE
 THEYE_A1044 NONE
 THEYE_A1043 NONE
 THEYE_A1039 NONE
       uvrA1 NONE
 THEYE_A1037 NONE
 THEYE_A1036 1001246 .. 1001269 -  -4.1  -2.76059   TAATAGAGAAATTCA          TTTATTTTT GGTTGA AAAAATAAA           AAAAGTTTTAGATTT  46 40
 THEYE_A1025  991842 ..  991852 -  -5.4  -5.03314   TTTAGGCTTAAAAAA                 GCTT TAC AAGC                 TGGTGCTGATTATGT  79 461
 THEYE_A1022  988262 ..  988276 -  -2.8  -3.59966   AGATTTGATATAGAA               GTTGAT TTA AGCAAC               AAATCAAAGGATGAG  48 493
 THEYE_A1020 NONE
        hypD  983458 ..  983468 -    -4  -2.52543   AGGGCTTGTAATTTA                 TTGA ATT TCAA                 TAGGTTACAAGTTTT  45 493
        folK  982227 ..  982237 -  -2.6  -5.40072   TCCCTCCTAAAAAAA                 TTTT TTT AAAA                 TTGTAAAATTTTGAC  72 95
 THEYE_A1014  981281 ..  981300 - -10.7  -4.05446   CTTTTCAATCATAAA            GAGGGGG ACAATG CCCCCTC             TTTTATTTTAACCTT  91 33
 THEYE_A1013 NONE
 THEYE_A1012 NONE
 THEYE_A1011 NONE
 THEYE_A1010  977067 ..  977082 -  -2.6  -3.43445   TATCATCAATAAAAT              TTC-CCA AAT TGGTGAA              GTTATATCAGTAAAA  46 32
        murA NONE
        gcvH NONE
        lpdA NONE
 THEYE_A1005 NONE
         eno NONE
 THEYE_A1003 NONE
 THEYE_A1002  966753 ..  966773 -  -8.3  -2.57013   TGGGAATTGAACCCA            CTGCACGAA ATC TTCGTGCAT            CACTGGTTTTGCAGA  67 120
 THEYE_A1001 NONE
 THEYE_A1000 NONE
 THEYE_A0999  966325 ..  966344 - -11.4  -5.79595   CTGTAAAATAAAAAA            GCCGTGGC ATAA ACCACGGC             TTTTTTATACGTCCC 100 31
 THEYE_A0998  964115 ..  964130 -    -4  -4.59846   ATCATAGAAAAAGAA              CCTGAT AATT ATCAAG               CATATAAAGAAAGAG  65 507
 THEYE_A0995 NONE
 THEYE_A0994 NONE
 THEYE_A0993 NONE
 THEYE_A0992 NONE
 THEYE_A0991  956480 ..  956491 -  -2.2  -2.85668   TATTTCCATATTACA                CTCC TAAT AGAG                 CTAAAAGTATAGATG  41 9
 THEYE_A0990 NONE
 THEYE_A0989 NONE
 THEYE_A0988 NONE
 THEYE_A0987  953107 ..  953139 - -14.5  -4.59109   GAGACTGTTCAAAAA      CTTGTAATTTATTGA AAA TCAACAAATTACAAG      TTCTAAAATTTTTCA 100 326
 THEYE_A0986 NONE
 THEYE_A0985 NONE
 THEYE_A0984 NONE
 THEYE_A0983  949257 ..  949270 -  -3.1  -4.18697   AAAAGGAGTTGAAAA               TGAAG ACTT CTCCA                GCATTTATAAAATTT  57 67
 THEYE_A0981 NONE
        hemH NONE
 THEYE_A0979 NONE
 THEYE_A0978 NONE
 THEYE_A0977 NONE
 THEYE_A0976 NONE
 THEYE_A0975  943064 ..  943084 -  -4.1  -4.76423   GATAAAGATATAAAA            TTGCTTATT GAA AATAAGAAA            AGAATTCTTCCAAAG  70 522
       hisC1 NONE
        hisB NONE
        thyX NONE
 THEYE_A0968  936983 ..  936993 -  -2.6  -5.31519   AGAGGTAAAGAAAAA                 TATA CTA TATA                 AATTTTTAACTGAAA  72 188
 THEYE_A0959 NONE
 THEYE_A0958 NONE
 THEYE_A0957 NONE
 THEYE_A0956 NONE
 THEYE_A0955  926407 ..  926418 -  -4.4  -3.57144   CCTTTCAGGCTCAAA                CAGT TGTG ACTG                 TTTTACACTCCTCTC  56 104
THEYE_A0954a  923981 ..  923991 -    -4  -3.35224   AGAGGCTGCTAAACA                 CAAT GGA ATTG                 TTTACATTAGAACTA  51 433
 THEYE_A0949  915759 ..  915780 -  -2.4  -4.44525   AAAAAAATAGAGAAA           TGGG-AATT CTATT AATTACCCA           CGACTTAAATATTGT  57 379
 THEYE_A0946 NONE
        rfaF NONE
 THEYE_A0944 NONE
        trpF NONE
 THEYE_A0942  909510 ..  909527 -  -4.3  -3.75292   AGCCAGGACCAAGAA             TTTTTAT ATCC ATAAAAA              CCTCCCATAAAAATT  56 56
 THEYE_A0941  909204 ..  909214 -    -4  -4.70169   GTATATGTAAGAAAA                 TCAA ACA TTGA                 CCCATTTTATCTGAT  65 85
 THEYE_A0940  908268 ..  908293 -  -7.6  -4.46587   GCAGGAATAAAAGAA         GTTCATGCCA TAACAC TGGCAAGAAC          AATTTAATAAAAGAA  82 29
