JTM80_RS00025    8164 ..    8183 +  -3.4  -3.03771   TCGTCACATCGTTTA            GAGACACC GTTA GGTGACAC             TGTTGAGAACTGTCA  44 134
JTM80_RS00030   11520 ..   11566 +  -4.3   -3.5394   TTTTTGACCATCGGA TAGCAGGGACGAGG-AGTTGGC TTGT GCCCCTTGCCTCGTCCTGGCGA TTTACCACGAGGTTT  51 212
JTM80_RS00040   13176 ..   13226 +  -2.5  -3.72576   GAGAGACACGCCCTA CCC-CCGCTTGGCAAACGTAGCCCT GGT AGGGATA-GTTGGCGGCGTGGTGGG TTTCGTCGGGGGCGA  51 47
JTM80_RS00050   15350 ..   15367 +  -6.9  -3.54935   CGCTGGAGTTGATTG             GGCGATC GCCA GAACGCC              TTTAAGGAGCATTTA  62 3
JTM80_RS00065   17345 ..   17360 +  -3.2  -4.09685   GTTTAAGCGCCTAGA              ATGCTG AAAG CAGCAG               TTTTCAAACCTCCCG  56 35
JTM80_RS00070 NONE
        pdeM   20752 ..   20782 +  -5.4  -4.18018   GACAATTCAATACAC      CTG-GTCGTCCCC ATTCTC GGAGGCGACCCAG       TTTTCGCTGCCCCCG  66 327
JTM80_RS00080   21376 ..   21394 +    -6   -3.6715   GCGTATTTTGATATA             GTCTATTC AGT GAATTGAC             TTTACCCTTAACTCA  62 373
JTM80_RS00090 NONE
JTM80_RS00095 NONE
JTM80_RS00100   30317 ..   30328 +  -2.2  -3.52906   CGCCCGCGTTAGCCC                TCAG CGCC CTGG                 TTCTGTCAGCTTATC  47 389
JTM80_RS00125 NONE
JTM80_RS00130 NONE
JTM80_RS00135   38515 ..   38535 +  -6.9   -3.1247   GAACATTCTCGCCAA            TTGCAATGA GCA TCATGGCAA            TTGCATCTAGCCGAT  54 390
JTM80_RS00150   40311 ..   40323 +  -4.8  -3.35813   TTGGCTCAATGCGCT                CAGG TTTTT CCTG                TTCCTTGCAGTCCCC  52 485
JTM80_RS00155   42069 ..   42093 + -10.8  -4.19238   GCGGCTGCTCAAAGG         CCCCACT-CCA GCTA TGGCAGTGGGG          TTTTGCGATTCGGCA  88 269
JTM80_RS00160   43535 ..   43553 +  -5.2   -3.3344   TTGGCTGCTTTGCAA             CGGCTG CTCAATC CGGCCG             TTCTGGAGCTTGGCT  53 73
        proC NONE
JTM80_RS00235   58228 ..   58250 +  -6.2   -3.2918   GCTCCATCGTGGCGA           CTGCATTGCC GCT GGCGACGTAG           TTCATCTGGATATAT  54 311
JTM80_RS00245 NONE
JTM80_RS00265   65343 ..   65354 +  -4.4  -3.76402   GGGGTGATGTTGACT                TTGC TATC GCAA                 TTTACTAGATGCACT  56 96
JTM80_RS00270   66155 ..   66171 +  -2.2  -4.17089   GACAGAGCCACTGAT              CGCC AGTCCTCAG GGCG              TTTTGACCCTTTCGC  57 61
JTM80_RS00285   69472 ..   69497 +  -2.5  -3.30452   TCTACGCCGGAACCC         GT-TGCGCCATG AGT CGTGTCGCAGGC         TTGGTGATCTTGTTG  44 14
JTM80_RS00290   70933 ..   70948 +    -9  -3.53012   GGGGCCTCAATCGGC              GATCGC CAGC GCGATC               TTTCCAAGGCAGGAA  70 273
        ftsH   74146 ..   74158 +  -7.7  -3.01712   TGCCGTGTAGCGGGC                GATCC CAG GGATC                TCTTGGCAGGCGGGG  56 106
JTM80_RS00320   78728 ..   78743 +  -5.4  -3.05963   GGCGGGTCTGGGCTG              CCAGGA TTCA TCTTGG               TCTTCACCTCGGCAT  51 310
JTM80_RS00340 NONE
        nrtS   82799 ..   82816 +  -3.3  -3.63515   TGCATGTAAAACTGC             CAGTGTC CGTC GTCGCTG              TTGTTGGGGCTGACG  49 405
JTM80_RS00355   84445 ..   84465 +  -3.2  -3.76373   GCACCGCGCACAGCA            TCAGCCCG TCGCC CCGGTTGA            TTTGCATCTTGACCA  52 430
JTM80_RS00365   87354 ..   87366 +  -4.7  -3.18264   CTCTGCCCAGTCCGC                GCAGG CGA CCCGC                TTCGTCGATGCCCAC  49 234
JTM80_RS00375   93155 ..   93167 +  -5.5  -3.91506   GAGCCAGCAGTTAAC                CGCTG GGG TAGCG                TATTTTTGCAACTGC  61 396
JTM80_RS00385   95467 ..   95481 +  -5.6  -4.36914   TCGTCGAGGTGAATT               GGCTGA ATT TCTGCC               TTTTGTGAGAGCGCG  69 63
JTM80_RS00390   96750 ..   96779 +  -6.3  -3.78409   TCTGCTGCACAGGCA       GCCCGTAGACCTC GGCG GAGTTGTTCGGGC        TTTCGATTAGCTTGA  61 105
JTM80_RS00405 NONE
         rph  100590 ..  100604 +  -2.7   -4.4009   AGCAAGACCCTGGAC               GGGCG ATCGC CCCCC               TTTTATCGGCTCAAA  61 40
        cysE  101779 ..  101823 + -30.3   -3.1994   ATAAGTTTTCTGGAT TTTGGAGGATTTCTCGCGGGC GCA GCCCGCGAGAAATCCTCCAAC TTCGTAAGTCCTATG 100 272
JTM80_RS00420 NONE
JTM80_RS00425  103091 ..  103102 +  -7.2  -4.19258   ATCTATTCGCAAATC                GGGC GATC GCCC                 TTTTCAGTCCCCTCT  74 92
JTM80_RS00430  103932 ..  103953 +  -5.9  -5.08088   AGCTTGATAGAAAAA           GG-CAGGTAC GGC GTATCTGTCC           TTTTTGTTGCGGCTT  86 61
         fbp  105311 ..  105327 +  -7.9  -3.14132   TCCGTGCGGTCTTAG              TGGGCGG CAA CCGGCCA              TTCCTAAAGCCCACA  59 26
JTM80_RS00440 NONE
        opcA  108696 ..  108707 +  -3.6  -3.75629   GTCTTTTAGCGCGGT                TCGC CTTG GCGG                 TTTGCCTTACAGATC  54 64
        pxcA NONE
JTM80_RS00460  113769 ..  113779 +  -2.4  -3.47349   TCGGCCCAATCGGCA                 CACC CAG GGAG                 TTATAGGTTTCCCGA  46 510
        glnA  116482 ..  116514 + -20.1  -3.66999   TCTCTGGGTTTTGAA      TAATTTCTCGCGGGC TGC GTCCGCGAGAAATTA      TTTAAATGCGTAAAT 100 162
        gvpA  120739 ..  120761 +  -7.7  -3.82202   CTAGTAGGAGATGTT          G-GGGGAGTC TCGT GGCTCCCCGC           TTCTCTTTCCGCATC  69 119
JTM80_RS00485 NONE
        gvpN  123540 ..  123569 +  -7.8  -2.93435   GACCTTAAGGCGGTT       TCCCCCCTTGTT AAGGGG GGCTAGGGGGGA        TCTCTGAGTGCTTAA  57 159
JTM80_RS00495  124397 ..  124408 +  -5.8  -2.88663   GATGGGTGCGCCGTG                CTGC TTGG GCAG                 TGTGTGCCCGTAGAT  48 363
JTM80_RS00510  127924 ..  127959 + -13.4  -4.74103   TCCTTTCAAGCAAAA    TCCCCTGCTTC-TGGCA CCG TTCCAAGAGGCAGGGGA    TTTTTAGGTTACGCC 100 122
        groL  136177 ..  136209 + -11.4  -4.44277   CCATACTGCAAAAAA      TCTCTGCTTGATTC AATTC GATTCAGGCAGAGA      TTTTAAGTTTTGATG  95 77
        apcA NONE
        apcB  139559 ..  139574 +    -4  -5.14965   TTTAAGAATTTTTGG              GTTGAT ATCA ATCGAC               TTTTTTCCTCAACGT  78 220
JTM80_RS00545  140019 ..  140035 + -10.9  -5.75342   TCTACTGAGGTAAAC              GAGACCA TTA TGGTCTC              TTTTTTTTGCCGAAA 100 170
JTM80_RS00550  141340 ..  141351 +  -7.2  -2.65091   AATGCCAGGGCACAG                GGGC GATC GCCC                 ATTCTCCGTTCAGAT  50 516
JTM80_RS00570 NONE
        cbiE NONE
JTM80_RS00580  146240 ..  146250 +  -2.4  -4.15657   AGGAAAGAGGGTTAG                 CCCC TTA GAGG                 TTTCTGTGGTTGTAC  57 205
JTM80_RS00585  147619 ..  147637 + -13.2  -2.73635   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  79 168
JTM80_RS00600  152122 ..  152135 +  -9.5  -2.74144   CGGCCCCAGTCGAAT               CCCGC GTCG GCGGG                CTTTGCGCGTGGCCG  61 477
JTM80_RS00615 NONE
        grxC  155214 ..  155240 +  -5.7  -3.95456   TCGTAAGCAACTGAC         CCGACTTGCCG ACAAA CGGCAGCCCGG         TTTCGTCTTCGGTTT  64 469
JTM80_RS00640 NONE
         xth  160538 ..  160565 +    -2  -3.03124   TTCCTCGGCCTTCGG        CAAGGTCAGGT TCAAGAT ACC-GTCCTTG        TATTCAGCCGTAACC  41 435
        hslO  164739 ..  164765 +   -13  -5.45813   AACCTACCTCTCGAA         CCGGGCTGTTGA ATC TTGACGGCCCGG         TTTTATTTTTTGATG 100 61
JTM80_RS00665  166223 ..  166234 +    -3  -3.85698   AATCCGCATCTGCCA                GTTA GTGC TAAC                 TTTGTGGGCGGGCGG  54 21
JTM80_RS00670 NONE
        argB NONE
JTM80_RS00680 NONE
JTM80_RS00685  171302 ..  171354 +  -2.9  -5.88197   AGAAGAACGAAGAGA GAAGAACGAAGAGGAAAGGGT TTTCGGTTTTC GTTCTTCCTTTTTCGTTCTTC TTTTTTTATCTTTAG 100 62
JTM80_RS00695  175993 ..  176012 +  -3.5  -2.76404   GGCTATGGTAGATAG            GCGGG GCCCATCACG CCCGC             TGAGTTTTACCTGAA  44 30
JTM80_RS00700  176466 ..  176480 +  -2.1  -4.82901   GTAGCGTTCTGCCCA               GTCTT CGCCA AAGGC               TTTTTCTAGCACGCG  70 149
JTM80_RS00710  178172 ..  178197 +  -2.4  -2.54204   ATGCGGCGCTGGCGG         CTCTGCCCAC GGGGTA GAGGGGAGGG          GATTTTGGATTTTAG  38 9
         sat  182602 ..  182624 +  -2.6  -3.10879   GTCAAAGAGGCAGAT           GGGGCTTTTC GAT GAGGGGTTCC           TATCTTCAACTTGCT  42 87
JTM80_RS00735  183465 ..  183478 +  -3.8  -3.50447   GCTGAGCCTTCTTAC               CGCT GAACTG AGCG                TTATCTGACCATTCA  52 20
JTM80_RS00740  183947 ..  183959 +  -3.3  -3.32997   AGCACTGGGGTTGAT                CGAGC GCT GCTAG                TTAAGTTTATGCAGC  46 112
JTM80_RS00745 NONE
JTM80_RS00750 NONE
JTM80_RS00755  186264 ..  186283 +  -2.1  -4.89393   TGCCAGGTTCTAAAC            CTTCTCA TCTAAC TGTGAAG             TTTTTCTCAGATTTA  68 397
JTM80_RS00760  187078 ..  187089 +  -5.8  -4.12188   CTACAGTTCTCGGCT                CCGT GCCG ACGG                 TTTTCAAAATACTCA  66 92
        cpcA  187642 ..  187700 + -21.2  -3.95183   CTAGTTGATTGTGCT TGCCCGGAAAGGTAAGCAATTGCTGGTT CAC GACTGGCAGGGGTTTACCTTTCCGGGCA TTGTTATATCTGTGC 100 37
JTM80_RS00770 NONE
JTM80_RS00775  189885 ..  189899 +  -2.1  -3.55444   TTAGCGTGTCGCTAG              CC-AGC GCAA GCTAGG               TTTCAGGAATCAGGG  47 12
JTM80_RS00780  190245 ..  190258 +  -2.3  -3.14132   ATTGTCAAGATCGAA               CCGCT GACG AGCGA                TTCATAAGCACGCGA  42 5
JTM80_RS00785  191246 ..  191266 +  -3.9  -4.52857   GTTGAAAAAGGCAGC            GGGGAAG CAAGCCC CTACCCC            TTTTCTCTCAACCCT  66 109
JTM80_RS00790 NONE
JTM80_RS00795 NONE
JTM80_RS00800  193709 ..  193740 +  -4.4  -3.85817   GGCCAGCTTCCCCGT      CCGCTAAAAGTCTGG CCT TCAGGCGT-TGGCGG      TTTGTGAAAGGCGGT  59 19
JTM80_RS00805 NONE
JTM80_RS00810  196500 ..  196528 +  -2.3  -4.42788   GCGTTTCAGGCAGGG        TGCTGGGCAAGCG GCC CGATTGCTCACTG        TTTTCTAGCATTCGG  64 485
JTM80_RS00820  199071 ..  199089 +  -5.8  -3.13403   TTGATGCCGATGACC             CCTGCGCC GAC GGGGCCGG             TGTTGATGCCGACGC  49 346
        folP NONE
JTM80_RS00875 NONE
JTM80_RS00880  216018 ..  216071 +  -9.8  -4.31065   AAAACGAAGAACGAA GAACGAAGAACGAAGAGTGAAA CTTTTTCTCT TTTCTCTCTTCACTCTTCGTTC TTTCCTTTTCTCTCT  87 71
         maf  216877 ..  216896 +  -3.5  -4.18762   CCACCCTACCCTGGT            GCATCCG CCAGAC CGGATGA             TTTTGCATGAACCTT  61 207
JTM80_RS00890  218185 ..  218199 +  -2.8  -4.07246   AAAAGCGGTTTCTCG               GAAATC CTT GATTAC               TTTAGTTTGGACTAA  56 117
JTM80_RS00900  220867 ..  220877 +  -3.2  -2.73243   GTGATGGTGAAATAG                 TTGC TGG GCAG                 GTTTGGCGAATGGAT  41 289
JTM80_RS00915  223958 ..  223979 +  -6.7   -4.3078   TCTGATAAAACGCAA           TTCTGTATT TTTA GATACAGAA            TTTATTGCTATGATT  74 408
JTM80_RS00920  224378 ..  224411 + -13.9  -5.63857   CTTTTTCTCCGCTCC     GTCGGGGAGGTATCG ACAC CGATGCCTCCCTGAA      TTTTTTTGAATTTTT 100 159
JTM80_RS00955 NONE
JTM80_RS00960  232932 ..  232953 +  -9.4  -3.31144   CGCGAGAATAAGAAA           GGGAGGGC TGGTTC GCTCTCCC            TTCTACGAATCCCAA  67 44
JTM80_RS00985  237817 ..  237832 +    -4  -3.53012   TTTCTAAAGGGTTCT              TTCTGA CTAG TCGGAA               TTTGGAGGGCGAGCC  52 135
JTM80_RS00990  238245 ..  238299 + -11.7  -3.28001   GAAATTCAGCTTAAC GAAGCCCT-GA-CTCCTGAAGCGTC TGATGAT GACGCTTGAGGATATCTAGGGCTTC TTCGGTTTCGACCTG  79 210
        psaK  239670 ..  239691 + -10.9  -3.28984   GCCTCGCAAGAGTGC           CGCAGGCTTG CAG CAAGCC-GCG           TTAGTCATTGGGTTC  73 147
JTM80_RS01005  240150 ..  240166 +  -3.6  -3.57462   GGAGACTTTCTGCAA              GCCCCT GGAGG AGCGGC              TTTGAGCGTCGGATG  52 4
        dacB  241776 ..  241790 +  -2.8  -3.57561   AACGCATCCCCCAAA               GTGCTT TCA AAGTGC               TTTCCCCCATTGCCC  49 41
JTM80_RS01015 NONE
        prfB  246095 ..  246106 +  -2.2  -4.11216   GGGCCATAGCCCAGC                GGTT CGTA GACC                 TTTTGCAGATGCAGC  59 201
JTM80_RS01030  247605 ..  247617 +  -4.8  -3.10975   AGAGGGAAGAACGAA                GAGG GAAAG CCTC                TATTGGCTGATCAAT  48 78
JTM80_RS01035 NONE
JTM80_RS01040  249240 ..  249257 +  -5.5   -5.4505   TCCTCACACCCGAAA             GCGCC CAGTTGAT GGCGC              TTTTTTATTAGAACA  91 164
JTM80_RS01060  254105 ..  254116 +  -7.2  -4.17048   TTCAGGTTTCTAAAG                GGGC GATC GCCC                 TTCTTTTGCCCAAAA  74 163
JTM80_RS01065 NONE
JTM80_RS01070  256590 ..  256606 +  -2.9  -3.90358   TTTTGGGGTTTGATA              CTTGCGT TCT ACGAGAG              TTTGGTCTGTCGTAT  54 88
JTM80_RS01075  257396 ..  257418 +  -4.8  -4.23104   CTTGTTGGACTACCA           GCCTCAGTGC GTC GTATTCAGGC           TTTGTTCCAGTTTGC  63 330
JTM80_RS01100  262825 ..  262845 +  -3.9  -2.92951   GTGCTTACATCCAAG            CCGCTGTAG TTT TTGCAGGGG            GTTTGTAACGCTGTG  45 17
JTM80_RS01105 NONE
JTM80_RS01110  264238 ..  264270 +  -4.9  -4.82901   GCCCGCGACGATGCC      GTAAAGTTCGGTG TAGATCT TGCCGTACTTTAC      TTTTTCTAGGGCGGA  76 229
JTM80_RS01120  267200 ..  267212 +  -4.8  -4.63218   CGCTTTGGCTGACTA                CACC ATCAC GGTG                TTTTCTTCCGCAAGC  70 250
JTM80_RS01135  272059 ..  272072 +  -2.3  -2.74012   TTGTACTGCAACCCC               TGGGG CGAT CGCCA                TGATTCGACTGCTGC  39 64
        sbcD  273757 ..  273775 +  -9.6  -2.73635   CATGATTCCCCTAAA             TCTCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  65 391
JTM80_RS01165  279606 ..  279622 +  -8.7  -3.90762   GGCCTGGCTGGAGCG              CGGTTCA ATT TGAGCCG              TCTTTTTGAGCCGTC  75 13
JTM80_RS01170  280260 ..  280274 +  -4.9  -4.07568   GTTTGCTTGCCATTC               TCCGG TGATT CCGGG               TTTTACGGCGAGGCG  62 324
JTM80_RS01180  282414 ..  282424 +  -4.6  -3.44998   CAACATCGCCAGTCT                 GTGG GTG CCGC                 TATTATTGCTGGGTC  52 86
JTM80_RS01185  283351 ..  283364 +  -2.4  -3.12606   GAAAACTCTGCTGTG               TCCA ACTTGC TGGA                TTAGCTGCTGTGTCC  42 8
JTM80_RS01190  285070 ..  285098 + -18.9  -3.37761   AATCAAACGAATTAG        GCGGGACGTTCTG GTA CGGAGCGTCCCGC        TTGCTCTATTCCGCT 100 164
         ffh  286756 ..  286791 +  -6.9  -5.32944   AACTCGCTATGAAAA    GGGGGACTCTTCTTGA CTCTT TCTAGAAGC-TCCCCC    TTTTTTGCTTGTGCA 100 67
JTM80_RS01210  291139 ..  291149 +  -6.8  -3.28791   GCCGCCGCACCGTTT                 CCAC ATT GTGG                 TTGTAGCAGGCAGGT  56 418
JTM80_RS01220  292698 ..  292708 +  -6.8  -3.34043   AAAAGCTGAAGTAAC                 GGCT CGA AGCC                 TTGTGGGGTGGTGCA  60 27
JTM80_RS01235  295176 ..  295186 +  -4.6  -3.91897   TACGCCTGAGGCACT                 GCTG CAA CGGC                 TTTCTCAATCAAGGG  59 195
JTM80_RS01255  296611 ..  296643 +  -4.2  -3.16935   AAGCGCTTCGACTCT      GGGCTGATGTTGCT CCGGA AGTAAGATTAGCTC      TTGATGGAAGTCTTT  45 70
JTM80_RS01265  298522 ..  298532 +  -5.4  -3.22475   TCTCAATGGTCAATT                 CTCA TCC TGAG                 TCTTGTAAGACTGGG  53 16
JTM80_RS01280 NONE
JTM80_RS01285  304796 ..  304807 +  -7.2   -3.8381   TGCGGAGTTGGGCAG                CGGC GATC GCCG                 TTTCCTCGTCTGTAT  66 119
JTM80_RS01305  307358 ..  307387 +   -10  -4.25104   TATCTTACAGCTTGT       CGAGCGTGCAGG ATTCAG CTTGTGCGCTCG        TTTTGGTGGGCCCAA  83 253
JTM80_RS01310  309113 ..  309168 + -13.2  -5.22312   GACATTAATAAACAT AAAACCCAAAGACCCTGCGCTGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGGT 100 127
JTM80_RS01315 NONE
JTM80_RS01320  310656 ..  310684 +  -9.6   -4.8622   AAAATTTTTGGAAAG        GCGGTACTGG CCTGCAAAT CCAGTGCCGC        TTTTTAGTTGGAGGC 100 57
        lipA  311928 ..  311949 +  -2.3   -2.9155   TATTCAGCGCCACAG           CATTTGG GATAATGG CCAGATG            TCTCGTCTTACAGGA  41 91
        hisB  312796 ..  312816 +    -4  -3.77196   CTTGCAGGTTGGGAA            TGGTGCTG ACATC TAGCATCA            TTTGATCCATCGTGA  54 209
JTM80_RS01345  314394 ..  314418 + -15.7   -4.8622   GTCATCGGCATATGA          CCCCTGTGCGG CGA TCGCACGGGGG          TTTTTGCTTGGGCGA 100 26
        corA NONE
JTM80_RS01360 NONE
JTM80_RS01365  319805 ..  319825 +  -2.6  -3.89614   GTGCCCGACGCAGAA           TCTCGCCAA ACAG TTGG-GAGG            TTTCTACGCATTCCG  53 416
JTM80_RS01380  322019 ..  322032 +  -2.3  -4.07246   AAACCCAAACCATAG               CCCAA ACTT TAGGG                TTTGCTTTCACCTGC  55 39
JTM80_RS01385 NONE
JTM80_RS01390  325764 ..  325810 + -27.5  -4.89838   GATTAAAAAACAGAT CCC-GA-ACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGTCTTTGGG TTTTATATTTATTAA 100 67
JTM80_RS01395  326131 ..  326183 + -11.3  -2.64765   GCGATTAAGGTTTCT GGGTTTTGGACGATTTCTTGCGGGC TGC GCTTGCGAGAAATCGTCCAACTGCG TAAGTTCTATCCTTC  70 95
JTM80_RS01405  330119 ..  330137 +  -6.7  -2.69151   GGACTCGATCACGGT             GCATGGG AGCCA CTCATGC             TGATGTATCCAGCAG  52 367
JTM80_RS01425  335364 ..  335402 + -15.4  -3.18274   AATAGGGATTCTCTG   GCTCATCCATCTGGCTTC TAG GAGGACAGATGGATGAGA   TTGCATTGCGCTCCG  89 39
JTM80_RS01430 NONE
JTM80_RS01435  337429 ..  337441 +  -3.3  -3.24613   CTGCGCCACGTAGCC                CGCCA GAA TGCCG                TTGACTTCGTTGGTG  45 271
        deoC  340124 ..  340148 +  -3.4  -3.96148   GCGTAAACACGAGTC          CAGCCTGCGG GGACG CAGCGGCCTG          TTTGTGGTAAACCAA  54 238
JTM80_RS01455 NONE
JTM80_RS01460  344274 ..  344295 +  -5.2  -2.96387   AGGGATAAAAAACGT           TTAGAGTG ATTCTG CACTCTGA            CTTATTCTGTCTCTC  49 180
        secE NONE
        nusG NONE
        rplK  345795 ..  345809 +  -2.8  -2.60947   GACGATTGCCGACTA               GAATCG GCG CGATTG               AGTTTTGTGTGATTG  40 25
        rplA  346846 ..  346865 + -12.8  -5.56372   ACTCTGTCTGGACTT            GCCCTGGC GATC GCCGGGGC             TTTTTCTTTTCGTTT 100 244
JTM80_RS01485  347492 ..  347512 +  -5.3  -3.56568   CTAGTGGAGTGTGTA            GCCCGGTTG GGG CGATCGCGC            TTTGACCAATGGTTC  56 37
        rplL  348171 ..  348193 +   -12  -5.18357   GTAATTCATAAAAGA           GGTCGTCCCA ATT TGCGACGACC           TTTTTTGATGGCTTG 100 215
JTM80_RS01545  359853 ..  359879 +    -3  -4.08692   TGCAACAAGACAAAA         TTCTCTAGGGCA GAG TTCTTTAGGGAA         TTTTGCAGAAAGTTC  56 121
JTM80_RS01550  362228 ..  362243 +  -7.5  -3.59979   CAGGGGTGCTTTGGG              CCCGG TTCAAT CCGGG               TTTAAACTGAAAAGC  64 168
        murB  363662 ..  363673 +  -7.2  -3.76224   TACATAGTCAAAATG                GGGC GTTT GCCC                 TTTGATGACTGCGCC  63 359
JTM80_RS01570  367145 ..  367158 +  -3.8  -3.61517   GTGAAGTATTCTAAA               CAGC GCGGCG GCTG                TTCTTCACAAGCAAT  52 109
JTM80_RS01575  368510 ..  368521 +  -2.2  -4.88388   TGGGCGTTGCGCTGG                TCAG CGGG CTGG                 TTTTTGTCGGGTTAT  68 359
JTM80_RS01580  370472 ..  370482 +  -4.6  -2.88389   TCAGACCAACAGGCT                 GTCG GCG CGGC                 TCATTCCTTCTACTT  47 162
JTM80_RS01585  370981 ..  371012 +  -8.7  -5.29782   TCGGTTCATCGTAAG      AGGCGATCGCC CAGCGCAAGA GGCGATCGCCC       TTTTTTATCGCTCTA 100 49
        argG  374101 ..  374147 +   -24  -2.94938   GGGCCGAAACCCGGA TGCGAGTTGATTGTTTGTGTGC GAT GCACCCAAGCAGTCAACTCGCA TCTCTAGAGTTTTGC 100 65
JTM80_RS01605  377583 ..  377593 +  -8.2  -2.73542   CTCTGCCTCAAAAGC                 GCGC AGG GCGC                 TGCTTGAGCCTTGGC  59 143
JTM80_RS01625 NONE
JTM80_RS01630  384180 ..  384192 +  -6.2  -2.58579   AACCTGATTGAGGAA                CCGC GACCA GCGG                CTTATGCCCCCTTGC  50 306
JTM80_RS01635  386192 ..  386204 +  -4.7  -3.90744   CTGGAAGCCTCTCCT                CAGCC GTA GGCAG                TTCTTTGGGGACAGA  59 17
JTM80_RS01660  395072 ..  395095 +    -6  -3.57144   TCCACCAGTCGGCCT          TG-TGGCGGTG CAG CGCTGCCAGCA          TTTGGGAATAGCGGC  58 501
JTM80_RS01680 NONE
        panB  399403 ..  399421 +  -3.9  -2.72204   AACACAAACTCAGGA            CTTA-CGC CCTT GCGATAAG             CTCTTTGGGTTTTGG  44 184
JTM80_RS01690  400160 ..  400175 +  -6.8  -4.56597   CGCCTCGATGACCAC              GCGCAGG TTG CC-GCGC              TTTTTCACCACACGG  76 211
JTM80_RS01720  407640 ..  407650 +  -5.4  -4.35926   GGGTTGTGTCTCGTG                 TCGA TCC TCGA                 TTTTGGATTTGCGAT  69 337
JTM80_RS01725  408720 ..  408732 +  -5.5  -3.03505   CGCCCCTTACACATC                TGCTG CAT CAGCG                TCCTGTTTTTGAATT  51 56
        clpB  411574 ..  411584 +  -2.4  -2.50935   CTGTTGCGGTTTCGC                 AGCC CGT GGCA                 ATTGATAGCTAAGCT  38 3
JTM80_RS01735  412493 ..  412505 +  -3.4  -2.79456   GGTACTATGGATTTC                GTGA CAAGT TCAC                TAATTAAGTTGAATT  41 99
JTM80_RS01740  414538 ..  414560 +    -4  -3.90291   CCCGACATCAATCTC           CTCCTGGTTC ATG GAGGCGGGGG           TTTCGTTGCCCACCT  57 247
JTM80_RS01765  420140 ..  420150 +  -4.6  -3.14931   TCGGCGGGGTCGAGG                 CCCG CAG TGGG                 TTCATCCACAATCAC  47 501
JTM80_RS01785 NONE
JTM80_RS01790 NONE
JTM80_RS01795  423502 ..  423512 +  -2.4  -4.02905   TCATTTGGATACACA                 CGCC GCT GGGG                 TCTTTTTCCTATGAT  55 52
JTM80_RS01800  425360 ..  425373 +  -3.7  -4.18018   GCAGCGCCGCCACGC               CGCCG TAGC CGCCG                TTTTCGATGACGACG  62 92
JTM80_RS01810  428718 ..  428751 +  -8.1  -2.64794   AAGGCTTTCAGACTC     CGCAGGCGGCT-GCTA ATT TTGCTAGTCGCCTGGG     TACTCTAACCTTGGC  58 136
JTM80_RS01815  429613 ..  429626 +  -3.1  -3.58343   TCAAGCTCCTCTGCC               TTGCG CTGC TGCAA                TTTCAGACTAATAAC  49 69
JTM80_RS01825  430986 ..  431002 +  -6.6  -2.75521   TGATCTGCGGTTCGG              CGATTG CATCA CAATCG              GTTTGCGGGTGTCCT  53 171
JTM80_RS01830  432678 ..  432698 +  -3.9  -2.82015   TCCCAACAGGAGGAA            AGGCTAGCA CAT TGCTAGCAG            TCTAATCGCTATAGC  44 59
JTM80_RS01835  433185 ..  433211 + -15.2  -5.88197   AGCGTTCCCAATTGA         CGGGTTAACCTG GAA CGGGTTAGCCCG         TTTTTTTGTCTTTGC 100 49
JTM80_RS01845  434940 ..  434952 +  -3.3  -3.92373   ATGCTCAAGCGCTTG                GCAGC TTA GCTAC                TTTATAAATCAGCTC  54 17
JTM80_RS01850  435457 ..  435467 +  -3.2  -3.27525   TACGTCGGATGAAGC                 GTAG AGC CTGC                 TTAGGTTTAGAGCAA  46 22
JTM80_RS01870  439441 ..  439456 +  -4.6  -3.58343   CGAGCATCGTAGCGA              TCGCGG GCGG CGGCGA               TTTCGGGGTGATGCG  53 107
JTM80_RS01880  440683 ..  440700 +  -6.2  -3.72695   TGGAAGCGTTAGCAT             TGGCGC ATGACC GCGCCG              TTTCCTAAGCCCCCT  62 29
JTM80_RS01885  441930 ..  441940 +  -6.8  -2.53263   CGCGCTGTTTCGCCC                 GTCC AGC GGAC                 TGGGTTCCAGGTAGG  52 97
        guaA  444440 ..  444450 +  -3.2  -4.83615   GGTGACGCATATATC                 GGTG ACG CATC                 TTTTTGTGACGCATC  70 340
JTM80_RS01895  447683 ..  447702 +    -5  -3.25823   TCTGATATGATGTAA            TCGATCCA TATC TGGATCAA             TTACTGTCCACACAA  53 347
JTM80_RS01905  448397 ..  448413 +  -2.1  -4.09739   GACCGACAAAATCAC              CAGACGG CTG CCGTAGG              TTTTGACGACATTGG  56 448
JTM80_RS01915  449980 ..  450023 + -16.8  -3.56643   CTTAGGAGTGGGGGT TGGGGGTTTGGGTTGCAGGG GGAT CGCTGCATCCTAAACCCCTA TTTCAGAACTCTGAA 100 36
JTM80_RS01960  461556 ..  461600 + -15.9  -2.76583   CTTAGGACTGACACA GTTGGACAATTTCCTGCGGGC GCA GCCTGTAAGAAATTGTCCAAA GTTTAGACATCTTAT  88 154
JTM80_RS01965  462096 ..  462109 +  -5.2  -2.99471   AGGTAACTTAGGTAA               GGGC TTTCAC GCCC                TCTATCTCGCCCTCC  49 123
         map  463093 ..  463111 +  -9.5  -3.99324   ATAAACATAAAAAAA             GCCCTGG CATGA CCGGGGC             TTTCTCATAATCGAG  80 107
        psbN  463959 ..  463988 +  -8.7  -3.85698   TCTACGGCATTGGCA       TCTGCTAGCAGAT TGGC ATTTTCTAGCAGA        TTTGTGGGGACGGCG  72 431
JTM80_RS01990  469911 ..  469923 +  -4.7  -3.01712   CGCGGCCAAACAGGC                GGGCG TGT CACCC                TGTTCGCCCACCAGC  46 285
JTM80_RS02005  472025 ..  472043 + -13.2  -2.73635   CAAGATCCTCCTAAA             TCCCCCTT CAA AAGGGGGA             CTTTAAGGCGGTTTC  79 177
JTM80_RS02010  473439 ..  473454 +  -6.1  -2.51133   TGGATGGCAGCGCGA              TCGCC AATGGC GGCGA               GTTGGTCGGTCGATA  48 303
JTM80_RS02020  475224 ..  475249 +  -4.8  -3.03151   TGCGGATTGCAATCA        CGATGGCATCGC TGGG GCGA-GC-ATCG         ATTTCCTTTCGCACC  47 378
JTM80_RS02030  477103 ..  477158 +  -5.3  -5.23316   TTAATAGATAAATAT AAAACCCAAAGACCCTGCGCTGCTCG CTGCA CGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC  86 52
JTM80_RS02040  481412 ..  481432 +  -3.1  -3.76125   CTAGCCAGCCAAGCC            TCGGCGGTT TCC ATCCGGCGG            TTTCCCTTAAGATAA  52 37
JTM80_RS02045  482868 ..  482885 +  -9.1  -2.69964   TTTCTCCCAGACTGA             GTGCCCA AATT TGGGCGC              TAGTATGCTTCACGC  61 70
JTM80_RS02050 NONE
JTM80_RS02055  484730 ..  484742 +  -4.7  -3.63991   TTTCGGCAAAGCGCT                CCGCC GTG GGCTG                TTCTTGGAGATAGTC  56 333
JTM80_RS02070  489399 ..  489411 + -10.5  -2.71712   GCGCCGTCTTGGTTG                CCGCC TAG GGCGG                GTTTGCCGCAGGCGA  63 282
JTM80_RS02100  494494 ..  494505 +  -4.4  -2.91264   CCTAACAGCACCCTA                CAAG TCAA CTTG                 TCTATGGCTCCCAGC  47 92
        ligA  496895 ..  496911 +    -3  -4.56775   CACGCGGGCTGAGGG             TTG-GGC GATC GCCACAA              TTTTTGCCAGCACAT  69 183
JTM80_RS02115  498723 ..  498742 +  -4.4  -2.71269   GAATGCTCGGAAACC            CTGA-GTAA GGC TTACCTCAG            CTTAGTTTGCAGCTT  44 22
JTM80_RS02120 NONE
JTM80_RS02125  500771 ..  500808 +  -2.5  -4.07885   GGATCGAAGCCCATA   GCTCCTGAGTTGGAGCC GGAG GGCTTGGTCAGAGGAGC    TTTTGGGCCAGCGTC  55 77
JTM80_RS02130  501571 ..  501586 +    -4  -3.53091   GCTGGGGGTACATCA              GTAGGGA GCA TCCC-AC              TTTCGCGAAAACAGT  52 22
JTM80_RS02135  503145 ..  503157 +  -3.3  -4.16101   GGCGATCGCTCTTTG                GGGGC AGG GCTTC                TTTCTCTAGTATTTT  59 462
        msrA NONE
JTM80_RS02145  506106 ..  506122 +  -4.4  -3.73775   GAATAACCGTCTGCC              GTCTCA GGGCA TGAGGC              TTTACTAGAAATAAA  56 437
JTM80_RS02155  507037 ..  507060 +  -6.6  -3.89822   AAGCCTGATGATTCA          GCACCAAGGA AACA TCCGTGGAGC           TTTATAAAGTGGATC  67 232
JTM80_RS02160  508290 ..  508300 +    -4  -3.51307   TCTAGGACTTACACA                 CTTA CGA TAAG                 CTTTTTGGATTTTGG  52 89
JTM80_RS02165  508975 ..  509005 +  -3.9  -4.42851   AGGAATTTAGCAAAA       AGAGGGAGATGAA GGCAA TCCATCTCCCCCC       TTTTGAATTTGTTGA  64 94
        hisD  522436 ..  522448 +  -4.7  -4.25104   CGATTATCCCATTAG                TCCCG AAG CGGGC                TTTTAATGCCACGGG  63 7
JTM80_RS02210  524959 ..  524976 +    -2   -3.3676   GCTTCGCTTCGGCTC             G-CTGAG CAAAT CTCAGGC             TTGTGGGATATTCCA  46 467
JTM80_RS02220  526110 ..  526120 +  -3.2  -3.02202   GGTAGGGATTTAGTT                 TAGC GAG GCTG                 GTTTCTGTGGCGATC  42 169
JTM80_RS02225  528900 ..  528937 +  -2.2  -4.08394   ATGGGGTTTAAATAC  GTTTCATC-GAGAT-TCT CGCG AGATATCCCAGATGAAGC   TTTTACACCCGATGT  55 129
JTM80_RS02230 NONE
JTM80_RS02235  532428 ..  532451 +  -3.8  -2.57944   AACAGAGCGCCCAAA          CTGGGGACTG GGCG TAGTCGCTAG           CTTAGTCTGCTGCTA  43 109
        pheA  534778 ..  534800 +  -2.6   -3.6682   GCAAAAGCTGATCTA           CCTCAATGCT AAG AGAGTGGAGG           TTTCGCTCGGTGGGA  51 463
JTM80_RS02265  537655 ..  537681 +   -21  -3.02144   TACGCAGTTGGAAGA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TCTTCCAAACCCTAG 100 76
JTM80_RS02275  548524 ..  548538 +  -2.7  -4.08767   CCGCCAAAAACAGGG               CGCTG TCCGT CTGCG               TTTTGCAGGAATAAG  56 224
JTM80_RS02285  552315 ..  552345 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
        egtB  555241 ..  555260 +  -2.8  -3.27648   ATTCGTTTGGCAGTG            TAGTCTGG TGTC CTAGACGA             GTTCTTTTTCAATTC  46 23
        egtD  556347 ..  556377 +  -8.2   -3.7511   GTGGTTGGGATGGGT       GGGTGCGGATGC AGGAGGG GCGATCGCACCC       TTCTCTTCTGCGCCC  66 47
JTM80_RS02320  560781 ..  560799 + -13.2  -3.54543   GACCCACTTCGGAAG             TCCCCCTT ATT AAGGGGGA             TTTAGGGGGATCGAT  86 128
JTM80_RS02325  563528 ..  563548 +  -7.5  -2.60032   CGTCGTGTCTACGCC            CATGCCCTG GGT CAGCGCGTG            AATTTTTGCGGGCAG  50 462
JTM80_RS02340  566526 ..  566551 +  -3.2  -3.61398   GCAGGCAGTCGCGCA         GGTCGAGGGA TTGAAC TTCGTCGGCC          TTGTTGCCCGGAAAC  49 193
JTM80_RS02350  569606 ..  569620 +    -7  -3.73072   CTTCTCGCGAGTGTG               GGCTGC GCC GCCGCC               TTTGATCAGCACCTT  63 471
JTM80_RS02375  573572 ..  573587 +  -4.6  -3.02144   GGGGTAAGTGGGGAT              GGCGTA TCAG TCCGCC               TGTTGGGAAGAATGA  47 34
JTM80_RS02380  575063 ..  575076 +  -5.3  -3.47349   TTTTCCCTGCCACCT               GAGTT TATG AACTC                TTGTAACTTTAAGGG  54 110
JTM80_RS02385 NONE
JTM80_RS02390  576962 ..  576980 +  -3.9  -5.16841   ACGAAGAGAGAAGAA             CGAAGAA GTTTG TTTTTCG             TTTTTGTTAGTGTCC  78 66
JTM80_RS02400  581580 ..  581608 +  -2.3  -2.91144   CAGTAAGCTTGCTGT        CTCAAGCTATGCC AGT GCCTTAACTTGGG        TCATTTGGGGACTGC  41 205
JTM80_RS02415  584530 ..  584541 +  -7.2  -3.15579   GTCGTGAGTCTGTCC                GGCG GATG CGCC                 TTCATCAGGGATTGA  59 231
JTM80_RS02420  585994 ..  586020 +  -5.8  -3.90048   CAATGCTGCCTCGCT         TCCGAGCCTCCT TGT AAGAGGTTCCGA         TATTTTTCAGCCCAG  64 152
        mnmG  592790 ..  592815 +  -3.9  -3.55889   TCCAACACTCTGTCA         CGCAGCGTTCAC CCT GTCA-CGCAGCG         TTCTGGTTAATGTGT  52 110
JTM80_RS02450 NONE
JTM80_RS02455  593984 ..  594021 + -21.5  -2.96395   TATCCCTAAGTAGGA   CGTGGTATTGCAGGGCA GCGC TGCCCTGCAATACCACC    TGTGTCCTAATACCT 100 32
JTM80_RS02460  595755 ..  595769 +  -5.6  -3.54459   CAAAAAAAAGCACCC               CGGAGG GTG CCTCGG               TTTCGCCACAGTTGC  56 158
JTM80_RS02485  602821 ..  602852 +  -3.6  -3.79113   TGGTTTACGAGGTCG      GCGGTGCTGTTCAGG CAG CC-GATTCGCATCGC      TTCTTCTAGGGCGCT  57 430
JTM80_RS02500  605584 ..  605615 +    -3  -3.72765   TTGCGCTTCAAAATC      CAGGGATG-GTGTTA ATC TGATGCTCAGCCCTG      TTTGCGGTTTGAGTT  52 269
JTM80_RS02505 NONE
JTM80_RS02510 NONE
JTM80_RS02515  610636 ..  610646 +  -2.4  -3.96148   ACTCCTCTCCCAGAC                 ACCG CAG CGGA                 TTTGTACTCAGCGCC  56 237
JTM80_RS02530  615435 ..  615451 + -10.1   -2.9953   CCTCCCCCCCGTTGC              GCCCTGT CCG ACGGGGC              TGTAGTTGTCGTTGC  64 214
JTM80_RS02540  619402 ..  619412 +  -4.6  -3.53811   GAGTCCGCTGAGGTC                 GCGG GGG CTGC                 TTTCCGACGGGTCGC  53 290
JTM80_RS02550 NONE
JTM80_RS02555  623236 ..  623262 +  -9.4  -3.65522   TTGGGTTTTGGACAA         TTTCTCGCGGGC GCA GCTCGCAAGAGA         TTGTTCGACTGCGTA  73 495
JTM80_RS02565  624885 ..  624905 +  -2.6  -3.96327   GGCAAGGCGTAGCCC           CCAGTTCTG ATGC CAGA-TTGG            TTTCTGATGCCAGAT  56 507
JTM80_RS02585  626093 ..  626105 +  -3.3  -4.07568   AAAAGGGCGTTTCTG                TGGCG ATG CGCTG                TTTTAGGGCGGGCAG  58 349
JTM80_RS02605  630319 ..  630361 +  -7.2  -4.46656   TCCAGAGATCACTCA GAGGATGAATCGGTTT CTTTGGCTTGC AGATCGGTTCATCCTC TTTTCCTATTCTGAG  79 215
JTM80_RS02610 NONE
JTM80_RS02615 NONE
JTM80_RS02620  633668 ..  633698 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS02625  635314 ..  635329 +  -3.3  -4.51777   CTGCTGCTGAAATCG              CTCAA TTAGTC TTGAG               TTTTGCTTCTCCTCT  66 400
JTM80_RS02635  637115 ..  637133 +  -5.8  -3.45032   GATGGCGACGGCGTT             GGCAGAGC GCT GCACGGCC             TTGTACGTATTGTTG  53 228
JTM80_RS02645  640308 ..  640322 +  -5.6  -4.51196   CGATCAGCGCTGGCT               TCTCGG TTT CCGTGA               TTTTCTCAATTTCAC  71 333
JTM80_RS02650 NONE
JTM80_RS02655  641659 ..  641682 +  -5.3  -3.65671   TATCTAATAACTTTC          GTACTCATG CGTACT CATGCGTAC           TTATGTGTACTTATG  59 116
JTM80_RS02660  642487 ..  642500 +  -4.5  -4.16016   AACAGTTGCACCTGA               TTGCC CCCA GGCAG                TTTATTCAGCCGTCC  64 366
JTM80_RS02685 NONE
JTM80_RS02690  651364 ..  651390 + -22.4  -3.50393   TACGCAGTTGGACAA         CTTCTCGCGGGC GCA GCCCGCGAGAAG         TTGTCTAAAATCCAG 100 116
JTM80_RS02705  654004 ..  654017 +  -3.7    -3.322   TGACTGTCTTAGTTT               CCGGC GATC GCCAG                TTCCTCTCTCAGCAT  48 120
JTM80_RS02735  659476 ..  659495 +  -3.4  -3.60296   GAGAACTATTTTTGT            CCTGAAGG TTGT CCAGCAGG             TTTGGGGTGGGCGTG  49 21
JTM80_RS02740  660581 ..  660606 +  -3.3  -3.85698   CCTCTGGCTCTCGCT         CTGTCCGAATCC ACT GGGTTT-GACGG         TTTGTGAAGAAGCCG  55 187
JTM80_RS02760  666188 ..  666201 +  -5.3   -3.9941   AAGCTTGGTGCGTCA               GGTAT ATAA ATACC                TTTGCTTATGGGACG  63 297
JTM80_RS02765  667532 ..  667549 +  -4.1  -3.01416   ACTCGCTGCCTTAGC             CTGTTGC GAGG GCAACAC              TATCTCTGGCTACTG  45 99
JTM80_RS02770 NONE
JTM80_RS02775 NONE
JTM80_RS02780  671670 ..  671685 +  -3.2  -2.62463   ATGCAGCAAAGTAAG              TTGCAC AAAA GCGCAA               GTTCTAAATCCTAAA  40 77
JTM80_RS02785  672500 ..  672527 +  -7.6  -3.60098   CCGGGCTGCCAGGAA        CGGCTCTGGGGC AATG GCTCTGGGGTCG         TTTCGGGTAGCGGCT  62 152
JTM80_RS02795  678418 ..  678437 +  -3.6  -3.55447   CAGATTAAACCCAGG            TTGATTCA CGAT TGGATCGA             TTGTCTCATCCCTGC  52 66
JTM80_RS02800 NONE
JTM80_RS02805  681263 ..  681273 +  -2.4  -4.36914   TTGAACGGAATTCTG                 CTGC CTT GCTG                 TTTTCTGCAAGGGGG  60 62
JTM80_RS02810  682701 ..  682711 +  -4.6   -4.4078   CGTCCATGATGATCA                 GCGG TAG CTGC                 TTTTGCTTGAGCAGG  67 363
JTM80_RS02830  686560 ..  686598 +  -3.2  -2.71712   GCCATTCAGGTCGGG  CTGG-AGCGGCGTATGCA GCAAA TGCGT-CGCCACTGTCAG  GTTTGCAGGCAGCAG  41 408
JTM80_RS02845  690728 ..  690740 +  -6.9  -3.36968   AATCCAGGGATTGAA                TGGGC GTT GCCCG                TTGTGCGGTTGGGTC  60 27
JTM80_RS02850 NONE
JTM80_RS02855  692196 ..  692229 + -11.8  -3.74077   CGCGATCCCCGCAAT     CGTCCGCGCC-AC TTCTCGACC GTCGGCGCGGACG     TTTCCGTGTCTACAC  85 116
JTM80_RS02860  693372 ..  693390 +  -2.3  -4.57341   CCCTGAAATGGTGAG             GCAGCTT CGTGA AGGCGGC             TTTTTCCCACAAGTT  62 141
JTM80_RS02865  694190 ..  694207 +  -5.5  -2.89793   TGGGCTGACCAGCTT             TGGGATG GTTC CAACCCA              TGCTTCTCTGACTGG  49 112
        rodA  695839 ..  695857 +  -3.8  -3.86897   CAATGGCGGGCTGGG             GCGGGGTT GAG AATTCTGC             TTTGTGCGCGATCCA  57 308
JTM80_RS02890 NONE
JTM80_RS02895  698549 ..  698559 +  -3.2  -4.25104   GAAACTCGACACAGC                 GTTC GTC GAGC                 TTTTGCTGAGCCACA  60 504
JTM80_RS02915  703867 ..  703893 + -15.2  -3.30771   TACACAGTTGGACAA         TTTCTCGCTGGC TGC GCCCGCGAGAAA         TTGTCCAAAATCTAG  90 53
JTM80_RS02940  708771 ..  708781 +  -2.4  -2.87014   AGGCAACCTGGGGAT                 ACCC AGT GGGC                 TGCTTCTAGTGAATT  41 51
JTM80_RS02945 NONE
JTM80_RS02955  712686 ..  712704 + -13.2  -4.09511   AAACTGGATCGAAAA             TCCCCCTT ATT AAGGGGGA             TTTTAGGGGGATCTT  93 372
JTM80_RS02960 NONE
JTM80_RS02965  714689 ..  714702 +  -5.9  -3.64371   CTCTTATCCGTGTCG               CCCTC TTTT GGGGG                TTTAGAGTCTGGCTT  59 58
JTM80_RS02970  715887 ..  715901 +    -5  -3.85698   CTTGCGATAAGCTTT               TTGGAT TTT GTCCAA               TTTCTCGCGGCGCAG  61 232
JTM80_RS02980  718596 ..  718630 +  -4.3  -4.42619   CTGTCCAGACGATCC    GGGCG-GTTTGTC-GTT TGA GGCTGACAATCTCGCCC    TTTTCTAAAATGTTG  68 363
JTM80_RS03015  728459 ..  728487 +  -3.8  -2.71712   AACTGCGCCGAACGA        CGAGTGCCCA GGCGCACGA TGGGCGATCG        CTTTCCGGCGGCGGC  43 292
JTM80_RS03030  731120 ..  731144 +  -7.1  -3.59979   AAGAAAGGCTTGAAG          TCTCTCTCCCG CTC TGGGAGAAGGA          TTTAGGGTGAGGGGG  62 195
JTM80_RS03035  732251 ..  732269 +  -5.2  -4.72272   CACGAAGGACACATC             GGGCGATC GCC GATTGCCG             TTTTTCATCGCAAAG  79 335
JTM80_RS03050  734764 ..  734794 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
        crtD  737694 ..  737748 +  -7.3  -3.81879   ATGAAGAACGAAAAA TGAAAAATGAAGAACGAAAAACGAA CCCTC TTCGCTCTTCGTTCTTCGCTCTTCG TTCTTCCCTTTTCCC  69 37
         ndk  741066 ..  741089 +  -8.8  -3.40597   TCCCATGCAAAAGGG          GGTTTGGGGG ATAT CCCCCAAGGC           TGTTTGGCTCGCCAG  69 399
JTM80_RS03085 NONE
JTM80_RS03090 NONE
JTM80_RS03095  745801 ..  745821 +  -2.3  -3.33162   CAGGCACACGCCCAG            CAGCGGCAG TTC CGGCCCCAG            TTCTGCAATCACCTG  46 341
        cobO  753277 ..  753290 +  -6.7  -2.50545   GAATTCCTAATTTTT               GTAGC AAAA GCTAC                CGTTTGTTGTGGGCG  52 64
JTM80_RS03145  753703 ..  753735 + -14.3  -5.48787   GGCAGATTACATAAA     TGGCGATCGCCTCT ATCCCC AG-GGCGATCGCCA      TTTTTTGTGTCTTAT 100 209
JTM80_RS03150  754779 ..  754798 +  -4.2  -3.61178   CCAGGAACCTACAGT            CCAGTGGCG TTT CACC-CTGG            TTTCCCCTGCCTAAC  54 323
JTM80_RS03155  755925 ..  755938 +  -3.8  -3.21934   TCAGCCCCCGCTCGC               TCCG CTATGC CGGA                CTTTTATCCGCCCAA  48 94
JTM80_RS03160  757134 ..  757154 +  -2.5  -3.13403   CTAGATCCAGCAATC            CTAATCGCT CCA AGCCCTTAG            TCTTCCTAAAGAGGG  42 50
JTM80_RS03165  759870 ..  759881 +  -7.2  -3.04144   TCTCCAAAAACTGCT                GCGC CCGG GCGC                 TCTTGGGCGTAGAGA  54 162
JTM80_RS03185  763552 ..  763562 +  -6.8  -2.53911   TTCGGGTGGCGCGAT                 TCCC GCA GGGA                 TCGCTTCGCGATTCG  50 390
JTM80_RS03205 NONE
JTM80_RS03210 NONE
        ruvX NONE
JTM80_RS03220 NONE
        mltG  770840 ..  770852 +  -6.3  -2.76969   TCCAACGGCACCAGA                TCTAC CAG GTAGA                ATTTAGGCTGGGTTG  51 106
JTM80_RS03230  771784 ..  771809 +  -4.6  -6.07374   CCAACACAGCGAACC         CGGCCAGCCT GCTTTA GGGCTGGCTA          TTTTTTGTTTTTTAT 100 271
JTM80_RS03260  778439 ..  778458 +  -6.4  -3.67792   CAGCCCAAGTCGGGG            GCGGCTGCT TCT AG-GGCCGC            TTTGGCTGCATCTAC  61 305
JTM80_RS03275  782730 ..  782742 +  -3.4  -4.08974   TGGCAGCAAAGCGTC                TCGA TGTTT TCGA                TTTATATCCTCACCT  56 46
JTM80_RS03280 NONE
JTM80_RS03285 NONE
        nusB  785786 ..  785797 +  -3.6  -3.80573   TGCAGCGGCTCCAGG                CGCT CTTG GGCG                 TTTGCTCCTGATCCA  54 227
        ftsY  787456 ..  787470 +  -2.1  -2.62263   TCATGCTTTAGCCTC               GGCTA TGGGC TAGTC               TAATCTCCCCCCAAT  39 76
JTM80_RS03300  788288 ..  788301 +  -2.3  -4.25104   GCTCCTTTACAAATT               AGCTC TAAG GAGCC                TTTTGGTCCCCCCGA  57 238
JTM80_RS03305 NONE
JTM80_RS03310  790646 ..  790663 +  -4.9  -3.54424   AACCGCTCCGGCAGC             TC-CCCTT TTT AAGGGAGA             TTTAGGAGGATCGAC  54 275
JTM80_RS03335  795635 ..  795645 +  -6.8  -3.41222   CAAAAGGGTTCTGGG                 GCAC TCA GTGC                 TGTTTCAGGTTCCCC  60 136
JTM80_RS03340  796267 ..  796303 +  -3.6  -4.66833   AAGACCCCAGCGCGT   GGG-GTTCG-GCCGCCCA AAT TGCGCGGAGCGATCGCCC   TTTTTGCACTTCAGC  70 385
JTM80_RS03355  801779 ..  801797 + -10.2  -3.96068   CACTCCTTGGAATTA             CTGCCCTC AAA GGGGGCGG             TTATTCTTCGCATGG  82 120
JTM80_RS03360  803052 ..  803069 +  -4.1  -4.16351   CGCCTAACCCTGTTT             TTGAGCG ATCG CTCTCAA              TATTTTTTCCACTAT  61 34
JTM80_RS03365 NONE
JTM80_RS03370  804977 ..  805005 + -10.2   -3.6003   AAAGTCCTATGCAAA        GCCCAGCCAAGA GCGAA TCGAGGCTGGGC        TTTGGAAATGGTTTA  77 124
JTM80_RS03400 NONE
JTM80_RS03405  815414 ..  815436 +  -3.3  -4.43844   GCTGCATCGACTGCA           CCTGGTCGG AAATC CCCAGCAGG           TTTTGTACATGGTGC  64 414
JTM80_RS03420 NONE
        rsmH  818567 ..  818591 +  -4.3  -4.00532   TAGCTAACTGGCCAG          CCTAATTGC AGGCAAG GCAATTCGG          TTTGGTATTTCGAGA  61 103
JTM80_RS03430  819790 ..  819842 + -17.7  -2.85351   TGCATAAATGCTTTT CTGAGAGCGTGAATCGTTGGGCGGC ACC GCTGCCCAACGATTCACGCAAGAGG TCTAATATAAGAACA 100 235
JTM80_RS03445 NONE
JTM80_RS03460  826243 ..  826264 +  -5.8  -2.79302   GGTTCAGCGCTAGAC           CTGACGCT GGATCG AGCGCCAG            TCTAGTGCAACTCCT  51 104
JTM80_RS03470  829390 ..  829401 +  -2.2  -3.68261   GTCCCTCTCTCTCTG                TCTC TCTA GGGA                 TTTCAGGTGTTGTGA  50 75
JTM80_RS03475  830397 ..  830423 +  -7.2  -3.30124   TACGCAATTGGACAA         TGTCTCGCGGGC GCA GCCCAGGAGATA         TTGTCCAAAATCCAA  61 52
JTM80_RS03480  831778 ..  831796 + -10.2  -2.51464   ATGTCTGTTGCCTGA             CCCTGGGC ACC GCCGAGGG             GTTGGTGAATCATAA  62 429
JTM80_RS03495  834004 ..  834030 + -10.1  -4.49756   ATTTTGAAACGAAAA         GACCTGCTGGC AAGGC GCTGGCGGGTC         TTTTCATGTTTGGGC  90 99
JTM80_RS03500  835866 ..  835902 + -12.4  -4.93595   CATGGCTTTGTCAGT    CCCCGATGCTGCTT CTCAGAATT AAGCAGTGTCGGGG    TTTTTGCATTTTTGT 100 85
JTM80_RS03505  837896 ..  837922 + -12.2  -5.13648   GGGTTCGGACTCTGA         GGGGGAGTGGCG ATT CTCCGCTTCCCC         TTTTATTTATATTTA 100 56
JTM80_RS03540  845244 ..  845277 +  -9.6  -4.62069   CGTTTACTTCAAAAG     CTCCCCGCCCAA ACTGCAAACC TTGAGCGGGGAG      TTTTTAGAATCAGCA 100 253
        hemJ  846154 ..  846170 +  -5.1  -3.86015   CTTGCTCTAAGACAT              TTTGCTC TAA GAGCTAA              TTTATGAAGCAAATC  61 63
JTM80_RS03555  848680 ..  848696 +  -2.1  -4.82901   GCCTTGTCCCAAACC              GGGGCTG ATT CAGGCAC              TTTTTCTGAGGCGGC  68 163
JTM80_RS03560  849770 ..  849786 +  -3.6  -4.42464   TGACTCGTTGCCAGC              GGGCGA ACCCG TCACCC              TTTATTTCAGACCTT  64 129
         ggt  851383 ..  851397 +  -2.8  -4.32607   GAGATCTTCGGATTC               CTTTAG ATT CTCAAG               TTTCTTAGATTTTCA  61 40
JTM80_RS03575  853083 ..  853099 +  -5.1  -3.81146   CTTCGCGATCCCTCT              TCGCG ATTATTC CGCGA              TTATTCATTGAGGGC  61 63
JTM80_RS03580  854478 ..  854496 + -13.2  -2.60688   CCCTTATTAAGTAAA             TCCCCCTT ATT AAGGGGGA             CTTCTGGAGTGGTTC  78 225
JTM80_RS03585  856319 ..  856336 +  -5.6  -3.68325   ATGGTCGCATCTTCT             CGAAAC TGCTGC GTTTCG              TTGTATTCCGCTATG  58 518
JTM80_RS03615  861724 ..  861762 + -11.7  -4.98436   TTTAAGGCTGAGCAT   CTGCCCCCTTTAGTCCT CCTTA GGGGCGAAAGGGGGGAG   TTTTTATCGTGTTCC 100 182
JTM80_RS03630  866839 ..  866855 +  -2.2  -3.59979   GCGTTGGGGCTGAGG              GGCGAT CGCGT GTTGCC              TTTGGCATCGGCGGG  47 403
JTM80_RS03650 NONE
JTM80_RS03655  872634 ..  872650 +  -2.1  -3.54424   AGCGGAAGCCGCTAT              CCGCGCA TCA TCCGCAG              TTTGCCAAGCTCCCA  47 45
JTM80_RS03675  878929 ..  878974 +  -4.6  -4.18094   TTCCACGATCTGATC GCCGC-GCTTGCCGTCAATGGG ATAG CCC-TTGCCTGCCAGCCGCAGC TTTTGCCCTGCTTTC  64 159
JTM80_RS03690  885344 ..  885383 + -17.3  -2.67705   GCGCGGGGGAGCAGC  GGCGATCG-CGCTGTGGG CAGCC TCTACAGCGGCGATCGCC  TGCTCTAGGTTATCC  87 282
JTM80_RS03705  889281 ..  889294 +  -4.5    -3.695   GAGTGCGTCTGTACT               GCTAG GGCG CTGGC                TTTGGCGTGTTTGGC  56 93
JTM80_RS03710 NONE
JTM80_RS03715 NONE
        recJ  893547 ..  893573 +  -3.9  -4.36914   TATCCTAAAAAGGAT        TCAGCTTAAG-CG ACT CGACTTAAG-TGA        TTTTATCGGAGCAAC  64 305
JTM80_RS03725  894319 ..  894339 +  -3.9   -2.9914   CCAGCTTGCCCGACA            TTTCGTAGG TGT CCTGCGCGA            TCTATGTCCCGACTG  45 18
        scpB  894919 ..  894931 +  -6.9  -3.85698   AGAGCTTCCCGGCCT                GCGGT AGA GCCGC                TTTATACAACCAGGC  67 83
JTM80_RS03735  895738 ..  895772 + -17.2  -4.07568   CTAATCGATTGACCA     TCGGCTGTGGGCGTAG TGA TTATGCCCGCGGCCGA     TTTTAGGGCAGAGGG 100 88
        larC  899369 ..  899381 +  -2.7  -3.65827   AATGTAGAACTCAAC                CAGAA TGG TTTTG                TTTGGGTCGAGATTA  51 278
JTM80_RS03755  901199 ..  901216 +  -4.1   -3.8572   GGCTCCACAGTCTTG             GTGGTCG ATAA TGACTAC              TTTGCTGATGTTATG  57 230
JTM80_RS03770  904589 ..  904601 +  -9.1  -3.35679   CAAGAACGGTCGATC                CGCTG CAA CAGCG                TTGTCAGTGGGAGCA  69 117
JTM80_RS03775 NONE
JTM80_RS03780 NONE
JTM80_RS03785  907070 ..  907116 +  -4.3   -3.5394   TTTTTGACCATCGGA TAGCAGGGACGAGG-AGTTGGC TTGT GCCCCTTGCCTCGTCCTGGCGA TTTACCACGAGGTTT  54 202
JTM80_RS03800 NONE
JTM80_RS03805  910512 ..  910531 + -12.2  -3.54424   GGGGAAAGCCGGAAG            TCCCCCTT GCTT AAGGGGGA             TTTAGGGGGATCGGC  82 384
JTM80_RS03810  913883 ..  913893 +  -2.4  -3.28712   CTCTAGTGCTGCGAT                 CGCC CTG GGCA                 TTCTGAGAACAGGCG  44 165
JTM80_RS03815 NONE
JTM80_RS03820  917586 ..  917607 +  -7.3  -3.05022   ACTTTTTGAGCGTTT           CCTGGATTG ATTG CAATCCAGA            TGTCTATGTCGGCGG  54 352
JTM80_RS03845  921918 ..  921954 + -13.8  -4.48175   AGGATACAAACGAAA   GGGCGATCGCCATTTCC GCAT GGAAGC-GCGATCGCCC    TTTTGATTAGGTTTT 100 63
JTM80_RS03855  925955 ..  925971 +  -7.3  -3.60805   GTAGGTTCTGAGTGA              GTCAATC TTG GGTTGAC              TTTGGGCTGACCTGT  64 215
JTM80_RS03860  927469 ..  927482 +  -4.5  -3.46068   CCACTGCCGACCACT               GCAGGG CTT CCC-GC               TATTTCAGTTAGAGC  52 214
JTM80_RS03865 NONE
JTM80_RS03870 NONE
JTM80_RS03875  929469 ..  929480 +  -4.4   -2.7263   GGTTCTCAGCAATTC                TGCT TCTC AGCA                 ATTTCGGCAAGTCAT  45 116
JTM80_RS03880  930016 ..  930030 +  -2.7  -2.81464   AAACCCGCGTCAAGC               GCCTG ATTCC CTGGC               TCTACTAGCTCCTGC  41 3
JTM80_RS03885  930534 ..  930561 +  -8.6  -4.28774   AGTGTGATTTGCAAA        GGTATGTAGT-AC TGA GTGACTGCATACC        TTTTCGCTTAGATAC  79 39
JTM80_RS03890 NONE
JTM80_RS03895 NONE
JTM80_RS03900  933369 ..  933383 +  -5.7  -3.57561   TCCGCCTAGTGTAAG               CTTGG CCAGT CCAAG               TTTGCAGACTTCCAG  59 27
JTM80_RS03905  934121 ..  934135 +  -5.7  -2.71712   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 74
JTM80_RS03925  938996 ..  939017 +  -4.3  -4.82333   GTTAGGATTTATTTG           CAGTGGCGT TTTC GCGCTACCG            TTTTTGCGTTATTCT  74 49
JTM80_RS03930  939625 ..  939642 +  -4.7  -3.57792   CGCCGCTGTCGCCAT             TGAGGGC GATC GCCCCCG              TTTCCCCCTGGATCG  53 277
JTM80_RS03940 NONE
JTM80_RS03945  943197 ..  943244 +  -8.4  -3.14132   CGGGCATTTTGGTTG CGGAGTTGCTGCACTTCGGC CTTGAGTT GCTGGAGTTCGGTGGCTCCG TTGGTCCCAACGGCG  60 225
        metH  947826 ..  947840 +  -5.7  -3.63627   GTGACGGGGAGAGAG               CGTTC CTCTC GAACG               TTTGCACTGTAAAGA  59 71
JTM80_RS03960  948285 ..  948343 + -21.9  -2.85621   TTTGGCACAGAGCCA TAATGCCTCTGCGGCGGGGTG-CTGG ACTGGCTG CCAGACTTCCCGCCGCAGGGGCATTG GTTTGCGTTCAGATT 100 91
JTM80_RS03975 NONE
JTM80_RS03980 NONE
JTM80_RS03985  956213 ..  956231 +  -4.4  -2.77523   CCAAACCCTGACGAG             GGTGGGGG TAG CAGCCACC             TGGTCTTGCTCGGCC  44 198
JTM80_RS04010  962007 ..  962026 +   -10  -4.35926   AAATATAAGCCAAAA            GGTCTGCT CTTG GGCAGACC             TTTTCAATTTCAAGT  87 62
JTM80_RS04020  963340 ..  963360 +  -5.5  -3.11272   GGCTAACCTTATTTT            TTGGCTAAA TTT TTTGGCTAA            TATTGACTGATGCTC  51 35
         pds NONE
JTM80_RS04030  966001 ..  966014 +  -4.5  -4.18197   AAGCCTGAAAAGCCC               CGGTT GAAT AGCCG                TTTTGCCTGACCCGT  63 61
JTM80_RS04035  967424 ..  967446 +  -2.7  -4.36914   GGTGTGCTGCACCTG          TTCGGCGATC GCCC GCT-GCCGAA           TTTTCTCCAAAAACG  62 373
JTM80_RS04055  971603 ..  971615 +  -3.3  -4.08767   GAGAGGGTGGGATTC                GAACC CAC GGTCC                TTTTGGGACACTCGA  56 111
JTM80_RS04065  972174 ..  972197 +   -11  -5.45802   TCCGAAGCGACATAA          CACCTGGCAG GGGG CTGCTGGGTG           TTTTTCTTTTGGAAC 100 92
JTM80_RS04075  975491 ..  975505 +  -7.2  -2.89564   TTAGCGGATTAAGCG               GGTTAA GGA TTAACC               TGTCTAGCCTAGAAC  57 29
JTM80_RS04090  978394 ..  978406 +  -3.3  -2.73364   GAGGGTTCGCAGCGT                TGCCG CAG CCGCA                TAGTTGCGCTGGGAG  41 271
JTM80_RS04125  985454 ..  985475 +  -2.8   -4.0896   TTGTCGTAAAGCAAA           GCCTAGCC TGGGGT GGCGTGGC            TTTTCCAGCGGCTTT  56 32
JTM80_RS04130  985890 ..  985904 +  -3.5  -3.02043   TCTGGGAAAGACAGC              GG-GGC GATC GCCTCC               TGTTCCGACAAAATT  43 126
         fba  987864 ..  987890 +  -6.4  -4.84527   ATCGCTCTCCAATCA         GCCACTCCTTCG CAT TGCAGGGGCGGC         TTTTTGATATCTGCA  82 107
JTM80_RS04150  989211 ..  989223 +  -4.7  -3.14564   GATGCAGAGCAGGTC                GCCCG TGT CGAGC                TTGATGCCGCGATAG  47 333
JTM80_RS04190  998068 ..  998081 +  -6.7  -3.80733   TGGCTGGCTTGCCGT               TTGCG ATCG CGCAA                TTCTTGTAGGCTGAG  64 224
JTM80_RS04210 1002546 .. 1002572 + -11.6  -3.28712   GACGCAGTGGGACAA         TTTCTCGCGGGC TGC GCCTGAGAGAAA         TTGTCCAAAACCCAG  76 71
JTM80_RS04225 1005964 .. 1006015 +    -8  -3.90328   GTTTTAGGGTCAGCC CCCCAGTTTGTAGTGAGCGCTTTG GCGC TAAAGCACTCGCTACAAGCCGCAG TTTCTGCGGATTCTG  72 72
JTM80_RS04230 1008062 .. 1008075 +  -3.7  -4.20531   TGGTTGGTTGCATAG               AGGGC GATC GCCCC                TTTTCGGTCACTCTG  62 483
JTM80_RS04240 NONE
JTM80_RS04245 1009628 .. 1009640 +  -3.3   -3.8647   CAGCTTGGGAAACGC                CAGAG ATG CCCTG                TTTGATCTGATGGAT  54 159
JTM80_RS04255 NONE
JTM80_RS04260 1015179 .. 1015208 + -14.3  -5.31877   TACAGAAACCCATCG       GCGCTGTTTCGAG TTTG CTCGCAGCAGCGC        TTTTTTATGCTCAGT 100 117
JTM80_RS04265 1017419 .. 1017435 +  -6.6  -3.82084   TATGGCAAAATCAGA              CAGGAA GCCGA TTCCTG              TTGTTGCTCTTGCAG  67 133
JTM80_RS04270 NONE
JTM80_RS04275 NONE
JTM80_RS04280 1020434 .. 1020449 +  -6.1  -2.71322   TTCTCGTCGTAGGTG              TCGCC CAGGGC GGCGA               TAGTGTCTCGGTTGC  49 297
JTM80_RS04305 1028537 .. 1028584 + -16.3  -5.00027   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCG GTGCG CGGGCAGCGCAGGGTCTTTGGG TTTTATATTTTTAAT 100 379
JTM80_RS04310 1030089 .. 1030103 +  -8.6  -3.12351   CGATTTGGGAACGGT               TCAGGA ACA TCCTGA               TTAGATCTGACCGGG  62 97
JTM80_RS04315 NONE
        cbiM NONE
        cbiQ 1032441 .. 1032455 +  -4.2  -3.14404   CAACTCACCCATCTC               CTATCG TTT CGCTAG               TTCGCTGCTTCATAT  48 11
JTM80_RS04330 1033492 .. 1033539 + -26.4  -4.61747   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCGC CGC GCGGGCGGCGCAGGGTCTTTGGG TTTTATACTTATTAA 100 233
JTM80_RS04345 1036754 .. 1036772 + -13.2  -3.55548   GAAACCGCCTTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCTTG  86 147
JTM80_RS04360 1039586 .. 1039616 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS04380 1048582 .. 1048609 +  -9.8  -5.63857   TCAAAGGATCGGCAG        GTGGGGTTGGTC AACA GACCAGTCCCCC         TTTTTTTGCCTTTTT 100 357
        crtH 1051104 .. 1051134 +    -3  -2.76696   GCGGTTTTGGGTCCA       TGCCGCTGGAGGCG CTC CACTGCCAGCCGCC       GTTGTTCGCCGCCAG  41 331
JTM80_RS04400 1053430 .. 1053442 +  -4.8  -3.09327   TGGATCGCCTGGTTC                GCCA GATTG TGGC                TATTGGGTAGGCTGC  48 3
JTM80_RS04405 NONE
JTM80_RS04410 1055008 .. 1055021 +  -3.8  -2.87564   TAGGGCTGGATGTAG               GGCT GGAATA AGCC                TGTATGGAAGCCTGG  45 38
JTM80_RS04415 1056138 .. 1056156 +  -2.4  -2.74415   GTTGCCCAGGTGATC             GGTTAGTC ATC GGTTAATC             ATTGGTTTAATGCTG  39 20
JTM80_RS04420 NONE
JTM80_RS04425 NONE
JTM80_RS04430 1058499 .. 1058511 +  -4.1  -3.15458   GCAGCGATACTCGGC                GCTAT GCT ATGGC                TATGGTTTCTTCTTT  46 80
JTM80_RS04435 1062589 .. 1062601 +  -5.5  -4.21936   GATGAGGTAGTCGAT                GCAGT CCT GCTGC                TTTTGGGATTCTAGG  66 466
JTM80_RS04450 1066448 .. 1066460 +  -4.9  -4.11216   TCGCCTCAAAGAACT                TTTCA CAC TGAAA                TTTTCACACTGAACC  61 304
JTM80_RS04480 1072376 .. 1072389 +  -3.9  -2.84504   CAAAAGCCTTCTAAA               TTCTT TTCA AAGAA                TCCTGTTTAGAAAGT  44 71
JTM80_RS04485 1072990 .. 1073009 +  -2.8    -3.727   GTTGCGGACATCTAT            CCT-CCCCT CAC AGGGATAGG            TTTAGATATCCTAGC  52 7
JTM80_RS04490 1073945 .. 1073962 +    -2  -4.12397   TTTTGCAAGCCGGAT             CACG-CA TTTGC TGACGTG             TTTCTCGTTCTGTAA  57 152
        atpE 1074252 .. 1074289 + -12.1  -3.37612   TTGCCTAAGAGATGG   GCTGTGTGGCTGGGGTGC AGA GCATTTCAGCCACA-GGC   TTGCTTAGACTTGAG  80 33
JTM80_RS04500 1074944 .. 1074958 +  -2.8  -4.56629   GCTGACGGGGCAAGC               CGCT AGGTCGC AGCG               TTTTCTGGTGTTGTG  64 42
JTM80_RS04505 NONE
JTM80_RS04510 NONE
        atpA NONE
JTM80_RS04520 1078927 .. 1078966 + -11.6  -5.63517   CAAAAAATAACAGCA  GTTTTCCGTGAGCG CACACCTTTACA CGCTCACGGAAAGC   TTTTTTATTTAGCGC 100 69
JTM80_RS04565 1089769 .. 1089785 +  -5.7  -4.37092   AAAGCGGCCGCCGTG              GCAGGGG CAG TCCCAGC              TTTTCTCAGCAGCGT  69 248
        ftsH 1093518 .. 1093550 + -12.8  -4.68724   CGATTCAACAGGAAA      GGCGCAAAGGTATC CAGTA GATATCTCTGCGCC      TTTTGTCTTAACTAG 100 56
JTM80_RS04580 1094466 .. 1094507 +  -2.2  -4.12188   GGGCTGGTAGGTGGC CCATGCAGGAGCCAGACCC TCGGC GGGTTTCGCAGC-GTATGG TTTTGGGGCTGGTGG  55 31
JTM80_RS04585 1095396 .. 1095415 +  -2.8  -3.70676   GGCGATCGCACACCT            CGATTGGC TAGC GTCAGTTG             TTCATTTTACGTATG  52 15
JTM80_RS04590 1096472 .. 1096487 +    -4  -3.77666   TTCTGGTACGTTTCA              GGTTGA GCTT TCAATC               TTTGAATTGCCTCTA  54 456
JTM80_RS04615 1102146 .. 1102166 +  -3.9  -4.25104   GCACCAGCAGCCAGT            CGCCCCA GCGGACG TAGGGCG            TTTTGCTCCGGCGGC  62 92
JTM80_RS04625 1105227 .. 1105256 +  -4.9  -2.52464   CCAGTCTTGGGGGCG       GGTGTTGGGGTTT GTCA AATCCCCACCGTC        TCCATTGAGGGAAAC  43 364
JTM80_RS04635 NONE
JTM80_RS04640 1109432 .. 1109447 +    -4  -2.68603   TCCCCTCGGTTACCC              CGC-TTG CCC CAATGCG              CCTTTTTGCTCTGCT  43 72
JTM80_RS04645 1110857 .. 1110871 +  -5.6  -3.37493   TTAATGCCGAGGTCG               GCGGCA ACT TGGCGC               TTGATGTCTTCGCCG  53 189
JTM80_RS04660 1113484 .. 1113512 +  -4.6   -4.2828   CGGTCTGAACTCGGT       CTG-AACTGGCGG AGGT CTGCAAGTTTCAG        TTTTGGTAACTCCAC  66 215
JTM80_RS04665 1114135 .. 1114148 +  -5.9  -3.66803   CCAGAATCAGAGACG               GGGCG ATCG CGCTC                TTTAAGGTCTTGAAG  62 7
JTM80_RS04690 1120674 .. 1120696 +  -5.4  -3.09803   TCGACACCGATCCCA           TCTGCGACAG CGC CCGACGCAGG           TCTTCCGTCGAATTC  49 187
        lepA NONE
        selD 1129686 .. 1129698 +  -6.9  -3.05384   ATTCTGGCTCCATTG                CCTGG GGC CCGGG                TTCGCTAGGCGGCGA  54 197
JTM80_RS04735 1133216 .. 1133253 +  -7.7   -4.8543   AGCGTTTAACTGTCC   TTGCCTTGCAGCGACCGG ATT CCTGGC-CTGTGAGGCAA   TTTTTGTGGCCATTC  85 126
JTM80_RS04740 1133832 .. 1133847 +  -3.2  -4.09509   TACATCGCCGCGATG              GATAGC GGCC GCAATC               TTTCTATCGCTTGGT  56 21
JTM80_RS04745 1134500 .. 1134534 +  -2.3    -3.695   CGAGACTAAGCTTCC    CGCAGA-GTGTGAAAT TCGT ATTTGACATATTTGCG     TTTGACATATTTGCG  50 32
JTM80_RS04750 1136122 .. 1136139 +  -4.9  -3.15544   CGACAACGCGCAGGC             GATCGCCT GAT AGGC-ATC             TTCATCCACCTCGCG  47 392
JTM80_RS04770 1143239 .. 1143249 +  -3.2  -3.57561   GCCGATCCCGAATCT                 GCTT AAG AGGC                 TTTGCAGAATTGCGC  49 20
JTM80_RS04775 1144824 .. 1144835 +  -3.6  -3.58162   CAAACCGCCAAGGGT                GCTG GAAG CGGC                 TTGCTTTCATCATGG  52 123
JTM80_RS04780 1146678 .. 1146696 + -13.2  -3.54424   GAACCGCTCCGGAAG             TCCCCCTT ATT AAGGGGGA             TTTAGGGAGATCGAC  86 134
        moaC 1147687 .. 1147707 +  -3.9  -3.61398   CAACAGACGGTTACG            CTGTACGGT CGC GCTGTGCGG            TTATTGGGCGGACAC  52 153
JTM80_RS04795 NONE
JTM80_RS04800 1148691 .. 1148737 + -20.8  -3.41738   TAATAAATATAAAAC TCAAAGATCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGTTCAAGA TCTGTTTCTTAGAGC 100 120
JTM80_RS04820 1153665 .. 1153677 +  -7.7  -2.61912   AACGAGCCAAACGCA                TCAGC CAC GCTGA                CTTCTAGCTCCATGC  53 143
JTM80_RS04830 1155045 .. 1155061 +  -3.7  -2.88999   TGTAAGTTGCTGCAT              CTTCC AGCATGG GGAAG              TGTCCTGTCTCGGCG  44 133
JTM80_RS04855 1161779 .. 1161790 +    -3  -3.35046   CTGGAGCTAGAGACC                TGAT TATG ATCA                 TGTTTGGACGAGTCA  47 53
        dapA 1162985 .. 1162999 +  -7.2   -4.2558   TATCAATTGGTACAA               GCTTTT AGT AAAAGC               TTTTAGTAGAAGCTC  74 333
JTM80_RS04865 1165350 .. 1165379 +  -9.3   -4.4078   ATAAAGCAAGACAAA       GAGGGACACAG CCTATCAA CTGCGTCCCTC        TTTTGCTTGACAGAG  83 75
JTM80_RS04880 1171618 .. 1171642 +  -2.8  -2.97289   ATCAGCCCAAGGGCG          TTGCCGGG ATAGCCCCA CCCGTCAA          TCTGCTGTTTCAGGT  42 123
JTM80_RS04890 NONE
JTM80_RS04900 1176895 .. 1176925 + -11.3  -3.62864   ACTGATACAACGAAA       TGGTGTGTAGC TGCCCGTTT GCTACACACCA       TTTCCGCTCAGTTTG  79 183
JTM80_RS04910 NONE
JTM80_RS04915 1180090 .. 1180102 +  -5.5  -3.95022   CGAGGGATTCAGCGC                TGGGC GCA GTCCA                TTTAATGTTCATGAA  64 307
         def 1181237 .. 1181252 +  -4.6  -3.07935   AATGGCTTTTCGGTG              CAGGCT GTGA AGCCCG               TTGCCTGAGTCCCGT  48 2
JTM80_RS04930 1181517 .. 1181539 +  -5.5  -2.87132   AGTGACGGACTTTGT           GCCCCAGGT CGCCT ATCTGCGGC           TATGTGCCCCGACGG  49 36
JTM80_RS04935 1183214 .. 1183224 +  -6.8  -3.14132   AGCACGTCGCGGACG                 CTGG CAA CCAG                 TTGATCGGCCAGAGA  54 351
JTM80_RS04970 1192776 .. 1192787 +  -2.2  -4.36931   GTTCGACTTTAGATT                TTGG ATTT CCGA                 TTTTGGTCTGGCTTG  60 52
JTM80_RS04975 1193975 .. 1193998 +  -6.7  -3.14132   CGACGAATCACTCAG          CCCGGTTCA TTCCCT TAAACCGGG           TTCCTAAAAAACCGC  56 41