 THEYE_A0935  902731 ..  902746 -    -4  -4.49041   AGAGAAAAAATTAAA              GAACTT GCAA AAGCTC               AACCATTTACAAAGT  65 405
        dapA NONE
        recN NONE
 THEYE_A0931  898479 ..  898496 -  -2.7  -2.82491   TATAGATTTATGATA             TTTTTGC TGTG GCAAAGA              TACTACATTTATAGA  42 57
        lpxC  897543 ..  897554 -  -5.8  -3.06509   CTTTAAAGAATTATA                CAGC TTGT GCTG                 AAAGTTGAAAATTAA  57 9
 THEYE_A0926 NONE
 THEYE_A0925  892943 ..  892955 -  -6.3  -2.89743   AACTCATATACCACA                TGCAA AGT TTGCA                ATTGCCTTTACAGAG  58 373
 THEYE_A0898  868685 ..  868697 -  -3.3  -3.39407   AAGACAAGGCTATAA                GAGCA GTC TGCGC                AGGAATGAAATATGA  48 208
 THEYE_A0896 NONE
 THEYE_A0895  865252 ..  865264 -  -4.9   -4.3534   GTTGAAGGATTAAAA                GAAAA GAT TTTTC                TTGGTTTGAGGATGA  67 161
 THEYE_A0894  863298 ..  863318 - -11.1  -3.34192   AAGTTTTTTAATTAA            GGGGAGGAT TCG AACCTCCCC            TGATTTTTTTATAGT  85 34
 THEYE_A0890  859093 ..  859103 -  -3.2  -3.86346   TGAGGTTTCCAGAAA                 GGCT TCC AACC                 TTAAAAGAGATGGAA  52 234
        ruvA NONE
        ruvB NONE
 THEYE_A0875 NONE
 THEYE_A0874 NONE
 THEYE_A0873 NONE
 THEYE_A0872 NONE
 THEYE_A0871  841921 ..  841944 -    -4  -2.68034   TATTAACTGAAAGAT          TTTATCCA ATCCCCCA TGGATAAA           TGGATATTCTCTTTC  46 70
 THEYE_A0870 NONE
 THEYE_A0869 NONE
 THEYE_A0868  839013 ..  839031 -  -7.4  -3.17941   AGTATATCTCAGCAA             TCCAGCAG TTG CTGCTGCA             AGCGGAGTGCTTGGG  67 62
 THEYE_A0866 NONE
 THEYE_A0863 NONE
        ilvD NONE
 THEYE_A0861 NONE
        galU NONE
         lon NONE
        thiL  828239 ..  828254 -  -4.8  -3.09018   TGATTACTGTAAAAT              TTTTCA TTAT TGAAAA               TGCTGCCAACCTTCT  52 16
 THEYE_A0857 NONE
 THEYE_A0856  826130 ..  826141 -    -3  -2.52156   CTATAATCAATATAG                GTTT GCAT AAAC                 TAAAAGTTGAAAGGT  42 25
 THEYE_A0855 NONE
 THEYE_A0854 NONE
 THEYE_A0853  824116 ..  824129 -  -3.9  -4.13748   TCTAAAAAGAGCAAA               TTTTC TTGA GAAAA                AATTCGGTGCTATAT  59 194
 THEYE_A0847  820709 ..  820725 -  -9.5  -2.62983   CTCAGCGGTAGAGCA              GTCGATT CGT AATCGAC              CGGTCGTGGGTTCAA  72 57
 THEYE_A0838 NONE
 THEYE_A0837 NONE
 THEYE_A0836  813405 ..  813419 -  -5.8  -2.50016   GTTGATTAGTAATAT               TAAGAA TTT TTCTTA               TCTCCGAAGCTTTAT  54 105
 THEYE_A0835 NONE
 THEYE_A0834 NONE
 THEYE_A0833 NONE
 THEYE_A0832  809104 ..  809124 -  -2.7  -4.96468   GAAATTTAAACAAAA            TTTTCATAA CAT TTATTAAAA            CCTTAAATATTCAGT  66 169
 THEYE_A0831 NONE
 THEYE_A0830 NONE
 THEYE_A0829 NONE
 THEYE_A0828 NONE
        lpxB NONE
 THEYE_A0826  803239 ..  803249 -    -4  -3.16556   AAAGAGCAGATGGAA                 GAAT GAA ATTC                 AACCCTACATCTCAG  49 114
 THEYE_A0824  801240 ..  801253 -  -8.1  -3.13164   CTTTGAATTAGTGAA               CTCCC TTGA GGGAG                AGGCTTTAGTTATAG  68 384
 THEYE_A0816 NONE
 THEYE_A0815 NONE
 THEYE_A0814 NONE
 THEYE_A0813 NONE
 THEYE_A0812  791964 ..  791978 -    -5  -4.25074   GAGGAAACTTTAAAA               TTGCAC CTG ATGCAA               ATTTAACAGATCCTT  64 248
 THEYE_A0807 NONE
        hemE NONE
        purN NONE
 THEYE_A0804 NONE
        coaD NONE
        dksA  783575 ..  783588 -  -3.8   -3.6217   ATTCACCATAGAGAA               CCTG GGATAG CAGG                ATTTGGACTTATTAA  52 295
 THEYE_A0800 NONE
 THEYE_A0799  781055 ..  781085 -  -2.6  -4.89477   GTTGTAAGAAGAAAA       CTTCAATCATTTTC TAA GAAAGTTGTTGAAG       GAAGTCCTGAGTGGA  66 407