JTM80_RS04995 1198190 .. 1198205 +    -9  -2.89683   CTCTGTGGAATTCAG              GTTGGG GTTT CCCAAC               TCTGTCAGCTAGGCT  63 220
JTM80_RS05000 1201488 .. 1201507 +  -4.2  -2.77895   GCTGTTGGCCAGAAA            CGCAGCACG AGG CGA-CTGCG            ATTGTTCAACCTCGA  43 200
JTM80_RS05015 1205829 .. 1205841 +  -3.4  -3.85698   GGCAAAACTGCTCCG                GAAG TCCCC CTTC                TTTCTAGCGAAGCGG  54 424
JTM80_RS05020 1207046 .. 1207060 +  -5.6  -3.15861   CTGCACCTGCTCGAC               GCGCTG TTG CAGGGC               TTCCTGACGCTGCTG  49 258
JTM80_RS05045 1215386 .. 1215415 +  -5.6  -3.35046   GTCGCCATTAGAAAC       GTGCCGCCGGGT TTCAGC ACGCGATGGCAC        TCTTTCAAAAACTGG  53 472
JTM80_RS05055 1217385 .. 1217396 +    -3  -3.56099   GAAAACCCGTATTTT                TTAG AAAT CTAA                 TTTGGAGGCATTGTG  49 83
JTM80_RS05060 NONE
JTM80_RS05065 1219568 .. 1219580 +  -7.7  -4.72272   CAGAGGAATGGGTGC                CGTGT CCC ACACG                TTTTTGATGGAAGCA  82 136
JTM80_RS05070 NONE
JTM80_RS05075 1221416 .. 1221430 +  -2.8  -3.65426   AGCTTAAATGTCACT               CAAATG TCT CAGTTG               TTTACAAATTTGTGA  52 59
JTM80_RS05080 1222333 .. 1222357 +  -5.6  -3.52472   CTCTGGGTGAAACTG          GCAGGTGAAC GAGCG GCGCACCTGC          TTGCTTTCAAAATCT  55 251
JTM80_RS05090 1224921 .. 1224948 +  -4.1  -3.53811   GACTCCGGAGATAGC        GACGGACGATTC AAATC GAGTCG-CCGCC        TTTGAAAGGCCTAAA  52 60
JTM80_RS05095 1226370 .. 1226392 +  -5.5  -5.52023   TTCAGGAACTCCAAA           CCTCTGGGC TTTAC GTCTAGGGG           TTTTTTATTGCTAAT  91 157
JTM80_RS05145 1237541 .. 1237561 +  -5.4  -2.90723   AAACTAAAACGGCAA           GGG-GGTCG CTGG CGATCGCCC            TCTACTTGACGCTGC  49 265
        gltB 1242645 .. 1242698 +  -8.8  -4.68593   GGAGCGAGTGATGGA GTGACGGGGTGACGGAGTGGCGTA CATTAC TCCAATACTCCATCACCCCATCAC TTTTTCAATACTCCA  90 73
JTM80_RS05160 1243657 .. 1243681 +  -2.8  -2.79302   AGTGAGAGAGAATGA          GGGCCTGA CCTGTTCCT TCAGACCC          TATCCTCAAACTGCT  41 36
        acnB 1246479 .. 1246504 + -11.2  -4.49644   TTTCTCTAAGCTAGA         GTTGGGGCAG GCAAGG CTGCCCTAAC          TTTTGGCTTTTTGGT  95 73
JTM80_RS05170 1246975 .. 1246992 +  -2.7  -4.57341   CAAACAGAATGCCAC             GCTCTGGA GCC TTCAG-GC             TTTTTGCCAGCAGTT  66 211
JTM80_RS05190 1252083 .. 1252116 +  -9.6  -3.53012   AGCTCAGTCGAACGG     GGCGATTTGCGAAG CAATCC CTGCGGAAATCGCC      TTTCCAGCCAGCCAG  74 140
JTM80_RS05200 NONE
JTM80_RS05205 NONE
JTM80_RS05210 1255061 .. 1255089 +  -5.9  -3.03441   ACTGGCGCAGTTCGG        GCATGGCATTGCC GAC GATAATGCCGCGC        TCTTCGCCCATCATG  49 189
JTM80_RS05220 1257383 .. 1257397 + -12.8  -4.76233   AAAAATGCGAAAAAA               GCGGGC ACT GCCCGC               TTTCTTGTTTTCTTA 100 77
JTM80_RS05235 1262185 .. 1262230 + -10.6  -5.24799   GCTAGTATTTGCCTG TTTGCTTGGGGCTGCATGTT GAAGCA AATGTGCGGTTCCAAGCAAG TTTTTGTCTTTGTGG 100 165
JTM80_RS05240 1262775 .. 1262816 +   -11  -4.33928   ATATAAACCAACCGA TGCTGTGGGTCGTTGCGGGT TCAT GTCCGCA-CG-CTCACAGCA TTTGTGTTTGGAATG  91 110
JTM80_RS05245 1263883 .. 1263894 +  -3.6  -3.53563   CTGGAGGAGGCGTAG                CGCG TGGG CGTG                 TTTAGGCAGGCCTAT  52 26
JTM80_RS05250 NONE
JTM80_RS05260 NONE
JTM80_RS05265 1266622 .. 1266636 +  -7.8  -4.26681   ATCGCCTCCTCCTGC               CCCGTA ACC TGCGGG               TTTTGCATGGTTTGT  74 19
JTM80_RS05270 1268147 .. 1268164 +  -4.7  -2.66733   CAGCGCCTCAATCCG             CTCCGCC AGAC GGCAGGG              TGATGTGGCTTCGCC  43 279
JTM80_RS05285 1270396 .. 1270451 + -21.2  -5.23316   GACATTAATAAACAT AAAATCCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 88
JTM80_RS05295 1273467 .. 1273496 +  -6.4  -3.59627   CGAACTAGAAACAGA       CAAGGAGCAATC CTGGGC GATCGCTCCTCG        TTTCAAGGCTTTAAT  59 96
JTM80_RS05305 1278088 .. 1278104 +  -3.7  -3.06833   CCGTGAAGCAGAGGG              TTGCCAA TAT TTGCCAA              TGTAGTTTGATGTTT  46 66
JTM80_RS05310 NONE
JTM80_RS05315 1279221 .. 1279231 +  -8.2   -2.7556   GCAATTCTGAGGTCG                 GCCC GAT GGGC                 TGCTTGACTCAGCTT  59 8
JTM80_RS05320 1282314 .. 1282329 +  -6.1  -3.36823   ATTAGGTTAGATTTT              GAGGG GATACG CCCTC               TTGCATTTTGAACCG  57 106
JTM80_RS05325 1287721 .. 1287740 +  -5.7  -2.75825   AACTAAGTAGCCAAG            CTAGGCG CTTAAA CGCTTAG             TCAGTTTCTTGCGGC  51 59
JTM80_RS05330 NONE
JTM80_RS05335 1288660 .. 1288672 +  -3.3   -3.8647   CAGCTTGGGAAACGC                CAGAG ATG CCCTG                TTTGATCTGATGGAT  54 159
JTM80_RS05345 1290469 .. 1290495 +   -21  -2.73681   TTGGGCTTTGAACGA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TCGTTCAACTGCGTA 100 73
JTM80_RS05360 1293735 .. 1293758 +  -8.8   -2.6574   CATTGTGCATTGGTT          GGGCGATCGC TCTG GAGATCGCTC           TACTGTGCCTGCTTG  61 102
        aspS 1296172 .. 1296201 +  -2.8   -4.2123   ACTTCCACCTAAAAC       GCCAGACTCAGAG CCGAT CCCTG-GTCTGTC       TTTGTTACCTCGATG  59 164
JTM80_RS05375 1300576 .. 1300632 + -21.3  -3.36878   AACGAAAAATGAAGA CAGAAGAACGAAAAACGAAGAGAGA AAAACGG TATCTCTTCGTTCTTCGTTCTTCTG TCTTCATTGTTCTCT 100 86
JTM80_RS05385 1303186 .. 1303197 +  -2.2  -4.08945   GTCTGCAATTTTGAC                TTGC GATT GCGA                 TTTTGGAGGGCTGGT  55 147
JTM80_RS05390 1305179 .. 1305221 +  -6.2  -3.33261   CTAGCGCTTCCTCTT CTGC-CCGTTTGGCTGCGG CGGCTT CCTCTGCTAAACGGCGCTG TTCTGCCAGTTCAGC  56 399
         eat 1317199 .. 1317211 +  -3.3  -3.15544   GATTACGCCCGCCAC                GACGG GGC CCGTG                TTAATGCCAATCCGC  43 359
JTM80_RS05480 1325053 .. 1325068 +  -6.8  -3.08133   CCGATCCATGATCCG              CAGCGC TTCG GCGTTG               TTGCGTCCATAGATA  54 105
JTM80_RS05490 1327672 .. 1327712 + -11.9    -3.695   ACTCATGCTCCACAT  CCCCAGATACTTTTCAGTC CTT GCCTGAGGAGTGTCTGGGC  TTTCCAATCTTTCCA  85 121
JTM80_RS05495 NONE
JTM80_RS05500 1329831 .. 1329869 + -10.5  -3.99013   CAAAGCGTGCAAGAT  CC-CCCTAAA-TCCCCCTT AAA AAGGGGGACTTTAAGGCGG  TTTCTCCCCTTTTTA  84 205
JTM80_RS05505 1330174 .. 1330186 +  -3.3  -3.53012   TTTGCATGGGCCGAG                GCTGT GAC ACCGC                TTTCGGCACAGGCAG  49 76
JTM80_RS05510 1332523 .. 1332550 +  -8.4  -3.54459   AGCCCCCGATCCTGA        GCGGAGTCGGCCA ATA TGGCTC-CTCCGC        TTTCAGGAGCCTTAG  66 513
        phoU 1335080 .. 1335104 +  -2.2  -3.77846   ATACAATAGGTGGAA          TGTGGAAA ACAACGGAG TTTCCACG          TTTGCATCTGTTCTC  50 197
JTM80_RS05530 NONE
JTM80_RS05535 1338331 .. 1338344 +  -3.8  -3.53343   CTAATTAAACCGCTG               CACC GTTGGA GGTG                TTTCGGGCGCGGGTT  52 33
JTM80_RS05540 1339022 .. 1339034 +  -3.3  -2.72829   GTATCTGGCGGGCGA                TCGCC TCT GGCAA                GTTTGCCGGGATGTG  41 292
JTM80_RS05585 1348947 .. 1348960 +  -6.7  -2.78679   TTTTATCGAGTAAAA               TCCTC TCAT GAGGA                CTTTAGCTCCACAAC  53 15
JTM80_RS05590 1349886 .. 1349922 +  -3.6  -4.56775   TTCTCTGAAACTGTC   GC-CGACGTGCCATGCGG CAT CCGGCGGGCA-GTCGTGC   TTTTTCAGCGCCAGT  70 369
JTM80_RS05625 1357459 .. 1357483 + -16.5  -3.60475   GAGCCGGATTGAAAG          TCCCTCTCCCG CTT TGGGAGAGGGA          TTTAGGGTGAGGGTT 100 268
JTM80_RS05630 1359116 .. 1359146 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
        rplU NONE
        rpmA 1362585 .. 1362596 +  -7.2  -3.79668   GATAGGATTCTGGCG                GGGC GATC GCCC                 TTTGCTCGGTTCCCT  67 76
        trxA NONE
JTM80_RS05685 1368812 .. 1368839 +   -17   -3.5394   TTCAGAGCATTGTTT        GCGGGGCTGGCC AAGG GGTCAGCCCTGC         TTTACAGCAAAATTT 100 73
JTM80_RS05695 1372128 .. 1372142 +  -2.8  -3.16683   ACGAGCCGTGATCCC               ATTGCT GCC AGCAAA               TTCCTCCGGTCAGGT  44 30
JTM80_RS05700 1372830 .. 1372846 +  -2.1  -4.81644   AGATGACCAAAATGA              GAGGACT GCT AGCCCCC              TTTTAATTTTGTTTC  68 45
JTM80_RS05705 NONE
JTM80_RS05710 NONE
JTM80_RS05715 1376406 .. 1376432 + -11.7  -3.35467   ACAAAAAAACAAAAA        GACCTTGC-GAG AATT CTCAGCAAGGTC         TTGATGCTTTCTAGC  80 92
        psbB 1382202 .. 1382253 + -10.2  -2.78774   CATCTGAATTGTGAA TTGGAGGAGGGCTTGCTGAC-GAGT TTT GCTCTGTGAGCATTCCCTCCTTCAG GTTTGCAGGTTTGTA  69 42
JTM80_RS05745 1382515 .. 1382560 +  -6.1  -4.41206   TGCAACGATGCAAAA TCGGCCGTCGAATGGGGTTCCT GCT GGGGACGAC-TTCGACGGCTAA TTTTATAGGCTAATT  71 90
JTM80_RS05760 1386122 .. 1386144 +    -9  -2.94416   AAGCGGGCAGCATTG           GCCGTCAGCC AGC GGTAGGCGGC           TGTCTGATCGAAATC  59 222
JTM80_RS05770 1388239 .. 1388258 +  -4.2  -3.67052   GAATTGGGGTCAACG            GCGGCTGCT GTT GGC-GCTGC            TTCTCTTCCCAATCT  54 279
        aroA 1393162 .. 1393172 +  -5.4  -3.05384   GCAAACTGGTGGCTT                 TCCT GGT AGGA                 TTCGGTCACCAGGCA  49 315
JTM80_RS05830 1399720 .. 1399740 +    -6  -3.56142   TATTTTGGTCATGAT            CGAGGGCG ATCGC CGTCCCCG            TTCCTTCTTGCTGGG  59 520
JTM80_RS05890 1419590 .. 1419610 +  -4.6  -2.74784   CCCAACACCCGTACC            TCTGGGCG ATCGC CCCCCGGA            TACCTTTTGAGACAT  45 89
JTM80_RS05935 1428874 .. 1428899 +  -2.4  -3.36581   ATTTGGCGGGCATGG         TGCGGCGTGT GGGGGG GCGCGCCGGG          TTAATTAGCGCTTTC  46 54
JTM80_RS05940 NONE
JTM80_RS05945 1431047 .. 1431059 +  -4.7  -3.57144   AGGACTGCGTGAATC                CGCCC CAT GGCCG                TTTCAAAGTCCACGC  53 275
        psbA 1437432 .. 1437451 + -12.8  -4.62069   TTAGCTAGTCTCTGA            GCGCCTCC TGCG GGGGGCGC             TTTTTCGCGTGGGGA 100 89
JTM80_RS05970 1438886 .. 1438904 +  -7.4  -3.25472   GGGATCGAGTCAAAT             CCCGAC AAAAAAA GTCGGG             TATGTTTGACGCTGT  61 183
JTM80_RS05975 1440361 .. 1440374 +  -2.3  -3.36968   TTCCTAGGGGCAGGG               GCTAG ACTG CTTGC                TTCTCAGCTTCGATA  46 51
JTM80_RS05980 1441110 .. 1441125 +  -5.4  -3.79909   CGCTGCGATCGCCGC              CTGCAT TTCC ATGCGG               TTGTTGGTGGTTTGG  61 416
JTM80_RS06000 1444141 .. 1444163 +  -4.1  -3.61398   GCAGCGCCCACAGGT           CTGGGGC AAGGCCGCC GCTCCAG           TTGTTGGCAAACAGG  51 373
JTM80_RS06040 1453887 .. 1453923 + -21.1  -4.07568   TTTTGGGGTAGAGAG    TTTGAGATGATGAGCGC GTT GCGCTCGTCATCTCAAG    TTTTAAGCGCCCACC 100 30
JTM80_RS06050 1456704 .. 1456714 +  -6.8  -2.74012   GGATCTTAGACAGAC                 GGCT GTC AGCC                 TAATTCCCCTCCTAG  53 284
JTM80_RS06055 1457372 .. 1457386 +  -2.8  -3.68827   GAATCAGATAGGCAA               TCAACA CCA TGTAGA               TTTGAATGGTGACTC  52 291
JTM80_RS06065 NONE
        ccsB 1468314 .. 1468327 +  -2.3  -4.03234   TGGGCAAGGGACTGC               ACAGC TACG GCTGG                TTTCTGTAGCAAGAC  55 3
JTM80_RS06115 1468876 .. 1468892 +  -2.1  -2.94695   AGAACTCAGGGGAAT              TCAGGGA AAT TCCCGGC              TCTGCTTCCTGCTAC  41 41
        tilS 1469927 .. 1469954 +  -3.5  -3.77666   GCGCAAAGCAATAAA        CCGCAAAGAAAT AAACA ATTTCTC-GCGG        TTTAGATTGCGTATA  54 27
        ureA 1470420 .. 1470447 +  -6.4  -2.80816   ATGCTCGATGAGGGT        G-GATGAAGTGGT GGC ATCGCTTCATCGC        TCTCATCCATCGCGC  51 40
JTM80_RS06130 1470786 .. 1470810 +  -8.5  -3.86897   GAATGCACAAATAAA          CGGGCCGCT GGATTAG AACGGCCCG          TTTGTGCCCGGTCGA  72 10
JTM80_RS06150 1476622 .. 1476657 +  -2.4  -3.53012   TCACCTGGTTTACCC    GCTGACTC-GTCGGGCC GTA GGTCGGACAGGGCTGGC    TTTCACAGGGCGGCG  47 171
JTM80_RS06165 NONE
JTM80_RS06170 1479956 .. 1479967 +  -7.2   -3.3514   CGCTGCCAAAAGTTT                GGCC AGCA GGCC                 TTCTAGCATCTAAAT  62 473
JTM80_RS06175 1481544 .. 1481567 +    -3  -4.25283   AAAATCACCGCTGCC          CCCAGCAGCAC GGA GCGCC-CTGGG          TTTTCCTGAAAGACT  60 92
JTM80_RS06190 1484767 .. 1484801 +  -9.2  -5.60689   CGATCAGATTCCAGC     GGGGCCCGCAGCGTAT CGG ATACCTTGAGGGCCCG     TTTTTTGTTGTCTAA 100 197
JTM80_RS06255 1497184 .. 1497196 +  -9.1  -3.31322   CATCGAGCGTGACCA                CGGCT CCA AGCCG                TTCTGAGGCATTCGC  67 180
JTM80_RS06270 1500020 .. 1500036 +  -2.1  -2.95877   CGCCCCATGAATGGC              CTGGGCC AGC GGCTCGA              TCTCGTCTTCGTTTA  40 364
JTM80_RS06280 1504099 .. 1504129 +  -9.7  -5.44119   CTGAATACTTGGATT       TCAGTTGGGAAGG CGCGA CCGACCCAACTGA       TTTTTTTGCAGTCGC 100 111
JTM80_RS06285 NONE
JTM80_RS06290 NONE
JTM80_RS06295 1508499 .. 1508511 +  -7.7  -3.59966   TCCTGCATTCACGGC                TGCTG GCA CAGCA                TTCTCTATCCCGTCT  64 334
JTM80_RS06300 1509873 .. 1509926 +  -3.3   -4.4891   GCTTTTCGTCCTGTG CTCGATAGGGTAAAGTGGCATCCTG CCTAGT CAGGTTGTT-CTT-ACGCTATCGGG TTTTCTACTGATGCC  64 73
JTM80_RS06305 NONE
JTM80_RS06310 1512128 .. 1512142 +  -5.6  -3.54741   ATCTCCCTCCTCTTT               GGCATG AGC CACGCC               TTTAGAACGCTGCTG  56 19
JTM80_RS06315 1513172 .. 1513194 +  -8.3  -4.11751   CAGGCCACCAGCGCC           CCCTGCCCC GTTTA GGGTCGGGG           TTTTCACGGCTTCCT  74 11
JTM80_RS06320 1514069 .. 1514116 +   -17  -4.68124   AGATTAAAAAACAGA TTCTGA-ACCCTGCGCCGCCCGC GCA GCGAGCGGCGCAGGGTCTTTGGG TTTTATATCTATTAA 100 72
JTM80_RS06335 1516642 .. 1516654 +  -6.2  -3.71924   TTTGGGCACGGCGGC                GGCG CGATA CGCC                TTCTTCCGTCGTTTC  61 247
JTM80_RS06345 1518981 .. 1518997 + -15.1  -3.57462   GTTCTCAAACAGAAA              GCCCCGC ATT GCGGGGC              TTTACCAATGGGATC  91 175
JTM80_RS06355 1521079 .. 1521110 + -12.3   -5.3236   AGTTGATTCGTCCTG      CTCCGCCACTCTC CCTTTT GAGGATGGCGGAG       TTTTTTGTACGTTCT 100 96
JTM80_RS06360 1521856 .. 1521887 +    -5  -2.72471   CGCCCAGAGTTTTTC      CGCTGGGGCGATCG CTGG TGGTAGCCTGAGCG       CTTCTCTGGTCGCAA  48 2
JTM80_RS06375 NONE
JTM80_RS06380 1524903 .. 1524929 +   -21  -3.28712   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAAAACCCAG 100 168
JTM80_RS06385 NONE
JTM80_RS06390 1527732 .. 1527750 + -13.2  -2.73635   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  79 120
JTM80_RS06395 1528830 .. 1528856 +   -21  -3.28712   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAAAACCCAA 100 143
JTM80_RS06400 NONE
JTM80_RS06405 NONE
JTM80_RS06410 1532226 .. 1532258 + -13.5   -2.8294   AGATGAAGAAGCACA      GAGCGGGAGAGGG ACTTCAA CCCTCTCTTGCTC      TCCTTCTCCCAAGTC  79 51
JTM80_RS06420 1534036 .. 1534063 +  -4.8  -4.15044   GGTCAACGGTAAATA        GGGCAATCAGCTG AAG CAG-TGTTCGCCC        TTTATTGACGGCACC  63 357
JTM80_RS06430 1536312 .. 1536342 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS06435 1538091 .. 1538112 +  -9.3  -2.52464   CTGTCCTGAAACTTA           GCGCCCGTC ACCT GGCGGCCGC            TGAGTTCGGGCGGCA  59 461
        hisF 1540499 .. 1540514 +  -3.3  -3.57977   TATTACAAAACGTTA              CATTC CTATAA GAATG               ATTTTTATCCTGTTC  49 203
JTM80_RS06455 1540853 .. 1540872 +  -4.2  -4.55798   TCACCCCTGAGCTTG            TCTGAGCT TTGC AGCGCAGG             TTTTACTTTAAGCTA  68 31
JTM80_RS06470 1542996 .. 1543010 +  -2.8  -2.79796   TGAAGTGTTTCGAGG               CGGGTA CTT TATCTG               TGTCCTGAACTCCGC  41 38
JTM80_RS06475 1543541 .. 1543567 +  -7.3  -4.09685   ATCGCGGCTAATACG        GCTTGA-GTGCG ATCG CGCACTTCTAGC         TTTTGCAAGATCGAG  68 122
JTM80_RS06485 1544127 .. 1544141 +  -4.2  -4.20749   TCACTTCGCGGGGGG               ATGCTG AGC CAGCAC               TTTCTTGAGATATTG  63 125
JTM80_RS06495 1548387 .. 1548400 +  -3.1  -3.16647   GCGATCGCCATGCTT               GGGAA TGCA TTCTC                GTTTTGCTCAGTACA  44 105
        lexA 1553287 .. 1553299 +  -3.3  -3.90291   CATCCAGCATTCATC                GGGCT TTC AGCCA                TTTCATTCGCAGCGT  54 77
JTM80_RS06520 NONE
JTM80_RS06525 NONE
JTM80_RS06530 1556125 .. 1556143 + -13.2  -3.54424   GAACCACTCCAGAAG             TCCCCCTT AAT AAGGGGGA             TTTAGGGGGATCGCC  86 16
        rpmG NONE
JTM80_RS06550 1560018 .. 1560028 +  -2.4  -3.55444   GAACCAGGAAGGCTA                 GGCG TTT CGGC                 TTTGGGCGATCGCCC  47 25
JTM80_RS06555 1562602 .. 1562622 +  -3.9  -3.54129   AGGGATGGGGATAGC            TGACCAGCG AAC CGGTGGTGA            TTTCGCAAAACTCTC  51 427
JTM80_RS06590 1569538 .. 1569550 +  -4.1  -3.32022   GGTTAGGTGCGTCTA                CAACG GGC TGTTG                TTCCTATGTGCCAAC  48 125
JTM80_RS06595 NONE
JTM80_RS06600 NONE
JTM80_RS06605 NONE
JTM80_RS06610 1575000 .. 1575013 +  -5.3  -2.74461   CCAGGGGTAACGCTA               GAATG TTCA CATTC                CTTTACACATGGGTC  48 97
JTM80_RS06615 NONE
JTM80_RS06620 1576680 .. 1576691 +  -4.4   -3.0375   TACCCCTCTGGTTCC                TGAG TCCT CTCA                 CTTTATCGTCTTCCT  48 245
JTM80_RS06625 1577268 .. 1577294 + -13.7  -5.04249   TTGGTTTCCCTAGTC         CCCCGCTCCTG ACTGC CAGAAGCGGGG         TTTCTTTTTTGCCAC 100 53
JTM80_RS06630 1577830 .. 1577844 +  -3.4  -3.53224   AGGGTTAGGATGCCT               CCGGGC AGA GTCGGG               TTTCACGCAAACCTG  49 57
JTM80_RS06645 1580807 .. 1580821 +  -2.8  -3.60805   ATGTCTTTGAGATGA               GATGTC TTT GATGTC               TTTGAGATGAGATGT  49 133
JTM80_RS06650 1581441 .. 1581459 +  -5.2   -2.7263   TGATTGGGAAGTAGA             CAGTAGAC CGC GCCTGCTG             GTTTCCAACGCTGGT  48 328
JTM80_RS06655 1583387 .. 1583399 +  -5.5  -3.30474   CATGCACCTGTAGGT                CTCTG TTT CAGGG                TTGATAATTCTGGCC  53 137
JTM80_RS06660 1583938 .. 1583948 +  -3.2  -3.78409   GCCTGATGCTTCTAG                 CAGT CGT GCTG                 TTTAGGTTCGATTGC  52 152
        aroQ 1584639 .. 1584650 +  -5.8  -3.36803   GCTGCATTTGGGTAA                GCCA GATT TGGC                 TTATGGCTCCGATTC  57 192
JTM80_RS06695 1590488 .. 1590504 +  -3.6  -3.16742   ACGCAAAGGCAGTCT              GCGGAT GCTGA AACCGC              TTCATCCAGCTTGAG  45 304
JTM80_RS06710 1592576 .. 1592590 +  -2.7  -3.83026   TGCTGAGCCCCCCGC               CCAGG AGGAA CCGGG               TTTGGTCTGCCAGCA  53 120
JTM80_RS06720 NONE
JTM80_RS06725 1595538 .. 1595560 +  -2.7  -3.61106   CATAGCGGCATGTTG           TCTGCTGGA GCAAG TCTGGTAGA           TTGGTCTTTTCTTAG  49 36
JTM80_RS06730 1596679 .. 1596691 +  -3.3  -4.76041   ACACCAGCAGCACGG                TGCCC GTT GGGTG                TTTTTCCTCGATCTC  73 235
JTM80_RS06760 NONE
JTM80_RS06765 1602065 .. 1602081 +  -2.9  -3.69283   TCCAGGTAAAGCCGC              CCGGATA GCG TGTCCAG              TTATTCCCTGACTTC  52 216
JTM80_RS06785 1608481 .. 1608502 +  -5.1    -3.727   GCCCTGCGCCAAGTT           TTCATAGGC AAGA GCCTATGGC            TTTGAGTCTGCTGGC  59 290
JTM80_RS06790 1610348 .. 1610381 +  -6.8  -4.66163   GATTCAGTATCATAA     GCGGTGAGTCTTGAT GCTTG ATCAGG-CTTGCCGC     TTTTTACATCCGGCT  79 81
JTM80_RS06795 1611500 .. 1611512 +  -3.3  -3.01712   CATTGAAGATGGTGC                GACTC GGC GCGTC                TGTTGAACCGGGCGG  42 189
JTM80_RS06800 1612869 .. 1612879 +  -6.8  -3.56568   GCCCCACATCCAATA                 CCTG ACG CAGG                 TTTAGCCAGTGGTTC  62 47
JTM80_RS06810 1614784 .. 1614803 +  -6.4  -2.66232   GTTTGCTAAGATTTG            CAGGGACA GTGA TGTGCCTG             ATGTTTCGATAGTTT  50 62
JTM80_RS06815 1616335 .. 1616355 +  -4.5  -3.53012   ATCCGATCCTTCACG            CCCATGCGG GCC CCGCGCAGG            TTTGCGCCGCGCAGG  53 154
JTM80_RS06830 1619348 .. 1619366 +    -3  -4.24404   AAAAGAAGAGGTTTT             CTATCACG AAA CGTGCCAG             TTTTGCCATTTCAGT  59 152
JTM80_RS06835 1619907 .. 1619957 +  -4.6  -4.23758   ATTCAGGCTGCTGCA CGGGGGCAGGAGCTCGGCTGAGCG AGGAA TGCAC-GC-GGCTTCCTGCCCCCC TTTTCGCTATGCCGT  63 43
        gcvT 1621757 .. 1621769 +  -3.3  -2.97392   TCAGACCGACCAACG                CCGAA AAT TACGG                TAATCTTTTCCTGTA  42 114
        gcvH 1622237 .. 1622255 +  -3.8  -3.31461   TTTAGAATGAACAAA             TATGCGTT GTA AACGCGCA             TTGTAAAGATGCGTC  48 61
        rseP NONE
         nth 1624224 .. 1624254 + -11.3  -3.90291   AAGGCTAAACAAAAA      GCTGGGAGTTGATT GGTG AATCG-CTCCCAGC       TTTAGTTACAGGACT  84 90
JTM80_RS06870 1628631 .. 1628650 +  -5.6  -3.94634   AAGCTGATGAGCGTT            TTGGCGAG CGAT CGCGCCAG             TTCTTTGCCCTGGTC  64 367
JTM80_RS06895 1635667 .. 1635681 +  -4.2  -2.88861   TTCACGGGCGATCGC               GGCGAA AGA TTAGCC               TCTCTGGGCATAATG  47 88
JTM80_RS06900 1637071 .. 1637103 +  -6.9  -3.07222   AAGTCCTGTTCCGAT      TTGGGACAATCTCGG TGT CCGAGGGCGTGCCAA      TGTTGCGATAATGCT  56 207
JTM80_RS06905 1638957 .. 1638982 +  -2.6  -2.72344   CACGAAGTGGAACGA         TTTTTCGAGG TGTCGC CCGTGAAAAA          TCGTTCAAAATCCAA  39 208
JTM80_RS06910 NONE
JTM80_RS06915 1640920 .. 1640935 +  -4.6  -3.23853   CTCGTAAATCAGGAC              GCTGCC CGCG GGCACC               TGTTGCTTGCGACCG  49 463
JTM80_RS06925 1643080 .. 1643092 +  -3.3  -4.20932   GCTTTTGAACAGTTG                GCCTT TAG ATGGC                TTTTGAATGGCTGTT  59 81
JTM80_RS06930 1644685 .. 1644695 +  -5.4  -4.60924   GCGCTCTGGCTTAGA                 CTAG GCG CTAG                 TTTTTGCACCGTTTC  73 169
         eno 1646346 .. 1646360 +  -7.8  -3.40163   GCTTGTGGTTGATTC               CAGCGG AGC CTGCTG               TTGCTCTTGCTGATG  61 143
JTM80_RS06950 1651288 .. 1651299 +  -2.2  -3.49951   AGGGAAACGGGAACG                TTGC TAGA GCAG                 TTGTATGAACCTGTG  47 451
JTM80_RS06960 1652606 .. 1652642 +    -3  -4.41047   CGATAAAGCTGAAAA   GCGGGATGGTTTGAGGCG CTG TGCCT-GG-CTGTCCCGC   TTTTCGTTCCCAACT  61 115
JTM80_RS06990 1658363 .. 1658402 + -12.8  -2.84528   CACCTCATCCGCTTG  GCGATCGCCCTTCAGGTT GTAG ATCCGTAGGGGCGATCGC   GTTTCAGGTTTGTCT  77 57
JTM80_RS06995 1659026 .. 1659040 +  -7.1  -4.38712   GTCTAGGTCAATTCG               GTGGG TGTAT CCCAC               TTTTGTAACCCTCAC  74 268
JTM80_RS07000 1661865 .. 1661898 +  -3.2  -3.73224   TTGGGTTGGAGTGCC     TCTTCAACCTGGAT GAGGAA ATCGGGGTTAAAGA      TTTCCTGGGCGATCG  52 360
JTM80_RS07010 1662869 .. 1662893 +  -2.7  -4.35524   AGAGATTGTTTTGCG          CCGCCAATTCC TCA GGATTTGGAGA          TTTTAACTTTCGCGA  62 74
JTM80_RS07030 1665437 .. 1665456 +  -5.6  -3.60296   CGGGCATCGCCTAGC            CGCAGCCGC ACT GCGCC-GCG            TTTGCCATAGACCTG  55 279
JTM80_RS07040 1668034 .. 1668053 +    -2  -2.87683   TGAGGGTTTTAGCCC            GCCCGTTT CAGC ACAGGGGC             TGTCTCACCCCATCT  41 38
JTM80_RS07045 1669263 .. 1669274 +  -4.4  -3.57561   CAGATACCCTTCAGG                TTGC AGCA GCAA                 TTTCCAGGCTTGGAG  53 521
JTM80_RS07060 1675188 .. 1675199 +  -4.4  -3.14051   CTGAGGCAGAAAAAA                GATC TAAA GATC                 TATTGGTGCGGCTCA  48 269
JTM80_RS07065 1675946 .. 1675959 +  -3.8  -5.02357   AAGCTTTATGATTCC               GGCT TTTTTC AGCC                TTTTATTTACTTGTA  74 30
JTM80_RS07070 1678214 .. 1678238 +   -10  -3.60296   AACCCTCACCCTAAG          TCCCTCTCCC AGAGC GGGAGATGGA          TTTCCAATCCGGCTC  74 294
JTM80_RS07075 1679334 .. 1679356 +  -2.7  -3.55622   TTTCTGGCAGGATTT          TC-TGGCAGG ATCT CCTGGCAAGA           TTTCACAGCATTGAG  49 432
JTM80_RS07080 1682110 .. 1682136 +   -21  -3.31461   TTGGGTTTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 118
        ntcA 1684299 .. 1684312 +  -3.1  -3.64703   TCTACAACCCCGTAG               C-GCTG AGC CAGCAG               TTTACATAAAAAGCA  49 3
JTM80_RS07095 NONE
JTM80_RS07100 1686892 .. 1686929 +  -3.5  -3.53091   GATATGCAACTTTGT   TTTTGGCTAACTACTCTG CTA CGGGGT-GTTAGGCGGAA   TTTAGGAAGGAAAGT  52 459
JTM80_RS07105 NONE
JTM80_RS07110 NONE
JTM80_RS07115 NONE
JTM80_RS07120 NONE
JTM80_RS07125 NONE
JTM80_RS07130 1695142 .. 1695185 +    -6  -3.17051   TTTGGACTAGCATCG CCGCTAGC-GGCGAC-CTCT TCCGCT GGAGCGCCGCCAGATAGCGG TCTTCGTCATAGGGC  53 302
JTM80_RS07140 NONE
JTM80_RS07145 1699342 .. 1699368 +   -21  -3.30124   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAAAATCCAG 100 460
JTM80_RS07160 NONE
JTM80_RS07165 NONE
JTM80_RS07170 NONE
JTM80_RS07175 1710195 .. 1710208 +  -2.3  -3.63895   CGAAATTTGGGCGAT               CTGGG CGAT CGCAG                TTTCGACTCATTCCA  51 62
JTM80_RS07195 NONE
JTM80_RS07200 1714661 .. 1714685 +  -4.9  -3.03243   CAAACCAGCAACCCA          GCAATGCTGTT ACG AACTGCGTGGC          TGTTACGAACTGCGT  48 99
JTM80_RS07205 NONE
JTM80_RS07210 1717616 .. 1717627 +  -2.2  -3.55447   ATGACCAAACCATAC                TCTC GCTG GAGG                 TTCTGTAGTCCATGA  47 6
JTM80_RS07215 1718271 .. 1718284 +  -8.1  -2.70932   TGCGATAAGTCCTGT               GTGCC CAAC GGCAC                TAATTGGCCGCAGCG  58 223
         cax NONE
JTM80_RS07235 1723475 .. 1723502 +  -9.8  -3.57808   TCAAAGCACGTAAAA        GGGGACTAGACA TTTG TGACTAGCCCCC         TCTTTCTGGATTCAA  74 167
JTM80_RS07255 NONE
JTM80_RS07260 1730717 .. 1730729 +  -4.7  -3.05769   TGGAGGGAACTCGAT                CGCTG ATC CTGCG                TGTCTGGTTTCAAGA  48 75
JTM80_RS07265 1731371 .. 1731386 +  -3.2  -4.25104   CGAGCCAAGTGAACC              TCAGAG CCGT CCCTGA               TTTTCCTGCGAACCC  59 29
JTM80_RS07270 1733086 .. 1733097 +  -5.8  -3.68853   GGGGGAAATATCAAC                CCCT CCAA AGGG                 TTTGACGATTTTTCG  58 214
JTM80_RS07280 1733818 .. 1733842 +   -10  -3.29704   CAGAATCAAAAGGCT          TCTGGGCGAG CAAGT CTCGCCCAAA          TCTGTTTAATGGGGC  70 149
JTM80_RS07285 NONE
JTM80_RS07290 1735712 .. 1735725 +  -3.7  -2.62616   TCGAGCCAGACTTGC               CGGAC GACT GACCG                TGCTATGCGGACTCC  43 15
JTM80_RS07295 1737135 .. 1737145 +  -5.4  -2.89055   ACTGCATTTCCTCTC                 CTCA CCA TGAG                 CTATTTCTTGTTGCG  49 257
JTM80_RS07300 1738866 .. 1738921 + -13.2  -5.23316   GACATTAATAAATAT AAAACCCAAAGACCCTGCGCTGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 302
JTM80_RS07315 NONE
JTM80_RS07320 1743195 .. 1743212 +  -3.3  -3.53012   GCTGTGTGTCATCGT             CATCAGC CCGC GCAGGTG              TTTAACAAGAGCAGC  49 114
JTM80_RS07325 NONE
JTM80_RS07330 1745275 .. 1745304 +   -13  -4.18018   GTCTCTGGGTTGAAA       TCCTGCCAGGTT GTGACG AACTTGGCAGGA        TTTTGGCTGGCGAGG 100 51
JTM80_RS07335 1746488 .. 1746499 +  -4.4  -2.71731   ATTCAGTCGCCTTGG                GAAC ACCA GTTC                 TGGTTCGGGAATAAC  45 0
JTM80_RS07340 1747283 .. 1747296 +  -5.2  -2.64616   GGTGGCGCGGCTAAG               GCGC AAGGCG GCGC                TGATGTCCGTCAGGC  46 192
JTM80_RS07360 1751929 .. 1751939 +  -6.8  -3.25015   TTTGTTACAAACCGT                 GGCT CCA AGCC                 TTGCTGATCGTTACA  58 97
JTM80_RS07365 1753374 .. 1753389 +  -3.2  -3.34895   TCAAGGTCTTGAGCA              GGGTGA GAAT TCGCTC               TTGGTTGCGGGTGCG  47 436
        purS NONE
        purQ 1754852 .. 1754868 +  -6.5  -2.59881   CCAGGTCAGGTAGCA              GCAGGTA GAG TCCCTGC              GTTATCCGCTCCATC  48 209
JTM80_RS07415 1761950 .. 1761962 +  -5.5  -3.53224   ATTGCTAAACAGCCG                TCGCT TTC GGCGA                TTTCCAGAGACGGTG  56 85
JTM80_RS07420 1762611 .. 1762631 +  -2.5  -2.55267   TCCGAAATTCGCATG           GGCGGCGC AAAATA GC-CTGCC            TGAATTCCCGTCTTT  38 11
JTM80_RS07425 1763359 .. 1763372 +  -8.1  -4.27316   GAGGCCGTTCGCTAA               GCGCT GGCC AGCGC                TTTTGCCTTGCCACG  76 26
JTM80_RS07430 1764109 .. 1764125 +  -3.7  -2.83403   GTAAGGATCGGGAAA              CCAGA GCAAAAG TCTGG              GTTTCCTGCCCCGGA  44 234
JTM80_RS07435 1765330 .. 1765350 +  -2.5  -3.45366   TAAAATTCAAAACAC            TGGCTAG TCAATCC CTGGCCG            TTGATTCCTTGCGCC  46 372
        accC 1766908 .. 1766920 +  -7.7  -3.53444   AGGGCAGCGGCTCCC                TGCTG CAC CAGCA                TTTCCAGACCGCTGA  62 209
JTM80_RS07450 1770015 .. 1770041 +  -4.3  -2.93073   TCACCGATCTCGGCC         GTCGGGGGCAT TCGCC ATGACCCCTGC         TCCTTCTTCCAAGGA  47 6
JTM80_RS07455 1771428 .. 1771441 +  -2.3  -3.14344   ATGGCAGTACATATG               GCAGT ACAC ACAGC                TTAGTCCCGACGCTC  42 100
        uvrC 1773992 .. 1774008 +  -9.3  -2.78934   ATTTCTGTCGGAATC              GCCAGCG TCG CGCAGGC              ATTTGGAATGTCTAC  61 467
JTM80_RS07480 1779719 .. 1779732 +  -8.1  -3.93136   GCTGATTTCGATGTC               CTGCC GCGC GGCAG                TTTCTAAGTCGCTGT  72 5
JTM80_RS07485 1782474 .. 1782523 +  -8.7  -4.62471   CGACTTTCATAGCCT CAACACCGACCGTCTAGCA GACTATTTTCAA TGCTGAACGGTCGGTGTTA TTTTTGCGGATTCAG  90 75
JTM80_RS07490 NONE
JTM80_RS07495 NONE
        bcsA 1789638 .. 1789667 + -18.7  -4.61231   ACGTTTGAAGACAAA       GATGCGCTCCGAA CTGC TTCGGGGCGCATC        TTTTTGAGGGTATAA 100 215
        queA 1795346 .. 1795362 +  -7.9  -3.11459   AGAGCCGCAGTTTCG              GCGGGGT CTA GCTCCGC              TTCGCTGCTGATGTT  57 305
JTM80_RS07540 1796773 .. 1796786 +  -3.8  -3.29511   GAAGAAAATATATCA               GACC CTTCCC GGTC                TTGTCAGCGCCTCAG  48 342
JTM80_RS07555 1801295 .. 1801331 +  -9.3  -3.37796   TCATGAATCGAGGCG    CGGGCTGTGGAGGCGAT ATC GTCGCACTTGCAGCCCG    TTCTGCCTCATAAGC  69 69
JTM80_RS07560 NONE
JTM80_RS07565 NONE
JTM80_RS07570 1805166 .. 1805189 +  -3.2  -2.87132   ATTGCGAAAGCTCTG          GATTCTGCAA ACCC TTGTAAAATC           TCTCTACCGAAACCA  42 135
JTM80_RS07575 1806635 .. 1806682 + -26.4  -4.89838   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGTCTTTGGG TTTTATGTTTATTAA 100 80
JTM80_RS07610 1815084 .. 1815101 +  -3.3    -4.183   GGGGAAAGGGGGAAA             TCGGCAG AGCG CTGCGGG              TTTGTTGCAGGTTCA  59 42
JTM80_RS07615 1816683 .. 1816708 +  -7.5  -4.56597   GTAGAACCCGTTCAG         CGGCCGTGGAA AGTC TTTCGCGGCCA          TTTTTGCAGGCCCAA  79 72
JTM80_RS07620 NONE
JTM80_RS07625 1819720 .. 1819761 +    -8  -3.06969   ATTCATGCTCTAACC ATTGCGGCTTTTTGAGCG CCAATC CCCTCAAAAAGCCGCGCC  TATTCAGGTAACTTG  62 70
JTM80_RS07630 NONE
JTM80_RS07635 1821697 .. 1821713 +  -3.6   -3.5936   TCGCCCGTGCGCTGG              AGCGTG TCAGC CACGCC              TTTGCCCAGTTTGCC  51 274
JTM80_RS07645 1825417 .. 1825440 +    -3  -3.28712   TATTCTGGTGCGTCA          CTCG-CGGGAG TAT CACCTGTCGGG          TTGTAGAGGACGGCG  46 92
JTM80_RS07655 1826637 .. 1826648 +  -5.8  -2.88822   GCCTTGCCAGATTAA                GCCT TAAC AGGC                 TGGTTGTGTCGCCAA  52 71
JTM80_RS07660 1827746 .. 1827776 +  -2.5   -3.3422   AACACACACCACGTC      TGGGCTG-AGCCGG ATGC CCGGTTGCAGGTCG       ATTTTTGCACCCGTG  46 318
JTM80_RS07685 NONE
JTM80_RS07690 NONE
        msrB 1835462 .. 1835474 +  -9.1  -2.73007   TAATGCAGTCGGCGG                TGGGG ATG CCCCA                GTTTGCAAAGGTATT  58 365
JTM80_RS07760 1847987 .. 1848009 +  -5.5  -3.25824   TTTGCACTGACGGAG          CCGTCCTGAC AGTA GGCAGG-CGG           ATTTTCTGAATGCTC  53 17
JTM80_RS07765 1848817 .. 1848833 +  -3.6  -2.74012   CGATCGCCTCCACAA              TGCCCA GCGCG TGGGCC              TGCTTGGCGTAGTAA  43 109
JTM80_RS07775 1851978 .. 1851988 +  -4.6  -3.78022   GCATCGACCCAGATA                 CGCT CTA GGCG                 TTTCCTGCGTCTCAC  56 18
JTM80_RS07780 1853333 .. 1853345 +  -3.4  -3.48276   GAGCGGCTAGAAAAA                TTCC TACAC GGAA                TTCTATAGGCGACCC  47 5
        trxA 1853920 .. 1853944 +  -7.9  -4.20696   TCTGAGGTTCAGTCG          TCCCTACCT TATCCAC AGGTGGGGA          TTTTGCGCTTGCTAG  74 128
JTM80_RS07810 1862819 .. 1862836 +  -5.5  -3.28712   TTGTCTAAATTCGCA             CATCCGG GCTT TCGGGTG              TTCTGAAGACCCAGG  53 122
        rpsB NONE
         tsf 1864694 .. 1864739 +  -6.1  -4.23529   AGTAGGATCAGAGCA GGGCTGGATTTTGAGAGCTTG AGTT CAGTTTCTCGGATTCCAGCGC TTTGTCTGTTCGTCT  68 36
JTM80_RS07825 NONE
        recG 1868638 .. 1868654 +    -5  -3.59979   AGGTGGGTCAGCAGG              CGGGAG AAAGC CCCCCG              TTTCGACTCCCAACC  56 60
JTM80_RS07835 1869749 .. 1869767 +  -2.2  -3.64371   CAACTGCGCCAAGTT             TAGGAGCG TCT CGCGCCAG             TTTGGGCTGTGGGTT  51 314
         sir 1877591 .. 1877609 +  -3.1  -4.28111   GCTGCGGCTCTGCTT             TGCGTCG GCTTA CGATGTA             TTTCTTGATGATGTA  61 194
JTM80_RS07870 1879448 .. 1879488 + -13.5   -3.7347   TGACGGGAGAAGAGA  GGAAAAAGAAAGAACGAAG AAG TTTCGTTCTTCCTTCTTCC  TTCTTCCCTCTTCCC  90 45
        rnpB 1883071 .. 1883083 +  -3.3  -4.25104   TCAGACTTAAATCAG                CAGCA CGG TGCCG                TTTTCGTCAACCGAC  59 350
JTM80_RS07900 NONE
JTM80_RS07905 1886776 .. 1886786 +  -8.2  -2.71712   CCTCTTCGTCCTTGG                 GGCC GAC GGCC                 ATTTGCACGACGAAG  59 86
JTM80_RS07915 1888024 .. 1888035 +  -5.8  -3.18681   TTTTGGGGCAAATCG                GCGA ACTT TCGC                 TTCGTAAACTTGGAA  55 7
JTM80_RS07930 NONE
JTM80_RS07935 NONE
JTM80_RS07940 NONE
JTM80_RS07945 1897317 .. 1897329 +  -3.4   -3.3452   TCCAATTCCTTGACT                GCTA AAGCC TAGC                TTCTAAACTGGTATG  47 85
        xseB 1897768 .. 1897780 +  -6.2  -2.79302   AAAGCGCCAGCGCTG                CCCC AATTC GGGG                TGTGGTGAAAATCGT  49 182
JTM80_RS07960 1898766 .. 1898824 + -8.29999  -3.08679   ATTGCGATAAGCTCT CT-G-GATTTTGAGCGATTTTTCGCAGGC TTA GCCCGCGAAAAATCGCTCAACTGCGTAAG TCTTAACTCCAAAAC  62 93
JTM80_RS07980 1903324 .. 1903335 +  -3.6  -4.59773   AGGTGGATCGCCAGC                GGGT CATA GCCC                 TTTTTCAAAATGCCG  70 288
JTM80_RS07990 1905755 .. 1905772 + -12.7  -5.47218   AGAAGCAAGTTAGGA             GGGAGCG CAGA CGCTCCC              TTTTTTTGCGTCGGG 100 88
JTM80_RS08010 1910944 .. 1910966 +  -2.8  -2.91383   GTCATAAAGTTCTGG          TTGTATCGG TTTGCC CCGAT-CAA           TCTGTCCGTCCGAAT  42 83
JTM80_RS08015 NONE
JTM80_RS08020 1913099 .. 1913111 +  -4.8  -4.06904   TGGATCTGACGGACG                CTGG GCAGA CCAG                TTTCTAGTTCGATGC  62 301
JTM80_RS08030 1914300 .. 1914313 +  -5.9   -3.1875   AGTGTTTAGCGGCAC               GGCGC TATA GCGTC                TTGGATTAACCTCTC  55 16
JTM80_RS08035 1915940 .. 1915969 +  -4.4  -3.28712   AAGAAATGCGTCCAG      CGCTGATCAGGACG CAGC CGTTC-GATCA-CG       TTCTCCAGCCAGGGC  49 319
JTM80_RS08050 1919590 .. 1919600 +    -4  -3.35813   ATCGCTCACCTAAAG                 TCTT GAG AAGA                 TTCCTTAAAATCGCG  50 218
JTM80_RS08055 1920101 .. 1920113 +  -3.3  -3.68936   CCGTCATTTCTGTTC                CCATG TCG CTTGG                TTCTTCCCCTTCATG  52 110
        sixA 1921117 .. 1921127 +  -2.4  -3.55444   TTCCGCCACCGAAAG                 CCGC CGG GCGA                 TTTCAGGGCTAGCGC  47 519
JTM80_RS08075 1926172 .. 1926218 +  -6.5  -4.91109   CTTGAGTGATCAGAA CGCCCCCTCACCTTGACTTTGT TGAG ACTCTGTTGAGGTG-GGGGGTG TTTTTATGCTCAGCG  86 58
JTM80_RS08085 NONE
JTM80_RS08095 1930719 .. 1930740 +  -7.3  -3.48115   CGTCCAAGGGCGATC           GCCCCACGAT TTA GTC-TGGGGC           TATGTTTTCTGGGGC  62 41
JTM80_RS08100 NONE
JTM80_RS08105 1931456 .. 1931494 +  -8.7  -3.53091   AATCCCTCTCCCAAA   GCGGGAGAGGGACTGCT AATCC GGCTCCCCTTCTCCCGC   TTTGGGAGAAGGGGT  70 231
JTM80_RS08110 1933088 .. 1933106 +  -8.8  -2.77043   GTCCAAATCCGCCGA             GCCTGAGG CTG CATCAGGC             ATTTCCGCTGCTCCG  62 443
        ftsZ 1934529 .. 1934582 +    -8  -4.30014   GGTTCACTCAATGGA CTGTTCTTGGAGCGATCGC-CAGCC TGCCT GCCAGAGCGATCGCTCCTTGAGCTG TTTTGCATTAATCCA  79 77
         upp NONE
JTM80_RS08130 1936523 .. 1936534 +  -7.2  -3.14881   GATGGAACGGGTGCG                GGGC GATC GCCC                 TTACTAGCCCCCTTG  59 7
JTM80_RS08135 1937177 .. 1937196 +    -5  -3.51825   TTGATCCCAGTCGAG            TCCGGT TTTGCATC ACCGGA             TTATCGTTGGCATCG  53 191
JTM80_RS08145 NONE
JTM80_RS08150 1939158 .. 1939181 +  -8.8  -3.92324   CATAAAAGCCAAAAA          GCCCAGAGTT GAAA GACTCCGGGC           TTTCCTGTTAACGGC  75 120
JTM80_RS08165 1946027 .. 1946053 +   -18  -3.43437   ACCTCGCAAATGCAA         AAGGCACGGCGC ATC GCGCCGTGCCTC         TTATGCGCTTTTATA 100 48
JTM80_RS08185 NONE
        ureG NONE
JTM80_RS08195 1953326 .. 1953352 +   -21  -3.31461   CTGGGGTCTGGACAA         TTTCTCGCGGGC GTA GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 138
JTM80_RS08200 1953927 .. 1953938 +  -4.4  -3.87869   AGTGCAGAAATAAGG                TCTG AAAG CAGA                 TTTATAAAAACTTAA  59 152
        urtA 1955420 .. 1955444 + -17.9  -4.46514   ACTGGTTTCTTAGAT          TTCTCGCGGGC GTG GCCCGCGAGAG          TTTCTTTACCTAGCT 100 50
        urtB NONE
        urtC NONE
        urtD NONE
        urtE 1959753 .. 1959765 +  -7.7  -3.17075   GACTCGCTCTAGCTG                CCAGA GAA TCTGG                TTCCCTTCGCGGCGC  59 175
JTM80_RS08235 1961034 .. 1961044 +  -8.2  -3.37056   AGACTAAGTTGCGAT                 CGCC ATA GGCG                 TTGTCAATCCGTCCT  61 185
JTM80_RS08245 1965437 .. 1965449 +  -4.8  -3.55444   GGACTCGGCAGGCAG                CCGT AGCTC ACGG                TTTCGCAAGTCCGCA  54 81
JTM80_RS08255 1968268 .. 1968304 +  -9.5  -4.75219   TAAATCCTCCGGATA   TCCCCCCGAATTCCTA TCGCAC TGGGAAA-CGGGGGGA    TTTTCTTAATCATTG 100 367
JTM80_RS08260 1969474 .. 1969484 +  -3.2  -2.57132   TCCAGTCTGCGGAGT                 TCGT CGG ACGG                 CTTATCCAACACCAA  40 489
JTM80_RS08290 NONE
JTM80_RS08295 NONE
JTM80_RS08300 NONE
JTM80_RS08305 1979456 .. 1979473 +  -4.7  -4.94972   CGTTTGAATCGCTGT             GCCGCTG GGCG CGTCGGC              TTTTTGGTTGTGATG  80 380
JTM80_RS08325 1983528 .. 1983542 +  -3.4  -4.58283   AATGCCGAGCGATCG               CAGGCG CTC TGCCAG               TTTTTCGGCGCGTTC  64 117
        serS 1985105 .. 1985133 +  -2.3  -3.71917   ACTCAGTGCTGGAAA        CTCAGGACTGGAG ATT TTTCAGGCTGGAG        TTTCAGATTTGCAGT  50 121
JTM80_RS08335 1987067 .. 1987078 +  -4.4  -3.61715   CTTGGGCAGTTGTCG                GTCA TCGG TGAC                 TTCTTCCACGACCTG  53 504
JTM80_RS08345 1988916 .. 1988950 +  -8.6  -4.74132   AGAGTTTGCCTGTCC     TCTTTGAAGGCTTCAG ATT CTGTATCCTTCGGAGA     TTTTTAATCAAGTAT  86 371
JTM80_RS08350 1990181 .. 1990203 + -11.3   -4.2349   CCTGGGATTTTTAGT           GCGCTCTCT TCGAC AGAGGGCGC           TTTTCGGTATGGGCG  91 266
JTM80_RS08355 NONE
JTM80_RS08360 1991741 .. 1991754 +  -3.7  -4.84761   TAGGAGTTTGCTGCA               TGGCG CGAT CGCCC                TTTTTCTGCCCGTCT  75 290
JTM80_RS08375 1997059 .. 1997069 +  -4.6  -3.39895   TCTCTCCATACGCTT                 GCTG ATT CGGC                 TTACTTGCTGCCAAG  52 352
JTM80_RS08385 1997726 .. 1997736 +  -5.4  -2.94701   CACCCTCGAAAAACT                 CGAA ACA TTCG                 TGCTTTCGGCTCTTT  49 75
JTM80_RS08390 1998665 .. 1998675 +  -2.4  -4.63218   ACCCGGCCACCTGGC                 AGGC TTA GCCG                 TTTTCTTGCAAACAA  65 18
JTM80_RS08395 NONE
JTM80_RS08400 2001271 .. 2001282 +  -5.8  -3.74693   GTGCTGTAAAGTCTT                GCCA GATC TGGC                 TTTCATGACCTGGGA  62 167
JTM80_RS08405 2001632 .. 2001648 +  -5.1  -3.35015   AAGAAAGGCCCGATC              TCCAGGA AAC TCCTTGA              TTCTCCCCTGGTTCC  54 9
JTM80_RS08410 NONE
JTM80_RS08415 2003086 .. 2003123 +  -2.5  -4.07885   GGATCGAAGCCCATA   GCTCCTGAGTTGGAGCC GGAG GGCTTGGTCAGAGGAGC    TTTTGGGCCAGCGTC  55 262
JTM80_RS08420 2006262 .. 2006283 +  -2.9  -4.55295   GCTCTTCGGGATGTT           GCTAGCCAG TTAT CTGGTTGCC            TTTATTTATCGCCCG  64 83
JTM80_RS08425 NONE
JTM80_RS08430 2008980 .. 2008990 +  -3.2  -2.90212   GGCTAGCTAGTCCCC                 CGCA GGA TGTG                 TCTATAGACTGATCG  42 35
JTM80_RS08435 NONE
JTM80_RS08440 NONE
JTM80_RS08445 NONE
JTM80_RS08450 2013465 .. 2013483 +  -5.2  -3.29096   CCCGCTACTAGCGAG             GTATCTCG CGG CGAGGCAC             TTCATAGTTACTGCA  53 47
       psbV2 2017049 .. 2017067 +  -2.3  -3.16921   GCACCTGGCTGGGGC             ACGGCTG ACTTC TAGCCGC             TTCCTAAACGTTGCT  42 11
JTM80_RS08475 2018167 .. 2018185 +  -8.8  -3.65529   TTTTCAAAAATGCGA             TCGCGCTC AAC GAGCGGGA             TTTCAGTGCCCGTAT  69 337
JTM80_RS08485 2023048 .. 2023059 +  -2.2  -4.30416   ATTGTGATGGAATAG                TCCG ATTT TGGA                 TTTTAGATTGGTGAT  60 26
JTM80_RS08510 2026639 .. 2026651 +  -6.3  -3.66772   CGCCAGGTGTTGCGT                CTGAA GTA TTCAG                TTCTTGAAGGTTTGG  62 122
JTM80_RS08515 NONE
JTM80_RS08520 NONE
JTM80_RS08525 2029776 .. 2029802 +  -6.5  -4.12198   AGTGACCCGCATCAA         TGGCTGCTTGC CCTGC GCTAGCGGCTA         TTTTCCAAAGTTCTG  69 52
JTM80_RS08530 2033336 .. 2033352 +  -6.5  -3.55563   GCCCTTGACCAGCAC              TGCACCG GGC TGGTGCG              TTTGCAAGATGCGCT  58 404
JTM80_RS08540 2034612 .. 2034635 +  -2.3  -3.75153   TCTGCCTGAGATTTG          CCGGACTTG GCTGAA CGGGTCGGG           TTTGGATTGGGCGGA  50 32
JTM80_RS08545 NONE
JTM80_RS08550 NONE
JTM80_RS08555 2039329 .. 2039351 +  -6.3  -3.05268   GCAGCAGGCTGGTTT          CGGCAT-CGC CCGC GTGAATGCCG           TATTCCAACTCCTTG  52 331
JTM80_RS08565 NONE
JTM80_RS08570 2042641 .. 2042652 +  -3.6  -2.63102   TCACCCAAATCTGCT                GGTG CAAA CGCC                 TAATGTAGGCCTAAT  43 119
JTM80_RS08580 2044337 .. 2044355 +  -2.3  -2.70774   GCCCAAGCCCAACGC             CGACCAG TGTAT CTGGCTG             ATTGTCGTTGCGCTG  38 156
JTM80_RS08595 2049359 .. 2049392 + -14.7  -5.09426   TTTTGAGTTTAGCGG     TTGGCGTTCCTAGAC TGAG GTCTAGGGACGCTGA      TTTTTTGGAGTTCGG 100 56
JTM80_RS08600 NONE
JTM80_RS08605 2053961 .. 2053980 +    -5  -3.61536   GCGTTTAGATTTCAG            GTTAAGCT TTCA GGCTTAGC             TTTCGGGCTTAGCTT  56 61
JTM80_RS08620 NONE
JTM80_RS08625 2061906 .. 2061961 +   -22  -5.40004   GGACATAAATAAACA TAAAATCAAGAACCCTGCGCCGCCCGC CGC GCGGGCGGCGCAGGGTT-TGGAATCTG TTTTTTAATTTGGTC 100 47
JTM80_RS08630 2062975 .. 2062993 +    -6  -3.76402   GCAGTCCTCAGCGAC             TTCTGGGG ATG CTTCAGAA             TTTCGTCCATCGCCT  61 382
JTM80_RS08640 2065889 .. 2065902 +  -4.5  -4.26202   TGCGCCCGTGCCGCT               CCGGT TTTG ATCGG                TTTCTTCATCCATCT  67 16
JTM80_RS08660 2070472 .. 2070488 +  -4.4  -4.29738   GTCTCAGCAAAAATC             GCGGGCA CGTT TGCC-GC              TTTTACTGCGTCTGC  67 238
JTM80_RS08670 2073046 .. 2073057 +  -2.2  -3.09516   CCGTTACGCACGAGC                GATG GATG CGTC                 TTCACTCCTAAACCC  42 99
JTM80_RS08675 2074149 .. 2074171 +    -2  -2.91912   TGCTGCGGATCGGTT           TTTCCCAAGA CAG TTTTGGAAAG           TGTCTGGCTGGATAA  41 162
JTM80_RS08680 2074617 .. 2074658 +  -8.7   -5.1244   AGCAACCCACAAGTG TAAAGCCCGGAGCGAGG CGAAAGGA TCTTGCTCCGGGCTAGA  TTTTTGTCTTGATAG 100 101
JTM80_RS08690 2079896 .. 2079907 +  -4.4  -2.59971   CGAAAAACGAAAAAC                GGAA CCTC TTCC                 CTCTTCGTTCTTCCC  44 75
JTM80_RS08695 NONE
JTM80_RS08700 NONE
JTM80_RS08705 2082878 .. 2082894 +  -7.2  -3.33671   CTTTGGCGGTCTTCA              GCGGTG ATTCG CGCCGC              TTATCAGATAGATGT  61 145
JTM80_RS08710 2085231 .. 2085245 +  -7.8  -3.52787   ATGGTGTGCCAAAGT               CCTGCT TCT AGCGGG               TTGTAGTCTTCCGTC  62 436
JTM80_RS08720 2086856 .. 2086866 +  -5.4  -3.36175   TGGGAGGCAATCGCC                 GCTA CGA TAGC                 TTCTAGATCGGCGTT  53 160
JTM80_RS08735 NONE
        rplD NONE
JTM80_RS08745 2090268 .. 2090278 +  -2.4  -3.18264   CCCTTAAGAGATTGA                 AGCC ATG GGCA                 TTCGTACATACCGAC  42 56
        rplB 2091167 .. 2091182 +  -2.6  -3.80114   ACAGGGTTTATGGTT              CGT-TGA CTA TCACACG              TTTGGTCAATTGGTA  50 57
        rpsS 2091469 .. 2091486 +  -5.5  -3.19192   GGGACATGCCAAGAG             CGACAAG AAGT CTCGTCG              TTAGGTTGAGTCAGG  53 4
        rplV 2091969 .. 2091984 +  -2.5  -4.18494   CTGAAGACTAAGTTA              CGACCC TGTTT GGG-CG              TTTTGAATGGCGATC  57 30
        rpsC NONE
        rplP NONE
JTM80_RS08775 NONE
        rpsQ NONE
        rplN 2094171 .. 2094183 +  -4.7  -2.78463   AAGATTGTCTCGCTG                GCTCC GGA GGTGC                TGTGATGGGCAAGCT  45 8
JTM80_RS08790 2094548 .. 2094567 +  -3.6  -2.87344   ACGTTTCATGTTTCA            TTCCTG ACCAAGCC CAGGAA             TATATCAGGAGAGTG  45 53
        rplE NONE
        rpsH 2095609 .. 2095620 +  -4.4  -3.21096   GCTGCTTGGGTCAAA                GCTA AATC TAGC                 CTTTCATTTTATTTG  50 76
        rplF NONE
JTM80_RS08810 NONE
        rpsE NONE
JTM80_RS08820 2097671 .. 2097712 +    -8  -4.36914   GGAGCGACTTTGCAG CAAGGCAGAGCGGTGAGTG GTTGG CTCTC-CTGCTCTGCTTAG TTTTATAGAGGGAGA  79 46
        secY NONE
JTM80_RS08830 2099772 .. 2099800 +  -2.3  -3.98661   CTCAACGGTTCCCTG        GGGTATGAAAGCG GTT TGCTTCAAGACCC        TTTGTGATGGATATG  55 199
        infA 2100231 .. 2100247 +  -5.8  -2.69871   GCGTTTAGCGCGATC             GCCTGCC CACA GGC-GGC              ATATTTAATCTGAGA  50 78
        rpmJ 2100475 .. 2100493 +  -3.9  -3.67864   GTTGAGTGGTTGAAT            C-GACCTA ATCT TAGGTCAG             TTTGAAGTTGAGTTC  54 44
        rpsM 2100960 .. 2100976 +  -6.6  -3.86194   CTAGCGGACTTGTGT              GAACCA GTGCG TGGTTC              TTTGTCAGGCCGCTT  67 61
        rpsK 2101794 .. 2101805 +  -4.4  -3.58703   GATATCTTTGCTAGG                CTGA CCAG TCAG                 GTTTTGTTTCTCCAG  54 143
JTM80_RS08855 NONE
        rplQ NONE
        truA 2104289 .. 2104302 +  -2.3  -3.75461   AGCCTCCTACTCTGA               GCCTC CTAC GAGCC                TTTCCTGACCCTTTG  50 73
        rplM NONE
        rpsI NONE
        rpmE 2105613 .. 2105636 +  -7.4  -3.06509   AATTTTGACCCTCAC          GG-GTGGCGAA CCC TTCGCCTCACC          TATCGTTCTTTCCCA  59 75
        prfA 2106750 .. 2106791 +  -5.1  -3.14051   AAATGGCTGCGTCTT CTTGATGCAAGCCCGGC CGATGCAT GTCAAGCCTGCATCAAG  TCTTCGTGAAGCTCG  51 21
JTM80_RS08895 2109415 .. 2109430 +  -5.4  -4.13872   TACTCGGCAAGATTT              CGCATA CTTT TGTGCG               TTTGTCTGGTTAACT  66 345
JTM80_RS08900 2110078 .. 2110091 +  -2.3  -3.61764   GCCCTTGGTATTGCT               GCTCG ACCC CGACC                TTTAAAACTTGATCC  47 140
JTM80_RS08905 2110761 .. 2110772 +  -3.6  -3.36671   CCCAACATAAAGCGT                GGTG GTGT CGCC                 TTCTACACTTGGGCT  49 256
        sppA 2112210 .. 2112237 +  -4.8  -2.79796   GCGACGAGCGGCGTG        CCG-CTGTGGATG TAT CGGCCATAGGCGG        TGTGATGGAGTCACG  45 2
        aroH 2113022 .. 2113045 +  -4.4  -4.07687   TTGCGACGGAAATCG          GGC-GGCAGGG CTT CCCAGCGAGCC          TTTTCAACCCAGGCT  62 311
        recN 2115795 .. 2115805 +  -6.8  -3.21099   CTTGCTACGCAGAGA                 GCGT CCG ACGC                 TTGGTGATCAGGCGA  58 285
JTM80_RS08955 2125009 .. 2125023 +    -7  -3.59979   CAGCAGCCCGTGGTT               GCGGAG AAT CACCGC               TTTGCGATCGCCCAG  60 271
JTM80_RS08975 NONE
JTM80_RS08980 2131817 .. 2131840 +    -6  -2.71364   CAGCGTCAAGATGTG          CTGCGG-TGTG TGC CACATCCGGAG          TAATTGACGAAGTGG  51 409
JTM80_RS08990 2135077 .. 2135088 +  -4.4  -4.28774   GGGCGGGCGTGCTGC                CTGT GCAG ACAG                 TTTTCACTTAGGTGA  66 3
JTM80_RS08995 2137654 .. 2137685 + -14.5  -4.71061   GGGGACTTTACCAAA      GCGCTGCGCGA TAACGACTCC TCGCGCAGCGC       TTTTTGGGTATCAGT 100 169
JTM80_RS09005 2142585 .. 2142601 +  -2.1  -3.53811   ATCATCCCCTAGACG              GAAGCCT TGC AGGCGGC              TTTGCACCGCCTAAG  47 29
JTM80_RS09010 NONE
JTM80_RS09015 2144011 .. 2144054 +    -9  -3.77484   AGCCCGTCACAAACA G-CGATGCCAGTCCTGC CACGATCATCA GCAGGGCTGGCATTGGC TTTCGGGTTTTAATC  69 93
JTM80_RS09030 2147028 .. 2147044 +  -6.5  -3.26545   AAAGCCTTGGGGTCG              TGTGGGC TTT GCCTGCA              TTCGTCCTCTGTGAA  58 119
        gndA 2148575 .. 2148608 + -17.5  -3.44325   GCGCTTTTCCTGCAA     GAAACCGCCGCTTGG GTTG CCAGGCGACGGTTTC      TTAATTCTCAAAACT 100 50
JTM80_RS09045 2151433 .. 2151444 +  -3.6  -2.51133   GACCAAGCTTCTGTA                GGGC GATC GCTC                 CTTGATCGATAACTC  42 2
JTM80_RS09050 2151996 .. 2152006 +  -6.8  -4.66625   AGCTATCCGGATTTC                 TGCG GTT CGCA                 TTTGTTTCTCTCTAT  79 110
JTM80_RS09055 2152465 .. 2152495 +  -8.3  -2.78395   AGGCAAAAAACAGCA       GTGGGGAAAGAAA CTGGC TTTCTCACCCCAC       TGCTTAAAATTTATT  59 98
JTM80_RS09080 NONE
JTM80_RS09085 NONE
JTM80_RS09100 2166864 .. 2166876 +  -6.3  -3.46913   TAATTCTCTAAGCTC                CCTAA TTT TTAGG                TTCTAACTTCTATGT  57 422
JTM80_RS09105 2167489 .. 2167503 +  -5.7  -3.02461   AACCTCCAGATCAAG               TCCCT CCGGC AGGGA               TCTTGAACAGCCTTC  52 111
JTM80_RS09110 NONE
JTM80_RS09115 NONE
JTM80_RS09120 2169646 .. 2169664 +  -6.7  -5.52023   AATATGCTCCTCAAA            GCCACGCC GCAA GG-GTGGC             TTTTTTGTTGGTGGT 100 251
JTM80_RS09130 2174477 .. 2174495 +  -3.8  -5.06414   GCCTTCAGGATGCCC             GAGGTGGT ATG ACGACTTC             TTTTTCTTCGCAAGA  78 141
JTM80_RS09135 2175634 .. 2175647 +  -2.3  -3.24708   CAAGCCTCTCTCATA               GCCTG TCTA CAGCC                TGTCTTTAGAAGATA  44 59
JTM80_RS09140 2176009 .. 2176023 +  -2.1  -2.77222   CGCCCTAGATTAGCC               CTTTG CCGAT CAGAG               CTTTGACCTGGTGGT  39 28
JTM80_RS09145 2176459 .. 2176469 +  -2.4  -4.19238   CATCCCTTAAGGAGA                 CGGC GCG GGCG                 TTTTGAGCTTGGGCG  57 103
JTM80_RS09155 2179654 .. 2179669 +  -2.6  -2.58812   TGGCAAAATAACGTC              GATCTCG GTG CGA-ATC              TCGGTTGCGTTTGAC  39 30
JTM80_RS09160 NONE
JTM80_RS09165 2181219 .. 2181244 + -11.1  -4.66537   TCTTGCCCAAAAAAA         GCCTCGGCGGA GAAT TATGCCGAGGC          TTTTCTATTCAACGG 100 191
JTM80_RS09185 2187721 .. 2187779 +  -6.2    -3.441   AAGAACGAAAAGAGG GAAGAGCGAAGAAGGGAAAGAGGGAA GAGCAGG TTTTCGCTTTTCTATTTTCGTTCTTC CTTTTTCCCTCTTCC  57 67
        xylB 2191372 .. 2191387 +  -2.4  -3.53224   GCTCAACTTTATCCG              GCAGTG CGAT CGCAGC               TTTGAAAGAAGGGTC  47 5
JTM80_RS09205 2192224 .. 2192244 +  -4.6  -4.25104   CGCAGGGTTTCGATG            CCCAACTC AGCCA GGGATGGG            TTTTGCTGACAAAGG  64 230
JTM80_RS09220 2196552 .. 2196566 +  -4.2  -3.50572   AATCACCTGGTAAGC               GGCGAT CGG GTCGTC               TTGTGTCGCGTCAAT  51 295
JTM80_RS09230 2198404 .. 2198429 +  -9.7  -3.97947   GGTTTCAGCATTTTG         GAGATTAGGGG TCAG CCCCTGCTCTC          TTTATCCTGCGTAGC  80 18
JTM80_RS09240 NONE
JTM80_RS09245 2200987 .. 2200999 +  -3.3  -3.07816   GCAAGAGCTGGATTA                GGCTC TAT GAGGC                TTCAATCCATGCCCC  44 25
JTM80_RS09250 NONE
JTM80_RS09255 2203098 .. 2203112 +  -2.8  -2.75769   GAAGCGCCTTAGCAT               CCTG GTTTGCA CAGG               GTTCTGGTTTGCACA  41 29
JTM80_RS09260 NONE
         rnc 2204676 .. 2204706 +  -9.8  -4.54727   CCTGCACTCAATAGG       TGCTTGAAACTTGC GCC GCAGGTTTCGAGAA       TTTTGATTTGGAGGA  90 85
JTM80_RS09270 NONE
JTM80_RS09275 NONE
JTM80_RS09280 2208233 .. 2208246 +  -2.3  -4.13561   CCGCCGCCAGCATCT               CGTCT GAGA AGTCG                TGTTTTTTGGCCACA  59 500
JTM80_RS09290 NONE
JTM80_RS09295 2212073 .. 2212093 +    -4  -3.70902   ACAGTCGATTCAGAT            CCAGCA CTTGCCCGC TGCTGG            TTTCCATATAGCAAG  54 427
JTM80_RS09335 2222270 .. 2222280 +  -6.8  -3.29511   GTGGTGTCGGGGCGA                 TCGC CCT GCGA                 TTCTAGCGGCGTGAG  58 241
JTM80_RS09345 2224957 .. 2224973 +  -2.9  -4.08767   CACCTGCGGATAGAA              CGCGC CGGGATA GTGCG              TTTTCACAAAGTCCA  58 385
JTM80_RS09380 2233071 .. 2233089 + -13.2  -3.54424   AAACCGATCCGGAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCGAC  86 138
JTM80_RS09385 2233911 .. 2233939 +  -5.2  -2.77501   CCCACCAACGCCTGA        CCCATAGACAGT ACGGA GCTGTCTCAGGG        CTTTGCCGATTGTAT  48 236
JTM80_RS09390 2234236 .. 2234248 +  -3.3  -3.07233   CTCAGACCGACCATT                GCCTC AGT GAGGA                TGTTGCCCCTTCTGG  44 60
JTM80_RS09405 2238387 .. 2238409 +  -8.4  -3.21276   CGAGCTGGGGCTGAA           TCGCTTGCAG CGT CTTCAGGCGA           TCTTCTACAAACCAG  63 296
JTM80_RS09415 2242791 .. 2242810 +  -6.4  -2.64274   TCGGCTGCCAGTTGT            CATCAGCC TGCT GGCTCATG             TAGGTTTGCAGACAT  48 173
JTM80_RS09425 2245039 .. 2245069 +  -5.4  -4.18018   GACAGTTCAATAAAC      CTG-GTCGTCCCC ATTCTC GGAGGCGACCCAG       TTTTCGCTGCCCCCG  66 449
JTM80_RS09430 2245694 .. 2245714 +  -4.8  -4.17657   TCTGCTTGCCGCCAT           CTGCTTAGC TCGG GCTAA-CAG            TTTTGCAGTATCCTC  63 404
JTM80_RS09455 2250639 .. 2250655 +  -5.9  -3.87815   TGTTGAATAACTATT              TCGAGTT CAA AACTTGA              TTTGTGCACCTCGAA  64 31
JTM80_RS09460 2251411 .. 2251424 +  -3.1  -3.66908   TTGCTTGGACACAAT               CGAGAG AAG CTC-CG               TTAATTTTGGGGCAC  52 330
JTM80_RS09470 2252034 .. 2252089 +  -9.4  -2.63817   GGCGTAGAGCAGGGC CCCGCGCTGGCGTTCGTGATGGTCGG CAAT CCAGCCAACGCGATCGCCCGTGCTGC CTGTTGTTGCAGCTT  60 350
JTM80_RS09480 2254657 .. 2254685 +   -19  -2.82208   AATGCCGACAAAAAA        TCAGGGGTCGGA AACCC TCCGACCCCTGA        TCTGATGCCTGATTT 100 63
JTM80_RS09495 2259376 .. 2259390 +  -6.4  -4.37886   TGGATAGCCACAGCT               TTGCTG AAG CAGCGA               TTTTGTGGGCAGTGC  71 157
JTM80_RS09530 NONE
JTM80_RS09535 2266237 .. 2266251 +  -7.1  -3.09516   CATTTGCGCCATGCT               GCCAG GAATG CTGGC               TTCACTCGTCAGCCA  54 159
JTM80_RS09545 2267467 .. 2267477 +  -4.6  -2.91582   CCAGTCCATTACTGA                 TGCC ATC GGCG                 TGTCTCGCTAAAGTA  47 4
JTM80_RS09570 NONE
JTM80_RS09575 NONE
JTM80_RS09580 2274467 .. 2274491 +  -7.8  -2.71712   GTGACGGGGTGATAA         GGCGGTGGGGC TGAA GTCCC-TCGCC          CTTTGGGAAAGGGAG  56 29
JTM80_RS09590 2277131 .. 2277149 +  -8.8   -3.5627   GGACTGCCTCAGTAT             CCTGGCGT TTT GCGTCAGG             TTTGCCCCATGCTGT  66 388
JTM80_RS09615 2281371 .. 2281383 +  -6.9  -2.78596   GTGAAAGATGTCGCC                CGCGC CCA GCGTG                TCTACTGGGGAAATG  51 232
        psbQ NONE
JTM80_RS09630 2284196 .. 2284216 +  -7.5  -3.01791   TGAAGTTAGACAAGT            CGCCAGCCA GGT TGTTTGGCG            TATTCAGCGGCGAAT  53 81
JTM80_RS09645 2290580 .. 2290597 +  -3.3  -4.07568   CCGAGTTTTTGCATG             ACACGCT GTGA GGCGTGG              TTTTCGGGCCGGGCG  58 212
JTM80_RS09660 2294154 .. 2294168 +  -2.8   -5.2112   TACGGGGGTCAAACG               TCCG GCTATCG CGGA               TTTTTTCGTAGTATT  81 462
JTM80_RS09690 2300828 .. 2300866 + -14.1  -3.79906   AAAAGGTATAGAAAA  GGTTGGCTTTTCG-GG-CG TTT CGACCTCGAAAAGTCAACC  TTCTTCTACGCATCA  93 60
JTM80_RS09700 2302720 .. 2302733 +  -3.8   -3.1355   GATGCGATAGATTAG               GGGT TGGGCC ACCC                TTCAATATCCGTAGC  46 85
JTM80_RS09705 2303216 .. 2303229 +  -3.9  -3.16742   AGCTGATCAGAGCGA               TTGAT CCCA ATCAA                TTGATCCCAATTGAC  46 50
JTM80_RS09730 2306764 .. 2306795 +  -7.8  -3.53811   CGTGGGCGCAATGTA      GGGCAGGGGCGATC GCCC GTTTGCCCGCGCCC       TTTAGGGCCGATAGA  64 25
JTM80_RS09740 2309181 .. 2309216 +   -14  -3.59031   AAAGCACATTAAAAA    GCCGAGTCCTCCAGAGC TGA GC-CTGGGGCGCTCGGC    TGTTTGATTGGTTCA  89 173
JTM80_RS09755 NONE
JTM80_RS09760 2312504 .. 2312530 + -15.2  -3.30124   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCCACGAGAAA         TTGTCCAAAATCCAG  90 401
JTM80_RS09765 2314047 .. 2314060 +  -3.8  -3.53012   GGGGGTTAATCCATG               CGCT TGTTCC AGCG                TTTCGGGAACGAAGG  51 523
JTM80_RS09775 NONE
JTM80_RS09780 NONE
JTM80_RS09785 NONE
JTM80_RS09790 2316957 .. 2316968 +  -2.2  -4.59773   TTCGCTCTTGTATTC                GATC AGCG GGTC                 TTTTTGACCATAGCC  66 282
JTM80_RS09800 NONE
JTM80_RS09805 2322736 .. 2322749 +  -4.5  -2.75562   GCTCGGCCAAAAGGC               GGG-CG CGG CGACCC               ATTTCGCGGGTTTCT  44 156
JTM80_RS09850 2333873 .. 2333883 +  -4.6  -3.29511   ACGTCCTCACCGAGA                 GCTG ATG CGGC                 TTATAAAACGGTGCA  49 369
JTM80_RS09875 2342035 .. 2342057 +  -3.4  -3.86015   CTTAACTTCTGACCC           TTAACCCTGA GTC TCAGAGCTAA           TTTATGAAGCAAATC  54 43
JTM80_RS09880 NONE
JTM80_RS09885 2345238 .. 2345252 +  -2.8   -4.2679   ATGCGCTCCAGAGTT               TCAACA TGG TGTCGA               TTTTGGTGCCAGTTC  64 479
JTM80_RS09895 2347221 .. 2347237 + -10.1  -3.01791   GATCTTGTGTTGATC              CTGGGGC ATT GCTCCAG              TCTTGGAGGCACAGT  67 500
JTM80_RS09900 NONE
JTM80_RS09905 NONE
JTM80_RS09910 NONE
JTM80_RS09915 2349968 .. 2349983 +  -4.6  -4.65747   GATCTAACAGCTTCC              GAACCC AGAG GGGTGC               TTTTCTTGCAGATTC  70 99
JTM80_RS09930 NONE
JTM80_RS09935 2354615 .. 2354641 + -11.6  -3.48276   TACGCAATTGGACAA         TTTCTCGCGGGC TAC GCTCGGGAGAAA         TTGTCTAAAACCCAG  77 107
JTM80_RS09940 2356022 .. 2356062 +  -4.8  -5.70829   AAGCACTATCACGGA TGAGGGTTATGGACTG-CT GCAC AGTCAGTTTGTATCCCTCG  TTTTTTTGTCCTATT 100 156
JTM80_RS09945 2362121 .. 2362134 +  -5.3  -3.74251   CCACTGCTGTTGCAG               TTGCA AGCC TGCAA                TTTCCTAAGCATGTA  59 92
JTM80_RS09960 2367950 .. 2368008 + -15.5  -3.41229   TTGCGATTAAATTTT C-TGGGT-TTTGGACGATTTCTCGCGGGC GCA GCCCGCGAGAAATCGTCCGACTGCGTAAG TTCTAATGGAAATCT 100 486
JTM80_RS09965 2369610 .. 2369632 +  -2.6  -4.86033   TAGTTAGCCACTGAC           TCAAGCTGTT AAT AGCAGCGTGC           TTTTTATCACACTTT  68 416
JTM80_RS09980 NONE
JTM80_RS09985 2372547 .. 2372573 +  -4.2  -3.73647   GGCGAGGCGATCGCT         GTCGTGGCGCAC CAG GCCCGTCTCGAC         TTCTTCGTCGATGAC  54 98
JTM80_RS09995 2375772 .. 2375790 +  -3.8  -3.53444   TCAGGGATTTCAACT             CCTGTGTT GGT AACGCAGA             TTTGGAAGAGGGTAG  51 340
JTM80_RS10010 2382493 .. 2382518 +  -8.1  -4.82901   CATTTGTATGAACTT         GCCGCTCCCGC ATTC GCAGAGGCGGC          TTTTTGTGGGGCGGG  87 54
JTM80_RS10015 2384108 .. 2384162 + -10.9  -3.77264   ATGAAGAACGAAGAA CGAAAAATGAAGAACGAAAAACGGA CTCTC TTCGTTCTTCGTTCTTCCCTCTTCG TTCTTCCCTCTTTTC  80 59
JTM80_RS10030 2389114 .. 2389139 +  -3.2   -2.6187   GCGTCTGCGGTTAGC         TCCGCCTGCT AGGGAC AGCAATCGGA          TCGATTCTGGATTGT  40 14
JTM80_RS10035 2389913 .. 2389953 +  -2.6  -5.09895   AAGAAAAACGAAAAT  CGAAGAACGAAAACCGAA ACCTC TTCCTTCTTCGTTCTTCC  TTTTTTCCCTACGTG  74 63
JTM80_RS10050 2394087 .. 2394129 +  -5.7  -2.86164   GCTGCTGCTCCGCTC TGC-TTGGAGACGACTCCGAT CTG GTTGGAGATG-CTCCAATGCA TCTAGTGCTTACCCC  51 346