 THEYE_A0789  776413 ..  776448 - -17.8    -3.322   AGCTTTATAGATTAA    TTTTTGAGGGCAGAGG TCGT CCTCCACCCTCAAAAA     CTTACTCCAATCTGA 100 27
 THEYE_A0784  771809 ..  771831 -  -4.3  -3.68351   TTTGTATGATGCAAA           CATAAATAT TGAGT ATATTTACG           CATTTGTTGAAAAGT  55 142
 THEYE_A0778  767534 ..  767546 -  -4.1  -3.05624   TAATGAAAAATATTA                GGACT TAT AATCC                ATTAATTGTGCAATA  48 122
 THEYE_A0777 NONE
 THEYE_A0776 NONE
 THEYE_A0775  763284 ..  763302 -    -9  -3.06515   TTGTATTTGTAAAAT             TTTTCAGA AGA TCTGAAAA             TGGCAGAAAAATCAC  71 525
 THEYE_A0769  757947 ..  757957 -  -2.6  -3.51032   AGTTTCTAATGATAA                 TATT AAA AATA                 TTTAAAAAAGTCAAT  46 43
 THEYE_A0768  756683 ..  756702 - -13.6  -5.85244   AATTAAAATAAAAAA            GCCCAAGC AAAA GCTTGGGC             TAAAAAATTTATCTC 100 34
 THEYE_A0767 NONE
 THEYE_A0766 NONE
 THEYE_A0765 NONE
 THEYE_A0764  753283 ..  753303 -  -6.9  -2.90212   TTATGACCTGAGAGA            GTTTTATCC ACA GGCTAAAAC            TTATTTAATAGATGG  62 80
 THEYE_A0758  747666 ..  747688 -  -7.7  -2.62545   GAGAGCTTAAAAAGG           GAAGGGGGA TTAAC TCCCTCTTC           TGATTAAATTTTAAA  65 36
 THEYE_A0756  746827 ..  746844 - -14.1  -4.41348   TCCGTTTTAAACAAA             GGGGCGG AAAC CCGCCCC              TTTTATTACTATCTT 100 34
 THEYE_A0755 NONE
 THEYE_A0754 NONE
 THEYE_A0753 NONE
 THEYE_A0752 NONE
 THEYE_A0751 NONE
 THEYE_A0750  742207 ..  742220 -  -2.5  -5.16472   AAAAACCTGAAAAAA               TTTAA TTTT TTAAA                TCAGAATAAGCGCCT  69 13
 THEYE_A0744 NONE
 THEYE_A0743 NONE
 THEYE_A0742 NONE
 THEYE_A0741 NONE
 THEYE_A0740  731008 ..  731040 - -11.5  -2.78868   TAAGAGATCTAAGGA      CTTGTGGTTCATTGA TTT TCAATAAACTACAAG      TTTTTGAACAGTCTC  86 524
 THEYE_A0738 NONE
 THEYE_A0737  728975 ..  728987 -  -4.1   -5.1615   TCAAGATTTAAAAAA                GTTGC TGA ACAAC                TAATTTTCCCTGAAT  74 343
 THEYE_A0726  717060 ..  717077 -  -7.1  -2.59876   TTACTATAGAAAAGG             CTCTTAA ATGG TTAAGAG              TTCAGCGGGAAAACA  61 147
 THEYE_A0721 NONE
 THEYE_A0720  712136 ..  712147 -  -4.4  -4.05067   GAGTTTATAAAAATA                TTCC GATG GGAA                 AAAGCAATACCTCAG  59 237
        mutS NONE
        coaE NONE
        ribF  694326 ..  694349 -  -5.4  -3.54951   TACCTGATTACAGAA          CTTTTGAAAA GGCT TTTGCAAAAG           TTTTATCAATCTGTC  59 439
 THEYE_A0702 NONE
 THEYE_A0701  691867 ..  691899 - -11.5   -4.7078   GGAATTATTTAAAAA      CTTATAATCTCCTGA AAA TCAAGAGATGATAAG      TTTATTTAATTTTAT 100 83
 THEYE_A0700 NONE
 THEYE_A0699  691055 ..  691082 - -12.8  -3.85389   TTTGAATAATTTAAA        GCAACACCAGGA ATAA TCCCAGTGTTGC         TTTGTTTGTATCCTG 100 46
 THEYE_A0698 NONE
        nusA NONE
        recG  687220 ..  687234 -  -5.7  -3.00498   CAGATGCTATACAGA               GAGCT GACTT AGCTC               TTCTTAAAGCAAAAA  54 93
 THEYE_A0694 NONE
         nth  684650 ..  684663 -  -4.5  -3.50535   AATTTGCAGAAAAAG               CAGGG TTAA CCCTA                ATTGGCTTTCTGAGA  53 85
 THEYE_A0691 NONE
        hemB NONE
 THEYE_A0689 NONE
 THEYE_A0688 NONE
        uvrB  679903 ..  679920 -  -4.2  -2.78032   GTTTTTTGAAAATAT             CAGAAA GAAAAT TTTCTG              TCAAGCTTTTAAACT  46 34
 THEYE_A0686  679069 ..  679081 -  -3.5  -5.15969   TTCCAATTTAAAAAA                TTTTT AAT AAAAA                TCAGATGATAATTAT  72 61
 THEYE_A0685  678293 ..  678303 -  -5.4  -2.92924   CTCAAAGCATTAAAG                 TGCT ATT AGCA                 ATGATTGGAATTGGT  52 485
 THEYE_A0680  675405 ..  675416 -    -3  -4.43669   ACTGAAAAAATTAAA                TCTT GTTA AAGA                 TGGTGATGCAGTTGT  60 108
 THEYE_A0671 NONE