JTM80_RS10055 2395931 .. 2395941 +  -5.4  -2.59564   TACTGCTAGACCCTA                 CTAG ACC CTAG                 CTTCTGAGATCCGGC  47 164
JTM80_RS10060 NONE
JTM80_RS10065 2397238 .. 2397250 +  -3.3   -4.8622   TCAATCATGTACTGT                TGCAG TTG CGGCA                TTTTTCCTTGAGGGA  73 121
JTM80_RS10075 2400564 .. 2400590 + -11.6  -4.77036   CAAGTCATCGGAAGA         TCGCTGTGCAGT TAG GCTGTGCAGCGA         TTTTTACTGATGAAA 100 132
JTM80_RS10095 2404359 .. 2404373 +  -2.8  -4.28651   TCGTTCTTCCCTCTT               CCCT CTTCTCT AGGG               TTTTAGAATTTTGCT  61 126
        cobJ 2406307 .. 2406325 +  -5.3  -4.57837   GGAACCTGAAAGCGC            CTTG-GGC GATC GCCTCAAG             TTTTTCAGAAAATAT  71 32
JTM80_RS10105 2406703 .. 2406728 + -11.1  -2.84878   GAATATTTGCGGAAA         CCGTCGTGCAG GCTG CTGTGCGGCGG          CTTTACGTTAGAGCG  71 99
JTM80_RS10110 2407879 .. 2407891 +  -7.7  -3.74542   CCCGATTGACGCACA                CACGA TAG TCGTG                TTCTTCAATCTTATA  66 503
JTM80_RS10120 2409553 .. 2409567 +  -2.8  -5.12707   GCGATTTGACAATTT               TTGACA ATT TGACAA               TTTTTTAGAGTTTGG  76 212
JTM80_RS10125 2410474 .. 2410494 +  -5.5  -2.69151   CTCATTCACCCAATG            TTCACTGAA TAC TTCACTGAA            TACTATGTCCACCGA  47 91
JTM80_RS10130 2411260 .. 2411276 +  -4.4  -3.04122   CAGCATGGATGCCTG             CA-CCGC ATGG GCGGCTG              TAATTTCTAATGACC  47 175
JTM80_RS10140 2411622 .. 2411643 +  -3.5  -4.11751   CGGGGGATGACGAAA           CGCCGCAGC GTCG GCAGTAGCG            TTTTGCGGGCTTCAT  59 6
JTM80_RS10145 2412641 .. 2412673 +  -5.3  -2.98282   CGGGTGGCATCGCGT      CGCCTGCCCACGCCT AGC AGGAGGTGGCTGGTG      TATCTGCTGATTCCT  49 9
JTM80_RS10150 2413830 .. 2413878 +  -7.4  -2.53271   GAGATAAAGCTCTGG CGGCTCGCCCTGAAACTGTCCTG CTAG CAGG-CAGTTGCAGGAAAAGTCG ATCTTGTCGCGCTCC  50 486
        puuE 2416940 .. 2416953 +  -2.3  -3.77588   TATCAGAAATAGGGT               TAGCC CGTA GGCAA                TTATTGCTATCGGAT  50 229
JTM80_RS10170 2417363 .. 2417404 +    -6  -4.72729   TTTTGAACTTAAAAC GGGCTGTCTTTTCG-AG CAATTAGCT CTGTGAAAAGGCGGCCC TTTTGGTTTTAATTG  76 65
JTM80_RS10175 2418481 .. 2418533 + -20.1  -5.00884   GTTGACTTTTGATTA GTGCGATCGCCCAGAT-AGCTTGC CAAGCA GCAGGTTCGTCTGGGCGATCGCGC TTTTTTGCGAACCCT 100 68
JTM80_RS10180 2419386 .. 2419423 + -11.4  -4.66535   TCATCCAGTTCGGTA   GCGCCGTTGG-GTCT TGCTCTCTC AGACTCCGACGGCGC   TTTCTTTTGGAACTT 100 91
JTM80_RS10185 2420411 .. 2420441 +  -5.3  -3.08224   GTTTGCAACCCCTCT       TCGCCCGCCAGAT CGGCA ATCGTGCGGGCAA       CTTTTAGGATGCGAT  49 130
JTM80_RS10195 2424056 .. 2424074 +  -4.4  -4.56597   GCTGGGCTGCACAAC             GCGCCGCT TTT GGTGTCGC             TTTTTGAACCAGGGG  72 347
JTM80_RS10260 2441403 .. 2441425 +  -4.2  -4.13282   TTGCGGTGACATGCG           CTTAGTTTAA AGA TTAGACGAAG           TTTTACCGCTGTCGT  63 150
JTM80_RS10265 2442258 .. 2442286 +  -8.8  -5.45802   TGGAGTTGTCAAAAG        CCTGGAGTGGTC AGTGC GATCGCCCCAGG        TTTTTGTTTTGAAAC 100 118
JTM80_RS10270 2442764 .. 2442780 +  -6.6  -2.71924   GTATGAGCTAATCTC              TTGGCT CTCTC AGCCAA              ATTTGACAGAACCTC  53 44
JTM80_RS10275 2443272 .. 2443288 +  -5.9  -4.27316   TAGTAAGTAGTGCTG              CTTAGGT TGG ATCTAAG              TTTTGAATTGGGCGA  68 48
        rpsG 2444161 .. 2444173 +  -4.1  -4.09243   TCTTCTGAGGTGAAA                TCGCA CCT TGTGA                TTTTCAAGGGGTGTG  59 89
        fusA NONE
         tuf 2447670 .. 2447711 + -12.4  -4.09864   AGTAGTTCCTTTTGA GCGCTACTCCGGCTTT TTCTGGATGT GAGGCCGGAGTAGTGC  TTTTAGAGGGTCAAT  90 36
        rpsJ 2448174 .. 2448210 +  -8.1  -4.83759   ATGAGCTATGAAATA    TTTCTGGAGAGTGGTGT TTA GTAGCGCTTTCCAGAAA    TTTTTGCATTTGGTT  87 97
JTM80_RS10300 2449665 .. 2449695 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS10330 2457510 .. 2457526 +  -3.7  -3.08464   CTTGCAGAGATGCCT              TGCAGAG ATA TTTTGCA              TTACATGGGTCGTAA  46 76
JTM80_RS10335 2458847 .. 2458860 +  -2.3  -4.30576   TGTTTGTCAGATAAA               TCTGC ATTT GCAGC                TTTTGGTGCTAAAGG  62 337
JTM80_RS10350 2461230 .. 2461245 +    -4  -3.29511   TCAGTCCGTGGTTAT              CG-GTCT TGG AGACACG              TTATACCCAACTGGA  48 163
JTM80_RS10355 2462137 .. 2462153 +  -6.5  -3.64703   ACCGTGCCGTCTGGT              GTGACGA AGT TCGCCAC              TTTGCCTGCCGCCAC  61 312
JTM80_RS10365 NONE
JTM80_RS10370 NONE
        lptC 2466709 .. 2466723 +  -5.6  -2.77999   AGCGGTACGTTTCGT               GCTGGG TCG CCAAGC               TGCTGTTGATAGATG  48 118
JTM80_RS10385 2468824 .. 2468846 + -10.6  -4.36914   AATAATCGCAAAGCA           GTCCTGAGGA CTA TCCTCAAGAC           TTTTCTGAGGACAAA  89 56
        cbiT NONE
JTM80_RS10410 2476265 .. 2476284 +  -4.3  -4.46072   TGCCGCTGCTGCCCG            CGTAGGA CAGAAA TCCTATG             TTTGTCTTTGTTAGG  68 21
JTM80_RS10415 2477500 .. 2477515 +  -7.6  -3.11208   ATTAGTTAATCTATC              TGCAAG TTTT CTTGCA               TGGTTTTGCCTGAGA  59 135
JTM80_RS10420 2478462 .. 2478477 +    -4  -3.45839   TGCAAGTCAACTCCA              GCAGCAC GTC GT-CTGC              TTAATATTTCGCAAT  50 139
JTM80_RS10425 2479489 .. 2479501 +  -3.3  -2.88044   CCTTGCAGATACGCT                CCGCT TTT AGAGG                GTGTTTTATGGACTG  42 337
        gloB 2489464 .. 2489480 +  -3.7  -5.40474   CCTTATTTGTTGGGG              CTTTCAA GTT TTGGGAG              TTTTTTTGAGAGAGT  85 130
JTM80_RS10470 2491471 .. 2491489 +  -5.2  -2.70932   AATCTAGGTTTGGTT             CATGGGCT ATT AGCTCAGG             TGGTTAGAGCGCACC  47 140
JTM80_RS10475 2491546 .. 2491559 +  -2.3  -3.28791   GAGTCCAGGATGGCC               CACCT TGAA AGGAG                TTGTGGGCGAAGAAT  44 23
JTM80_RS10480 2491901 .. 2491919 +  -6.6  -4.51743   AACTTGCTTAGAATG             CAGCTTGC TTA GCAGGCAG             TTTGTTTAGTAGTCC  76 77
JTM80_RS10485 2495082 .. 2495097 +  -6.2  -3.89346   CCTCTTTTAGCGGGG              TCTTCT GGAA AGAAGA               TTTCTCGCGTGGAAG  64 102
         rrf 2495266 .. 2495296 + -13.3  -4.50159   AGGGCGATAATACAA      C-CCCCCTCGGATG TAAT CACCCGAGGGGGTG       TTTGTTTAAATTACC 100 37
JTM80_RS10550 NONE
JTM80_RS10555 2532549 .. 2532562 +  -2.3  -3.53012   GCGATCACGCAGAGG               AGCCA GCGT TGGCG                TTTCAACAGGCGGGA  47 244
        raiA 2536551 .. 2536580 + -11.4   -4.4267   TTTTAACAGGAAAAA       CGGGAGTCCAGC AGTTTC GCTTGGCTCCCG        TTTTAGGTTTTAGCA  91 169
JTM80_RS10580 2539039 .. 2539063 + -14.3  -4.02817   TCGCGTCTATACAAA          GCGAGGGGGCA CAA TGCTCTCTCGC          TTCTTCTTATAACGG 100 143
JTM80_RS10590 2539864 .. 2539899 +    -6  -3.85817   ACGACTGACACACCC    TACGCCA-CAGGGGATG CCT CGGCCCCCGCTGGCGAA    TTTCTAGAACGCGCT  64 70
JTM80_RS10625 2546958 .. 2546988 +  -4.6  -5.03747   GGGTATGCTCAAATA       GACCACTTTCCCGG TTC TCGGTAAAGTCGCC       TTTTTTGCCCCGTTT  76 2
JTM80_RS10630 NONE
JTM80_RS10635 2548293 .. 2548312 +  -2.1  -4.25104   TCTGGATCATCAGGC            GCACGTCC CAAGT GGG-GTGC            TTTTGGTAGAACAAC  59 278
JTM80_RS10650 2551075 .. 2551089 +  -2.8  -2.60244   AATTTAATTTATCTA               GTGGAT TTG ATCCAG               TGAATTAGTTAAGGA  40 385
JTM80_RS10655 2551644 .. 2551657 +  -5.9   -5.0916   TGAGGAACCTTCTGA               GGCGC TCTA GCGTC                TTTTTCTCTTAAAAA  86 165
JTM80_RS10660 2552464 .. 2552500 +  -4.2  -4.07568   ATCCCTCTCCCAAAG    CGGGAGAGGGACTTCC AATCC GGCTCCCCTTCTCCCG    TTTTGGGAGAAGGGG  61 118
        lptB 2553465 .. 2553475 +  -6.8  -2.66249   CTCCAACCCCCCGAC                 CCTG CAA CAGG                 CTATTCTTCCTCAGC  52 112
JTM80_RS10670 2555024 .. 2555042 +  -7.3  -2.81413   ATGACCAAATAAAAA             CCCCGCC TTAAC GTCGGGG             TAGTGTTGCTTGATG  51 331
        rpsD 2556502 .. 2556529 + -12.1  -5.30616   TTGATATAGGACAAA        CCTCCGATGAT CCGTCA GTCATCGGAGG         TTTTTGTTTGACTGG 100 234
JTM80_RS10705 NONE
JTM80_RS10710 2567560 .. 2567570 +  -2.4  -3.94877   TCAGGCGAATTCCGG                 CTGC GCT GCTG                 TTGTTGTTCACCACT  56 352
        ureC 2579094 .. 2579109 +  -7.6   -2.9462   TTCAGCTTCATATTC              CCGATT GCCG AATCGG               TCATTTGCATAGGTC  57 54
JTM80_RS10735 2580171 .. 2580203 +   -12  -5.40072   GTGCGCTCGGTGCGT      TAGGGTGGGGATGG GGTTG CCGTCCTCACCCGA      TTTTTTTGGAGGGAG 100 323
JTM80_RS10740 NONE
JTM80_RS10745 2582053 .. 2582065 +  -5.5  -3.44325   GTTCCGGAAATCGCA                TCGCG TGA CGTGA                TTACTTCTAGCGGCT  53 133
JTM80_RS10760 2584029 .. 2584052 +  -3.8  -3.44146   CCAGAAGAAAACATT          CCGCAGTAAA AGCG TTTGTGGCGG           TTGGTTCTAAACAAC  50 17
JTM80_RS10765 2586861 .. 2586872 +  -2.2  -4.07568   ATGCGAAAGGCGCGG                TCGG TGGC CTGA                 TTTTCCACGGCGGGG  56 467
JTM80_RS10775 2591060 .. 2591083 +  -8.9  -3.60475   AAGCCAGATTGGAAG          TCCCTCTCCC CCTTT GGGAG-GGGA          TTTAGGGTGAGGGTT  70 226
JTM80_RS10795 2595391 .. 2595411 +  -3.9  -3.25169   GAACTCGCGGCTCGT            GCGGCCA TTTCCTT TAGCCGC            TTAATCCGTTCTTCA  47 225
JTM80_RS10810 NONE
JTM80_RS10815 2599473 .. 2599495 +  -2.6  -4.21607   TGCCCGATGAGCTTG           ATTTCCTCCT CGA AGGAGGAGCC           TTTGTATTCGGTGCG  59 232
        uvrB 2602348 .. 2602360 +  -4.7  -4.38712   AACCTGGTTCAAAGC                GGGGG TAT CCCAC                TTTTGTAACCCTCAC  66 154
JTM80_RS10830 2604056 .. 2604072 +  -2.1  -4.07568   ATCTGGATAATCACC              GCGCCGA CGA TCAGCAC              TTTTACACCCAGCCA  56 405
JTM80_RS10875 2615331 .. 2615342 +  -5.8   -3.5936   GGCGATCGCGCTCCC                GCTG GACA CAGC                 TTTAGCCGCTTTCCC  59 9
JTM80_RS10890 2620246 .. 2620260 +  -5.6  -3.72695   GGGTGGGTACGGCGC               TGGCGC TGG GGGCCA               TTTCGTCGGCAAACT  58 242
        psbD NONE
        psbC 2628325 .. 2628347 + -12.7  -5.15117   GCTGAACTTTGTAAG          CGCCCCCTGC GATT GC-GGGGGCG           TTTTTTACGCTTTTC 100 79
JTM80_RS10930 2630927 .. 2630941 +  -4.2  -3.35522   AGCTTGTCTAGGAAA               CGTGTC TGG GAAACG               TGTTTGGGAACGTTA  52 76
JTM80_RS10935 2631436 .. 2631452 + -10.9  -2.62983   TTGAACTCATGACCT              CACCCTT ACC AAGGGTG              TGCTCTACCACTGAG  66 236
        ureE NONE
JTM80_RS10960 NONE
JTM80_RS10965 2635846 .. 2635892 +  -4.3   -3.5394   TTTTTGACCATCGGA TAGCAGGGACGAGG-AGTTGGC TTGT GCCCCTTGCCTCGTCCTGGCGA TTTACCACGAGGTTT  54 202
JTM80_RS10975 2638748 .. 2638768 + -13.3  -4.95957   TTTGTAGAGTGAACG            CCTGGGTAC ATC GTGCCCAGG            TTTTTACTTCGTTTC 100 46
JTM80_RS10980 2639855 .. 2639865 +  -3.2  -3.62756   GCAGAATAAGGGCAC                 TCGT TCT GCGA                 TCTTTAGTTTGGACT  49 32
JTM80_RS10985 2641298 .. 2641328 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS11000 2646578 .. 2646612 +  -7.9  -3.02511   CTACTCTGCCGGAGC    CGTCCAC-CAGGCC AGGGCGTA GGCTTGGGTGGGCG     TGTTGACGCGATCGC  57 216
JTM80_RS11050 2663025 .. 2663041 +  -3.8  -4.07246   TGGCTGCTTCAGAGT              TTTGTT TTCTT AACAAA              TTTCGTTTGAACTAG  59 341
JTM80_RS11055 2664845 .. 2664875 +  -3.9  -3.44553   AGGGGGCTGGAAACG       GTTGGGTTGCGCG TGTCT TGCACAATCCACC       TTCTCGGATTTTTGA  50 53
JTM80_RS11060 2665910 .. 2665965 + -16.8  -5.23316   GACATTAATAAACAT AAAACCCAAAGACCCTGCGCCGCCCGC TGA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 132
JTM80_RS11065 2667157 .. 2667171 +  -5.8  -3.57731   TGTGTTTTGAGAATC               TTTCTT ATT AAGAAA               TTGTGTGGTAGTTGA  59 172
JTM80_RS11070 NONE
JTM80_RS11075 2668762 .. 2668772 +  -3.2  -4.56597   CGCGGCCGCCCAGCA                 GTTC CGT GAGC                 TTTTTGACCAGCGCC  69 150
JTM80_RS11085 2675113 .. 2675123 +  -3.2  -3.35224   GTGCGTCAGTCCTGT                 CTCT CAG AGGG                 TGTTTGAAAAGGTAT  47 435
        mscL NONE
JTM80_RS11110 NONE
JTM80_RS11115 2683794 .. 2683819 +  -5.3  -3.73072   CTGAGTCCGAGCAAG         TTTGCCGGGCG AGTT TGCCGGGCGAG          TTTGCTGGGCGAGTT  59 138
JTM80_RS11120 2685238 .. 2685279 +  -2.9  -2.75818   GATAAGGTGAATATT GCAGAAGGCAGGG-ACTCCG TTA CGGTTTGTCCTGCATTCTCC TCATCTTGCAATCTT  41 74
JTM80_RS11125 NONE
JTM80_RS11130 NONE
JTM80_RS11135 NONE
JTM80_RS11140 2689633 .. 2689671 +  -4.4  -4.55128   TGCGATGATCCATCT   CCGGAAACTCGTCGGACA GCA TGATGGGCGAGTTGCCGA   TTTTGATTTCGGCGT  70 365
JTM80_RS11150 NONE
JTM80_RS11165 NONE
        adhE 2696710 .. 2696762 +  -8.8  -5.04325   GGCGGACGACTCATA GCCCCCCG-GCGCGGGGCCGGCCCG GAAT CTGGCTGGCCCCGCGAACCCGCCGC TTTTTCTGATTTCAG  93 25
        pflB 2699335 .. 2699361 + -10.9  -3.30124   TACGCAGTTGAACAA         TTTCTCGCGGG CTGCA CCCGCAAGAAA         TTGTCCAAAATCCAG  73 233
        pflA 2700570 .. 2700616 +  -4.3   -3.5394   TTTTTGACCATCGGA TAGCAGGGACGAGG-AGTTGGC TTGT GCCCCTTGCCTCGTCCTGGCGA TTTACCACGAGGTTT  54 395
JTM80_RS11190 2703091 .. 2703112 +  -5.1  -3.61268   CATGGTTTGTGTGAA           GTGATGCGA TTTG TAGCGTCAC            TTTGGCAATTCGATG  56 127
        ppsA 2706067 .. 2706100 +  -5.4  -4.98616   GGAAAGAGAGAAGAA     CGAAGAGCGAAGAG GTTCTG TTTTTCGTTTTTCG      TTTTTCGTCTTTTCC  79 81
JTM80_RS11210 2709357 .. 2709374 +  -2.8  -4.58663   GAATCAGACTAGTAA             TTTCTA AAATTC TAGAAA              TTTTTCAGAACTCAT  64 322
JTM80_RS11215 2710156 .. 2710187 + -10.9   -4.1552   TTACCGAGTCAGAGC      CATAGCCAGAGTC CTGAGT GGCTCTGGCTAAG       TTTCTTAGAAAAGTA  88 316
JTM80_RS11220 2712681 .. 2712695 +  -2.8  -3.54424   TGAATCCTGGTGCGG               GCGA TCGCTAC TCGC               TTTGAACGGCTCGAC  49 6
JTM80_RS11235 2714869 .. 2714890 +  -2.2  -4.26076   GGTCTGGGCAGCGGC           GACG-GCGC GATAG GCGCTCATC           TTTTGATCCAGGTCG  62 405
JTM80_RS11245 NONE
JTM80_RS11250 2720919 .. 2720974 + -16.8  -4.83269   GACATTAACAAACAT AAAACCCAAAGACCCTGCGCCGCCCGC TGC GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTAATCTGGTCT 100 64
         nei 2722478 .. 2722504 +  -3.7  -4.56775   AATCCCCCTTAAAAA         GGGGGGA CTTTAAGGCGGTT TCCCCCC         TTTTTAAGGGGGGCT  66 92
JTM80_RS11260 NONE
JTM80_RS11265 2725780 .. 2725790 +  -6.8  -3.53012   CAAACCTCAGCACTC                 TGCC CCT GGCA                 TTTAGCACCGCAAGC  60 411
JTM80_RS11275 2727201 .. 2727248 +   -25  -4.89838   AGATTAAAAAACAGA TCCTGA-ACCTTGCGCCGCCCGC TGC GCGGGCGGCGCAAGGTCTTTGGG TTTTATGTTTATTAA 100 75
        alaS 2735780 .. 2735793 +  -6.7  -3.21276   TCACTAGGTCAGGCT               CCTGA GCCG TCAGG                TATTCTGCCACAGGA  54 460
JTM80_RS11305 2738236 .. 2738249 +  -2.3  -2.78505   ATGGCCCCTGGTACT               GCTAG AATC CTTGC                TCATCTTGCATTCTG  39 136
JTM80_RS11310 2740765 .. 2740777 +  -4.7   -3.9941   TGCTCGTTCCAGATG                ACGGC CAC GCCGA                TTTGCTTGTGGGGCA  62 503
JTM80_RS11340 2744739 .. 2744775 +  -7.9  -4.66537   CATTCTTTTTGAGCG    GCGGGTTTTGGCAGC GTTTAGA GCAGTCAATGCCCGC    TTTTCTATTAGAAAA  82 260
JTM80_RS11345 2746563 .. 2746618 + -16.8  -5.23316   GACATTAGCAAATAT AAAACCCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 48
JTM80_RS11350 NONE
JTM80_RS11355 2748428 .. 2748442 +  -5.7  -2.88544   GAGTTACGGCTTGCT               GCCTT AATAA AAGGC               TATATAGCAATCAAG  52 283
JTM80_RS11360 2750035 .. 2750046 +  -5.8  -2.71011   CGCAACAGCCATGCA                GAGG GATG CCTC                 TCCTTACCCCAGACT  50 72
JTM80_RS11370 2752245 .. 2752257 +  -5.5  -2.62983   TCATTGCGGGGTTGC                CCTAG AAA CTGGG                TAATCTAGAGATGGA  47 78
JTM80_RS11375 2753440 .. 2753453 +  -6.7  -2.74322   CCCTCGTCTCTACAC               CCCAA TCCC TTGGG                ATTTACGCACTTGCG  53 62
JTM80_RS11385 NONE
JTM80_RS11390 2756397 .. 2756413 +  -3.7  -2.72344   CAATTGAAATCCCCT              CAGCT TGGTAGT AGCTG              TAGTTAACGATACGG  43 169
JTM80_RS11400 NONE
        queG 2759831 .. 2759872 + -12.5   -3.8901   GTGCGGGGAGGCGGA GCAGGAGAGGCTGCGGGCA TTAAGC TGCCTG-A-CCTCTCCTGC TTTACTGCTTTACGG  87 473
JTM80_RS11470 2779631 .. 2779645 +  -4.2  -4.12188   GTTCGACCCCTGCAC               CCTGGA TTT TCTGGG               TTTTCAAGATCATCC  61 18
JTM80_RS11475 2780621 .. 2780633 +  -4.8  -3.57144   GGAATACTCGCTCTG                CACC CAACT GGTG                TTTAACAATGGCACA  54 345
JTM80_RS11480 2781559 .. 2781569 +  -3.2  -4.35926   CGGGAGGCGGCTCTA                 TCGG TTC TCGA                 TTTTGGATTTGCGAT  61 138
JTM80_RS11485 2782338 .. 2782366 + -11.7  -4.81249   ATCTAAAAACAAAAA        GACTAGGTTGGGG ATT CCCTCGCCTAGTC        TTTTTGAGTTTGGGA 100 186
JTM80_RS11505 2787093 .. 2787120 + -14.2  -5.25803   AGGCATGTTTTGACG        AAGCCACAGCAC GGGT GTGCTGTGGCTC         TTTTTTGTAGGACTT 100 84
JTM80_RS11515 2790581 .. 2790598 + -10.5  -5.32882   GTTTATTCCAGCAGC             GGCCGCC CCTA GGCGGTC              TTTTTTGTGGTCATA 100 176
        glgP 2795864 .. 2795879 +  -6.8  -3.89938   CGCTTCCCGGCTAGT              CTCCTG CTAG CAGGGG               TTTAGGTTTGATTGT  67 27
JTM80_RS11525 2796655 .. 2796667 +  -2.7  -3.90082   CGCAGTTTCAATGGC                TGTTT TCT AAACG                TTTCCTGATTTCCTA  54 162
JTM80_RS11530 2799205 .. 2799247 +  -9.8   -4.8384   CTTTCAAAGCGCGAT CATGAGTGGCATGGGACAGT CAA GCGTTTCCATGCCGCTCTTG TTTTTAACTTCTTTG 100 88
JTM80_RS11535 2802021 .. 2802051 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS11540 2805066 .. 2805082 +  -3.6  -4.07687   AATGGGGCGGCCGTC              GTCGCG GATGA CGCGAA              TTTTGGCGAAGCGCT  60 467
JTM80_RS11555 2808003 .. 2808015 +  -2.7  -3.90744   TTCGATGGGTCGGTT                TCATA GAG TGTGA                TTGTTTAAGCCAAGA  53 456
JTM80_RS11565 2808916 .. 2808928 +  -6.2   -2.7555   AAAGCCCTTCCTACA                GCGC CAACA GCGC                TAATCTTCCCGTATC  51 68
JTM80_RS11575 2810813 .. 2810823 +  -2.4  -3.78329   TGCTGCTGAGTTCTG                 CCCG CAC CAGG                 TTTGCATTGCTGAGA  51 210
JTM80_RS11590 2816907 .. 2816919 +  -5.5  -3.58343   AGGTAATAGATTGGT                GGGCA CAG TGTCC                TTTGAGCGTCATCAG  56 128
JTM80_RS11595 2819577 .. 2819592 +  -6.1  -3.54488   CCGTCGCAGGGGCAT              TCCGC ATTTTG GCGGA               TGTTGTTTCGGGCGA  59 136
JTM80_RS11600 2823570 .. 2823585 +  -2.6  -3.04203   CCGTGCTTGAGGCAA              GA-CTTG AGG CAAGATC              TGATTTATGAGTTCC  42 0
JTM80_RS11605 NONE
JTM80_RS11610 2826816 .. 2826843 +  -4.8  -4.15044   GGTCAACGGTAAATA        GGGCAATCAGCTG AAG CAG-TGTTCGCCC        TTTATTGACGGCACC  64 494
        rarD NONE
JTM80_RS11635 2831688 .. 2831708 +  -3.9  -3.82262   CTAGACGGCTCAAAC            CGGCTTTAG ACC CAAAAGCCC            TTCTTCCTTCAGCTT  57 17
        aroC 2834943 .. 2834967 + -10.7  -3.41341   TCCCCTGCAAGCGGG          GGTTTGGGGGA AAG TCCCCCAAGGC          TGTTTGGCTCGGATT  75 185
JTM80_RS11660 2835984 .. 2836007 +  -5.2  -3.16813   CCTTCAAAATAGCTG          CGAAGAACGC GATC GCGGTGTTCG           ATTTCTTGCTGATTC  51 457
JTM80_RS11675 2840366 .. 2840396 +  -6.7  -5.00616   GCGGCAAGATAGAGG       GTTGGGGAGTTGG GTTAG CCTGCTCCCCCGC       TTTTTTCGACGGCGG  86 364
JTM80_RS11685 NONE
JTM80_RS11690 NONE
JTM80_RS11695 2843100 .. 2843110 +  -3.2  -3.18105   GTTTTCTGAAGTCGA                 CTTG ATT CAGG                 ATTTTCGTGGATTAG  44 21
JTM80_RS11700 NONE
        nrdR 2844903 .. 2844913 +    -4  -2.65521   AAGCCCAGAAAAAGT                 TTCA CGC TGAA                 CTTACTTGATATACG  43 120
JTM80_RS11715 2846473 .. 2846489 + -12.3  -5.47159   GACGCTTCTGACTGA              GGAGGGA TTG TCCCTCC              TTTTTGTTTGTTAGG 100 171
JTM80_RS11720 2847508 .. 2847520 +  -4.7  -3.14564   GCCGCTCCGGACGAT                CAGCG TGC CGCCG                TTGGTGGAGACATAG  47 265
JTM80_RS11730 2852117 .. 2852164 +  -6.3  -4.39426   TTCAGAAGCTCCAGA TCCGCTTCGGGCAG--GGCA-GCC GAT GGCGTGCCCGCTGTCGGGAGCGGC TTTTCTAGAAATGTA  72 211
JTM80_RS11750 2858562 .. 2858592 +  -3.3  -4.07568   GCTTGCTGCTGGTGG      CTGGTGCGGCTCTA CCCC TAG-GTTGCACTGG       TTTTCCAAAAGCGCA  56 270
JTM80_RS11755 2859832 .. 2859856 +  -2.7  -3.96449   AGACGGTCTAAGGAC          TCTGCTAGCTG ATG CCTCTAGCTGA          TTCTTTGGCATCTTC  54 56
JTM80_RS11760 2861110 .. 2861120 +  -6.8   -2.5955   GAAACGGTGAAGCTT                 CGCT AGG AGCG                 TCCCTTATCAGAAAT  52 31
JTM80_RS11785 2869330 .. 2869371 + -10.8  -2.64651   AAGGCAGTTGGGAGT GTTGGGCGATTCCCGCAG GGATCG CTTCGCGAATCGCCCGCC  TCCGTTTGCCAGCTT  68 440
JTM80_RS11795 2874573 .. 2874598 +  -3.3  -3.72576   ATAGCGATCGCGCTT         TTCTGGGTCTTG CAG CAGGGCC-GGAA         TTTGGTAAAAGCCGG  52 176
JTM80_RS11810 2878492 .. 2878509 +  -3.3  -3.40403   CGCGTTTCGGAGACG             GCCAAGG CTGA TCTAGGC              TTCTGATCGCAGCGC  47 2
JTM80_RS11820 2881289 .. 2881323 + -14.4  -3.77196   GATGCATGGGATGAA     TAGAGGTGGAGCGG TGCATAC CCCCTCCACCTCTA     TTTCATAGGTGATGA  93 88
JTM80_RS11825 2882493 .. 2882550 + -24.7  -2.95918   AGAAAAAAGAAGAAC GAAAAGAGAAGAACGAAGAGGGAAGAA TGGT TTTTTCGTTCTTCGTTCTTCTCTTTTC GTTCTTTAAAAGTTC 100 39
        speB NONE
JTM80_RS11840 2885621 .. 2885672 +  -2.4  -5.95539   CGAAGAACGAAGAAT AGAAGAACGAAGAGGGAAGGGCAGA TCT TCGGTT-TTCGTTCTTCGTTTTTCA TTTTTTTCTTTACGG  95 24
JTM80_RS11850 2893791 .. 2893801 +  -5.4  -3.61232   GGTTGAATACGGTAC                 TCTG TAA CAGA                 TATTTATGTAGACAC  56 210
         gmd NONE
JTM80_RS11860 NONE
JTM80_RS11865 2897193 .. 2897229 + -18.1  -3.91897   TGCTCATAGGGCTTC    CGGTTCAGGTTGTGTGC GTC GCCCATGACCTGAACCG    TTTCTCAATACGCCA 100 32
JTM80_RS11875 2899153 .. 2899175 +  -2.7  -3.54424   GTGAAAAGATTTTTT          GCAGAC-TGT GCCT ACAAGACTGC           TTTCAAAACCTAAAA  49 291
JTM80_RS11880 2900460 .. 2900496 +  -2.2  -4.55128   GGGAGAAATTAAGGA    CTTTGGGTGATGCAGA AGAAG TCCGCACCGTTCAAGG    TTTTAGTTTGAAGCT  62 294
JTM80_RS11885 2903003 .. 2903022 +  -4.2  -4.07568   TGGATTCCCACGCCT            GCTTCAGG ATTT CCTGAGTC             TTTTGGCGCAGCGGG  60 509
        truB 2908497 .. 2908509 +  -6.9  -2.92642   CTGCCCCCATCGCGG                CTCGG TTT CCGGG                TGTGTCGATGATGCT  53 162
JTM80_RS11925 2911912 .. 2911964 + -21.3  -3.79668   TACATAAATGCTTTT CTGAGAGCGTGAATCGTTGGGCGGC GGT GCCGCCCAACGATTCACGCAAGAGG TTTACTGAATTCGCT 100 137
JTM80_RS11975 NONE
JTM80_RS12045 2938298 .. 2938314 +  -6.5  -2.96711   TCGAAAGTCCGTACC              GAGGGTT CGA ATCCCTC              TCTCTCCGTTCTAGA  54 1
        hemF 2940040 .. 2940051 +  -7.2  -3.74251   GTCAAACCGGGAGAT                GGGC GATC GCCC                 TTTAATCAGCGTGTG  63 361
JTM80_RS12065 2941233 .. 2941256 +  -8.1  -5.19261   AGGTTCTTTGAAGGG          GGTGGGGAC AGGTTG GTTCCCGCC           TTTTTTCATGCCTTT  93 83
JTM80_RS12070 NONE
JTM80_RS12075 2943898 .. 2943928 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS12080 NONE
        crtB NONE
JTM80_RS12090 2947650 .. 2947675 +  -6.1  -3.01912   AACTGTAGTCAAATC         CAGCCAATACT AGCC AGGATCGGCTG          TGTGTCTCGATCTGG  52 131
JTM80_RS12095 2949156 .. 2949210 + -18.9  -3.54919   GAACTGGATCGAAAG TCCCCCTTTAATAAGGGGGATTTAGG GGGT CGAAAGTCCCCCTTATT-AAGGGGGA TTTAGGGGGATCGTT 100 252
JTM80_RS12100 NONE
JTM80_RS12105 NONE
JTM80_RS12110 2953050 .. 2953074 + -16.5  -2.58663   TGGGTTTTGGACAAT          TTCTCGCGGGT GCA GCCCGCGAGAA          GTTGTCCAACTGCGT  91 70
JTM80_RS12125 2957081 .. 2957109 +  -5.3  -4.18934   GAGTGCTACAAGCCT        CTCTTAAGCCTCT CTG AGAGATTTGAGGG        TTTGTTGACATGGTG  66 226
JTM80_RS12130 2958361 .. 2958377 +  -3.7  -3.34222   AAGCTGTGTTGTTGA              GAGTTAT AAA GTAGCTC              TTATAGGCTGCTGGT  50 87
        psbU NONE
        nadB 2960883 .. 2960898 +  -4.6  -2.64616   TCAGGCGAACCCAAG              CGCTGG AACT CCAGCC               TACTGTCACTGAGAG  44 292
JTM80_RS12150 2963474 .. 2963492 +    -3  -3.05963   GATGCGTGCTTGCGC             TCGTGCAG TTG CAGCAGGA             TATTGGCATGAACCT  43 92
JTM80_RS12160 2965915 .. 2965930 +  -3.2  -2.87344   AGCTGTGCTGTAAGG              TCGCTG TAAT TAGCGG               TCTGTGAAAACAATC  42 83
JTM80_RS12165 2966674 .. 2966695 + -13.1  -3.54424   GAACTACTCCGGAAG           TCCCCCTTA TTAT TAAGGGGGA            TTTAGGGGGATCGAC  83 322
JTM80_RS12170 2967392 .. 2967403 +  -4.4  -3.25823   TGCTGAGCGCATGAG                GAGT GAAC ACTC                 TTAATCTAAGCCGGG  50 153
JTM80_RS12180 2969562 .. 2969582 +  -4.1  -4.89838   TTTATTGTCTTATTT            TAAGTCT AATAAAG AGACTTA            TTTTCTCTTTATTGG  72 520
JTM80_RS12190 2970800 .. 2970821 +  -7.3  -2.75064   AGCAGCATGATTTAG           GGCAACTGT TAGG ATGGTTGCC            TGGTTGCCTGACACA  56 56
JTM80_RS12195 NONE
JTM80_RS12200 NONE
JTM80_RS12205 2974063 .. 2974089 +   -21  -3.28712   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAAAACCCAA 100 173
JTM80_RS12210 2974401 .. 2974436 +  -8.3  -4.42653   GCATTCCCCAAAAAA    GCTGGCCCTTC-AGCC CATGC GGCTTGAAATGCCAGC    TTTTCTGCGTGGAAT  79 158
JTM80_RS12215 2975272 .. 2975314 + -12.7  -3.65902   GCGAGAAAACAAAAA CACGATGGGTAGACCCTTG CTGAA CTAGAGTCTGCCCATCGCG TTTGGGTGAGATGAA  85 101
JTM80_RS12230 NONE
JTM80_RS12235 2979075 .. 2979096 +  -6.5  -3.06501   GAAACACCACAAACA           GCGGGTGAG TTTC TTCAGCCGC            TTCACTCAGAATGTG  52 239
        grpE 2986348 .. 2986358 +  -3.2   -3.4678   GAATACTTGCTAAGA                 GTTG AAT CAGC                 TTCTGGTCTCCGACT  47 332
        dnaK 2988618 .. 2988641 +    -3  -3.52113   TACGATGTAGGATGT          GGGGAATTGG GTGG CCGAATCGCC           TGTTTGTACGGCGCT  49 234
        dnaJ NONE
JTM80_RS12275 NONE
        rsgA 2991415 .. 2991441 +   -21  -3.31461   TTGGGTTTTGGACAA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 198
JTM80_RS12285 2994649 .. 2994662 +  -2.3  -3.53444   GCAGAACAGTAGCTA               TGGAG CCAT CACCA                TTTACCCCAACGTCC  47 29
JTM80_RS12300 NONE
JTM80_RS12305 3002566 .. 3002596 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS12320 3005782 .. 3005829 + -14.5  -5.00339   TGTTGGAGCGAAGAA TGAAGAGAGAAGAACGAAGAG GTTCCG TTTTTCGTTCTTCTTTCTTCG TTTTTCGTTCTTCGT 100 45
JTM80_RS12325 NONE
JTM80_RS12330 3007317 .. 3007351 + -17.2  -5.33866   CTAAGCCTTCAACTT     CGAGTACGGTCGCCAT CGG AAGGCGGCCGTACTTG     TTTTTTGTAGGTTTC 100 88
JTM80_RS12335 3008645 .. 3008678 + -19.1  -3.75153   CAGATATAAAAACGA     GAGGTCTTGAATTGG AATC CCGATTCAAGACCTC      TTTCAGTTAGAGCAG 100 286
JTM80_RS12345 3016194 .. 3016204 +  -2.4  -3.33744   TCGATGCGGCGGACA                 CGGC CGG GCAG                 GTTTTTGGGAGCGGG  46 300
JTM80_RS12355 3018746 .. 3018760 +  -2.7  -4.58395   GACGGGGAAACTCCG               CCGGG GTAGG CGCGG               TTTTTCGCAAATACA  66 116
JTM80_RS12380 3022586 .. 3022616 +  -3.9  -3.02147   TGGTCGAGGCGATCG       CGGTATTGATGCA GCCCG TGCAGCAGCGCCG       TCTGGTTGTATTGCG  45 208
JTM80_RS12390 3025416 .. 3025463 + -26.4  -4.89838   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCGC TGC GCGGGCGGCGCAGGGTCTTTGGG TTTTATATTTATTAA 100 377
JTM80_RS12400 3026219 .. 3026232 +  -3.7  -3.20841   GCAATAATTTAGGAA               GAGGC GATC GCCCC                TATTGGTGTGAATCT  48 126
JTM80_RS12405 3026953 .. 3026965 +  -9.1  -3.23274   TCGGCAGTTGGGCGA                TCGCC CTT GGCGA                TTACGTTCTAGGCGA  67 104
JTM80_RS12450 3040663 .. 3040684 + -14.5  -5.14563   AAATCACTAAAAAAA           GCTGCTGTG AAAC CACAGCAGC            TTTTTTAGTAAGAAC 100 407
JTM80_RS12465 3045198 .. 3045235 +  -7.7  -4.56775   TGGACAAACTTCAAA   GCGAGATGATGCAGGAGG ATT CTTCGGGCG-CATCTCGC   TTTTTAGCAGCAACT  79 84
        trxA 3045948 .. 3045973 +  -3.1  -3.69216   TAAAGGGCGTTTCGC         GGGGTACGATC ACCA GCTTGCGCCCC          TCTTTTAGCTGCACG  52 264
        recJ 3050219 .. 3050246 +  -5.4  -3.53563   TTGCTGAAGCTGTTC        GCGGGCGATCGC CTCA GAAATCACCCGC         TTTCGCAGGGCCTCT  55 427
         gap 3053276 .. 3053313 + -12.7  -4.57341   TTTAAGGGGGATCTA   GGGGGATCTTGAGGGGG GAAA CCGCCTTAAAGTCCCCC    TTTTTAAGGGGGATT 100 139
JTM80_RS12500 3056217 .. 3056227 +  -4.6  -2.81768   TAAAACTTAGAACAA                 TGCC TAG GGCG                 ATTTGGGTCATCTGG  45 228
        dmeF 3057397 .. 3057431 +  -2.8  -3.98448   TGTTGGTGTAGGACT     TAAGTTTTTTGCGGAG AGG CTACGCCAGCGACTTA     TTATATTTCTTGATA  56 95
JTM80_RS12520 3061292 .. 3061307 +  -7.6  -3.96842   TATTCTGGCTAAAAT              CGTGTA TTTC TACACG               TTGTTATCTTGAAAT  71 164
         gmd NONE
JTM80_RS12530 3064201 .. 3064220 +  -3.6  -2.87683   GAAACTTCGAGCTTT            TTTCTGTA GAAT TACGGAAG             TATCTACCAAGCTAT  45 247
JTM80_RS12535 3065810 .. 3065829 +  -5.6  -3.75153   ATCAGCCAACGGCTT            GGTGCAGC AGAG GTCGCACC             TTTGGCTTGGCCCAA  59 62
JTM80_RS12555 3069923 .. 3069935 +  -5.5  -3.08798   CGGCAGCACCTATCA                GGGTA CTG TGCCC                TATTAAATACCCGAT  51 7
JTM80_RS12560 3070902 .. 3070913 +  -2.2  -4.15833   TTTGGATTTTAGATT                TTGG GTTG CCGA                 TTTTGGGCTGCTCGT  57 66
JTM80_RS12565 NONE
JTM80_RS12570 3072096 .. 3072131 +  -8.3  -3.56644   TTAATAAATATAAAA    TCCAAAGACCCTGCGC CGCCC GCGCAGGGT-TCAGGA    TCTGTTTTTGAATCT  67 65
JTM80_RS12585 3075639 .. 3075649 +  -6.8  -4.08216   TGATTTGGGTGCAGA                 CAGC AGC GCTG                 TTTTGAGGCGCGTGC  69 57
JTM80_RS12590 3077823 .. 3077839 +  -6.5  -3.55444   GCGATCGCTCGTCAG              TTGGCCG CTG CGGTCAG              TTTCCGGCGTGCGCG  58 467
JTM80_RS12605 3079558 .. 3079592 + -17.3  -4.81863   GACAGGATTGCCGAC    GGGCCAATGATCTGCC AGCG GGC-GATCGTTGGCCC     TTTTATTCTGGCTTT 100 146
JTM80_RS12610 3080727 .. 3080737 +  -2.4  -3.54543   CCAGAAGACCTGTAA                 GCAC CTG GGGC                 TTTAGCAACCTGGAT  47 26
JTM80_RS12615 3082530 .. 3082544 +  -5.6  -4.66609   GGTTTTGGCGCTGTT               GCGGAG TTG CTGCGC               TTTTTCAGTCACCTG  75 232
JTM80_RS12665 NONE
JTM80_RS12670 3094786 .. 3094804 + -13.2  -2.57132   TTTGATCCCCCTAAA             TCCCCCTT GGC AAGGGGGA             CTTCTGGACAGCGGC  78 106
JTM80_RS12715 3103934 .. 3103978 +  -8.4  -3.83324   GAACGGCGGGCGATC GCGGGCTGAGGGGTGGTGTT TTATC AACAACCCCAAACAGCCCGC TTTCGGTATTTGTAC  72 94
JTM80_RS12720 NONE
JTM80_RS12725 NONE
JTM80_RS12730 NONE
JTM80_RS12735 3107077 .. 3107105 + -10.9  -4.68479   ACAGGCTTGCCCTGA        GCGATCGCTCCAG CAG CAAGGGCGATCGC        TTTTGGTTGTTTTCT 100 79
JTM80_RS12760 3113923 .. 3113949 +    -8  -2.92522   CATCGCGAAGCAAAA         CAGCGTGCAG CACTTGT CTACACGCTG         TCTGGTATTCACTAA  60 149
JTM80_RS12770 3115736 .. 3115749 +  -2.3  -4.36914   GCTGACCCGTTGGCT               CAAGC CTTA GCATG                TTTTCTAGACGAAAA  60 16
JTM80_RS12775 3117358 .. 3117374 +  -3.7  -3.57731   GACGACTCAATTCAA              GTTGC AAATAGC GCAAC              TTATCTAGTAATTGA  52 1
JTM80_RS12785 3119399 .. 3119411 +  -4.9  -3.62046   GAACCCAGGAAAATG                TTTTG TCC CAAAA                TTGTTGCCAGGATGC  53 430
JTM80_RS12800 3122058 .. 3122075 +  -3.4  -4.28589   AGGTTGGAGAGAACT             GCGAGGC GGTTG GCCT-GC             TTTTCGATGGTTTTT  64 199
JTM80_RS12810 3124062 .. 3124073 +  -5.8  -2.63596   CTGCTTCTTCTTGCC                TGCG CTTA CGCA                 TCATCTGCACTCCCA  46 190
JTM80_RS12820 3124513 .. 3124542 +  -2.1  -4.59853   GCGATAACCAGATCT       CTGCAAAGCTGATT ATG AGGC-GCTTAGCAG       TTTTTGCCGGATTGG  65 91
        ndhC NONE
JTM80_RS12835 NONE
JTM80_RS12840 3127828 .. 3127854 +  -7.9  -4.51363   TGACTGGTTGTGTCA         CGCCTGGGGGC TTTTT GCTCTTGGGCG         TTTTGCTGTTTGGTA  79 115
JTM80_RS12845 3129077 .. 3129135 +  -5.3  -3.61398   ACGCCTGAGCTGTCA GGTTGAACCGCTGAAGCTG-GGCCTCTAG CGC CTGG-GGCAGCAGCTTTCGCAGTTCGGTC TTGTTGCGAAAGGGC  56 118
JTM80_RS12855 3131068 .. 3131115 + -20.6  -4.73864   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCGC GCA GCAGGCGGCGCAGGGTCTTTGGG TTTTATATTCATTAA 100 66
JTM80_RS12885 3139160 .. 3139177 +  -9.1  -4.06179   CACATAGCGGGCGGT             GATGCGG GGGC CCGCGTC              TTTGTAGGTTTTGCG  75 396
JTM80_RS12895 3142959 .. 3142971 +  -3.3  -3.20382   TGGCGCTCTCCATGC                CCCCT TTA AGGAG                TTGATCCATGTCCCA  46 87
JTM80_RS12900 3145122 .. 3145178 +   -13  -3.11634   GCCGATGACGGGATG CGAGGAGGGGAGGA-GGGTACCAGGAC GCAA GTCTAAATTCCCATCCTCCCCTTCTCG TTCCATCCTGTAAGA  79 42
JTM80_RS12905 3145545 .. 3145569 +  -2.1  -2.58249   TCAGCTTCTATTTCA         GCCC-AAGCA GTCGGA TGCGTAGGGC          GTTCTCCCAACTATG  39 4
JTM80_RS12910 3147431 .. 3147467 +  -9.5    -3.695   CCAGCCCTCCTCGTT    TTTGCCGACTGGC ATCCGCCTTTA GCCAGTCGGCAAC    TTTAGCCTGTTTCGC  77 357
JTM80_RS12920 NONE
        hisA NONE
JTM80_RS12930 3152075 .. 3152087 +  -7.7  -4.87318   TAGGAGCCGTTTCAA                TCCCT GGA AGGGA                TTTTTGGGTTTTGCG  85 187
JTM80_RS12935 3152815 .. 3152861 +  -4.3   -3.5394   TTTTTGACCATCGGA TAGCAGGGACGAGG-AGTTGGC TTGT GCCCCTTGCCTCGTCCTGGCGA TTTACCACGAGGTTT  54 212
JTM80_RS12945 NONE
JTM80_RS12950 3155477 .. 3155500 +  -4.6  -3.34517   CGTCGTAGCGGCCTT          GCAGCA-CC AGGGTAG GGATGCTGC          TGTTTACCGGGGCAT  51 434
JTM80_RS12975 3162072 .. 3162095 +  -5.3  -4.05714   CATTGAGGATAATCA          GGATGAACC AGAACA GGTTCATCA           TTTCTGGTTGACCGT  64 353
JTM80_RS13000 3167986 .. 3168000 +  -2.8  -3.21099   GAGATGTTGTCGCCC               TGGTTC AAG GAGTCA               TTCATAATAAAGCAA  46 52
JTM80_RS13005 3172416 .. 3172434 +  -3.1  -3.73775   CCAGAGAGGGCTGTG            CC-GCGTT CGCC GACGCTGG             TTTCATAGCCGTGGG  52 450
JTM80_RS13025 3178187 .. 3178199 +  -3.3  -2.90496   CGCCAGCAGCAGCAT                CAGCG GCA CGCTA                TAGTTTGCGCCGACG  42 440
JTM80_RS13035 3181534 .. 3181544 +  -4.6  -2.72049   GTTTTAGCGCTTATC                 CGGC ATG GTCG                 TAATTGCAGGCTATG  45 34
JTM80_RS13040 NONE
JTM80_RS13045 3187921 .. 3187936 +  -5.4  -3.25472   TCAACTCCAGCCACT              TGCAGG CGGG CTTGCA               TCTCTTTAGCGCTGT  53 137
JTM80_RS13070 3192936 .. 3192965 +  -2.2  -3.95042   GCGACTTCAAGATTT      AGCTAGGTCTAGAG GCTT CTCT-GACCT-GCA       TTTGCTTCCGGTTTT  53 118
JTM80_RS13075 3193383 .. 3193416 +  -7.5  -2.78679   CCAAGGCTCCAACCC     GCTGATTTTGCCTCCT CTG AGGGTGCAG-ATCAGC     ATTTCCCTCGACGGA  56 92
JTM80_RS13080 NONE
JTM80_RS13085 3195674 .. 3195688 +  -2.8  -4.09685   CCTGGCTGGCGAATT               TCCC CCGTCCA GGGA               TTTTGCCAGGTCGGG  58 249
JTM80_RS13095 NONE
        polA 3200406 .. 3200416 +  -3.2  -2.59323   TGGACGCAAAGTAAA                 CCTG CGG TAGG                 ATTCTGCAAGATTTT  40 27
JTM80_RS13105 3201641 .. 3201654 +  -2.3  -4.14392   CCAGTCGCCCCATCC               CGCCA GATT TGGGG                TTTTGAAGATTGGCA  57 6
        gshA 3203336 .. 3203350 +  -5.7  -3.14647   AAAGCTAGAGCCACA               GAGGT ATTCC ACCTC               TTCCATATAGTGCGT  49 396
        aroF 3205491 .. 3205545 +   -11   -5.1971   TAGTCAGAAAAAGAG CGAAGAACGAAGAGAGAAGAACAAAG AGG TTCTGTTTTTCGTTTTTCGTTTTTCG TTTTTCGTTTTTCGT 100 38
JTM80_RS13130 3208766 .. 3208777 +  -5.8  -2.78596   AGTTCGAGTTTGAGG                CGGT GGAT ACCG                 TCTGATGAGAAGGTC  51 9
JTM80_RS13135 NONE
JTM80_RS13140 3209740 .. 3209777 + -11.4  -4.36914   AGTTGCAAATTAGTA   G-GGAGGTGTTGCGTGG TTAGT CCATGCAGCACCTTCGC   TTTTGTGGAGCGGCA  91 89
JTM80_RS13160 3214656 .. 3214691 +  -7.4  -4.07687   GCTCAAAGCCGAACT    CGGCCGCGCGGCGCGTG AGC CACGCATAG-GCCGCCG    TTTTGCCAAAGGCCT  68 197
        rfbC NONE
        rfbD NONE
JTM80_RS13185 3220433 .. 3220449 +  -2.2  -3.01712   ATCGACCTGGCGTAG              GGAATC GCGTA GTTTCC              TCTTGAGGGAAGGGA  41 26
        rfbB 3221752 .. 3221768 +  -5.8  -4.19238   GAGTAAGTAACTCCT              GCACTG CCACA CGGTGC              TTTTCACATTCAAGG  68 131
        psaC 3224837 .. 3224858 + -15.9  -5.45652   CATAGCAACCACCAG           CAGGAGGGC GATC GCCCTCCTG            TTTTTTATTGCCGAT 100 203
        glmS 3227435 .. 3227446 +  -3.6   -5.1356   GCCAAAATCCGCTTT                TGCC GATT GGCG                 TTTTTGTTGATGGAA  81 523
JTM80_RS13230 3230480 .. 3230498 + -13.2  -2.73635   CAAGATCTCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  79 482
JTM80_RS13240 NONE
JTM80_RS13245 3233527 .. 3233549 +  -6.4  -5.10497   TCAGCTCGGCGGAAA           TTTGCGTAAA TTT TTTGCGTAAA           TTTTTTGCGTAAATT  86 45
JTM80_RS13265 3237353 .. 3237364 +  -7.2  -3.63627   CGCAGACACCACGTT                GCGC TGGA GCGC                 TTTCCAGTCTGGCGA  63 444
JTM80_RS13360 3259340 .. 3259367 +   -12  -3.15544   GCGGGCGTTCAGGAG        TCGCTGCCCCTTG TCG CGGGGGGC-GCGA        TTGGTAAGGCTGAGG  73 474
        cysE NONE
JTM80_RS13455 NONE
JTM80_RS13460 NONE
        nifW 3280436 .. 3280494 +  -3.5  -3.11836   AGTCGAATAAGACAT TTTGAATTTGCAGGTTTGAA-CTGTGAAT TTC AGTCAAAGCTTCAAGC-TGCAAGCTCAAA ATTTTCCATCCCTAT  46 31
JTM80_RS13470 3281366 .. 3281378 +  -5.5  -3.53012   ACCCTGAGGTAGCGG                TGGGC AAT GCCTA                TTTCACACACAGCAC  56 64
JTM80_RS13475 NONE
JTM80_RS13480 3282286 .. 3282298 +  -4.1  -2.79803   ATGGATGCAGCCTAT                GGTTG ACC CAATC                CTTTCGCTGGAGTTG  44 63
JTM80_RS13485 3282657 .. 3282712 +   -19  -5.23316   GACATTAATAAATAT AAAACCCAGAGACCCTGCGCCGCCCGT TGC GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 68
JTM80_RS13490 NONE
JTM80_RS13495 NONE
JTM80_RS13500 3284779 .. 3284789 +  -3.2  -3.56092   AGCTGAAAATCCTTA                 TGGC CGT GCTA                 TTTGGCAAATGCTCA  49 333
JTM80_RS13520 3286692 .. 3286724 + -11.3  -4.70659   TTCCGACAACTTGCT      CGAGACGAGTCGTTT GAC AGACAACTCGCCTCG      TTTTTGCATCTAGGG 100 66
JTM80_RS13530 NONE
JTM80_RS13535 NONE
JTM80_RS13540 3290398 .. 3290422 + -15.1  -5.06451   TTTGAGTTTGAGGTT          TTAGGGCGCTC ATC GAGCGTCCTAA          TTTTTTGGAGTGGTG 100 36
JTM80_RS13545 3291402 .. 3291421 +  -9.4  -3.43117   CGGTCGCCGTTTTTG            TTCTCATC AAGC GATGAGAA             TTGTCCCTTGCCTGT  69 9
JTM80_RS13550 NONE
        cydB 3294278 .. 3294288 +  -8.2  -3.14548   CCGCATTCCTGATTA                 GCGG GCA CCGC                 TTCCATAATCTTCTT  57 300
JTM80_RS13565 NONE
JTM80_RS13570 3296737 .. 3296753 +  -2.3  -2.96216   CCAATCTTGATCATG              CTGAT CCAACTC ATCAG              TGTGTGGTGCTGGAA  41 130
JTM80_RS13575 3297130 .. 3297149 +  -3.6  -3.27808   GGCTTAATTCCTGGA            GGAT-GAGC CAT GCTTGATCC            GTTTTATCCATTCGA  48 34
JTM80_RS13580 3298402 .. 3298413 +  -3.6   -3.6869   CCTGTGCGCCGGTTG                GGGC ATCA GCTC                 TTTGCAGTTCCTCTA  54 293
JTM80_RS13615 3303553 .. 3303582 + -19.5  -3.06915   CCTGAATAAAGCGAA       CTCTTTCTTGGGC GATC GCCCAAGAAAGAG        TTCGCTCAGCTCAGT 100 472
JTM80_RS13625 3304411 .. 3304426 +  -4.7  -2.60075   AGCACAACTCAAACC              CGTGA CTTAAT TCACG               CTTGATTCAACGAGC  44 56
JTM80_RS13630 3305515 .. 3305534 +  -2.9  -4.57569   AACTCGTTAGGTAAT            TCGATAG GGGGAG CTATTGA             TTTTTAGAGCGATCG  64 91
JTM80_RS13635 3306253 .. 3306271 + -13.2  -3.54424   GAACCACTCCGGAAG             TCCCCCTT GTT AAGGGGGA             TTTAGGGGGATCGAC  86 123
JTM80_RS13640 3307396 .. 3307412 +  -2.9  -3.63515   GCTCCAAATTGCGGT              GCGTAAC ATA GTTCTGC              TTCTTCCAAGTCGAA  49 359
JTM80_RS13650 3311947 .. 3312003 + -18.8  -5.23316   GGGCATTAATAAACA TAAAACCCAAAGACCCTGCGCCGCCCGC TGC GCGGGCGGCGCAGGGT-TC-GGGATCTG TTTTTTAATCTGGTC 100 132
JTM80_RS13665 3315333 .. 3315344 +  -2.2  -4.14392   CCCGTTCAAAGGCAG                CC-GC CAT GCTGG                TTTTCCCAGTTCCAG  59 141
         ald 3329574 .. 3329590 +  -5.1  -3.34267   GCGGCAGGTTTTCCC              CGACCTA GCG TAGCTCG              TGTTGATTTGCGATT  54 13
JTM80_RS13760 NONE
JTM80_RS13765 3337637 .. 3337648 +  -7.2  -3.14881   GCCAGATCAATCTGC                CCGC CGTT GCGG                 TTGATGCCGCCGTTG  54 442
JTM80_RS13775 3339948 .. 3339966 + -13.2  -3.55815   GAGCTGGATCGGAAG             TCCCCCTT ATC AAGGGGGA             TTTAGGGGGATCTTT  86 462
JTM80_RS13780 3342977 .. 3342999 + -11.2  -2.62983   CTGTTATTTATCAGG           GCGCGGGGGC AAA GCTCTTGCGC           TCCTGTGCCGCTCAA  70 273
JTM80_RS13785 NONE
JTM80_RS13790 3345063 .. 3345087 +   -10  -2.78996   ACACTTCTGCCTAAA          TCCCTCTCCC AAAAC GGCAGAGGGA          CTTTCAATCCGACTC  65 278
JTM80_RS13810 3350120 .. 3350133 +  -3.7  -4.56775   AAAGGGGGACTTTAA               GGCGG TTTC CCCCC                TTTTTAAGGGGGGCT  66 135
JTM80_RS13865 NONE
         mdh 3365260 .. 3365278 + -13.2  -3.54424   AAGTCGCTCCGGAAG             TCCCCCTT TTC AAGGGGGA             TTTAGGGGGATCGAC  86 126
JTM80_RS13880 3367323 .. 3367343 +  -4.7  -2.86449   CAGCCTGCTCCAGTT           G-CCCGCA AGAAAG TGCGGGGC            TAGTTCTGCTGGAGT  45 2
JTM80_RS13885 NONE
JTM80_RS13890 NONE
JTM80_RS13895 3371504 .. 3371522 +  -5.9  -3.17941   AACCTGCGAAATCTA             GGCTGGC AACAA GCCATCC             TTAATCCACTCTACT  53 116
JTM80_RS13900 NONE
JTM80_RS13905 3374457 .. 3374467 +  -6.8  -3.09175   CCGTCGGGTCGGGCT                 TGCC GGG GGCA                 TCTTCCATCGCAATT  54 327
JTM80_RS13915 3375532 .. 3375569 +  -8.5   -4.8543   TGATGGTGTTCATTT   GTTTGACCTCTGACTTC TTCG GGAGTTAGAGGTCTAAG    TTTTTATCAAAATTC  87 158
JTM80_RS13925 NONE
JTM80_RS13930 3379215 .. 3379229 +  -2.1  -5.27023   TTGGGTGAATCTTCT              G-TCCG CCGT CGGAGC               TTTTGTTTTTGCGCT  78 206
JTM80_RS13935 3381263 .. 3381274 +    -3  -2.71791   AAAAAATATCCAAAA                GTTT CTCA AAAC                 ATTTGACAAAAGGCT  41 64
JTM80_RS13940 3381392 .. 3381415 +  -5.9  -4.28651   TCACGGCGGAAGTTG          CGGGTTCGA GCCCCG TCGGTCCCG           TTTTAGAGTTTTACT  71 1
JTM80_RS13945 3381844 .. 3381856 +  -2.6    -3.224   TACCGCAACATTTTG                CGGG AAGGC CTCG                TGTTGTAAACCATTC  44 5
JTM80_RS13950 NONE
JTM80_RS13955 3384056 .. 3384066 +  -2.4  -3.53012   CCGACCCGTTGCAGC                 CTGC GGT GCCG                 TTTCCGACGGAGGAG  47 219
JTM80_RS13960 3384677 .. 3384690 +  -9.5  -2.75382   CATAATGGGAAAAGT               CGGGC GATC GCCCG                TCGTTGGGTAAAGTG  65 66
        dusB 3386216 .. 3386227 +  -2.2  -3.50335   CAGGGTTCACAGCGT                CGGT GTTC ATCG                 TTGGTATTTGTAACG  47 451
JTM80_RS14000 NONE
JTM80_RS14005 NONE
JTM80_RS14010 3392218 .. 3392232 +  -4.2  -3.42621   CGCCTGACGATTGCG               CCCGTT AGG GATGGG               TTCTGGCTTGGCGTT  49 277
JTM80_RS14020 3394628 .. 3394645 +  -8.5  -3.05384   AAGGTTTCCTGGCTG             CACGATT GGAC AATCGTG              TTCACTAGCAGACCA  62 410
JTM80_RS14025 3395858 .. 3395895 + -16.3  -3.27215   AGCACTCGGCAAAAC   GCGGGCGCGGTTTAGTC TCAG GGCTAGGCTGTGCCCGC    TTGATGTCAAGCTTT 100 43
JTM80_RS14030 NONE
        arsJ 3398401 .. 3398437 + -12.3   -2.7386   TTGCCTTGAGTCGAT    CTCCCTAAATCCCCCTT ATT AAGGGGGATCTCCGGAG    TGATTCGGCTCGGTT  74 88
        arsB 3399931 .. 3399942 +  -4.4  -3.30124   TTGTGCATCAGTTTG                CCTA GCAC TAGG                 TTGTGCAGGGTCAGG  49 158
JTM80_RS14050 3402732 .. 3402750 + -13.2  -3.55071   TAAGCCACAAAAAAG             TCCCCCTT GCC AAGGGGGA             TTTGGGGGGATCTAA  86 38
JTM80_RS14065 3412729 .. 3412747 +  -6.6  -4.88129   CCTGCACCCTGGCGG             GCTGGGGG CGA TCGCCAGC             TTTTTCGTCCTTTTT  82 174
JTM80_RS14070 3414094 .. 3414110 +  -6.5  -4.21194   TCATGCTCATAACGT              GCTTGTG AAT CCCAAGC              TTTTGAATACTACGC  71 277
JTM80_RS14075 3415198 .. 3415221 +  -8.8  -2.72144   GATGCTGACTCTGTT          TCACCTGGGC GATC GCCCGGATGA           CTTTGCGCCAACTGG  62 147
JTM80_RS14080 3416214 .. 3416224 +  -3.2  -3.84246   CTGCTGAAACCCTTA                 CAGC ATG GTTG                 TTCTTGATTGGTCAT  54 104
JTM80_RS14085 3417751 .. 3417774 +   -11  -4.16842   ACCTTCCTGATGCGC          CGGGTGCC CCTCAAAA GGCACCCG           TTTCTTGAAACTAAA  91 70
JTM80_RS14105 3419974 .. 3419988 +  -2.8  -3.63805   CCATTGCAGAAGCAT               TTCATC ACA GATGCA               TTTGGCCTATGCGGT  49 67
        sufB NONE
JTM80_RS14115 NONE
        sufC NONE
        sufD NONE
JTM80_RS14130 NONE
JTM80_RS14135 3426297 .. 3426319 +  -9.2   -4.3534   CCCGCTGACTTCTCG           CTGACATCTC GCT GACATGTCAG           TTTTCATGATTAAGG  83 42
        cofG 3429004 .. 3429018 +  -4.2  -3.64703   AGTGCTGCTGAACGT               CGGG ATTTGCG CCCG               TTTCGGTGAAAACGA  54 351
JTM80_RS14160 NONE
JTM80_RS14165 NONE
JTM80_RS14175 3434132 .. 3434146 +  -2.8  -3.52918   CTCTGCGCCTGACGA               GTGCTT TAC AAGTGC               TTCATTTAGGACTTA  49 194
JTM80_RS14185 3436341 .. 3436361 +  -8.3  -4.02075   CCTGGACCTCCGGCA            CTTAGGCCT TAA AGACCTAAG            TTTAGTTCCTGTTTC  74 21
JTM80_RS14190 3437174 .. 3437229 + -22.6  -5.23316   GGACATTAATAAATA CAAAACCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 136
JTM80_RS14205 3440408 .. 3440422 +  -5.6  -3.78934   CCCGATCAGGTCGCG               GACGTG GAA CTCGTC               TTCTTCTAGGGGCAG  58 358
JTM80_RS14225 NONE
JTM80_RS14240 3448199 .. 3448214 +  -4.6   -3.5511   GTAGAAAAAGGTGTT              CCAGCG AAAC CACTGG               TGTTTGTCCATCAGC  53 390
JTM80_RS14250 NONE
JTM80_RS14255 3452954 .. 3452965 +  -5.8  -3.60098   ATGGCAGTCGTGTAA                TCGC CGCT GCGA                 TTTGGCGTGGGAACT  55 413
JTM80_RS14270 NONE
JTM80_RS14275 3458271 .. 3458286 +  -3.2  -3.37612   TAGTTGGCTCAAAAT              GCCTCA AATC TAAGGC               TTGCTTAACATTCCG  47 167
        hemC 3459584 .. 3459595 +  -4.4  -3.14344   CGTCAACTGAGGGGC                GATC GCCC GATC                 TTCCTAAAACGAGTC  48 322
JTM80_RS14285 3460298 .. 3460308 +  -2.4  -3.14998   CGCCCGGAAATTACT                 ACGG TCG CCGC                 GTTTATTAGTCCCTC  42 6
        glgA 3462460 .. 3462478 +  -4.4  -3.66356   TCATCGCCAATCAGC             CAGTCGGC GGT GCTGGCGG             TTTGCCCTTCGGCAT  56 514
JTM80_RS14305 3465318 .. 3465332 +  -4.2  -3.16191   GCCCGCTGCAACAGC               TTGCGA TAC TCGCGG               TTGCTGACGATGTAG  45 241
JTM80_RS14315 3466381 .. 3466395 +  -5.6  -3.05384   CAGTCTGGGGATTGA               TCGCTG CTG CGGCGG               TTGAGTAGGGCGCAG  51 7
JTM80_RS14320 NONE
JTM80_RS14325 3469274 .. 3469305 +  -9.4  -4.33274   CACGCGAAACTGTTC      CGGTGTCAGAATGG CTCG CCATTCTGCCTCTG       TTTTGGTGATCTCGA  83 460
        trpS 3471321 .. 3471331 +  -5.4  -2.70932   AAGAGGTCAGGGAGA                 TTGC TCC GCAA                 TGCTTGCGCGAACAG  47 40
JTM80_RS14345 3472518 .. 3472529 +  -7.2  -3.30701   GTAGCGAGATGACCT                GGGC GATC GCCC                 TTAGGTTTGCTGGAG  56 167
         ppc 3477173 .. 3477210 +   -12  -4.60255   TTGACTCAGGCATCT   CTGGCCCCGTCAGG ATTAAATCGA CCTGGCGGGGTCGG    TTTTTCAAAAGTTCT 100 242
JTM80_RS14365 3479565 .. 3479578 +  -2.3  -3.66654   AAACAATACTTCATC               GCAAG GTCG CTGGC                TTTGGCGTTGCGCTC  51 131
        tatA 3486801 .. 3486825 + -15.1  -3.04398   AACCCTCACCCTAAA          TCCTTCTCCCA CTC TGGGAGAGGGA          CTTTTGAAAAAAAGC  89 149
JTM80_RS14410 3489798 .. 3489809 +  -4.4  -3.84246   CATCGAGTAAAATTA                GTAC GAAA GTAC                 TTTACTCATTCCCCC  59 242
JTM80_RS14415 3490499 .. 3490517 + -13.2  -3.54424   CTAGAAAGTCTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCGAC  86 206
JTM80_RS14420 3491886 .. 3491912 +   -21  -3.31461   TTGAATTTTGGACAA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 85
JTM80_RS14435 3496589 .. 3496619 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS14470 3505617 .. 3505632 +    -4  -4.56597   TGCCCGGTGGCGTGA              GGCG-AT AGA ATGCGCC              TTTTTCGACCCGCAG  70 399
JTM80_RS14480 3509634 .. 3509648 +  -9.2  -3.22653   GAAAGATGAGCGATT               GGGGGC TTT GTCCCC               TCTTCTGGCGCTGGT  67 66
JTM80_RS14485 3513279 .. 3513293 +  -2.8  -3.47218   TTGCCGCCTGTGATA               TCGC CGTAGGT GCGA               TTGGCTTTTTGGTGG  47 219
JTM80_RS14495 3514603 .. 3514623 +  -3.2  -3.92071   GCAGCTGCGCTGCCC           CG-CGCTCG TCCA CGGGTGTCG            TTGTCTTCTTTGATG  55 340
        trmD 3520166 .. 3520182 +  -3.6  -3.53012   GTGAGCTATTGTAAA              GCGCTT CTGCC ACGCGC              TTTAGCCGCCGCAAC  51 481
JTM80_RS14545 3529206 .. 3529218 +  -3.4  -4.11394   GATCGCCGAGTCTCC                TGCT CGATC AGCA                TTTTGGCAATGCCCT  60 155
JTM80_RS14560 3531028 .. 3531040 +  -4.8  -4.59773   CTCGATCTCAAACTC                GCTG TCCTT CAGC                TTTTTGGGCGTGACG  72 333
JTM80_RS14570 3533422 .. 3533433 +  -5.8  -3.78351   ACTGCAAAGCGTCAG                GGCA TTTC TGCC                 TTTGATGCCATTTCT  62 69
         pyk 3535117 .. 3535132 +  -2.5  -4.55128   ATCGGCACCTTTGCT              GCTGG GTAGCA CTAGC               TTTTGGTTTCAAGCT  62 17
JTM80_RS14580 NONE
JTM80_RS14585 NONE
JTM80_RS14590 3539098 .. 3539116 +    -3  -3.54424   CAGATTTCCCAGGAT             CAGGGGCG CAT TGCCGTTG             TTTCGCAGGGTCACA  49 499
JTM80_RS14600 3543245 .. 3543271 +  -2.2  -2.87132   GCGCGGTGAATCGGC         ATCTGCAACTGT TCT ACTTTTGCAGAA         TGTGTCGGGGCGCAC  41 107
JTM80_RS14605 3544032 .. 3544046 +  -5.7  -4.07885   GGCGTTTAGAAGAAG               CGCTT AGGAG AAGCG               TTTTAACGCCCGATC  66 59
JTM80_RS14615 3547301 .. 3547314 +  -2.3  -2.77235   CATTACGGTTCACAT               TCCGC TAGA GAGGA                TCGTTCCATGATTCG  39 1
JTM80_RS14620 3548001 .. 3548012 +  -5.8  -2.58069   AAAATCTGCCCCAAC                TGCC AAAC GGCA                 ATGTTATGATGTAGG  50 54
JTM80_RS14625 3548124 .. 3548137 +  -3.9   -3.6501   GGTCTGAAGTCACTC               TAATC ACTC GATTA                TTTCAGGTGCTTATT  52 41
JTM80_RS14665 3557503 .. 3557515 +  -9.1  -3.24825   GAATCCTCGTTGCTC                TCGGC AAA GCCGA                TCTTAATTCAGCTCC  67 506
JTM80_RS14670 3558240 .. 3558251 +  -5.8  -3.56643   GGTTCAGCGATTTTG                CAGG TGGC CCTG                 TTTGAGGAGTCTGCG  59 139
        dnaA NONE
JTM80_RS14700 3564492 .. 3564518 +  -8.7  -3.15663   GCCGGCTGGCAAACT        CCGTCCCCGCTG AGGT CAGCAGG-ACGG         TTGCTGAGAGTGGGT  65 13
        miaB NONE
        rdgB 3572104 .. 3572118 +  -2.8  -3.27774   ACAGCAGAACAGGCA               GCGA GATTAAA TCGC               TTCCTGGTTAGCCTC  46 59
JTM80_RS14745 3576329 .. 3576366 +  -2.5  -4.07885   GGATCGAAGCCCATA   GCTCCTGAGTTGGAGCC GGAG GGCTTGGTCAGAGGAGC    TTTTGGGCCAGCGTC  55 239
JTM80_RS14775 3587035 .. 3587059 +  -8.5  -5.43866   GAATACGACCCAGAG          GGGCAGCGC GTGTTTA GCTCTGCCC          TTTTTTTAGAGCTTC 100 75
JTM80_RS14780 3588578 .. 3588596 +  -7.4  -3.28712   GTTGACCTTTTCACC             CAGCATCG ACT TGGTGCTG             TTCTAGGCGACCCGG  61 1
JTM80_RS14815 3599430 .. 3599445 +    -4  -2.93975   CCTGGATCTCAATTC              CTC-CCT GAA AGGTGAG              ATATTTTTGCACGCT  45 243
JTM80_RS14820 NONE
JTM80_RS14825 3601347 .. 3601369 +  -4.2  -2.57344   CAAGAGGCTTTCACT           CAAATCTG CATCACT CAGGTTTG           CTTCTCGCAGCAGTG  42 322
JTM80_RS14845 3606459 .. 3606476 +  -6.9  -3.30124   AGGCAATGAGTGGAT             CGCCGCA AGAT TTCGGCG              TTCTCAGCCGTGCGC  56 319
        cas1 NONE
        cas2 3622482 .. 3622519 + -12.1  -4.85267   CTCCGACACAATCTA   GGGCGATCGCCAGATGAG TCA TTCATCAG-CGATCGCTC   TTTTTGCTGCTTTCT 100 75
JTM80_RS14910 3637628 .. 3637646 +    -3  -3.23251   GTGCGGAGCTTACTT             CGAGGATG TAG CTTCCTGG             TCTATTAATTGTTAA  45 401
        cas6 3639368 .. 3639378 +  -2.4  -3.08314   CGCTTCATCTTCGGG                 GCGC AAC GCGG                 GTTTTGGGGGTTGGG  41 123
JTM80_RS14935 NONE
JTM80_RS14940 3645206 .. 3645222 +  -5.7  -3.61371   TGACTGAGCAGCACG              CCCGTTG AGG CTGCGGG              TTTACCGTAACGTTT  59 101
        katG 3648034 .. 3648086 + -14.3  -2.93858   CGGTCTGAGAATAAA GTGAAACGGCTTCAGGTGGGGAT ATCTAGC ATTCCTGCCTGAAGCCGTTAAAC TCTGTAAGTATCCTC  83 165
JTM80_RS15000 NONE
JTM80_RS15005 NONE
JTM80_RS15010 3666608 .. 3666637 +    -5  -3.31162   CCAGGTTAGCTCAGT       GCTGGACGGGATC ATCCA GATCTCG-CTGGC       TATCTTTGCTGGTGA  53 421
JTM80_RS15020 3669403 .. 3669426 + -13.2  -4.06384   AACAAGCCGTCTCCA          TGACCAGTCC TTTG GGGCTGGTCA           TTTGTCATGTTGGGA  93 89
JTM80_RS15050 3677161 .. 3677188 +   -12  -4.54727   TAGTTTAGTTAAGGA        TCGCTACGTGGC TATG GCTGCGTGGCGA         TTTTGCTTTCAAGGG 100 71
        trpB NONE
JTM80_RS15060 NONE
JTM80_RS15065 3680639 .. 3680653 +  -5.7  -2.71712   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 290
JTM80_RS15070 NONE
JTM80_RS15075 3681965 .. 3681986 +  -3.7   -2.7976   GCACAATCTCTTGAG           TTTGTCCTG GGTG CAGCACAGA            GTTTAGAATATTGAC  44 125
JTM80_RS15085 3683542 .. 3683564 +  -2.7  -2.75064   CTGCTTTTAGAGAAT          GCTCTAACGT GACT GCG-TAGGGC           TGCTTGACTGACAAA  41 6
JTM80_RS15090 NONE
JTM80_RS15095 NONE
JTM80_RS15110 3690316 .. 3690328 +  -3.3   -2.7395   CGTCAGAAAAGACTG                CCGCA GCC TGGGG                ATTTGAGCGCTATAT  41 111
JTM80_RS15115 NONE
JTM80_RS15140 3696972 .. 3697000 +  -3.8  -3.66178   TCATTCTGCTGCCCT        CCCTTTCAGTGG ATACC CCGCTCAAAGAG        TTTGAAATTCAGCGC  54 115
JTM80_RS15145 3699103 .. 3699133 +  -4.1  -2.75844   GTTTACGCTAACAGC       TTCTCGCTATA GAATAAAAG TATCGCGAGAA       ATTTGGCGTAGCCAA  44 55
JTM80_RS15150 NONE
JTM80_RS15155 NONE
JTM80_RS15160 3701824 .. 3701836 +  -3.3  -3.92373   ATGCTCAAGCGCTTG                GCAGC TTA GCTAC                TTTATAAATCAGCTC  54 17
JTM80_RS15165 3703862 .. 3703881 +    -7  -2.61912   ACCCAACTCCCCAAG            CGGGGCCG CCGC CGTCCCTG             ATTCTACGTCCCTCA  52 5
JTM80_RS15175 3706752 .. 3706768 +  -3.7  -4.11394   GGATTGGTCGGGTCT              TTCTGGA ATT TCTGGAA              TTTTAAGGATGCGAT  59 143
JTM80_RS15180 3707805 .. 3707842 + -12.1  -4.09685   AGAAAAGGTGCCGAA   TGGCGATCGCCCTGAGAG TTG CTCTTGGGGCGAT-GTCG   TTTTGGGCAATGCCA  90 222
JTM80_RS15185 NONE
JTM80_RS15190 NONE
JTM80_RS15195 3711808 .. 3711855 + -19.2  -4.89838   GATAGAAAGAACAGA TCCTGA-ACCCTGTGCCGCCCGC TGC GCAGGCGGCACAGGGTCTTTGGG TTTTATATTTATTAA 100 63
JTM80_RS15210 NONE
JTM80_RS15215 NONE
        hpsP 3715869 .. 3715890 +  -2.1  -3.73068   ATCCAGAAAACTTAT           TGCAAGTGC GTAA GCCCTGGCG            TTATTGACTTAGGGA  50 114
        lexA 3718857 .. 3718887 +  -8.2  -2.83403   TAATCGCAGTTGGAC       AATTTCTCGCGGGC TGC GCTCGCGAGAGAGG       CTTTGCTCGAGAGAA  59 134
JTM80_RS15240 3719709 .. 3719741 +  -6.3  -3.13177   GCTTTGCACTATCTG      GACTAATGGTCTGGA CTA TCTGGACTAATGGTC      TTGGCTATAGAGTCT  53 151
JTM80_RS15245 NONE
JTM80_RS15250 3723856 .. 3723867 +  -2.2   -4.2349   TTTTGCGCGGGCTGC                TCTG CTTT CAGG                 TTTTCCATCTGAGCC  59 218
JTM80_RS15260 3727430 .. 3727469 +  -6.6  -5.30686   AAAATCGACTCTCTT TGGGCGGCTTGATGCGAG GCTTTG CT-GCATC-AGCCGTCTA  TTTTTTGTGCCTGTT 100 138
JTM80_RS15265 3728936 .. 3728966 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAAA       TTCTTTATGGCATCC  59 53
JTM80_RS15305 3741169 .. 3741193 +    -7  -4.05026   TGAGCCACGACAAAA          GGCGCACCCC CAGCA GGAATGCGCC          TTCTTTGGGTTTGAA  69 89
JTM80_RS15320 NONE
JTM80_RS15325 NONE
JTM80_RS15330 NONE
JTM80_RS15335 3753465 .. 3753486 +  -2.9  -3.60627   CTGCACTGATTTGAA           CCTGGTTTG AGTT TGAACCTGG            TTTGAGATGACATCC  49 91
JTM80_RS15340 NONE
JTM80_RS15345 3754028 .. 3754038 +  -2.4  -3.53012   ACTTATCGCAACTGA                 CTCC CGG GGCG                 TTTGCAGCAAGCCAC  47 43
JTM80_RS15375 3760905 .. 3760929 +  -6.4  -2.75307   CACGGTCTCTAGCGC         TACCC-CCAGG CTGA CCTGGCGGGGA          TCGTTGGGCTGTCTT  49 498
        murA 3763368 .. 3763404 +  -9.6  -5.04601   CAAGAAGGCTAGCGC   GA-GGGGTTGAGGATTA GACT TGATCCTCAGCCTCTTC    TTTTTACTTTCTGCG 100 55
JTM80_RS15405 NONE
        petG 3768336 .. 3768355 +  -7.8  -4.92314   AAAATTGTCGGAATG            GAGGCCCT TTTG GGGGTCTC             TTTTTATAACTTGCT  87 352
JTM80_RS15430 3771310 .. 3771331 +  -4.3  -3.83375   GTTTGATCCAGAGAC           GGGCGATCG CCTC CGGTAGTCC            TTCTATTCGTTTTCC  59 7
        glyQ 3784021 .. 3784033 +  -4.8  -3.51232   CGCACGTTTGGCAGC                GCAG CCCCT CTGC                TTCCTTTGCAAAGCC  53 98
JTM80_RS15490 3787284 .. 3787298 +  -5.7  -2.71712   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 452
JTM80_RS15505 3792279 .. 3792296 +  -4.8  -2.52834   CTCCTAAATTTAGGA             GCAGGG AGGAGG CTCTGC              ATTCCTGCTCACCTG  44 42
JTM80_RS15510 3793432 .. 3793462 + -11.9  -2.95073   GCGGGAACCAGAATG      GCTGCTTTG-GGGC GATC GCCCTCAAGGCGGC       GTTTCATCTTCCGGC  76 182
JTM80_RS15520 NONE
JTM80_RS15525 NONE
JTM80_RS15530 NONE
JTM80_RS15535 NONE
JTM80_RS15540 3798858 .. 3798871 +  -2.3  -3.35046   CCGCAAAACGTCAGC               CAGGC CCAG GCGTG                TGTTTGGAGCGATCG  46 252
JTM80_RS15550 3799449 .. 3799467 +  -4.6  -4.35742   GTCACTGGTTCGAGT             CCAGTA CCGCCCA TACTGG             TTTTAGTGCTTGAAT  66 11
        miaA 3803641 .. 3803653 +  -6.9  -2.82933   GCAATATTCAGCAAC                GCTGC AAA GCGGC                TGTGCTAGGTTGGGA  53 197
JTM80_RS15565 NONE
JTM80_RS15570 NONE
JTM80_RS15575 3807230 .. 3807240 +  -6.8  -3.61328   AGGAAAATAGTCACG                 CCCA GAC TGGG                 TTTCCGGGTCTTCCT  62 31
JTM80_RS15585 3809196 .. 3809208 +  -3.3  -2.88861   AGCCCCCCTCCCCCT                GCGAC CCC GTCCC                TCTCTCCCCCTCCTC  42 168
JTM80_RS15590 3812900 .. 3812936 +  -3.6  -2.98823   CCAGGCAGCAGATGT   TTGCCATGCGA-AGGGC GATC GCCCTGTAGCTTGGCCG    TATCTGTGGGGAAAG  45 176
JTM80_RS15595 NONE
        lepB 3815082 .. 3815093 +  -7.2  -3.63744   AGGGAAGGGTTTCGA                GGGC GATC GCCC                 TATTTTCAAAACCCC  64 481
JTM80_RS15615 3817367 .. 3817378 +  -5.8  -2.78816   TGCCCACGCCCGTAA                TGCG CTGC CGCA                 TCTGCTCAGCCGTAA  47 471
JTM80_RS15625 3819196 .. 3819245 +  -4.9  -5.02074   TGTGGTAGAACCAGT TCGCGTGATGAAGGATTGGGGCT TGAG GGCTTTGACGCTCCATCACGCGG TTTTTTGACAAATGA  76 33
JTM80_RS15635 3821619 .. 3821645 +   -21  -3.31461   TTGGGTTTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 504
JTM80_RS15640 3823725 .. 3823766 +  -2.1  -3.65294   TAGATCAGGCTGAAC AGGGTGCAGTTGGGAAAGG CTTA TTTGTCCCGTCTGTGCCCA  TTGCTTTATGTCCGC  50 57
JTM80_RS15645 3824993 .. 3825008 +  -2.6  -3.21695   TCAGCCCCCTCCCAG              TCTTAA ACTT TTGAGA               TTGACTTGATACTGA  44 20
JTM80_RS15650 3825546 .. 3825556 +    -4   -3.4616   CAGAGTTCTCGCTTG                 CTTT GCA AAAG                 TTGTCCAGTTTTTTG  50 212
JTM80_RS15660 3827818 .. 3827828 +  -2.4  -3.60627   ATAGAGGCTGTAGAT                 AGGC AGC GCCA                 TTTGCCCTGCAATCG  47 438
JTM80_RS15720 3836837 .. 3836851 +  -6.4  -3.35798   GCCCATTCACAATTT               CCGACA GAA TGTTGG               TTGTCGCTACGGGGT  56 182
JTM80_RS15740 3840930 .. 3840976 +  -8.7  -4.21194   TCTGGGCATCTTCGC CTGTGGCAGCGGCCAGCGTT TCGAGTCC GACGG-GGCCGCCGCCATAG TTTTCGATGATCACC  78 219
JTM80_RS15750 3842665 .. 3842683 +  -2.3  -2.71791   AACCGACTGCGTGAC             TGTCGCC ACTTG GGCTGCA             CTTTCACAAAAAGCT  39 158
        nuoH NONE
        ndhI NONE
JTM80_RS15780 3848540 .. 3848561 +  -3.7  -3.17194   AACGCCCCCGTGAAC           TCACTGGAA CCAG TTCTAGAGA            TTAGGTTCACCCCGT  46 0
        nuoK NONE
JTM80_RS15790 3849888 .. 3849901 +  -3.8  -3.06261   TAGAGGTTCTGCTGG               GTCG AGTACC CGAC                TATTACAGGTTCAGG  46 38
JTM80_RS15795 3850738 .. 3850784 +  -4.3   -3.5394   TTTTTGACCATCGGA TAGCAGGGACGAGG-AGTTGGC TTGT GCCCCTTGCCTCGTCCTGGCGA TTTACCACGAGGTTT  54 376
JTM80_RS15815 3854710 .. 3854738 +  -8.8  -2.75064   CTGAAAATACCCGGA        TGCCCAGTCCTT TTAGT GAGGGCTGGGCC        TGGTTGACTGACAAA  62 62
JTM80_RS15820 3856372 .. 3856390 + -13.2  -3.55548   GAAACCGCCTTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCTTG  86 356
JTM80_RS15825 NONE
JTM80_RS15830 NONE
JTM80_RS15835 NONE
JTM80_RS15840 3859076 .. 3859113 + -17.1  -2.52896   AAACTAAAGCAGATG   CTTGCACCAGCCTCTAT CGTC GTAGGGGCAGGTGCAAG    TCCCTTCGGGAATGC  95 145
JTM80_RS15855 NONE
JTM80_RS15860 3860305 .. 3860321 +  -4.3   -3.2396   TTTTCCTGGAATCTA              GCCTGGG CAT TCTGGGC              TTCCTGCTGCTGATT  50 145
JTM80_RS15880 3867893 .. 3867903 +  -6.8  -2.57463   CAAGAAGTCCTACTA                 GGGT TGA ACCC                 GTTCTGCAACCAATT  52 25
JTM80_RS15900 3873738 .. 3873761 +   -11  -5.77853   TTCAACTAGTGGGAC          GCGGGGCTAT GCAT GTAGCTCCGC           TTTTTTTTGGAGCTT 100 322
JTM80_RS15920 3878807 .. 3878823 +  -5.1  -3.86346   CGGGGACATATTCCA              GCAGG CGCACGT CCTGC              TTTGTGCCGGGGTCA  59 479
JTM80_RS15935 NONE
JTM80_RS15940 3883983 .. 3884011 +  -3.2  -3.38218   ATCTTCCAGTAATTC       GTAGAG-TGCG CTGCTTGA CGCATCTCTGC        TTATCGCGTGTTTAA  47 22
JTM80_RS15945 3884380 .. 3884412 +  -2.6  -3.57263   GCTATTTGGGGCAGA     CCC-TCGATGCTGGC GGTG GCGGGTAGCGACGGG      TTTGGAAGTCGCGAT  47 0
JTM80_RS15950 3886513 .. 3886536 +  -2.2  -3.05384   AAATCAGATTCCTCC          CCCGGCTGCC GGAT GTCACCCGGA           TTACCTACAGGGACG  42 121
JTM80_RS15955 3887607 .. 3887625 +  -7.4  -3.54424   AAACCGCTCCGGGAG             TCCCCCTT TTG AAGTGGGA             TTTAAAGGGATCGAC  64 519
JTM80_RS15960 3891304 .. 3891331 +  -5.6   -3.5525   GCTGTAGGTTTTTGA        CAGGATTTACTA CAAC TAGCAAAGCCTG         TTTACCCAAGTCTAT  56 176
JTM80_RS15985 3895884 .. 3895905 +  -3.6  -3.70902   CCCTGTCCCGTATCG           CTCACGGC AATCCA GGCGTGGG            TTTCGGTATGCCAGA  54 383
JTM80_RS16000 3899722 .. 3899751 +  -5.2   -4.3078   TCATTTCCTCGTGAT      CCCCGCTCAGTTTT AAGC AAAACT-A-CGGGG       TTTATTGGTGTGCTT  69 436
JTM80_RS16005 3900306 .. 3900343 +  -2.6  -4.32482   TGCTGCCGAGATCCT   TCTAGCGCTGGGTGCTG ATCTG CCGAACCCAG-GCTGGC   TTTTGGGTTATCGCT  60 21
        pdhA NONE
JTM80_RS16025 3906730 .. 3906743 +  -3.1  -3.75153   GTGCGTCTAGGATTA               GCACGC CGC GC-TGC               TTTAGCTTGGCCAGG  52 216
JTM80_RS16040 3909931 .. 3909945 +  -4.3  -3.53224   TTATCCTGCTGCCTT               TTGAG GTTCA CTCAA               TTTCGGCAAACCCTG  54 437
JTM80_RS16045 3911988 .. 3911998 +  -6.8  -4.66163   AAGTCCTGACTTTTT                 TCGC TGA GCGA                 TTTTTGGCTCAAAAT  79 422
JTM80_RS16050 3913157 .. 3913169 +  -4.8  -2.73441   CCGCGAGTTTCTGAC                CAGC GAAGG GCTG                ATTTAGGGGCTACTC  45 7
JTM80_RS16055 3914338 .. 3914355 +  -2.5  -2.61681   CTCGACCGCAGGATT             CAGCGGC AGTT GCGGCGG              GTTGTGGGATTCCAG  38 203
JTM80_RS16070 3916591 .. 3916605 +  -5.6  -3.11619   GCATTGAGAGGGTCA               GCGGTT CGA ATCCGC               TTAGCTCCATTCTTA  51 0
JTM80_RS16075 NONE
JTM80_RS16080 3921391 .. 3921420 +  -3.6  -3.91897   ATAGTAGGTCTCTCT       GGTGGCAAGG ATAGTACAGC CCTTGCTATC        TTTATGCGTCGAGAA  57 61
JTM80_RS16090 NONE
JTM80_RS16095 NONE
JTM80_RS16100 3924207 .. 3924218 +    -3  -4.59773   GGGGAGTTGTCAAGT                GTTT CTAA AAAC                 TTTTTCCAGATGGAA  66 283
JTM80_RS16105 3924458 .. 3924469 +  -2.2  -3.45047   GGAGCGGGAATAATA                GGGA ATGC TCTC                 TTAATATATTTCTAT  46 28
JTM80_RS16110 3925421 .. 3925434 +  -2.3  -3.14564   GAGCGTCGATGTCTT               GGAGA ATCG TCACC                TTGCTAAACAGATAC  41 511
JTM80_RS16120 NONE
JTM80_RS16125 NONE
JTM80_RS16130 NONE
JTM80_RS16135 NONE
JTM80_RS16140 3930598 .. 3930624 + -10.2  -3.16742   ACGAGATTGGCAACC         TCTACCCGATTC AAA GAATTGGGCAGA         TTGCTCAACATTACG  71 488
JTM80_RS16155 NONE
JTM80_RS16160 3935304 .. 3935317 +  -3.7  -3.21778   TGCCATCTGAGGACA               CGTCC ACCC GGTCG                ATTTTCATGTCATAC  47 358
JTM80_RS16185 3950015 .. 3950031 +  -5.7   -2.8552   TGCTGCGATATCCAG              CGGGAGC GCT GTACCCG              GTTTACTGGCTGGAA  51 394
JTM80_RS16205 3955668 .. 3955678 +  -4.6  -3.57171   GCGTACTTCTTGGAG                 CGGC CTG GCTG                 TTAATTGTGTTGTCT  54 73
JTM80_RS16210 3956140 .. 3956157 +    -4  -2.78679   GCGTATCGGAATCGG             CGGCCC ATGTGG GGGGCG              ATTTCCGTAGAGAAA  44 54
JTM80_RS16215 NONE
JTM80_RS16220 3958573 .. 3958586 +  -2.3  -3.85817   AAATAGCTTTTCTTG               CCAGA CTCT TCCGG                TTTCTAAAAGCGACT  53 507
JTM80_RS16225 3959846 .. 3959860 +    -7  -3.81146   TCAGTTTCTTCTAGC               GCTCCG TCA CGGCGC               TTCTTGATTGCCGCA  66 517
JTM80_RS16245 3965002 .. 3965013 +  -5.8  -2.52623   CTCCAGGCTGATTTG                CGAC CCCA GTCG                 ATCTTGTGCCAGAAA  49 70
        glcD 3968395 .. 3968416 +    -3  -4.14627   TGAAGTCCAAAGCGG           GGCTTTGA TTGGAT TCAAAGCA            TTGTTTGTCTAAAAA  59 245
JTM80_RS16260 3969779 .. 3969805 +  -3.6  -4.22338   GCTGACTAGCAAATA         GCAGGGTGGTTT ATC GGGTCACACTGC         TTTTGCAGTTGTGGT  61 25
JTM80_RS16265 3970982 .. 3971008 + -18.8  -5.16151   ATTTCGTTTTCAAGA         CTGCTGTGCGGC GAT GCTGCACAGCAG         TTTTTGTTGCGTTTC 100 86
JTM80_RS16275 NONE
JTM80_RS16280 NONE
JTM80_RS16285 3975012 .. 3975047 +  -7.5  -3.13899   CAATGGCAGCGACAT    GGGCGATTCGCAAAG CGATCC CTGCGGGAATCGCCC     TCTTGCTCGCAGGTT  59 203
JTM80_RS16290 3976344 .. 3976358 +  -4.2  -5.05782   ACGGCGCGGGCTTTT               TGCCGA CGA TCAGCA               TTTTTTGCAATAGCT  81 342
JTM80_RS16305 3981581 .. 3981601 +  -2.5  -3.31263   AAATAAAGATTTGCC            GAAGTGTTC AGT GATAACTTC            TTCTAAAGATCACGT  44 224
JTM80_RS16310 3982988 .. 3983031 + -10.4  -4.02424   TAAGCTCTGCGTAGT TTTTCCAGTATGGCGGCT ACTCTTTC AGTCGCCATACTGGACAC TTTGTAGTAGTTCAT  84 127
JTM80_RS16315 NONE
JTM80_RS16320 3985403 .. 3985413 +  -2.4  -5.00616   TTGAAAGGCGATCGC                 CGCC TCA GCCG                 TTTTTTCGCCAAACA  74 438
JTM80_RS16345 3993405 .. 3993438 + -26.9  -3.51708   TGGGAGTAATGATTG     GGAGAGAGGGAGGGC GATC GCCCTCCCTCTCTCC      TTCCTTTAAGGGATA 100 53
        clpB 4002138 .. 4002155 +  -4.1  -2.91383   AGTCCTAAATACATC             GGGTTTG CACC CAAAACC              TCTATAACTGGAAAT  45 121
JTM80_RS16380 4002741 .. 4002794 +  -6.9  -4.41348   AGCGTTCAGAATCCG TCACTCATCTTTCAAGCTG-CCTG TCTGCTT CAGGACAGCTTGGAAGATCAGCAA TTTCTTTGAAAGACC  74 41
JTM80_RS16395 NONE
JTM80_RS16400 4007748 .. 4007768 +  -4.7  -2.80816   ACGAACTGGCACACG            CTTCCTG ATTCATG CAGGAGG            TCTAATGCCTCAAGC  45 18
        mazG 4008850 .. 4008868 +  -2.5  -3.56821   CTCTTTGACAATACC            TGA-CCAA GCGT TTGGCTCA             TTTAGACGATATCCT  47 230
JTM80_RS16415 NONE
JTM80_RS16420 4010742 .. 4010780 + -17.6   -3.5771   CAAAGCGTGCAAGAT   CCCCCTTAAATCCCCCTT AAA AAGGAGGATTTAAGGCGG   TTTCCCCCCCTTTTT 100 106
JTM80_RS16425 4012460 .. 4012480 +  -5.3  -3.14881   GGCTTCGGCATGAAG            GGCGATCGC ATA GTGGTCGCG            TTCCTGCCCCGGTTG  49 468
JTM80_RS16435 4013440 .. 4013451 +  -5.8  -2.72991   CAGCGTCGCCACTTC                GCCT TCGT AGGC                 TACTTCAAACTCTGC  51 78
        ybaK 4014132 .. 4014186 +  -8.9  -4.65838   CTAAGGGAGAAAGAG AGAAGAACGAAGAACGAAGAG GTTTCGTTTTTCA TTTTTCGTTCTTCGTTCTTCA TTTTTCCCGTCTCTC  90 37
        hetZ 4020476 .. 4020490 +  -3.4  -5.79595   CGCTGTTGAACCACT               TGACCG GGT CGGACG               TTTTTTCTTTTCAAG  91 205
JTM80_RS16470 4021369 .. 4021391 +    -7  -5.60993   AACTAATCGACCCAA           TCCCGTGT GAATGAA GCACGGGA           TTTTTTTGTGCAAGA 100 95
JTM80_RS16480 4022975 .. 4022985 +  -2.4  -2.61695   ACACTACCTGCCCAA                 CGCC TTC GGCC                 ATCTTTAGCCATCGC  39 7
JTM80_RS16485 4023896 .. 4023937 +  -9.3   -3.5393   AGCGCAGCCGTCCCT GCTGCCAGCGGGGCTGACCG CTG CGATCGGCCAT-CAGGCAGC TTTGACACACCTGCT  69 193
JTM80_RS16500 4026802 .. 4026820 +  -5.3  -4.54477   CGCCAGTATCCGGTT            CCTA-CGC ACTT GCGATAGG             TTTTCTGGGTTTTGG  71 103
JTM80_RS16510 4029153 .. 4029163 +  -4.6  -3.55761   GGTTTCCGTTCGCGG                 CTGC TTC GCGG                 TTTCCGGAGTCGCTG  54 81
JTM80_RS16515 NONE
JTM80_RS16520 4031564 .. 4031575 +  -3.6  -3.01924   CAGGTACTTGCACAA                GTGC GATC GCGC                 TCTTAGCGGGCGATC  45 8
        ctaD NONE
JTM80_RS16530 4034176 .. 4034206 + -12.7  -4.74103   AAACTCATCACCCAA       CGCACGATTCTTC CCTGT GAAAAATCGTGCG       TTTTTGCATTCACGC 100 104
JTM80_RS16545 NONE
JTM80_RS16550 NONE
JTM80_RS16555 4045138 .. 4045168 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS16565 4047653 .. 4047664 +  -7.2  -2.77899   TGCCGTCGTGCGTAG                GCCG TCAT CGGC                 TCCTTGATGAAGCGG  51 201
JTM80_RS16580 NONE
JTM80_RS16585 4050464 .. 4050494 +  -2.4  -3.93057   TGGCGGCGACGCAGC       CCGTGGATGATGTG ATC CACATCCAGCAAGG       TTTCGTGGTTTTCGG  53 420
JTM80_RS16610 4056097 .. 4056108 +  -7.2  -2.60512   AGTGCGCCCAAGGGT                GCCG ATTC CGGC                 TAGATTGATGTTAAG  55 279
JTM80_RS16615 NONE
JTM80_RS16620 4057312 .. 4057330 +  -6.6  -3.34043   CTTCCAGCAGTTCCA             CCTGGCGC GGG GTGACAGG             TTCTCGGCTCCTCAC  56 184
JTM80_RS16645 4065248 .. 4065260 +  -5.5  -2.80988   CCGATCCCCGAAGGC                TAGGC ATT GCCTG                TGGTTGCTCCTATGC  48 23
JTM80_RS16650 NONE
JTM80_RS16655 NONE
JTM80_RS16660 NONE
JTM80_RS16665 4070669 .. 4070679 +  -2.4  -2.56596   AGTGGATCGAAAAGG                 ACGG GTT CCGG                 TGCATTGATCGACCC  39 91
JTM80_RS16670 4072029 .. 4072047 +  -7.4  -3.55815   GAACTGGCTTGGAAG             TCCCCCTT ATT AAGGGAGA             TTTAGGGGGATCTTT  64 301
JTM80_RS16675 NONE
JTM80_RS16680 NONE
JTM80_RS16685 4077213 .. 4077238 +  -7.5  -4.66833   GCCAGCGCTTTCAGG         GCCGCTTCCAT GCTG ATGGACTCGGC          TTTTTCGCCTTCAGG  79 513
JTM80_RS16695 4081887 .. 4081933 + -18.2  -2.79809   GCGAAGAGCGAAGAA TGAAAAGTGGGTGGCTGATCGC TTG GCGATTGGCCACCTGCTTTTTG TGGTTACGGTTTTTC 100 101
       groES 4088279 .. 4088295 +  -8.7  -3.06815   TTTTGGACAGGCGGC              TGCGGTT GCA AGCCGCA              TGTGTTCCGAGGCCT  65 56
        groL 4090202 .. 4090240 + -19.1  -3.85542   TCAAGAACATTCAGC   GAAAAGAGCGATCGTTC CAAGC GGGCGATCGCTCTTTTC   TTAGTTTTCTTCTAG 100 220
JTM80_RS16755 NONE
JTM80_RS16760 4097360 .. 4097392 +   -15  -3.58343   GAGTGCTGTGGGAAA      CCGAGAGCCTGA CCATGTGTT TCAGGCTCTCGG      TTTACGGCTGATCGG  91 142
JTM80_RS16765 4099261 .. 4099279 +  -7.4  -2.91681   CTCTAGCCATTTTGT             GTAGCTGC CGT GTAGCTGC             TCTATGGCGTTGCGG  57 44
JTM80_RS16770 4100103 .. 4100119 +  -2.1  -3.05844   CGAGCCAAAAGACCG              CCAAGCC GAG GGCGTAG              TGTTAAGCTGAGAAG  42 134
JTM80_RS16775 4101068 .. 4101081 +  -5.3  -2.74799   TGAAGAATAATCAAA               TCAGA ATCA TCTGA                CTTTCCCCAGTTCTA  48 31
JTM80_RS16780 4102055 .. 4102071 +    -8  -2.78712   TGTTACCCAAGTGCG              GCCGAT TGAGC ATCGGC              TGATTGAATTGAACC  59 339
JTM80_RS16785 4102865 .. 4102894 + -11.3  -3.14647   ACTGTAGCGATAGAG       GCGGCTGTCTCCC ACAT GGGCGATCGCCGC        TTCGGTGTCCTGGAT  69 468
JTM80_RS16805 4108552 .. 4108572 +  -3.2  -4.43844   GAACGTTGTGCCCAC            ACCTGGCA ACTGG TGTCAGGC            TTTTATCAATCGTCG  64 360
JTM80_RS16810 4111855 .. 4111866 +  -4.4  -4.08651   GGTCTAGGATAGATT                CGTT CCCA AACG                 TTCTTTCATTAAGCT  61 338
JTM80_RS16815 4112574 .. 4112585 +  -2.2  -2.60571   CTGCGTTTTATAGTG                GAGT TGCT GCTC                 ATTCCTTAAGCAATT  39 107
JTM80_RS16820 NONE
JTM80_RS16825 NONE
JTM80_RS16830 4116596 .. 4116623 +  -3.4  -4.15453   GATACTCCATACATT        CGCCACACA-CGT ATC ACGGTGTATGACG        TTTTGGGCTGGCTTG  59 126
JTM80_RS16840 4117809 .. 4117823 +  -2.8  -3.68827   GAATCAGATAGGCAA               TCAACA CCA TGTAGA               TTTGAATGGTGACTC  52 249
JTM80_RS16850 4119761 .. 4119794 + -15.3  -4.56367   CATGAATAAACCGGG     CAGGCTGGATGGGGC GATC GCCCTCTCCAGCTTG      TTTATTTCTCCCCTA 100 83
JTM80_RS16855 4120890 .. 4120927 +  -2.7  -3.66874   TTAGCTCTAAAGCGG   GTTATGCGTTGTACCGAA ATA TTGGGT-CAACGCACTGC   TTTCCGTGAAATTAA  52 320
JTM80_RS16860 4121675 .. 4121691 +  -2.9  -4.82901   ACTGCTCCAATTCAT              CAGGCTT GAA AAGCTGG              TTTTTCTCAACGGCC  73 416
JTM80_RS16885 4126692 .. 4126703 +  -3.6  -2.50784   TCGCCGAATTAGGTA                CGCT TCTT GGCG                 CTCTTCGTGGGTTTC  41 273
JTM80_RS16900 4132165 .. 4132176 +  -5.8  -3.54129   TGTCCCAAGCTTGCG                CCTG TGAT CAGG                 TTTCGAGACAATATC  59 126
JTM80_RS16905 4133572 .. 4133582 +  -5.4  -3.37796   ACCCAGTTCACCCGC                 TGCA CGG TGCA                 TTCTGGCTGGTGAAC  53 278
        rlmN 4135843 .. 4135883 +  -7.7  -5.00339   GGGAAGAGGAAAGAG  AGAAGAACGAAGAGGGAAG AGG TTTCGTTTTTCGTTCTTCG  TTTTTCGTTCTTCGT  87 41
JTM80_RS16925 4137942 .. 4137961 +   -10  -3.96624   TCCATCCCGCCTCAC            CTCTCCAG CCAA CTGGAGGG             TTTATCATGGGCATA  80 65
JTM80_RS16930 4138781 .. 4138795 +  -7.1  -3.62756   GGCGGCCAACTTTTC               GGGGT TTCCT ACCCC               TCTTTAGTTTGGACT  62 396
JTM80_RS16940 4140648 .. 4140692 + -12.4  -3.36492   GAGTAACTGCTGACT GAAAGCGTGGGC-GA-TATTGC TCT GCAAGACTTTGCCCACGCTTTC TTATGCGCTTAAAGA  80 59
JTM80_RS16950 4143643 .. 4143654 +  -2.2  -3.96148   CACAATTGTCCAATT                CTCG CTGC TGAG                 TTTGTCGTGGGCAAA  56 498
JTM80_RS16965 NONE
JTM80_RS16970 NONE
JTM80_RS16985 4153023 .. 4153037 +  -7.8  -3.14344   CGCGCAACGATTCAC               GGCCTC AAA GAGGTC               TTCGTGCAGGAGGTC  59 236
JTM80_RS16990 4154240 .. 4154250 +  -8.2  -2.57132   GATGGAAGGCGCAGC                 CCCC GGC GGGG                 ATTGTCAGGGGCACA  53 316
JTM80_RS17000 NONE
JTM80_RS17005 4157673 .. 4157686 +  -3.1  -3.64912   AGACTCCGACTTTTG               GTGTT CCGC AACGC                TTGTATCTCTACCTC  49 50
JTM80_RS17010 4158538 .. 4158555 +    -7  -3.27022   TTTGGAGCGGGCGAT             CGCTCT AGGCTC AGAGCG              TTAATCTCAGCTCCA  58 273
JTM80_RS17015 4159937 .. 4159968 +  -2.2  -3.25015   TTCTTAGGGAACTAG      TTGGGGAACTAGTT AGGG AACTAGCGTCCCGG       TTCCTGATGCTTCGC  44 26
JTM80_RS17020 4161669 .. 4161695 +    -6  -3.91911   TCCTTTGAAGATTAG         TTACTTGAGGTA CTT TACTTGAAGTAA         TTTACTTGAAGTAAA  64 128
JTM80_RS17035 4164780 .. 4164796 +  -7.9  -3.57561   GTGTATACACAGTAG              CCCGCTC TGG GAGAGGG              TTTAAAGCCTTCGGC  64 281
JTM80_RS17040 4165721 .. 4165766 +  -9.7  -2.55015   AAACCCGGTTCAAGG CCTAAGCGCTAC-GCCCCAGCT CCT AGCTTGGTTAGCAGCGCTTGGG TAGCTTGGGTCGGCT  64 85
JTM80_RS17050 4169038 .. 4169060 +  -8.5   -2.5335   GGATCATGGATTTCC           CGGCAATTT GGCTG AAGTTGCCG           ATGTGTATTTGGTTA  57 323
JTM80_RS17075 4174189 .. 4174203 +  -2.1  -2.65298   AATCAAGCTGTCATT               GTCTT GGAAG AAGGC               GTTGTAATAAATCCC  38 495
       psb28 4175555 .. 4175567 +  -5.5  -4.08767   TCGATGGGGTCGCGC                TCCTC GAT GGGGA                TTTTGCCACCGTCGC  64 255
JTM80_RS17100 NONE
JTM80_RS17105 4181016 .. 4181048 +  -4.1  -4.26076   TTTGGGAAAATGGTT      GAGCTTAAGTCGTCA TCT TGATGAAATAAGCGC      TTTTGATAGCGATCG  65 192
JTM80_RS17120 4183450 .. 4183470 +  -6.2  -3.27525   GCGCTGGGTAGACAT           TTCGACGGC GATT GCC-TCGAA            TTGCGTTTCCACGCA  54 175
        psaI NONE
JTM80_RS17135 4187166 .. 4187193 + -13.4  -4.27316   CCTAAAATTTTCAGA        GGGGGCGTGGAT CGGT ATCCGCACCCCC         TTTTGCGTTAGAAAG 100 146
JTM80_RS17140 4187502 .. 4187534 +  -3.5  -3.75024   GCCGGTTTCTTCGAC     CTGTTGGGCGATCGT GCCCA GCG-T-GCCCAGCAG     TTCTTCCTGGTCGGG  52 148
JTM80_RS17160 4193253 .. 4193275 +  -4.1   -3.2614   CTGTTTCAGGGCTAA          G-GCTAGGGC TAAA GCTCTGGCGC           TTCCTGTAAAGAATG  48 26
JTM80_RS17165 4193734 .. 4193755 +  -2.3   -3.2032   CGCCACGAAGCGATC           GCAGGCGA TCGCCCC TC-CCTGC           ATTTTGCTCTACCCC  44 178
JTM80_RS17170 4194125 .. 4194153 +  -3.8  -3.72576   GCACTAGGGCAGCGA       TT-CGGCTCGGCG CTGC CGATGGGCCGCAA        TTTCCTGCCGCAGGG  54 118
JTM80_RS17190 4198855 .. 4198867 +  -7.7  -3.78775   CCTGAATATCAGCCT                CCAGA TCT TCTGG                TTTGGTGGTGGGCGG  66 139
JTM80_RS17200 NONE
         frr 4200847 .. 4200869 +  -9.2  -3.67588   CCGATATCACGACGG           TCTAGCGTTA GAT TTACGCTAGA           TTTGCGTCAAATTTG  73 21
JTM80_RS17210 4202410 .. 4202436 +    -8  -2.59564   TTCAAAGATATGGGG         CAGGTCGGCATT GGG AATTTCGGCCTG         ATTCTGGAGTCGGAA  53 288
JTM80_RS17220 4206529 .. 4206541 +  -4.7  -3.30441   GTGGGTGGTGAGTCG                CAGCG TGA CGCGG                TTGTAGGCAATCGTC  49 231
JTM80_RS17230 NONE
JTM80_RS17235 4209160 .. 4209184 + -16.5  -3.60098   GCTATGGGTTTGAAG          TCCCTCTCCCG CTC TGGGAGAGGGA          TTTAGGGTGAGGGCT 100 424
JTM80_RS17245 NONE
JTM80_RS17250 4212774 .. 4212786 +  -9.1  -3.06265   CAAACCAGCGCTCAA                GCGAC TGT GTCGC                TGTCGTTTCTCCCGT  65 116
JTM80_RS17320 4230236 .. 4230251 +  -6.1  -2.94293   ACCTCAGTTTTACTT              GGAGC GATATG GCTCC               TGATTGTCTTCAGCG  52 40
JTM80_RS17325 NONE
JTM80_RS17330 NONE
JTM80_RS17335 4232772 .. 4232788 +    -5  -4.25104   CTGAACCCTAGCCCA              AGCGGG GCTGA CCCGCC              TTTTCATCGCCCCAA  66 148
JTM80_RS17345 4235494 .. 4235504 +  -3.2  -3.54424   GCTGCACTCGCTGGG                 GCTG CTG TAGC                 TTTAAGGCGCTCAGC  49 16
JTM80_RS17350 4236505 .. 4236518 +  -3.7  -3.73224   CCATAATCTTTGGCG               CAGGC GATC GCCCG                TTTGGTGAGCGATCG  54 323
JTM80_RS17360 4238110 .. 4238122 +  -6.2  -4.60924   CGCCTTGGTGCGGCC                CGCG CATTT CGCG                TTTTTACAGGATTTC  76 48
        psaJ 4238447 .. 4238479 +  -7.8  -5.10064   CAGGGAACCCAACGT     TGA-GGCCGCTTTCT GCTG AGGAAGCGGTCTTCG      TTTTTATCTGTTGCG  91 155
JTM80_RS17370 4240205 .. 4240243 +   -11  -3.03007   AGTAGTTGCACCTTG   CATAAAGGTGGACAACGC GAT GCGCTGCCCATCCTTATG   TCTTCAGGGCATCTT  74 288
JTM80_RS17390 NONE
JTM80_RS17395 NONE
JTM80_RS17400 4249188 .. 4249205 +  -9.1  -3.20382   CGAAAAATCAAACTC             CCCTGGC TGTT GCTAGGG              TTGCTGGGTGTGGCA  67 273
JTM80_RS17405 4250688 .. 4250700 +  -3.3  -4.07568   AAGCTGCAAATAGAT                CGTGC CGG GCAAG                TTTTGGGCAAAAGCG  58 191
JTM80_RS17425 4256892 .. 4256933 +  -4.5  -4.43949   CGGGTTGATGCTGAA CGGTCTATTGCCTAC CGATTAAGTGTT CTGGGCAGTAGACCG  TTTGTCTTTAGTTTT  68 47
JTM80_RS17430 4259693 .. 4259722 + -15.7  -3.75378   TTCAGAAAAACAAAC       ACCCCCTCGGGTG ATTA CATCCGAGGGGGG        TTGTATTATCGCCCT 100 85
JTM80_RS17470 4268794 .. 4268818 + -13.5   -4.7078   ACCTTTAATCAGAAA          GGGTGGGACGC AGT GCGCCTCACCC          TTTTTAACTCGTTAA 100 126
JTM80_RS17480 4270105 .. 4270140 + -13.4  -3.53841   AAGGTGCATGAGCAG    CAAGGTGCATGAGC CAAACGCA GCCCATGCACCTTG     TTATAGATTTATTTG  86 81
JTM80_RS17500 4273451 .. 4273498 +  -4.1  -2.66733   TTCAGCACGGCATCA CTCTACCG-CGCCCAGC-ATCCGC AGG GTGGCCCGCTGTGCGTCGGT-GAG TCCTGTGACTTGGGC  43 110
JTM80_RS17510 NONE
JTM80_RS17515 4280367 .. 4280382 +  -4.7  -2.90813   TTCCAAGCATCTCTT              CCTTG ATTTCA CAAGG               TCATTTCACCCACTA  47 150
JTM80_RS17520 NONE
JTM80_RS17525 NONE
JTM80_RS17530 NONE
JTM80_RS17535 4284537 .. 4284564 +  -7.7  -5.46706   AGAACCTCTGCATGG        CCGCCTGTG AATTCAGCCC CGCAGGCGG         TTTTTCTTTTCGGCT 100 68
JTM80_RS17545 NONE
JTM80_RS17550 4288299 .. 4288317 +  -8.9  -4.66609   GATACGAGCCTGTTC             TGGCATC AACCC GATGCCA             TTTTTCAATGGGCTG  86 184
JTM80_RS17570 4290721 .. 4290776 + -10.1  -2.96369   TGAGTTTTGGAGTGG GGATTTTGGATTTTGGA-TTGAG-GGG ATGC CCTGCTAAAATCCAAAACCCAAAATCC TCCTTATCTGTTCTT  67 339
JTM80_RS17595 4295696 .. 4295706 +  -3.2  -2.91924   TGTTGCGCTAAAGTT                 TCTG AAT CGGA                 GTTTGTGCAACATCC  42 155
JTM80_RS17600 4296837 .. 4296847 +  -2.6  -3.06515   TATGTGGGTCATGAC                 TTAA CAC TTAA                 ATTTTCGAGGTCACC  42 226
JTM80_RS17605 4297409 .. 4297429 +  -8.3  -4.15044   TTGTGAGTCCAGCTT            GGTTGATGG TTG TCATCGACC            TTTCTTGGGGCACAA  76 152
JTM80_RS17610 4298474 .. 4298491 +  -6.3  -3.10612   CTATACTGCATGAAA             GTACCTT TACG AAGGTGC              TGTCTTAGAATTGCG  53 200
JTM80_RS17615 4299335 .. 4299367 + -13.6  -4.41177   AAAAAACTTGTAAAA     GATGCGATCGC-CTT TCAT GAGTGCGATCGCATC      TTTTCGCTTTCTCTG 100 104
JTM80_RS17650 NONE
JTM80_RS17655 4307156 .. 4307178 +  -7.7   -5.4477   ATAGGTTTTCGCGAC          G-GGGCAGGC TCAG GTCTGCCCTC           TTTTTTTGCGGGTTT 100 107
JTM80_RS17660 4309302 .. 4309317 +  -6.1  -2.62184   TTCGGCCATCGTGGT              GGCGA TCGCCT TCGCC               TGCTCTGCCGAAAAC  48 458
        mgtE 4312565 .. 4312594 +  -4.3  -4.30014   TAGCCCTTTGACTAA       TACTCTGGCTAGA TTGC TCTGGCTAGACTG        TTTTGCCTTCGTCAA  66 64
JTM80_RS17680 4313162 .. 4313172 +  -3.2  -3.08133   CCAACTTCGTCGGCC                 TCCT AGA AGGG                 TTCAATGGGTGGATG  44 41
JTM80_RS17685 NONE
JTM80_RS17690 NONE
JTM80_RS17695 4315478 .. 4315496 +  -9.6  -3.55548   GAAACCGCCTTAAAG             TTCCCCTT TTC AAGGGGGA             TTTAGAGAGATCTTG  74 158
JTM80_RS17700 NONE
JTM80_RS17705 NONE
JTM80_RS17710 4317434 .. 4317452 +  -2.2  -3.53012   CTTCATTGCCGAAGC             GCGGCTCG ACA CTGGCCAC             TTTGGGAAAGGGCGA  47 185
JTM80_RS17720 4318391 .. 4318407 + -12.3  -2.71731   ATCAGCACTGGCAGT              GGCTCAG CCG CTGAGCC              TGATTCGCAAATCAG  74 12
JTM80_RS17730 NONE
JTM80_RS17735 4322139 .. 4322179 +    -4  -3.31248   GCGATCGCCCTCTCG CACTGCCCGC-GTGC-CCTG GCG CAGGAGTGTTGTAGGCAGTG TTGTAGGCAGTGTTG  47 237
JTM80_RS17750 4328237 .. 4328264 +  -6.2  -3.60475   ATTGGGCGTGATTGG        GCGTGATTGGGC GATC GCGCAGTCACCC         TTTAAACTGGAAATT  59 278
        gatA 4332682 .. 4332693 +  -5.8  -2.78384   TAACCGCCAGCAGCA                GCCA GGAT TGGC                 TATCCTCGCGGGCAA  51 295
JTM80_RS17775 4333867 .. 4333884 +  -5.5  -2.71144   GGTCACCATATTACA             TGGCCAT GTAA ATGGCCC              TAGTTGAAAGACCTA  47 45
        pyrF 4338629 .. 4338660 +  -3.6  -3.60234   GGCAGCAGACGTTTG      CCCAGACTGGGCC TGGTAGC GGCGCAG-CAGGG      TTTCCAGGTCTGTCG  51 366
JTM80_RS17800 4340431 .. 4340455 +  -6.3  -4.87291   CACCCCCTTAAAAAG          GGGGGAAACTG CCT TAGAGTCCCCC          TTTTTCCTTAAGATC  78 130
JTM80_RS17805 NONE
JTM80_RS17810 NONE
JTM80_RS17815 4342306 .. 4342318 +  -4.1  -4.14764   TTACCAAGTAAGATC                GCGAA GTT TTTGC                TTTAGTTCTTTCCAA  61 30
JTM80_RS17820 4343284 .. 4343300 +  -2.2  -3.06183   AATCTGAAATCAAGC              CCCGAT TCATC ATCAGG              TTGACTCACCATGCC  42 90
JTM80_RS17825 4344094 .. 4344108 +  -4.2  -2.64735   AGCGCTTTGTAGGCT               GCGATT CCG AACCGC               TACTCTGGATCGAGT  44 29
JTM80_RS17835 4346143 .. 4346169 + -11.6  -2.73681   CCAAGTTCTGAACGA         TTTCTCGCGGAC GCA GCCTGCGAGAAA         TCGTTCAACTGCGTA  71 96
JTM80_RS17840 4348091 .. 4348102 +  -4.4  -2.80935   CTCAACTCCTCAATC                GGTT GTTC AACC                 TCTGGTAAATCAAAT  44 83
JTM80_RS17855 NONE
        pgeF 4352115 .. 4352128 +  -4.5  -3.50588   CAGAGAATTTTCTGG               CGGCGG ATG CC-CCG               TGTTTCGTCTCCCAT  54 137
JTM80_RS17865 4353558 .. 4353590 + -10.7  -3.02144   GTTCTGGGTTTTGGA      TGATTTCTTGCGGGC CCA GTTTGCGAGAAATCA      TCTTGCGAGAAATCA  70 127
JTM80_RS17870 4354816 .. 4354846 +  -2.6  -3.15544   CGGCCGCGGCTTGCA      CAGACTGCGCGGCT GCCAG GGCCGC-TAG-CTG      TTCCTCAAGCTGCGC  41 142
JTM80_RS17880 4360769 .. 4360795 + -16.7  -2.62184   TACGCAGTTGGACGA         TTTCTCGCGGG CTGCA CCCGCGAGAAA         TCGTCTAAAACCCAG  91 178
JTM80_RS17885 NONE
JTM80_RS17890 NONE
JTM80_RS17895 4364804 .. 4364843 +  -8.5  -3.04792   CAGCGGCAAGTTCTT  TTGGGCGATTCGCGAAG CGACCC CTGCGGGAATCGCCCGC   TGTTGGGCATCCTCG  60 354
JTM80_RS17910 4367793 .. 4367805 +  -3.3  -3.17392   GTGGGCCGATCGCGT                CTGCG ATT CACAG                TTAGCTTCACAGCTA  44 57
JTM80_RS17915 4368666 .. 4368692 +   -21  -3.31461   CTGGATTTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCGACTGCGTA 100 103
JTM80_RS17920 4369947 .. 4369960 +  -3.1  -3.26568   CCATTCAAATCTGGA               TGGTGC AAC GC-CCA               CTTTTGTGGCTCTAC  46 89
JTM80_RS17925 NONE
JTM80_RS17930 NONE
JTM80_RS17935 4374766 .. 4374824 +  -7.7   -3.4243   AACGAAGAGAGAAGA GAGAAGAGAGAAGAGAGAAGAAC ATTTTCATTTTTC GTTCTTCATTCTTCGTTCTTCTC TCTTCCTTTTACCTC  62 43
JTM80_RS17970 NONE
JTM80_RS17975 4384245 .. 4384258 +  -8.1   -5.3472   GTGGCTGCAAATTCT               GAGGC AGTT GCCTC                TTTTGTTTGTTTTTT 100 156
        thyX 4386435 .. 4386455 +  -6.9  -3.58536   CTCACCCTGAGGATT            TCCTAATCG CAA CGATTACGA            TTTCAAACTACGTTT  62 31
JTM80_RS17990 4386963 .. 4387006 +  -4.8  -2.50816   TTGCGGTATGAATGA GAAAGATTCTGGATTCAAGTT TGA AACTTAAGTTCAGAA-CGTTC GTTCATGCCTGAACC  44 157
JTM80_RS17995 NONE
JTM80_RS18025 4399347 .. 4399359 +  -2.7  -4.11773   AATCATTCTGTTGTG                CAGAA GCA TTTTG                TTTTACAGGCTGTTT  56 84
         dps 4400589 .. 4400602 +  -3.7  -4.22883   AAATCTTTGAGACCA               GCGGC GATC GCCCC                TTCTTTTGCCTCCTC  62 525
JTM80_RS18070 4409191 .. 4409201 +  -4.6  -2.62936   ACCTCAATTAATTTC                 CGGG CAC CTCG                 ATTAATTGCCTGATT  44 50
JTM80_RS18075 4409996 .. 4410028 + -13.5   -2.8294   AGATGAAGAAGCACA      GAGCGGGAGAGGG ACTTCAA CCCTCTCTTGCTC      TCCTTCTCCCAAGTC  79 51
JTM80_RS18125 4419919 .. 4419932 +  -2.3  -2.79302   GTTTGCCCGCGTACC               CGCAT GTTA AAGCG                TCTGCTGACCCTAAT  39 16
JTM80_RS18130 4420424 .. 4420435 +  -2.2  -2.79796   ATCTCGCCTACCATG                C-CCG CTT CGGCG                TGTCCTGCAATCACA  39 129
        cobW 4422484 .. 4422494 +  -5.4  -2.73771   CGTTAGACAAAATCG                 CTCA GGC TGAG                 GTTTCGCACATCTAC  48 163
        ppk1 4427061 .. 4427083 +  -9.1  -3.01924   CGATCGCCCTCAGTG          CCCCGGC-CG AAGC CGAGTCGGGG           TATTCCACCACAATC  60 112
JTM80_RS18165 4429630 .. 4429651 +  -7.9  -3.35992   ATTCAAGAGTGAGCA           GGGTGCTTG CTTT CAGGCCCCC            TTGCTTCCGCTGCCT  62 42
JTM80_RS18180 NONE
JTM80_RS18185 4435262 .. 4435294 +  -8.5  -3.96298   TACGGTTTCTCGCAG     GCCCCGGTTTTTCT CGTTGT AGGGAA-CCGGGGC      TTTGCTTGATGCGTC  72 51
JTM80_RS18190 4436328 .. 4436349 +    -3  -3.61398   GATCTCCGCAGGCGG           C-GCGAGCT GCTGG AGTTCGCCG           TTGTTCAGCACGGCA  49 520
JTM80_RS18220 4441841 .. 4441864 + -13.2  -4.52142   ACAACAGTTCAAATG          GGGAGTTCAG ACCG CTGGACTCCC           TTTCTGTTTTCTAGT 100 71
JTM80_RS18235 4444836 .. 4444847 +  -7.2  -3.55761   GACCCCTGAAAAATA                GGGC GATC GCCC                 TTTCAAACATGCATC  64 25
JTM80_RS18240 4447161 .. 4447181 + -11.1  -3.74747   GAAGAGATCCCCCCA            ACCCCCCTT ACT AAGGGGGGC            TTTGCTAGGCATTCC  82 40
JTM80_RS18245 4448844 .. 4448870 +  -2.3  -4.14511   CCAGTTGCTCTCATT        TAC-AGGATTGC TTTT GCAGTCCTCGGA         TTTTGGCGTGCGCTT  57 382
JTM80_RS18250 4451403 .. 4451432 +  -7.9  -4.96848   CCCCAAGCCTATGAA       TGCACCTCAGAACT ACA AGA-CTGGGGTGCA       TTTTTCTGTCGCAAG  87 178
JTM80_RS18255 4452028 .. 4452042 +  -4.2  -3.05844   CGCAAGAACGCGCTA               GGATGG CGG CCGTTC               TCTTGCAATCCGGGC  48 86
JTM80_RS18260 4452931 .. 4452949 +    -3  -5.14965   ATCACTAGGGTGGCT             CGCGCC AGGTCAC GTCGCG             TTTTTTCGTCAAGCT  78 325
JTM80_RS18270 4456669 .. 4456682 +  -8.1  -3.25479   ATCGGCCAGCACCTC               TGGGC CCTC GCCCA                TTGCGTCTTTCGTAA  59 413
JTM80_RS18280 4459117 .. 4459135 +  -2.3  -4.58283   CGCCCGTCGCCCGGC             CGGGTTG GGTTG CAGCGCG             TTTTTCCACAGCTTA  66 289
JTM80_RS18290 NONE
        folB 4461160 .. 4461172 +  -3.4  -4.07568   GAAACTAGCACAATT                TTGC GTAAA GCAA                TTTTACAAAGCCCAA  56 33
JTM80_RS18300 NONE
JTM80_RS18305 4463277 .. 4463287 +  -5.4   -3.0976   ATCGCAAATCCAAAA                 TCGA GGA TCGA                 TATTAGGGTGTTGCG  51 131
JTM80_RS18315 NONE
JTM80_RS18320 4464706 .. 4464717 +  -7.2  -2.71791   GACAAGAAACCAGCC                GGGC GATC GCCC                 ATTTGGCAACACCAT  56 90
JTM80_RS18330 4467545 .. 4467570 +  -6.9  -4.63486   TGGAGTGATGGGGAA         GAGGGAAGAGG GGAG CTTTTTCTCTC          TTTTCTTACCCCACT  79 58
JTM80_RS18345 4471677 .. 4471717 +  -5.3  -3.31322   TGATGTGTCATCTGG  CTGACTGTCATCTGGCTGA CTG TCATCTGGCTGACTGACAG  TTCTAGCGACTTGAA  53 84
         ffs 4471856 .. 4471872 +  -2.1  -4.95896   GGGATGCTTGTAGTA              GGCGTGG TCT CCGGGTC              TTTTTGTGCATTTAT  70 6
JTM80_RS18355 NONE
JTM80_RS18360 4473422 .. 4473438 +  -4.3  -3.05384   ACATTTTGCAGCAGG              GCTAGCT AGC GGCGAGC              TTGGATGCGACCCAG  48 21
JTM80_RS18380 4485836 .. 4485864 +    -3  -3.52192   CGGCAAAGCGTGAAC        CCCAGGCAGAAA AAGCA TTTCAGCCAGCG        TTCTATAAAATTGGG  49 28
JTM80_RS18385 4486046 .. 4486060 +  -6.4  -5.03747   TTGGCCTTCTTGCAT               CTGGTT TGT AGCCAG               TTTTTTAGGCAATTT  81 65
JTM80_RS18390 4487702 .. 4487715 +  -3.7  -4.20696   CGCCAAAGGTGTCCC               GCGCC CACT GGCTC                TTTTCCAGTTCGTGA  62 167
JTM80_RS18405 NONE
JTM80_RS18415 4493785 .. 4493798 +  -3.1  -3.53091   GAGCCCATGGCAAGC               G-GGGA GCA TCCCAC               TTTCGCGAAAACAGT  49 175
JTM80_RS18420 NONE
JTM80_RS18425 NONE
JTM80_RS18430 4496725 .. 4496738 +  -6.7  -3.80535   ATGCGACCTCCTCCC               CAAGC CTGG GCTTG                TATTTTCTAAAGGTT  64 334
        ribA 4503141 .. 4503188 +  -6.1  -2.68434   CCGTGTCGCTCAGAC CGCCCCGCTGTCGCCGGTCGTC ATAGA GATAGTCGGCG-CGGCCAGGCG TGATGTAATCTGCCC  48 403
JTM80_RS18465 4504816 .. 4504844 +  -8.2  -4.36595   ACAGTTTATACGAAA       GCCCCTTGAGTTT CAAT GGACTCA-GGGGC        TTTTGAATTTGACTG  79 82
JTM80_RS18475 NONE
JTM80_RS18480 4508336 .. 4508347 +  -4.4  -2.62263   GCGCGATAGCCCTGT                TTGC CCCC GCAA                 TGATCTAACCCGGCT  44 6
JTM80_RS18485 4509009 .. 4509029 +  -4.7  -4.11394   GAATCGAACCCGCAT            CAACAGTTT GGA AGACTGTAG            TTTTACCACTAAACT  64 152
JTM80_RS18500 NONE
JTM80_RS18505 4513709 .. 4513719 +  -2.4   -2.9039   TAGGAAGGACGACCC                 AGCG ATG CGCC                 TGTCTCAGATGCTAT  41 112
JTM80_RS18510 NONE
JTM80_RS18515 4516516 .. 4516542 +   -21  -3.28712   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAAAACCCAA 100 336
JTM80_RS18520 4517614 .. 4517624 +  -3.2  -3.53091   GGGGGCAAGCGGGAA                 TCTG CCC CGGA                 TTTGCCGAGGGCGAT  49 140
JTM80_RS18525 4518101 .. 4518111 +  -3.2  -4.48175   GGAGATCGGTAAAGT                 TGCA TAT TGCG                 TTTTGATTAACTTTT  64 207
JTM80_RS18555 4532924 .. 4532934 +  -2.4  -3.67517   CCGCCGTCACCACCA                 GCAG CAC CCGC                 TTTACCGTGTTCATC  51 468
        recQ 4539341 .. 4539357 +  -6.5   -3.1372   CAACGTGGATTTCAT              CCTGATC AAT GAGCAGG              TATTCCTGAAAGCTA  52 206
JTM80_RS18600 4542124 .. 4542134 +    -4   -3.6502   GCATCCGCCAACTAT                 TTTG GGT CAAA                 TTTGGGTCAAAAATC  52 199
JTM80_RS18610 4543366 .. 4543384 +  -7.4  -3.74693   GGCTTGCCCCAGCCC             GCTCTGAT CCG ACCAGAGC             TTTAGTACCGTCCCA  63 475
        yidD 4547834 .. 4547847 +  -5.9  -3.57144   CCATGCATGGGGCGA               TCGCC CCAC GGCGG                TTTCAAAGTCGAGCG  55 226
JTM80_RS18670 4555630 .. 4555664 +  -4.2  -3.51934   AGCGGTCGGTATGAC    GGGATCTTGAGGGGC ACAGAA GCCCAGCGAG-TCCC     TGTTTCTGAAAAGAA  54 27
JTM80_RS18680 4557540 .. 4557556 +  -6.5  -3.86897   CTGTGGGGTAAGCCG              CTACCGT TGA ACGGCAG              TTTCTCGGACATCAA  67 232
JTM80_RS18710 NONE
JTM80_RS18715 4581983 .. 4581994 +  -3.6  -3.91144   TGACAACATCGTGGA                GCGC TGTC GTGC                 TTTCTCCGATGTCAG  57 268
JTM80_RS18720 4582884 .. 4582927 +  -7.2  -3.08679   AACCGTAGGGCTGCA CCCAGTCTCGCGCCTGCTGCC CCA GGC-GTTGCCGCAGGTCTGGG TCTTCGATAAGCAAC  54 112
JTM80_RS18750 NONE
JTM80_RS18755 NONE
JTM80_RS18800 4604796 .. 4604808 +  -3.4  -4.19735   TATTTGGGAATTTTT                TAGC AATCG GCTA                TTTCGTTTTACCCCC  59 474
JTM80_RS18820 4609190 .. 4609220 +  -9.6   -5.4588   GCGAAAACGAGGAGA       GGGAGTGCGGGAGC TAA GCTGCGACACTCCC       TTTTTTGTGCTTTTG 100 70
JTM80_RS18835 NONE
JTM80_RS18840 4612747 .. 4612759 +  -7.7  -3.85567   CGCATAGGGAAATGT                GTCGA TTC TCGAC                TTTGGATTTGCGATT  69 166
        lysA 4620677 .. 4620708 + -14.6  -3.53012   ACTGATGCAGTTGGA      CGATTTTTCGTGGGC TGT GCCCGCG-AAAATCG      TTTAAAGCCCAGAAA  89 88
        cdaA NONE
JTM80_RS18875 4623154 .. 4623164 +  -2.4  -3.18044   GCAATTTGTCTGGAT                 CTGC AAT GCCG                 TAATTTTCTGGAGTG  42 199
JTM80_RS18880 4624130 .. 4624157 + -10.6   -3.6715   TAACGCGCTAATTCA        CGCGATGGGTTT GCAG AAGTCCGTCGCG         TTTCCGCTTGCGTCG  80 159
        pheS 4631385 .. 4631402 +  -3.4  -4.34402   CTCTACAAGAGCGAT             CTG-CGC TTTTT GCGGCAG             TTTTAGTCTGGCAAG  61 2
JTM80_RS18920 4632153 .. 4632183 +  -4.6  -2.92653   GCTGATACACGAGAA       TCGCTGGGGTGC AAGTAGA GCTTTCCAGCGG       ATTTCTCAAGCTCCT  47 8
JTM80_RS18940 NONE
JTM80_RS18945 NONE
JTM80_RS18950 4644511 .. 4644521 +  -3.2  -3.50393   AGGTTTAGCTGGTTA                 CCTT TTA AGGG                 TTCTCTCAAGTAAGA  49 294
JTM80_RS18955 4645262 .. 4645286 + -16.5  -3.60475   GAGCCGGATTGGAAG          TCCCTCTCCCG CCT TGGGAGAGGGA          TTTAGGGTGAGGGTT 100 135
        radA 4652946 .. 4652959 +  -2.3   -5.0133   GTTTTTTGCATTTAC               GTTGC GATT GCTAC                TTTTTTCCCCAGGTC  70 316
        ppk2 4654057 .. 4654067 +  -6.8  -3.72695   CAACGAGCAGTTCTT                 CGTG CCC CACG                 TTTACTAGCAGCGAT  64 7
JTM80_RS19000 4656730 .. 4656755 + -10.5  -4.22948   CTAATAGTGACAAAA         GGCGCACTTATC CAA GA-AGGTGCGCC         TTTTCCCTAAATTTT  88 240
JTM80_RS19010 4658827 .. 4658870 +  -9.1  -4.53777   TACGAGAGCCTCTTA TCAAAAGG-CCAGTCTCC AAACTACGC GAAGACTGGCCCTTTTGA TTGTTTTTGATTAGG  86 82
JTM80_RS19015 4660231 .. 4660249 +  -3.1  -2.65815   AAAGCGAATCCGATC             GGGCA CCTTGATCT TGCCC             TCCTGTCGCTGTCGC  40 508
JTM80_RS19025 4662364 .. 4662389 +  -9.7  -4.04174   TGTAGGGCTTGGGGA         GAGTGTGGGGC GATC GCTCTGCACTC          TTTGCTTCTCTGCAC  80 85
JTM80_RS19030 4666684 .. 4666716 +    -4  -3.97368   GCGGCTGGTGCCGAG     TC-GCCGGGCCAGCG CTGT CGCTGTCCAGCCCGA      TTTCTGGCTTGCCGC  60 138
JTM80_RS19040 NONE
JTM80_RS19045 4672221 .. 4672240 +   -10   -5.9667   CTTGGTAACTAGAGA            CAAGGGGT TTCG GCCCCTTG             TTTTTTTGTCTTTTT 100 79
JTM80_RS19050 4673616 .. 4673628 +  -4.7  -3.17075   GACAGATGAAAAAGT                CGCGC CGT GCGCC                TTCGCTTAGGGACAG  47 422
JTM80_RS19065 4676742 .. 4676754 +  -6.3  -3.53224   GCGACATATCTTTGC                CAAAG CCG CTTTG                TTTGAAGCCGCCGTG  58 436
JTM80_RS19075 4681251 .. 4681263 +  -4.8  -3.22906   GAGTGAGGATTGTCT                TGGG TGTAT CCCA                CTTTTGTAGCCCTCA  50 55
JTM80_RS19085 NONE
        leuB 4685824 .. 4685854 +  -4.6  -3.53343   AAGTCGCAAGCAGGG       GAGCAAGAGAGGCT TGA AGTCTCTCTCCCGC       TTTGGGAGAGGGATT  54 73
JTM80_RS19110 4691423 .. 4691449 +  -2.2  -3.75153   AACTCGATTCGCAAA         CTGATTAGGCTC GGT GAGTCTAGCAAG         TTTGAGTTCAGCAAA  50 55
JTM80_RS19115 4692743 .. 4692757 +    -5  -3.85817   GTCAATCACATCCAG               TTGGCT AAG AGCTAA               TTTGTAAAGGAGCCT  61 512
JTM80_RS19145 NONE
JTM80_RS19150 4699167 .. 4699212 +  -3.4  -3.88577   CGAAGAACGAAAAAC GAAGAACGAAAAACGAAAAA CGAAAC TTCTTCTCTCTTCGTTCTTC TGTTTTCGTTCTTCC  54 44
JTM80_RS19155 4700341 .. 4700356 +  -4.6  -3.17075   AGGTGCTGCAAAAGG              CGCTGC AAAG GCAGCC               TTGGATTAAAGGAGC  48 40
JTM80_RS19160 4701241 .. 4701274 +  -3.9  -3.39058   GGTTGCCAGTGACAT     CGTAGAAGTAGGG GTGTATTA CTCGACTTTTACG      TATTGTCTATCGTCT  50 265
JTM80_RS19165 NONE
JTM80_RS19175 4703032 .. 4703071 +  -2.8  -3.54575   AGTCTGAGGTGGTGA  CGCTGGCGCGAGTATAG GTTCCTG CTCTGCTCGT-CCTGCG  TGTTGCTTTTTTAAC  49 9
JTM80_RS19180 4704046 .. 4704072 + -10.9  -2.73364   AAGGTTTTGCGATGA         CTTCTCGTGGG CACAA CTCGCGAGAAG         TCATTCAACTGAACC  69 83
        typA 4708298 .. 4708338 + -17.1  -4.70659   CTTCGGAAACATAGC  CAAAAGCGGGGTGAATT AGATTTC AACTCACCCCGCTTTTG  TTTTTACCTGTCGAG 100 67
JTM80_RS19225 4713712 .. 4713727 +  -5.4  -2.62043   CCACCTGCGGCCACC              TCCAGCG TCA CGC-GGA              TGGCTTCGTTCTGAA  46 505
        tsaE 4716056 .. 4716070 +  -2.1  -4.42788   CTTTTATAGAAGGTT               CCAGT TTTGT ATTGG               TTTTGTGACCTTAGC  60 76
JTM80_RS19240 4717455 .. 4717470 +  -4.8  -2.66008   CTGCATCTTTTTCAG              TTAACT GGCT AGTTAA               TGATCTGCATCGTTT  44 120
JTM80_RS19245 4718942 .. 4718961 +  -5.6  -3.87815   TCTGCAAGAGTTCTA            GCCGGCCCC AAG GCGGC-GGC            TTTATGCAGCTACAG  61 25
JTM80_RS19250 4719689 .. 4719706 +  -4.1  -4.99861   GTTTTCCAAGCTTGA             CTGCGCCC TAC GGGC-TAG             TTTTTATCGTTAATC  74 242
JTM80_RS19255 4722687 .. 4722723 +  -3.1  -3.30441   CAGGGCTGTTCCCGA   TCGG-CCCTTGC-CCAA AAATA TTGGTGTGAGGGGTCGA   TTCTACGGAATGATG  46 101
JTM80_RS19260 4723244 .. 4723257 +  -5.2  -4.93877   TCTCAACTCAGGATT               GCCC GCTGGA GGGC                TTTTCTTTGCTGCGG  79 202
JTM80_RS19275 4725980 .. 4726000 +  -6.7   -3.3854   CCCCCATTCGCGCAT            CAGCCGTCG GGG CGACAGCAG            TTGTCGATAGTAATT  56 306
JTM80_RS19285 4728295 .. 4728306 +  -5.8  -3.66646   GACAGCAGTTCTGAT                CCCT TGAT AGGG                 TTTGGGTGCGGTGTT  62 27
JTM80_RS19290 NONE
JTM80_RS19295 4729463 .. 4729476 +  -8.1  -2.73124   TGCGGCCGCGTTTAC               CCAGG GCAG CCTGG                ATTTCCAAAATCCCC  59 91
JTM80_RS19310 4734190 .. 4734212 +  -3.3  -4.07885   GAGACCCTTAAACTC           CCCCCCG TTAAAGCTC CGAGGGG           TTTTCAAAACCCCTC  56 47
JTM80_RS19315 4735266 .. 4735278 +  -7.7  -2.71712   TGACCAGGATTTCTA                TGGGA GCA TCCCA                CTTTCGCGAAAACAG  56 101
JTM80_RS19320 4736417 .. 4736429 +  -4.1   -4.0641   CTGTTTCATCGAAAG                TGGGA TGC TCCTA                TTTCTATGCCTGGCC  59 41
JTM80_RS19335 4738878 .. 4738894 +  -2.1  -2.90496   TTGCTAGCTCGGTTC              GGGCTGG CGA CCAACCA              TGATTTAACAGCAAA  41 165
JTM80_RS19340 4741332 .. 4741365 +  -5.9  -3.12999   GAGAGGAGAACTTGT     TAACGCCTCCTTCCT GAGG GGGAAGGAGGTGAGG      TTAGGTCTGAAATGA  53 62
JTM80_RS19345 4743542 .. 4743554 +  -5.5  -2.87211   GCTGTGCTTTAGCCC                GCAGG TGA TCTGC                TCTGTGCCACCCAAT  49 351
JTM80_RS19350 4744465 .. 4744477 +  -4.1  -3.34398   CCCCTTGACCTCCCA                TAGGG GCC CCTTA                TCTTTAACAAAGAAG  50 41
JTM80_RS19355 4744929 .. 4744958 +  -6.3  -3.05844   GGCGGAAGTCTCTAA       CCGCTGGTTTCGT CTGC GCGATACCGACGG        TGTTGAAATCGAACC  53 91
JTM80_RS19360 NONE
JTM80_RS19365 NONE
JTM80_RS19370 4746732 .. 4746746 +    -7  -2.60212   GGCTACGCTCTGAGC               GTGGCC CCA GGCCCC               ATTCTAGAATGCTAA  52 28
JTM80_RS19375 4747549 .. 4747576 +  -5.6  -3.06302   TTAAAGGTCTCATTT        TGCTGATC-GCGA GGA TCGCAGGTCACCA        TTACATCGGGATAGT  49 477
JTM80_RS19395 4752645 .. 4752681 +  -4.5  -5.74288   AGAGGAAAGAGAGAA    GAGAGAAAAGGGAAGAA TCT TTCTTCGGTTTTCGTTC    TTTTTTCTTGTTTCT 100 47
JTM80_RS19405 4755872 .. 4755883 +  -7.2  -3.56325   GACCACCAGCGACAC                GGGC GATC GCCC                 TTCTGGTTCTGGCAC  60 509
JTM80_RS19430 4759931 .. 4759961 + -10.5  -4.63542   AGAGATGAATTGAAG      TGGGCCAGACGAGG CATT TC-CGTCTGGCTCA       TTTTTGCAGATTCTC 100 69
        cobN 4765927 .. 4765941 +    -2  -2.56046   ATTCATATACGGTTC               TTTGGC GTT GCCATG               TGCATTACGCTTTGA  39 121
JTM80_RS19445 NONE
JTM80_RS19450 4768156 .. 4768211 + -9.59999  -5.23316   GACATTAATAAATAT AAAACCCAAAGAACCTGTGCCGCCCGC GCA GCGGGCGGCACAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 136
JTM80_RS19455 4769138 .. 4769150 +  -4.7  -3.03124   AGGCGATCAGCCCAT                GCACC AGT GGAGC                TATTACAGCATAGAC  47 502
JTM80_RS19465 4771157 .. 4771168 +  -3.6  -3.95153   TGGCGAGGGCAGTCA                GGGC GATC GCTC                 TTTCTGGGTCATTCC  57 73
JTM80_RS19480 4773822 .. 4773834 +  -9.1  -2.68823   TACTGCAATAGATTG                GGCTG GCG CAGCC                GTTCTGTGCCGCGAA  61 359
JTM80_RS19485 4775198 .. 4775229 +  -4.4  -4.04482   AAACCAAAGACGCAA      CCTCCTCCGG ATTGCCCATGCG CTGGAGGGGG       ATTTTTTTTGAGGAA  61 240
JTM80_RS19495 NONE
        ylqF 4778829 .. 4778839 +  -6.8  -3.08679   CGTAAATGTGGAACC                 CTGC AAG GCAG                 TCTTAACTGAAAGAC  56 224
JTM80_RS19505 4782160 .. 4782190 +  -7.7  -3.40371   GCGTATTGAAGTTCC      G-CTGGGGA-CGTTG GCA TAACGCTCCCCAGGC      TTCCTTGCTAAACTG  62 7
JTM80_RS19510 4783942 .. 4783989 + -20.6  -4.89838   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCGC GCA GCGGGCGACGCAGGGTCTTTGGG TTTTATATTTATTAA 100 238
JTM80_RS19540 4791329 .. 4791359 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS19555 4795513 .. 4795529 +  -5.1  -3.54543   GGTCAGCTTACCTAA              TCGGCTG ATT TAGCTGA              TTTAGCGACCTGGCT  56 62
JTM80_RS19570 4803378 .. 4803404 + -17.4  -3.30124   TACGCAGTTGGACAA         TTTCTCGCGGGC TGC GCCTGCGAGAAA         TTGTCCAAAATCCAG 100 45
JTM80_RS19575 4805315 .. 4805351 +  -2.4  -4.77629   CCCCTCTTCCAGGGC   GCGAAAAAAGG-CGGTA GGAT TACAGGCTTTTTTTCGG    TTTTCTCTTGATTTT  68 148
JTM80_RS19580 4806281 .. 4806299 +  -4.6  -3.56727   ATATGAATGGATGGT             TTCTCG ATAAACG CGAGAA             TTCTAATTGCTTGAC  54 89
JTM80_RS19585 NONE
JTM80_RS19590 4807602 .. 4807615 +  -2.4  -3.57792   GGTCAGGGAATCGTG               TTGG TTTTCC CCAA                TTTAGGGCTGGCTCC  47 124
        rlmB 4809343 .. 4809357 +  -2.1  -4.25256   CCCCTTGAATAGACT              GGC-TC ATAG GATGCC               TTATTTTGCTGAAGC  57 249
JTM80_RS19600 4809706 .. 4809740 +  -6.2   -4.4017   AATGCCTACCCGCAG     CGCGGCGGCGTTTGGC TAG GTCGAGCGAAGCCGGG     TTTTGTCAGAATTGG  71 7
JTM80_RS19605 4810607 .. 4810625 +  -3.8  -4.07568   GTGAGAAGTCATGTT             TATGGACA AGT TGGCCATG             TTTTGCGGCGGCGAC  59 132
JTM80_RS19615 4812853 .. 4812872 +  -5.6  -3.23274   TTGGCTATGATATGC            GCTGAGGC GTTT GGCTCGGC             TTGCATTCTGAGAAA  53 21
JTM80_RS19620 4813189 .. 4813201 +  -2.6  -4.25104   TGCTTTTTTGGCGAT                CGCC CGACA GGTG                TTTTCCTGAGCGACG  57 4
JTM80_RS19625 4814106 .. 4814125 +  -5.7  -3.92522   TTGAAATACAACCTG            GTTGGGT AGAGCC ACCCAGC             TTTGTAAAGTTCGCG  64 17
JTM80_RS19630 NONE
JTM80_RS19635 NONE
JTM80_RS19640 NONE
JTM80_RS19645 4818047 .. 4818061 +  -5.6  -2.75844   ATCGCAGATTTAGGA               TTCCGC AAG GCGGCA               GTTTGAGATGCAGAA  48 76
JTM80_RS19650 4820292 .. 4820304 +  -2.6  -2.96899   TTTATGTATTAATTC                CTCC TGTTT GGGG                TGTACTTAGTTGAGG  41 29
JTM80_RS19655 4821220 .. 4821234 +  -4.2  -3.41527   CAAATCAATCCAAGA               CGGCTT GGA AAGCAG               TTCTAGTACAAGTTC  52 5
JTM80_RS19660 4821775 .. 4821789 +  -5.7  -2.75536   CGGTTTCTCGGAAAT               CCTTG ATTAA CAAGG               CTTTCAGGCTCCTTT  51 145
JTM80_RS19665 4822743 .. 4822784 +  -9.4   -2.7464   AATCTTTTTCCCTCA TCCCCCAACCCCTTCTCCC AAAAA GGGAGAAGGGGA-GCCGGA GTTTAGAACTGGGTT  62 102
JTM80_RS19675 4827186 .. 4827210 +  -4.9  -3.07344   ACTCAAAACTTGCAA          GTGATTGGGGA GGC TTCCCGCTCGC          TCTCTTCAACCCTGC  48 143
JTM80_RS19695 4831786 .. 4831798 +  -4.7  -3.64703   TGAGGCAACCAGGGT                GCTGC CAT GCCGC                TTTAGGTGCCAGGCC  54 337
JTM80_RS19710 NONE
JTM80_RS19725 4843166 .. 4843179 +  -2.3  -3.43033   TGGGGTTTAAGCGTT               TGCCG CCTG CGTCA                TCTTGATTTTGGATT  46 6
JTM80_RS19730 4844627 .. 4844647 +  -8.4  -2.71731   TATCAGGGGAAGACC            TACTCGTA CTCAT TACGAGTA            TGATTAAGGAGTGGG  59 169
JTM80_RS19735 NONE
        hpsN 4847499 .. 4847510 +  -2.2  -3.83026   GATGTCAGAACTCAG                GAGC GGCC GTTC                 TTTGCTCTAGCCCCA  53 4
JTM80_RS19770 4852174 .. 4852186 +  -3.3  -3.41745   GACCGATACGGAAAG                CTGGG TGA CGCAG                TTGGTGTTATGAACA  47 1
JTM80_RS19775 4853955 .. 4853967 +  -3.3  -3.29511   GGGGAGTCAGCACGA                TCGGC TCT GCTGG                TTCTGCACCACTGGC  45 383
        trxB 4856307 .. 4856324 +  -3.3  -4.09685   TGGGCAGTGGGGTCA             TGGTCGC GTTC GCGGCGA              TTTTCGCCCGTGGCG  58 419
JTM80_RS19810 4865202 .. 4865239 +  -2.5  -4.07885   GGATCGAAGCCCATA   GCTCCTAAGTTGGAGCC GGAG GGCTTGGTCAGAGGAGC    TTTTGGGCCAGCGTC  55 186
JTM80_RS19815 4865870 .. 4865883 +  -3.8  -3.02371   TGAGCTAGCCCTGAA               GTGC CGGGTT GCAC                TGATTCTTTGCGGCA  45 33
JTM80_RS19820 NONE
JTM80_RS19825 4868505 .. 4868517 +  -3.3  -2.78263   TAATAGCGTCAAGTT                GCGCT GCG ATCGC                TCGATTTTGCCTTCT  41 73
JTM80_RS19850 4871248 .. 4871261 +  -5.2  -3.66424   ACGGCCTCCAACTCC               GGCG CAATGC CGCC                TTTGAACTGGTTTTC  58 172
JTM80_RS19860 4873622 .. 4873675 +  -7.7  -4.59773   TATACCGACCATTTA GGCTTTGCCTGAACCCTCCATGC CTTCATCGCT GCATTG-GG-TTCAGGCAAAGTC TTTTTCCGGGTGAAC  82 298
JTM80_RS19930 4888827 .. 4888837 +  -2.4  -4.07568   CCAGTTGGCAATCGT                 GGCG CGG CGCG                 TTTTGCGGGGCACGA  56 142
JTM80_RS19940 NONE
JTM80_RS19945 4891948 .. 4891970 +  -9.8  -3.14211   GTCCGCCCCATTCTG           CCTGAAGCTG ATT CAGCATCGGG           TTCATGAGCCGACAT  64 459
JTM80_RS19960 NONE
JTM80_RS19965 4895645 .. 4895661 +  -5.1  -2.87931   CAAAGCATCGCCGCT              CAAGCCT AGA AGACTTG              TGTATACCCAGTAGA  49 313
JTM80_RS19970 4896968 .. 4896978 +  -2.4  -4.71186   ACTGAGCACCAGTCG                 CAGC GGA GCAG                 TTTTGTCTTGCTGCT  66 274
JTM80_RS19990 4906247 .. 4906259 +  -6.3  -3.30771   TCAGGCGCTATCTTA                GACTT TGC AAGTC                TTCTGACGAATCTGG  55 100
JTM80_RS19995 4907281 .. 4907294 +  -6.7  -4.06778   CCAAACCTGTCATGA               TCAGC CTAT GCTGA                TTTACATTTTTTCAT  69 185
JTM80_RS20000 NONE
JTM80_RS20005 4910505 .. 4910516 +  -2.2  -3.87104   CAGCGGGCAACCGTC                TTGG GGAA CCAG                 TTCTTGTACTATGCC  53 303
JTM80_RS20055 4921398 .. 4921409 +  -3.6  -3.65902   CCGGCTGCAAGGCTT                CGGG GCCA CCTG                 TTTCCATAGGGTCAA  54 250
JTM80_RS20065 NONE
JTM80_RS20070 4924949 .. 4924959 +  -5.4  -3.22475   TCTCAATGGTCAATT                 CTCA TCC TGAG                 TCTTGTAAGACTGGG  53 16
JTM80_RS20075 4925750 .. 4925763 +  -3.1  -3.62411   CACAGGCGATCGCCC               GG-TGG AGT CCAGCC               TGTTTCATCTTTTGG  49 450
JTM80_RS20110 NONE
JTM80_RS20115 4934942 .. 4934955 +  -3.1  -3.48276   CCCTTGCCCTTCTTT               TTTGC CATT GCAAG                TTGTCTCCAGAAGCA  49 368
JTM80_RS20125 4935968 .. 4935981 +  -2.4  -2.75481   AATCGGGTGGACATC               GCAA TGGCAC TTGC                TGCTTCAACTTCCAA  39 45
JTM80_RS20130 NONE
JTM80_RS20135 4937771 .. 4937781 +  -3.2  -3.14414   CTGTGACGGACTGCG                 CTTG GTT CAGG                 TCTTGCGTCTGGTTT  44 91
JTM80_RS20140 4938856 .. 4938875 +  -5.6  -5.78622   TTGGATATAAAACCA            GAGGGGAC GATC GCTCCCTC             TTTTTTTTGGAATCA 100 60
JTM80_RS20145 NONE
JTM80_RS20150 4940191 .. 4940225 + -10.8  -2.53213   ATGATTTAGCACAGA    G-GGCGGCGGGCGATC GCGCA GATCG-TCGCCGCCAC    TGGATTGCAGAGTTC  67 47
JTM80_RS20160 NONE
JTM80_RS20165 4943302 .. 4943357 + -17.6  -5.23316   GACATTAATAAACAT AAAATTCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGATCTG TTTTTTAATCTGGTC 100 48
JTM80_RS20170 4944140 .. 4944160 + -11.1  -4.77567   AGTTAGCTGGTTGCA            GGCACTCCC ATC GGGGGTGTC            TTTTCTTATGCCGAT 100 105
JTM80_RS20175 4945110 .. 4945130 +  -4.8  -4.57073   GAGGAGACGTTTTAA           GTTC-TAGC GAGC GCTACGAAC            TTTTTCCCAGGCATA  68 95
JTM80_RS20205 4954507 .. 4954536 +  -3.6  -2.63631   CCTTGGCCCCCAGCA      CGCTGTCTTC-CGA CTCG TCGCGCAG-CAGCG       TAATCTGGCGGTTGG  42 308
JTM80_RS20215 4957966 .. 4957976 +  -2.4  -3.66646   GCGCAGTTGCGCGAT                 CTCC TCA GGTG                 TTTCCCTAGAATCTT  50 438
JTM80_RS20220 4958441 .. 4958466 +  -3.1  -5.07652   GCTGACATCCGTCCT         GCTGGCTGAGC GATC GCTCGGTCTAC          TTTTGTTTTCAGAGC  76 86
JTM80_RS20235 NONE
JTM80_RS20240 4968339 .. 4968362 +  -3.7  -4.34488   TCCGCCCACCTCAAT          CCGCAGCAG CGCATC CGGCTGGGG           TTTGTTGTCCATGTC  65 508
JTM80_RS20255 4970752 .. 4970763 +  -2.2  -4.56775   CTGCACTAGGGCTTG                GGTT CTTC GACC                 TTTTTGAAGGGCGAT  62 254
JTM80_RS20265 4972845 .. 4972855 +  -5.4  -4.10453   CTTGCACCATGCACT                 TGCA CCA TGCA                 TTTTAAGGCAGTTTG  63 483
        pdxA 4974047 .. 4974067 +    -2  -2.58714   CAACGGCTGATCCTT           C-AAAATCA GTCT TGATTTTAG            TAAGTTCGTATCACC  39 11
JTM80_RS20280 4974603 .. 4974638 +    -6   -5.8187   ATCCAAAAAAGTCAA    CCGGGGATCTCTACGCA TAA TG-GCGGAGTGCCCCGG    TTTTTTTGTTCAGTA 100 101
JTM80_RS20290 NONE
JTM80_RS20295 4978386 .. 4978407 +  -2.9  -3.54902   ACCCAGTTTTAAGTC           TTTGGGGGT TGAA ACCGCCGAG            TTAATTCTTAGCTCG  49 40
JTM80_RS20300 4979962 .. 4979989 +  -5.7  -5.47218   TGATCACCTCCTCTA        GCTTGATAAAT ATGCTG ATTTGTCAGGC         TTTTTTTGCGTGAAA  95 132
JTM80_RS20305 4981206 .. 4981224 +  -3.2  -2.75975   ACAAGAGTCAGCACA             GGATTA GACCGGG TAATCC             AATTTTTTAGAGCCT  41 110
JTM80_RS20310 4982116 .. 4982142 + -15.2  -2.64933   CTGGGTTTTGGACAA         TTTCTCGCGAGC GCA GCCCGCGAGAAA         TCGTCTAGCTGCATA  83 117
JTM80_RS20315 4984780 .. 4984806 + -10.1   -3.0894   CAGCACCTTGGGAAA         CCCGGTCGTTC TCAAC GGGCGATCGGG         TTCCCTGCCTGCTTG  68 44
JTM80_RS20320 4985747 .. 4985761 +  -2.9  -3.53012   GGTATCTCACACGGA               TATCT CACAC AGATA               TTTAGAGAGACAGGA  49 194
JTM80_RS20370 4994239 .. 4994249 +  -8.2  -2.55213   CCAGCTAGCCAATCG                 GCCG CAT CGGC                 TGGGTTGGGTAAATC  58 78
JTM80_RS20380 4995574 .. 4995585 +  -2.2  -4.11216   CCCGGTTTGCTCTGT                CTTC AGGA GGAG                 TTTTGGGGCTGGGGC  55 347
JTM80_RS20385 NONE
JTM80_RS20390 4998858 .. 4998883 +  -3.9  -3.07994   CCAAGAGCTACCAAC         GAAATTGCGAG AAGC CCCGCAGGTTC          TTGACTGCCATTCAA  46 158
JTM80_RS20395 4999425 .. 4999435 +  -3.2    -4.258   CACCTTGGCGGCGCT                 CTCT TCT AGGG                 TTTCTTGATCGGTGC  64 136
JTM80_RS20410 NONE
JTM80_RS20415 5002828 .. 5002846 +  -3.9  -4.54477   CCAAAATAAGCAGAC            CTTA-CGC ACTT GCGATAAG             TTTTCTGGATTTTGA  66 57
JTM80_RS20420 5003383 .. 5003405 +  -5.6  -2.68823   TTCGCTCCAACTATA          GCCCT-ACG CAGTCA CGTTAGGGC           ATTCTCTAAAAGCAG  47 6
JTM80_RS20455 5010240 .. 5010258 +    -3  -2.76162   TGCGGGTTCAGATCG             GGCAGCTT CCG GGGCTGCG             GTTTCCAATAGGCTC  41 297
JTM80_RS20485 NONE
JTM80_RS20490 NONE
JTM80_RS20495 5017997 .. 5018007 +  -5.4  -3.35679   CGGATTGGACTGCTA                 CTTC ACA GAAG                 TTCTGCGTCGAGGAG  54 73
JTM80_RS20500 5019653 .. 5019673 +  -3.3  -3.04836   TCCGATGCGTAAGTG            TTTGCCGAA TAA TTTGCCAAA            TAATTTGTGGTCATG  44 29
JTM80_RS20505 5022249 .. 5022259 +  -6.8  -3.34344   GAATCGGAGGGCGAT                 TCCC GTC GGGA                 TTGCTTCGCGAATCG  60 41
JTM80_RS20510 5023274 .. 5023289 +    -4  -4.54477   GCAATCCAAACAGGA              CTTACG CACT TGTAAG               TTTTCTGGGTTTTGG  66 119
JTM80_RS20515 5025911 .. 5025921 +  -5.4   -3.4247   ATAGCCCCAGAAGTG                 GCTA TCG TAGC                 TGTTGTTGCGGTTGT  53 194
JTM80_RS20525 5028356 .. 5028410 +  -2.3  -3.73872   GGAAAAAACGAAGAA CGAAAAACGAAAAACGAAAAACAGAA CCTC TTC-GTTCTTCCCTCTTCGTTCTTCG TTCTTCCCTCTTCGT  50 45
JTM80_RS20530 5029761 .. 5029783 +  -5.5  -2.66787   CACGCTGCAAAAACT          GCGGCTG-AC CGAC GTGCCGCCGC           TGGTCTGGATGTTGC  46 148
JTM80_RS20540 5032933 .. 5032985 + -11.5  -5.27769   ACGAAGAACGAAGAG GGAAGAACGAAGAGGGAAGAATGGG GTT TTCGTTCTTCGTTTTTCGTTCTTCA TTTTTCATTTTTTCT 100 69
JTM80_RS20565 NONE
JTM80_RS20570 5045830 .. 5045848 +  -5.3  -4.54477   TAAATGTCTCCAGGA            CTCA-CGC ACTT GCGATGAG             TTTTCTGAGTTTTGG  71 181
JTM80_RS20575 5047231 .. 5047264 + -13.1  -3.36341   GTGACCGGGATGATG     GCCCGCGCTAGCGTGC TAA GCGTGAT-GCGCGGGC     TGTTTGCCCAGTATT  79 276
JTM80_RS20605 5055370 .. 5055420 +  -4.6  -2.76909   CATTCAGGTGGCAAG CGGGCGAGGGTGA-GTCTTGGAG TCGGTT CTCGAAGGCATCTCACCCGTCCG TCCTGTGGTTTTCTG  45 13
JTM80_RS20610 5056074 .. 5056092 +  -3.8  -3.75169   GACTGATGGGCGCGG             GCGCTT TGATCAC AGGCGC             TTTGATCAGCTGATG  54 120
JTM80_RS20625 NONE
JTM80_RS20630 NONE
JTM80_RS20635 5060469 .. 5060498 +  -2.7  -3.47841   CGTTAGGGGTCTATG       GTAGGGTAGTGGA CTGT TTCACCCCCCTCC        TTCTGCTGTAGATAT  47 22
        thiO 5062752 .. 5062778 +  -3.7   -4.2828   TGTCAATCGCGCCAG        CCGTCACGTC GCCTTCCA GACG-GGCGG         TTTTGCTGACTGACA  65 217
JTM80_RS20660 5066835 .. 5066859 +  -4.1  -3.39803   CGTGGATCTGTTCTA          GGCTGAGGCGG CCG TTGCCGGAGCC          TTCTACGTCTCGCTG  49 183
JTM80_RS20685 NONE
JTM80_RS20705 5077989 .. 5078046 +  -4.2  -4.55287   ATCGCTGGGCTAAAA CTCGGAGTTCTAAAGCCA-AAATAAGGC TCTT GCCTGAAGGATGGCTC-AGAACTCCGAG TTTTGTGTGACTGGG  68 141
JTM80_RS20715 5080212 .. 5080225 +  -3.8  -4.05446   TAAACCCTCGTATAA               GCAG AATAGA CTGC                TTTCTCGTTGACCCG  59 90
JTM80_RS20725 NONE
JTM80_RS20730 NONE
JTM80_RS20735 NONE
JTM80_RS20740 NONE
JTM80_RS20745 NONE
JTM80_RS20750 NONE
JTM80_RS20755 5091754 .. 5091783 +  -3.5  -2.79239   TGCAGTCATGGTCAT       GGGAGGC-GAATCA ACA TGAACCAGCCTCTC       TGCATTTTGCTGTCG  44 7
JTM80_RS20760 NONE
JTM80_RS20765 5094181 .. 5094191 +    -4  -2.67166   TTAACAGTATCAAAT                 CTAA ACA TTAG                 CTTGATTACTTGAGT  43 15
JTM80_RS20770 NONE
JTM80_RS20775 5096918 .. 5096929 +  -2.2  -3.14587   TGCACGATCGCTTCT                GAGG AACA TCTC                 TCTGGTTTTGTGCCG  42 79
JTM80_RS20780 NONE
JTM80_RS20785 5099899 .. 5099929 +    -4  -4.07877   TTGTATCCAATTCCT       TAAGTTCAACTGTT ATG AACGGTTGAGCAGA       TTCTTTATGGCATCC  59 53
JTM80_RS20790 NONE
JTM80_RS20795 NONE
JTM80_RS20800 5102217 .. 5102228 +    -3  -3.75153   CAACCATTACCTAAT                TTAG GTAC CTAA                 TTTAGGTTGCAGAGA  52 65
JTM80_RS20805 5103295 .. 5103307 +  -6.3  -4.41353   ATTGCGGAGGTGCGC                CTATG ACC CATAG                TTTTGGTCTATCTCG  71 20
JTM80_RS20810 5103660 .. 5103672 +  -3.5  -3.20345   ACCCTAAAGCATTAC                TAAAT ATG ATTTA                TCTTCCTGTCACGTT  48 89
JTM80_RS20815 5104390 .. 5104400 +  -5.4  -3.43338   ATTGATAGATAGTGA                 TCCT CCC AGGA                 TTGATTCCTCTAAAT  54 85
JTM80_RS20820 5105227 .. 5105238 +  -5.8  -3.15257   GGTGAATAGTACGCA                GCCT GATT AGGC                 TCTATATATTTGCGC  53 32