        argF  664986 ..  665015 -  -9.5  -2.92667   GGAAGTTGTAAATCA       GAATATTCTTACA TTAT TGTAGGAATATTC        CTACAAATTCAGCAA  75 26
 THEYE_A0669 NONE
 THEYE_A0668  661769 ..  661780 -  -4.4  -3.17075   CTGTTGCCAACTTAA                TCCT CCAT AGGA                 ACAAGTTTGCCAGGG  50 10
 THEYE_A0667 NONE
 THEYE_A0666 NONE
 THEYE_A0665 NONE
 THEYE_A0664 NONE
 THEYE_A0663  655793 ..  655805 -  -4.9  -2.93703   AGAAGGATGTACATA                TAATG TTC CATTA                AGGTCAGGTTCAGGC  51 307
        ilvC NONE
 THEYE_A0652 NONE
 THEYE_A0651 NONE
        leuA  643899 ..  643910 -    -3   -5.0538   GGTTATTTTAAAAAA                TCTT CTTT AAGA                 ATGATTCAGGTTTTA  71 491
 THEYE_A0647  642967 ..  642982 -  -3.2  -3.89301   AATGTAGATAAAATA              TTGCCC TAAA GGGAAA               GGAGCATTTTTAATA  52 55
         rho NONE
 THEYE_A0630 NONE
        purL NONE
        argS  615559 ..  615590 -  -3.9  -4.40184   GCAAGTAAATACAAA      GTTCCTGTTAT-TG TCATG CATATAAAAGGAAC      ACCCAAAGATATGCA  62 427
 THEYE_A0625 NONE
        aroC NONE
 THEYE_A0623 NONE
 THEYE_A0622 NONE
 THEYE_A0621 NONE
 THEYE_A0616 NONE
 THEYE_A0615 NONE
 THEYE_A0614  602829 ..  602840 -    -3  -2.97885   ATAACCAAAAAAACT                TTCA AAAC TGAA                 CCTGACATCTTTTTA  43 15
 THEYE_A0613 NONE
 THEYE_A0612 NONE
 THEYE_A0611 NONE
 THEYE_A0610 NONE
 THEYE_A0609 NONE
 THEYE_A0608  597514 ..  597528 -  -2.8  -4.71061   AGTTACATTGAAAAA               GAAGAA AAA TTCATC               TGTTAGCAAAACTAA  63 65
       groS2 NONE
        groL  594076 ..  594100 - -14.4   -5.7946   TTTTCAAGAAAAAAA          GGAGCAGACA ATTGA TGTCTGCTCC          TCTGTAAATTGGCGA 100 46
 THEYE_A0604 NONE
 THEYE_A0603  592335 ..  592345 -  -5.4  -3.43262   AAAAAATGAGAAAAT                 TCCT CGC AGGA                 TAGGATTGAAAGAGA  58 177
 THEYE_A0602 NONE
 THEYE_A0601 NONE
 THEYE_A0600 NONE
 THEYE_A0599 NONE
 THEYE_A0598 NONE
 THEYE_A0597 NONE
 THEYE_A0596 NONE
 THEYE_A0595  584484 ..  584494 -    -4  -4.55887   GTGGAAAAATACAAA                 TAAG ATG CTTA                 AAGGATTTAAAGAAC  65 403
 THEYE_A0589 NONE
 THEYE_A0588 NONE
 THEYE_A0587  574780 ..  574793 -  -5.3  -3.99878   ATATAGAAGAGGAAA               CTCTT GAAG AAGAG                TTTTTTGGAATAAAA  63 482
       gidA1 NONE
        gidB NONE
 THEYE_A0583 NONE
        rimI  569873 ..  569886 -  -2.4  -3.41795   AAATGCCTATTACAA               CTGA AATATA TCAG                GTTATATATGAAGGA  45 132
 THEYE_A0579 NONE
 THEYE_A0578  565597 ..  565607 -  -2.6  -4.46581   TAAAATTTTATAAAA                 TTAT ACC ATAA                 GACATTTTATTCTTA  58 50
 THEYE_A0577  564287 ..  564300 -  -5.3   -5.2853   GATTTAAAAAGAAAA               GGAAT TAAC ATTCC                TCTTACTGATGTTGC  82 156
 THEYE_A0573 NONE
 THEYE_A0572 NONE
 THEYE_A0571 NONE
         hpt NONE
 THEYE_A0569 NONE
 THEYE_A0568 NONE
 THEYE_A0567 NONE
 THEYE_A0566  554169 ..  554203 - -10.2  -3.67634   GAGCATTTTAAAAGA    CT-TGTG-CTCCCCCA AGGAA TGGGGGAGTCACACAG    AGTTATGATTTTATC  86 47
        trpB NONE
        trpA NONE
        accD NONE
 THEYE_A0558  545515 ..  545525 -  -2.6  -3.88232   GCCTGGAGATAATAA                 TTTT CAT AAAA                 TTTCTCCAAGACTTC  51 18
 THEYE_A0557 NONE
 THEYE_A0556 NONE
        purB NONE
       fusA1  538740 ..  538759 -    -5  -4.22927   TGAGTAACATATAAA            TTAGGCGA CCCT TCGGCTAA             AGCCTCAGGGTGACC  64 381
        argH NONE
 THEYE_A0552 NONE
        hypE NONE
 THEYE_A0550 NONE
 THEYE_A0549  533206 ..  533224 -    -6  -2.52795   AAGGTTCTTAATCCA             GCATCAGA ACT TCTGATGA             AAATATTCGGTGAAA  54 152
        truD NONE
        ligD  531119 ..  531130 -    -3  -4.42386   TGCCCATGCACAAAA                GATA GAGT TATC                 AATGCAATTGTTACA  60 153
 THEYE_A0530 NONE
 THEYE_A0529 NONE
 THEYE_A0528  516905 ..  516928 - -11.2  -5.09895   GACGTATGCAAAAAA          TGTCCTTTTT TGGT AAAAAGGACA           TGTAAAGACGAAAAA 100 206
 THEYE_A0523  510932 ..  510946 -  -2.1   -4.0281   ATAAAAATAATACAA               TCACA CATTT TGCGA               TCTTTACAAATCTTT  52 188
 THEYE_A0522 NONE
 THEYE_A0521 NONE
 THEYE_A0520 NONE
 THEYE_A0519  506954 ..  506964 -    -4   -4.7889   ACAAATATGTAAAAA                 GTTA TGC TAAC                 ATGGTTTTCAATGAA  68 124
 THEYE_A0518 NONE
 THEYE_A0517  504901 ..  504917 -  -3.1  -4.28774   GGAGGTAATTGAAAA              TATTATA GAT TACAATA              TCTCTCCGTAATCTA  57 18
 THEYE_A0516 NONE
 THEYE_A0515 NONE
 THEYE_A0514  501624 ..  501652 -  -3.1   -4.2828   TTTTACGGAGCAAAA        CTAATTGTTCCTG TTG CAGGAGAAATAAG        CTTAATGCCGGGAAC  60 321
 THEYE_A0463  446811 ..  446823 -  -4.8  -5.27476   TTGAAGAAAATAAAA                GCAG AGATA CTGC                TCAGAATGCTTTATA  80 285
        panC  445465 ..  445478 -  -2.5  -4.93696   TTTAAAGATTAAAAA               TTATT CAAC AATAA                GATTATCAATTAATC  66 12
         dtd NONE
 THEYE_A0458  442537 ..  442551 -  -4.3  -2.79501   CATAGTTTCAGCAGA               GGAAA TAGCC TTTCC               TGAACTGGGGACAGA  48 161
 THEYE_A0446  430769 ..  430781 -  -4.1  -3.52522   TGAGACAAATATTAA                GCTTC AGA AAAGC                ATTTGTAAAGAAGCA  55 437
 THEYE_A0437  421622 ..  421632 -  -2.4    -4.386   CAAGGGGTTATAAAA                 TGCC GAA GGCG                 GGATTTGAACCCGCA  58 11
        hisG  420296 ..  420307 -  -2.2  -2.69871   GCGTACATGAAACAC                CTCC TTAT GGAA                 TTACTTTATTCAATG  40 18
        rplU NONE
        rpmA  419678 ..  419695 -  -8.4  -4.46854   GCATGGAAGAAGAAA             GGGTGG TTTTAG CCACCC              TTTGATTTATTGGGC  85 32
        obgE NONE
        proB  417326 ..  417338 -  -7.7  -3.16492   TGACATGGACGAACA                GAGGA GAT TCCTC                GTCGCTAACGCTCCT  67 258
 THEYE_A0431  416632 ..  416662 -  -2.2  -3.21099   CTCTTTGATTATGAA      TTGTCTAAAATAA AAATAA TTATTTTA-ACAA       CTCATCAAGAAATCT  44 82
 THEYE_A0430 NONE
 THEYE_A0429 NONE
 THEYE_A0428  413155 ..  413168 -  -3.9  -2.50291   AATTATTTTATCAAC               TTGTT TCAT AACAA                TTAGTATTCAGACTA  45 7
 THEYE_A0427 NONE
 THEYE_A0426 NONE
 THEYE_A0425  409377 ..  409387 -  -2.6  -4.32903   ATGAAATAGTGAAAA                 TTTT GAT AAAA                 GCAGGAAAAAAGGTA  58 401
        aroE NONE
 THEYE_A0422 NONE
 THEYE_A0421 NONE
 THEYE_A0420 NONE
 THEYE_A0419 NONE
 THEYE_A0418 NONE
 THEYE_A0417 NONE
 THEYE_A0416  400997 ..  401025 - -10.4  -2.91264   CTTTTGAGTCAGAGA        TTCTGAGAGGTC ATTGA AACCCCTCAGAA        TGACATTTTAAATAG  81 108
 THEYE_A0415  400253 ..  400271 - -11.7  -3.76141   ATTAGGATTAAAAGA             GGGCAGG TTTTG CCTGCCC             CTTTTTTAATTATTT  95 35
 THEYE_A0414 NONE
 THEYE_A0413 NONE
 THEYE_A0412 NONE
 THEYE_A0411 NONE
 THEYE_A0410  394958 ..  394993 -  -5.4  -3.65351   TCACCCCGAGCGAAA    GCGAGGGGTCTAC-TCT TTT AGACGGAGATTCCTCGC    TTCGCTCGAAATGAC  59 173
 THEYE_A0409 NONE
 THEYE_A0408 NONE
 THEYE_A0407 NONE
 THEYE_A0406 NONE
 THEYE_A0405 NONE
 THEYE_A0404 NONE
 THEYE_A0403  390969 ..  390979 -  -2.6  -2.57931   CCCACTGTTCACAAT                 TAAA TTT TTTA                 TTCCTGTTCATTAGA  40 23
       coaBC NONE
 THEYE_A0401 NONE
         efp NONE
        accB  387690 ..  387700 -  -3.2  -2.57795   TCCATTATCAAGCTA                 CCTC AAT AAGG                 AACAATGGTTCTCCA  42 7
       accC1 NONE
       thiE1 NONE
 THEYE_A0396 NONE
 THEYE_A0395 NONE