JTM80_RS20840 5113012 .. 5113034 +  -2.6  -4.07568   AAGTCGGCGATACGG           TTCGCAGCTC GCG GGTCTGCAAA           TTTTCCACAAACAGG  56 500
JTM80_RS20850 5113946 .. 5113956 +    -4  -3.20382   CTTAGGTATAGCAAC                 TCTT AGC AAGA                 TTGATGAATGTCGCG  48 472
JTM80_RS20855 5115123 .. 5115135 +  -2.6  -3.40102   GCAATCTGGCTTCCC                GTCC CAACA GGGC                ATTTTCATTTTCAGT  46 100
JTM80_RS20860 5117956 .. 5117967 +  -7.2  -2.56596   ATCGCCCCCCAAAAT                CGGC AGCC GCCG                 TCGATTAATCGCCAC  50 494
JTM80_RS20870 5120774 .. 5120788 +  -3.4  -3.85698   GATGTGAGTCACCTG               GCCCGC GCC GTAGGC               TTTGTGAACGACGCG  55 180
JTM80_RS20895 5126925 .. 5126935 +  -6.8  -3.83026   CGACAAGACTCGACT                 TGGC GCT GCCA                 TTTGCTATCGAACGC  67 286
JTM80_RS20900 NONE
JTM80_RS20920 5133052 .. 5133074 +  -9.9  -3.85698   ATTTAAAAAGAAAAA          CGGGGC-AAG CCCC CTTAGCCCCG           TTTCTCAAACAAGAG  78 80
JTM80_RS20975 5146147 .. 5146158 +  -2.2  -3.45634   CGGCCCGAGATAAGC                GGTT TACG AGCC                 TTGGTTAATTCGCCT  46 55
        murQ 5147409 .. 5147421 +  -4.8   -3.5361   ATTGCTTAGTAAAAT                CGCT AGTTG AGCG                TTCTATCCCTCATTC  54 206
JTM80_RS20985 NONE
JTM80_RS20990 5149950 .. 5149979 +  -3.5  -4.13014   CCGTCTCGGCATCGT       TGACGCGGCGAAGT TGC ACCACGTCGC-TCA       TTTTGCGGATCTGGG  61 171
        patD NONE
JTM80_RS21005 NONE
JTM80_RS21010 5155227 .. 5155241 +  -4.2  -2.93991   TTCGGACACGCTGCC               TATGCC GTC GGCTTA               TGTCATTGGGTTGGG  47 133
JTM80_RS21015 5156741 .. 5156774 +  -5.2   -2.7535   TGAACGCTAAAAGCA    CGGTGGCTGGCTTGGC GATC GCCCC-CCAGCC-CCG     TCGTCTATTCAAGAG  48 102
JTM80_RS21020 5157532 .. 5157556 +  -3.6  -3.39327   AGGGAACCGATTCAG         TGGATTCAGTG GACG CGCTGAA-CCG          TTATCCCTCTGCAAC  50 117
JTM80_RS21030 5160550 .. 5160570 +  -9.7  -4.28548   TTTTTAGATTTTGGA            TCGGCGATT TTG GATCGCCGG            TTTTGGTGGGTCAAT  87 134
JTM80_RS21050 NONE
JTM80_RS21055 5166343 .. 5166355 +  -3.3  -3.54459   GGTGTGGTAGCGGCT                CCGGT GGC ACGGG                TTTGAGGAAGCTTAC  49 8
JTM80_RS21070 5168942 .. 5168969 + -10.6  -4.73388   AATGCTAAATCAAAA        CGGAGGTGAGTG GTGA TACTTGCCTCCG         TTTTTGATGCCCCTT 100 86
JTM80_RS21090 5172124 .. 5172140 +  -5.7  -2.80784   ACAGTCTTGGGGCGG              CTGCGGG CGG CCAGCGG              TGCTTGCTCGATTTC  47 116
JTM80_RS21100 5176640 .. 5176666 +    -8  -2.64933   CTGAGTTTTGGAGGA         TTTCTAGCGGGC TGC GCTCGTGAGAAA         TCGTCTAACTGCGTA  58 119
JTM80_RS21105 5177718 .. 5177746 + -10.9  -2.71744   ATTGGGCAAGTCGAG        CCGCCCGTGAAAC TGA GTATCGGGGGCGG        TGGTCTGTCCTGGTG  66 378
JTM80_RS21125 5179797 .. 5179842 +  -3.9    -4.946   TAACCCCCTTCCATT CCGGTTC-AGGCTCAGCACGGT TTT AGCAATCTGAGCCTCGAACCTG TTTTTGCTATTTGCT  74 69
JTM80_RS21130 5182221 .. 5182236 +    -6   -3.1355   CGGGGTGGGTAGGCT              GGCTGC TGGT GCCGCC               TTCGGTCTGGATCAG  52 435
JTM80_RS21145 NONE
JTM80_RS21160 NONE
JTM80_RS21165 5187259 .. 5187269 +  -6.8  -2.78384   GCTCAGGCGGGCGAA                 GAGC ATT GCTC                 TATAGTCACCAAAAG  53 10
JTM80_RS21185 NONE
JTM80_RS21190 5192400 .. 5192411 +  -7.2  -3.35813   CATCGACAGGCTAAT                GCGC TTCA GCGC                 TTCGTTCACCTCCAG  58 292
        glmU 5196380 .. 5196407 +    -2  -3.69216   AAGCCCTAGTGGCAG        GTGGA-AACCCTG GCA TGGGTTTGTCCAC        TGTTTTCACTAGAAC  50 132
JTM80_RS21210 5198259 .. 5198285 +   -21  -2.71364   TAAGCAGTTGGACGA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TCGTTCAGAACCTGG 100 47
        grxC 5203519 .. 5203530 +  -2.2  -3.45788   CTCTTGCGCTCTGCC                GCTGC CTC GC-GC                TGTTCTGTTCTGCCC  46 99
        gshB 5204842 .. 5204860 + -13.2  -3.54424   GAGCCGCACCGGAAG             TCCCCCTT GTT AAGGGGGA             TTTAGGGGGATCGAC  86 283
JTM80_RS21245 NONE
JTM80_RS21250 5207116 .. 5207129 +  -2.3  -3.53444   AGCGCCAACCCGATT               TCGCG CCAA CTCGA                TTTCGCGCCAACTCG  47 39
JTM80_RS21255 5208204 .. 5208230 +  -3.6  -4.57073   CTGGTTTACCTCGCG         TTCGGTGTAGGT TTT GCCCGCAGCGAA         TTTTTCAGCCAGGTA  70 163
JTM80_RS21265 5209985 .. 5210026 +  -8.9  -3.19102   CATACTTCTGATTTA GGACTTACGCAGTTG GACGATTTCTGG CAAGTGCGTAAGTCC  TGTGATTTTTCAATA  67 129
JTM80_RS21270 5211519 .. 5211541 +  -6.8  -3.93963   GATAATGGTGACGAA           CGGCGTGCCG ATG CGGAGCGCGG           TTTCTAGCTCCTGAT  66 342
JTM80_RS21285 5215772 .. 5215786 +  -2.8  -2.94679   AAATGGAAGAAACAG               GCGT AATTCCC ACGC               TAGTTTAGGCTTCCT  42 3
        folD 5217133 .. 5217151 +  -9.6  -3.87994   GCTAGATCCGTTCAG             TTGGCCGA AGA TTGGCCAA             TTTATCACCCTGACT  78 225
JTM80_RS21295 NONE
JTM80_RS21300 5218556 .. 5218570 +  -4.3  -3.70676   CGGCAAAAGCCTATT               GAATC CTGCT GATTC               TTGATTTTGGATCTG  56 24
JTM80_RS21310 NONE
JTM80_RS21315 NONE
JTM80_RS21320 NONE
JTM80_RS21325 5222384 .. 5222396 +  -3.3  -4.07885   ATACTTTACCGGATC                GCCCT GGG AGCGC                TTTTGGAACGGAATG  56 41
JTM80_RS21330 5222907 .. 5222945 +  -2.4  -2.70932   ATCCAACCTGCTGTA G-CGAGTGAGAGGCG-CTC TGCG GAGTCGCCACCC-CTCGGC  TCGTTACAACACACC  39 79
JTM80_RS21335 5224490 .. 5224510 +  -4.6  -4.07687   TGGCTGAAGACAGTT           GGGC-GGGC GATC GCCCAGACC            TTTTCCCACAGCCAT  61 412
JTM80_RS21340 5226793 .. 5226805 +  -9.1  -3.33261   TGGATGCCTGGTCAA                GCCTC TGC GAGGC                TTATGGCCCTTGCAC  67 84
JTM80_RS21350 NONE
        ftnA 5229979 .. 5230025 + -26.1  -4.88684   ATTAAAAAAACAGAT CCC-GA-ACCCTGTGCCGCCCGC TGC GCGGGCGGCACAGGGTATTTGGG TTTTATATTTGTATT 100 249
JTM80_RS21370 5233215 .. 5233270 +  -5.7  -2.96369   TGAGTTTTGGAGTGG GGATTTTGGATTTTGGA-GTGAG-GGG ATGC CCTGCTAAAATCCAAAACCCAAAATCC TCCTTATCTGTTCTT  52 339
JTM80_RS21400 5241394 .. 5241416 +  -8.4  -3.06418   GCACCTCTCAGAAAT           TGCTGGCTTG TTA CAAGTCAGCC           TGCTTTGTATAAGAC  62 87
JTM80_RS21405 5241881 .. 5241893 +  -3.3  -3.59627   CGATAGAACTCGTAG                GCTGC GTA GTGGC                TTTGCAGGATTTCCT  49 226
        moaA 5249583 .. 5249593 +  -2.4  -4.57569   ACATGCGCGTCACGT                 CTCG AAT CGCG                 TTTTTGCGAACATCG  66 260
JTM80_RS21455 5253628 .. 5253638 +  -2.4   -4.1413   GGTTGCCTCTGGGCA                 GGCG TTT CGCA                 TTTTGCCCGTCTCTT  57 41
JTM80_RS21460 5254698 .. 5254716 +  -3.8  -3.66666   TAGTAAGGGGGACTT            CCGGAGC ATCTCA GC-CCGG             TTTCCCCGTTTTCAG  54 124
        purD 5258767 .. 5258785 + -13.2  -2.73635   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  79 434
JTM80_RS21480 5260369 .. 5260383 +  -2.1  -4.90296   CATTCTCAATAATCC              GC-CTC TTGA GAGTGC               TTTTTGTAAAGTTTT  68 151
JTM80_RS21485 5261499 .. 5261513 +  -4.2  -3.42013   ACTTTTAGAAAGAAA               TCGTTG TAA CATCGA               TTGGTATTATCGAAT  52 17
JTM80_RS21510 5267026 .. 5267043 +  -2.7   -3.4252   CAGGCGTGTCCGCTC             TTGTCAG CAGC TTGGCAA              TTCTGGTGAATCGCC  47 58
        codA NONE
JTM80_RS21520 NONE
        rpsP NONE
JTM80_RS21530 5270859 .. 5270892 +  -9.7   -4.4267   GACAATGTCCGACGC     TGCGCCTTCAAATTT CTTC AAATTTTGAGGCGCG      TTTTGAGTTTTGAGC  87 67
JTM80_RS21535 5272286 .. 5272297 +  -7.2  -3.17075   GTTTTGGGGACGAGA                GGGC GATC GCCC                 TTCGGTTCGAGCGAG  54 398
JTM80_RS21545 5274018 .. 5274067 + -18.1  -4.57073   AATTACCAGGGCAGT TTCGGGTTTCCGAGAGGGGTTAG GTCG CTAATCTGTCTGGGAAACCCGAA TTTTTAGCAGGACTC 100 85
JTM80_RS21550 5275449 .. 5275465 +  -5.2  -3.01924   CTGCGGCCTCTAGCG              TTTCCA CCCAC TGGAAA              TATTCGCGGCGGGTG  49 339
JTM80_RS21560 NONE
JTM80_RS21565 5278763 .. 5278787 + -10.8  -5.63857   TGCACCCTGATGGTT         GGGAGGG-CTA CCCG TAGTCCCTCCC          TTTTTTTGCGTTTTT 100 226
JTM80_RS21570 5279666 .. 5279684 + -13.2  -2.73635   CAAGATCCCCCTAAA             TCCCCCTT CAA AAGGGGGA             CTTTAAGGCGGTTTC  79 192
JTM80_RS21585 5282892 .. 5282908 +  -5.1  -3.60792   GCGTGGGCTGAGGGC              GCAGG ACAAGAG CCTGC              TTTGCCGATTGGACA  56 41
JTM80_RS21590 5284605 .. 5284617 +  -6.9  -3.29829   GAGTCTTGTAGCGGC                GGGTG CAT CGCCC                TTGTGAAAAAGTATG  58 30
JTM80_RS21595 5286341 .. 5286354 +  -2.4  -3.21912   GTGATCCAATAAAGT               GATC CAAGAA GATC                TTAATGAGTTGGAGC  44 135
JTM80_RS21600 NONE
JTM80_RS21605 5287887 .. 5287897 +  -2.4  -4.35524   CCTTATCCACTGCGT                 CGCG AAT CGCA                 TTTTCAATTTCCAGC  62 376
        nadA 5290897 .. 5290944 +    -9  -3.61894   GCCCAAGTGGCGGGT GAGGCGTTCGATCAGCCCTTCGC TTT GCGACAGGTCGG-CGATCGCCTC TTCTTCCACACGCTT  66 107
JTM80_RS21630 5295130 .. 5295145 +  -2.4  -3.04263   TCTCGTACTTCTCGC              CTGGGC CATA GCCCGA               TATTCCGCGTGACGT  41 329
JTM80_RS21665 5300240 .. 5300251 +  -7.2  -3.83409   ATGTCACAGCGCCAC                GGGG ATAC CCCC                 TTTGCTCCTCTATGG  69 100
JTM80_RS21680 5303888 .. 5303905 +  -4.8  -3.03124   AGGGGCGATCGCCCC             GCC-GCG AAGGC CGCTGGC             TATTGGGGCATCCGA  48 61
JTM80_RS21685 5304402 .. 5304428 +  -5.1  -3.73995   CCCAAACTCGACAAA        CCCCGCTAGGCT GTAG AGG-TGGCGGGG         CTTTTTTGTAAACGC  59 134
JTM80_RS21690 5306152 .. 5306165 +  -2.4  -3.04398   GGCCTCTAGCTCTAG               CATG GCTTTG CATG                GTTTTAGAGGGCGAG  42 64
JTM80_RS21695 5306849 .. 5306860 +  -2.2  -4.42062   ATTGATTTCTTAAAC                GGAC ATTC GTTC                 TTTATTTCAAGAATG  60 75
JTM80_RS21700 5308094 .. 5308118 +  -7.8  -5.04987   TTCTGAATTCTTCAA          TAGCGTAGGC TTCTT GCCCGCGCTA          TTTTTTCACGCTATT  87 74
JTM80_RS21735 5314800 .. 5314824 +  -4.2  -4.07568   CTTGCAGGCTCCTGA          TCCAGCCTCC AGCCG GGAGGGTGCA          TTTTGAGCAGAAAAA  61 215
JTM80_RS21740 5315743 .. 5315771 +  -8.1  -4.60255   CATGTCCGGCGCAGG        GGTATGAGTGCTG CAT CAGCACTCTTGCG        TTTTTGGGACGTTGT  86 67
        menB 5318239 .. 5318255 +  -3.7  -2.64651   CTTGGGTTGTGGAGT              CTTATCT GCC AGGTAGG              TCGCTTTACGAAGTT  43 369
JTM80_RS21755 5319422 .. 5319439 +  -6.3  -3.53224   GGATAACGTCCGTCC             GAGCTGCC GCA GG-AGCTC             TTTGCCCCAGCGCTC  58 344
JTM80_RS21765 5321995 .. 5322006 +    -3  -2.58272   CTGCTGAGCAATCAT                TAGA AGAA TCTA                 TACATTCCTGCTCTG  40 97
JTM80_RS21770 5322635 .. 5322649 +  -5.7  -3.53531   CGCCTCAAAGCTGAC               TCAGG AACAG CCTGA               TTCTCCTGTTCCTCA  59 44
JTM80_RS21775 5326452 .. 5326467 +    -6  -5.10163   TCCCTTTAACGGTAT              GCGGGC GATC GCCCGA               TTTTCTTTTGGGCTT  86 226
JTM80_RS21780 5326988 .. 5327002 +  -7.1  -4.07885   CTAATGATGGGTTAA               GCCTC TTCCT GAGGC               TTTTCGGCAGAACTG  69 211
JTM80_RS21800 5328989 .. 5329007 +  -9.6  -3.54424   GAACCACTCCGGAAG             TCCCCTTT ATT AAGGGGGA             TTTAGGGGGATCAAC  74 101
JTM80_RS21805 NONE
JTM80_RS21810 NONE
JTM80_RS21815 5330627 .. 5330639 +  -2.6  -3.33315   GTAGTGTCGTCCTTC                CTGG CGAAT CCGG                TTATCCAAATATTGC  46 117
JTM80_RS21830 5334194 .. 5334213 + -12.2  -3.54459   ACCCCCTAATCAAAG            TCCCCCTT AGCC AAGGGGGA             TTTAAGGGGGATTGG  82 51
JTM80_RS21840 NONE
JTM80_RS21850 5339527 .. 5339539 +  -5.5  -3.86346   TTCACATAGACGCGA                TCGCA CCT TGCGG                TTTCTACCCCACTGG  61 116
JTM80_RS21860 5340530 .. 5340563 +  -6.1  -3.49886   ATCTAGCTGCACTTG     GAGCGATCG-CACT TTCACTC ACTGGCGATCGCTC     TTCCTTATCTCAACT  59 110
        murG NONE
JTM80_RS21880 5345052 .. 5345069 +  -4.1  -3.33261   CAGTCATCCCCCGCC             TGATGTC CATA GGCATCG              TTGTAGCGCTTGAAA  49 499
JTM80_RS21895 NONE
JTM80_RS21905 NONE
JTM80_RS21910 5355666 .. 5355684 +  -5.3   -3.1241   AGGTCGATGTCTTGC            TCTTGGGC GATC GCCCA-GA             TATGTTCCGTCTCCT  49 408
JTM80_RS21955 NONE
        clpS 5369248 .. 5369264 +  -6.5  -3.55548   AACCGCCTTAAAGTG              CCCCTTT TTA AGGGGGG              TTTAGGGGGATGTTG  62 228
JTM80_RS21965 5370205 .. 5370232 +  -8.4   -4.2349   AATCTCATGCAGCAA        CCCGTTTGGAGT TCAT ACTCTGGGCGGG         TTTTGCCTGTGGGGG  76 128
JTM80_RS21970 5371502 .. 5371545 +   -14  -4.01078   AGCAGGTTAGGGTTC AGTTCAGGCTTTGGGTGC AATATGAC GTGCCCAAAGCCTGAACC TTTCTCCTGAATTTT 100 31
JTM80_RS21980 5373355 .. 5373368 +  -5.2  -2.65264   CAGCCGAATCAGCGT               GCCC CACAGC GGGC                TGATGTCGGTGGTCG  47 257
JTM80_RS21995 5377984 .. 5377997 +  -4.5  -4.13561   TGCGCTTCTCCGGCT               TCGGC TTCG GCTGA                TATTTTTTGCAAAAC  64 355
JTM80_RS22015 5380194 .. 5380205 +  -7.2  -3.17685   CGCCAGCCCATTGTG                CCGC AGCA GCGG                 TTCCGTATCTGGTTC  59 158
JTM80_RS22030 NONE
JTM80_RS22035 5384862 .. 5384875 +  -3.1  -3.64703   CTTTAAGCAGGCGGG               TTGTC TAGA GACAG                TTTGAGTCGAACCCG  49 7
JTM80_RS22040 NONE
JTM80_RS22045 NONE
JTM80_RS22050 5388233 .. 5388253 +  -6.1  -3.29837   TTTGGAGCGTTTTTT            CAGTTAGTG CGC CGCTGGCTG            TGTTGCTCTTTGGGA  55 371
JTM80_RS22055 NONE
JTM80_RS22060 5391675 .. 5391693 +  -2.5  -3.06228   CCATCCTAGCGAAGG            CA-CTCAA CAAC TTGAGCTG             ATTGTTTGTCATGAC  42 86
JTM80_RS22065 5393469 .. 5393521 +    -5  -5.44119   TCAAAAGCCCAGAAG GCTGGCTTTTCCAGTTCAA-ACGCGG GTT CAG-GTATTGAGTTTGGAAGGCCAGC TTTTTTTCAAATGAG  91 99
JTM80_RS22070 NONE
JTM80_RS22075 5396607 .. 5396617 +  -3.2  -3.65714   AGGCGAGGCGGGCTT                 CTTG CAG CAGG                 TTTCCAGTATCGTTT  52 402
JTM80_RS22085 5398832 .. 5398849 +  -8.3  -3.49568   TCTCGGAGCTTTGTG             GCGAGGC GATC GCCCCGC              TCTTGTTCTGCATCA  62 149
         acs 5401922 .. 5401969 + -26.4  -4.97824   AGATTAAAAAACAGA TCCTGA-ACCCTGCGCCGCCCGC GCC GCGGGCGGCGCAGGGTCTTTGGG TTTTATTTGGGTTTT 100 228
JTM80_RS22100 5403148 .. 5403162 +  -8.5  -3.80625   TTGCAACTCCAAACC               CGCCG CCCCC CGGCG               TTTCGATTATCAGCG  70 133
JTM80_RS22110 NONE
JTM80_RS22130 NONE
JTM80_RS22135 5414247 .. 5414278 +  -6.4  -3.99324   GTGGCGTTTGTGGCA      CGGGAGGCAGGCTG ATGG CGGCTTCTCCCCCG       TTTATCGTCATCAAC  66 11
JTM80_RS22140 5415125 .. 5415146 +  -2.2   -2.7371   AATCTAAAATCGAGA           TCGCGATG CAGCTT CATCCCGG            CTTCTGTCCTGGTCT  39 116
JTM80_RS22150 5416308 .. 5416325 +  -3.3  -4.13561   CCGCTGCACTTTGGC             GACCTGC TTGG GCGCGTC              TGTTTTTTGGAAGAG  60 55
JTM80_RS22160 5419688 .. 5419714 +   -21  -3.30124   TATGCTGTTGGACAA         TTTCTCGCGGGC GCG GCCCGCGAGAAA         TTGTCCAAAATCCAG 100 91
JTM80_RS22165 5420728 .. 5420738 +  -6.8  -2.52896   GGGGCGATGGGCAAT                 TCGC GAA GCGA                 TCCCTTCGAGGATCG  50 109
JTM80_RS22175 5424523 .. 5424533 +  -6.8  -2.89564   CGGGGCCAGATCCAT                 CAGC CGC GCTG                 TGTCTAGGCTGCGAC  54 313
JTM80_RS22200 NONE
JTM80_RS22210 5431094 .. 5431106 +  -3.3  -2.79327   CCGCCCCAGACAATC                CTCCG CCC CGGAC                ATTTGGCTGCCGTAC  41 94
JTM80_RS22215 NONE
JTM80_RS22220 5432007 .. 5432025 +  -9.5   -3.1733   TGCTGCTGCGGTCTT             GCCTGGC AACGG GCCGGGC             TACTTTTCTGACAGG  68 84
JTM80_RS22230 5435365 .. 5435392 + -15.6  -4.59773   AGTCCAATCGTCAAG        GGCGCTCTTCTG CTTT CGGAGGAGCGCC         TTTTTGGCAGTGCGG 100 111
JTM80_RS22240 NONE
JTM80_RS22245 NONE
JTM80_RS22250 NONE
JTM80_RS22255 5441128 .. 5441154 +  -2.3  -3.97043   GATGGGGCGAGAGAT         GGAAAAACGAA ACCTC TTCGTTCTTCG         TTCTTCTCTCTTCCC  55 47
JTM80_RS22260 5441595 .. 5441610 +  -7.5  -3.66921   TCCGCAGTTGCCGCT              GGCGG GCACTG CCGCC               TTTGCCCTTGGCGTT  63 193
JTM80_RS22275 NONE
JTM80_RS22280 5444107 .. 5444119 +  -9.1  -3.57039   GAAATTGCCACCGCT                CGTCG TCC CGACG                TTGTGGTTCTCGATG  70 327
JTM80_RS22300 5448023 .. 5448037 +  -2.8  -4.28361   GGAGAGTTGTGTTTT               CCAAAA GCC TGTTGG               TTTTGCTGGACTTGC  61 335
JTM80_RS22305 5448338 .. 5448363 +  -4.8  -2.80344   TCGACCCAATCGCAG         TCAGCCT-TCA GCGAG TGGTAGGCTGA         GTTCTTCACTCCAAC  45 5
JTM80_RS22310 5448865 .. 5448884 +  -9.3  -4.28375   ATTAGGACTGTGAGG            GGTCAGC CAGAGC GCTGACC             TTTTGCGTGTCTTCG  83 56
JTM80_RS22315 5449600 .. 5449612 +  -3.3  -3.65426   CACTCGTCGGGACGT                GCGAT CGC AGCGC                TTTGAACATTTCTCG  52 162
JTM80_RS22325 5454520 .. 5454548 +  -5.2  -3.15544   CAGCCCGACTAAAGG        GGTGGCTGCG CTAATGGCT CGCATCCGCC        TTGCTACGCCTGCCG  51 12
JTM80_RS22330 NONE
JTM80_RS22335 5455720 .. 5455753 +  -3.7  -4.08216   CAACTCCAACTGCAC     CCGCGCCGTCTGCTT TTCC AGGTAGGCGGTGATG      TTTTCCAGCACCTCC  60 305
JTM80_RS22345 5458405 .. 5458422 + -11.3  -5.79588   GAAGCGAATGGCCAG             GAGGGAG GTGA CTCCCTC              TTTTTTTAGTTTTAG 100 117
JTM80_RS22350 NONE
JTM80_RS22355 5459984 .. 5460002 +  -9.6  -3.55815   GAGCCGGATCGGAAG             TCCCCTTT GAT AAGGGGGA             TTTAGGGGGATCTTT  74 189
JTM80_RS22360 5460632 .. 5460643 +  -2.2  -4.39426   CAGTCGCAAAACAGC                CCTG GCAA TAGG                 TTTTCTAGCCCTCTG  62 132
JTM80_RS22375 5463193 .. 5463216 +  -2.3  -3.30474   AACCAGCTTGGACAC          CGGGCCGAG ATATTG TTCGACCTG           TTCGTAGTTATCGCC  44 172
JTM80_RS22390 5465521 .. 5465559 +  -9.5  -3.69216   ATCGACAATCTAAAA  CCGCTCAACTGAGGCTGC CGCT GCGGCAACGGTTG-GCGG   TGTTTTCCATGCCGC  77 102
JTM80_RS22400 5467383 .. 5467419 +  -5.1  -3.70773   AGAACAGATTATAGG   GCGGCTGCAAACTGTC GATTCG GGCATATTGC-GCCGC    TTCTTCGATCTGAGC  56 486
        ftsE NONE
JTM80_RS22415 NONE
JTM80_RS22420 NONE
JTM80_RS22425 5470791 .. 5470821 +  -6.1  -2.66373   CGGGGGCAGCGAAAA      CTGGGTCGCCTCCG AGCG TGGGGACGACC-AG       TGAATTGTTAGCATT  48 336
JTM80_RS22435 5472029 .. 5472045 +  -2.1  -3.84719   ATATCGGGGCTGAGC              CACCGTC GCT GAGGGGG              TTTCGATTTGAAAGT  53 136
JTM80_RS22440 5473411 .. 5473424 +  -2.3  -2.95515   GAATCGACGATCCCA               TCCCC CTAT GTGGA                CTTTCGATTTTAGAT  41 145
JTM80_RS22445 5474417 .. 5474428 +  -5.8  -3.17212   GGAGGCACTAAGGTG                CTGG AAAC CCAG                 TTAATCCGGTAATCA  53 55
JTM80_RS22450 5475478 .. 5475488 +  -4.6  -4.48333   TGCTTCATTCGTAGA                 GTCG GGC CGGC                 TTTTCGTTAATGTGT  68 80
JTM80_RS22475 5480810 .. 5480833 + -10.3   -4.6759   ATTGGTACTGACTCG          TAGCCCGGC CCCAGT GTCGGGCTA           TTTTATTCAAATCTT 100 94
JTM80_RS22510 5487564 .. 5487592 - -13.1  -4.34402   CCTCGGACATCAAAA        CCCGGAGCATCCG CAG CGAACGCCCCGGA        AAACCGCAGATGAGA 100 262
JTM80_RS22505 5484825 .. 5484843 -    -8  -3.56568   CAACGAGTGCTTAAA             GCGCGCCC AGA GAGCGCTC             TGGGAGCTTTATCTG  67 303
JTM80_RS22500 NONE
JTM80_RS22495 5483531 .. 5483555 - -15.8  -3.53343   AACCCTCGCCCTAAA          TCCCTCTCCC AGAGA GGGAGAGGGA          CTTCTAATCCGGCTC 100 305
JTM80_RS22490 5482248 .. 5482274 -  -3.7  -5.15634   CACGGCATTAAAAAA         TCGCTGCACAA GGAGG CTGCACAACGA         TTTGCGGAAGTCAAG  78 241
JTM80_RS22485 NONE
        rsmA 5480641 .. 5480658 -  -3.5  -4.15044   CGGTTGCTGAAGAAA             GCTTTATC GAA GA-AAAGC             CCTTTGCCATCGTCG  60 220
JTM80_RS22470 NONE
JTM80_RS22465 5477766 .. 5477778 -  -6.2   -3.1634   GGCGAAAGTAGGCAA                GCGC AGATA GCGC                GATCGCTCCCCGATG  53 357
JTM80_RS22455 5475326 .. 5475348 -  -3.2  -3.14344   CATCGGTGGGACTAA           GCCAGGCGGA AAT TCAGGCGGGC           TTTTATGCGGGCGAC  43 144
JTM80_RS22430 5470535 .. 5470549 -  -3.4  -4.36596   CCTACAAGTAAGAAA               GCGATG TTG CTCCGC               AAGGCTTCCGCCAAC  61 45
JTM80_RS22405 5466541 .. 5466552 -  -2.2  -3.13522   ATTGCCCCAGCAAGA                CCTG AAGA CAGA                 ACTGGACACACTGGC  41 404
JTM80_RS22395 5465237 .. 5465249 -  -3.3  -3.37975   ATTTAGTATCCAGAA                GGGCA GAG TGCGC                TACACCCTCTTGGGT  47 301
JTM80_RS22385 5463792 .. 5463802 -  -8.2  -3.79251   GACGGCAGGACTAAA                 GCGG AAC CCGC                 ACAGGCAGATACCGA  70 10
JTM80_RS22380 5462866 .. 5462877 -  -7.2  -3.13403   TGGTGTGGATGAAGA                CCCG GTGA CGGG                 TTCCGCCCACTGCGC  54 272
JTM80_RS22370 NONE
JTM80_RS22365 5460292 .. 5460313 -  -6.6  -4.18934   GAGGAGGGCAAGAAA           GTGCCCACC CTGCT GGTGGG-AC           TTAATGCCCAGCGGC  69 244
JTM80_RS22340 5455099 .. 5455143 - -24.5  -2.92642   ATTAGGACTTAGACA GTCGGACAGTTTCTCGCGGGC GCA GCCCGCAAGAAACTGTCCAAA ATCCAGCAAGCTTAT 100 428
        priA 5449025 .. 5449045 -  -6.1  -3.53091   ATTCTCTTCCTCAAA            TCCGCCG TGGGATT CGGCAGA            GCCGACTGGACTGGA  58 524
JTM80_RS22295 NONE
JTM80_RS22290 5444237 .. 5444249 -  -3.3  -3.61764   GCACCAACTGGGAAA                CAGAC TAT GCCCG                TAAGGTTGAGGAATG  49 354
JTM80_RS22270 5441711 .. 5441735 -  -4.1  -3.60296   CAGGTCTATTCTAAA          GATTCTCCTGC AGG GCTGGCGATTC          CGGATTTCCGCTGAG  52 80
JTM80_RS22265 5441135 .. 5441147 -  -4.1  -4.72846   CGAGAGATGGAAAAA                CGAAA CCT CTTCG                TTCTTCGTTCTTCTC  68 297
        argF 5434952 .. 5434964 -  -7.7  -3.14564   GGAGCGTGGCATGAA                CAGCA GTT TGCTG                GTGCAGGCGCTGGAT  57 514
JTM80_RS22225 5431680 .. 5431695 -  -4.6  -2.86164   TGCCCAATCAGCAGA              CGCTCA CCTT TGTGCG               GGTGGAACAAGATTC  44 355
JTM80_RS22205 NONE
JTM80_RS22195 5428124 .. 5428140 -  -2.9  -3.53012   GGTGCGGGCTTCAAA              GAGGGCA ATC TAGCCTC              ATCATCTTGCCGGAT  49 113
        mutS NONE
JTM80_RS22185 NONE
JTM80_RS22180 5424279 .. 5424290 -    -3  -3.57119   CAGATATTCGCTAAA                TTCT TCCG AGAA                 CTTCAATCTCGCCCT  49 9
JTM80_RS22170 5420394 .. 5420414 -  -3.9  -4.15565   TCTACGACCCCAAAA            CGCAGGA CTTTTTT TCCGGCG            ACGTGATCTACGACG  62 285
JTM80_RS22155 5415964 .. 5415974 -  -2.4  -3.01791   ACTTTTGGCTTAACA                 GCGG CAA CGGC                 GGTGGTGTTACAGGG  41 326
JTM80_RS22145 5414757 .. 5414770 -  -3.7  -3.58522   AGGACTATTCCCAAA               CGGGC GATC GCCTG                TTCAATGGAATGCTG  51 393
JTM80_RS22125 5410322 .. 5410350 -  -3.1  -3.10761   ACCGCAACACAGAGA        GCTCCAAACCAAA AAT TTAAGTTCGGATC        AGCCCAATCTCACAC  44 75
JTM80_RS22120 NONE
JTM80_RS22115 5407332 .. 5407350 -    -6  -3.62224   AGACTTGTCTAACAA             GCTGGA TCGGCTT TCCAGC             GACGTTGAAACATTT  58 193
JTM80_RS22105 5402926 .. 5402936 -  -5.4  -2.54896   GTCGGAGCTAACGCA                 CAAC AAC GTTG                 ATGATCTGCTGATGG  45 217
JTM80_RS22090 5398634 .. 5398657 -  -2.2  -3.06569   CCAATTCCCGAAAAC          CTGGGAGCGC ATTT GCTCTACCCG           CTGCGGCGGTGGCTG  41 157
JTM80_RS22080 5396233 .. 5396246 -  -2.3  -2.75521   ATCAGAGTCGTAAAT               TGGGC TTTA GCCGA                GCGATGCATCGGTGA  39 18
JTM80_RS22025 5382472 .. 5382499 -    -7  -4.86862   TGCAAAAAAGCAAAA        CAGGACGCAAGT ATAC ACTTACGCCCTT         CTTCTGAACTAGGCT  82 133
JTM80_RS22020 5379944 .. 5379954 -  -2.4  -2.88544   GTGGATTGCCACAGA                 GTCG ATG CGCC                 GGGCGTTTGAGGGTT  40 244
JTM80_RS22010 NONE
JTM80_RS22005 5378621 .. 5378635 -  -3.4  -3.05384   CTTGTTTCTAGCGAA               GCGGCG CGT CAGCGC               GGGGATTTAGGGGGA  44 83
JTM80_RS22000 5377305 .. 5377320 -  -4.6  -3.76402   ATCTGATGTATCAAA              CGCTGG ATCG CCAGTG               GACGGTAAAAGGGCT  56 468
JTM80_RS21990 5373936 .. 5373947 -  -5.8  -3.55444   CCGTCACCCGGCAAA                CTGC CCCA GCAG                 CGCCAGAAACCGCTC  59 2
JTM80_RS21985 5372646 .. 5372688 -  -6.1  -3.17051   GTGCCAGGATGAATA CGTGGCGCTGCTGCCGCCCG ATGC CGAGTTGCAGCACCGAC-CG CTGACCTGGGAGGAA  53 350
JTM80_RS21975 5371061 .. 5371075 -    -7  -3.64703   GCTGCGGGAGCTAAA               GCCTGC GGT GCGGGC               GTTCGAGTCCTTTGG  63 512
JTM80_RS21950 5364665 .. 5364679 -  -3.5  -3.78962   CGAAACATAGCGAAA               CCGCA GGGGT TGCGA               GTAGGTTAAGTATTC  54 329
JTM80_RS21945 NONE
JTM80_RS21940 5362749 .. 5362805 -  -6.2  -4.35017   GAAAAATGGAATAAA GAAAAACGAAAAAGGAAAAATGGA TCTTCGCTC TTCATTCTTCATTCTTCGCTTTTC TCTCTTCGTTCTTCG  71 105
JTM80_RS21935 NONE
JTM80_RS21930 NONE
JTM80_RS21925 NONE
JTM80_RS21920 NONE
JTM80_RS21915 5355377 .. 5355435 - -17.7  -2.66291   TACACAGCCATAGGA CTTACGCAGTTGGACGATTTCTCGCGGGC TGC GCCCGCGAGAAATCGTCCAAACCC-CA-G AAACCTTAATTGCAA 100 156
JTM80_RS21900 5350708 .. 5350724 -    -8   -3.5394   AAAGCTGGCTCTAAA              GCTGCT TCTTG AGCAGC              AGCGACTCCGCCATT  67 4
JTM80_RS21890 NONE
JTM80_RS21885 5344480 .. 5344492 -  -6.2  -4.10429   AAGCAGGGGGCAAAA                CGGC TGACT GCCG                ATCTCCGCCATGCGC  69 224
JTM80_RS21870 5341085 .. 5341097 -  -6.3   -3.9122   CAGCTTGCCAAAGAA                GCTTA ACC TAAGC                TCTCCAAATTCTATC  64 240
        ndhL 5340658 .. 5340673 -  -3.2  -4.37092   ATCTGCGTCACAAAA              GCCG CTGATCCT CGGC               AAGCACTGTCACTGT  61 121
JTM80_RS21855 5339103 .. 5339113 -  -6.8  -3.15013   AGGCTACAACACAGA                 GCTG CGG CAGC                 GCGGCACAAACCTGT  54 411
         cax 5335788 .. 5335803 -  -4.7  -3.25015   GCGAACCATCACGAA              CCTGT GGATCG ACAGG               AAATTTTTCAGGCTC  49 448
JTM80_RS21825 5331914 .. 5331927 -  -8.1  -3.14211   AGGGTTCCCCACCAA               GGGGA TGCA TCCCC                TGCTTGGCGGAAGTG  62 86
JTM80_RS21820 5330232 .. 5330253 -  -9.3  -2.83403   TTGTTTTCATCAAAT           CGACGGGGC GATC GCCCCTCCG            CCCGCTGATACGCTG  61 360
JTM80_RS21795 5327951 .. 5327992 -  -8.6  -4.12532   TTTTTGACACATAAA GTCAGACCCGCCCGATCG AATTTA CAATCGGACGGGGCTTGC  TTGCGTTTAGGTCAG  76 72
JTM80_RS21790 5327523 .. 5327533 -  -6.8  -3.14931   TCCACTGCCGAGGAA                 TCGC TCA GCGA                 AATCCTCAAGGCTCT  56 31
JTM80_RS21785 5326674 .. 5326688 -  -4.2  -3.56568   GAACTAGTTCCCAAA               GCCACC TCG GATGAC               TTTATCAGCGTGCCG  51 321
JTM80_RS21760 5318961 .. 5318976 -    -4  -4.04206   TTACCTGGACAGAAA              TGCGCGA CGA TCGCG-A              GCTAATGAAGCTCGA  60 174
JTM80_RS21745 5315928 .. 5315953 -  -6.9  -3.21064   TCGAGAACTAACATA         GGCGTTTGTCGA TTC TCGGCAAA-GCC         CCAGCGAATCCGTAA  58 52
JTM80_RS21730 NONE
JTM80_RS21725 NONE
JTM80_RS21720 NONE
        bioD 5310660 .. 5310671 -  -2.2  -3.14261   TAAAAAGGTATTTAA                GCTC GAAA AAGC                 TGATCAAATGCTTGC  42 10
        bioA 5309159 .. 5309183 -  -4.1  -2.78596   CAGGTTCTCATCATA          TCCCTAGCGGG TGA CCCTCTAGCGG          GTAGAAGCTTTCAGG  44 186
        bioB 5307934 .. 5307947 -  -3.7  -3.86935   GAAGTATGACAACAA               CTGGG TAGA CCCGG                CACTAGTGCTGCGAG  57 194
JTM80_RS21675 NONE
        trpA 5300001 .. 5300012 -  -5.8  -3.71848   TCGTGGGACGAAGAA                CCTG TTCG CAGG                 GAGCGATCGCCCCTG  62 404
        cpdA 5299094 .. 5299138 -  -7.1  -3.05294   GCAAACCTGGGAACA GCTAGCCTCCCTGCCCTAG AGACTGG CTACACCAGAGAGGCTTGC CGCTCCGCCCGCACC  56 7
         efp NONE
        accB 5297795 .. 5297806 -  -7.2  -3.62597   CGCATTCCTGAAGAA                GGGC GATC GCCC                 TTAGCCAGGATTCAC  64 26
JTM80_RS21645 5296654 .. 5296672 -  -5.2  -2.78816   CCAGTCGCTATCACA             GCGATCGC TAG GAAATCGC             ACCCGCAGAATTGCC  48 108
JTM80_RS21635 5294733 .. 5294751 -  -2.3  -3.31196   GCAAACTCAGAGCAA            CGCGCTGC TGTG GCTG-GCG             CTCACTTGTTTCATG  44 228
JTM80_RS21625 NONE
JTM80_RS21620 5290734 .. 5290777 -  -6.7  -4.72272   TCTCTGCATGAAAAA CCGCCGACCTGAAATTACTC TATCC AAGGAGATTCAGG-CGGCGG CGCTCAGACCGATTC  82 112
JTM80_RS21610 5287584 .. 5287610 - -11.7   -5.4588   GAAAAGCACAAAAAA        CCCCGGATTTCT TTGA AGAA-TCCGGGG         CGATTCACCGTTTTG 100 108
JTM80_RS21580 5280411 .. 5280422 -  -7.2  -3.54676   AGTCAGGGAAATTAA                GGGC GATC GCCC                 TTCAGGAATATCGCA  64 60
JTM80_RS21575 5279666 .. 5279684 - -13.2  -3.55548   CAAGATCCCCCTAAA             TCCCCCTT CAA AAGGGGGA             CTTTAAGGCGGTTTC  86 114
JTM80_RS21555 5274948 .. 5274959 -  -3.6  -3.54129   GAGACGTGCTGCAAA                CGGC GATC GCCA                 ACAAGGGCACCACCT  51 219
JTM80_RS21540 5271572 .. 5271592 -  -4.6  -2.76422   GACCCCGAAAAAATT            GCCGGACT GATGG AGCGCGGC            GTGATCGAGGTTGCG  44 419
JTM80_RS21505 5263632 .. 5263652 -  -2.4  -4.08692   CAAGTGGTTGCAAAA            GGCAGGGC GCTCT GGCTTGCC            AAACAGCTTGCAGCG  55 184
JTM80_RS21495 5262388 .. 5262408 -  -4.7  -3.04322   GGCAAGCGGGCAACA            GGCGATC GCCCAAA AATCGCC            CCACATCGAACACAT  48 117
        pyrR 5261419 .. 5261435 -  -2.1  -5.93252   GGCAAAAAGAAAAAA              CGCTCCC GCT GGCAGAG              ATTAAATCAGTTGCC  95 309
JTM80_RS21470 5255476 .. 5255497 -  -7.3  -4.05446   GTTTTTAATGACAAA           CCGTTTAAC GACC GTTTAACGG            ATGACTCAAGAGATT  71 50
JTM80_RS21465 5254676 .. 5254694 - -13.2  -3.53811   TCGATCCCCCTTAAA             TCCCCCTT AGT AAGGGGGA             CTTCCGGAGCATCTC  86 124
JTM80_RS21450 5251340 .. 5251364 - -14.3  -3.60098   AGCCCTCACCCTAAA          TCCCTCTCCTG CTC CGGGAGAGGGA          CTTCAAACCTATGTC  89 194
JTM80_RS21445 5249073 .. 5249092 -  -3.4  -3.14564   GCACGGCTCTATCAA            CTGCCCGG AGCG CTGGGCAC             GCTGGGGTTTATTAG  43 346
JTM80_RS21435 5245702 .. 5245714 -  -4.1  -3.28537   ACAGCGAACGATCAA                GAGAC TTA ATCTC                AAAGATACGAAGCTA  48 230
JTM80_RS21430 5245282 .. 5245311 - -16.5  -3.68936   TATCAATGGCAATAA       GCGCCAATTACCG TGTC CGGTATTTGGCGC        TTTTTAGGGTTTACA 100 88
JTM80_RS21425 5244022 .. 5244032 -  -5.4  -2.82015   CCGATATTCACCATA                 GTTG CCT CAAC                 ATAGTTGCCTCAAAC  48 182
        glsA NONE
JTM80_RS21415 NONE
JTM80_RS21410 5241253 .. 5241273 - -10.3  -3.56643   TGCACACTCGCCAAA            CGCCGCGCC TCT GGCCCAGCG            CCCCGGTCGATCAGC  71 425
JTM80_RS21395 5237860 .. 5237876 -  -7.2  -2.79096   ATTAGAGAAACCAAT              CCGCGG CTTAC CCGCAG              CGATTCATCCGCAGC  56 106
JTM80_RS21390 5236667 .. 5236680 -  -5.9  -3.25088   GGGGAAATGCATCAA               CGCCC GACG GAGCG                AGTGCGTTGCGGCTA  55 189
JTM80_RS21385 5235003 .. 5235036 -  -5.9  -2.75708   CCCCCTTAAAAAAGG     GGGGAACCGAGCCGAG CCG CTCCGGA-GGTTCCCC     TTAACAAGGGGGATT  51 177
JTM80_RS21380 5233530 .. 5233560 -  -5.4  -4.18018   CGGGGGCAGCGAAAA      CTGGGTCGCCTCC GAGCGT GGGGACGAC-CAG       GTGTATTGAATTGTC  66 501
JTM80_RS21375 5233084 .. 5233101 -  -7.7  -3.29511   CGTATGTTTTCAGAA             TCACGGC AAAG ACCGTGA              GGAATTTATACCCGT  61 208
JTM80_RS21365 NONE
JTM80_RS21360 5229974 .. 5230030 - -17.4  -5.59357   ACCAGATTAAAAAAA CAGATCCC-GA-ACCCTGTGCCGCCCGC TGC GCGGGCGGCACAGGGTATTTGGGTTTTA TATTTGTATTTGGGT 100 84
JTM80_RS21345 5226652 .. 5226664 -  -3.3  -4.13945   AGGCTCAGGGCAAAA                CAGAC GAA GCCCG                ACAGGCCCGCGCCCA  60 271
JTM80_RS21305 5218459 .. 5218479 -  -7.5  -3.18681   GCCGAATTTCACGAA            GAGCGGCTC AAG GAACTGCTC            GGACACACGCCCGTT  56 354
JTM80_RS21280 5213001 .. 5213012 -    -3  -3.56959   AGAGAACTTAGAGAA                TTAG AGAA CTAA                 TTCGTCCCCTTACTT  49 35
JTM80_RS21275 5211229 .. 5211246 -  -4.8  -3.54543   ATGCACTTGCGTAAA             TCGCGC TAAATC GCGCAA              GTCAGATCGCCGGCC  54 13
JTM80_RS21260 5207768 .. 5207794 -  -4.2  -3.53012   CTTCCCGCTGGCAAA         CCCTGCGCTACC TGC GGCTGCCCAGCG         CCTTGCCCTATTTCC  51 294
JTM80_RS21230 NONE
JTM80_RS21225 NONE
JTM80_RS21220 5200084 .. 5200113 -  -3.7  -2.92192   CCGGATGCAATGACA       TCACCC-CTAAA GTTCGCT TTTAGAGGGCGA       TCGCACCATAAACGT  45 91
        mnmE 5198250 .. 5198294 - -20.1  -2.72661   TAGTAGGGCTAAGCA GTTGGACGATTTCTCGCGGGC TGC GCCCGCGAGAAATCGTTCAGA ACCTGGGAAATTTAT 100 253
JTM80_RS21200 5194545 .. 5194555 -  -3.2  -3.87869   TGAACCGTGGAGAAA                 CGCA ACG TGCA                 TTTTTCACTATACCG  54 33
JTM80_RS21195 5191799 .. 5191811 -  -3.4  -3.57144   CGGTTCACTGGCAAA                CCTA TGGGG TAGG                GACGCTGGAAGAGTT  49 419
JTM80_RS21180 5189569 .. 5189599 -  -5.5  -2.98823   TGCTTTTCAGAGACA      CCGGGCAG-G-AAGT GCA ACTTGCTCTCCCCGG      AGGAAACTGAGAAGG  49 111
JTM80_RS21175 5188181 .. 5188205 - -15.8  -3.60098   AGCCCTCACCCTAAA          TCCCTCTCCC GCTCT GGGAGAGGGA          CTTCAAACCTATGTC 100 145
JTM80_RS21155 NONE
JTM80_RS21150 5184507 .. 5184520 -  -3.1  -3.36273   GCCCTCGAAGAGCAA               CTGCTG TCT CAGC-G               CATCCATCAGGCTTG  47 135
JTM80_RS21140 NONE
JTM80_RS21135 5181767 .. 5181780 -  -5.9  -3.61398   TTTTTGGCCGAAGAA               GCCCG GATT CAGGC                AGAGCAGGCAAGACA  55 200
JTM80_RS21120 NONE
JTM80_RS21115 5178125 .. 5178138 -  -2.5  -4.09739   GGAATCTCTGGAAAA               TTTTT GACT AAAAA                CTTTTTGACCTAGGG  55 48
JTM80_RS21110 5177092 .. 5177106 -  -4.2  -3.75153   GCTCTGGAAGCTAAA               GCTCAA GTT TTGCGC               CCGCGTCGTGCTGGA  54 319
JTM80_RS21095 5172049 .. 5172066 -  -6.3  -3.72576   GGGGGCGTTAGCAAA             GCG-TTCC AAA GGAATCGC             CCACTTCCCCCGAAT  62 46
JTM80_RS21085 5170402 .. 5170413 -  -3.6  -3.02511   TTCATCGCCCCAACA                CGCC CTCC AGCG                 GCAGCCCTAACTCTG  45 0
JTM80_RS21080 5169589 .. 5169644 -   -11  -5.23316   GACCAGATTAAAAAA CAGATCC-TGAACCCTGCGCCGCCCGC TAC GCGGGCGGCGCAGGTTTTTTGGGTTTT ATATTTATTAATGTC 100 500
JTM80_RS21065 5167222 .. 5167239 -  -9.1    -5.093   TTTAAAACAATAAAA             CCCCGCA TTGC TGCGAGG              TTTCATCTGATCGGA 100 35
JTM80_RS21060 5165816 .. 5165841 -  -3.9  -3.53012   TTGCGGCGGTGGAAA         CGGT-CGCCCAG GCT CTTGGCGCAACG         AAGCGCGTTCTCTTA  52 450
JTM80_RS21045 5163631 .. 5163644 -  -3.9  -3.35542   GGCACCTCGAAAAAT               TCAAT CTTG ATTGA                GAATGACAAGGATAT  50 105
JTM80_RS21040 5162831 .. 5162841 -  -6.8  -3.17219   CACAAGGCGCAGGAA                 GAGC CTT GCTC                 CAGTAACCGGGGGGG  56 258
JTM80_RS21035 5160483 .. 5160520 -  -2.6  -5.64421   ACCCCAAATAAAAAA   TCCGCTGGAGATGTCT GAACAG AAATTTCCCCAGCGGC    AAACCCTTAGCTAAT  84 157
JTM80_RS21025 5157251 .. 5157271 -  -3.4  -3.06969   CAAGCGATCGCAATA           TCAGGACAT CGGC AT-TCCTGA            GTATTGGATTGTCGA  43 331
JTM80_RS20995 5149746 .. 5149779 -  -8.7  -3.24924   GCGTCATCCACAATA     CCGAGTGGCTGGCTC CGCT GCGGCAGCCGCTCGA      CCCGACGCAGCCCAC  63 176
JTM80_RS20970 5144290 .. 5144305 -    -6  -2.52795   AACGGCGCTAATCGA              CGGGGG CGAT CGCCCG               AAACCCTGTTTTTGG  49 2
JTM80_RS20965 5144090 .. 5144104 -  -4.2  -4.18197   AGTTCTGACGCAAAA               GCGACA TTG TGTAGC               CAGCGCTACATCTTG  63 80
JTM80_RS20960 NONE
JTM80_RS20955 5141786 .. 5141801 -  -6.8  -2.72166   TTGCTAACTAAATAG              GGCTGA CCAG CCAGCC               GCGCATAAAGTAGTA  53 2
JTM80_RS20950 5138454 .. 5138472 - -13.2  -2.75536   AAATTAGCTCTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCTTG  79 80
JTM80_RS20945 5137543 .. 5137555 -  -3.3  -3.92373   GAGCTGATTTATAAA                GTAGC TAA GCTGC                CAAGCGCTTGAGCAT  54 17
JTM80_RS20940 5136774 .. 5136792 -  -2.5  -3.82604   CTACTCAACTAACAA            TAGGACTG TGAA CAGTC-TA             CTACTCACTCGCTTG  53 216
JTM80_RS20935 5135895 .. 5135939 - -30.3   -2.9294   TATAGGACTTACACA GTTGGACGATTTCTCGCGGGC TGC GCCCGCGAGAAATCGTCCAAA ACCCAGAAAACTTAA 100 468
        moeB 5134397 .. 5134427 -  -3.8  -4.36914   CCTGCCGCCACAAAA       CGGGCGATCGCCCC ACG GGAGAGATCATCGG       TTGACCTAGTGTTCC  64 46
JTM80_RS20925 5133046 .. 5133080 - -14.5  -4.72333   AACCAGATTTAAAAA    GAAAAACGGGGC-AAG CCCC CTTAGCCCCGTTTCTC     AAACAAGAGGTGCCT 100 167
JTM80_RS20915 5131882 .. 5131899 -  -4.1  -2.76261   TCTGAATCCCTAAAG             CTCCAGCA TAG CGC-GGAG             GGTAAAGGCAATGAA  44 2
        rbfA 5131172 .. 5131202 -  -3.3   -2.8372   GAGTCGTCATGAAAC       CGGGCTAAAAATT GGGCT AATCCTCAGCGCG       AATGAGGGAATTGTC  41 11
JTM80_RS20905 5129127 .. 5129137 -  -6.8   -3.5627   AGATCAGGTGCTAAA                 GGTC ATC GACC                 AGAGCCGCACGCCCG  60 408
JTM80_RS20890 5124967 .. 5124981 -  -6.4   -3.7108   ACGGCCAGAGCGAAA               GCATCC GGA GAATGC               ACTGAATCATGCACT  62 200
        speB 5123809 .. 5123825 -  -2.1    -3.695   TTCAAAGACTGCAAA              CGGCAAC AGC GACACCG              CTACCCTTTTGTAGC  50 170
JTM80_RS20880 5123196 .. 5123210 -  -4.2  -3.89524   ACTTCATTGTAGAAA               CTTCAG GGG CAGAAG               CTTCAGGTTTGGGTG  59 194
        pcrA 5120536 .. 5120567 -  -2.2  -3.18264   CTCGCCATCTACGAA      CTG-CTGTGGACTCC CCA AGACCCCACCGACAG      CCTCAGCCGCGAGGA  44 118
JTM80_RS20865 5117254 .. 5117268 -  -3.4  -4.58395   GGGACGGCTCAAAAA               GCCAGC GCC ACGGGC               GGCTACGACAACGTT  69 317
JTM80_RS20845 5112378 .. 5112391 -  -5.2  -2.66272   CTCCATTGAAATTCA               GGCG GGCGAT CGCC                TGTTGCTCTGCGGCA  46 206
JTM80_RS20835 5108830 .. 5108857 - -13.4  -4.96501   CCTCATAAAAAGAAA        GAAACCCCCGGC CGAA GCCGGAGGGTTC         AATCAGGGTGCATCT 100 142
JTM80_RS20830 5107094 .. 5107126 -  -5.6  -2.58579   TTAAGCCTGGAGAAG     CGCTTTGGAGAGGGC GATC GCCCT-TACAAACCG      GCTTCTCACCGATTC  47 441
JTM80_RS20720 5080032 .. 5080073 -  -2.9  -3.36273   TTTTTCTAACAGGAA TGCGATCGCTCGGCATTACC ACT GCCATTGAGG-GCGATCGCA CGACTCGCTATGACC  47 148
JTM80_RS20710 5077989 .. 5078046 -  -6.4  -4.07687   ATCGCTGGGCTAAAA CTCGGAGTTCTAAAGCCA-AAATAAGGC TCTT GCCTGAAGGATGGCT-CAGAACTCCGAG TTTTGTGTGACTGGG  66 150
JTM80_RS20700 5076156 .. 5076169 -  -2.3  -3.84039   AGATTAATCAAAATA               CGCCT CACT AGGCT                AGAAATTGCTATAGC  53 296
JTM80_RS20695 5075039 .. 5075053 -  -5.7  -2.75536   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 127
JTM80_RS20690 5073822 .. 5073839 -  -3.3  -3.76224   GGCGCATTGAGGAAA             TCGGCCC GGCA GAGCAGA              TCTATCGCCAGCCCC  52 158
JTM80_RS20680 5071390 .. 5071401 -  -2.2  -3.00585   GATGACATGAAACTA                CCTG CCTG CAAG                 AGCAATCTAGACTAA  41 105
        glgB NONE
        cobA NONE
JTM80_RS20665 5066545 .. 5066555 -    -4  -4.56775   ATCCTTTTCCAAAAA                 GATT GAG AATC                 ACATCGGTGCGATTT  70 150
        psbA 5064383 .. 5064414 - -14.6  -5.33785   AAGCAGCATAAAAAA      TTGGGATGGAAGAA CAAA CTCCTCCATCCCAA       TCTGATGAATTCAAA 100 68
JTM80_RS20650 5063213 .. 5063223 -  -3.2  -3.92075   AGGCTGATCGAGAAA                 GTCA ACA CGAC                 ATCCAGAGAGATCCG  54 95
JTM80_RS20645 5062514 .. 5062524 -  -3.2  -4.08216   GCATCCCGGTGAAAA                 GCTA CGC CAGC                 GCAAGCTCGCCGCTG  58 119
        cimA 5056951 .. 5056969 -  -2.2    -2.567   AGGAATAGGATTAAT             CCCTGCTG CTT CGGCCGAG             TTTCGACTTCAGGTG  39 34
JTM80_RS20615 NONE
JTM80_RS20600 NONE
        kaiB 5050728 .. 5050738 -  -3.2  -3.08774   TAGAAACCTTGAAGA                 CTCG AAG CGAA                 GATTCAATGAGGTTT  44 201
        kaiC NONE
JTM80_RS20585 NONE
JTM80_RS20580 5046731 .. 5046742 -  -5.8  -3.64487   CCAGATTCGGAAGAA                TGGC CATC GCCA                 AGGAAAACAAAATTA  58 222
JTM80_RS20560 NONE
JTM80_RS20555 5035023 .. 5035048 -  -4.7  -3.04398   CGTCTTTCTCAAAAT         TCGCGCTTA CACCACAC TCAGCGCGA          CTCCGCAAAATTAAG  48 229
JTM80_RS20550 5034492 .. 5034516 -  -2.1  -2.62515   AAGGTCTTGACAGGA          GACTTCAGG GCGATCG CCAAAAGTC          TCGATGCACCGCTAC  39 5
JTM80_RS20545 5032514 .. 5032546 -  -3.4  -4.68724   CCAGCTAACAGAAAA     GCACTACCTC-CATC CCCA GATGCGCGGCAGCAC      CTCGATCAAAGTCGT  69 478
JTM80_RS20535 5029618 .. 5029655 -  -3.2  -4.74801   GAATCCCATCAAAAA   GGGGGCTGGGTGAGCC TGTAGT GACCCGTCCAAACCCC    CTAGTTTGTCATAGC  66 68
        lepB 5025328 .. 5025355 -    -9  -3.28924   GATGGGGCTGGATAA        CACGGGCCAGGC GATC GCCCTGCCCCTG         TCTACCAGCACCGAG  63 476
JTM80_RS20480 5015043 .. 5015055 -  -4.8   -3.1332   GAAGAGATTATGGAA                GGTG TCTGT CACC                ACTCCCTGAGAATTC  48 321
JTM80_RS20470 5012766 .. 5012809 -  -5.1  -3.04398   GGCGTGTTTTAAAAC CCTCTGATCCCCCCTAGCC CCCCTT AACAAGGGGGGAACCGAGC CGGGCCACTCCGGAA  51 354
JTM80_RS20465 5012026 .. 5012052 -   -21  -3.31461   TACGCAGTTGGACAA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TTGTCCAAAATCCAG 100 98
JTM80_RS20460 5009823 .. 5009839 -  -5.1   -4.4261   GTTCTAAGATCAAAA              GGCACAA AAT TTGTGAC              AAGGCCCATCAGCCA  69 167
JTM80_RS20450 NONE
        sfsA NONE
JTM80_RS20440 5008142 .. 5008160 -  -5.8   -2.6072   GATGGAAGCAAGCGA             GTCGGCAG CAT CGGCCGCC             AGCGTGACACCAGCT  50 286
JTM80_RS20435 5006630 .. 5006640 -  -4.6  -3.72405   TTTACAAAACCAGAA                 CCCG ATG CAGG                 CGGCTCGCACCCTGT  56 318
JTM80_RS20430 5004345 .. 5004394 - -22.9  -4.48483   TATAATAAATATAAA GCCCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGAT CTGTTTTTTAATCTG 100 264
JTM80_RS20425 5002866 .. 5002892 - -13.8  -2.72344   CTGGATTTTGAACGA         TTTCTCGCGAGC GCC GCCCACGAGAAA         TCGTCTAACTGCGTA  79 519
JTM80_RS20405 4999941 .. 4999989 -  -8.8  -3.86935   GAACTAGCACAAGAA CCAGCACGCTCTTGG-GGGCACC GACG GGCGCAAACCAAGAACGCTCTGG AAAACCAGAAATAAA  75 54
        cysC 4998862 .. 4998879 -  -3.3  -3.96298   GAGCTACCAACGAAA             TTGCGAG AAGC CCCGCAG              GTTCTTGACTGCCAT  54 490
JTM80_RS20375 4993836 .. 4993860 -  -7.1  -3.25823   TGGGTTCTAGAGGAA          CCGCCTGAT GCATCAG AGCAGGCGG          CACAACATCGCTCAG  56 393
JTM80_RS20365 NONE
JTM80_RS20360 4990945 .. 4990955 -  -3.2  -3.92075   ACTGCCATGCACAAA                 GCAA AGA TCGC                 CATGCCGCAAACTCA  54 482
JTM80_RS20350 NONE
JTM80_RS20345 4988817 .. 4988834 -  -2.8  -3.87815   GCGCATCCTGAGAAA             TTTATC GCAAAG GATAAA              CAGCCCCCAATTTTG  54 77
JTM80_RS20340 4987837 .. 4987853 -  -5.8  -3.53343   AAGCCCTGCGCGAAA             GC-GGGC GATC GCCCAGC              GCTCGGTTGCAGGCT  59 39
JTM80_RS20335 NONE
JTM80_RS20330 4986374 .. 4986421 - -26.4  -4.89838   TTAATAAATATAAAA CCCAAAGACCCTGCGCCGCCCGC TGC GCGGGCGGCGCAGGGT-TCAGGA TCTGTTTTTTAATCT 100 222
JTM80_RS20325 4985589 .. 4985600 -  -5.8   -3.2794   TTTGATCCAGAGCAA                TGCC TATA GGCA                 GCAGGTAATCGAGGA  55 366
JTM80_RS20285 4974573 .. 4974586 -  -6.7  -3.52102   ACTCTAGCGACACAA               CCGTA CAAC TACGG                AATCCAAAAAAGTCA  62 123
JTM80_RS20270 4972363 .. 4972377 -  -5.7  -2.63631   TGAAGTGGCAGAGCA               TCTGG ACGAG CCAGA               GGATAGCTGAGGCGT  50 193
JTM80_RS20260 4970662 .. 4970688 -  -8.6   -4.6644   AAGACACGTCAAAAA         GAGGGCAGGAGC AAG ACCCCCACCCCC         TTTCTGCTAACGTTG  86 79
JTM80_RS20250 4968782 .. 4968799 -  -6.2   -4.0896   AAAGCGTCTGCAAAA             GCCCCG TTTGAC CAGGGC              TGAGTCTGCAACGCA  66 66
JTM80_RS20245 4967563 .. 4967579 -    -5  -3.78775   TTGCCCATTACCAAA              GCAGCC ATCGA GGCAGC              ACAAGAACGACTGCG  56 383
JTM80_RS20230 4959800 .. 4959854 -  -4.9  -3.09273   TCGGTGCAAGATAGA TTCCTGCCAGCGTTGCTG-CCT-GCGC CGC GCTCTAGGCCAGCACCGACGGCAGCAC AAACGCCAGCCCAAT  48 2
JTM80_RS20225 4958509 .. 4958552 -  -4.4  -4.14243   GAGCGCATCGCAAAA GGACTGGCAGGGGCG-ATCGC CCA GCGATTCCCCCCAGCGATTTC CACAGAAGAACACCG  63 111
JTM80_RS20210 4954061 .. 4954075 -    -7   -3.7108   AGCGGGATATGCAAA               CGGCGC TGC GGGCCG               CAGAACAGGCTAACG  63 149
JTM80_RS20200 4951390 .. 4951400 -    -4  -3.91084   GCAGCTCTAAGCAAA                 TTCA GTT TGAA                 ACGAACGCGCTAGGG  57 439
JTM80_RS20195 NONE
JTM80_RS20190 4947394 .. 4947419 -  -2.5  -5.01732   AATCTTTTGAAAAAA         CCTTCGCTCTC AAGG AAAAGCGTAGA          GAACGAACTATTCGC  70 33
JTM80_RS20185 4946150 .. 4946166 -  -2.9  -2.57132   TGTTCTCGCTACAAG              GGCTACC TTA GATAGGC              TGGATAACAAGGAGC  40 62
JTM80_RS20180 4945052 .. 4945092 - -11.9  -3.86346   GTAGCGTGGCAGAAA  GCACGAATCGTTGCACGAC AAT GCCGCACAACGATTCACTC  TAGAGGAGACGTTTT  86 46
JTM80_RS20155 4940191 .. 4940224 -  -8.8  -2.95476   ATGATTTAGCACAGA     GGGCGGCGGGCGATC GCGCA GATCGTC-GCCGCCA     CTGGATTGCAGAGTT  63 40
JTM80_RS20120 4934427 .. 4934441 -  -2.8  -3.68827   GAGTCACCATTCAAA               TCTACA TGG TGTTGA               TTGCCTATCTGATTC  52 207
JTM80_RS20105 4930788 .. 4930800 -  -3.3   -2.6063   CTTACCTACAAGCTA                TCGCA TTT TGCGT                GGGTCATCTCAGGTT  40 88
JTM80_RS20100 4929856 .. 4929874 - -13.2  -3.55548   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTT  86 287
JTM80_RS20095 4928658 .. 4928673 - -10.4  -5.28778   AGCAGTCACAAAAAA              GAGGGC GATC GCCCTC               CCTAACCCAGACTTT 100 64
JTM80_RS20090 4927328 .. 4927340 -  -2.7   -3.5774   ATTGAACGTTCTAAA                GAAAA GTG TTCTC                ATCTCTCAATGGATC  49 165
        fldA 4926672 .. 4926690 - -13.2  -3.55548   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  86 115
JTM80_RS20080 4925408 .. 4925422 -  -4.2  -3.56704   TCCCCAGTAAAGTAA               GCACAG CGG CTGCAC               GGAACCTGATGCAGT  54 202
JTM80_RS20060 4921007 .. 4921047 -  -6.8  -3.85698   TCTCTGTCGCAGAAA  GATCCAGCAACCCCGC AGAAGCAGA GCATGGCGGCTGGATC  GGGTTTGCTGTCCTG  66 218
JTM80_RS20050 4920336 .. 4920363 - -14.2  -5.29846   AAGTTCAAATAAAAA        GCGATCGCCCTC CAAA AAGAGCGATCGC         CATTTACTTGTGTGG 100 109
JTM80_RS20045 4919682 .. 4919700 -    -3  -2.80077   GCCGGATAAAACTGA             GGCGCATG AGA CATGGGAC             TGTCCGAATTCAACA  41 185
JTM80_RS20040 4919373 .. 4919385 -  -4.1  -3.68979   GCAAGAAATAAGGAA                TGGAC AAG ATCCA                GTCTCTAATAGCCAA  54 30
JTM80_RS20035 NONE
JTM80_RS20030 4916486 .. 4916504 - -13.2  -3.54424   GTCGATCCCCCTAAA             TCCCCCTT ACT AAGGGGGA             CTTCCGGAGTGGTTC  86 101
JTM80_RS20025 4913971 .. 4914007 -  -9.5  -3.06133   CAATCTGTGATTCAA    TTTGCAATGCAATTTGC AAT GCAATTTGCATTGCGAT    CTGTAATACGGTCAG  68 57
JTM80_RS20020 4910937 .. 4910947 -    -4  -3.15579   TGAACTGGTTAGCAA                 GTTT GCT AAAC                 GCGCTGGCGCTGAAT  46 20
JTM80_RS20015 4910278 .. 4910290 -  -2.6  -4.57837   ATACTCCGCCAAAAA                CCAC CTGAT GCGG                CACTGCGCTAAGCTA  62 427
JTM80_RS19985 4903409 .. 4903422 -  -3.1  -5.25803   AATTGCCATAAAAAA               TTGCC CTAA AGCAA                ATTCACGCAAGCGCT  80 119
JTM80_RS19980 NONE
JTM80_RS19975 4896406 .. 4896417 -  -3.6  -2.74501   AGCAAGTCCTGAAAG                CCCG TCAG CAGG                 TTCGCGCCGTGCAAA  43 402
JTM80_RS19955 4892100 .. 4892110 -  -5.4  -4.44667   GTTTTTAAGAAGAAA                 GGTT AAA AACC                 AGCAGGGGATCAATC  71 54
JTM80_RS19950 4891535 .. 4891552 -  -2.1  -5.55769   GCTTAGAAGAAAAAA             TCTTAGAA GAA TTCTA-GA             CAGGCAGCTTCACGT  84 194
JTM80_RS19935 4888581 .. 4888594 -  -5.2  -3.75629   TACGCCCAAGGCAAA               GCGC GGGCTG GCGC                TGCACGATTTAGACG  58 192
JTM80_RS19925 4885655 .. 4885665 -  -5.4  -2.53164   TCACCGATGATGAAG                 TAGC GCT GCTA                 AAATCCCTGCTCATT  47 140
        mgtE 4883692 .. 4883718 -   -21  -2.71364   CTAGGTTCTGAACGA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TCGTTCAACTGCGTA 100 234
JTM80_RS19915 4882469 .. 4882487 -  -3.9  -3.64318   AATAGAATGACAGAA            CTTA-CGC ACTT GCGATAAG             TTGTCTGGGTTTTGG  52 165
JTM80_RS19910 NONE
JTM80_RS19905 4881083 .. 4881109 - -15.2  -3.31461   TACGCAGTTGGACAA         TTTCTCGCGGGC TGC GCTCGCGAGAAA         TTGTCCAAAACCCAA  90 111
JTM80_RS19900 4880555 .. 4880573 -  -4.5  -2.62616   GGAGTCGCCAGAGCA             GAGTCGC TATAT GTGACTC             CAAGCTTCTCCTACT  44 36
JTM80_RS19895 NONE
        psbE NONE
JTM80_RS19885 NONE
JTM80_RS19880 4878712 .. 4878751 - -10.8  -3.30651   TTGGATACTAGAACA  GCTTGTTAGCAGGTATGA AAAC TCATTTCGGCTAACAAGC   GATCGCCCTAGTTAA  73 33
JTM80_RS19875 4878364 .. 4878399 - -14.8   -4.9792   GATTTCACACAAAAA    GGCTCCAGTATTGCAGC GAT GCCGCCA-ACTGGAGCC    TACGATTCAAGACAA 100 144
JTM80_RS19870 NONE
JTM80_RS19865 4873248 .. 4873271 -    -3  -3.96148   CTTCCCTACGACAAA          GCCCATCAGC TTGA GCTGTTGCAC           CTCCGCGCCGAGGCC  58 486
JTM80_RS19855 4870839 .. 4870857 -  -3.1  -4.08767   TTTACTCCGTCAAAA             CCCTC TGACACGAT GAGGG             CATGGGTAAAGCAGG  56 379
JTM80_RS19845 NONE
JTM80_RS19840 4870302 .. 4870314 -  -4.7  -3.53811   CTTAGCCCGTTTAAA                CCCTG AAG CTGGG                CAGGAGCGCGATCGC  54 162
JTM80_RS19835 4869380 .. 4869395 -  -6.2  -3.06796   TGCTACTGGAGCCAA              TTGAGA GTAT TCTCAA               TAACTGGAGGTTGAA  53 221
JTM80_RS19830 4868214 .. 4868232 -  -7.4  -4.07975   CAACCGAATTACAAA             GCGAGAAA CCA TTACTCGC             CGCAATCGCCCTGAC  68 268
JTM80_RS19805 4860936 .. 4860980 - -12.3  -5.42862   ATAGGCCTAAAAAAA GAACCTTTTCGTGAATCTTGC TGA ACAAGATCCTCAAAAAGGCCC TTTGTGATACGCACA 100 366
JTM80_RS19800 4859537 .. 4859560 -  -7.4  -3.99374   TTCCAGTAATAAGAA          GAGCTACCGT TGAA ACGGGAACTC           CTGCAAAAAAAGACC  71 473
JTM80_RS19795 NONE
JTM80_RS19790 4855823 .. 4855836 -  -3.7  -3.50853   GTTCTTCAAGGACAA               GGCCC TGGT GGGGC                AGATGCTTGGCGTGA  51 180
JTM80_RS19780 4853150 .. 4853169 -    -5   -4.1585   GCAGAATCCCGAAAA            GGCGAT CGCCCAAT ATCGCC             TCGCGCTCCAGGGTG  64 485
JTM80_RS19765 4850771 .. 4850822 -  -5.4  -3.69386   GGAAAAACGAAAAAT GAAGAACGAAAAACAAAAAAGA GCCTCCTT CCCTCTTCGTTTTTCCCTCTTC GTTTTTCCCTCTTCG  59 92
JTM80_RS19760 4849698 .. 4849714 -  -2.1  -4.46976   ACGAAGAAAGACAAA              CTCTAGC GGG GCAAGGG              TGATAGACCGGGAAG  62 204
JTM80_RS19755 4847383 .. 4847402 - -10.7  -2.71924   CATGTGCTGGGAAAT            CCGCCCT GCAACA AGGGCGG             CCACCCGCTGAAGGT  63 118
JTM80_RS19745 4845943 .. 4845955 -  -3.3   -2.8341   TGAAACAACACAGCA                GCCTC CTG GAGGA                CTTGGGTGAGGAGAG  41 155
JTM80_RS19740 4845042 .. 4845052 -  -5.4   -3.6106   TCGAAGATGCCGAAA                 CGAT GCG ATCG                 CACCTAGAAAAGCAC  55 258
JTM80_RS19720 4841908 .. 4841927 -  -4.2  -3.17723   GCAGTGCGAATTGAA            GCGTGATGC ATG GC-TCGCGC            AAGCTACTCAAACAG  48 29
JTM80_RS19715 4841232 .. 4841252 -  -9.7  -2.94354   CCACACAGGGACAGA            GCAGGCC CAACTCC GGCCTGC            CACCGAGTCGCCTGT  67 248
        hflX 4832904 .. 4832941 - -12.9  -3.64703   CGGTTTTTACGGAAA   GAATCAAGCCTGGAT CGGGAGTC ATCCGGGCTTGATTC    TTCCAAATCTCAGTC  83 46
        galE 4831495 .. 4831528 -  -5.9  -5.02439   ACAGAAGCATAAAAA     TCACCACTCGAAGGG CGAT CGCTCCGAGTGGCAT      CACTCAAACTGTCAT  81 265
JTM80_RS19690 4830864 .. 4830886 -  -2.7  -3.60792   GGCTGAACCCGTAAA           GTTAACCGT TGACC ACAGTTGAC           CGCAGTTGGCCGCAG  49 72
JTM80_RS19685 4827983 .. 4828038 - -16.8  -5.23316   GACCAGATTAAAAAA TAGATCCTGA-ACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGTCTTTGGGTTTT ATATCTTATTAATGT 100 268
JTM80_RS19680 4827137 .. 4827148 -    -3  -4.66318   AGCATTTGAACAAAA                TGAA TTAA TTCA                 AGCTTGGTTCACTCA  66 185
JTM80_RS19670 4822940 .. 4822953 -  -3.9  -3.24879   CTGAAAATCGAAAAG               CTTTA TTGC TAAAG                AAAAATCATTACGGC  48 20
JTM80_RS19610 4810225 .. 4810252 -  -2.6  -4.66163   AGGCTGACTCAAAAA        GCTCTGCTGGCT AGCC AACAAACTGAGC         TATCGCTTAGCCAGC  66 379
JTM80_RS19565 NONE
JTM80_RS19560 4795268 .. 4795281 -  -8.1   -3.3879   AAGTGACGCTAAATA               CGCCT GGTC AGGCG                AATGGCCGCATCCGT  61 253
        hemB 4792705 .. 4792723 -  -8.8  -4.17491   ACTAAATGCCGAAAA             TCGGCGCT TAA AGCGCCTA             TTCAGGCCTAAACGA  79 220
JTM80_RS19545 4791584 .. 4791599 -  -3.2  -4.46775   TACGCAAAAGAGAAA              CCCTGC AACC GCAGAA               CCGAACAAAAGGCTT  64 315
JTM80_RS19535 NONE
JTM80_RS19530 NONE
         def NONE
JTM80_RS19520 NONE
JTM80_RS19515 4783938 .. 4783993 - -13.2  -5.23316   GACCAGATTAAAAAA CAGATCCTGA-ACCCTGCGCCGCCCGC GCA GCGGGCGACGCAGGGTCTTTGGGTTTT ATATTTATTAATGTC 100 48
JTM80_RS19475 NONE
JTM80_RS19470 4770837 .. 4770851 -  -2.9   -4.9725   ATTGTTACAGAAAAA               TTGTT GTTGA AACAA               ATCACCCAGATCATC  76 417
JTM80_RS19460 4768811 .. 4768824 -  -6.7  -4.49344   AAATTGACTAGAAAA               TGCAG ACCT CTGCA                TAGCCGCTGCGTTGG  76 85
JTM80_RS19435 4759930 .. 4759962 -  -5.5  -3.23235   GAGAGATGAATTGAA      GTGGGCCAGACGA GGCATTT CCGTCTGGCTCAT      TTTTGCAGATTCTCT  53 161
JTM80_RS19420 NONE
        thiC 4756160 .. 4756179 -  -3.6  -4.65895   CTCCCCACGCAAAAA            CTGAGCCTA GTA TA-GCCCAG            GGGTTGGGGATGGAA  68 92
JTM80_RS19410 4755453 .. 4755474 -  -4.3  -3.72893   TACTGCTTCAGGAAA           CGCTGCTTT AGGA AACGCTGCG            CCAGGAAGCCCCACT  56 39
        argS 4752649 .. 4752677 -  -6.1  -3.29109   GAAAGAGAGAAGAGA        GAAAAGGGAAGAA TCT TTCTTCGGTTTTC        GTTCTTTTTTCTTGT  55 90
JTM80_RS19390 NONE
JTM80_RS19385 4748074 .. 4748086 -  -2.7  -3.95584   CGCCTAGTAACTAAA                TTCCA CGA TGAAA                CTGGTTGCACCGTCT  54 1
JTM80_RS19380 4747070 .. 4747080 -  -2.4   -3.0701   AGAAGCCCTAGGCAA                 GCTG GCT CTGC                 TGGCCGCACAGCTAT  42 193
JTM80_RS19330 4736644 .. 4736671 -  -7.8  -2.62184   GTTGGTCTTACATCA        TCATAGATATGC GGGA GCGTATCCATGA         CCACCTGGCTGAAAA  55 234
JTM80_RS19305 4730531 .. 4730573 -  -2.5  -3.89346   GCTGCATTCGATAAA GTGAATCGTCCAACCCTCC GAGCT AGAGGGGGGGAAGGTTCTC GCCGACGCGAGTGTA  53 441
JTM80_RS19280 4725533 .. 4725551 -  -5.9  -3.15999   CGCCGACAGACGGAA             CCGCGTG GGAAA CAGGCGG             CGACCCCAAACGGCG  49 223
JTM80_RS19270 NONE
JTM80_RS19265 4723158 .. 4723188 - -11.2  -5.25803   AAGTCCGATAAAAAA       TGGGATACAACGGC ATT ACCGCTATACCCCA       CTGCATAGTAGCTGC 100 68
JTM80_RS19230 4713263 .. 4713284 - -12.3  -2.67803   GCGCTACCAAAGTCA           GCCCATTGC CGAA GCAACGGGC            GATCGCCCGCCCCAA  73 47
JTM80_RS19220 4711967 .. 4711981 -  -2.1  -4.90296   AAAACTTTACAAAAA              GCACTC TCAA GAG-GC               GGATTATTGAGAATG  68 97
JTM80_RS19215 4711449 .. 4711495 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  54 233
JTM80_RS19205 4708992 .. 4709006 -  -2.1  -4.90296   AAAACTTTACAAAAA              GCACTC TCAA GAG-GC               GGATTATTGAGAATG  68 460
JTM80_RS19200 4708303 .. 4708333 - -14.1  -4.29981   GAAACATAGCCAAAA       GCGGGGTGAATTA GATTT CAACTCACCCCGC       TTTTGTTTTTACCTG 100 47
JTM80_RS19190 4705176 .. 4705188 -  -3.3  -2.72829   CAGAGGTCTGGAAAG                GGCAC AGT GTGAC                GGTTTTGCCGTGACG  41 168
JTM80_RS19185 4703769 .. 4703784 -  -6.8  -3.27498   GACAGGGGACATGAA              CGCAGC GCTA ACTGCG               TTTAACGAAGCGATT  56 353
JTM80_RS19170 4701785 .. 4701816 -  -8.8  -3.57462   CAGCCCAGCGCCAAA      CGCGCTGAATCTAA CGCG CTAAATCCAACGCG       CTGAGCCAAACACGC  70 63
JTM80_RS19140 NONE
        holB 4695644 .. 4695662 - -13.2  -2.79803   GAACTGGATCGAAAG             TCCCCCTT CTT AAGGGGGA             TTTAGGGGGATCGGT  79 449
JTM80_RS19130 NONE
JTM80_RS19125 4692778 .. 4692792 -  -5.7  -2.75536   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 108
JTM80_RS19120 NONE
JTM80_RS19105 4687694 .. 4687710 -  -2.1    -4.183   CTAACTCCCAACAAA              CTACGGC GTG GTCGTTG              GCGAAGGCGCGGGCG  57 9
JTM80_RS19100 4686798 .. 4686812 -  -4.2  -3.20991   TTCAATCTAAGCCAA               CCCC GGCGGTA GGGG               TTCTCCGCAGCGCTG  50 2
        rsmI 4685830 .. 4685848 -  -7.4  -3.17688   CAAGCAGGGGAGCAA             GAGAGGCT TGA AGTCTCTC             TCCCGCTTTGGGAGA  59 86
JTM80_RS19080 4681286 .. 4681310 - -13.6  -3.60098   AGCCCTCACCCTAAA          CCCCTCTCCC TAGGC GGGAGAGGGA          CTTCCAAGCCGACTC  86 152
JTM80_RS19070 4676550 .. 4676568 - -13.2  -3.54424   TCCGATCCCCCTAAA             TCCCCCTT GGT AAGGGGGA             CTTCCGGAAAGCAGC  86 83
JTM80_RS19060 NONE
JTM80_RS19055 4673059 .. 4673071 -  -4.8  -4.82667   TCAGCACACCAAAAA                GCGT GGTGA ACGC                CTGGATCAAGAGTCC  76 223
JTM80_RS19035 4666173 .. 4666187 -  -2.7  -4.15044   GCCCTGCTGAAGAAA               TGCCC CCGAC GGGCG               ATCGCCCAACCTGTT  59 363
JTM80_RS19020 4659448 .. 4659468 -    -9  -3.41051   TGACGTGCAGGACAA           GCCC-CTGC TAAT GCAGCGGGC            CCTCAGCGAACTGCC  64 377
JTM80_RS19005 4656730 .. 4656755 -  -8.3   -4.4727   CTAATAGTGACAAAA         GGCGCACTTATC CAA GA-AGGTGCGCC         TTTTCCCTAAATTTT  82 151
JTM80_RS18985 NONE
        plsX NONE
JTM80_RS18975 NONE
        fabD NONE
JTM80_RS18965 4645862 .. 4645891 -  -5.7  -3.59979   GCCCCGCATTCCAAA       TGTGGCTTGGACT TAGG AGTGCAAACCGCA        AGCCCCTAAGCACTT  59 111
JTM80_RS18960 4645245 .. 4645271 -    -5  -3.91072   CCAAAGCGGGAGAAA         GGGAGCCGGATT GGA AGTCCCTCTCCC         GCCTTGGGAGAGGGA  61 108
JTM80_RS18935 4639224 .. 4639245 -  -2.1  -2.68823   GCCTCCTGAGACAAT           CGCGAGTGG CTGC CCAAGCGCA            GTCGTTTACAAAACT  39 175
JTM80_RS18930 4638239 .. 4638255 -    -3  -3.91897   TTTTGTAGCCAGAAA              CCTTTG CTTGC CAAAAG              CACCAGGATTATTTG  54 245
JTM80_RS18925 4632110 .. 4632133 -    -3  -3.11569   TCATCTATGCAAAAC          GGCATCAGGT ATAA ACCCGGTGAC           TGGCGCTGATACACG  43 125
        surE 4628801 .. 4628815 -  -2.7  -3.60627   TGACCCTATTGTAAA               GGGGG AAAGA CCGCC               CGGCTGCATCCTTAA  49 448
JTM80_RS18905 NONE
JTM80_RS18900 NONE
JTM80_RS18895 NONE
JTM80_RS18890 NONE
JTM80_RS18885 4623936 .. 4623973 -  -5.5  -4.67353   CGATGCACTGAAAAA   TCCGCCCCCTGAACTGCT GGA AAAAGTCC-GGGAGCGGG   GATGTGCGATCGCCC  73 286
        rimI 4618382 .. 4618404 -  -2.6  -4.00756   GAGCGCACCAAAGAA           TGCAAGCGAA GAA TGCGATCGCA           CGCTTGCTGCTCCGA  55 52
JTM80_RS18855 4615634 .. 4615658 - -12.2  -4.87389   CAGCGCAAAAAGAAA          CTGGGTTACC CATCC GGCAACCCAG          CCCTCAACACAAGAC 100 146
        ilvC 4614405 .. 4614430 - -15.5   -5.4833   TGACCCAACAAAAAA         CCTGTCTGGCG ATCG CGCCAAACAGG          TCTTTCCAAGTCCTA 100 87
JTM80_RS18845 4612709 .. 4612725 -  -2.1  -4.08706   GGGTGATGATAGAAA              CCAGTTG CAG CATCAGG              ATGTAGCGCATAGGG  55 173
JTM80_RS18830 4609933 .. 4609950 -  -4.1  -2.87211   ATGGGGGTTTATAGA             CCAGCTA ACTT TAGCTGC              CAGGGTTCACGACAG  45 18
        tsaB 4609190 .. 4609220 - -11.8  -2.92038   GCGAAAACGAGGAGA       GGGAGTGCGGGAGC TAA GCTGCGACACTCCC       TTTTTTGTGCTTTTG  76 86
        crtA 4606767 .. 4606778 -  -2.2  -3.18383   ATTTGCAGTCATGAA                CGTG CTAT CACA                 AAAGGGACTATGGCT  44 33
JTM80_RS18810 4606026 .. 4606044 -  -3.1  -3.11619   GAACAAGGGAGCCAA             GAAGCGT CTCGC AGGCTTC             AGGAAACGGGAAACT  44 40
JTM80_RS18805 4605134 .. 4605168 - -13.8  -5.00616   TGTTGCGCTAAAAAA     TCCTGGATAAGAGC GCTTCTT ACTCTTATCCAGGA     TTCAAAGCTGCATCA 100 83
JTM80_RS18795 4603407 .. 4603419 -  -5.5  -3.54129   CACATTCTCGGCAAA                CTGCC CTT GACAG                ACTTCCAGGCCCGCT  56 43
JTM80_RS18790 4598288 .. 4598298 -  -8.2  -3.54741   GATGATTGGGCTAAA                 GCGG TAG CCGC                 GTCAGTGGCACGAAG  67 10
        modA NONE
        modB NONE
JTM80_RS18775 4595382 .. 4595398 -  -5.1  -3.28712   GGCTGGGTTGCACAA              CTGACGC TAA GCATCAA              ACTCAACAATACACA  53 83
        modA NONE
JTM80_RS18765 NONE
JTM80_RS18760 4592013 .. 4592032 -  -3.5  -3.33162   GAGGTGATGGCAGAA            CTGGGGA GGGCGA TCGCCAG             TTCTGCGGATGCAGA  47 511
JTM80_RS18745 4588347 .. 4588362 -  -5.4  -3.21593   GATTTCCTGACAACA              GACCTG GCAA CAGATC               GGTTTGGGGTTGGAT  53 52
JTM80_RS18740 4586598 .. 4586614 -  -2.2  -2.60512   CGCAACAGGAACGCA              GTGAGG AGCGA CATCAC              TCAGCTAGAAGGACA  39 26
JTM80_RS18735 NONE
JTM80_RS18730 NONE
JTM80_RS18725 4582687 .. 4582698 -  -2.2  -3.24925   ATGCGAGACCAGGAA                CACC TCAT GGTA                 GGGCTGCGCTGGCAC  44 128
JTM80_RS18705 NONE
JTM80_RS18700 NONE
JTM80_RS18695 NONE
JTM80_RS18690 NONE
JTM80_RS18685 4557208 .. 4557254 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 311
JTM80_RS18675 4555691 .. 4555704 -  -5.2  -3.05562   AGAAAGCCCTTAATA               CGGG TAAACT CCCG                GCGAGAGGAGCAGCC  51 6
JTM80_RS18665 4552171 .. 4552195 - -10.1  -4.19506   ATCGCAAGTCCAAAA          TCCAAAATCGA GAA TCGACCTTGGA          GGATCGAAAGCGATC  83 328
JTM80_RS18660 NONE
JTM80_RS18655 NONE
JTM80_RS18650 NONE
JTM80_RS18645 4547547 .. 4547583 -  -3.6  -3.72893   TACGGCTCCATCAAA   GGCGGCTGGCTAACG-GC AAA GCGCATC-GCCCGCTGCC   ACCCCTGGAGCGAAG  54 213
JTM80_RS18635 4546366 .. 4546376 -  -2.4  -3.53012   TTCCGCCGCCCTAAA                 CCTG CGA CGGG                 TCAATCCCCAATTCC  47 10
JTM80_RS18630 4545803 .. 4545816 -  -2.4  -2.87132   CTGGTCGCTCATAGA               GACT TGGTTG AGTC                GGGGTTGAGTCAGGA  41 35
JTM80_RS18625 4545083 .. 4545093 -  -3.2  -3.57263   AGCCCCAGGGGCAAA                 TAGC CCA GCCA                 TTCACAGAGCAGTTT  49 27
JTM80_RS18620 4543615 .. 4543625 -  -4.6  -2.71144   GAGTCGGCCCAAGCA                 GCCG GGT CAGC                 CCGCGTTACGCTCAG  44 21
JTM80_RS18615 4542993 .. 4543010 -  -5.5  -4.36914   TGCTGGGCTAGAAAA             GCTGACT CACC AGACAGC              GAAAACCGGGCAAGA  69 0
JTM80_RS18605 4541880 .. 4541898 -  -5.9  -3.85698   CGCCGCTGGGACAAA             GCCTGGA GCCGA TCCTGGC             GATCATGCACGAATG  61 453
JTM80_RS18590 4539975 .. 4540005 - -16.9  -4.36914   GGTGCTTGCAGAAAA       GGGCGATCGCCTT AATGG ATGGCGATCGCCC       GACACTCGTTTCCCA 100 158
JTM80_RS18585 4538867 .. 4538878 -  -5.8  -3.34962   TTCTATACGCTAGAA                CTGC ATCA GCAG                 GGCTTGTCACCCGCA  53 333
JTM80_RS18575 4535637 .. 4535647 -  -3.2  -3.96624   CAGTCGCAGTACAAA                 TCGC CTG GCAA                 AAGCAATCACGAAGC  56 114
        crcB NONE
        crcB NONE
JTM80_RS18560 4532150 .. 4532165 -  -3.2    -2.867   ATGAAGAGGACTATA              TCGAAG GTTC CCCCGA               ATTAGTTGTTGAAGT  42 416
JTM80_RS18550 4528981 .. 4529003 -  -6.3  -2.55544   GCACCAGCGAACTGA           CCTGCTG CAAGCCCAT CAGCAGG           CGCGTTGCATCGACA  49 288
JTM80_RS18545 4527248 .. 4527274 -  -9.6  -2.81564   CAAATCTACGCAAAT         CTTCATTTCGCT TTT AGCAAAATGAAA         TCCTTAAGAATTGAA  65 350
JTM80_RS18540 4520802 .. 4520818 -  -9.4   -2.7419   ACAGCACGCCAATCA              CAGCCC TTCCG GGGCTG              AATCTCTGGCTCTAG  62 37
JTM80_RS18535 4518872 .. 4518885 -  -3.7  -3.31461   CACTTAGGCTTACAA               GCCGG ACGA CAGGC                GATCGCGGTACAGGC  48 6
JTM80_RS18530 4517822 .. 4517840 -  -5.2  -4.08945   ACGACCCCGTGAAAA             GCTGGCTA GAT CAGCAAGC             AGGCAGCAGTGTTTC  64 331
JTM80_RS18495 4509095 .. 4509114 -  -5.8  -2.71791   AGGTGTTCGTGAAAG            GCGTTGAGA AAT TCTCAA-GC            TTTACTAGGTTAGCA  51 181
JTM80_RS18490 4508553 .. 4508596 -  -7.3  -3.09681   GAAAAGTCCAGTGAA TGGAACCAGAGAGCAACGC TGCGCC GCGCCGCCCGCTCGCCCCA TGCCTACACCGGGTC  54 407
JTM80_RS18470 4504816 .. 4504844 -  -6.8  -3.84266   ACAGTTTATACGAAA       GCCCCTTGAGT TTCAATGG ACTCA-GGGGC        TTTTGAATTTGACTG  67 187
JTM80_RS18460 4502530 .. 4502543 -  -5.9  -3.54741   GAGCATCCCGCGAAA               CGGGC GATC GCCCA                AATTCTCGACCAGGT  55 249
JTM80_RS18450 NONE
JTM80_RS18445 NONE
JTM80_RS18440 4497449 .. 4497479 -    -4  -4.07877   GGATGCCATAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  59 53
JTM80_RS18435 4496907 .. 4496925 -  -4.7  -3.61356   ATGAGTCATTGTAAA             GAAAAAA GTCAT TTTTTTC             GCGCAATCCAGCAGA  54 15
JTM80_RS18410 4491920 .. 4491934 -  -2.8  -3.68827   GAGTCACCATTCAAA               TCTACA TGG TGTTGA               TTGCCTATCTGATTC  52 270
JTM80_RS18400 4489032 .. 4489050 -  -5.2  -4.01137   TAGAGAAGTGACAAA             GAGACGGA CGC TCCATCAC             TCTGCAATGAAGATA  63 22
JTM80_RS18395 4487163 .. 4487176 -  -5.2  -3.72695   AGGTGTTGCACGAAA               GCGG GGGATT CCGC                TATCTGCGCGAAATC  58 432
JTM80_RS18375 4474784 .. 4474814 -  -8.2  -5.86332   TTAACGCAAAAAAAA       TCGAGGGCCGTCCC GCA GGAAACACCCTCGA       TGAGTCTAAACGAAG 100 92
JTM80_RS18370 NONE
JTM80_RS18365 4473189 .. 4473219 -  -4.6  -3.32844   GTCGGGAGTGTATAA      CGCCA-CGGCCCC CAACCC GGTGCGGATGGCG       GAATTTTGCCAAACG  51 328
JTM80_RS18340 NONE
JTM80_RS18335 4467313 .. 4467326 -  -2.3  -3.93369   TGAAGGTCAATGAAA               GCGCT GAAG AGGGC                GTATTGGCTCATCTG  53 275
JTM80_RS18325 4464700 .. 4464723 -  -4.4   -4.3953   TCGAAGGACAAGAAA          CCAGCCGGGC GATC GCCCATTTGG           CAACACCATCCTTTC  66 91
JTM80_RS18310 4463277 .. 4463287 -  -5.4  -4.35926   ATCGCAAATCCAAAA                 TCGA GGA TCGA                 TATTAGGGTGTTGCG  69 28
JTM80_RS18285 4458765 .. 4458779 -  -5.6  -2.78935   AGACCGCCCAGCAGA               TTCGCC AGT GGCGAT               CGCGCCTCCAGCAGC  47 132
JTM80_RS18275 4456391 .. 4456415 - -10.7   -4.5442   CTTGGAACGACAAAA          GAGACGCAGCT TCG AACCGCGCCTC          TTCTCAGAACTACAA  91 159
JTM80_RS18265 4452671 .. 4452681 -  -8.2  -3.25717   AGTAGATAGAACATA                 GGGG AAT CCCC                 CATTACTCTATGAGG  64 28
JTM80_RS18230 NONE
JTM80_RS18225 4441840 .. 4441865 -  -7.5  -2.80876   AACAACAGTTCAAAT         GGGGAGTTCAG ACCG CTGGACTCCCT          TTCTGTTTTCTAGTC  56 272
JTM80_RS18215 4440310 .. 4440321 -  -7.2  -3.23929   GAAACCACAGGAAGA                GGGC GATC GCCC                 GCCAAAGGCTCAGAT  61 382
JTM80_RS18210 NONE
JTM80_RS18205 NONE
JTM80_RS18200 NONE
JTM80_RS18195 4435497 .. 4435511 -  -3.5  -4.36914   TTCCCTTGCAGAAAA               CAACC TCTAC GGCTG               TGGGATGGCGCTCTG  64 428
JTM80_RS18175 4430702 .. 4430717 -  -3.2  -3.93353   AAACGAACAAAAAAG              GCGC TCTTTTCG GCGC               TTACGCCCAACTGTA  54 123
JTM80_RS18170 4429482 .. 4429496 -    -7  -2.52834   CATGCCACCATTAAC               GCGGCG CTT CGCCGA               TTTCAGCAGTCCGCT  50 195
JTM80_RS18160 4426730 .. 4426742 -  -9.1  -2.97825   ACGAAGAATACTACA                TCGGC AGC GCCGA                CTGGATGCCGCGTAA  59 285
JTM80_RS18150 4423818 .. 4423846 -  -4.5  -5.18995   AACATAACACAAAAA        TCGTGCCCGAC CCAATTC GTCAGACGCGA        TTTCACTTAAATCTA  80 133
JTM80_RS18145 4422193 .. 4422203 -  -2.4  -4.07568   GGCCGTGCCCCAAAA                 GCCG ATG CGGA                 TGGTGGTACAGGGCG  56 293
JTM80_RS18135 4420241 .. 4420252 -  -5.8  -4.57569   GCAGTTTGGTAAAAA                GCTG GCTT CAGC                 AACATTTGGCGTGGG  75 166
JTM80_RS18120 4418426 .. 4418439 -  -2.3  -2.68823   TCTCTCGCATAGAAC               CCTCC CGCA GCAGG                ATTACCAAGTCAGCC  39 177
JTM80_RS18115 NONE
JTM80_RS18110 4415547 .. 4415562 - -10.4  -2.60571   AAGGCTGGAACTAAC              GAGGGC GATC GCCCTC               TGGTTGTAGAGATTT  68 114
JTM80_RS18105 NONE
JTM80_RS18100 NONE
JTM80_RS18095 4413550 .. 4413565 -  -5.4  -3.31144   GTTGGACGGTCAGAA              GTCC-GC AGG GCAGGAC              GCAGGATTTTTGAAG  53 132
JTM80_RS18090 4412723 .. 4412747 - -10.8  -3.49232   GGTTGAAACACAACA          GGAACCCGAA GATGA TTCAGGTTCC          CTGAAGACTGGGATC  75 109
JTM80_RS18085 NONE
JTM80_RS18080 4409653 .. 4409674 -  -4.4  -4.57073   GACCTGGCGCAAAAA           GTGCTGGAC GGGCT GCCCAGC-C           TAGAGGATCTGGAGC  72 469
JTM80_RS18065 4407002 .. 4407012 -  -5.4  -3.22475   CCCAGTCTTACAAGA                 CTCA GGA TGAG                 AATTGACCATTGAGA  53 16
        pgsA NONE
JTM80_RS18055 4404270 .. 4404282 -  -3.3  -3.53811   CTCATCTCGCTTAAA                CTCGC CAA GCTAG                CGTCCCCGGCTCCGT  49 22
JTM80_RS18050 NONE
JTM80_RS18045 4402628 .. 4402654 -    -8  -3.65522   TATGCAGTTGAACAA         TTTCTCGCAGGC TGC GCCCACCAGAAA         TTGTCCAAAATTCAG  70 248
JTM80_RS18040 NONE
        lysS 4399975 .. 4399997 -    -4  -3.39327   GCGGGATATCGACAA           GCGCCTTTGG TTC CTAGAAGCGC           ACCTACAAACTTCGG  49 160
        hpsA NONE
JTM80_RS18010 4389575 .. 4389585 -  -8.2  -3.37975   ATGCATCAGGGACAA                 GGCG TGC CGCC                 CTGCTGGTGAAGCTG  65 5
JTM80_RS18005 NONE
JTM80_RS18000 4387658 .. 4387673 -  -3.2  -4.24404   AGCCAAATCTTAAAA              GACGAC TACG ATCGCC               TGCGGATTATCCTCA  60 86
JTM80_RS17980 4384345 .. 4384356 -  -2.2  -4.30416   ATTACCAATCCAAAA                TCCA AAAT CGGA                 AATCTCCCCTGCTAA  60 37
        pilM NONE
JTM80_RS17960 NONE
JTM80_RS17955 4378932 .. 4378942 -  -5.4  -3.33037   ATTCTAAAGGATTAA                 GTCT TTG AGAC                 AACAAAAGCAGGCAT  53 65
JTM80_RS17950 4376650 .. 4376670 -  -2.5  -3.90922   ACCCCCTCCAAACAA            GCTGAAAAC TCG GTATTCACC            GCTAGCGTCTCCCCC  53 27
JTM80_RS17945 NONE
JTM80_RS17940 4374551 .. 4374569 -  -2.2  -3.63922   ACGCTGGTCAAAACA             TCGGGCGA TCG CCTCCCGT             TCCTGCTGAGCCAGT  51 263
JTM80_RS17905 4365649 .. 4365671 -  -4.9  -3.98661   CAGATTCACCATAAA          GTGATCGCCG TATA CAGCGAT-AC           ATAGCGATCCTCTGC  61 84
JTM80_RS17900 4364105 .. 4364118 -  -2.3  -3.91897   TTCGCGATCTAGAAA               CGCAA ATTT TGGCG                GAGCTGTCGTCCTAT  53 420
JTM80_RS17875 4354593 .. 4354609 -  -5.7   -2.5655   TTCACCTAGACGAAG              CAGCCGC ACA GCGGGCG              ATCGCCCAGACCCAG  46 188
JTM80_RS17850 4349077 .. 4349088 -  -7.2  -3.51232   GTGCTGGGAAATGAA                GGGC GATC GCCC                 GGTTTCTCAGCCTGC  64 70
JTM80_RS17845 4347710 .. 4347720 -  -2.4  -3.28791   ATCGGCGGCGGACAA                 TCCC TGC GGGG                 CTATCGGCAAAATGC  44 335
JTM80_RS17830 4343933 .. 4343945 -  -4.7  -3.12521   TCCAGGAAAACTACA                TCGCG CAT CGCGT                CTTTCGCTATGACGG  47 230
JTM80_RS17795 4337982 .. 4337996 -  -4.2  -3.64703   CGCCTTCGAGCTAAA               GGTTCC CCT GGAACT               GCCCGACTTTGCCCT  54 439
JTM80_RS17785 4335587 .. 4335597 -  -4.6  -3.35522   TAATGGTGCTAAAGA                 CCGG AAC CCGA                 ACCGAATTTCTAACT  52 42
JTM80_RS17780 4333908 .. 4333924 -  -4.3  -3.67417   AGACCTAAGCTGAAA              GACCTAG TGA CGAGGCC              TAGCTGCGGCGGTTG  56 89
JTM80_RS17770 4331988 .. 4332012 -  -5.6  -3.06671   ATATGTACGCTAAGA          CCCGCGCCGA GGGCT TTGGCGCAGA          GGTGAAGCGGCGAAT  49 504
JTM80_RS17760 NONE
JTM80_RS17755 4327868 .. 4327887 -  -2.8  -4.18018   GCTGCCCAGCTAAAA            GCCGACCTA GAG CAGG-CGAC            AAAAGACCTTCTTCG  60 397
JTM80_RS17745 4325094 .. 4325115 -  -2.1  -4.18197   ATTTTTCACCCAAAA           TGCTGGGGG CGAT CGCCCAACC            CCCTTCCAGGAAATG  57 391
JTM80_RS17740 NONE
JTM80_RS17725 4318377 .. 4318404 -  -3.5  -2.73364   TTTGCATCCCAACTA       TCAGC-ACTG-GC AGTG GCTCAGCCGCTGA        GCCTGATTCGCAAAT  44 80
JTM80_RS17715 4317336 .. 4317373 - -15.7  -2.50252   AGCCTGACAACACAC   GCAGAGAGCCGATCCCA AGTT CAGAATCGACTCTCTGC    CACAACTCTAGTCCG  86 240
JTM80_RS17670 4310750 .. 4310777 -  -6.3  -5.44721   AGCATCCGAAAAAAA        GAGAAGCCAGC TTTCAC ACTGACTCCTC         CTGACCTAGAAACCC  95 58
JTM80_RS17665 4308814 .. 4308832 -  -2.2  -4.33755   AGGAATATCAAGAAA             CCCTGAAC AAG GCGCGGGG             AATGCTAGAGGCAAT  62 87
JTM80_RS17645 4303889 .. 4303923 -   -12   -5.2894   AAACATAAAACAAAA     GCCCTGAGTCACCCAC GCA GCGGGCAGCGCAGGGC     TTAAGATCTGGTCTT 100 55
JTM80_RS17640 4303327 .. 4303376 - -15.2  -4.55826   TCCAAAACAGCAAAA CCTCCATTCTCTATCGGGTTGA GCAATA TTAACCCGGCAGAAAATGGAGG CAGTACAGCAGTTCA 100 60
JTM80_RS17635 4302620 .. 4302638 - -10.2  -3.39787   TTAAATCATAGAATA             GCCTCCCG ACG CGGCAGGC             TGCTTGAAATTTAGA  75 346
JTM80_RS17630 4301990 .. 4302001 -  -7.2  -3.72893   CACTTTTTCACCAAA                CGGC CTGC GCCG                 CTCAAAGCGCAGAGG  67 272
JTM80_RS17625 4300080 .. 4300118 -  -9.6   -3.5627   AGACCAGTTCCCAAA   TGCAAATTCTCGGTGAGA TTT CCCCACCTCGAATCTGCA   TCTTGCATGAACTCT  74 124
JTM80_RS17620 4299335 .. 4299367 - -12.9  -4.21787   AAAAAACTTGTAAAA     GATGCGATCGC-CT TTCATG AGTGCGATCGCATC      TTTTCGCTTTCTCTG 100 105
JTM80_RS17590 4292959 .. 4292978 -  -7.9  -3.55444   TCCTCAGCCCCTAAA            GCCTACT CTCCGC AGTAGGC             AATCAAATCAATTTC  64 8
JTM80_RS17585 4291918 .. 4291928 -    -4    -3.441   GGAAGAGGGAAAAAG                 GAAA GAA TTTC                 GTTTTTCGTTTTTGC  50 49
JTM80_RS17580 4291036 .. 4291066 -  -9.8  -4.18018   CGGGGGCAGCGAAAA      CTGGGTCGCCTCC GAGAGT GGAGACGACC-AG       GTATATTGAATTTTC  83 399
JTM80_RS17575 4290591 .. 4290608 -  -7.7  -3.29511   CGTATGTTTTCAGAA             TCACGGC AAAG ACCGTGA              GGAATTTATACCCGT  61 207
JTM80_RS17560 4289003 .. 4289028 - -11.2  -2.71745   CCTCGAACAAGCAAG         GTCTCGGCTA CTGCCT CAGCCGAGAC          TTAAAGCTGTCTAAC  71 129
JTM80_RS17555 4287715 .. 4287731 -  -4.3  -3.29626   GAAGAGCTACATCAA              GAGGCAC TAG GCGCTTC              TTATCACGCAGGAGG  47 426
        asnS 4284198 .. 4284214 -  -4.3  -4.30978   TCTAAGCCAGGAAAA              GGCGCAT TTT ACGCGAC              ACCGCTGGGCGCAAT  65 445
JTM80_RS17505 4273249 .. 4273263 -  -2.7   -3.3164   AATTGATGCCGACAA               CGCCG CCAGC CTGCG               CCTGCACCAGCGCTT  44 210
JTM80_RS17495 4272228 .. 4272248 - -12.6  -2.90723   GCATCGGCAACCATA            GGACAGCG CCCCC CGCTGTCC            CAAGGTTTAGGCGAC  78 174
JTM80_RS17490 4270860 .. 4270878 -  -4.6  -3.10908   AAACCGATGAGTCAA             TGCACA GGGCTAG TGTGCA             AAGGTTATGCACAAT  48 225
JTM80_RS17485 4270108 .. 4270137 - -12.9  -3.23216   GTGCATGAGCAGCAA       GGTGCATGAGCCA AACG CAGCCCATGCACC        TTGTTATAGATTTAT  81 71
JTM80_RS17475 4268794 .. 4268818 - -13.5  -4.05714   ACCTTTAATCAGAAA          GGGTGGGACGC AGT GCGCCTCACCC          TTTTTAACTCGTTAA  93 113
JTM80_RS17465 4266542 .. 4266566 - -14.4   -5.0133   TATGGCCGCAAAAAA          CTGGTAGGTC ACGAA GACCTACCAG          CGAGTTCAAGCTTCA 100 106
JTM80_RS17460 4265524 .. 4265540 -  -3.7  -5.75342   CTCTCTCAAAAAAAA              CTCCCAA AAC TTGAAAG              CCCCAACAAATAAGG  93 291
JTM80_RS17455 4263538 .. 4263556 -  -3.8  -3.92602   CTAATAGCCCATAAA             CCGAACCA GTA TAGTTTGG             AAGCCTATCTGTAAT  57 117
JTM80_RS17450 4263346 .. 4263359 -  -3.1  -2.72204   GCAAAACTTAAAGAC               CCGTT ACAG AACAG                ACTTCGTTACAGAAA  41 124
JTM80_RS17445 4263087 .. 4263105 -  -6.6  -4.51743   GGACTACTAAACAAA             CTGCCTGC TAA GCAAGCTG             CATTCTAAGCAAGTT  76 77
JTM80_RS17440 4259891 .. 4259906 -  -6.2  -3.89346   CTTCCACGCGAGAAA              TCTTCT TTCC AGAAGA               CCCCGCTAAAAGAGG  64 102
         rrf 4259692 .. 4259722 - -13.3  -4.96501   GTTCAGAAAAACAAA      CACCCCCTCGGGTG ATTA CATCCGAGGGGG-G       TTGTATTATCGCCCT 100 37
JTM80_RS17420 4253116 .. 4253148 -  -2.8  -4.23213   CCCAGATGGAACAAA     GATTAC-TCAGCGCTG TAT CAGC-CAGATGCAATC     AGCGATCGCCCTATC  59 36
JTM80_RS17415 NONE
JTM80_RS17410 4250354 .. 4250369 -  -2.4  -4.29738   TTACATTGACGAAAA              CTGGAG CGAA CCCCTG               CGCGAAACCCGCATT  62 236
JTM80_RS17385 4245150 .. 4245170 -  -4.7  -5.56264   TGCAAAGATAAAAAA            CTGCACTCA CAC CGAATACAG            CCCGTGAAAAATCAC  91 374
        ptsP 4242294 .. 4242305 -  -2.2  -2.60079   CCAGTCGAGAATCTA                CGCGG CTT CCG-G                CAATTTTATTCGCAG  39 172
JTM80_RS17375 4240211 .. 4240237 - -10.8  -3.86897   TGCACCTTGCATAAA         GGTGGACAACGC GAT GCGCTGCCCATC         CTTATGTCTTCAGGG  82 65
        tsaD 4235786 .. 4235798 -  -3.3  -3.87075   ACGACCTGGTAGAAA                TCGAC GCA GGCGA                TACCTTTGCGTTTGA  55 446
JTM80_RS17340 4232420 .. 4232431 -  -3.6   -3.6608   ACTACCGCACCCAAA                CGAG CCAG CCCG                 TTGCCCTCAATTCGC  54 358
JTM80_RS17315 4227608 .. 4227625 -  -2.6  -3.08679   GGCTTTCATCCAAGA             CCTCCG AAAGAA CGTAGG              CGAGCAGGGGCGATG  42 180
        cobQ NONE
JTM80_RS17305 4225798 .. 4225816 -  -5.2  -2.87957   TAATCAGGAGAATTA             CCAGGTGG GAT CCACGTAG             AGGTTGATGGTGAGC  49 4
        folK NONE
JTM80_RS17295 4224374 .. 4224385 -  -2.2  -2.80816   TGCCCATCTACGAGA                CAGA GTTA CCTG                 GGCAGCGTGACCTAC  39 82
JTM80_RS17290 NONE
JTM80_RS17285 NONE
JTM80_RS17280 4220724 .. 4220760 - -18.9  -4.14739   TGACGCACTCTAAAA    CAAAAGGCTGTCAGGAG ATT CTCCCAACAGCCTTCTG    TAAAAGAAAAGAGAA 100 121
JTM80_RS17275 NONE
JTM80_RS17270 4217464 .. 4217478 -  -2.1  -3.28924   GATCGGGTGTCAGAA               GACTC GACCA GAATC               CTGGGGTGGAATCCT  44 50
JTM80_RS17265 4214112 .. 4214134 -  -2.7  -3.76125   TTAGGGGAATGCAAA          GCAGGGAAAA AGCG TATTCCC-GC           AATGCTTTGACCCTT  52 91
JTM80_RS17260 NONE
JTM80_RS17255 4212386 .. 4212417 -  -3.6  -2.83613   ACCAGAGATGAAGGA      CGTGATGCGAT-CGC TCG GCGCATCTCAGCTCG      AGATTTTTCAGAAAA  44 224
JTM80_RS17240 4209237 .. 4209261 - -12.9  -5.38047   TAGTGACATAAAAAA          GGGATGAAAGC ATC GCTCTCACCCC          CCGCAATCTCTAGGA 100 98
JTM80_RS17225 4206304 .. 4206325 -  -3.7  -2.89564   TGTTTAGTCTATATA           GCTT-GCAGG ATG CCTGGTAAGC           GGGCGGGAAATGCTG  45 112
JTM80_RS17215 4202183 .. 4202196 -  -5.3  -4.13767   TTCTCCACTGCAAAA               TTCTC CACT GAGAA                ATGCTCAATCTCAAC  66 65
JTM80_RS17195 4198568 .. 4198615 -  -5.4  -3.12351   CTGCTGGATAGCGAA GGGATTCTTCGGTATAACGGGG CGAT CGACGATAGCCCGCAGAATCCC GACGGGGTGCAGAAG  49 239
JTM80_RS17185 4197019 .. 4197039 -  -3.1  -3.79678   AATGCTCTACAACAA            GGCTCTACG TTC CAGAGTGCC            ATAAACGGGGCACGT  52 133
        ispG 4195517 .. 4195527 -  -3.2  -2.59079   AACAGAAGCATTAAC                 GAGA AAA TCCC                 TGTGTCAAAGTTCGC  40 135
JTM80_RS17175 4193728 .. 4193745 - -11.3  -3.16742   TTGAAGCGCCACGAA             GCGATCG CAGG CGATCGC              CCCTCCCTGCATTTT  74 393
JTM80_RS17155 NONE
JTM80_RS17150 4188422 .. 4188440 - -13.2  -3.55548   TAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  86 197
        cobA 4187291 .. 4187307 -  -4.3  -3.15056   ATCGGCAATTGAACA              CGCAACC AGG GAATGCG              GCGATCGCCCCCCTC  45 112
JTM80_RS17125 4183144 .. 4183157 -  -3.8  -3.69094   AACGCAGCAGGCAAA               CCAG TGGCAC CTGG                CAGGTGTGCTGTCGA  54 222
JTM80_RS17115 4181763 .. 4181806 - -11.7  -4.23758   AGTTTACATGCAAAA GCCGGGCGATCGCC-TCACC TGCGC GGTGAAAGCAAACGTCCGGC TACAAACTCGGCGGC  95 271
JTM80_RS17110 NONE
JTM80_RS17095 4176560 .. 4176585 - -13.3  -3.06341   AACATTTTCCAAAAC         GAACCAGGAGC GCAG GCCCCCGGTTC          TGGAATTCCCTAGCG  81 35
        mtnA 4175107 .. 4175133 -  -2.9  -4.15788   AACCGCTTTAATAAA         GCCCTCTGCCT GACAG ATGAAGAAGGC         CGCATCGAGATCGAA  60 269
JTM80_RS17080 4173509 .. 4173532 -    -6  -3.53444   CTATGGTCGGCGAAA          TGAAGCGATC CATC GACAGCTTCA           TGCGCGATTTGGAGG  58 190
JTM80_RS17065 NONE
        grpE NONE
        lpxD 4168707 .. 4168717 -  -2.4  -3.28924   TATTCTGCGTCAGAA                 CGGG GTT CGCG                 CCCAAATTGAGCGAG  44 188
JTM80_RS17045 4165328 .. 4165341 -  -2.3  -2.84962   GTATGACGAAAAGAT               GGACA TCTA CGCCC                GCCTGGGAGTGCTGT  39 413
JTM80_RS17030 NONE
JTM80_RS17025 4161696 .. 4161710 -  -5.8  -3.35813   CTTTACTTGAAGTAA               TTTACT TGA AGTAAA               TAAGCAAGTTTAGCC  57 12
JTM80_RS16995 4153850 .. 4153876 -    -5  -3.20227   GCGGAATCATCAAGA         TGCGATCTTCCA GTT TGGCGGAGCGCA         ACTTCTGCTGCCTGT  49 117
JTM80_RS16980 4149868 .. 4149880 -  -4.8   -3.1332   GAAGAGATTATGGAA                GGTG TCTGT CACC                ACTCCCTGAGAATTC  48 221
JTM80_RS16960 4144595 .. 4144611 -  -7.9    -3.484   TGCAGCAGACCATAA              GCCATCC TGA GGTTGGC              CACATTGCATTCTTA  62 85
JTM80_RS16955 4143139 .. 4143162 -  -2.4  -4.71186   ACTATGAAGAGAAAA          TAGCTGCA TTAAATCT TGCAGCTT           CAACTTAGTAGAGGC  65 65
JTM80_RS16945 4140652 .. 4140688 -  -5.2  -3.65199   AACTGCTGACTGAAA   GCGTGGGC-GA-TATTGC TCT GCAAGACTTTGCCCACGC   TTTCTTATGCGCTTA  56 181
JTM80_RS16920 4135844 .. 4135882 -  -6.1  -3.34589   GGAAGAGGAAAGAGA   GAAGAACGAAGAGGGAA GAGGT TTCGTTTTTCGTTCTTC   GTTTTTCGTTCTTCG  57 57
        mnmA 4133064 .. 4133075 -  -2.2  -3.39449   CGGCATTAATATCAA                GCTC ATGA AAGC                 GGGCGGGCTGAGTGA  46 266
JTM80_RS16895 4127388 .. 4127423 -  -8.3  -3.33009   GAAAAGTCCTCATAA    TCCTCAATCGCGCCGG ATTGG CCGG-GCGATCGCAGA    TCAGCCAACAAACTT  64 185
JTM80_RS16890 4126325 .. 4126335 -  -4.6   -3.6968   CTAGAAGCGGAACAA                 GCCG GGA CAGC                 AACCCCCGTGCGCGT  56 151
JTM80_RS16875 4123097 .. 4123123 - -15.2  -3.31461   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GTCCGCGAGAAA         TTGTCCAAACCCCAA  90 95
JTM80_RS16870 NONE
JTM80_RS16865 4121496 .. 4121512 -  -4.3  -3.01712   GCCGCCGCTGGAACA              GATAGCG AAG CGCAACC              GAAAGATTTACGACT  47 33
JTM80_RS16845 4117574 .. 4117588 -  -3.5  -3.90112   TCCGCCGGAATGAAA               CCGCT TCCCT AGCAG               TCTATTCATAAACAG  57 88
JTM80_RS16800 4105830 .. 4105841 -  -2.2  -4.47183   GAGCAGCTAAACAAA                GCAG CCCG CTAC                 CCAGCCCAACTGATT  62 5
JTM80_RS16795 NONE
JTM80_RS16790 4102255 .. 4102289 -  -7.3  -3.60296   CAGCGTCAGGTGAAA    TCGCTCGTAGATTCAGA TAT TCTGAAGC--CGAGCGA    TCGCCTTTGGAAGAT  60 181
JTM80_RS16750 4093183 .. 4093195 -  -3.3  -2.81476   AGCGATTTAAAACAT                CCAGC CCA GCCAG                GCGATGCCCAAAATG  41 4
JTM80_RS16745 NONE
JTM80_RS16740 4090060 .. 4090096 - -16.6  -3.04461   GAGTTAGTTGGAACA    TTCCCAGGCGCTACGC TGCTG GTGTAGCGCCTGGGAG    CCGGACTCAGAGTTG 100 211
JTM80_RS16725 4086911 .. 4086922 -  -2.2  -2.86271   GCGCCAGCAGAATGA                GCAT CCTA ACGC                 AGAAGCCAAGGAGAC  39 219
JTM80_RS16720 4085309 .. 4085319 -  -3.2  -2.71712   TGTCGTCGTCTAAAT                 CAAC CAT GCTG                 GATTCATGCTGCTTG  41 140
        yqeK 4084540 .. 4084559 -  -3.5  -3.48593   CAGGGTTTGATAGAA            CCGGGTT TGATAG AACCGGG             GATTCAAGACTGGCT  50 146
        rsfS 4083726 .. 4083753 -    -2  -3.36581   GAAACGGTGAACGAA        GTGC-GCTGAC TTCTCGC GTCATCCGCAC        TGAGTCTGGTTCCAA  46 301
JTM80_RS16705 NONE
JTM80_RS16700 4081893 .. 4081927 -  -8.4  -4.56736   AGCGAAGAATGAAAA     GTGGGTGGCTGATCGC TTG GCGATTGGCCACCTGC     TTTTTGTGGTTACGG  82 117
        topA 4076774 .. 4076789 -  -3.2  -3.53444   TTAGGCTTTTCTAAA              TGCCCA GCAT CAGGCA               TTTCCAGTCAACAGC  49 64
JTM80_RS16640 4062068 .. 4062078 -    -4  -2.72043   AATCCGCGCTTAAAT                 TTCA GGT TGAA                 CGCCCCACTCTGAAA  44 162
JTM80_RS16635 NONE
JTM80_RS16630 4058443 .. 4058469 -   -21  -3.28712   TTGGGTTTTGGACAA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TTGTCCAACCGCGTA 100 63
JTM80_RS16625 4057006 .. 4057016 -  -2.4  -3.85698   TCTGTTTCGCAGAAA                 CCTG AGG CTGG                 CGATTAAGGCCGGTT  53 223
JTM80_RS16605 NONE
JTM80_RS16600 4052588 .. 4052598 -  -2.4  -3.18912   CGACGGAGGCATTAA                 CCCC AGA GGCG                 GCGACGCGGCGATCC  44 11
JTM80_RS16595 4051630 .. 4051656 - -13.8  -3.30124   CTGGATTTTGGACAA         TTTCTCGCGGTC GCA GATCGCGAGAAA         TTGTCCAACTGCGTA  83 132
JTM80_RS16590 4049818 .. 4049853 -  -5.2  -4.03888   GACCTAGAACAACAA    GCCGCGGCGCAGGGTG TCCA CACCCTGTATCTGGGC     ACAGACGACGAACTG  64 254
JTM80_RS16575 NONE
JTM80_RS16570 4046983 .. 4047010 -  -4.2  -2.79098   TTTATTGACGAATCA        GGAGT-GAACC TGGCTTT GGCTCGACTCC        GGGCACGTGCCCCGA  43 474
JTM80_RS16535 4034286 .. 4034326 - -22.7  -3.02043   AATGCTTTTCTAAGA  GCGTGAATCGTTGGGTGGC ATC GCCGCCAAACGATTCACGC  AAGAGGTTCAATTTG 100 182
JTM80_RS16505 4026899 .. 4026910 -  -4.4  -2.73681   CAGGCAGTGCAATGA                TGCA GCCC TGCA                 ACGCTCAGCCGTTCC  45 42
JTM80_RS16495 4024156 .. 4024169 -  -3.7  -4.13561   CGCCCGCAAAAAACA               GCGGG CAAT CTCGC                GCGATCGCCGACGGG  61 445
JTM80_RS16490 4023479 .. 4023491 -  -4.7  -3.90112   GGCGTGCGAAGCAAA                CCCCG ACG CGGTG                ATGGAAGAATTGGTT  59 323
JTM80_RS16475 4021369 .. 4021391 -  -6.3  -3.10677   AACTAATCGACCCAA           TCCCGTG TGAATGAAG CACGGGA           TTTTTTTGTGCAAGA  53 175
JTM80_RS16460 4018065 .. 4018114 -  -4.7  -3.81146   GCTGCGAACCAATAA GCTGTGAACCGATACGCTGCGAA CCGA TACGCTGCGAACCGATACGCTGC GAACCGATACGCTGC  59 113
JTM80_RS16455 4017595 .. 4017609 -    -5  -4.36914   GCGTTCTTTAGAAAA               GCTCTT TAG AAAAGC               TCTTTAAAAGAGTCC  69 40
JTM80_RS16450 NONE
JTM80_RS16445 4014133 .. 4014185 -    -8  -3.36059   TAAGGGAGAAAGAGA GAAGAACGAAGAACGAAGAG GTTTCGTTTTTCA TTTTTCGTTCTTCGTTCTTC ATTTTTCCCGTCTCT  65 42
JTM80_RS16430 4011716 .. 4011728 -  -6.9  -4.16943   GGCTAGAGGTGAAAA                CCGCC AGC GGCGA                CTGGATTGCTGCCGA  71 331
JTM80_RS16410 4008558 .. 4008569 -  -3.6  -3.03124   GGCGATTTTGCAAGA                GAGC GATC GCCC                 TTTAGCCGACTATTC  45 141
JTM80_RS16390 4003786 .. 4003797 -  -3.6  -3.71745   GAAGTATGCAAAACA                CGCC TCAA GACG                 CTACTGCTGACCAAA  54 195
JTM80_RS16385 4002677 .. 4002721 -  -9.2  -2.76969   CAACCTAGTGCAAAT GGGC-AGCGGCGTGACGACCT ATTT AGAACGCCAAGCCGTTCGCCC GTAGAGCGTTCAGAA  62 119
JTM80_RS16370 3996990 .. 3997044 -  -5.2  -5.34555   TGACAGCAGAAAAAA TGAAGAAGGAAAAACGAAAAAGGAAA AAG CTTCGTTCTTCATTTTTCTTCCCTCT TCGTTCTTCTTTCTT  86 54
JTM80_RS16365 NONE
JTM80_RS16360 NONE
JTM80_RS16355 NONE
JTM80_RS16350 3993402 .. 3993441 - -16.4  -2.78216   GATTGGGAGTAATGA  TTGGGAGAGAGGGAGGGC GATC GCCCTCCCTCTCTCCTTC   CTTTAAGGGATAACG  91 73
JTM80_RS16340 NONE
JTM80_RS16335 NONE
JTM80_RS16330 3986000 .. 3986030 - -17.6  -3.29144   CGAGCCGCGCTAGAA       CCTGTGCGCCTTGC GTC GCAAGACGCGCAGG       ACTCCCAGCGTTGAT 100 240
JTM80_RS16325 3985144 .. 3985173 - -22.3  -4.30995   GTCGCTACAAAACAA       GAGTGGGGCGCTT GATT AAGCGCCCCACTC        AACTATGGCTATCCA 100 81
JTM80_RS16300 NONE
JTM80_RS16295 3975694 .. 3975713 -  -5.6  -3.72576   CGTTGCCGCAGTAAA            GCAGCAGT TGGG ACAGCCGC             TCTCTGAAAAGGTTG  58 393
JTM80_RS16270 3970982 .. 3971008 - -16.6  -3.01791   ATTTCGTTTTCAAGA         CTGCTGTGCGGC GAT GCTGCACAGCAG         TTTTTGTTGCGTTTC  95 85
JTM80_RS16250 3964631 .. 3964646 -  -3.2  -4.13225   AAAAAAACCGACAAA              CCTGGT GAAG ACAAGG               AGCGGATGTTCAAAA  60 363
JTM80_RS16240 NONE
JTM80_RS16235 3961039 .. 3961056 -  -4.7  -3.73042   GTTTCTAGGAAAATA             CCGGGGC GATC GCCCTAG              AGTTCGGATCTTACG  56 141
JTM80_RS16230 3959679 .. 3959714 - -13.4  -4.23647   AAATGACGCAACAAA    GGCCTG-GCTAGATCCC AAC GGCATCTAACGCAGGCC    AGAATAAGGACGAGC 100 123
JTM80_RS16200 3953455 .. 3953473 - -13.2  -2.73635   GAAACCGCCTTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGAATCTTG  79 250
        coaD NONE
JTM80_RS16190 3951970 .. 3951993 -  -5.3  -2.71447   AGGGATCAGAGATCA          GGGCTAG ACTTCAGTCG CTAGCCC           CAAGACTCAGCCCCA  48 59
JTM80_RS16180 3942498 .. 3942535 -  -4.7  -2.90345   AACCCGACAGTAAAT   GCCGCACAGCGCTGAGT CAAC AGTCAGCACAGCACGTC    GATATCTGGTATAAA  47 129
JTM80_RS16175 3940658 .. 3940671 -  -3.1  -4.36914   TGCCCTCCCACAAAA               CGACGC TAA GCGT-G               ACTTCCTATACAAGT  61 374
JTM80_RS16170 3937936 .. 3937954 -   -16  -5.49729   AATTAGGCAAAAAAA             GAGCGGCC AGC GGCCGCTC             CTCAGGAGAACTCTG 100 86
        glgP 3934924 .. 3934939 -  -2.5  -3.89501   GAACAGGGCGACAAA              CGGCT GATTCA AACCG               TGCGCGGCGTGGGCT  53 76
JTM80_RS16115 NONE
JTM80_RS16065 NONE
JTM80_RS16060 3913998 .. 3914008 -  -3.2    -3.551   CCTCAATGGACACAA                 TGGA CAC CCCA                 CTATCGCCCGCGAAG  49 256
JTM80_RS16035 NONE
JTM80_RS16030 3906348 .. 3906365 -  -6.3  -3.83226   AACCAGCCAGAACAA             TTCCTCA CTGC CGAGGAA              CTGTTGCAGAAGCTG  64 307
JTM80_RS16015 3901608 .. 3901622 -  -4.2  -2.78798   ATGCCTCACTGAAAT               GCCTCA TCG CAAGGC               CTCACCGCAATGCCT  45 49
JTM80_RS16010 3900389 .. 3900399 -  -3.2  -3.05463   ATCTGGGTTATCTAA                 GTAG CAG CCAC                 ACCGGAATGGTAAAC  44 7
JTM80_RS15995 3896757 .. 3896770 -  -2.3  -2.92613   CGCGATCTCAAATCA               GGCTT GGCC ATGCC                GTGTGGGGATTTGGA  41 71
JTM80_RS15990 3895291 .. 3895302 -  -2.2  -3.65199   AAGTTCTTATGGAAA                TCGA GCGT CCGA                 ATGCAAAACCGCTGA  51 396
JTM80_RS15980 3893785 .. 3893799 -  -2.1  -4.90296   AAAACTTTACAAAAA              GCACTC TCAA GAG-GC               GGATTATTGAGAATG  68 215
JTM80_RS15975 3891885 .. 3891906 -  -5.9  -2.82516   TTCTCGACGAGTAGA           TGACT-AGCC CCA GGCTCAGCCA           TGACGACGAAGCTAC  51 61
        rplS 3891309 .. 3891326 -  -3.5  -2.62263   AGGTTTTTGACAGGA             TTTACTA CAAC TAGCAAA              GCCTGTTTACCCAAG  43 114
JTM80_RS15965 3891157 .. 3891177 -  -6.7   -4.7416   CCAAAACCCTAAAAA            GCCCAGAGC GCT GCGCCGAGC            GGAGGCGACTGGATG  79 59
JTM80_RS15930 3881004 .. 3881033 -  -4.4  -3.06265   ACGGGATAAACCAGA      GATGA-GGG-GGCT TCTC AACCTCCCATCATC       CTATCATCCCCGCTT  48 43
JTM80_RS15925 3878142 .. 3878157 -  -4.6  -4.37886   GCATTTCCTACAAAA              CCGTCG CCCC CGAAGG               CAAACCTGGCGAACG  67 328
JTM80_RS15915 3876599 .. 3876610 -  -4.4  -2.78816   TGACCCTTGATCACA                GACT CGCC AGTC                 GCATCAGCGCACTCT  45 9
        rbsK 3875532 .. 3875560 -  -5.1  -4.56597   TCGGGCGCTGAAAAA        CCTCGCCCCTCAG AAA CCGGGCAGCGAGA        CCGATCGCGCCTGCA  71 6
        guaD 3873955 .. 3873970 -  -6.8  -3.37522   ATTTTATGTAACCAA              CAGGCA TTTT TGCCCG               AATGCGACGAAAACC  60 52
JTM80_RS15895 3870505 .. 3870526 -  -2.9  -4.17316   AGCTCCTCAAAAGAA           TGTGGCTAG AGAT CTAGACACT            TAATCTGTGAATTTA  59 234
        aqpZ 3869624 .. 3869646 - -13.4  -4.35524   CTTTCAAACGTAAAA           TGCCCGGAGC CAG GCCCCAGGCA           TTTGTCTTGAAGGTG 100 89
JTM80_RS15885 3867716 .. 3867726 -  -6.8  -3.10732   AGAGGAATTTCAAGA                 CCTG ACC CAGG                 TTCCAGCGGTGGATG  54 234
JTM80_RS15875 3864814 .. 3864854 -    -7  -4.57341   AATCTGCTTGAAAAA GAAGGCATGG-CG-CGCG CTTACTT CACGACAACCATGCCTTC TCTAGAAACACTTTT  76 101
JTM80_RS15870 3861779 .. 3861822 - -10.3  -5.00895   CCGAGGACAGAAAAA CGGACCTCCACAAGCTTCC ACTTCA GGAAGCTCGGAAAGACCCG ATTCGTAGAACTGTC 100 128
JTM80_RS15865 3860426 .. 3860440 -  -2.1  -4.90296   AAAACTTTACAAAAA              GCACTC TCAA GAG-GC               GGATTATTGAGAATG  68 263
JTM80_RS15850 3859191 .. 3859203 -  -3.3   -2.8207   GCAAATCTTAAGAAG                CCTGA AAC TCTGG                GCATGTGTGGCTTTG  41 120
JTM80_RS15845 3858831 .. 3858877 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 212
JTM80_RS15810 3852889 .. 3852909 -  -2.5  -3.51032   AGGCTTGAAGGAGAA            CCAGCAC AGCAATA GCGCTGA            GACCGCCCCACTAAT  47 36
JTM80_RS15805 3852085 .. 3852106 -  -6.5  -4.12902   CAATGACCTGTAAAA           GACTTGAGG GAAC CCACAAGCC            TTCTCAAGTCTTGTG  71 148
JTM80_RS15765 3845103 .. 3845116 -  -2.3  -4.56597   GCGCCTTGCTAAAAA               CCAAG CCTC CGTGG                TGAAATTAAGCCTCC  62 31
JTM80_RS15760 NONE
         era 3842377 .. 3842390 -  -3.8  -3.54676   ATCCAGTTAAACGAA               GCGA TCGCCC TCGC                CGCACTCCGCGCATG  51 379
        ruvB 3840571 .. 3840591 -  -3.9  -3.90286   GATGAGAAAGCTAAA            CGGCTCGTC TTG GACAACCCA            GCGGTTTTTGCAGTT  57 191
JTM80_RS15735 3839125 .. 3839135 -  -3.2  -2.58249   GAGAGGGTTCAGAAG                 CCAG AAA CTAG                 GATTTACTGGGTTTA  40 83
JTM80_RS15730 3837754 .. 3837764 -  -5.4  -3.08813   GGCGATCGCAATAGA                 GTCT CTC AGAC                 GGCTCGAAGGATTAT  51 187
JTM80_RS15725 3836174 .. 3836188 -  -2.1  -2.65298   GGGATTTATTACAAC               GCCTT CTTCC AAGAC               AATGACAGCTTGATT  38 495
JTM80_RS15715 NONE
JTM80_RS15710 NONE
JTM80_RS15705 3834166 .. 3834178 -  -4.8   -3.1332   GAAGAGATTATGGAA                GGTG TCTGT CACC                ACTCCCTGAGAATTC  48 221
JTM80_RS15700 3833395 .. 3833407 -  -3.3   -3.8647   ATCCATCAGATCAAA                CAGGG CAT CTCTG                GCGTTTCCCAAGCTG  54 134
JTM80_RS15690 3830763 .. 3830781 -  -9.6  -3.40566   ACACCAGATTTAGAA             TCGAGGAA AAG CTCCTCGA             CTCGAAAGCGGAGAG  72 493
        leuC NONE
JTM80_RS15675 NONE
JTM80_RS15670 NONE
JTM80_RS15665 3827337 .. 3827349 -  -3.3  -4.87665   GCTGAGGCAGAAAAA                CAGCG GGC CGATG                CAGCCGAGGCAGAAC  76 92
        leuD 3825722 .. 3825754 -  -7.1  -4.85782   CCCTCCAAAAAGAAA     TCCCCCAAAACTCA ATCGCG TGAGCCT-GGGGGA      ATGTTGAATCAGGGT  82 159
JTM80_RS15630 3819151 .. 3819163 -  -4.7  -2.59742   GTGAATCGGGAGAAT                TGCGC TTT GCGCC                GATCGCCGTTCGGGG  44 154
JTM80_RS15620 3816964 .. 3816976 -  -5.5  -3.58905   ACCCTGTAGATAGAA                CCGCT ACG AGCAG                AACCGCCTGGGCAGA  56 57
JTM80_RS15610 3815117 .. 3815127 -  -3.2  -3.73936   AAACCCCAGCAAGAA                 CCTC AAA GAAG                 ACTCAAAGAAAACGC  52 130
JTM80_RS15605 3814626 .. 3814656 -  -8.2  -3.46914   AGCACTCAGCAAATA       GGGAAGCGCCCCGT CAT AGGCAGCACTTCCC       ACCTTTGCTCAGCAA  65 56
JTM80_RS15580 3807326 .. 3807356 -  -6.1  -3.87815   GGCCAGGTTTACAAA      GCGTAACGATTGCC GGAA GGCGATCGCC-CGC       ACCCCATGCCCTCTT  64 62
        gyrB 3799750 .. 3799762 -  -3.3  -4.20932   AAGACGGAGTGAAAA                CTAGC TTG GCTGG                GGAAGGCTATTCAGA  59 204
JTM80_RS15545 3798625 .. 3798637 -  -4.8  -3.53012   GCTGCTCCGGGCAAA                GCCA TAAGC TGGC                AAAGCCATAAGCTGA  54 71
JTM80_RS15515 3792977 .. 3792987 -  -5.4  -2.73124   GGCTATTGCGGAAAG                 GGTT TGA AACC                 TCCGTGCTGCTCTAT  47 491
        pruA 3787414 .. 3787443 - -13.7  -4.42325   AGATAGATAAAAGAA       CTGCCGGAATATG GTGG CATATCCCGGCAA        TGAGGAGACTGCTAC 100 37
JTM80_RS15495 3786632 .. 3786651 -  -4.9   -4.2679   CAAGTTTTATCAAAA            CCTGGGG GGCGAT CGCCAGG             GGCATCGCTTTTATC  67 399
JTM80_RS15485 3783895 .. 3783909 -  -3.5  -4.18494   CAGCTTTATCTAAAA               CAGCG GGAGG CACTG               GGCTTTCCCCTCCTG  60 87
        rplI 3782288 .. 3782313 -   -12  -5.88061   AAAAAATCAAAAAAA         TACTCTGCGA CTATTC TCGCAGAGTA          CTCATGTACTGTCCG 100 58
JTM80_RS15470 NONE
JTM80_RS15465 NONE
JTM80_RS15460 3777983 .. 3777993 -  -5.4  -3.04398   CGCTCTGCCTAAAAG                 GTTG GAG CAAC                 GCTCAGAGAGCCGTC  51 83
JTM80_RS15455 3775809 .. 3775829 -  -2.5  -3.77014   ACAAAACTAGCTAAA            CCGATAAAG TGA CACTATCGA            TCTCGGTTTTGTCCT  50 337
JTM80_RS15450 3773623 .. 3773642 -    -5  -2.62613   CCCGACTTTAAAGAT            TCGACCAA AAAA TCGGTCAA             GCTCTATTCTATCGA  47 148
        secG 3773120 .. 3773143 -  -3.9  -3.54424   GTCGATCTGGTTAAA          CTGGAGA GCCATGATCT TCTCCAG           GATTGCAATAGGATA  52 186
JTM80_RS15440 NONE
JTM80_RS15435 3770991 .. 3771001 -  -6.8  -3.64822   ATTCCCGTAGGGAAA                 GTGC GCC GCAC                 CGCTTGCGCGAACGC  63 358
        hisH 3768990 .. 3769011 -  -5.7  -5.40072   TGGTCGGCAAAAAAA           TAGGGGGTC TGTT GCCCCCCGA            TCTCCAGTTTGGGTT  95 73
        rsmD 3768160 .. 3768178 - -13.2  -2.72461   GAAGTGGCTCGAAAG             TCCCCCTT ATC AAGGGGGA             TTCAGGGGGATCTTT  79 237
JTM80_RS15410 3767054 .. 3767066 -  -4.1  -3.83561   CTTGCGGAAAAAAAT                TGAGT TTG ACCCA                GCAACGCCGAGCTTT  57 145
JTM80_RS15400 NONE
JTM80_RS15395 3763023 .. 3763039 -  -6.5  -4.08064   AACCGTGTTTGAAAA              CCGCATG GGC CATGTGG              CCGAGCTAAACCGCA  66 408
JTM80_RS15385 3761462 .. 3761493 -   -16  -3.39429   AAGAATTCCCAAAGA      GAATGGCTAGCAGC AATC GCCACTAGCCATTC       TTCATCCATGCGGAA 100 34
JTM80_RS15380 3760237 .. 3760251 -  -7.8  -3.46982   CTCACATCAACAAGA               GCTACG GTA CGCAGC               GTCTCAAGCGTTTAT  61 184
        lpdA NONE
        trpC 3756996 .. 3757011 -  -3.9  -4.30885   AAAAGATACGGAAAA              GCGCC TCGTCC AGCGC               GGGTCGGAGCGAGTC  64 244
JTM80_RS15360 3756378 .. 3756405 -  -9.2  -3.15579   TCAAGCCTGTATCAA        GTCGTTCAGGCA AATT TACCTGAACGAA         ACTGCTCTAAGAGAT  65 310
JTM80_RS15355 NONE
JTM80_RS15350 3753776 .. 3753813 -  -4.2  -3.06583   ACAATACTGGCAACA   GTGGCATGAACAAG GCTTGTCGAT CTTTTTCCTGCCAC    CGTACAGCTTCCTGC  45 274
JTM80_RS15315 3743159 .. 3743190 -  -6.6  -3.02632   CAATTTCATAAATGA      GCG-TGAAGCGGG CCGCTTT CCCGGTTCAGCGC      TTGGCTCAACCCGTC  54 289
       ftsH3 3741169 .. 3741193 - -12.1   -4.4767   TGAGCCACGACAAAA          GGCGCACCCCC AGC AGGAATGCGCC          TTCTTTGGGTTTGAA 100 58
JTM80_RS15300 3738968 .. 3738978 -  -6.8  -4.62471   CGCAACCTTGAAAAA                 CCGA AAA TCGG                 GATTAGAAAAACCAG  79 119
JTM80_RS15295 3737020 .. 3737033 -  -3.1  -2.95884   CCACTAATTCAGACA               GCTAC AGAG ATAGC                TTACGGAGATAGCTC  42 40
JTM80_RS15290 3736035 .. 3736061 - -16.6  -2.80113   CAGTAGTGGACGACA         CCGCCAACAACC TGC GGCCGTTGGCGG         GCTACCTGATGGGCC  91 114
JTM80_RS15285 NONE
JTM80_RS15280 NONE
JTM80_RS15275 3730523 .. 3730535 -  -3.3   -3.8647   ATCCATCAGATCAAA                CAGGG CAT CTCTG                GCGTTTCCCAAGCTG  54 280
JTM80_RS15255 3723695 .. 3723735 -  -5.3  -4.77157   GCAATGCACTAAAAA  GTGTGAATCCCCGCAAGGT TTT ACCCAGCAGGGATTCTAAA  TCAGAGACAAAGATG  76 67
JTM80_RS15230 3716519 .. 3716529 -  -2.4  -3.38314   TCTAATTTCCAAACA                 CCTC TGC GGGG                 TCGGCCGATTGCACC  46 1
JTM80_RS15225 3715927 .. 3715939 -  -3.3   -3.6914   AACGGGAATAGACAA                CTGGC GCG GCTAG                TAGCGGGTGCCGCGC  52 22
JTM80_RS15205 3712265 .. 3712296 -  -7.9  -4.18018   CGGGGGCAGCGAAAA      CTGGGTCGCCTCC GAGAAT GGGGACGACCAAG       TGTATTGAATTGTCA  74 171
JTM80_RS15200 3711808 .. 3711855 -   -17  -3.40305   GATAGAAAGAACAGA TCCTGA-ACCCTGTGCCGCCCGC TGC GCAGGCGGCACAGGGTCTTTGGG TTTTATATTTATTAA 100 189
JTM80_RS15170 3703499 .. 3703513 -  -4.9  -4.64657   TCAAAGCGGGAAAAA               CCCGA AGGAA CCGGG               ATCTATAACCCGTGC  72 406
JTM80_RS15135 3695540 .. 3695550 -  -5.4   -3.0682   CCTAGGAGATAGAGA                 TAGG GAG CCTA                 TAGCTAGCCGCTCAC  51 49
JTM80_RS15130 NONE
JTM80_RS15125 NONE
JTM80_RS15120 3691668 .. 3691683 -  -6.1  -3.75015   ACAATCCGGAGCAAA              CAGCG GTGGAT CGCTG               CGACCCAGACGGACT  61 505
JTM80_RS15105 3687774 .. 3687828 - -21.1  -3.54424   TTTGATCCCCCTAAA TCCCCCTTGAT-CAAGGGGGACTT TTCCCCCT AAATCCCCCTCGGATCAAGGGGGA CTTTGAGGCTTGCTT 100 164
JTM80_RS15100 3686478 .. 3686492 -  -5.7  -2.64765   CAACCAGACAATCGA               CACCA GATGT TGGTG               AAGAAACTGCGAACC  50 201
JTM80_RS15080 3681605 .. 3681621 -  -5.8  -2.58663   ATTCAGGTGGATAAT              GCCGCA GCCCA TACGGC              TCAGACCCTGACGAT  50 175
JTM80_RS15045 3674304 .. 3674324 -  -5.4  -3.69455   AGAAAAATCCCCAAA            CCCGCTTT ACGAA AAACCGGG            CATTCACTCGAACCA  59 257
JTM80_RS15040 NONE
        plsY 3671981 .. 3671991 -  -5.4  -4.35926   ATCGCAAATCTAAAA                 TCGA GAA TCGA                 CACGAGACTGCTTGG  69 250
JTM80_RS15030 3671151 .. 3671184 -  -8.9  -2.82933   GTTGAATTGAGCAGA     GCGAGATCTGCTGACC GTG GG-CTGCAAATCTCAC     TCTATGACGCAGTAT  62 90
        hydA 3669112 .. 3669123 -  -7.2  -3.14344   GATGTGCGTTACCAA                GCGC TTCA GCGC                 CTCGAAGAAGACCGT  54 413
JTM80_RS15015 3667230 .. 3667282 -  -9.9  -4.72272   TGCGCCTACCAAAAA GGCTTG-CTCTGCACAACGCTTGC GTCATG GATTGCGTCATGCAGAGTCAAGCC TTTACCTTCCTAGAC 100 42
JTM80_RS14995 3658459 .. 3658477 - -13.2  -2.74461   GAGCCACTCCGAAAG             TCCCCCTT ACC AAGGGGGA             TTTAGGGGGGTCTTG  79 151
JTM80_RS14990 NONE
JTM80_RS14985 NONE
JTM80_RS14980 NONE
JTM80_RS14975 3652346 .. 3652359 -  -3.9  -3.23975   AGGTTGGAAAAATTA               GTTAA CAAG TTAAC                ACTGGCTCTTTCTAG  48 76
JTM80_RS14970 3651754 .. 3651767 -  -3.8  -2.78438   CATCACAGGGGAAAG               GCGA GGTAGT TCGC                AGAAACGAACGCAAC  44 69
JTM80_RS14965 NONE
JTM80_RS14960 NONE
JTM80_RS14955 NONE
JTM80_RS14950 3648040 .. 3648080 - -10.4  -3.94868   GAGAATAAAGTGAAA  CGGCTTCAGGTGGGGATA TCTAG CATTCCTGCCTGAAGCCG  TTAAACTCTGTAAGT  82 291
JTM80_RS14925 3638990 .. 3639003 -  -3.7  -3.53012   TTGGGCTGGGGCAAA               CCCGC TTGG GCTGG                TCGTCTGCCGAAACC  51 327
JTM80_RS14915 3637179 .. 3637190 -  -4.4  -5.00616   TTGCTCCCCAAAAAA                TCAG CAGC CTGA                 TGAACGAGGCAAGTG  80 254
JTM80_RS14895 NONE
JTM80_RS14890 NONE
JTM80_RS14885 NONE
JTM80_RS14880 NONE
JTM80_RS14875 NONE
JTM80_RS14870 NONE
JTM80_RS14865 3608070 .. 3608084 -  -2.1  -2.65993   ATGATAGGGACAGGA              CTTCGC ACTT GCGA-G               AAGTTTTTGGGTTTT  39 87
JTM80_RS14860 3607319 .. 3607337 - -13.2  -3.55548   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  86 49
        csx3 NONE
JTM80_RS14850 3605748 .. 3605770 -  -6.1  -4.10657   GCAGACTGCCCAAAA           GCCGGGGAG TTCGT CACCCCTGC           GATCGCCCGCCAACA  69 437
JTM80_RS14840 NONE
JTM80_RS14835 3603430 .. 3603457 -  -4.8  -4.13767   TGGGTTATTCCAAAA        GACCTGCACAGA AAGA CCTGTACAAGGC         GAGATCCGCCGTGCA  63 83
JTM80_RS14830 3600652 .. 3600665 -  -4.5  -5.02074   GTAGCGTCGAAAAAA               GCTGCG TCC CGC-GC               TTCATCGACCCGTGG  80 524
JTM80_RS14810 3595554 .. 3595564 -  -2.4  -3.54181   ATTTGAAAATATTAA                 CCCC AAG GGTG                 ATGCTGAGGGCGTTT  47 54
JTM80_RS14805 NONE
JTM80_RS14800 3591349 .. 3591360 -  -5.8  -2.75769   GTTGTAAATGATAAG                TGCG GTAT CGCA                 TATTACTGCCTAAAC  51 35
JTM80_RS14795 3590379 .. 3590395 -    -5  -2.69468   CAGCGTCATACATTA              CGCCCG CGCAT CGGTCG              CGATTATAACCCAGG  47 131
JTM80_RS14790 3589946 .. 3589964 -  -3.1  -4.54477   CCAAAATCCAGAAAA            CCGATCGC AAGT GCG-TCAG             TCCTGAAAGCAAAGT  64 71
        cobM 3588781 .. 3588806 - -10.4  -5.23292   TGACAGAAAAGAAAA         GAGCAGACGG AGCGCA CCGCCTGCCC          TTCAGGATCACTACT 100 186
JTM80_RS14770 NONE
JTM80_RS14765 3579825 .. 3579844 -  -2.2   -3.6715   TCACTTAATCTGAAA            TTATGTGA AGCC TAACATAA             AGCTAAAGCAGGTGT  50 329
JTM80_RS14760 3579164 .. 3579188 -  -5.5  -3.61517   AGCCCCCCTTAACAA          GGGGGGAACCG AGC CGAGCCACCCC          GGAAGTCCCCCTTTT  56 189
JTM80_RS14750 3576607 .. 3576633 -  -7.8  -4.05446   TTTGTCAACCAGAAA         GCCTACCCCGCC CGA GGCCGGGTTCGC         CGATTGAAGAGTTTG  71 256
JTM80_RS14740 NONE
JTM80_RS14735 3571979 .. 3572018 -    -7  -3.92869   TGACCTATGCAGAAA  TGCCCCCAG-ACCTGAAGC ATC GCATCAGTCACCGGGGGCT  TGCCTTTGCGGCGCT  66 117
JTM80_RS14725 NONE
JTM80_RS14720 3570342 .. 3570369 -  -4.8  -4.46656   GGTAGAAGACCAAAA        CCCCAAAGACCCA ACT CAGGTCAT-GGGG        CGCACTCGCGGCAAC  70 157
JTM80_RS14710 3566869 .. 3566897 -    -3  -4.54026   TGGGAAAGAAAACAA       CCGGGAAGACCAG CTAA CGGGTCA-CCCGA        AACAGGCCAAGTACC  64 204
JTM80_RS14705 3564143 .. 3564174 -  -8.1  -3.53012   CCCTGTTCGCCGAAA      CGCCAG-CAGAG TATTTGCCG CTCTGTCTGGCG      CTTTACTGCTTTTTG  62 476
        holA 3560363 .. 3560376 -  -3.1  -2.77344   GGAGTTTTGAACAAG               CCTGT AAAC ACAAG                GAAGAATGGTTAATG  41 190
JTM80_RS14685 NONE
JTM80_RS14680 3559326 .. 3559337 -  -2.2  -4.20875   TACCAAAAAACACAA                GACGC ATG GCG-C                AAACCAGAGAAGGGG  57 264
JTM80_RS14675 3558297 .. 3558307 -  -2.4  -2.98823   GTGGTCGGATAGATA                 GTCG GAT CGTC                 GGGGTCAGCGCTGGG  41 43
JTM80_RS14660 3554451 .. 3554461 -  -2.4  -3.70902   CTCCGGACATGTAAA                 CCAG GAT CGGG                 GGCAGACTGTTGGAA  50 165
JTM80_RS14655 NONE
JTM80_RS14650 NONE
JTM80_RS14645 NONE
        ctaD 3550447 .. 3550472 -  -6.1  -3.77196   GTATGAGCCAGTAAA         TAGGCTAGTCC ACGC AGCCCAGCCTA          GCCCTCTTTGAGAGC  62 23
JTM80_RS14635 3549736 .. 3549763 -  -7.7  -2.52543   ATGGGTCTTAATGGA        TGCGATATCCG TTCCTT CGGACATCGCC         AAAGCATCACTGCCA  55 32
JTM80_RS14630 3547681 .. 3547691 -  -4.6  -3.28712   CCGCGCTGCCCACAA                 GGGC TAC ACCC                 AGATTAGTCCTGGCA  49 482
        menD 3543823 .. 3543833 -  -6.8  -3.53091   ATGGGGCTTCGGAAA                 GCGA GAT TCGC                 GATCGCATTCTGAAG  60 257
JTM80_RS14595 3538519 .. 3538537 -  -6.6  -3.38201   CAACATCGCTAAACA             CACCCTCG ACC CGCAGGTG             GCGCTGGGCGACCTG  56 241
JTM80_RS14565 3530492 .. 3530504 -  -4.7  -2.65112   AATGGAGCCAGACCA                GGCCC AGC GGGCG                GCCGACTATGTAGCA  43 330
JTM80_RS14555 3529453 .. 3529465 -  -3.3  -2.72344   CTCTACCCGCAACTA                CAGCC CAG GGTTG                ACCAAAAGCTGCGAT  41 10
JTM80_RS14550 3529124 .. 3529144 -  -6.7  -2.90901   ATAGGCGCAATCATA            GGCGCGATC ACC GAACCCGCC            TGCCTTCCCAAAACC  54 47
JTM80_RS14540 3525859 .. 3525916 - -15.7  -4.56597   GGTTTGTTGCAAAAA GGGCGATCGCAAAACCCGTC-CTTCTCC ATC GAAAAAGAGGTGGATTGTGCGATCGCCC TTGACACCAGAACCA 100 122
JTM80_RS14535 3524559 .. 3524571 -  -4.9  -4.40333   TTCAAAGAATACAAA                TTTGA AAC TCAAA                TTCCGGCGGCGCGTG  66 390
        sigC 3522470 .. 3522494 - -11.5    -3.786   CTATAAAACGCGAAA          GTGCATCCAAC TAG GTCAGATGCAC          TGTTCAATGGTTTGG  82 79
JTM80_RS14525 NONE
JTM80_RS14520 3520076 .. 3520096 -  -2.5  -3.55761   CACCCAGGTCGGAAA            TTCCCCG TTGAAGG CTGGGAA            TCTGTAATCAAGGTT  47 60
JTM80_RS14515 3519645 .. 3519682 -  -4.7  -3.92373   GAGCGCACGCAGAAA   CGCCGCCCCGACCTT TGGCAGGC ATGGCAGGAGCGGCA    AAAGTCTTTCCCCAA  59 172
JTM80_RS14505 3517252 .. 3517269 -  -6.2  -2.88663   ACTCATTGGGATAGA             CCCGGA GATCAA CCCGGG              GAGCAATCTTGAGGA  52 138
        cphA 3514130 .. 3514141 -  -2.2  -3.53343   AATCCCGTCGTCAAA                CCGA TTAG TCAG                 CTTAAACTGGCACCA  47 180
JTM80_RS14490 3513162 .. 3513180 -  -3.9  -3.84284   CCAAAACCCAGCAAA            CTTATCGC AAGT GCG-TAAG             TCCGTACGAATTCCA  57 42
JTM80_RS14475 3505498 .. 3505523 -  -4.6  -4.62471   TGCAATTTGCAAAAA         CGGCAGCCAT GCAAAA ACGGCAGCCA          TCGAGCACGTCTAGC  70 36
JTM80_RS14465 3502368 .. 3502384 -  -3.7   -4.7329   AAAACCAGTCAAAAA              CCAGT CTGGATC ACTGG              ATTTTTCTAACTTGA  68 195
JTM80_RS14460 3501336 .. 3501348 -  -3.3  -3.91488   AATCCCTGTAAAGAA                GACGG ATG CGGTC                TGATGGTGGCGATCG  54 218
JTM80_RS14455 3499865 .. 3499878 -  -5.3  -3.83756   AAACTACAAGCTAAA               TACCT CGAA AGGTA                CCTTGGTTAACTGCT  61 292
        pstC NONE
        pstA 3497867 .. 3497890 -  -4.6  -3.36273   TTGGGGCAATAGCAA          CTTGGCGATCG CCC CCATC-CCAAG          AACCTAAAACTTGCG  52 29
        pstB 3496714 .. 3496727 -  -8.1   -3.9951   AAAGACGCAAAAAGA               TGGGC GATC GCCCA                GGTCGAGTCATCAAA  74 303
JTM80_RS14430 NONE
JTM80_RS14425 3491886 .. 3491912 -   -21  -3.31322   TTGAATTTTGGACAA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 45
        bioD NONE
JTM80_RS14395 NONE
JTM80_RS14390 3483540 .. 3483588 -  -6.1  -5.14477   GAGAGATGGAAAAAA CGAAAAACGAAGAGCGAAAAATG AAA CGTTTTTCCCTTTCCGTTCTTCC TTCTTCCTTCTTCCC  86 66
JTM80_RS14385 3481989 .. 3482041 -   -13  -3.25472   ATAGGGGGAAAGAGA GAAGAGAGAAGAACGAAG-AGGGAA GAGG TTCCGTTCTTCGTTCTTCGTTCTTC ATTCTTCATTCTTCA  81 143
JTM80_RS14380 3481106 .. 3481133 -  -4.2   -4.4648   ATGGCTACGAGAAAA        CGAGATTTTCAG GCTC CTAAAATTCTCA         ATAAGGCAATTAATC  68 87
JTM80_RS14370 3479368 .. 3479385 -  -2.7  -3.53444   CGATTGCCCTGGAAA             GCTAC-TC GCC GACGCAGC             CCGGTGAGGAGTTGG  47 141
JTM80_RS14360 3476962 .. 3477011 -  -8.8  -4.17556   CACAGGCTGAAGAAA TGTAATGTCTCGATGTAACGTCTC GTGC GCGACGT-ACA-CGAGACACTGCA CATAAAGGCACATTA  79 119
JTM80_RS14350 3472210 .. 3472226 -  -5.8  -3.86897   TCGATCGCCTAGAAA              CAGCGG CCCAT CCGCTA              GAAGAAGGCGTGGCG  61 165
JTM80_RS14335 3469493 .. 3469530 - -13.5  -3.53343   AAGCGCTCTGGTAAA   CCCTCT-CCCGCCGGTTC ATA AAATCGACGGGTAGAGGG   CCCAAGAACTTATGA  86 259
        msrB 3468737 .. 3468750 -  -3.7  -4.13767   TTGGCTACCGCAAAA               CGGGC TAGA GCCGG                AGCCTCACAAACAGC  62 210
JTM80_RS14310 3464847 .. 3464873 - -12.4  -3.28712   TTGGGTTTTGGACAA         TTTCTCATGGGC TGC ACCCACGAGAAA         TTGTCCAACTGCGTA  79 427
JTM80_RS14300 3463222 .. 3463235 -  -8.1  -2.78384   TCTTTTTGGACTAGA               GACGC GCCT GCGTC                AGCCCTGAGCAATCG  59 82
JTM80_RS14295 3461980 .. 3462025 -  -9.2  -2.73364   CGCCTAGCCGAATCA TGGGGATCTGTCT-CAT-TCTC CCTG GAGCTATGCAGCCAGATCCCCA AACCCTCGTCCACTC  62 48
JTM80_RS14265 3453084 .. 3453104 -  -5.5  -4.10657   TCATAGCGTTCAAAA            TTTGACTCA AAG TGACTCAAA            GTGACTCAAAGTGAC  63 315
JTM80_RS14260 3452636 .. 3452647 -  -2.2  -3.74303   AAAATCCAAAATCAA                CACT ACCG AGCG                 TCTTCGTTGATCGGC  50 16
JTM80_RS14245 3447643 .. 3447662 -  -2.8   -2.6914   TATTGGGCAGACAAC            GAGCCATC CAGC GATGATTC             CCCCTTTCCAGCCAA  40 217
JTM80_RS14235 NONE
JTM80_RS14230 3444124 .. 3444139 -  -4.6  -4.74103   TCTGCAAGGCAAAAA              GGCGCT GGTC ACCGCC               CGCGATCGCCTCTTG  76 466
JTM80_RS14220 3441439 .. 3441457 - -12.4  -5.75342   TTTTTTCAAAAAAAA             GAGGGTGC ATT GCACCCCC             AGTTTTGCAATTACA 100 91
JTM80_RS14215 NONE
        rimM 3440154 .. 3440166 -  -3.3  -3.12856   AAGTAAGAGAAAGTA                GGAGG AGA CTTCC                GAAACTTCTCTCCTC  44 42
JTM80_RS14200 3437746 .. 3437758 -  -3.3  -4.25458   AAGGGGATGAAGAAA                TGGTG CGA CCCCA                TGCCAGGTTTGCTCA  59 44
        ssrA 3437179 .. 3437224 - -27.7  -4.89838   TTAATAAATACAAAA CCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGG ATCTGTTTTTTAATC 100 106
JTM80_RS14180 3433862 .. 3433882 - -11.1  -2.54523   CGACAGGTCAATCTA            GACGACCGC AGG GCGATCGCC            CAGTTCTATCAGTTC  65 403
JTM80_RS14170 3430903 .. 3430934 -  -2.1  -2.83903   CGCTGCAAAAAGTCA      CGGCTCAGGTGGCG CAGGT CGTCGCC-GAGTCG      GGCATTCGCACCGGA  39 400
JTM80_RS14155 3429811 .. 3429829 -  -3.1  -3.07685   AAAATTCTCTAAAAT             CGGCTCT AGAAG AGAACCA             TGTCGCCCTCGATCA  44 166
        ribD 3428293 .. 3428313 -  -2.4  -3.70902   CCTCGCAGACCGAAA            TCGGCGAA CCCTT TGCGCCGG            AACGGTTGACAGAGA  51 387
JTM80_RS14140 3426065 .. 3426078 -  -3.8  -3.21218   AGCCGCGATGACGAA               GCCT CGCACC AGGC                CTTTACGCAAAAGTT  47 414
        sufR 3418671 .. 3418682 -  -7.2  -3.41125   GGCATACAGGCAGAA                GGGC GATC GCCC                 AGCCAGTTTGCTCTA  62 135
JTM80_RS14095 3417888 .. 3417929 -  -2.3  -4.03413   ATCCCGGCAGATAAA GCTTTCTAGAGGC-TTGGAG CAA CCCAAACGCCTTTGGAAAAC TTCAGCGCTTAATCA  55 121
JTM80_RS14090 3417607 .. 3417619 -  -6.9  -3.37071   AAACTGGACCTATAA                GGCGA TCG CCGCC                AATCTGCACATCACC  58 212
JTM80_RS14060 3405087 .. 3405119 -  -4.2  -4.40572   AGAAGCGGTATAAAA     CGAC-TCATGCTTGT GTAG AGAAGCATGAGGGCG      ATCGCCCCATGTCAA  66 433
JTM80_RS14055 3402731 .. 3402751 -  -9.7  -5.31456   GTAAGCCACAAAAAA            GTCCCCCTT GCC AAGGGGGAT            TTGGGGGGATCTAAA 100 61
JTM80_RS14045 3399549 .. 3399564 -    -6  -3.13403   CCTCTCTTACGAAGA              CGCGGC TCCG GCAGCG               ATGATCGGTGCGAGT  52 295
JTM80_RS14015 3391529 .. 3391540 -  -2.2  -2.72511   GCCAGTCTGGCAAAC                CTGA TTCG CCAG                 CGCCTTGCCGCCGCG  39 460
JTM80_RS13995 NONE
JTM80_RS13990 3388101 .. 3388112 -  -2.2  -3.26319   AATCGTTTAGACTAA                GTCA AGAC CGAC                 GACCTAAGCCAGGTA  44 125
JTM80_RS13985 NONE
JTM80_RS13980 3386626 .. 3386642 -  -3.7  -4.91712   CCGAAGCGAGAAAAA              GCAGAAA AAA TTTCTGT              ATTCATTTTTACAAA  74 124
JTM80_RS13975 NONE
JTM80_RS13970 3385814 .. 3385832 -  -2.3  -4.82901   TCGGCTCTAGAAAAA             GCGAACC AGATA GGCTAGC             CCCAGGTTGGTTGCC  68 161
JTM80_RS13920 3375231 .. 3375244 -  -4.5  -3.02144   TGATGCGTGGGAACA               GCTCA AGAC CGAGC                TAGAGGCGAAGCACT  47 357
JTM80_RS13910 3373639 .. 3373657 -  -7.3  -3.02461   TAAGCCCTCGCAACA             GCGCCGC CACAT GCTGCGC             CGCCACAAGTGCCAG  54 505
JTM80_RS13875 3365385 .. 3365416 -  -9.6  -4.44915   CAACGACGTAGAAAA      TCTAAAGTCCCCCTT TTC AAGGGGGA-TTTAGG      GGGATCGACTCAGGG  90 90
JTM80_RS13860 3361166 .. 3361177 -  -2.2  -3.08314   CCCAATGCTCAAAAG                CTCC CAGA AGAG                 GCGTTTGCTACCACC  42 41
JTM80_RS13855 NONE
JTM80_RS13850 3359785 .. 3359803 -  -8.2  -2.93393   CTGCATGGTAGAAAT             GACAGACT TGC AATCTGTC             GCCTACGTAGCCAAT  60 66
JTM80_RS13845 NONE
JTM80_RS13840 3357727 .. 3357740 -  -3.1  -2.71712   TTCGTTTTGTTAAAT               TC-CCG GCG CGGCGA               TTCCTGAATCCCTAG  41 102
JTM80_RS13835 NONE
JTM80_RS13830 3353385 .. 3353432 - -12.2  -2.73007   AAGATCCGCCTAAAT CCCCTTAAAAAGGGGGAC TTTAAGGCGGTT TCCCCCCTTTTTAAGGGG GGCTAGGGGGGATCT  74 258
JTM80_RS13825 3351744 .. 3351802 - -13.3  -2.73221   GCAAGAATTATAGGA CTTACGCAGTTGGACGATTTCTCGCGGGC TGC GCCCGCGAGAAATCGTCCGAA-ACCCA-G CAAACTTATCGCAAG  79 103
JTM80_RS13820 NONE
JTM80_RS13815 3350095 .. 3350146 - -16.8  -3.55548   CAAGATCCCCCTAAA CCCCCCTTAAAAAGGGGGAC TTTAAGGCGGTT TCCCCCCTTTTTAAGGGGGG CTAAGAGGGATCTCT 100 73
JTM80_RS13805 NONE
JTM80_RS13800 3346586 .. 3346597 -  -7.2  -2.55437   GAGGAACATTAAGAT                GGGC GATC GCCC                 TCGTTCAGTCCCATT  55 7
JTM80_RS13795 3345063 .. 3345087 - -10.7  -3.53563   ACACTTCTGCCTAAA          TCCCTCTCCCA AAA CGGCAGAGGGA          CTTTCAATCCGACTC  77 499
JTM80_RS13770 3337060 .. 3337087 -  -9.1  -4.70659   GCCCAGACGGAAAAA        GCCTCGTCAGC GGCGGG GCCGACGAGGT         GGTAAGGATATGGGA  86 334
JTM80_RS13755 NONE
JTM80_RS13750 NONE
JTM80_RS13745 3331968 .. 3331985 -  -5.5  -2.78422   AGAGATATTGAACTA             GCGATAG GCGG CGATCGC              TTCTATTTGCAACTG  48 5