 THEYE_A0394  382778 ..  382796 -  -3.2  -2.66435   ATTTGTATTATATCA             TTTTAATG TTT CTTTAAAA             AGCTCTGAAGGAGTA  42 4
 THEYE_A0393 NONE
 THEYE_A0392 NONE
 THEYE_A0391  379387 ..  379397 -    -4  -4.72386   TAAATCATCTAAAAA                 TATC GCA GATA                 TTATCACAGCAATTC  67 396
 THEYE_A0389 NONE
 THEYE_A0388  372471 ..  372503 - -14.5  -4.59109   TAGACTGTTCAAAAA      CTTGTAATTTATTGA AAA TCAACAAATTACAAG      TCCAGATTACGTTTT 100 32
 THEYE_A0387 NONE
 THEYE_A0386 NONE
         tmk NONE
 THEYE_A0384 NONE
 THEYE_A0383 NONE
        metG NONE
 THEYE_A0381 NONE
 THEYE_A0380 NONE
 THEYE_A0379 NONE
 THEYE_A0378 NONE
 THEYE_A0377  361747 ..  361759 -  -9.1  -2.71924   GAGTTTGTTCCAAAT                CTGCC AAA GGCAG                GTTCGGAATTTTCCC  72 92
THEYE_A0376a NONE
        glpX  360562 ..  360578 -  -3.8  -3.06696   CTTTGGCTCAAGACA              GTAAAA AGGAA TTTTAC              AATGTTATTTTTACT  48 22
 THEYE_A0375  359025 ..  359041 -  -5.1  -4.67982   GGCTATCTAACAAAA              TCTGCAG ATC CTGAAGA              ACTTTTAAAAGCTGT  72 307
        selD NONE
 THEYE_A0363  347860 ..  347877 - -12.7  -4.82678   TCATAAAAATTAAAA             GGAGGGC TTGA GCCCTCC              ACCTTTCTTATTCAA 100 33
 THEYE_A0362  346891 ..  346909 -    -6   -3.3854   AATCAGGACTTATAA             TGAGTCTT GTG AAGGCTCA             CGGAATTGTTCATAT  61 98
        scpA NONE
 THEYE_A0359  344430 ..  344443 -  -2.3  -3.12717   ATGGATCAATACAGA               CCCTG CTGG CAGGC                AAATGATTATCCAGA  42 132
 THEYE_A0357 NONE
 THEYE_A0356  342260 ..  342271 -    -3  -5.68039   AAACTGAGAAAAAAA                GAAT CCCT ATTC                 CTCAGGTTTTTCAAT  82 291
THEYE_A0333a  324758 ..  324790 -  -9.4  -4.00445   TACCAGTAATAATAA      TATCAGAAAAAGTT GCAAA AACTATTTCTGATA      CAGTTACTCCTCAAG  86 503
 THEYE_A0331 NONE
 THEYE_A0330 NONE
         def NONE
         fmt NONE
 THEYE_A0327 NONE
 THEYE_A0326 NONE
 THEYE_A0325 NONE
         rpe NONE
 THEYE_A0323 NONE
 THEYE_A0322 NONE
 THEYE_A0321 NONE
 THEYE_A0320 NONE
        accA  309590 ..  309604 -  -2.8  -3.93262   TGTAAGAAATGTAAA               TCAGAA AGA TGCTGA               TGAAATAATCAAAGA  53 222
 THEYE_A0316  307600 ..  307618 -  -2.4  -4.43571   ATAAAACCATTAAAA             TGACCTTA AAA TACAGTCA             CTTATCAAAAGCACA  57 146
 THEYE_A0310 NONE
 THEYE_A0309  304316 ..  304329 -  -6.7  -2.76798   CAAAGACCAGATAAG               CTGCA TAAT TGCAG                AGGCTGTCACAGAGG  57 400
 THEYE_A0286  284144 ..  284164 - -10.5  -2.87377   AGAGAGAAAATCAAT            CGGTGGAAA AAT TTTCCACCA            CTACATAAACCCATA  81 26
 THEYE_A0285 NONE
 THEYE_A0284 NONE
 THEYE_A0283  282762 ..  282780 -    -4  -2.57018   TACAAGAGAATATAG             TTTTTAAT TAT ATCAAAAA             TAATTTAGAAACAAT  45 99
 THEYE_A0282 NONE
        yajC NONE
        secD NONE
        secF NONE
        recJ NONE
        panB NONE
        tyrS  275247 ..  275257 -    -4  -4.66537   TCTGGGAAGATAAAA                 TTAC AAA GTAA                 TCAGGTATGAACCTT  65 26
 THEYE_A0249 NONE
         gap NONE
         pgk  248646 ..  248676 -  -5.6  -4.58685   AAAGCTTTTGAAAAA      GAGGGGATAGTCAT ACACG ATGACT--CCCCTC      TTTCTTTTTATTAAT  71 36
 THEYE_A0244 NONE
 THEYE_A0243  244868 ..  244912 - -16.8  -4.42788   CTGAATTTTATAAAA GGT-ATAAAAAAACGGGAGGG ACTG CCCTCCCGTTTTTTTATTATC AGTGTGATGCAGGGA 100 24
 THEYE_A0229 NONE
        uppS NONE
        cdsA NONE
         dxr NONE
 THEYE_A0225 NONE
 THEYE_A0224 NONE
 THEYE_A0223 NONE
        pgsA  226523 ..  226538 -  -2.6  -3.10255   ATAAGACTCATTTAA              TATTCC TCCA GAAATA               GAAAAGATACTTAAT  43 2
 THEYE_A0221 NONE
 THEYE_A0220 NONE
 THEYE_A0219  224549 ..  224560 -    -3  -3.48115   TCTGCATAAAACATA                GTTA ATTA TAAC                 ATTTTCTCAATGAAT  48 15
 THEYE_A0218 NONE
 THEYE_A0217  221500 ..  221512 -  -4.8  -2.73676   TTTAAAGGAAATGGA                GGCA TCACC TGCC                CGTGCTTTCAGAGAA  50 133
 THEYE_A0208  212099 ..  212115 -  -5.8  -2.69799   TCAGTGGAGAGAGCA              TCGGCC TCCGG AGCCGA              TGGTCGGAGGTTCAA  55 56
        guaB NONE
        guaA  208974 ..  208987 -  -2.5  -3.71645   AATTTTATATTTAAA               TTATA CACT TATAA                AATGGTAAAATGACA  48 54
 THEYE_A0204  208424 ..  208439 -  -7.6  -3.59984   TCAAAATTCATATAA              CTATGC TACC GCATAG               ACTTTTTCTTCAAGT  73 10
 THEYE_A0203 NONE
 THEYE_A0202  206407 ..  206417 -  -5.4  -3.14683   AGAGTTGGGTATGAA                 GGAA TTA TTCC                 CTCGGAGTGGGTTTA  54 397
        rfaD  203713 ..  203732 -  -2.2  -4.15118   TAAAAGAAGAAAAGA            TATTAATG CGGT CATTCATA             CGCATTCAACTTTTG  54 321
 THEYE_A0197 NONE
 THEYE_A0196  201779 ..  201797 -  -2.5  -6.11392   AAAGAAACAAAAAAA            TCTGTAAC TGTA GTTAC-GA             ACCTTGCGAGAAAAA  91 154
 THEYE_A0191  197169 ..  197185 -  -2.3  -2.64322   ATCGCATTTAAATAT              TTTAACA GGT TGTTGAA              TGAAAATTCCCGAAT  40 114
         tgt  195867 ..  195879 -  -2.7  -4.92239   GGAAAAATTCAAAAA                CTTTA TTT CAAAG                ATGGAGCAAAAATCT  66 155
 THEYE_A0189  194290 ..  194308 -  -3.9   -3.5332   AAACTTGTAAATGAA             CTTCAAA AAGCA CTTGAAG             ATATAAGAGTTTTAA  52 210
 THEYE_A0187 NONE
         lgt NONE
 THEYE_A0185 NONE
 THEYE_A0184 NONE
 THEYE_A0183 NONE
 THEYE_A0182 NONE
 THEYE_A0181  187220 ..  187235 -  -7.6  -4.21275   TCAATTGATTTAAAA              GAAGGA GTTA TCCTTC               ATCTTGATGATAAGG  78 146
 THEYE_A0178  185265 ..  185314 -  -3.8   -4.0274   TGTATTATGAAATAA GTTTGAGGCTGGCAGTTAATATCT CCTA AGTTATAAACTG--AGCCTCCAAC TGTCATTCCTCTTTT  58 171
 THEYE_A0177 NONE
 THEYE_A0176 NONE
 THEYE_A0175 NONE
 THEYE_A0174 NONE
 THEYE_A0173  177473 ..  177493 -  -2.6   -3.0579   AAAGGGTTTTAAAAC            TTTTTCCA TCCTT TGGGAAAA            TAGAGATCGCTGCAT  43 47
 THEYE_A0172 NONE
 THEYE_A0171 NONE
 THEYE_A0170  172634 ..  172648 -  -7.2  -2.54371   TTCTGTAAAGAAATC               CATTTC TAT GAAATG               TTTTTGTGAAGAGAG  62 16
 THEYE_A0169 NONE
 THEYE_A0168 NONE
 THEYE_A0167 NONE
 THEYE_A0166  168203 ..  168217 -  -2.1  -4.88228   ACTTAATAGCAAAAA               CACAG AATTA CTGTA               TGGGAAGACTTGACT  65 377
 THEYE_A0153  157776 ..  157786 -  -3.2  -4.62203   GGTAAAGAAGGAAAA                 GGAA CTA CTCC                 GTACCCATCTTTGGG  62 488
 THEYE_A0146  153682 ..  153697 -  -2.6   -5.0707   AAATATAAAAATAAA              GATACA AAAT TATATC               AATGATGGCGAACTT  69 269
 THEYE_A0143 NONE
 THEYE_A0142  147174 ..  147184 -    -4   -2.9348   CTGAAAGCTTACATA                 TCAA TTG TTGA                 AGGTTCTTCAAGGTA  47 8
        malQ  145143 ..  145164 -  -7.3  -4.14977   CAAGAGGAGAAAGAA           CTTCCTTCT ATCC AGAAGGATG            AGTCCGTCCAGCCTC  75 11
 THEYE_A0139  143103 ..  143131 -   -14  -5.24129   TTTTTCCATAAAAAA        GCCATGAAAGCT TCTTG AGCCTTCATGGC        TTTGATTCACCCTTC 100 159
 THEYE_A0138  142417 ..  142431 -  -5.8  -2.62118   AAAAAATAGTAATAT               TTCAAA AAA TTTGAA               TTATTTTCAGTTTTT  55 32
 THEYE_A0137 NONE
 THEYE_A0136 NONE
 THEYE_A0135  139732 ..  139754 -  -4.2  -4.31379   ATGAACTTATTAAAA           CTTTAAGAGA TTA TCCATTAAAG           CCAAGACATAGAATA  64 308
 THEYE_A0130  134541 ..  134551 -  -3.2  -5.64304   CAAGAGAAGAAAAAA                 CCCA TGT TGGA                 GAGTTTCTCACCCTG  82 128