JTM80_RS13740 3329685 .. 3329710 - -10.5  -3.11786   GACATTGAACACAGA         CGGTTCAAACC GGGT GGTTCAAACCG          GGTGGTTCAAACCGA  71 94
JTM80_RS13730 3327830 .. 3327868 -    -9  -5.40072   TTTGCTCTAAAAAAA  TGGGCTTAGGGCTTGAT TTGCCT ACCCA-CCCTAAGCCCA   TCAAACGAACTAACC 100 169
JTM80_RS13725 3325765 .. 3325789 -  -7.1  -3.28712   GTTGTCGGGTCATAA          CTAAGGTTGAC TCA GTCGCCCTTAG          TTATGATCATACTCC  58 48
JTM80_RS13720 NONE
JTM80_RS13715 3323163 .. 3323175 -  -7.7  -2.62515   AAGGTTTTCACAGCA                GGCTA TCT TAGCC                TGCCAAGGGGAGCTT  55 20
JTM80_RS13710 3322291 .. 3322330 -    -8   -3.2048   CCTAAACTTTACTAA  TCACTAGGCATCTAGTAA TCAA TCACTAAGTGCCCAGTAA   TCAACTACAGGCACC  64 62
JTM80_RS13705 NONE
JTM80_RS13700 3320241 .. 3320251 -    -4  -4.62471   AAGTTAGACAGAAAA                 CTAA CCG TTAG                 TTGTATCAGACGCTT  68 41
JTM80_RS13695 3318847 .. 3318860 -  -3.7  -2.79915   ATGCAGTTTATGACA               GGGGC GATC GCCCA                CTCATCTCCCGACTT  44 68
JTM80_RS13690 NONE
JTM80_RS13685 NONE
JTM80_RS13680 NONE
JTM80_RS13675 NONE
JTM80_RS13670 3315251 .. 3315271 -  -7.5  -3.07816   TTGGTAGTCATTGAA            GCTCATAGG CAT CCTTCGAGC            AGAGCGTTCCTGGTA  59 46
JTM80_RS13660 3313648 .. 3313674 - -12.3  -3.57144   CCCCTCATCCCTAAA         TCCCTTCTCCC ACAAG GGGCGAAGGGA         CTTGAACTGCCAAAC  82 141
JTM80_RS13655 3311952 .. 3311998 - -27.5  -4.89838   TTAATAAACATAAAA CCCAAAGACCCTGCGCCGCCCGC TGC GCGGGCGGCGCAGGGT-TC-GGG ATCTGTTTTTTAATC 100 211
JTM80_RS13645 3306686 .. 3306706 -  -3.3  -5.47218   CCGCAGCCAAAAAAA           GAGCCGCT GGCTTA AGCGG-TC            TGTTTCAAATAGGAT  85 357
JTM80_RS13610 3301161 .. 3301175 -  -4.3  -2.52464   TTGTTGTCCAATCCA               TTGAG CTGTC CTCAA               CAGGAGGTTCCAGGC  44 22
JTM80_RS13600 3300184 .. 3300196 -  -3.3  -2.87051   TTTTCATCATCAAAC                CAACC TTA GGATG                ATGGATTGACTGCGT  42 18
JTM80_RS13595 NONE
JTM80_RS13590 NONE
JTM80_RS13585 3297674 .. 3297686 -  -9.1  -3.75437   AACGATCGCACCAAA                GCCAG GAA CTGGC                TCAATCGTTTCAATC  69 499
JTM80_RS13560 3294177 .. 3294215 - -10.4  -4.57569   GGACTTGGGTAAAAA   CGTGCTGGGAACCTAT GGGGCGT ACAGGTTCCCAGTACA   CTCACTGATGAAGTA  91 48
JTM80_RS13525 3286633 .. 3286652 -    -5  -2.87136   TCAGCAATTATCACA            GCTAA-GGC AGA GCCGCTAGC            GTTTGCTGAGATCAT  49 277
JTM80_RS13515 3285645 .. 3285655 -  -3.2  -2.78596   GATTTTGCGATCACA                 GTCC TGA AGAC                 AAACCATGTCTAATC  41 39
JTM80_RS13510 3284952 .. 3284964 -    -2  -3.19398   AAAAATGAGAGGCAA                TTGT GGGCA ACAA                GCTTTGGGCGTGTTT  44 227
JTM80_RS13505 3284399 .. 3284425 -  -2.9  -4.75472   GCTAGAGGAAGAAAA        TCACCC-TGGCA AAAC TGCCCTGGGGGA         AGACAAGCACTGGCA  73 73
        nifB NONE
JTM80_RS13440 NONE
        nifS NONE
        nifU 3273027 .. 3273043 -  -3.6  -3.09635   ATTCGGATCAGGCAA              GGGCCT GGAGG AGGGCC              GGCGGGTCGCGCCCG  46 137
        nifH 3272057 .. 3272077 -  -5.4  -3.28712   GCGCCTGGCTCAGAA            CCCTGGGA TCTGC TCCCAGAA            ACCTAGACCACTGCC  53 28
        nifD 3270410 .. 3270443 -  -7.3  -2.71144   CATTGGGGCGAAGTA     CCCATGGGGGCGCAC TGCT GTGCGCCCGTACAAG      GCTCAAAGTTTGCCT  55 39
        nifK NONE
JTM80_RS13410 NONE
JTM80_RS13405 3267861 .. 3267875 -  -4.2  -3.14881   GAAGGGGTGGATGAA               TGAAGG GAA CCGTCA               GGGCATAGTGCTGAG  48 89
JTM80_RS13400 NONE
        nifX NONE
JTM80_RS13390 3263744 .. 3263759 -  -3.2  -2.78508   TATCTCTGAAAAGAC              TTTCGC ACTT GCGATA               ATTTCTCTGGATTTC  41 206
JTM80_RS13385 NONE
        nifV NONE
        nifT 3261582 .. 3261597 -    -9  -2.78679   GGTGGTGAGGTAAAT              CGGTCT AAGC AGACCG               GGGATTAGAAGTTTC  62 42
JTM80_RS13370 NONE
JTM80_RS13365 3259057 .. 3259067 -  -4.6  -3.90922   AGCCTTCTTAAACAA                 GGCC CAG AGCC                 TCTTGCATTCGAGTG  59 7
JTM80_RS13355 3256569 .. 3256589 -  -3.9  -2.55544   TGAGGATGCAACTGA            CGATGGATG AGC CAGGCATCG            CGGATTTGCCTAGAG  42 35
JTM80_RS13350 NONE
JTM80_RS13345 3254707 .. 3254720 -  -3.8  -3.64822   AGCTTCCCAGGGAAA               CCGA GCCAAA TCGG                TGGGGTCGCAGGTCA  52 60
JTM80_RS13340 NONE
JTM80_RS13335 NONE
JTM80_RS13330 NONE
JTM80_RS13325 3251892 .. 3251906 -  -4.2  -3.41527   CAACGTCCAGCATAA               GCAATC ACG GCTTGC               TCGCTCAGTTCACCA  52 63
JTM80_RS13320 3247936 .. 3247994 - -20.4  -2.75081   TACTCTCAAAATTCA CCACAGAGACACAGAGGTCACAGCGA TTTACTT CCTCCGTGTCCTCTGTGCCTCCGTGG TTCACTCTCAAAATT 100 60
JTM80_RS13315 3247037 .. 3247092 - -21.3  -2.60555   TAATTCCAGAATTCA CCACAGAGACACAGAGATCACAGAG TTATTT CTCCGTGCCCTCCGTGCCTCCGTGG TCTAATTCCAGAATT 100 60
JTM80_RS13310 NONE
JTM80_RS13305 NONE
JTM80_RS13300 3245670 .. 3245680 -  -4.6  -3.10164   TCATCCACGAGCGAA                 GCCC ATA GGAC                 GGCACGACAGGCGGC  48 210
JTM80_RS13290 3242398 .. 3242413 -  -2.4  -2.62983   GCCAGGCCTACAGCA              GCCGCG TTTG CACGGA               GTCGCTCGCCTGTAG  39 2
JTM80_RS13285 3241805 .. 3241826 -  -6.5  -3.10112   ACTCAATTGACCTAA           GCGTCG-CTG TAG CAGACGGCGC           TCCAGGGTAACGATT  56 269
JTM80_RS13275 3237914 .. 3237927 -  -5.2  -3.29144   CCACTGGCTCCAGAA               CCGC GCCTGA GCGG                GCAGCGTCGGGGAGA  53 387
JTM80_RS13270 3236664 .. 3236692 -  -3.9  -3.19668   GATCATCGAAGCCAA       GCGCGAAAACCT CTACAC AGGCT-TCACGC        AGCTTGGTGCAGAGC  47 284
JTM80_RS13260 3235698 .. 3235711 -  -2.3  -2.67513   ATAGTTAGAACTAAC               TGGCT CGGA AGCCT                TAATAAGGGGGATTT  39 183
JTM80_RS13255 3234630 .. 3234663 -  -4.5  -4.23892   CTCAATCATCCAAAA     TCGCCCATCTAAACT CCAA AATGCAGTCGGGCGA      TCGCCCCCCAACCCG  63 47
JTM80_RS13250 3233247 .. 3233265 -    -3  -2.53822   CTGACCCCAGAACAG             CGGCGGAA ATT TCCCCCCA             TCGCCCCTGACTTTG  39 388
JTM80_RS13235 3230480 .. 3230530 - -15.7  -3.55548   CAAGATCTCCCTAAA TCCCCCTTAAAAAGGGGGA CTTTAAGGCGGTT TCCCCCTTTTTAAGGGGGG CTAGGGGGGATCTCT 100 162
        mnmH NONE
JTM80_RS13220 NONE
JTM80_RS13215 3226619 .. 3226638 -  -4.9  -3.25823   GGCTGGGGAGATGAA            GCACGGC CCGATC GCCCTGC             TGGATGAAAAAGTGC  49 437
JTM80_RS13200 3223461 .. 3223505 -  -5.6  -4.64334   AACCTCTCAAGAAAA CGGAGCAGGACTCTGGATGG AAAAG CCACCTCAAACCCTACCCCG ACCCGGATATTGCGC  73 172
        rsgA 3221522 .. 3221539 -  -3.3   -3.5936   CCGAAACGCTGGAAA             CCGGCCT CCGC AAGACGG              TGCAGTGGTACCTGG  49 271
JTM80_RS13170 NONE
JTM80_RS13165 3214020 .. 3214037 -  -2.6  -4.05788   CCCTCGGAAATCAAA             CCCGGC TGGCTG GCCAAG              CGCCTGTGCTACTAC  56 504
JTM80_RS13155 NONE
JTM80_RS13150 3210627 .. 3210644 -  -3.4  -3.36655   GTAGAGATAGAGGAA             GGCAAT GGGGCG ATCGCC              GCTGGTTATTTCAGG  47 128
JTM80_RS13145 3209454 .. 3209466 -  -3.3  -3.24825   TGAGTTCAACGAAGA                CTCTG CGG CTGAG                ATGCACTATTGGACG  45 374
JTM80_RS13125 3205400 .. 3205421 -  -7.9  -4.09685   GGCGATTGTGGAAAA           GGTGAGGGC GATC GCCCCCATC            GTCGGCCGCACCCTT  71 185
JTM80_RS13115 3202718 .. 3202739 -  -2.9  -4.15044   TGCTGCTCGAAGAAA           CGCTGCCCA CGGC CAAGCAGCA            CGGCTTTGCTTGCTT  60 343
JTM80_RS13090 3195156 .. 3195173 -  -4.1  -4.60255   AGAACTTGCCAAAAA             GCTGC TCTGGGTG GCAGC              GATGTTCCAACTGGT  70 315
JTM80_RS13065 3190981 .. 3190993 -  -4.1  -2.91288   GAAGCCAGACCAAAT                CCATC AGC AATGG                CTCTATCCAAATCAA  45 319
JTM80_RS13060 3189925 .. 3189943 -  -8.1  -3.31144   TTCGGATCTTCACAA             GGCTCCC GCACT GGGAACC             AGCGTGATTTCTTCA  64 1
        folE 3188914 .. 3188941 - -12.8  -4.45175   TAGTAAAAAAGTAAA        GTCGGCTTCTGC CCAA GCAAAAACCGAC         TGTGGCAAGAAGTTG 100 131
JTM80_RS13050 3187960 .. 3187970 -    -4  -4.07568   GCGCTGTTTTCAAAA                 TTGT TTA ACAA                 TTGCCTGCGCTTTTG  59 47
JTM80_RS13030 3177465 .. 3177478 -  -5.2  -3.85698   TGTTTTTCCGAGAAA               CGGC CGGTGC GCCG                CCCATCGGGTCGCTG  61 395
JTM80_RS13020 3175519 .. 3175529 -    -4  -4.77896   TAATTAATGGAAAAA                 TCTA TGC TAGA                 AGACAAAACCTGCTC  72 21
JTM80_RS13015 NONE
JTM80_RS13010 3172071 .. 3172084 -  -2.3  -3.05224   AGATGCCCTTAAAAT               GCGTC GCAC GACGG                GTCTAGACGGGTCTA  42 38
JTM80_RS12995 3165679 .. 3165701 -  -9.8  -5.33785   AAGTAGCAGAAAAAA           GCGCTCAGTC AAA GGCTGAGCAC           TTTTGATAAATGAAG 100 47
JTM80_RS12990 3163665 .. 3163680 -    -4  -2.75712   GGAGTCAGTTAATGA              CATG-GG GCA CCTCATG              ATCTAGGATGAACGG  44 43
JTM80_RS12985 3162319 .. 3162360 - -18.9  -2.72829   GAGATCCCCCTAAAT CCCCCTTAAAAAGGGGGAC TTTT ACCCACCTTTTTAAGGGGG  GCAGGGGGGATCGGC 100 82
JTM80_RS12980 3161238 .. 3161252 -  -2.1  -2.65298   GGGATTTATTACAAC               GCCTT CTTCC AAGAC               AATGACAGCTTGATT  38 495
JTM80_RS12970 NONE
JTM80_RS12965 NONE
JTM80_RS12960 3156985 .. 3157000 -  -6.1  -2.75844   TGGCGCAGGGGAAAG              GCTGC GGCTGT GCAGC               ACGGCATAGGTGAGG  51 506
JTM80_RS12955 3154886 .. 3154898 -  -5.5  -3.88291   GACTATCGCCACAAA                CGCAC CGA GTACG                CGGCTCGCGGCATCG  61 377
JTM80_RS12915 3147698 .. 3147715 -  -2.7  -5.60993   TCTTTCAGAAAAAAA             GCTGTCGC TCG GCAA-AGC             CGCTGAACTTTCGGG  86 42
JTM80_RS12890 3138753 .. 3138766 -  -2.3  -2.57132   TCGGTTGTTCAGAAG               CCGCT CTCA AGAGG                AGTTGTTTAACCCTC  39 32
JTM80_RS12880 3134187 .. 3134207 -  -3.2  -3.06915   ACTCACCGCAGCTAA           GGTCGCCGA CTGC CCAGCG-CC            GCCCAGTCTTTTAGC  44 1
        minC 3132992 .. 3133008 -  -5.1  -2.52946   TTTTTGCACAAAACC              CTGAATC CTG GATTCTG              TTAGGCATCGGGCGC  47 26
        minD 3131998 .. 3132014 -  -4.3  -4.08706   TGGTGAGGAGAGAAA              CCCCCGT GCT AAGAGGG              TCGGCACTGGCTAGC  61 36
        minE NONE
JTM80_RS12860 3131064 .. 3131119 - -13.2  -5.23316   GACCAGATTAAAAAA CAGATCCTGA-ACCCTGCGCCGCCCGC GCA GCAGGCGGCGCAGGGTCTTTGGGTTTT ATATTCATTAATGTC 100 325
JTM80_RS12850 3128933 .. 3128947 -  -2.8  -3.07816   CGCCGAGCGATGGAA               TCGC TATTTCC GCGA               CTTTGGGCTAAATGC  43 138
JTM80_RS12825 3124954 .. 3124970 -  -7.3  -3.86015   GATTTGCTTCATAAA              TTAGCTC TTA GAGCCAA              CGAAGCCATTTTCAG  69 289
JTM80_RS12815 3123932 .. 3123965 -   -11  -2.72371   GTCTTTAAAGAACAG     GAGGCTGGGCGG TGTATTGCGT CCGTCCAGCCTC      ATACCGAAACTGGCA  71 69
JTM80_RS12805 3121428 .. 3121438 -    -4  -3.78067   AATATGTAATGTAAA                 TCAA CGG TTGA                 AGGTGCAGTTTGAAA  54 512
        hpsU NONE
JTM80_RS12790 3118903 .. 3118918 -  -4.6  -4.35461   TCAATACCACGAAAA              CCCAGC TCAA GCTGGC               GCTGGAAGATCTGAA  67 118
JTM80_RS12780 NONE
JTM80_RS12765 3113923 .. 3113949 - -10.2  -4.41494   CATCGCGAAGCAAAA         CAGCGTGCAG CACTTGT CTACACGCTG         TCTGGTATTCACTAA  89 80
JTM80_RS12755 3110485 .. 3110503 -  -9.6  -2.52896   TCATCCCCCAACCCA             TTCTCCCA GGG CGGGAGAA             GGGGAGCAAGAGAGG  64 135
JTM80_RS12750 NONE
JTM80_RS12745 3109159 .. 3109169 -  -2.4  -3.41126   TCAGAAACGTGATAA                 GCGC CTC GCGA                 GGAAAGAGCCTAAGG  46 35
JTM80_RS12740 3107247 .. 3107261 -  -2.8   -3.1505   ATGAGCGTGGATTAA               TAAAGC GCG GCTTAA               TAATAGGTTCCAGAT  44 22
         upp NONE
JTM80_RS12705 3100064 .. 3100080 -  -6.5  -3.94409   GACAGGATGTACAAA              CGGCTGT GCA ACAGGCG              GATTGGCAACAGGGT  67 403
JTM80_RS12700 NONE
JTM80_RS12695 3098998 .. 3099013 -  -6.8  -3.86346   GGAGTTTTCTAGAAA              TCACCC GATT GGGCGA               TCGCCCACGCCGATC  67 10
JTM80_RS12690 3098270 .. 3098290 - -14.7  -4.89477   GTTGCAATAAGAAAA            GGCACCCCC GAT GGGAGTGCC            TGCAACCAGCTAACT 100 105
JTM80_RS12685 3097766 .. 3097792 -  -4.5  -3.16088   ATAGCTCAGCAAAAG        CAGCGTGCCGAT GCTG ATCGACAC-CTA         GTGCTGTTGCCAGAG  48 23
JTM80_RS12680 NONE
JTM80_RS12675 3094786 .. 3094804 - -13.2  -3.54424   TTTGATCCCCCTAAA             TCCCCCTT GGC AAGGGGGA             CTTCTGGACAGCGGC  86 215
JTM80_RS12660 NONE
JTM80_RS12655 NONE
JTM80_RS12650 3089116 .. 3089130 -  -4.2  -3.15073   ACTGAGCAAAACAAT               CGGCTA GGT CAGCCA               GGAACGATTCGGATC  48 184
JTM80_RS12645 3086742 .. 3086756 -  -4.2  -2.60075   CGGGTCTTAACTAAG               GCTACT GCT AGAAGC               GTTCCCCAATGCCAA  44 18
JTM80_RS12640 3085768 .. 3085783 -  -6.8  -3.28924   CAGCGGCGCTGAGAA              TCGCGC TAGG GCGCAA               ACGGGGACAGTCGGA  58 15
        fabZ NONE
        lpxA NONE
        lpxB NONE
JTM80_RS12620 3082222 .. 3082233 -  -2.2  -2.57132   GCGCTGCTTTATAAC                CTGC TGCT GCAA                 ACGAGCTGCTTTCGC  38 217
       psb28 3077969 .. 3077983 -  -5.7  -2.75536   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 148
JTM80_RS12595 3076989 .. 3077001 -  -9.1  -2.80935   ACCGCAGGCACTACA                CCTGC CCA GCAGG                TCGGCATTCCTGCGG  58 427
JTM80_RS12580 3073091 .. 3073105 -  -8.6  -2.73635   TAAATCTGGGCAAAG               CCTGAT TGG ATCAGG               ACTCACGCACTTGCG  59 194
JTM80_RS12575 3072096 .. 3072131 - -10.5  -4.89838   TTAATAAATATAAAA    TCCAAAGACCCTGCGC CGCCC GCGCAGGGT-TCAGGA    TCTGTTTTTGAATCT 100 240
JTM80_RS12550 3068140 .. 3068156 -  -6.5    -5.626   CAGTCCACAAAAAAA              TTGGCGC AGC GCGTCAA              CTATTCTGGACAAGA 100 58
JTM80_RS12545 NONE
JTM80_RS12540 3065510 .. 3065525 -  -2.6  -3.32807   CCAAAACAGGAGCAA              TG-GATC AGC GATCACA              AAGACAAAGTGAATG  46 364
JTM80_RS12515 NONE
JTM80_RS12510 3057319 .. 3057333 -  -7.1  -3.53091   AGTCTGTCGTCTAAA               GCGCT ATGAG AGCGC               TGTGAGGCTGTATCT  62 315
JTM80_RS12485 3050077 .. 3050097 -  -3.2  -2.74784   ACGTCCCAAAAGGTA            TCTGGGGG GCGAT CGCCCAAA            GGTACGGGTGCTGCC  41 96
JTM80_RS12475 3045433 .. 3045446 -  -8.1  -2.64155   CGTTCTGCAAACCGA               CCAGC CCGT GCTGG                TGTATTTTTGGGCCC  53 330
JTM80_RS12460 3042846 .. 3042859 -  -5.3  -3.39327   TGCTTATAGCTAGAA               CTTGT AAGA ACAAG                TCAACACCCGTCAAC  54 321
       ftsH2 3040651 .. 3040695 - -17.6  -4.32649   ACTGCAAAAATCAAA TCACTAAAAAAAGCTGCTGTG AAAC CACAGCAGCTTTTTT-AGTAA GAACTGAAGCAGAGC 100 76
JTM80_RS12445 3036772 .. 3036792 -  -2.6   -3.4489   AATCTGTAGAACCAA            TCTGTAGA ACCAA TCTATAGA            GCCAATCTATGAAGC  46 109
        rfbF 3035596 .. 3035618 -  -9.8  -3.28712   TTCGTCGCTTGAGAA           CCCGCCGAAC AAG GTTCGACGCG           GTTCGCGCGTTGCGT  70 85
        lhgO 3034207 .. 3034221 -  -5.7  -2.75536   AAAGGAGCCTGAAAG               CCTTG TTAAT CAAGG               ATTTCCGAGAAACCG  51 139
JTM80_RS12430 NONE
        rfbC NONE
JTM80_RS12420 3030722 .. 3030760 -  -9.5   -5.4182   AATTAGAAATAAAAA   TCGAGGTTGGGCTGCCC AAGCG GAGTTGCCCAACCCCAA   TGAAACCTAAAAGAA 100 402
JTM80_RS12415 3029132 .. 3029167 - -10.3  -3.87869   GCAAGCTCTCAGAAA    CCCTCCGAACCCCGC CATTGT GCAGGAGACGGAGGG     TTTTCTAGTTCGTCG  82 80
         sds 3026930 .. 3026942 -  -9.1  -2.72558   ACAAGTGCCTAATTA                GCCGA AGC TCGGC                AGTTGGGCGATCGCC  62 68
JTM80_RS12395 3025412 .. 3025467 - -16.8  -5.23316   GACCAGATTAAAAAA CAGATCCTGA-ACCCTGCGCCGCCCGC TGC GCGGGCGGCGCAGGGTCTTTGGGTTTT ATATTTATTAATGTC 100 300
JTM80_RS12385 3022052 .. 3022094 -  -9.2  -3.02043   AACTGTGCCGCAAGA CCACCGCCCCGACAAGCGGA TTTAC TCCG-TCACCGAGGCGG-GG CAGCAGGCGTTGCGC  64 411
JTM80_RS12375 3021169 .. 3021184 -  -3.3  -3.01791   AGGCGGGGCGGAAGA              GAAAG GTCGCT CTTTC               CTTCATTCCATCATC  42 52
JTM80_RS12370 NONE
JTM80_RS12365 NONE
        rsmG 3018356 .. 3018389 -  -4.6  -4.07885   GACGCTGCCGTAAAA    CGC-GCCGTAGATCTGG TAG CCCG--CTACGGCGGCG    AAGAATTTGCAGTGA  62 332
JTM80_RS12350 3015847 .. 3015905 - -12.4  -3.42257   GCTGAAACAGATGAA GCCCGCCGAGTCGGGCGATTCGCGAAG CAATCC CTACGGGAATCGCCCCAG-CAGCGAGC AGTCCAGCAGCTAGC  80 112
        carB 3008642 .. 3008681 - -10.8  -5.08178   AGACAGATATAAAAA  CGAGAGGTCTTGAATTGG AATC CCGATTCAAGACCTCTTT   CAGTTAGAGCAGCTT 100 80
JTM80_RS12315 NONE
         tgt 3002706 .. 3002725 -  -4.2   -3.4811   GCGCTCAGAATAACA            GGGCTTGA ACCC CCAATCCC             CAATCCCCAATCCAA  52 43
         smc 2996114 .. 2996168 -  -3.6  -5.15381   AAGAGACGGAAAAAA CGAAAAGTGAAAAACGAAAAACGGAA CCT CTTCGCCCTTCGCCCTTCTCTCTTCA TTCTTCTCTCTTCGT  78 77
JTM80_RS12290 2994860 .. 2994872 -  -3.3  -3.67611   TCGATTCCAAGACAA                CACAG TTT CTGGG                CTTTCGGGACATGTG  52 136
JTM80_RS12255 2982560 .. 2982570 -  -3.2  -3.61356   AGCACTTAGGGCAAA                 CAGC GGC GCTA                 ATCCTGGAAGCGGGG  49 23
JTM80_RS12250 2981141 .. 2981167 - -17.4  -2.70932   CTGGGCTTGGAACGA         TTTCTCGCGAGC GCA GCCCGCGAGAAA         TCGTCCAACTGCGTA  95 188
JTM80_RS12245 2979538 .. 2979553 -  -4.6  -3.22789   ATTAGATGAATCGAA              GGAGGG CGAT CGCTCC               AGTTTCGTCCGCCCT  50 141
JTM80_RS12240 2978515 .. 2978539 -  -5.8  -3.24825   TGATCGTAACCAACA         CGGGGATTCAGG TTG CCT-A-TCCCCG         CTGGGTTCCCGATTT  51 400
        atpD 2975855 .. 2975882 - -11.4  -2.54193   GATCATCTCAAGCCA        GGTATGTACAGC GTAA ACTGCACATACC         CAGCGATTCAAAACA  70 41
JTM80_RS12220 2975272 .. 2975314 - -15.6  -5.54907   GCGAGAAAACAAAAA CACGATGGGTAGACCCTTGC TGA ACTAGAGTCTGCCCATCGCG TTTGGGTGAGATGAA 100 69
JTM80_RS12185 2968906 .. 2968916 -  -5.4  -2.72043   AACTCCCTCCGAAAT                 CACT GTG AGTG                 CCTCTTGCGGCACGA  47 189
JTM80_RS12175 2967350 .. 2967381 - -14.4  -4.55295   TCCCTTAGAAATAAA      CAGCAGCCCCGACG AACC CGACGAAGCTGCTG       AGCGCATGAGGAGTG 100 173
JTM80_RS12155 2963316 .. 2963337 -  -5.1  -3.73072   AACTGGTGGATCAAA           CGCGGCGAGC GCC ACTCACCG-G           TCGGGAGATGCCGTG  56 110
JTM80_RS12145 2961305 .. 2961324 -  -2.8  -5.09426   TGGAATCCCAAAAAA            CTGCCTAG TCAA CTAGCCAA             CAATGGGATGACGAG  76 446
JTM80_RS12120 NONE
JTM80_RS12115 2953050 .. 2953074 - -15.8  -2.57132   TGGGTTTTGGACAAT          TTCTCGCGGG TGCAG CCCGCGAGAA          GTTGTCCAACTGCGT  86 76
JTM80_RS12060 NONE
JTM80_RS12055 2939559 .. 2939603 -    -5  -3.96148   TTTTTGGACTACAAA CCAACGGCCGCACCGA-ATCA ATCC TCATGTCGCTGCCGCCGCTAG TGCGCTGGGAATATA  62 123
JTM80_RS12040 2937538 .. 2937570 -   -12  -4.19258   ATAGCCCATGCAAAA      GCGGCCAGGGAAAA CCGTC TGCTCCCTAGCCGC      TTTTTGGCACTGTTT  95 259
JTM80_RS12035 2935723 .. 2935746 -  -2.4   -3.1372   CACTCTGGACGAATA          TTTTTGCAGC ACAC GCTGAAACAA           AAGAACACCTTGAAA  42 70
JTM80_RS12030 NONE
JTM80_RS12025 NONE
JTM80_RS12020 2930254 .. 2930267 -  -2.3  -2.61383   AGTTGGACTCACAAG               GCGCT AACG AGCGG                TGTTCTTAAACGCGT  39 15
JTM80_RS12015 NONE
JTM80_RS12010 NONE
JTM80_RS12005 2927009 .. 2927021 -  -3.4  -4.22948   AAAACGCAGGCAAAA                CGTT GGCAA AACG                CAGGCAAAACGGCAG  59 142
JTM80_RS12000 2925482 .. 2925492 -  -3.2  -3.60234   CCATAGAGTTTCAAA                 CGTG CTT CACA                 GCAGCTTAGTCAACT  49 104
JTM80_RS11995 NONE
        carA NONE
JTM80_RS11985 NONE
JTM80_RS11980 2922148 .. 2922164 -  -2.1   -4.3586   CGAGGCACACCAAAA              TCTGGGC GTG GCGCTGA              TCAAGCTGGGGCAGG  62 164
JTM80_RS11970 2918161 .. 2918219 - -17.7  -2.62184   TTTGTGGGCATAGGA CTTACGCGGTTGGAGGATTTCTCGCGGGC GCA GCCCGCGAGAAATCCTCCAAA-ACCCA-G AAAACTTATCGCAGT 100 124
        rpmH 2917679 .. 2917706 -  -6.3  -3.98913   TCCATACGCAAACAA        GCTAG-CTCCAG GCAAA CTGGTGGCTAGC        TCAAACCCCTATCTG  66 60
JTM80_RS11960 NONE
JTM80_RS11955 2916569 .. 2916589 -  -8.3  -3.18452   TCCGGAAATAAACTA            GCTAAGTGC TAC GCATTTAGC            TTCACTGGATGTAAT  64 222
        yidC NONE
JTM80_RS11945 NONE
JTM80_RS11940 NONE
JTM80_RS11935 2912503 .. 2912513 -  -5.4  -3.57144   TGTTCGAGTGGGAAA                 CTGT TCG ACAG                 GAAACTGTTCGACGG  56 123
JTM80_RS11930 2911578 .. 2911592 -  -6.4  -4.62783   GATCGACCCCAAAAA               GAGCGA ATA TCACTC               GCTACTGGCGGCGGC  78 399
JTM80_RS11920 NONE
JTM80_RS11915 NONE
        fabG 2908091 .. 2908108 -  -3.4  -3.32963   AGCCTGACGCTAGAA             GACCTA GCGGCA CAGGTC              GAAGCGGGAACCTTC  47 283
JTM80_RS11900 2905986 .. 2906016 - -11.2  -2.79501   GACAGTGCTAGCAGA       CTGGGAAACTTCAG TTT CCGAAGCTTCCGAG       AAGCTTCCAACCGGA  71 216
JTM80_RS11895 2904367 .. 2904398 -  -6.5  -3.09492   TGGTTAAGGTGAATA      CGCTCCAGGCGCTC AGGCA GAG-GCCGGCAGCG      CGGTTTGCTTTAGCT  56 6
JTM80_RS11890 2902481 .. 2902494 -  -5.2  -3.04398   TTTCTGGCCGAAAAT               CCCC TGGGTC GGGG                CGATCGCATTCGCAA  51 76
JTM80_RS11870 2896940 .. 2896956 -  -6.5  -3.18681   GCTCAACCCCACCAA              CGGCG CACCCAC CGCCG              GGACGTTTCTGACCG  54 333
JTM80_RS11845 2890548 .. 2890605 -  -7.8  -3.29613   AAACGTTAAACGGAA GAACAAAGAGGGAAGACGGAAGAGCG GGTTTT CGTTCTTCGTTCTTCGTTCTTCGTTC TTCGTTCTTCGTTCT  61 87
JTM80_RS11830 2882493 .. 2882550 - -20.3  -3.24144   AGAAAAAAGAAGAAC GAAAAGAGAAGAACGAAGAGGGAAGAA TGGT TTTTTCGTTCTTCGTTCTTCTCTTTTC GTTCTTTAAAAGTTC 100 60
JTM80_RS11815 2878348 .. 2878359 -  -2.2  -3.60475   AAGCTCGATTCCAAA                CAGC AGGC GCTA                 ATTTTGGGGCACGCC  47 170
JTM80_RS11805 2875941 .. 2875973 - -17.1   -3.4243   GACCCAAAAGTAAGA      CAGCGAGAACTCCGC AGG GCAGAACTCTCGCTG      TTGCAAAGATTTAGT 100 310
JTM80_RS11800 2874114 .. 2874129 -  -6.1  -2.53263   GCGATCGCCAACCTA              GCAGG TTCCGC CCTGC               TCCCTGGCATCCAGG  48 343
JTM80_RS11790 2868963 .. 2868985 -  -3.3  -2.98436   AACTAAGTCAAACCA           TCAGGTCAG GCAAG CAGCCCTGA           GTGCGAGCAGCCCTG  42 135
JTM80_RS11780 2865479 .. 2865489 -  -2.6  -3.28712   CCGGCCCTTCCATAA                 TTTA GGG TAAA                 TGTAATCATCTCCGA  44 219
         pyk NONE
JTM80_RS11770 2861955 .. 2861971 -  -2.1  -3.53811   GCGACTTGTGGCAAA              GGGTCAC TTG GCACCCC              CATCGCCTTGTGCGA  47 84
JTM80_RS11765 2861154 .. 2861172 -  -8.8   -3.0579   AAACGTCCCTAAAAG             GCTCAGCA CTC TGCTGCGC             TATCCCGCCTTAGCT  65 9
JTM80_RS11745 2854443 .. 2854461 - -13.2  -3.55622   TCGAACCCCCTTAAA             TCCCCCTT AAA AAGGGGGA             CTTCTGGAGTGGCTC  86 101
JTM80_RS11740 2853340 .. 2853377 -  -7.1  -4.90266   TCCAGCAATCAAAAA   GACAGGGATAAGACAGA AACT TCCATCCTATCCTTATC    TAATCGTCAAACCAA  82 68
JTM80_RS11735 2851622 .. 2851634 -  -5.5   -4.1196   AATCGACGGCGAAAA                GGCAA AGG CTGCC                CGCGCCATCATCGAG  66 432
JTM80_RS11725 2847300 .. 2847327 -  -9.9  -5.47914   AAAAAGCAGAAAAAA        GAGGCGTAGAG TCTGAT CTCTACACCCC         TCACTCTAAAAAAAC 100 59
JTM80_RS11705 2843722 .. 2843747 -  -2.5  -3.73042   TCCGCCAGCAAAAGA         CGCGCTGG-GCA AGC TGCTCCAGCAAA         CGCACCATCAGCCTA  51 308
JTM80_RS11680 2839778 .. 2839794 -  -2.2   -4.2349   TCTGCACACCGAAAA              CGTCGA GTTTT TCCACG              AAAATCCTGAAGTCA  59 262
JTM80_RS11670 2836110 .. 2836122 -  -5.5  -2.52676   GAGGTGCGGAAGCTA                CCCCA TTT TGAGG                GGGATGAGCGAACTT  47 132
JTM80_RS11665 2835040 .. 2835080 -  -7.5  -3.54307   AATATTTTTTCCAAA  GCATGAACTGTTGTGTGGC AAC ACCGCGCCACAGTTCATTC  AAGAAGTCTAATTTC  64 433
JTM80_RS11650 NONE
        purE 2832270 .. 2832296 -  -7.8  -3.14211   AGCCCCCCTTAGTAA         GGGGGGAACCGG ATT CGGGTGTCCCCC         TTACTAAAGGGAAGA  59 234
JTM80_RS11640 2831239 .. 2831264 -  -4.7  -3.85698   GCGTGCGGCGAGAAA         CCAGCGC TGATATCGGCGT GCGCTGG          CAGTTTGAGGTGATG  59 443
JTM80_RS11625 2828024 .. 2828038 -  -4.2  -2.56743   AAAGTTTATATCAAG               TGGCTA GAT TAGCCT               TAGCGATCGCTCCTT  44 138
JTM80_RS11620 2826627 .. 2826638 -    -3  -3.37188   AGCCAGGTCAAAAAG                CTAT AGGT ATAG                 TCATCTAATCGAGTT  47 78
JTM80_RS11615 2826399 .. 2826412 -  -2.4   -3.4878   CGATATCACAATCAA               CATC ACAACA GATG                CAAGATATAGGCTTG  46 14
JTM80_RS11585 NONE
JTM80_RS11580 2810556 .. 2810567 -  -2.2  -3.50853   GGGGCCCAATGAGAA                CCTG ATTC CAGA                 GTATCTGGGGCAGAA  47 194
JTM80_RS11570 2808634 .. 2808644 -  -2.4  -4.21351   AAATACGTCAACAAA                 TGGG CCG CCCT                 ATGCGACCTGGCCCG  59 347
JTM80_RS11560 2807297 .. 2807318 -  -2.9  -3.31461   CACGGAGCGCTAGAA           CTGCCCG CCATTTTT CTGGCAG            GGGGCGCAGGGCTGC  45 354
JTM80_RS11550 2805402 .. 2805412 -  -2.4   -5.0133   GATCCGGTTAAAAAA                 GCGC ATA GAGC                 CTCATCGAGGGGGAG  70 27
JTM80_RS11545 2804592 .. 2804607 -  -3.2  -5.00616   TGCGTCGTGAAAAAA              CGCG GGAATTTG CGCG               TGGTGATCGAGGCGT  73 46
JTM80_RS11510 2787095 .. 2787118 - -16.8  -3.14564   GCATGTTTTGACGAA          GCCACAGCAC GGGT GTGCTGTGGC           TCTTTTTTGTAGGAC 100 386
JTM80_RS11500 2784726 .. 2784739 -  -9.5  -3.31322   GGGAATCTCTCAGAA               GGGGC CTGC GCCCC                AAGACAGAGATTCCC  70 78
JTM80_RS11495 2784067 .. 2784083 -  -2.9  -3.29096   CCGAGCAATGAGCAA              TGGTCTG GGC CGAACCA              TCGTTGGCCTTGCTG  46 50
        chlP 2782390 .. 2782434 - -16.5  -3.18264   TTTGGGACTTACGAA GCTGGACAGTTTCTCGCGGGC TGT GCCTGCGAGAAATTGTCCAAA ATCCAGAAAGTCTAT 100 79
JTM80_RS11465 2778919 .. 2778931 -  -4.8  -3.10701   CAAAGACTCATCCAA                GCCA CCACC TGGC                TCGATTGACAGGGTT  48 5
JTM80_RS11460 NONE
JTM80_RS11455 2774863 .. 2774880 -  -2.7  -3.71527   TTCTAAGTATGCAAA             TATGCCT GTGA ATGCATA              TTCGGATGAAGAATA  52 56
JTM80_RS11450 2774289 .. 2774320 -    -6  -5.39721   TCATTACACAAAAAA     CGGATG-CC-AGGA GAAGAG TCCTTGGGCATCCG      TTTGTTTTTGGTAAA  95 97
JTM80_RS11445 NONE
JTM80_RS11440 2770490 .. 2770500 -  -3.2  -2.90496   TGGGGTTTTAAAGCA                 CAGC CTA GCTA                 TTTGCTGACAGGGCT  42 23
JTM80_RS11435 2768850 .. 2768868 - -13.2   -3.5771   AAAAATCCCCCTAAA             TCCCCCTT AAT AAGGGGGA             CTTCCGATCCAGTTC  86 250
JTM80_RS11430 2767990 .. 2768027 - -12.8  -4.60255   AGAATGTCCTAAAAA   TATAAGGATGGGCGGC CGGTGC GCTGCCCATCCTTATG    CCAAGAATCATTACT 100 258
        gltB 2761426 .. 2761439 -  -2.3  -2.78715   AATGCCCTGATCACA               GCCCT TTCC AGTGC                CTCCAGCGGTTCCTA  39 84
JTM80_RS11415 NONE
JTM80_RS11410 2759071 .. 2759081 -  -3.2  -4.22652   CCACACCATCGAAAA                 TCGC GCC GCAA                 AACTGCCCGACGACA  60 524
JTM80_RS11395 2756096 .. 2756112 -  -5.1  -5.26316   CCAGTGCAGAAAAAA              CGCATCA GCG TAACGCG              CCAATAATCACAAAT  86 158
JTM80_RS11380 2753055 .. 2753069 -  -3.5  -3.18681   GTGGAAGCGCACCAA              GCG-GG CCGG CCACGC               CTACGCCGAAGGCTC  45 502
        hppD NONE
JTM80_RS11335 NONE
JTM80_RS11330 NONE
JTM80_RS11325 2742002 .. 2742015 -  -8.1  -2.80499   TAATACTGTAACAAT               CCTGC CGGG GCAGG                GGGAGGTGGGTGAAC  59 97
JTM80_RS11320 2741541 .. 2741569 - -15.3  -3.84451   CGCTGCAAAGTGAAA        GCTCGACCGACCC ACC GGATCGACCGAGC        TAGAACCCAGAAAAC  95 77
        mutY 2740230 .. 2740243 -  -2.3  -3.61398   TGGGGCGCTGAACAA               CGGCA AGAC CACCG                ATTCCCCTGCCCCCC  47 180
JTM80_RS11300 2735071 .. 2735107 -  -7.9  -4.09243   CAGACGCGCTGAAAA    CCGCCGCCGAACGTTTG CTG CAAAAGCTGGGCGAAGG    CGCAGTATTCCTCGG  71 510
JTM80_RS11290 NONE
JTM80_RS11285 2728607 .. 2728625 -  -4.6   -5.0538   GCCCATCCTAAAAAA             GATATCAA ATT TAGATATC             GAATAATTCTGGACA  76 88
JTM80_RS11280 2727382 .. 2727410 - -13.9  -5.75342   TTTCTGCAAAAAAAA        GAGGCGAGAACGC AGC ACATTCCCGCCTC        TGTTTTGCTGTGCAA 100 213
JTM80_RS11270 2725207 .. 2725226 -    -2  -4.28049   CGCAAAACCCCAAAA            TTACCCGC AGCA GCGGCTAT             GTGCCTGTGGCTCAG  62 406
         mfd 2714042 .. 2714056 -  -2.8  -5.27779   CTCAAGATCAAAAAA               TTGAGC CTG GATCAA               TCCAAATATATTGAT  80 466
JTM80_RS11230 NONE
JTM80_RS11225 2712289 .. 2712300 -  -5.8  -2.90496   TCCCGCGCTAAATCA                GGCA AAAC TGCC                 CTTTTCCCTCGGCCT  48 447
        hpxO NONE
        uraH 2705954 .. 2705966 -  -4.7  -3.62096   CTCTATTAGCCTAAA                CCCCG ATA CGGTG                GTGAAGACCTGGCTG  53 180
JTM80_RS11160 2691913 .. 2691930 -  -2.7  -3.82262   AATTGCAACCAAGAA             TTGCAAC CAGC ATCGCAA              CCAGGGATTGCAACC  54 71
JTM80_RS11155 2690330 .. 2690352 -  -3.4  -3.60792   CTTGCAAGGGGCAAA           CCTGCAAG GGGCAAA CCTGCAAG           GGGCGGTCTTGTCCT  49 515
JTM80_RS11145 2689162 .. 2689183 -  -5.7  -3.63569   CCAATCCCTGAAGAA           GCGACCGCC ATCG AGCGGCAGC            GGGCGGAAGAAGAGC  55 221
JTM80_RS11105 2679722 .. 2679732 -  -6.8  -2.71712   GCGGGTCGGGCAAAT                 CAGC GAG GCTG                 TTGTTCTGATGGGGT  53 455
JTM80_RS11100 2677411 .. 2677422 -  -7.2  -3.47078   CAGTGCAGAGCAGAA                GGGC GATC GCCC                 CCGGCAACAGCACGT  62 158
        nagA 2676062 .. 2676073 -  -5.8  -3.39936   ACGGAAACGCTAGAA                CGAC GCTA GTCG                 CGACGATGCGAGGGC  57 74
JTM80_RS11080 2668482 .. 2668502 -  -4.5  -3.09516   GGCGGGATTACCGAA            GCGATCGCC CAG GACGTGCGC            GACCTGTCCACGCAG  47 202
JTM80_RS11045 2659336 .. 2659347 -  -2.2  -3.84587   ATCAGGTAAAGATAA                GCTGC TAA GC-GC                CGATACCTGACCCCT  53 62
JTM80_RS11040 2657794 .. 2657810 -  -2.2  -4.42743   GATAAATAAGATAAA              GCAAGA GTCCT TCATGC              CTCAGTAGCTTTACT  60 67
        ntrB NONE
JTM80_RS11030 NONE
JTM80_RS11025 2653933 .. 2653950 -  -9.1  -2.64155   TCTCCCTCAAACTCA             GCCCACG TCAT CATGGGC              ATAGCGGTGATACAG  61 5
JTM80_RS11020 NONE
JTM80_RS11015 2649325 .. 2649341 -  -4.3  -3.96148   CCTGTCGAGGACAAA              CCTGTCA GGC CGTCAGG              ATTTGCATTCAGAGG  59 314
JTM80_RS11010 2648502 .. 2648516 -  -4.2  -4.16146   AAAAGATCCTCAAAA               CGTGTG CGT CAAACG               TGTGCGTCAAACGCA  63 197
JTM80_RS11005 2646401 .. 2646426 -  -5.4  -3.72695   AGGGGTTGTAGTAAA         CTCGTTAACC AATAGG GGCTGACGAG          TGTGGAGACCTGCAT  59 162
        prfC 2644129 .. 2644140 -  -7.2  -3.03439   AATACGGAAATTACA                CGCG ATCG CGCG                 GTTATTAGGCTAAAA  59 64
JTM80_RS10990 2641145 .. 2641191 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 456
JTM80_RS10950 2631648 .. 2631658 -    -4  -3.65832   AAATTTCTCAAAAGA                 TTTC CCA GAAA                 AGTTTCAGGGCATCT  54 127
JTM80_RS10945 NONE
JTM80_RS10940 2631357 .. 2631381 -  -8.6  -4.48713   CGTACCAACAAGAAA          GCCCCTAACA GGAAG CGTTAGAGGC          TTGATACATAAGGCT  82 47
JTM80_RS10925 2627992 .. 2628002 -    -4  -3.41745   TCTGGATAAGATCAA                 GAAT GAC ATTC                 AGCCTTGGCAAGCTC  49 408
JTM80_RS10910 NONE
JTM80_RS10905 NONE
JTM80_RS10900 NONE
JTM80_RS10895 2619519 .. 2619558 -   -13  -3.61889   TAAAAAGGGGGGAAA  CCGCCTTAAAGTCCCCCTT TTG AAGGGGGA-TTTAGGGGGG  TTTTGCACGCTTTGC  83 504
JTM80_RS10885 2616716 .. 2616762 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  54 242
JTM80_RS10870 2612038 .. 2612073 -  -6.7  -2.67386   AAAAGGGACGAGAAC    CGGAATGGGGGGACG CGATTT CACACCCCCACGCCG     CGAATCGAGCAATCG  52 10
JTM80_RS10865 2611446 .. 2611460 -  -2.7  -4.85782   CCCCGCAAAAACAAA               TCGGC TTCCG GCCGT               TTTCTGTCAATTTCG  70 68
JTM80_RS10860 NONE
JTM80_RS10855 2609604 .. 2609630 - -11.6  -3.28712   TTGGGTTTTGGATAA         TTTCTCCCAGGC GCA GCCCGCGAGAAA         TTATCCAACTGCGTA  76 96
JTM80_RS10850 2608499 .. 2608513 -  -2.7  -4.38712   GTGAGGGGTACAAAA               GTGGG ATGCA CCCTC               CAAATTACCTCGTGC  61 124
JTM80_RS10845 2607004 .. 2607016 -  -3.3  -4.07568   CGCGGCGGCTTAAAA                TTCCG CGC CGGGA                TATTCCCGAAATTTT  56 165
JTM80_RS10840 2604918 .. 2604939 -  -2.3  -4.60041   ACGCAGTGGCAAAAA           CCAGAAG TTAGGGCG CTTCTGA            TGATCCTATCGCGAT  65 11
JTM80_RS10835 2603580 .. 2603595 -    -6   -3.1552   GCGCATCTACGAAGA              CGTGCG CGGC CGCCCG               CTCTACACCCTGGCC  52 224
JTM80_RS10820 2598989 .. 2599006 -  -4.8     -3.24   ACTATTCCAGAAAAG             CCTGCG AATTTA CACAGG              GTAAAACTCAAGCTG  49 392
JTM80_RS10805 2596387 .. 2596405 -  -6.6  -3.51096   GAAAGAAAATTAACA             GTCGGCAG TCG CTGCCATC             CCTTTCCAAAGAGGG  62 163
JTM80_RS10800 2594934 .. 2594945 -  -7.2  -2.57211   ATCGTTGCCGACAAT                GGCG GCAT CGCC                 GAATACATGACCCCC  50 416
JTM80_RS10790 2591984 .. 2592001 -  -3.3  -2.63723   GCGCTACGAAGGAAG             CTGCCAG AAGC CCCGCAG              ATGCTCGACTGGCAA  40 123
JTM80_RS10785 2591375 .. 2591385 -  -3.2  -3.32803   ACCAGATTAAACACA                 GGAA CCC TCCC                 AATCCATGAAGCAAA  46 127
JTM80_RS10780 2590739 .. 2590770 -  -9.5  -3.14132   GGTCTTTGCCACCAA      CGAGCCATCGCTCA ACCTG TG-GCGATCGCTCG      GCTTTTCCACTCTTG  64 407
JTM80_RS10770 2586547 .. 2586557 -  -3.2  -4.28656   ATTGAAGATCGAAAA                 TCGA AAA CCGA                 AAATCCCAAGAGCGT  61 115
JTM80_RS10755 NONE
JTM80_RS10750 NONE
JTM80_RS10725 2576126 .. 2576149 -  -7.4  -3.33711   TAGGTAGAAAGCTAA          CTAAGGGCAA TTGC CTGCCCTTCG           AATGCCCGCGAGATA  61 449
JTM80_RS10720 NONE
JTM80_RS10715 2567138 .. 2567171 -  -6.8  -3.57144   CTGGCGATCGCCAAA    CGCTGCATC-GACCTC CACG GCGGTCAGAT-CAGCG     TGGAAAGCACCTTGG  60 265
         bcp NONE
JTM80_RS10695 NONE
JTM80_RS10690 2559693 .. 2559704 -  -5.8  -3.86897   CGCAGGGGCGACAAA                CGCT TGAC AGCG                 AGGCGGATCAGCCAT  64 33
JTM80_RS10685 2556502 .. 2556529 - -11.4  -4.04318   TTGATATAGGACAAA        CCTCCGATGATCC GTC AG-TCATCGGAGG        TTTTTGTTTGACTGG  86 269
JTM80_RS10675 2554310 .. 2554329 -  -7.1  -2.87132   TGTGCGGTTTACAGA            GCAGCAG CTTGCC CTGCCGC             GATCGCCCCTTGACT  53 411
JTM80_RS10645 2549185 .. 2549211 -  -6.4  -2.65271   GAGAATTGGACATCA         GCCCCAGCAGCC TAC GGCCGCCAGCAC         GTCATTCCGAGCTTA  50 79
JTM80_RS10640 2547680 .. 2547692 -  -7.7  -3.14132   GCCGCCGTCGATCAA                CATCG TGC CGATG                ATCGATGTGATTTTT  57 408
JTM80_RS10620 2544667 .. 2544706 -  -4.3  -3.71552   AGGGGAGCAAGAGAA  GCTTGAAGTCCCTCTCCC GCCCT GGGAGAGGGATTT-AGGG  TGAGGGGGATCGGCA  56 60
JTM80_RS10615 NONE
JTM80_RS10610 NONE
        secD 2541493 .. 2541503 -  -2.4   -3.6053   TGCGGCAGAAATGAA                 CGGC AGA GCGG                 AGCCTTGTTTCGAGA  47 56
        secF 2540354 .. 2540380 - -15.2  -3.31461   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCTGCGAGAAA         TTGTCCAAAACCCGA  90 116
JTM80_RS10595 2539644 .. 2539658 -  -3.5  -3.52204   CGATTTCCAAAGCAA               CCATG CGAGC CACGG               GCATTGTGCTGGTAT  52 127
JTM80_RS10585 2539039 .. 2539063 -  -9.9  -4.03234   TCGCGTCTATACAAA          GCGAGGGGGCA CAA TGCTCTCTCGC          TTCTTCTTATAACGG  80 131
        lipB 2534771 .. 2534812 -  -3.8   -4.1721   AGCGATATGGCAAAA GCTACTATTGCTTAAACCA GATCT TGGCTTCAGCAAT-GCTGC GGAAATTTGAGAAAC  61 89
JTM80_RS10565 2533192 .. 2533222 -    -4  -4.07877   GGATGCCATAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  59 53
JTM80_RS10560 2532003 .. 2532016 -  -2.3  -2.53346   CGACAAAGGCAAGAC               GCATG ACTT CAAGC                TGCTCAAACGAAGTC  38 378
JTM80_RS10545 2529150 .. 2529160 -  -5.4  -3.04715   TACTCTCGGCAAAAT                 CTCT TAT AGAG                 TTCCCCTTAGATGGA  51 236
JTM80_RS10540 NONE
        cas6 NONE
        cas3 NONE
      cas8a1 NONE
JTM80_RS10520 2522924 .. 2522937 -  -2.5  -2.52623   CTTGTCTCAGAACAG               TTAAT GGAA ATTAA                GTTTGACACTCCCCT  38 163
       cas7i 2521858 .. 2521870 -  -4.8  -2.81118   ACAATCTAGGTAAAG                CTGC ATTAG GCAG                GCACCTCCGTTTTCA  45 18
        cas5 2521080 .. 2521090 -  -2.4  -5.00616   TCGCCCCTCAAAAAA                 TCGC CTG GCGG                 CATCTGAGGTGTTGA  70 91
        cas1 NONE
        cas2 2518654 .. 2518664 -  -6.8  -3.67611   TCCAGCTTAAGACAA                 GGCT TTT AGCC                 GATAGACTGCCATGC  64 69
JTM80_RS10495 2495266 .. 2495295 - -15.7  -3.75378   AGGGCGATAATACAA       CCCCCCTCGGATG TAAT CACCCGAGGGGGT        GTTTGTTTAAATTAC 100 53
JTM80_RS10460 2486636 .. 2486646 -  -2.4  -2.79518   GCAAAACCCTCAAAT                 TCGG AAT CCGT                 CTCTCTTTGGGCAGA  39 229
JTM80_RS10455 2485175 .. 2485191 -  -4.4  -3.80733   GGGATTGTAGAAGAA              CTTCGC TAGGC GCAAAG              TAAAGTTTTGCGAAA  56 213
JTM80_RS10450 2483089 .. 2483105 -  -2.2  -2.57881   GAACTTGCTGAGAAG              TGGTCA CCATT TGCCCA              GGAGTTGTGGCTAAC  39 76
JTM80_RS10445 2482314 .. 2482331 -  -3.4  -3.82117   GGCAGCCATAAAATA             CTACGG AATATA CCGTAA              TTTGCAAGCGTTTGA  54 109
JTM80_RS10440 2481930 .. 2481961 -  -8.1  -3.44672   CTGCATTAAAAGAGA      CGATTCTGAGTAG TTTGCG CTACCCAAAACCG       CTTAATGCCTACTGA  65 46
        argH NONE
JTM80_RS10430 2479439 .. 2479455 -  -5.1   -2.7173   ATACATAGCAAATAC              GAGATCC GCA AGATCCC              TGACTAACCTTAGGC  48 103
JTM80_RS10400 2472105 .. 2472123 - -13.2  -3.55548   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTCAGGCGGTTTC  86 239
JTM80_RS10395 2470441 .. 2470451 -  -3.2  -3.72051   GTCAAGAATTCCAAA                 GGTC TAG AACC                 TGATCCTGAAGTCGT  52 253
JTM80_RS10390 2469476 .. 2469513 - -14.3  -4.57341   AAGCTGTGCCAAAAA   CTAAGGTGATGCCAGTG CGAA CACTAACATCACCTAAG    AAAAAGAAAGAACGA 100 222
JTM80_RS10380 2466246 .. 2466275 -  -5.1  -2.90496   CGCCGCTGCAAATTA       GCAGCA-ATTCC CTAGTGT GGAATGTGCCGC       AGGAGGTGCTGAGTA  46 440
JTM80_RS10360 2461633 .. 2461650 -  -4.7  -3.57144   TGCGCGATGCCGAAA             CGCCGCG CCTG CTCAGCG              GGTTGGAGAGCCAGC  53 256
        hemL 2459233 .. 2459244 -  -5.8  -2.52464   CCCCGCCCCAAGTTA                TCGC CCCT GCGA                 GAGGAATGTGTTGCT  49 61
JTM80_RS10340 2458052 .. 2458086 -  -2.6  -3.63073   GACAGGTGGCAACAA     CGCTCCCCCTGCGTTG GCT CAAAGTCCGGTGAGCG     ATCCCCCCAACTCGC  47 482
JTM80_RS10325 2455317 .. 2455331 -  -3.4  -3.55815   AAATAGCTGGGTAAA               CCGCTG CAT CCACGG               ATTATGGCGTTTGCG  49 27
JTM80_RS10320 NONE
JTM80_RS10315 2451413 .. 2451435 -  -2.7  -3.00498   TACACTTGATAGATA           TGGCAGATA CGCTC TATCCGTCA           ATGCCGAGCCATCAG  42 47
JTM80_RS10310 NONE
JTM80_RS10305 2449512 .. 2449558 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 303
JTM80_RS10255 2438230 .. 2438242 -  -2.6  -3.69216   GCTTCAGGTAAAACA                CGCC CCGAT AGCG                CAACAAAAGTGCTGA  50 416
JTM80_RS10250 2437299 .. 2437309 -  -2.4  -3.04398   GGTGTGTTGCAAAAG                 CCGG GGG CTGG                 GGGTCATAGCTGGGA  42 231
JTM80_RS10245 NONE
JTM80_RS10240 NONE
        rlmD 2432679 .. 2432690 -  -4.4  -4.39002   AAACTTTTCAGAAAA                CTGT CAGA ACAG                 CCCATGTGCTTATTG  66 92
JTM80_RS10230 2432276 .. 2432301 -  -8.3  -3.95435   CGCTGCAAAAGAGAA         TCGCTGCACAG CAGG CTGCACAACGA          CTTTGAGAGATTGAG  72 104
JTM80_RS10225 2428552 .. 2428566 -  -2.1  -4.90296   AAAACTTTACAAAAA              GCACTC TCAA GAG-GC               GGATTATTGAGAATG  68 146
JTM80_RS10220 NONE
JTM80_RS10215 2426217 .. 2426231 -  -5.6   -2.8055   GACCCCAGAACAGCA               GGAGCA ATT TGCGCC               GATTTGTCCCGATGT  48 368
        chlG NONE
        trmB NONE
JTM80_RS10190 2419956 .. 2419972 -  -6.5  -3.62275   ATCGACCAGCTTAAA              GCAGAAG CCG CTGCTGC              CGCCCAACTCAAGAC  58 397
        hrcA NONE
JTM80_RS10155 2413136 .. 2413161 -  -6.7  -3.06796   CCCGATCGCAGTCAA         CTCTGGGCCGC CCAA ACGCCCCAGGG          GTTTGATGTGGAAAC  52 331
JTM80_RS10135 2410968 .. 2410989 -  -4.4  -3.87641   AAGACCTGGCAGAAA           CCGATGAG GTGCTG CTCACCGA            AGCCGCCGTTCACCA  59 143
        infC 2407649 .. 2407663 -  -4.9  -4.08767   TCTAGGTGTTCAAAA               GCCGC AGCAA GCAGC               GGGGCGCTATTTCTT  61 32
JTM80_RS10090 2402560 .. 2402572 -  -3.4  -4.67982   GGGGACTGAAGAAAA                GTCT ATCAA AGAC                CGGATCGATACATTT  66 152
JTM80_RS10085 2401882 .. 2401939 -  -9.2  -2.83915   TCGCTACAAAAAACG GTTCCCCGCAG-GTGCAGGAATGCTAC TTGGT GCAACACTTCTGCCCGCCACAGGGAAC AAAGGCTGATATTAA  62 88
JTM80_RS10080 2400608 .. 2400619 -  -2.2   -4.7497   TTTACTGATGAAAAA                CGAA CGGA CTCG                 TCACTGAAGCATGTG  68 401
JTM80_RS10070 2397105 .. 2397118 -  -8.1  -3.57263   ATCGCTATTTTGAAA               CCAGC GACG GCTGG                CAGATGGAATCGGTC  67 105
JTM80_RS10045 2390302 .. 2390340 -    -9  -3.80573   CCCATTAGCACCAAA   GAAGAACGAAAACCGAAA CCT CTTCCTTCTTCGTTCTTC   CTTTTTTCCCTACGT  73 35
JTM80_RS10040 2389914 .. 2389952 -    -9  -2.67161   AGAAAAACGAAAATC   GAAGAACGAAAACCGAAA CCT CTTCCTTCTTCGTTCTTC   CTTTTTTCCCTACGT  61 35
JTM80_RS10025 2385305 .. 2385323 -  -7.6  -3.33815   ATGCCTTTTAATTAA             GTTAATTA ACT TAATTAAC             TTAATTAACGGACTT  61 39
JTM80_RS10020 2384115 .. 2384155 - -10.6  -5.00339   ACGAAGAACGAAAAA  TGAAGAACGAAAAACGGA CTCTC TTCGTTCTTCGTTCTTCC  CTCTTCGTTCTTCCC 100 61
        gyrA 2378931 .. 2378943 -  -4.1  -4.36914   TTGGTTGGGAGAAAA                CATTC AGG GAACG                GATTGGGTGAACCGA  64 257
JTM80_RS10000 2375145 .. 2375160 -  -2.4   -5.0538   CGCTATCCTAAAAAA              CCCCGA CAAT CCGGCG               GATAATCCTGAACTG  77 402
JTM80_RS09990 2372225 .. 2372237 -  -6.2  -2.72344   CCTCAGCGGTAACGA                CGGG CGCGT CCCG                GCCTTCCCGGTCGAA  49 275
JTM80_RS09970 2370078 .. 2370105 -  -9.2   -4.4773   TGACATGAATGAAAA        GGGCGACTCTC TCGATTG GAG-GTCGCCC        TTTTTGCTGGATATT  86 59
        pabB 2363054 .. 2363064 -  -5.4  -2.73243   AGCTAGCTGTTAAAG                 CTAC TGT GTAG                 AATCACTAGGACTGC  48 86
         map 2361949 .. 2361979 -  -3.3   -3.1733   CGTGGCAGAAAATCA      TGGCGGAACCCTAG AATG CCACAGTTC-GCCA       GGTCAGGGCGCAGAG  45 256
JTM80_RS09925 NONE
JTM80_RS09920 2350475 .. 2350494 -  -3.4  -3.09116   TTCAGATAGAAATTA            GCCCCGCA GCGC TGCCTGGC             CTTACGCCTTCAGAA  44 35
JTM80_RS09890 2344542 .. 2344564 -  -4.8  -3.62572   TACGACCATGCCAAA           GCCTTGGG GCATTCG CTCAAGGC           TGACTATGAGGTGGA  53 422
JTM80_RS09870 2338715 .. 2338726 -  -7.2   -2.6961   TCAAAGAATAGGAAC                GGGC GATC GCCC                 CACACTCTCATTCAC  55 97
JTM80_RS09865 2336174 .. 2336196 -  -2.1  -2.56273   ATCACACCTAATCCA           TGCAAAAAA CCAGC TTTTTTGAA           CCGTATCTAGCTTCT  39 32
JTM80_RS09860 NONE
JTM80_RS09855 2332999 .. 2333016 -  -4.1  -3.12351   CGGGCGCAGATTGAA             CAGCG TATCAAGG CGCTG              AATCTGCACGACTAT  45 523
JTM80_RS09845 2330377 .. 2330389 -  -3.3  -5.36441   GTTGTAGATAAAAAA                CTCTG ACA CAGCG                TTTACGATTAACGCT  80 60
        rfbC 2329750 .. 2329768 -  -2.5  -2.64942   CCGATTAACAAAATT            GAGGTCAT GGGT AT-ACCTC             CGCCATTCTCAATGG  39 11
        rfbD NONE
JTM80_RS09830 NONE
        rfbB 2326407 .. 2326420 -  -3.9  -4.57569   CGATCGCTCTAAAAA               TGATT GTTA AATCA                AACAAAAAGTATTGG  66 101
JTM80_RS09820 NONE
JTM80_RS09815 2323614 .. 2323630 -  -6.5  -2.70354   TTTTTGAGAAAGGCA              CTCCCTT GAA AGGGGAG              AATATCAACTCCAAT  52 381
JTM80_RS09810 2322094 .. 2322107 -  -5.9  -3.64703   GCCGCGTTACCCAAA               GCAGC CTGC GCCGC                CAGATTGGGATTGTG  58 520
        secA 2316744 .. 2316779 -  -8.3  -4.82128   TCAGTAAACATAAAA    CCCAAAGCCCCTGCG CTTTTT CACAGAGTCTTTGAG     GTTTCATAAATTCAT  87 92
JTM80_RS09770 2313084 .. 2313105 - -10.1  -3.08032   TCTGCGCGAAAACCA           GGTGCCTGC CGAA GCAGTCACC            CTCAGCGCGATTGAA  66 496
        codB 2309550 .. 2309575 - -11.1   -4.2349   GCGCCACACCTAAAA         GCGCCACAAGA GATA CCCTGCGGCGC          TTTGACTAGAGTGTT  91 99
JTM80_RS09745 2309181 .. 2309216 -  -9.6  -4.85177   AAAGCACATTAAAAA    GCCGAGTCCTCCAGAGC TGA GC-CTGGGGCGCTCGGC    TGTTTGATTGGTTCA 100 60
JTM80_RS09735 2306764 .. 2306795 -  -7.8  -2.52464   CGTGGGCGCAATGTA      GGGCAGGGGCGATC GCCC GTTTGCCCGCGCCC       TTTAGGGCCGATAGA  55 27
JTM80_RS09725 2305340 .. 2305355 -  -6.8  -4.33582   CCTAATAACAAACAA              CACGCC AATA AGCGTG               CTACTGTCCATCACT  74 83
JTM80_RS09720 2304959 .. 2304969 -  -6.8  -3.67611   TCTACCCCAATATAA                 TCGC TAT GCGA                 AGCTCTGGCACCTCT  64 274
JTM80_RS09715 2304086 .. 2304098 -  -4.8  -2.55297   CCATTCCAAAGAGAG                CAGG GGTGA CCTG                TTAGGCGGCTGAAGC  44 217
JTM80_RS09710 2303084 .. 2303097 -  -2.3  -4.60924   GAAATTTTTGAAAAA               GCGCA GCCT TGCCC                CATCAGCCATCTTGA  66 198
JTM80_RS09695 2300828 .. 2300866 - -11.9  -4.59984   AAAAGGTATAGAAAA  GGTTGGCTTTTCG-GG-CG TTT CGACCTCGAAAAGTCAACC  TTCTTCTACGCATCA 100 225
JTM80_RS09685 2298844 .. 2298857 -  -2.3  -3.14522   TGAATCTACAGCGAA               TTCGG CTTT CCGAT                CCTGCATTGTCCTGG  42 140
JTM80_RS09680 NONE
JTM80_RS09675 2295930 .. 2295947 -  -4.1  -3.28712   TCTTGCCCTCCAGAA             CCAAACC CTAA GGTCTGA              ATCCTCAGATCACGG  48 30
JTM80_RS09670 2295196 .. 2295208 -  -6.3  -2.52676   GATTCCTCGAATCGA                TCAAG CTA CTTGA                GCCAATGGGTTAGGC  49 92
JTM80_RS09665 2293857 .. 2293884 -  -8.5  -4.88736   TATCAGCGACAAAAA        GA-GGGACGTGC GGTAG GCACATCCCCTC        AGGGAGTCAAGATAT  87 254
JTM80_RS09655 NONE
JTM80_RS09650 2290259 .. 2290280 -  -3.8    -3.727   TGGAGTACAGTTAAA           GACTG-TGA GTAAG TCAGCAGTC           ATCCCTCATGCTGAT  54 228
JTM80_RS09640 2288264 .. 2288282 -    -3  -4.63184   AAGCCATCTGAAAAA             CCGTGCTG TAT CCGCACAA             GCCACGCTGAAACAT  66 258
JTM80_RS09635 NONE
JTM80_RS09620 2281127 .. 2281141 -  -3.5  -2.55551   CAGAATCGGAATGGA               GTGCA TCCAG CGCAC               CGCCTATCTTAAATG  42 84
JTM80_RS09610 2279530 .. 2279553 -  -2.4  -2.55351   CCGTGTGACAGGAAC          GGTTTTCCTA GCCT TAGTAAACCC           AAGATCCCGCCCCTA  38 153
JTM80_RS09605 2279094 .. 2279138 -    -2  -2.62311   AGCAGAAGCAACCCA TTGGCCTGTTGCCGATCCGCC ATAG GGCGG-TCTGGAACAGGGGAT ATCTTGCGTTGGGCG  39 161
JTM80_RS09600 2277813 .. 2277824 -    -3  -5.56263   ATGAGAAAAGAAAAA                TAAG ATAA CTTA                 CCGAGTTGAACCGTT  86 77
JTM80_RS09595 2276401 .. 2276411 -  -5.4  -2.73875   GCGTTCTCAATATTA                 TCCT TGC AGGA                 GTCGCGCTGAATCTT  47 406
JTM80_RS09585 2274538 .. 2274560 -  -9.8  -2.72144   TGAGTGGGGTGAAAG           TCCCTCGCCC TTT GGGAAAGGGA           GTCAGGGTGAGGGCT  65 94
JTM80_RS09565 NONE
JTM80_RS09560 2269734 .. 2269780 -  -3.7  -3.22476   ATCATTTATCAGGAA GCTCAGAGCCAATCATCCGAGA AATT CCGCAAAGGACTGGCTC-AAGC CTTTGGCAAATCTAC  48 190
JTM80_RS09555 NONE
JTM80_RS09550 2267435 .. 2267457 -  -2.7  -3.21595   AAGCTGGAGTACGAA          GAGTGGC-GA TCGC TCAGCCAGTC           CATTACTGATGCCAT  44 166
JTM80_RS09540 2265707 .. 2265725 -  -8.8  -3.86346   CGACTGCTCGACAAA             GCAGCAGC CGT GTTGCTGC             TGGTTGTGGCGGGAA  72 414
JTM80_RS09525 2264523 .. 2264533 -  -2.4  -3.47806   TTTTATATCAAAAAT                 TGGC CCG GCCG                 TGTCTTACACAGCAC  46 30
JTM80_RS09520 2263652 .. 2263685 - -12.6   -3.6053   CCGCTTACAAAGCAA     GAGTGGATAAAGCG ATTTTG CACTCTATCCACTC      GCGGCAGCTTCATAA  83 123
JTM80_RS09515 2263259 .. 2263272 -  -2.4  -3.17146   GCTGGGTAGAAGACA               CGAT AGGAGA ATCG                GGGGGCTAGAGCTAG  42 112
        ppk1 2261033 .. 2261050 -    -2  -2.72511   CTCAGGTCTGGAAAT             GCC-AGA TCGAG TCTTGGC             TCTGACCCATCCCTC  39 117
JTM80_RS09505 2260045 .. 2260055 -  -4.6  -2.75975   CCGCAAGACAGATCA                 GGGC AAG ACCC                 CACCCACACCATCAC  45 54
JTM80_RS09500 2259493 .. 2259503 -  -4.6    -3.136   CCAAGATTGAATAGA                 CGCA TGA CGCG                 GTAAGCCAGCGGCTT  48 351
        dnaK 2256483 .. 2256500 - -10.5  -4.79352   TTAGGCACAAGAAAA             GGGGAGC GATC GCCCCCC              TTTATTCCGGTTAAA 100 87
JTM80_RS09485 2254657 .. 2254685 - -19.7  -5.25803   AATGCCGACAAAAAA        TCAGGGGTCGGAA ACC CTCCGACCCCTGA        TCTGATGCCTGATTT 100 114
JTM80_RS09475 2251889 .. 2251902 -  -3.1   -2.7624   AGCAAAAGTAGACCA               GTTCC CGCT AGAAC                CCGCGAGCCGACTGA  41 19
JTM80_RS09445 2246439 .. 2246451 -  -4.9  -3.03243   AGCCATGTTTCAAGA                TTACT CCA AGTAA                AGAAAGCTCAAGAAA  48 33
JTM80_RS09440 NONE
JTM80_RS09435 2245329 .. 2245384 - -10.1  -2.80096   AAGAACAGGTAAGGA GGATTTTGGGTTTTGGATTTTAGCAGG GCAT CCC-CTCAA-TCCAAAATCCAAAATCC CCACTCCAAAATCCA  65 317
JTM80_RS09420 2242313 .. 2242323 -  -3.2  -3.50853   CGCGCTGAACCATAA                 TCCC CCC GGAA                 TTTGCATCACCATCA  49 347
JTM80_RS09410 NONE
JTM80_RS09400 2234752 .. 2234771 -  -3.6  -4.25873   GGTGGACAAAAAATA            CGAAGACGA ACA TCGCCTT-G            TTTAATCAACGGGCA  61 93
JTM80_RS09395 2234057 .. 2234070 -  -2.3  -3.05343   CGCAGACGCGCAACA               GGCTA TCGA TCGCC                TGCACTTGCTGCACT  41 194
JTM80_RS09375 2231304 .. 2231320 -  -4.3  -3.28924   CAGCGTTTGGGAGAA              CTGGCAC GAG GCGCAAG              GCCAGCGCTCTGCTC  50 115
JTM80_RS09370 2230859 .. 2230871 -  -2.6  -3.99374   GCGTAGCAACAATAA                GGCA AACAG CGCC                AGATCACCAGGCAAG  55 29
JTM80_RS09365 2229369 .. 2229382 -  -3.1   -5.1523   TTCACAACACAAAAA               CCAGGT ACG ACC-GG               ATACGAAGAATCATA  76 387
JTM80_RS09360 NONE
JTM80_RS09355 NONE
JTM80_RS09350 2224490 .. 2224502 -  -6.9  -3.17763   GGCACACCCGACGAA                CCCGC GCC GCAGG                CTACCCCCGCCAGCC  56 213
JTM80_RS09330 2219536 .. 2219555 -  -4.4  -2.71712   GTGGGGGTTGCAAAG            TGGATA-AC TTA GTGTATCCA            AAAGCGAACAATTTC  45 209
JTM80_RS09325 2218765 .. 2218788 -  -3.8  -3.95375   ACCTAATAGAAAATA          CCTGCGAAAC GTTG ATCCCGCAGA           GACACTGACCCACAG  57 78
JTM80_RS09320 2217599 .. 2217612 -  -5.3  -3.06183   CTCACCGTCAGGCAA               CGTTT GCAG AAACG                TTCGCAGCCTTCAGC  51 4
JTM80_RS09315 2216114 .. 2216132 -  -5.3  -2.63631   CTAACCTCTACAGGA            CTGATCGC AACT GCG-TCAG             TCCTACCCTAAATGG  47 33
JTM80_RS09310 2214305 .. 2214320 -  -7.6  -3.32993   TTATCCATAGATCAA              TGCATG AATC CATGCA               GTAGAAGAGAATAGA  61 77
JTM80_RS09305 2212311 .. 2212356 - -16.1  -2.80583   GATTAAAAAACAGAT CCTGA-ACCCTGCGCCGCCCGC GCA GCCGGCGGCGCAGGATCTTTGG GGTTTATGTTTATTA  88 125
JTM80_RS09300 2211648 .. 2211659 -  -5.8  -3.31144   CTGGCATGGCGAGAA                CTGG GAGT CCAG                 CGTCCACACTAGCAG  55 137
JTM80_RS09285 2207390 .. 2207401 -  -5.8  -3.76224   CGGCGAGGCACTAAA                CAGC TTTC GCTG                 CCTCGCAGACCCAGC  58 393
JTM80_RS09235 2198350 .. 2198364 -    -7  -3.83026   TCTTGCGAGACGAAA               CGGGCG AAA CCCCCG               ATGAGTCTCTCCGTC  66 92
        obgE NONE
JTM80_RS09215 2193709 .. 2193724 -  -3.9  -3.53012   GTCTTTTCTCTGAAA              GCCCG GTACTA CAGGC               CTCACTAACGCTCTA  52 30
JTM80_RS09210 2191986 .. 2191999 -  -8.1  -3.05343   GGTACATTCCGAAGA               GCTGC CGGA GCAGC                CACCGGGTCCCTGGG  62 57
JTM80_RS09195 2188724 .. 2188750 -  -2.2  -3.05521   ACCACAGCTTTAACA        GCGGGGACTAG CGGGTT CT-GCCGCCGC         TATTGCGACCGCCCC  42 6
        prmC 2187309 .. 2187321 -  -3.3  -3.76402   ATGCGACTGAGGAAA                TGCCG CTG CGTCA                GAATGCGATCGGTGG  52 518
JTM80_RS09180 NONE
JTM80_RS09175 2185013 .. 2185036 -  -6.8   -5.0133   GAGTGTCCCAAAAAA          CCTGATTC TGTGGATG GAATCAGG           CTGAGAGAAGTGATA  86 193
JTM80_RS09170 2181219 .. 2181244 -    -9  -5.40072   TCTTGCCCAAAAAAA         GCCTCGGC GGAGAATTAT GCCGAGGC          TTTTCTATTCAACGG 100 141
JTM80_RS09150 2176250 .. 2176261 -  -2.2  -4.07885   GATTTTTGGGCAAAA                GAAG CCAA CCTC                 AACCTGCTGACGCTC  56 214
JTM80_RS09125 2169646 .. 2169664 -  -6.7  -3.54307   AATATGCTCCTCAAA            GCCACGCC GCAA GG-GTGGC             TTTTTTGTTGGTGGT  62 247
JTM80_RS09095 NONE
JTM80_RS09090 2162090 .. 2162109 -  -4.2  -4.72272   CCCCTCCAGCAAAAA            CCCGCC TCAGCCCC GGCGGA             TCTCCCGCGCAACGC  75 12
JTM80_RS09075 NONE
JTM80_RS09070 2154900 .. 2154927 -  -4.2  -2.50622   ATAGAGGGGACGAAT        GTTTTAGCAGAA TAGA TTCCACTTAAAC         CTACAGCTTTGGTCT  44 53
JTM80_RS09065 2152969 .. 2152982 -  -9.5  -4.29073   GAAGAACTGAACAAA               GCCGG AAAC CCGGC                AGCGTTGTGATTTGA  87 81
JTM80_RS09060 2152460 .. 2152500 - -13.4  -5.19916   AAAACAGGCAAAAAA  CAGCAGTGGGGAAAGAAA CTGGC TTTCTCACCCCACTGCTT  AAAATTTATTTGCCA 100 176
JTM80_RS09040 2148579 .. 2148604 - -12.5  -4.15044   TTTTCCTGCAAGAAA         CCGCCGCTTGG GTTG CCAGGCGACGG          TTTCTTAATTCTCAA 100 198
JTM80_RS09025 2144336 .. 2144383 -  -8.7  -3.14463   AACTTTGGCGAGCAA TAAGCAACTGGCGATCGCACGCT CCCC AGC-T-CGATCTCCAACTGCTTA CTGCCTGCTTAACAG  65 89
JTM80_RS09020 2143632 .. 2143644 -  -5.5  -3.58343   CTGATTATCTCTAAA                CTCCC TCT GGGAA                TTGACATTGACAATC  55 366
JTM80_RS09000 2137654 .. 2137685 - -16.6  -3.74693   GGGGACTTTACCAAA      GCGCTGCGCGATAA CGAC TCCTCGCGCAGCGC       TTTTTGGGTATCAGT 100 113
JTM80_RS08985 2131170 .. 2131204 -  -2.6  -4.07786   GACAAAATCGACAAA     GCAGAGGTAAGCAGGC GCA ACCCCCACTCCTCCGC     TACTCCTATCGCCTC  56 280
JTM80_RS08970 2127977 .. 2128001 - -10.8  -4.96501   TTTTACAAAAAGAAA          TCCCTCGCTT GAGTG AAACGAGGGA          TGAGTGATTCAGATT 100 67
JTM80_RS08965 2125720 .. 2125758 -  -8.1  -4.37199   ATCATAATCAATAAA  GCGAGCCTG-TGGCACGG TTCT CCCTACCCCCAAGCTCGC   TACTGTGTTCTATTG  79 102
JTM80_RS08960 2124765 .. 2124790 -  -6.1  -3.55622   TTGAAGTCGTTTAAA         GCCCGACTTAC TCCA GCAAATCTGGC          TCTTCCCACACGATT  59 7
        ileS 2120034 .. 2120051 -  -2.5  -4.07568   CTGCGCCGCTTAAAA             CTCTCCC TCTA GGGCGGG              AATGCAGCGTTCGCA  55 2
JTM80_RS08945 2119730 .. 2119746 -  -3.7  -2.62396   TAGGCGGTGACATGA              CCGTTTT CAG AAAATGG              CTCAGGCGGGATTTG  43 21
JTM80_RS08940 2119277 .. 2119291 -  -5.6  -3.64822   AGTCTGGCACCTAAA               GTCTGG CAT CCAGCC               GATTTGATCAGTTGT  56 171
        infB 2115685 .. 2115698 -  -3.9  -4.00234   TAATTAAGACAATAA               GAAAA AATT TTTTC                AGATGTCTTCATTAA  59 111
JTM80_RS08925 NONE
        recR 2110242 .. 2110276 -  -4.3  -2.71483   AGAGCGGCTGAATGA    GGCGATCGCCCCTGAT CTCG ATCAGATT-GATCGCC     AGATGGAAGAATGGC  43 369
JTM80_RS08890 2106351 .. 2106371 -  -2.4  -4.67755   ATATTGAGCTAAAAA            CAGCGCGA TCGGG TGGCGCAG            GCGGGCAGAACGTGA  66 512
JTM80_RS08730 NONE
JTM80_RS08725 2086379 .. 2086401 -  -2.6  -4.24204   TATCGAGATTGAAAA           CTACACCGTC AAG GACGAGACAG           AGTTTTATGGTGCAT  59 359
JTM80_RS08715 2084661 .. 2084673 -  -3.3  -4.15508   AACCAAGGTTGAAAA                GTCGG AGT CCGAA                TTTTCGGTAAAGGGA  60 267
JTM80_RS08685 2074621 .. 2074654 -   -11  -3.69621   ACCCACAAGTGTAAA     GCCCGGAGCGAG GCGAAAGGAT CTTGCTCCGGGC      TAGATTTTTGTCTTG  82 66
JTM80_RS08665 2069901 .. 2069916 -  -2.4  -3.93057   CGCAAAATCAGGAAA              GCCGCC GTCA GATGGC               GCTGGAAGCTGAAGC  53 379
        psbA 2067378 .. 2067397 - -12.8  -4.62069   TCCCCACGCGAAAAA            GCGCCCCC CGCA GGAGGCGC             TCAGAGACTAGCTAA 100 89
JTM80_RS08650 2066103 .. 2066119 -  -2.9  -5.03314   CGGATTGTGAAAAAA              TCTGACC TGT GGGCAAA              GTCAGGCGCAGCGCA  73 122
JTM80_RS08645 2065326 .. 2065369 -  -4.4  -3.30771   GCAGACTTGCTAGAA GCGCTGGCTGCGGTGCAG TTTCATCC CTGCATCACGGCGATCGC CTGCTTTTCGGAGGC  49 512
JTM80_RS08635 2062477 .. 2062493 -  -3.5  -3.64703   GCTGCCCCAGGCAAA              CTGGCCC GAG GGGCACG              CCCCCAAAGTAGACG  52 260
JTM80_RS08615 2056819 .. 2056833 -  -8.6   -4.7329   AAAAGTACCCAAAAA               GCTTGA AAA TCAAGC               ATTTCAGCATATCAA  86 42
        gyrA 2053600 .. 2053611 -  -3.6  -3.24411   ATGCCTGCAAATATA                CACC CACA GGCG                 AGGCAATTGAGGTTT  47 403
JTM80_RS08590 2046267 .. 2046293 - -12.3  -4.05788   TTTTCCCAAAGCAAA         TCGCCCAGCAG AAACA CTACCGGGCGA         TCGCACTTTATTTGT  90 67
JTM80_RS08585 2044145 .. 2044167 -    -4  -3.27774   TACCTGAAGCAGCAA           CAGGACAGCC CTC AGCCGCTCTG           GAACCCTCTGGTGTC  47 49
JTM80_RS08575 2042650 .. 2042662 -  -7.7  -2.71712   TCTGCTGGTGCAAAC                GCCTA ATG TAGGC                CTAATACAAATCCGC  56 42
JTM80_RS08560 2038572 .. 2038585 -  -3.7  -3.06073   CAGATGGCGCAAAAG               CGGCG ATCG CCCCG                GCGATTGGACTGGTG  45 497
        thiD 2032623 .. 2032643 -  -6.1  -4.42976   GGACAAAGGAAGAAA            TACAGCAAG ATC CTAGCCGTA            TTGAGGTTTCTACGG  74 424
        rpmI 2025088 .. 2025103 -    -9  -2.75521   AGGAGATTTGCAAAG              TTGGGC GATC GCCCAA               TTTACCCTCCATCCT  62 65