 THEYE_A0128  133919 ..  133930 -  -4.4  -4.00348   TTTCAATCAATCAAA                CTTC TCCA GAAG                 TCTTTTCTTTTTTTC  60 5
 THEYE_A0127  131466 ..  131487 -  -4.4  -4.09963   CTGTAACAATAATAA           CGCCCTCT ATCGCA AGAAGACG            TCCTACCTCTTCTGC  60 94
 THEYE_A0125 NONE
 THEYE_A0124  125726 ..  125751 -  -3.1  -4.07568   CGGCGGTCTTGAAAA         CCGCTGTAGGG GTAA CTCTACCGGGG          GTTCGAATCCCTCCC  55 118
        leuD NONE
 THEYE_A0114 NONE
         asd  115475 ..  115486 -  -5.8  -3.03124   TTTTATGTCTGAATA                CAGC CTAA GCTG                 TCATTTTTATAAGTT  57 18
        metK NONE
        ahcY NONE
 THEYE_A0110 NONE
 THEYE_A0109  109946 ..  109979 - -11.7  -3.06515   TTTCATTTTTAAAAT     TTGCTCAGGGATGGC AGTC ACCAACCCTGAGCAG      TAGAAATTTTACCAG  89 34
 THEYE_A0108  109243 ..  109253 -    -4   -4.2558   CAGTTCTCAGGAAAA                 GTTA GAA TAAC                 AGGTGTGGTAAAAAA  59 466
 THEYE_A0104  107434 ..  107446 -  -4.1  -4.12475   GATAGATTACATAAA                TGCTC ATG GAACA                GCTACAAAACAAGGA  62 352
 THEYE_A0100 NONE
        lepA NONE
        lepB NONE
        ribE NONE
 THEYE_A0096 NONE
 THEYE_A0095   98566 ..   98580 -  -3.6  -3.14848   TCTTTTCATGAAAAC               CTCTTT GTC AAAAAG               TTTTTAAGTATATCA  46 38
 THEYE_A0094 NONE
 THEYE_A0093 NONE
        lpxD NONE
        fabZ NONE
        lpxA NONE
 THEYE_A0089   92576 ..   92593 -  -4.1  -5.00846   CAAATATTACAAAAA             GGATTCC AAGT GGAATGC              TCAGGATAAAAAATA  73 140
 THEYE_A0084 NONE
 THEYE_A0077   81140 ..   81152 -  -4.1  -4.52949   CTGGTAAAAAAAAGA                TGAGA ATG TCCCA                GAGTTATTTTAATGT  62 214
 THEYE_A0075   79813 ..   79864 -  -4.4  -3.05844   GGTTTTATTGGAAGA GGT-GAGGGGATTGCTGCTCAAGCA ATA TGCCTGAGCAGCATTACATTAGACC CTTAAGATATTTTGA  50 19
 THEYE_A0059   60685 ..   60697 -  -4.9    -4.386   GAATGGCTCAGAAAA                GAAAT GAA ATTTC                ACAATATTCAAATAT  67 78
 THEYE_A0052 NONE
 THEYE_A0051   55829 ..   55844 -  -3.3  -4.00323   GGAAATATATAATAA              GACAT AACGAA ATGTC               AAGAAATTCTTAGCC  56 95
 THEYE_A0050   55235 ..   55253 -  -5.3  -4.84359   TCAGGGTGACAAAAA            GGTG-GAG ATTC CTCGCACC             CATTGAGGGTGTTCA  74 176
 THEYE_A0049 NONE
 THEYE_A0048 NONE
 THEYE_A0047   52859 ..   52877 -  -3.2  -4.39166   CCTGAGAGATTAAAA             CAAGTT TTGGATG AACTTG             AAGCCGTAGCAAATA  60 76
 THEYE_A0042   49232 ..   49248 -  -2.9  -3.00946   TTTTTTCATAAATTA              CTTGCAG GTG CTACAGG              AAGAAGACTTGCAGG  45 6
        gyrA NONE
 THEYE_A0040 NONE
 THEYE_A0039   42630 ..   42646 -  -3.1  -3.98775   ATAAACTGAACTAAA              TATAAAA AAT TCTTATA              ATAGAATTAAGCAGA  55 32
 THEYE_A0038   41175 ..   41186 -  -2.2  -3.57587   ATTACTCAAATAACA                TGCC AGAA GACA                 AATTAAGTAAAATAA  47 143
 THEYE_A0037 NONE
 THEYE_A0036 NONE
 THEYE_A0035   38123 ..   38158 -  -9.8  -5.40072   TCTTTTGTAAAAAAA    GATAAAATGGCTCGTC CTAT GACGAGCCACATTATA     AAGGAAAGGGTATAA 100 60
 THEYE_A0034   36076 ..   36090 -  -7.2  -3.37188   ACTCATTCTAAAAAT               GTTACT AAA AGTAAC               TAAGGATGTTTATTT  66 52
 THEYE_A0033 NONE
 THEYE_A0032 NONE
 THEYE_A0031 NONE
 THEYE_A0030 NONE
        acsA   29274 ..   29302 -    -9  -3.08522   TATGGACTTGAAAAT        CCTGACTTTAAT TTAGT ATTAAGGTCAGG        TAGCATTGCAGAAAG  71 257
 THEYE_A0027 NONE
 THEYE_A0026 NONE
 THEYE_A0025   25814 ..   25863 - -11.7    -4.287   AAAGAAAGTTTAAAA CTATAGTTTGTTAGAAATGTTCC ACGT GGAACATTTCTAACAAACTCCTC CCTTTGTTACAAGTA 100 12
        kdsB NONE
        pyrG    8460 ..    8490 - -12.7  -3.44325   ATTGGTTATAACTAA       TAGAGAAGCGGGA GACAT TCTCGCTTCTCTA       TTTATTCTTCTCGTA 100 79