        rplT 2024547 .. 2024570 -  -3.2   -3.0806   CCCAAATTCCTAAGA          TCAAACTCGCA ACT CGC-AGCTTGA          TCAAGCGCTTACCTA  44 38
JTM80_RS08495 NONE
JTM80_RS08490 2022917 .. 2022928 -  -7.2  -3.03159   TGAATGTCCGCAATA                GCCC CGGT GGGC                 AGGTCGTGGGAACGA  54 224
JTM80_RS08480 2017537 .. 2017552 -  -3.2  -3.14564   CGATCGCCGCATGAA              CGCC GCTGCTCA GGCG               AAGCTGGGCATTACG  43 462
JTM80_RS08470 2017034 .. 2017048 -  -2.7  -3.86346   CGATCGGCTCAGAAA               GCACC TGGCT GGGGC               ACGGCTGACTTCTAG  54 163
        glgA 2013154 .. 2013167 -  -3.1  -4.08216   GTATGGGCCTTAAAA               TCCTG ATCA CAGAA                CTAGACGTGAGCGAT  58 423
JTM80_RS08380 1996713 .. 1996749 -  -2.2  -4.79352   GGATGCAGAATAAAA   CCACCT-CCGCTGCG AAGTAGCG CTCAGCGGCAGGAAG    CCAGATGCCAGAAGC  68 240
JTM80_RS08370 NONE
       coaBC 1991317 .. 1991331 -    -2  -2.78596   CAGTGCGCGACGACA               CGCCCT GGA AGGGAA               GTATGACTATCGGTA  39 378
JTM80_RS08340 1986741 .. 1986752 -  -7.2  -4.17048   CTCGCTGGAAAATAA                GGGC GATC GCCC                 CTCAGGAAGCAAGTT  74 70
JTM80_RS08320 1981645 .. 1981677 - -15.6  -3.66874   GGAACCTCATTGAAA      GAGGGTCGGAGTTG TGACT CACCCCCGACCCTC      TAGTTCAAGCTTGTG 100 321
JTM80_RS08315 NONE
JTM80_RS08310 1978871 .. 1978887 -  -4.3  -2.54523   GTAGAGGTCAAGTCA              CCCAGCG ATA CGGTGGA              AGAGTTGGAACGTAA  41 288
        petN NONE
JTM80_RS08280 1972385 .. 1972413 -  -6.1   -4.5115   GACAAAAATGCAAAA       GAGCCAGACTGA TGCAGG TCAA-CTGGCTC        TTTTCGGAAGGTGAG  73 57
JTM80_RS08275 1970052 .. 1970078 -    -8  -2.62184   TTTCTCGCGAGACGA         TTTCTCGCGGAC GCA GCCCAGGAGAAA         TCGTCTAGAACCCAG  58 102
JTM80_RS08270 1969105 .. 1969117 -  -3.4  -3.63744   GCCTGGGTTAAAACA                GTCT GGATT AGAC                ATGCCTGAAGCTAGC  49 36
JTM80_RS08265 1968551 .. 1968568 -  -4.1  -2.95116   CGATGAGCTAAATTA             CTGGC TGGTCTTG GCCAG              CGCAACGGCCGGGGC  44 432
JTM80_RS08250 1965069 .. 1965082 -  -8.1  -3.01712   TCCTGCCCGCGAAGA               CTCGC CCCA GCGAG                TGGAGCTAGTCGTTA  60 230
        gcvP 1960888 .. 1960943 - -11.5  -2.80096   AAGAACAGGTAAGGA GGATTTTGGGTTTTGGATTTTAGCAG GGTAT CTCCTCAA-TCCAAAATCCAAAATCC CCAATCTAAAATTCC  71 72
JTM80_RS08230 1959531 .. 1959547 -  -3.5   -4.1899   CTACGCCATGCAAAA              GGGCGGC ATC GTCGCCT              CTGGCCCGACTAGCG  60 210
JTM80_RS08180 NONE
JTM80_RS08175 1948723 .. 1948734 -  -4.4  -3.22223   TAATTGGATGATTAA                CCTT CCTT AAGG                 TGACCCTAGACACGA  50 56
JTM80_RS08170 1946029 .. 1946051 - -20.6  -4.35524   CTCGCAAATGCAAAA           GGCACGGCGC ATC GCGCCGTGCC           TCTTATGCGCTTTTA 100 62
JTM80_RS08160 1941015 .. 1941036 - -13.7  -3.45321   AGGGATAAGGCAGAA           GCGGAGAGC GATC GCCCTCCGC            CCTGTGTCAACTTCA  84 38
       ndhD1 1939158 .. 1939181 - -10.3  -4.89729   CATAAAAGCCAAAAA          GCCCAGAGT TGAAAG ACTCCGGGC           TTTCCTGTTAACGGC 100 61
JTM80_RS08140 1936565 .. 1936581 -  -4.3  -4.10453   GAAAGCTTGTGAAAA              GCCCATC TCT GAAAGGC              CCATCTCTGAAAAGC  61 481
JTM80_RS08120 1934454 .. 1934468 -  -2.7  -3.33261   CCCGAATTCCTACAA               CGTCG CCGTC CGCCG               ACCCGCTAGATTTTT  46 74
JTM80_RS08090 1928759 .. 1928780 -  -2.3  -3.75153   TCCCGTGAACGTAAA           GGTTTAGACC CCA GG-CTAAATC           GAGTAATACAAGGGA  50 19
JTM80_RS08080 1925725 .. 1925738 -  -2.4   -3.5511   GTCCACCGACAAACA               CAAC AAAGAG GTTG                CCAGCCGCATCAAGT  47 522
JTM80_RS08070 1921117 .. 1921127 -  -4.6  -2.78679   TTCCGCCACCGAAAG                 CCGC CGG GCGA                 TTTCAGGGCTAGCGC  45 232
JTM80_RS08065 1920230 .. 1920244 -  -4.9  -3.39483   AGGTCAGCGAAAAAC               CCGGC AGGTG GCCGA               TCGGCTGCACAAGCT  51 430
JTM80_RS08045 1916651 .. 1916675 -   -10   -2.6381   ACAACCCTGAGACCA          TTGCAGCGTC GGGGT GACGCAGCAA          CGTGTCCCTATCATA  65 189
JTM80_RS08040 1915505 .. 1915516 -  -3.6  -3.01924   GATCCTGGTCGAACA                GCCC GACC AGGC                 AGCCAAAGTCGTGCG  45 226
JTM80_RS08025 1912519 .. 1912541 -  -9.1  -2.73408   ATGCAAATGAGATTA           CCGAGCCAG AGCAA CTGGATCGG           CTGAAGACCCAACTG  58 399
JTM80_RS08005 1908021 .. 1908031 -  -2.4  -2.62078   CGAACCATACAACAT                 GCGG GAA CGGC                 CTCAGGCAAACATCG  39 27
JTM80_RS08000 1907227 .. 1907241 -  -2.8  -3.14051   TGACTGCTATGAACA               GTGACT ATC AGTGAC               TATCGACCCTCAGAT  44 249
JTM80_RS07995 1905752 .. 1905775 -  -6.6  -2.62043   TTGAGAAGCAAGTTA          GGAGGGAGCG CAGA CGCTCCCTTT           TTTTGCGTCGGGTTT  52 77
JTM80_RS07985 1902752 .. 1902779 -  -3.2  -4.18018   TGCCGTGATGGAAAA        GACCGACCGCGC CTAC GTGCTGCCTGTC         GCCTTTAGCTGGGAT  60 335
JTM80_RS07975 NONE
JTM80_RS07970 1899189 .. 1899204 -  -6.2  -4.21462   ACGCATGATGGAAAA              TAGTTC ATTT GAACTA               TGCTAGCGCCCTAGC  68 58
JTM80_RS07965 1898698 .. 1898722 -  -4.2  -4.36592   CCTGAAGAAAAAATA          GGAGTTGGGT GTCCA AGCCCACTCC          AAAATCCAAGCTCTA  66 189
JTM80_RS07955 1897323 .. 1897337 -  -2.8  -3.57144   TCCTTGACTGCTAAA               GCCTAG CTT CTAAAC               TGGTATGCCCCCTAA  49 289
        recA NONE
JTM80_RS07920 1888611 .. 1888623 -  -9.1  -2.72991   CCAGAGTGCTAACGA                GCGCT GGC AGCGC                AACAAACAGGGTTAA  62 91
        hetR 1886403 .. 1886419 -  -3.6  -4.11216   GCCCTATTTGGAAAA              GCTGCT AATCG AGCTGC              GTCAGGCGGGATTGG  62 359
JTM80_RS07895 1883773 .. 1883803 -    -4  -4.07877   GGATGCCATAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  59 53
JTM80_RS07890 1882685 .. 1882717 -    -7  -3.64466   ATCCCAGATAGATAA     CTGCCCTCG-GCTGG CTTG CCAGTGCGAGAACAG      AACCCGGCTTATGTC  63 370
JTM80_RS07880 1881557 .. 1881574 -  -5.5  -3.69283   GAACGGAGCGAACAA             GACAACG ACTC CGCTGCC              TCCAGAGATTTCCTC  59 340
JTM80_RS07875 1879448 .. 1879488 - -17.2  -3.18118   TGACGGGAGAAGAGA  GGAAAAAGAAAGAACGAA GAAGT TTCGTTCTTCCTTCTTCC  TTCTTCCCTCTTCCC 100 41
JTM80_RS07860 1873022 .. 1873048 -   -21    -3.524   TACGCAGTTAGACAA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TTGTCCAAAACCCAA 100 314
JTM80_RS07855 1872130 .. 1872145 -  -6.8  -3.64703   GCGTTGGGATGGAAA              GACCCA AGGT TGGGCC               TTCTGCACGTTAGAT  62 299
JTM80_RS07850 NONE
JTM80_RS07845 1870150 .. 1870192 - -16.4   -3.0894   CAAGCACCCACTCAA GCAGCCCAACTTCGAGGCAC AGG GTGCGTAAAAATTGGGCTGC GGCTAGAACCCTACA 100 36
JTM80_RS07840 1869498 .. 1869522 - -16.5  -3.60098   AGCCCTCACCCTAAA          TCCCTCTCCCA AAG CGGGAGAGGGA          CTTCCAATCCGGCTC 100 198
        rimO NONE
JTM80_RS07800 1858145 .. 1858156 -  -2.2  -5.19916   AAAACACCCAAAAAA                GCCGC TAA GCG-C                GATTTTATCCGTTTT  74 243
JTM80_RS07795 1855651 .. 1855664 -  -3.1  -3.24879   GGCAAAATCCAAAAC               CCAAG ATCT CTTAG                TCCATACAAGTCCCC  46 40
JTM80_RS07790 1854116 .. 1854146 -    -4  -4.07877   GGATGCCATAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  59 53
JTM80_RS07770 1848454 .. 1848471 -  -3.3   -4.3739   GAGCGGCGGACAAAA             GCAGCGG GTGG CCATTGC              AGGGGCGATCGCCCG  64 318
        psbD 1846256 .. 1846279 -   -11  -5.42259   TCAGGTTCAAAAAAA          CGCCCCCACA AAAC TGTGAAGGCG           TGAAGAATAGTCATG 100 88
JTM80_RS07750 1845060 .. 1845078 -  -6.7  -4.09685   GTGCAGCTCCCAAAA             CTGCTGG AGTAA CCAGCAA             AGAGTTCCAAAGAAC  69 351
JTM80_RS07745 1843424 .. 1843443 -   -10  -5.10933   TTACGCAAAATAAAA            GGCTCCAC TAAG GTGGAACC             TTTCAGATAGTTATA 100 83
JTM80_RS07740 NONE
        cysK NONE
JTM80_RS07730 NONE
         der NONE
JTM80_RS07720 NONE
        acpS NONE
JTM80_RS07710 1837334 .. 1837349 -  -3.2  -3.86776   CAAGGAATCATCAAA              TCTGCA AATT TGCAGG               GGTTCCGCACAGGGT  54 53
JTM80_RS07705 1836488 .. 1836523 -  -4.6  -3.53444   CCAGTTTTTGCTAAA    GCGGGCGAT-CGCTCTG TGG CTGATCGTATCAGCCGC    CCTCCTAGCGCTCAC  54 111
JTM80_RS07700 1834734 .. 1834749 -  -3.2  -5.26316   CTATGGCAGAAAAAA              TCGTCA AGTC TGACGC               TGAGTGGAAAGCGCA  81 445
JTM80_RS07680 NONE
JTM80_RS07675 1829735 .. 1829758 -  -5.2   -3.6715   GGACGGAATCGTAAA          CGCGAACGCT AAAG AGGGTTGGCG           GACTGGCGGAGGGAT  59 10
JTM80_RS07670 1828525 .. 1828582 -   -18  -2.58358   AAATTACGATAAGAC TTACGCAGTTGGACGATTTCTCGCGGG TGCAG CCCGCGAGAAATCGTCCAAA-ACCCAA AAAGTTTAATTGCAA 100 55
JTM80_RS07665 1827282 .. 1827302 -  -8.3  -3.01712   CCGTGCCCGCGAAGA            CCTGCAACC GCT GATTGCAGA            ACAGGTTGCAGAGGC  56 385
JTM80_RS07650 1825087 .. 1825117 -  -5.3  -3.72576   GGGCGCTTTATTAAA      CGCGAGATGCTGCC GCTG GGCA-CGGCCCGCG       CCGACTGGAAAACGA  58 309
JTM80_RS07640 1821421 .. 1821445 -  -2.7  -3.28924   GATCGCCGCCTACAA          CTACACCTCGC GCC GCCAGTCGCAG          TGAGGCGCTAACCAA  46 33
JTM80_RS07605 NONE
JTM80_RS07600 1812397 .. 1812412 -  -7.6  -2.61264   CGCCCTATTCATAAG              GCTGTA TGAC TACAGC               TACGTCATTATTATT  55 94
JTM80_RS07595 1811339 .. 1811358 -    -5  -2.87132   GTTGCTGGGGAGATA            GACGGC-TG CTT CACGCCATC            ACCCGTCCCGCTGCG  49 24
JTM80_RS07590 1809759 .. 1809769 -  -4.6  -3.35798   ATCTTGCAGCCAGAA                 CCCC TCA GGAG                 CAGGCTTGCTTTAAT  52 421
JTM80_RS07585 NONE
JTM80_RS07580 1806631 .. 1806686 - -16.8  -5.23316   GACCAGATTAAAAAA CAGATCCTGA-ACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGTCTTTGGGTTTT ATGTTTATTAATGTC 100 96
JTM80_RS07550 NONE
JTM80_RS07545 1796862 .. 1796873 -  -5.8  -5.60993   CTTTCTACAAAAAAA                TCCC TACA GGGA                 GGGTGGAGCCGCTAC 100 17
JTM80_RS07535 1795042 .. 1795056 -  -4.2   -3.3452   GACAGCAGGGGAGAA               GGAGCA GGT TGCTGC               TGATTTGTAATCCCT  52 56
JTM80_RS07525 1793213 .. 1793245 -  -8.3   -5.4505   CTGCCCAACAAAAAA      CGCCAGCTCATGCCA ATG CGGTCTGAGATGGCG      TAATAGAGTTCAAGC 100 120
JTM80_RS07520 1792340 .. 1792368 -  -4.4  -3.07522   ACATTCCGCAATATA        TCAGCGTAGCAG ACCAG CCGCGCCGCCGA        CCGACCTAGCCGCTA  48 38
        ychF 1791001 .. 1791027 - -17.4  -3.29511   CTGAGCTTTGGACAA         TTTCTCGCGGAC TGC GCCCGCGAGAAA         TTGTCCAAATGCGTC 100 122
JTM80_RS07510 1790508 .. 1790529 - -10.9  -3.20991   TCCAATTCAACCCAA           GCACTCCAA TGCT TTGGAGCGC            AAATTAATGGATGAA  73 202
JTM80_RS07505 1789638 .. 1789667 - -16.5  -4.19177   ACGTTTGAAGACAAA       GATGCGCTCCGAA CTGC TTCGGGGCGCATC        TTTTTGAGGGTATAA 100 47
JTM80_RS07475 1775477 .. 1775488 -  -7.2  -2.71202   AAAAAGGCAAATTCA                GGGC GATC GCCC                 TACCCCAAAAGTTTC  55 285
JTM80_RS07470 NONE
JTM80_RS07465 1773444 .. 1773462 -  -4.4  -2.96695   CTCCCCAGCAAATCA             CCGAAGTC CCC GGCATCGG             CCCCAAAATGGCGCA  46 121
JTM80_RS07445 1766592 .. 1766602 -  -2.4  -3.14344   TATTCGCCGCATGAA                 GCGG GCC CTGC                 GCGAGTTCGCCATCA  41 231
JTM80_RS07410 1758668 .. 1758708 -  -4.6  -3.27525   GCGTCCTAAAGCCAA  GCGACCCCATAGGCAG TCTCAAACG CTGCCTCAAGAGCCGC  TCCAAGAAACTGCTG  50 63
JTM80_RS07405 1758289 .. 1758329 -  -7.5   -3.0263   ACCATCCTGCTAACA GTGTAGCGGGGAGGCTCA ACTCTG CGAACCTCCCCGCG-CTC  ATTTCGGCTGGGTTA  57 38
        grxD NONE
JTM80_RS07395 1756929 .. 1756976 - -26.4  -4.90471   ACCCAAAATATAAAA CCCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGA TCTGTTTTTTAATCT 100 72
JTM80_RS07390 NONE
JTM80_RS07385 1754251 .. 1754265 -  -7.1  -2.87564   TCAGGTGTTGACAGA               GGCAG GGCTG CTGCC               GGGGGCGCTGGTGCG  53 448
JTM80_RS07370 1752490 .. 1752506 -  -5.1  -2.63549   CACCGCCAAGAAGAC              CGCAG CCTGCCC CTGCG              TGGCAAGATTAGCGG  43 513
JTM80_RS07355 1749970 .. 1749984 -  -4.9  -2.93891   AGCGGCAAAAGAGCA               GCGGC GTGAA ACCGC               TTTCTCTATCCTAAA  47 126
JTM80_RS07350 NONE
JTM80_RS07345 1746686 .. 1746700 -  -8.6  -2.87294   AACAGTTATACTACA               CCTTTG AAA CAAAGG               AATTCCTGATTCGAG  59 398
JTM80_RS07310 1738870 .. 1738917 - -20.6  -4.89838   TTAATAAATATAAAA CCCAAAGACCCTGCGCTGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGA TCTGTTTTTTAATCT 100 229
JTM80_RS07305 1738378 .. 1738392 -  -6.4  -3.87373   GACAGGCCGGACAAA               CCGTGA CTA TCACGA               TGGAGAGCATTGAGT  64 239
JTM80_RS07275 1732526 .. 1732536 -  -4.6  -2.53271   CTACCGGGAGAACAT                 GCAG AAA CCGC                 TGGCGGCTCCTTTGC  43 479
JTM80_RS07250 1725970 .. 1725984 -  -3.5  -3.71378   GATTCTAGACGCAAA               CACCA AGACA TGGCG               TATCGCTCGCGCTAA  54 92
JTM80_RS07245 1724514 .. 1724532 -  -2.4  -3.60316   ATCTTCTCAAAAAAT            CTGCCGC TTGAGC GCGG-AG             GGCGATCGCCCCGGT  47 57
JTM80_RS07240 1724077 .. 1724090 -  -5.9  -3.47403   GTAAGGCAGAACGAA               CCGGG CAAC CCCAG                GCAGCGGGCGATCGC  57 301
JTM80_RS07230 1720117 .. 1720158 -    -3  -3.75292   ACCCACGACGAAGAA CACAG-CGACCACAAGC-CCA ACC CGGTGCT-GTGGACGGCAGTG CTGCTGGGCGCAACG  52 484
JTM80_RS07220 1717989 .. 1717999 -  -5.4  -3.35679   TCGCCTGATGGACAA                 GGTA GAA TACC                 GCCTCCAGGTAAGCG  53 310
JTM80_RS07190 1712260 .. 1712270 -  -5.4  -4.35926   ACCGCAAATCCAAAA                 TCGA GCA TCGA                 TATGATTCTCTCTAA  69 37
JTM80_RS07185 NONE
JTM80_RS07180 1709833 .. 1709857 -  -7.9  -2.62983   CTGAGGTCTATATCA          CCAACAAAGAC ATT GGCTTTGTTAG          CGAGGGGCTGCCTGT  53 323
JTM80_RS07155 1699565 .. 1699600 -   -15  -4.20817   CATACCCCAAAAGAA    TGCTGCACAAACCC-AT CAC ATAGGGTTTATGCAGCA    GTTTTAGTGAATTCG 100 118
JTM80_RS07150 1698776 .. 1698786 -  -2.4  -3.23692   GAGGAGCACGACGAA                 GCGG CTC CGGC                 AAGCGAGTTCGTTCG  44 210
        fabI 1682110 .. 1682136 -   -21  -3.28712   TTGGGTTTTGGACAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTGTCCAACTGCGTA 100 191
JTM80_RS07055 1671139 .. 1671152 -  -2.3  -2.53876   TGCGATCGTAAGTCA               GGCTA GAAT TTGCC                ATGCGACTGCGATCG  38 96
JTM80_RS07050 1668578 .. 1668599 -  -5.1  -3.62597   GTCAGGGTTGAATAA           TCCTGGTCT GGGA AATCCAGGA            ACGCCGCTCGATCCC  53 227
JTM80_RS07035 1664919 .. 1664935 -  -6.5  -2.72344   GGCGACCTTTAACTA              CGATGCC TAT GGCATTG              CTTTGATTGCGCTGC  49 307
JTM80_RS07025 NONE
        rpsN NONE
JTM80_RS07015 1662505 .. 1662545 -  -6.1  -4.78029   GCAAGAAAAGGAAAA GCTGCGATCGCACTTCCT GAACCA AGGGAGGGCGATCGCC-C  TGGCACTCCAGCAGC  82 320
JTM80_RS07005 1661446 .. 1661459 -  -3.7  -3.06831   CGAAGCCGCAGCGAA               CCTCG CGCC CGTGG                TTTACCCCACGCGCC  45 277
JTM80_RS06985 NONE
JTM80_RS06980 NONE
JTM80_RS06975 NONE
        surE 1654927 .. 1654940 -  -3.7  -3.18681   GCTCAATCCCACCAA               CGCCG GTTT CGCCG                AAGGTCAAGCACGGG  48 295
JTM80_RS06965 NONE
JTM80_RS06955 1650999 .. 1651010 -  -2.2  -4.11692   GACGGAGGCGCAAAA                TCGC TTCA GCAA                 CTTGCTCTAGCCCTC  55 87
        ilvN NONE
JTM80_RS06940 1646235 .. 1646273 -  -7.4  -4.25566   AAGAAGTAGGCAAAA   GGGGCATTTTTCGGGTGT GAC ACGCCTGAAAAATGCCTG   GAAAATGCCTGGAAG  74 56
JTM80_RS06920 1640339 .. 1640352 -  -3.7  -3.61715   GATGCGCCCCAAGAA               CAGCG CGAT CGCGG                CATTTTGTACTATCA  51 152
JTM80_RS06890 1632322 .. 1632332 -  -3.2  -3.08073   AGCATTTGTAATAGA                 TCCC TTG GGAA                 TTAGCGAACTAGATG  44 26
JTM80_RS06885 1631118 .. 1631128 -  -5.4  -3.53224   TATCTCCCTCCTAAA                 TCTG CAT CAGA                 TCAGGATAGCTAGCC  56 10
JTM80_RS06880 1630004 .. 1630030 - -19.6  -5.40474   AGCCCGGCAAAAAAA         TTGCTGCATGGC ATT GCCATGCAGCAA         GCTATACCTATGAAA 100 277
JTM80_RS06875 1628114 .. 1628128 -  -5.7   -4.4767   TGACGCAGGACAAAA               TGACC TTCCT GGTCA               GCCACCGCTTTTCCA  72 224
JTM80_RS06865 1624224 .. 1624254 -  -9.1  -5.29846   AAGGCTAAACAAAAA      GCTGGGAGTTGATT GGTG AATCG-CTCCCAGC       TTTAGTTACAGGACT 100 270
        gloA 1619469 .. 1619495 -  -3.7  -2.71791   AGGTCGCGTTGAAAT        TCGCCCGTTGAC CTCG ATCAA-GGGCGG         CATGGCTGAGTTTTA  43 494
JTM80_RS06825 NONE
JTM80_RS06820 1615751 .. 1615764 -  -5.2  -3.06915   ATTTATCGGATTGAA               GGCG TGCGAT CGCC                CAGTGCTGACACCTT  49 514
JTM80_RS06805 1612532 .. 1612545 -  -2.3  -5.19879   TTTGAAATACAAAAA               GGGCA CAGT TGCCG                AACGTCGTGCCGAAC  80 459
JTM80_RS06780 1603477 .. 1603495 -  -3.9   -2.7035   TTGATTCACACAGGA            CTTA-CGC ACTT GCGATAAG             CTCTTTGGGTTTTGG  43 84
       rfaE2 1602733 .. 1602747 -  -4.2  -3.16914   AGCACCGAGCAAAAG               CGCG AGTTTTA CGCG               ATTTCTCATTTTAAC  48 153
JTM80_RS06770 1601538 .. 1601553 -  -7.5  -3.02144   CGATGCTTTTGAACA              GGCCG TGATCG CGGCC               GCCTCGCTCTATGCC  54 415
JTM80_RS06755 1599610 .. 1599630 -  -3.2  -4.94058   CTAATCGAAACAAAA            CCCAGTGA GGCTT TAACCGGG            CAAAAACTATGAAAA  73 192
JTM80_RS06750 1598276 .. 1598308 -  -4.9  -5.51402   AGAGAGCCAAAAAAA     GATGGCGA-TCGAG CAAAAC CTCACCTCGCCATC      TCTGAAAAAATTGAG  87 96
JTM80_RS06745 1597683 .. 1597705 -  -6.2  -3.52472   ACAGCCGCAAACCAA           GCAGCCGC AAACCAA GCAGCCGC           AAACTAGGACAACAC  59 44
JTM80_RS06740 NONE
JTM80_RS06735 1596187 .. 1596197 -  -8.2  -3.21593   CACGGTGCTAGAACA                 CGCG CTG CGCG                 AAGATTCATCTTTGC  59 304
JTM80_RS06715 1592464 .. 1592479 -  -4.6  -3.04398   GCGCTGCTGCAAAAG              GCGCTG GCCG CAGCGT               GACGGTCGCCTTATG  48 36
        cysH 1591274 .. 1591295 - -10.1  -5.08367   AACAGAAACGAAAAA           GAGGCGCAC AACT GCACGCCTC            TACACCGTAGCGAAC 100 85
JTM80_RS06700 1590015 .. 1590027 -  -7.7  -2.50493   GTGATTATCAAAACC                GTAGC AGT GCTAC                CCGGTCGCCGTTATG  53 238
JTM80_RS06690 NONE
JTM80_RS06685 1588095 .. 1588131 -  -8.6  -3.84619   AAAGCCTAAACAGAA   GGC-GAGAACTGGGGGC GATC GCCCCGCGCTCCCTGCC    CTATTCTCCAAACCG  72 26
JTM80_RS06680 1586833 .. 1586868 -  -9.2   -4.4891   TCGATTACCATAAAA    CAGGCTCTACAG-CT TTTATTC AGACTGTAGAGCCTA    ATTCGATTGCAAGAG  86 164
JTM80_RS06675 1585764 .. 1585822 - -14.9  -2.62616   TGATTCTCGACAGGA TTTACGCAGTTGGACGATTTATCGCGGGC GCA GCCCGCGATAAATCGTCCAAA-ACCCAA- AGAGCTTATCGCAAG  83 316
JTM80_RS06670 NONE
JTM80_RS06640 1578392 .. 1578404 -  -5.5  -3.21395   ATGTTTCTTAGAACA                CCCTC TAG GAGGA                TTTTGGGAAAACGTG  53 198
JTM80_RS06635 1577479 .. 1577504 -  -5.3  -3.65351   CTACGCCCATCGAAA         CGGCGATCGCCC AAC GGGTGA-CGCTG         GCCCTGCGCTGCGGC  58 519
        psaK 1568126 .. 1568143 -  -2.5  -3.92577   CAAGTCCTAAAAATA             CGGGCCG AGGA CGGGCAG              AACCCTGGCGGCGAA  53 107
JTM80_RS06580 1566419 .. 1566446 -  -4.2  -3.38951   GTATCAACAGACTAA        TATAGCAA-CACC TGC GGCGATCGCCATA        CTCATTACGCCACAG  52 129
JTM80_RS06575 NONE
        purU NONE
        wecB 1563394 .. 1563407 -  -3.9  -2.70932   TCTGTCGTTGAATGA               TTTTC GATT GAAAA                TTTCCTGCCGAGGGA  43 121
JTM80_RS06560 1561881 .. 1561907 -    -5  -2.99871   CGCCAGAGGAAATGA         CGGAACTGCTGC AAG GCATCGGCTCCA         CGACTTACGAAATGG  46 340
JTM80_RS06540 1557792 .. 1557824 -  -7.2  -2.71791   AGGGTGTTGCTAAAG      TCTGATTCAGAA ACTTGGATA TTCCGAATCAGA      TCAATACTCTAGCCA  56 276
        rpoD 1556125 .. 1556143 - -13.2  -2.60688   GAACCACTCCAGAAG             TCCCCCTT AAT AAGGGGGA             TTTAGGGGGATCGCC  78 163
JTM80_RS06510 NONE
JTM80_RS06505 1549596 .. 1549619 -    -3  -2.52464   CCCTGTCTCAAGGTA          TATGCCTCGG TGGA CTGAGGCACG           ATTGTCGTCATCCAA  40 55
JTM80_RS06500 1548826 .. 1548837 -  -2.2  -5.04868   CTAAATTAAAGAAAA                GCAA CATT TCGC                 AATCTTTAACTCAGT  70 65
        uvrA 1543967 .. 1543992 -  -7.6  -4.18018   CTCCTTTACCCAAAA         GCTGATGAAG CACATC CATCATCAGC          ACATTGATCTGCATA  74 145
JTM80_RS06480 NONE
JTM80_RS06465 NONE
JTM80_RS06460 1540338 .. 1540377 -  -4.4  -4.99435   GGGAAGAACGAAAAA  CGAAAAACGAAAAACGAA CCTC TTCCCTCTTCGTTCTTCC   CTCTTCGTTCTTCCC  76 523
JTM80_RS06445 1539168 .. 1539181 -  -2.3  -4.15044   CGTCTCCCTAAGAAA               CGACC TCTA GCTCG                TCTTCAAAAAACCAG  57 4
JTM80_RS06440 1537960 .. 1537978 - -13.2  -3.54424   GTCGATCCCCCTAAA             TCCCCCTT ATT AAGGGGGA             CCTCCGGAGTGGTTC  86 101
JTM80_RS06415 1531883 .. 1531904 -  -4.4  -4.57073   GACCTGGCGCAAAAA           GTGCTGGAC GGGCT GCCCAGC-C           TAGAGGATCTGGAGC  72 469
JTM80_RS06370 1523109 .. 1523125 -  -2.2  -2.71712   CTTCCCTTTTCAAAC              TTGCCC TACAT GGCCAA              CTGCTTAACGTGGTC  39 14
        arsS 1521492 .. 1521509 -    -7  -3.53224   GACGCTGCCGCCAAA             TGCAGG CGAACC CCTGCA              ACGAGTCACGATTGA  60 424
JTM80_RS06350 1518981 .. 1518997 - -15.1  -4.32857   GTTCTCAAACAGAAA              GCCCCGC ATT GCGGGGC              TTTACCAATGGGATC 100 85
JTM80_RS06340 1516306 .. 1516316 -  -6.8  -3.64049   GCAAGAATTGGCAAA                 GGTG CAT CACC                 AATACCTGATGGAGC  63 178
JTM80_RS06330 1514912 .. 1514925 -  -3.1  -4.30416   ACGATTAACGTAAAA               CG-AGC TAG GCTGCG               TGCTTGAACCGTAAG  61 349
JTM80_RS06325 1514326 .. 1514344 -   -16  -5.06414   CCTGGCCAAGAAAAA             CCCCCTGG ACT CCAGGGGG             TCGTTCACTCTTCGA 100 359
        nrdJ 1499502 .. 1499516 -  -5.6  -4.56775   ATTGGGTTTCAAAAA               CACTGG CAG CCAGAG               GCAAGAGCATTGCTG  75 268
JTM80_RS06265 NONE
JTM80_RS06260 1496857 .. 1496871 -  -2.8  -3.68827   GAGTCACCATTCAAA               TCTACA TGG TGTTGA               TTGCCTATCTGATTC  52 207
JTM80_RS06245 NONE
JTM80_RS06240 1494129 .. 1494151 -  -6.3  -2.88861   CACGAGTTTGATATA          GCCCTA-CGC AGTC ACGTTAGGGC           ATTCTCTAAAAGCAG  52 6
JTM80_RS06235 1493630 .. 1493642 -  -4.8  -2.59881   TACTCATTGCATAAC                TGGG ATGCA CCCA                ATCCGAACACCGACC  44 1
JTM80_RS06230 1492483 .. 1492493 -  -5.4  -3.22475   CCCAGTCTTACAAGA                 CTCA GGA TGAG                 AATTGACCATTGAGA  53 16
JTM80_RS06225 1491624 .. 1491636 -  -3.3   -2.6186   ATCTAAGCTTAGAAC                GTTGG CTC CCCAC                TTCTTCCTCCAATCC  40 180
JTM80_RS06220 1490380 .. 1490407 -  -2.7  -4.03995   GTCCGCATAAAAAGA        TGTGTCAGGCA GCTGGT TGACTGACAAA         ACTAATCGGCGACAT  56 27
JTM80_RS06215 1488923 .. 1488950 -  -2.6  -4.15044   GGTGCCGTCAATAAA        GGGCGAAC-ACTG CTT CAGCCGATTGCCC        TATTTACCGTTGACC  57 66
JTM80_RS06195 1484624 .. 1484635 -  -7.2   -2.7924   GAGCATAATACAGGA                GGGC GAGC GCCC                 GTTAATCACCTAATC  56 48
JTM80_RS06185 1482587 .. 1482613 -   -21  -3.31461   TACTCAGTTGGACAA         TTTCTCGCGGGC GCG GCCCGCGAGAAA         TTGTCCAAAATCCAG 100 265
JTM80_RS06180 1480997 .. 1481007 -  -3.2  -4.56597   GCGCGTTCTGAAAAA                 CGAG CGG CTCA                 GTTGGGAAACGCTGC  69 492
JTM80_RS06160 NONE
JTM80_RS06155 1476361 .. 1476379 -  -3.8  -4.09739   TCAACGGTCTGAAAA             CCGAGG GCGATCG CCTCAG             TTTGGTCTGCGAGCA  60 149
JTM80_RS06145 1474078 .. 1474097 -  -8.6  -3.09635   ATCCCCAGCACTGAA            TCCAGCCCT GTC AGGGC-GGA            CGTTCCACACCATAG  62 128
JTM80_RS06140 1471206 .. 1471216 -    -4  -3.55173   ATTACAACACCACAA                 GAAA CCT TTTC                 TCCAGTCTAATTCGC  52 153
JTM80_RS06135 1470786 .. 1470810 - -10.7  -4.59089   GAATGCACAAATAAA          CGGGCCGCT GGATTAG AACGGCCCG          TTTGTGCCCGGTCGA  91 114
JTM80_RS06105 1465828 .. 1465856 - -10.3  -3.96705   GCTACAAAAGCTAAA        CCCCGATTGAC ACGAGCA GGCAATCGGGG        TTACGGGGAGATCGG  84 172
JTM80_RS06100 NONE
        ubiE 1463246 .. 1463256 -  -2.4  -2.62616   CGATCGCCCAGATCA                 CCAG TCG CGGG                 CTTTGGTGGCAACCA  39 12
JTM80_RS06090 1462346 .. 1462363 -  -3.3   -3.9373   GACGGAAAACCGAAA             CTCTACC TGTG GGCTGAG              TTCTTTGGGCTGAGT  54 165
        ssrS 1461988 .. 1462006 - -13.2  -3.54424   GTCGATCCCCCTAAA             TCCCCCTT GAA AAGGGGGA             CTTCCGGAGCGGCTT  86 110
JTM80_RS06080 1461367 .. 1461377 -  -2.4  -3.21276   TTTGTCTTGACAAGA                 CGGG CAC CTCG                 AAAAATTCAGATCCT  44 242
JTM80_RS06075 1459933 .. 1459945 -  -3.3  -2.71712   CTGTTTTCGCGAAAG                TGGGA TGC TCCCG                ATCTCACCTCTAGAA  41 61
JTM80_RS06060 1456703 .. 1456715 -  -3.3  -3.00022   GGGATCTTAGACAGA                CGGCT GTC AGCCT                AATTCCCCTCCTAGA  42 524
JTM80_RS06045 1453886 .. 1453924 - -13.2  -2.87132   TTTTTGGGGTAGAGA   GTTTGAGATGATGAGCGC GTT GCGCTCGTCATCTCAAGT   TTTAAGCGCCCACCC  80 27
JTM80_RS06035 NONE
JTM80_RS06030 1450698 .. 1450739 -  -8.8   -3.3785   GGAACGGAGGGATAA CTGGCTGAGCCG-CCCGA-CG CGG CGACCGGGACAACTCAGCC-G CTGATAAATCCATGC  69 56
JTM80_RS06025 NONE
JTM80_RS06020 1448593 .. 1448613 -    -4  -3.91984   ACAGTTGCTAAAGAA            TCTGGC TAAGCAGCC GCCAGA            ATGTCCTTCAGCGGT  57 10
JTM80_RS06015 1446643 .. 1446653 -  -4.6  -3.33744   CGTTGGGGGAAAAAG                 CGCA GGT CGCG                 AATTGGACACTGCTT  50 238
JTM80_RS06010 NONE
JTM80_RS06005 1443568 .. 1443580 -  -6.9  -3.68569   TCAGGGACGCAACAA                GGCGA TCG CCGCC                CGCAACGAAATGCGC  63 359
JTM80_RS05995 NONE
        gatC NONE
        rnhA 1440510 .. 1440523 -  -3.8  -3.33162   CAGGCGACTGTAGAA               GTCG AAGGCG CGAC                GATCGCCGAATTGCT  49 288
        purL NONE
JTM80_RS05955 1431298 .. 1431311 -  -2.5  -5.07011   CATACAAATTAAAAA               TTAAT AAAA ATTAA                AACGCAGCGTAAACC  74 274
JTM80_RS05950 1430691 .. 1430711 -  -5.3  -3.53761   CAACCCTCGCCCAAA            CCCCGCTCT CCC AGATCCGGG            TAGAGGGGCGCAAGG  55 108
JTM80_RS05930 1427010 .. 1427024 -  -5.7  -2.71712   CGGTTTCTCGGAAAT               CCTTG ATTAA CAAGG               CTTTCATGCTCCTTT  51 183
JTM80_RS05925 1425626 .. 1425639 -  -3.7  -4.42619   CAAGATCTCAGAAAA               CGCTC TAGC GGGCG                ATCGCCCCAGACTCT  64 48
JTM80_RS05920 1424121 .. 1424132 -  -5.8  -2.86603   ATTATATCAAAATAC                GCCT CACT AGGC                 TAGAAATTGCTATAA  51 222
JTM80_RS05915 NONE
JTM80_RS05905 1420958 .. 1420968 -  -5.4  -3.22475   CCCAGTCTTACAAGA                 CTCA GGA TGAG                 AATTGACCATTGAGA  53 16
JTM80_RS05900 NONE
JTM80_RS05895 1419451 .. 1419473 -  -2.7  -4.21194   GGTGATTACCGAAAA          CCACCACGGA CAAA TCCA-GGTAG           ATAGCGAACTAGGCA  59 476
JTM80_RS05885 1417557 .. 1417583 -  -9.5  -5.35459   ACAGAGCATAAAAAA        GCGAGGCGCTGA CTGC TCAG-ACCTCGC         TCGTTACAATGTTTT 100 64
JTM80_RS05880 NONE
JTM80_RS05875 NONE
        bcsA 1409077 .. 1409088 -  -7.2  -3.70773   CCGCAGAGGTAATAA                GGGC GATC GCCC                 AATCTCTCTACTGGA  67 405
JTM80_RS05865 NONE
JTM80_RS05860 NONE
JTM80_RS05855 NONE
JTM80_RS05850 1403094 .. 1403104 -  -5.4   -3.1634   CGCCAAATCACTTAA                 GCTT TGA AAGC                 CCATTAGACCCGCTC  51 265
JTM80_RS05840 NONE
JTM80_RS05835 1399261 .. 1399272 -    -3  -2.90403   TTAATCCACAAGAAT                CAAT AATT ATTG                 CAGGATTGTTGCAGA  42 72
JTM80_RS05825 1397090 .. 1397102 -  -2.7  -3.06312   AAATTTTTGACTTAA                TCCAA CTT TTGAA                CAGTTTTGAACAGTT  44 125
JTM80_RS05820 NONE
JTM80_RS05815 1395791 .. 1395809 -  -3.8  -4.13014   GCTATACCCGCAAAA             CACGCTCC AAA AAAGCGTA             ACTATTATTGTGTGT  61 132
JTM80_RS05810 1395420 .. 1395435 -  -8.2  -3.60104   TGGACAGGAGAAACA              CGAGCG CGAT CGCCCG               CTTCCCAGCCCATCC  67 302
JTM80_RS05805 1394238 .. 1394254 -  -2.2  -4.38712   CTGACTGTTAGAAAA              CACGGT AAAGA ACTGTG              AAAAACGCTGCCATT  60 387
JTM80_RS05800 1392914 .. 1392947 -  -3.2  -5.00339   ACGAAGAACGAAAAA     CGAAGAATGAAAAA CAGAAC CTCTTCTCTCTTCG      TTCTTCTCTCTTCGT  73 50
JTM80_RS05790 NONE
JTM80_RS05785 1389851 .. 1389880 -  -7.7  -4.22652   GGAGATCAGGCAAAA       CCCTTTCGGCGGG TTCA CCCGCACCAAGGG        GGAATTCTTTGAGTT  74 133
JTM80_RS05780 1388905 .. 1388921 -  -5.1  -4.38116   CCTAGAAAAATGAAA              CCCCT CAGCGCT AGGGG              CTGAAACCCTTCAAC  69 86
JTM80_RS05775 1387906 .. 1387919 -  -2.3  -3.14026   TAGACCGAGAGCTAA               CAGTG ACGG CGCTG                GCCATGGGATCGATC  41 187
JTM80_RS05765 1385666 .. 1385680 -  -5.7  -4.16279   CAGACGATGCCAAAA               CGATG GGCAA CATCG               AGTACATGCGCTCGA  66 340
JTM80_RS05755 1384478 .. 1384502 - -15.7  -4.65263   ATCCCCGAAAACAAA          CGGCGCATCTC GAT GAGGTGCGCCG          CGCCAGAAGCGTTAT 100 252
JTM80_RS05750 1382515 .. 1382560 -  -3.2  -4.23892   TGCAACGATGCAAAA TCGGCCGTCGAATGGGGTTCC TGCTG GGGACGAC-TTCGACGGCTAA TTTTATAGGCTAATT  59 138
JTM80_RS05735 NONE
JTM80_RS05730 1379532 .. 1379553 -  -9.4  -5.35815   CAGACCAAACAAAAA           GCGGACAG GAAACT CTGCCCGC            TTTCATCAATCAAAG 100 57
JTM80_RS05725 1377994 .. 1378013 -  -2.8  -4.20932   AAGATGCAGTCAAAA            GCGCTCCA GATC TAAAACGC             CCAGGTAGGACAAGC  59 169
JTM80_RS05720 1376406 .. 1376432 - -11.7  -5.89659   ACAAAAAAACAAAAA        GACCTTGC-GAG AATT CTCAGCAAGGTC         TTGATGCTTTCTAGC 100 109
JTM80_RS05690 1368707 .. 1368717 -  -2.4  -4.08216   CGACTCTGCCCAAAA                 CCTG TTC CTGG                 ATCAGTCTGGACTTA  56 178
JTM80_RS05680 NONE
JTM80_RS05675 1366979 .. 1366989 -  -2.4  -3.24137   AACCACCGCAGAAGA                 GAGC ATG GCAC                 AGGATTCAAAAAACT  44 36
JTM80_RS05670 NONE
JTM80_RS05665 1363724 .. 1363735 -  -4.4  -4.13767   CCCCGTAGCCCAAAA                TCCT CACT AGGA                 TGGAGGAAATAGCAG  63 387
        fabG 1362626 .. 1362670 -  -4.3  -3.43676   TCTATTAACCTAGAA GCCTCTGA-GG-TCAAGCGTC GTCCT GTCGCTCACTCCCTCAGAGGC TTTTGAATTGAGGCT  52 113
JTM80_RS05640 1359835 .. 1359882 -  -6.2  -3.07962   CCGGAGATGGCAACA GGGGCGATCGCCCTCCTCCA CCCGAAAT TTACAGAAGGCGATCGCCCT GCAGGCCGTTACTTT  53 110
JTM80_RS05635 1358963 .. 1359009 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 288
JTM80_RS05620 NONE
JTM80_RS05615 1354610 .. 1354624 -  -4.2   -4.1021   GGGTAGAACCAGAAA               GCCG CGTCCTC CGGC               AATCCTGCTACGATC  61 65
JTM80_RS05610 NONE
JTM80_RS05605 NONE
JTM80_RS05600 1350621 .. 1350632 -  -7.2   -2.7674   GAGACGAGCGAAGCA                GCCC CAAG GGGC                 GCTAAAGCAGGAGCT  56 114
JTM80_RS05595 1349613 .. 1349626 -  -3.7  -4.56775   AGCCCCCCTTAAAAA               GGGGG GAAA CCGCC                TTAAAGTCCTCCTTT  66 213
JTM80_RS05580 1347586 .. 1347611 -  -7.6  -4.54727   GGCGCGAAAGCAAAA         GGCAGGGA ACCCGAATCG TCCCTGCC          TCAGAGTCTACCAAC  79 101
JTM80_RS05575 NONE
        mgsA 1343610 .. 1343660 -  -7.5  -2.88544   GTCTATCGCCACATA GCGCCACGTAGCGCCATGTATCG CCTAT CGCCATATATCGCTATGTAGCGC CATGTAGCGCCGCTC  57 95
JTM80_RS05565 1342757 .. 1342780 - -14.6  -3.88029   AGCTGAGACAAAATA          GCTCAGAGGC GATC GCCCCTGAGC           AGTGAAATCTCCTAA  93 78
JTM80_RS05560 1341932 .. 1341944 -  -3.3   -3.8647   ATCCATCAGATCAAA                CAGGG CAT CTCTG                GCGTTTCCCAAGCTG  54 460
JTM80_RS05550 1340011 .. 1340031 -  -4.7   -2.8547   ATGGGTTACAGTAGA            CCTCCTG CATGAAT CAGGAAG            CGTGTGCCAGTTCGT  45 18
JTM80_RS05545 1338656 .. 1338678 -  -2.6  -3.24924   TTCTCAGCCAGAATA           CGCCCACC TTAGCGT GGTGAGAG           TGCGATCGCCCCAAG  44 133
JTM80_RS05525 1335092 .. 1335102 -  -3.2  -4.19577   GAATGTGGAAAACAA                 CGGA GTT TCCA                 CGTTTGCATCTGTTC  59 214
JTM80_RS05515 1331944 .. 1331962 -  -8.8  -3.53012   GCCTGTTGCGGCAAA             TCGGCTGC TAC GCAGCCCA             GGGAAATCGCTTCAG  66 516
JTM80_RS05485 1324779 .. 1324791 -  -9.1  -3.30124   CTGCATCGGGTAGAA                CCCGT GAC ACGGG                GCACGCGGCTGGTTG  63 257
JTM80_RS05475 1322777 .. 1322788 -  -2.2  -2.88033   TACAAGCCATCAAAC                GAGC CATC ACTC                 AAATCACTCCTGCAC  41 29
JTM80_RS05470 1321274 .. 1321292 -  -3.1  -4.56597   GCGTTCTCGTAAAAA             GATTCTC GTAAA GAGATTC             CCGCACAAACATTCC  64 62
JTM80_RS05465 1320027 .. 1320039 -  -3.3  -4.45544   CTCTAGGAACTAAAA                GCACG TCG CCTGC                CAAAACTACAGGCAT  64 479
JTM80_RS05460 1319164 .. 1319195 - -13.1  -4.46617   AAAACAAATGCAAAA      TGCAGAGTAGCCG TCTGTG CAGCCACTCTGCA       AGCATTCTCGCAACC 100 340
JTM80_RS05455 1318267 .. 1318277 -  -5.4  -2.85699   AGTCAGCGACGAAAG                 GTTC ACA GAAC                 GCGGCTGGGGGAGGG  48 225
JTM80_RS05450 1316828 .. 1316838 -  -6.8  -3.81951   CCCCAGAGGAGGAAA                 CAGC GCT GCTG                 CTGCGGGTGCTGCAT  66 161
JTM80_RS05440 1314144 .. 1314161 -  -6.9  -3.84719   ACGTCGAAACCCAAA             CGCCTGT GATG ACTGGCG              CTCGTGATGACTGGA  67 67
JTM80_RS05435 1313197 .. 1313244 -  -3.5  -3.73107   TTACCAAAGCGGAAA GTTCTATACCTGTATCCGCAG GACGAT CTGTAGCTATAGATACAGAAC TTTTCTTCGATCATA  54 275
JTM80_RS05430 1312817 .. 1312861 -   -10  -4.34402   CCTTGCAGACCAAAA TCGGGTTCCGAG-AGCGTCGC ATCT ACGACCCAGCCCAGAACCCGA TTGAGACGGTATATT  87 161
JTM80_RS05425 1311052 .. 1311092 -  -6.2   -3.7347   GGGAAGAGGGAAGAA  CGAAGAACGAAGAGAGAA GAGGT TCCGGTTTTCGTTCTTCG  TTTTTCTTTCTCCGT  62 60
        uraD 1310414 .. 1310424 -  -3.2  -3.05844   TTTGCGACCGCAAGA                 CAGC GCA ACTG                 GAACTGGTCAGCGTT  44 62
JTM80_RS05415 1309793 .. 1309817 - -12.1  -3.60475   AACCCTCACCCTAAA          TCCCTCTCCCA AAG CGGGAGGGGGA          CTTCCAATCCGGCTC  82 221
JTM80_RS05410 NONE
JTM80_RS05405 1307128 .. 1307144 -  -5.8  -5.82172   ACGAACATAAAAAAA              GCGGGT GCGGA ACCCAC              TTCTGACAACGTTGC 100 156
        rimP 1306509 .. 1306523 -  -2.1  -3.16345   AAGTACCAAAAGAAT               CCATC GCACA AATGG               TAGATGCATACAGAA  42 47
        nusA 1304725 .. 1304768 - -10.3  -4.56597   TGGCTTCGGCAAAAA GCAC-AACAGGAGCAGACCC GCTGT GGGCTTGCTCCTGCGAGTGC CAGACATCGCTCTGA  90 107
JTM80_RS05380 1300576 .. 1300632 - -23.5  -3.51015   AACGAAAAATGAAGA CAGAAGAACGAAAAACGAAGAGAGA AAAACGG TATCTCTTCGTTCTTCGTTCTTCTG TCTTCATTGTTCTCT 100 70
JTM80_RS05370 1296021 .. 1296043 -  -7.1  -3.37796   TGCGAGTACCCACAA          GCCCAAAAGT TAGA ACTTT-GGGC           GCATCTGGCTGGATT  60 147
        trpD 1291305 .. 1291319 -    -5  -3.89085   AGAACGAAAAACGAA               TGCAGA AGG TCTACA               ATCCAGAGCGCACTG  61 99
JTM80_RS05350 1290469 .. 1290495 -   -21  -2.70932   TTGGGCTTTGAACGA         TTTCTCGCGGGC TGC GCCCGCGAGAAA         TCGTTCAACTGCGTA 100 83
JTM80_RS05300 1273467 .. 1273496 - -10.8  -3.38415   CGAACTAGAAACAGA       CAAGGAGCAATC CTGGGC GATCGCTCCTCG        TTTCAAGGCTTTAAT  75 75
        ilvD 1270400 .. 1270447 - -28.6  -4.89838   TTAATAAACATAAAA TCCAAAGACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TCAGGA TCTGTTTTTTAATCT 100 63
JTM80_RS05280 NONE
JTM80_RS05275 1267567 .. 1267584 -  -4.2   -2.5844   CGATATCAGATTAAT             CTCAAA GAGGGT TTTGAG              CGGGCAAAGAAAAAG  42 462
JTM80_RS05255 NONE
JTM80_RS05230 1259686 .. 1259699 -  -8.1  -4.10855   AAAACGCTGCCAAAA               GCCCT TTGC AGGGC                GATCGCCCTTCCTTC  74 277
        ilvB 1257383 .. 1257397 - -12.8  -5.16472   AAAAATGCGAAAAAA               GCGGGC ACT GCCCGC               TTTCTTGTTTTCTTA 100 232
JTM80_RS05215 1254674 .. 1254686 -  -3.3   -4.1899   TCAGCCCAGGCAAAA                CGAAC CGT GATCG                CGATTACATTCGCAA  60 290
JTM80_RS05195 1251592 .. 1251605 -  -5.2  -2.76492   TGATTTACGGCAAAT               CGCC GACGCT GGCG                TGGCTCTACGGGCTG  47 491
JTM80_RS05185 NONE
        wbaP NONE
JTM80_RS05175 1246806 .. 1246818 -  -6.3    -3.524   CAGCCAGCGAGAGAA                CTCTA GGG TAGAG                GCGAGGAATTGACTG  59 15
JTM80_RS05155 1242430 .. 1242474 -    -4  -3.63782   GAACAGCAGTTGAAA GACCTGATTGCAGCCCACGC CGATC GCACGGGCAGCGCCAAGGCC AAGCACATCCTGGCC  54 322
JTM80_RS05140 1235257 .. 1235270 -  -3.8  -3.98826   TCACCAACCCACAAA               CCTG ACTTGA CAGG                CTTGATTAATCCGCC  59 160
JTM80_RS05135 1234124 .. 1234158 - -11.4  -3.35962   TTTAGAGAAAAAGCA     GGCGTGTGCATTGAAC TGA ACTCTCTGCACACGCC     AAATTGCAAGTAACG  77 143
JTM80_RS05130 1233276 .. 1233302 - -15.2  -3.31461   TACGCAGTTGGACAA         TTTCTCGCGGGC GCA GCCTGCGAGAAA         TTGTCCAAAGTCCAG  90 210
JTM80_RS05125 NONE
JTM80_RS05120 1231138 .. 1231154 -  -5.1   -2.8474   GGTGAGGGACAACCA              GTGTGGA CGT TCCATAC              TCTCTCTCGATGTGG  48 476
JTM80_RS05115 1229984 .. 1229997 -  -2.3  -3.62096   CTCCACCACTCCAAA               CACCG TTAG CGTTG                TTGCTAATTGACTGG  47 29
JTM80_RS05110 NONE
JTM80_RS05105 1228310 .. 1228350 - -17.7  -3.01416   TACCACCGATAGAGA  GTCTCCCTGGAACAGACTC AAA GAAACTGCTCCAAGGAGAC  CAGAGACTAACCAAT 100 75
JTM80_RS05100 1226876 .. 1226890 -  -2.1  -4.90296   AAAACTTTACAAAAA              GCACTC TCAA GAG-GC               GGATTATTGAGAATG  68 407
JTM80_RS05085 1222101 .. 1222117 -  -4.3  -3.21395   AGTCCTTCCAGAACA              GGGCTAG CGT CCAGCAC              CCTCCGCACTGGCCG  50 109
JTM80_RS05050 1214637 .. 1214649 -  -9.1   -3.6849   ATGGAATGGGAAGAA                TGGGG CAA CCCCA                ACGACCCCGCCTTTT  69 401
JTM80_RS05040 1211436 .. 1211450 -  -6.4  -2.84634   GCCCAGAGCAGGAGA               GAGACT TCA AGCCTC               TCTTGCTCCCCTTCT  51 155
JTM80_RS05035 1208434 .. 1208459 -  -7.5  -3.23585   ATAGATAACAGGCAA         TGCTCAGGCGA TCGC TCGTCTGGGCA          TTTTTTTGCATTCGG  61 57
JTM80_RS05030 1207322 .. 1207333 -  -2.2  -2.85545   CTTCCAAGAACACTA                TCGA TGAT CCGA                 TGATGATCTGCTGAT  39 53
JTM80_RS05025 NONE
JTM80_RS05010 NONE
JTM80_RS05005 1200929 .. 1200948 -  -5.6    -3.737   GAATGTCTCAGCAAA            CCTTCCGC CGAT GCGGACAG             ATGCCTCCTATCTCA  58 346
JTM80_RS04990 1196196 .. 1196215 - -11.4   -5.4505   CGCCGCAACAAAAAA            GGTGCGAC CGAA GCCGCACC             TCTGCGAAGGAGATA 100 114
JTM80_RS04985 1195095 .. 1195107 -  -3.3  -3.01924   GAGGGGCCGGGAAGA                TTGGG AAA CCCGA                AAGCTCTTGTTAGAC  42 131
JTM80_RS04980 1193887 .. 1193898 -  -5.8  -2.94099   CCTGCCGATTACACA                CCAG ATTA CTGG                 GCAAATTTCGGGGGC  48 129
        larE 1190490 .. 1190510 -  -5.3  -2.93549   GAGCTTTAATAATGA            CGATACGCA AAC CGCGCAACG            CATTGGGCCGCGTGT  49 125
        acsF 1189229 .. 1189252 - -12.4  -4.59109   GACATTCGCCAAAAA          GCGGCCCTGC TATT GCAGAACCGC           TTTCTAGGGGGCCGT 100 142
JTM80_RS04955 1188620 .. 1188630 -  -2.4  -3.25072   GCCAGCAGAACTCAA                 GCTG AAC CCGC                 CAAATTGAGTGGGAA  44 76
JTM80_RS04950 NONE
JTM80_RS04945 1183831 .. 1183841 -  -2.4  -4.05926   CAATAAACCCAGAAA                 GCCG TAC CTGC                 TCTGGCCAAAGCGCA  55 56
JTM80_RS04940 1182503 .. 1182526 -  -5.3  -3.53444   TCACGCTGCTGGAAA          CGCTCGGACA ATACG TGCCC-AGCG          TGATTCAGAACGTGA  55 499
JTM80_RS04920 1179633 .. 1179647 -  -3.4  -4.19238   TCGGCAAGCCCAAAA               CCGCCG CCC CGGAAG               ACAAAGACACGGTTT  60 304
JTM80_RS04905 1176891 .. 1176929 - -16.3  -2.74196   CGAAACTGATACAAC   GAAATGGTGTGTAGC TGCCCGTTT GCTACACACCATTTC   CGCTCAGTTTGATGG  91 99
JTM80_RS04895 1173555 .. 1173568 -  -2.3  -3.52906   CGAGGTGGATAAATA               CCTGC GATC GCACG                GCTTCAAAAACTACA  47 516
JTM80_RS04885 1171188 .. 1171200 -  -2.6  -3.53343   AATCTGCTGCTCAAA                GCCG TAGCC CAGC                GCCTCTCCCGCTGCC  47 358
JTM80_RS04875 1165681 .. 1165692 -  -7.2  -2.72344   TTGCAGGTGGAAGCA                GGGG AAAA CCCC                 ATATTTTCAAAATTC  56 71
JTM80_RS04870 1165350 .. 1165379 - -12.9  -4.31904   ATAAAGCAAGACAAA       GAGGGACACAGCC TATC AACTGCGTCCCTC        TTTTGCTTGACAGAG 100 93
JTM80_RS04850 1158299 .. 1158315 -  -4.3  -2.64933   TAGTGATTCAGAGGA              GTGCCGC TAG GGAGCAC              CTACCTTGAAACGCG  44 382
        clpP NONE
        clpX NONE
JTM80_RS04835 1154933 .. 1154943 -  -6.8  -4.30719   CCCGGCCAGAAGAAA                 GCTG AGT CAGC                 AAGCTGAGTGAATGC  74 62
JTM80_RS04825 1153159 .. 1153169 -  -4.6  -3.76125   CCATCCCAATCGAAA                 CCGC CAA GCGA                 ATTGCCGACCAGCTT  56 472
JTM80_RS04815 1150745 .. 1150784 -  -8.5  -3.05384   CCTCCGGCCACCGAA  CCGAGCGATCGCCAG AGTTGCTGGG CGGGCGATCGCCCCG   TTTGGCGACCGGGCT  62 232
JTM80_RS04810 1149850 .. 1149864 -  -3.4  -3.66921   AATCTTAACTCCAAA               CCCCGC CTA GCGACG               ACGCAGCAGCGGGTT  52 17
JTM80_RS04805 1148690 .. 1148736 - -16.7  -4.89838   TTAATAAATATAAAA CTCAAAGATCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGT-TC-AAG ATCTGTTTCTTAGAG 100 243
JTM80_RS04785 1146897 .. 1146923 - -13.1   -4.6038   TACATGAAAGCAAAA         TGGGGCGAGTT GCTTT AACTCACCCCA         CTCTCTGACGGGCCA 100 33
        gatB 1140952 .. 1140965 -  -5.2  -3.24365   GGAGAGCGCAGAATA               GCGG TGATAG CCGC                CGGGCTACCCGTCCA  53 30
JTM80_RS04760 1138107 .. 1138125 -  -7.4  -3.85254   CAGTATGACAAAAGA             CGTGCAAG CTA CTTGCAGG             CTACTTGCAGTCCCT  69 224
JTM80_RS04755 1135327 .. 1135337 -  -5.4  -3.87373   CACATGCCCGACAAA                 GCAA TCT TTGC                 CAAGGAACTGATGCG  61 456
JTM80_RS04730 1132196 .. 1132220 - -12.1  -4.07687   AGGCTGTCGCCAAAA          CAACGGCCCCC TGC GTGAGCCGTTG          GCAATCCGTCTCGCT  90 72
JTM80_RS04725 1129141 .. 1129151 -  -5.4  -3.61178   GGCATTTAGTGGAAA                 TGCT GCG AGCA                 TCGGAGCCTGTGGGC  55 516
JTM80_RS04710 1124179 .. 1124206 -  -8.5  -2.52464   TCTTCGCCTAACGTA        GCCTGTCGCAGA GGCTA TCTGCAAC-GGC        TTTTAAAGCAAATCC  58 61
JTM80_RS04705 NONE
        thiS 1121724 .. 1121748 -  -2.7  -3.17901   ATACTTCTAATGTAA          CGCGCTCCG TTTTGCG CTGAGGGCG          GCTAGCAGTGGGTTT  44 134
JTM80_RS04695 1120503 .. 1120526 - -12.6  -5.77853   AATTCGTAAAAAAAA          TAGGGATTGA AGGC TCAATCCCTA           ACGTATCCCATTATC 100 51
JTM80_RS04685 1118198 .. 1118228 - -11.1  -4.44797   GCAGTAACAGCAAAA       GCGCCACGCTG AACATCTAA CCGCGTGGCGC       TTGCATAATGGCTTG  95 238
        glpX 1111597 .. 1111618 -  -7.3  -5.38348   AAAAAGAGCAAAAAA           GAGCCAGAT CGGA ACCTGACTC            TTTCGCAGTTATTGA 100 59
JTM80_RS04650 1110629 .. 1110639 -  -4.6  -3.32946   TGCTGAACCAGAATA                 CGCC TAC AGCG                 GCCATCGACGCAGCG  51 131
JTM80_RS04630 1104736 .. 1104756 -  -3.2   -3.2362   GAACGGCTAGAAAAG           GCGATCGCC CAAT GGC-AGCGC            GTGTTTAACTACGAC  45 178
         lnt NONE
JTM80_RS04610 1099404 .. 1099421 -  -3.5   -3.0644   AGGCAAGGGGCAATA             CATTAAC AAGT ATTAATG              ATTGTAAACTCCTTT  46 85
JTM80_RS04605 NONE
JTM80_RS04600 1097375 .. 1097405 -    -4  -4.07877   GGATGCCATAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  59 53
JTM80_RS04595 1095909 .. 1095921 -  -3.3  -3.64703   CCGCCTGTATGGAAA                CTGGT ATT ACCTG                GAAAGCCTCGCCCCT  52 323
JTM80_RS04570 1089581 .. 1089615 -  -4.9   -2.7083   GAGGCTACAAATGGA     TGACGTGTGGTATGG CGTTT CTACACCGCACGTCG     AAGCCTTTCTCTGTC  44 74
JTM80_RS04560 1086725 .. 1086742 -  -3.4  -3.22223   TAAGCGCATCATTAA             GCGCAT CATTTC ATGCAC              AGATTCTCCATCGCT  46 39
        hypA 1086187 .. 1086197 -  -6.8   -4.2828   GCCGAGTGAGTAAAA                 GGCA AAA TGCC                 GAGTTACTTACCGGA  74 33
        hypB 1085317 .. 1085327 -  -6.8  -3.60098   AGCCCTGATTGCAAA                 CCCT GCT AGGG                 GGCGATCGCCATTGA  62 20
JTM80_RS04545 NONE
JTM80_RS04540 NONE
JTM80_RS04535 1081525 .. 1081567 -  -4.4  -3.50853   TCTGTTTAATCACAA CATCTGTTTAATCAAATTAA TCA TTAATCAAATTAATCAAATG AAGTTAATCAAATGA  54 101
JTM80_RS04530 1080929 .. 1080952 - -12.4  -5.07652   TGGCGTAAAACAAAA          GCTCCCCGCC GATT GGCAGGGAAC           TTCTTTAGAAAGTAG 100 80
JTM80_RS04525 1078919 .. 1078973 -  -5.9  -5.17576   TAGTAAGCCAAAAAA TAACAGCAGTTTTCCGTGAGCGCACA CCTT TACACGCTCACGGAAAGCTT-TTTTA TTTAGCGCTTGCCCA  86 200
        murJ NONE
JTM80_RS04470 1068362 .. 1068374 -  -4.1  -2.65815   GGGAGAGGGAGAGCA                GAAAC GAC GCTTC                CAAAAGCCTTCTGAC  43 121
JTM80_RS04465 1067507 .. 1067518 -  -5.8  -2.88544   CCGCATCGCCACATA                GCGA ATCA TCGC                 CTACTCTCCCAGCAG  52 26
JTM80_RS04460 NONE
JTM80_RS04455 1065957 .. 1065967 -  -4.6  -4.07537   AACAAACCCAAACAA                 CCCC AAG GAGG                 TGAACCCACGATGAC  61 324
JTM80_RS04445 1064096 .. 1064118 -  -3.5  -4.56597   GGGTCTTTGCAAAAA          GC-GG-GCTTT CCG AAAGCGCCTGC          GCTGCAAAGGGGGCG  66 97
JTM80_RS04440 1062043 .. 1062073 - -12.7  -2.91274   GCTAGGCCAAGTAGA      TGCGGCC--CTGGAG TCG CTCCAGCAGGCCGCA      GAGATTGGCCAGGCG  74 166
JTM80_RS04395 1050565 .. 1050579 -  -8.5  -3.15544   CTGGATTTTCAGGAA               GCGGG CACGC CCCGC               ACCCATCGCCGCTTT  60 302
JTM80_RS04385 1048251 .. 1048262 -  -5.8  -3.54602   CAAGTAACAGGATAA                CCAG ATGA CTGG                 GATAGATAACGACTG  59 46
JTM80_RS04375 1043729 .. 1043745 -  -2.9  -3.55582   ATAACATTTAGAGAA              GATTCGC GTT GCAATTC              GCTGAAACATTCCGA  49 59
JTM80_RS04370 1042667 .. 1042682 -    -4  -3.12847   AATAAACCTATGCAA              CTCTAG TTTT CTAGAA               TTTTCCAGAATTTTC  46 40
JTM80_RS04365 1039433 .. 1039479 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 281
JTM80_RS04355 NONE
JTM80_RS04350 1036754 .. 1036772 - -13.2  -2.73635   GAAACCGCCTTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCTTG  79 132
JTM80_RS04340 NONE
JTM80_RS04335 1033488 .. 1033543 - -16.8  -5.23316   GACCAGATTAAAAAA CAGATCCTGA-ACCCTGCGCCGCCCGC CGC GCGGGCGGCGCAGGGTCTTTGGGTTTT ATACTTATTAATGTC 100 354
JTM80_RS04300 1024401 .. 1024417 -  -3.5  -3.41051   TGATCCCCACCAGAA              CCGAAGC AGA GCGGCGG              ACAGCACATGATTCC  50 305
JTM80_RS04295 1022630 .. 1022649 -  -3.4  -4.33417   GTCATGCAGAATAAA            CTCCTGGC TTGC GCCGGTAG             GAAAAATGTAGAGAA  61 63
JTM80_RS04290 1021578 .. 1021601 -  -3.2  -4.20516   GTTCGACCGAAGAAA          CGGGT-TTTGT CAT ACAAATACCTG          CAAGAAACAGTTTTG  59 216
JTM80_RS04285 NONE
JTM80_RS04250 1010240 .. 1010268 -  -5.9   -3.3323   TAAGATGAAACTCAA        TGACCCTGACACT TGG AGTGTCCCGGTCG        AAACCGTTGAAGTCG  55 370
JTM80_RS04235 1007773 .. 1007799 -  -7.2  -2.72344   CTGGATTTTGAATGA         TTTCTCGTGGGC TGC GCCCGCAAGAAG         TCGTCCAACTGCGTA  56 250
JTM80_RS04220 1004578 .. 1004598 -  -2.5  -3.04026   AGATGAATTAAAGTA            GCTCAACGA GAA TCTTTGAGA            GTATGAGAACCGTTC  42 7
JTM80_RS04215 1002546 .. 1002572 -  -9.4  -3.31461   GACGCAGTGGGACAA         TTTCTCGCGGGC TGC GCCTGAGAGAAA         TTGTCCAAAACCCAG  67 71
JTM80_RS04205 NONE
JTM80_RS04200  999848 ..  999860 -  -2.6  -2.85361   GCAGGCAAAAACCGA                GCGC AGGGG ACGC                AACGCGCTAGAGTTT  39 82
JTM80_RS04195  997818 ..  997834 -  -3.6  -4.42386   TGCTTATGTAGAAAA              GCGGCT AAGCA AGCAGC              AGTGTTTGGTTGGTA  68 102
JTM80_RS04185 NONE
        sppA NONE
JTM80_RS04175  993435 ..  993452 -  -4.1  -3.54459   TTAAGTTCCCTGAAA             CTCTCTT AAAG AAGGGAG              ACTTGCCGGAGAAGG  52 159
JTM80_RS04170 NONE
        cofH  991392 ..  991406 -  -3.5  -2.95223   CAACTCCATCACAGA               GCCAT CTGCC ACGGC               AGGAGCAGACTCGCG  45 121
JTM80_RS04160  990284 ..  990308 - -14.3  -5.16472   AAAAAGCGCAAAAAA          GGCGTACCCGA TGC CCAGGTACGCC          CCTTGCCAAGACTTC 100 66
JTM80_RS04155  988541 ..  988557 - -10.1   -3.5764   AACGGCAGCCCCAAA              GACTGGC AGC GCCAGCC              CAACGGCAACTTTCG  71 508
JTM80_RS04145  987594 ..  987604 -  -3.2  -3.66178   GCTGCCAATCCCAAA                 GAGT TTG ACCC                 CCGCCACTTCCTGAA  52 200
JTM80_RS04135  985454 ..  985475 -  -2.8  -4.05788   TTGTCGTAAAGCAAA           GCCTAGCC TGGGGT GGCGTGGC            TTTTCCAGCGGCTTT  56 373
        glsA  983032 ..  983048 -  -2.9  -3.81414   ATGGTTAATCAACAA              CCCCGCA TAT TGCGAAA              TGTTGCGAATACTTG  54 385
JTM80_RS04115  982141 ..  982180 - -12.1  -4.41114   CCAGGAGACAAGAAA  GTGCCCAACCGCCTGAC TAATCT GCCAGGATGCTGGGCAC   TTGTGCCATGCTTTG  95 131
JTM80_RS04110  981245 ..  981255 -  -2.4  -3.06696   CGCCCTTCCAAGACA                 GCGG TTT CGGC                 TTTTGCAATCGCTGT  42 69
JTM80_RS04105 NONE
JTM80_RS04100  979798 ..  979808 -  -4.6  -3.53811   GCTAGTGTTCCCAAA                 GACG GCC CGCC                 GATCAAACGAAGTCG  54 126
JTM80_RS04095  978172 ..  978223 -  -7.2  -5.43621   AGAAAGCAGAAAAAA TGCCCCCTGGGCCAGAACTTCCACC ATC GGCAGAAAG-CTGACTCAAGGGGCG ATCGCCATTCGCCAC 100 157
JTM80_RS04085  976476 ..  976495 -  -2.1  -4.53398   GAACATCAAAAAGAA            CCCAGACA AAACA CG-CTGGG            TTATTCTTGGATTAA  62 161
JTM80_RS04080  975259 ..  975270 -  -3.6  -4.07687   AGCGCTGGGTGAAAA                GAGC GATC GCCC                 TGGGCTACAGCAAGT  60 269
JTM80_RS04070  972152 ..  972163 -  -5.8  -5.24129   TTTTGGTAGAAAAAA                TCGG ATTT CCGA                 AGCGACATAACACCT  90 171
JTM80_RS04060  971579 ..  971589 -  -6.8  -2.62439   AAGATTCCGAAACAT                 TCCG AAA CGGA                 GAGGGTGGGATTCGA  52 22
JTM80_RS04050  969805 ..  969823 -  -7.4  -3.54424   GTCGATCCCCCTAAA             TCCCCCTT ATT AATGGGGA             CTTCCGGAGTGGTTC  64 135
        glnT NONE
        recF  967003 ..  967039 -    -8  -3.73953   ACGACTGGCAGCAAA    TTGAGCAGGTTTCGGG GCGAT CGCGCAACTTGCTCAA    CCAAATTGGCGACTG  66 59
JTM80_RS04015  962007 ..  962026 -  -9.3  -4.36778   AAATATAAGCCAAAA            GGTCTGC TCTTGG GCAGACC             TTTTCAATTTCAAGT  83 358
JTM80_RS04005 NONE
JTM80_RS04000  958645 ..  958671 - -11.6  -3.61398   CTGGGTTTTGAACAA         TTTCTCACGGGC TGC GCTCGCGAGAAA         TTGTCTAACTGCGTA  79 324
JTM80_RS03995  956962 ..  957003 -   -11   -3.5944   GCAAAAAAGCGAGAA GGGTAGATCTTTCGCACC CGATAC AGTCCGAAAAATCCACCC  CAGGAACCGTTGAGC  79 49
JTM80_RS03990  955722 ..  955753 -  -5.1  -4.42238   CGAGGTCAACGAAAA      CTTGGA-CGAGCGC CCCGT GCGATCGCTCCACG      CCCTGGGCGCATCCG  70 362
JTM80_RS03970  950212 ..  950223 -  -7.2  -3.27475   GTTGTTAGTACAATA                GGGC GATC GCCC                 CAGCCGTAGCACTCC  61 172
JTM80_RS03965  948288 ..  948340 -   -17  -3.41125   GGCACAGAGCCATAA TGCCTCTGCGGCGGGGTG-CTGG ACTGGCTG CCAGACTTCCCGCCGCAGGGGCA TTGGTTTGCGTTCAG 100 91
JTM80_RS03950  942944 ..  942955 -  -2.2  -3.53091   ACTTGCCTTCGCAAA                CCCT GGAA AGAG                 TCAGATTTGGAGCGG  47 176
JTM80_RS03935  939226 ..  939238 -  -6.9  -4.25104   CCGGCGCGACGAAAA                GGCGA TCG CCGCC                GAAGTCCGCACCCGC  71 191
JTM80_RS03920 NONE
JTM80_RS03915 NONE
JTM80_RS03910  933968 ..  933982 -  -2.8  -3.66874   GGAACTCGACCCAAA               GTGG CGATCGC CCAC               GCTCTCTATACCAAC  52 374
JTM80_RS03850  921913 ..  921959 - -15.3  -4.17516   GGCAAAGGATACAAA CGAAAGGGCGATCGCCATTTCC GCAT GGAAGCG-CGATCGCCCTTTTG ATTAGGTTTTTGCTC 100 111
JTM80_RS03840  918885 ..  918900 -    -4  -2.98823   CTGCCCTGACACAGA              CATGAC ACAG ATCATG               GCTCAGAATTCCCTG  45 166
JTM80_RS03835  918641 ..  918652 -  -7.2  -3.81027   GGTAATGAAGGTAAA                GGGC GATC GCCC                 TCTATCTTCCCCTTC  69 41
JTM80_RS03830 NONE
JTM80_RS03825  917018 ..  917039 -  -7.1  -3.77196   GCATCAGCTACGAAA           TCGCCGGCC GCAC GGCTGGCGG            AGATTCTGGGTCAGA  63 280
JTM80_RS03795  908511 ..  908523 -  -7.7  -4.08945   ACCAGCCCTGGAAAA                GCTAG AGG CTAGC                TCTTGCACATGACAC  71 21
JTM80_RS03765  901545 ..  901559 -  -3.6  -2.52623   GCTTGGTGACAACAG               CAACAA GAA TTATTG               AACTCAGCCTGAAAA  42 136
JTM80_RS03760  900671 ..  900683 -  -9.1  -3.31322   GCGAATGCCTCAGAA                CGGCT TGG AGCCG                TGGTCACGCTCGATG  63 349
JTM80_RS03750  898766 ..  898781 -  -2.4   -5.1861   GTGACCATGAAAAAA              TCGCGC CTGG GCACGC               TGATTACGGTGATTT  80 367
JTM80_RS03740  895816 ..  895835 -  -3.5  -3.73647   CCTATTCAGGAATAA            CTGCCAG GAATAA CTGCCAG             GAATAACTGCGTGAA  54 243
JTM80_RS03700  885840 ..  885858 - -13.2  -2.73635   GAAACCGCCTTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCTTG  79 80
JTM80_RS03695  885155 ..  885208 - -13.2  -3.21595   AACTTGTAGGACGAA CTTGTAAGACGAACCGGAGCAATC CGGTTT GTTCCCTCCGGTTCGTCTTACGGG GTTACGCAAGGCTCA  83 38
        dnaK NONE
JTM80_RS03680 NONE
JTM80_RS03670  876638 ..  876659 - -12.3  -3.75418   GATAGAAACTGGAAA           GGGGCACAC CGGA ATGTGCCCC            CCAAAATGGCGAAAT  85 85
       ftsH4  874530 ..  874551 - -12.3  -5.42259   TTAGTCGCAAAAAAA           CGCACCTGG TTTC CCAGATGCG            CCCCAATGAATTGCC 100 87
JTM80_RS03660  872608 ..  872619 -  -5.8  -2.87683   AGATGCGCTGACAGA                TGGC TGAT GCCA                 GCGGAAGCCGCTATC  52 36
JTM80_RS03645  868746 ..  868758 -  -5.5  -3.65201   CAAGACGCGGAACAA                TGGGC AAA ACCCA                CTAGGGCGATCGCTC  56 230
JTM80_RS03640  868236 ..  868258 -  -4.8  -5.06735   CAGAAAGCAGAAAAA          GCCACACGC TGGAGG GCG-GCGGC           CTGGGGTTGGATAGT  80 160
JTM80_RS03635  866053 ..  866073 -  -3.8   -3.6502   GAGCCGCTATCCAAA            GGCTGCCG TTTGC CGGATGCC            GCTGATGTTTGGCGC  54 424
JTM80_RS03625  864813 ..  864852 - -10.2  -3.93673   CAAAGATTTTAGAAA  CTGA-ACACCGCTCGCA GCATTTG TGCAAGCGGTGTATCAA  CATCCAGGGTAGGTC  82 190
JTM80_RS03620  861676 ..  861686 -    -4  -3.42996   CACCACTCAGGAGAA                 TTGA TAT TCAA                 GGGCCGGTTTGCAAG  50 162
JTM80_RS03610  859011 ..  859035 -  -3.6  -3.02324   GCGACTGAAATCATA         GCACCGTTTGC AGGA GCAAAC-ACGC          AGAGTCACGAATGTT  45 109
JTM80_RS03605  858061 ..  858088 -    -2  -3.83026   TGGGGGGATAGGAAA        GGGATC-AGTAAC TTT ATCTCTCGATCCC        CTGCTTGCTCTCTAT  53 53
JTM80_RS03600  857108 ..  857128 -  -2.6     -3.54   ATCACCGGACAAAGA            TTGCTACA CCTGT TTTAGCAA            GCTGTCCTGATTTTG  47 71
JTM80_RS03595  856237 ..  856254 -  -3.3  -3.24879   TCCAAAATCTAAAAC             CCCAAAG CTGG CTCAGGG              TGAAGCAGGCGTGCA  46 20
JTM80_RS03590  855655 ..  855668 -  -2.3  -3.45742   CGACGACCAAGAAGA               GGAGC GGAC GCTGC                CTGTGTTTGATAATC  46 286
JTM80_RS03570  851461 ..  851471 -  -4.6  -4.57073   CAGCTTTTCCAAAAA                 CGCC CCA GGCA                 GGACTCGAACCTGCG  68 14
JTM80_RS03550  846529 ..  846542 -  -3.7  -3.49777   GGTGAGAGATCAGAA               GTGGC AATC GCCCC                GACCTAGACCTTGCT  52 29
JTM80_RS03535  842988 ..  843002 -  -4.2  -2.52543   ACGTTGTCCAAGCCA               CATCCG TAG CGTATG               TGATTCAAACTACGA  44 253
JTM80_RS03530  842745 ..  842756 -  -7.2  -3.07013   TAGTGTGCTAAGAGA                GGGC GATC GCCC                 CTCTGCGCTACTCCG  59 33
        accD  841622 ..  841636 -  -4.2   -3.4285   CTATCGAAGCCACAA               CGAGAT TAC AACTCG               TGGGGAATTTTGAGT  52 16
JTM80_RS03520  841058 ..  841069 -  -5.8  -2.87211   ATGGGGGGGTAGAGA                TCCC GCAT GGGA                 GGAGAGAGAAAAAAG  52 140
         pip NONE
        bchD  837821 ..  837834 -  -3.7    -3.737   GAAGCCTTGACCAAA               CTGCG GAAG CGCCG                GGCCGACATTCGCGA  54 148
JTM80_RS03490  832252 ..  832268 -  -4.3  -2.73124   GCTGAGGGTTTAAAG              CGGGTGG CTC CGACCCA              GGAAGCACACCCCTA  45 53
        clpP  831516 ..  831528 -  -4.1  -2.89055   GAAAGCCTCCACACA                GCTTC CAC AAAGC                CCCCACTAAGCCCCC  45 49
JTM80_RS03465  826068 ..  826102 - -10.6  -2.64045   CTACGTGAACAACAT     GCCGCTGCCGATGG GCAACCG CCACCGCCTGCGGC     CGGGCGATCGCATCT  62 189
JTM80_RS03455  823791 ..  823844 -  -9.6  -3.87364   GTCACAACAACAGAA CGGCAACGGGGCTGGCAAGCG CGAGAATAAGAAT CGCCTGCTGGCCCCGTT-CCG CTTCGAGTTTAGCCC  78 89
        tatC  822355 ..  822374 -    -7  -3.21099   TCTTTGGAGCATGAA            CCCGGCCG CTAT CGGCCCAG             CAGCTTCACCATGCC  58 14
JTM80_RS03440  821069 ..  821082 -  -8.1  -3.86194   AAGGTTCGGCAGAAA               TGGGC GATC GCCCA                ACGTTAAACCCAAAA  72 74
JTM80_RS03435  819981 ..  820001 - -11.1  -5.02074   TTAGTGCCCAAAAAA            GGGCGCTCC AAT GGAACACCC            TTGTAGCTATCAACC 100 58
JTM80_RS03415 NONE
        xdhA NONE
        xdhB  809395 ..  809410 -    -6   -5.9663   AAAGAGCAAAAAAAA              GGGGGC GATC GCCCCT               CCATTCACAAAACTT 100 85
        acpP NONE
        fabF  807124 ..  807136 -  -4.1  -3.70902   GGGCGGATAGGCAAA                CAGAA GAA TCCTG                AATCACCAAAGGCAT  54 352
         tkt  804977 ..  805005 - -10.2  -3.66095   AAAGTCCTATGCAAA        GCCCAGCCAAGA GCGAA TCGAGGCTGGGC        TTTGGAAATGGTTTA  80 54
        mrdA  797702 ..  797722 -  -2.4  -4.50686   CGAAAAACTAAGAAA            GACTGGGA ATAGA TCCCCGGC            TCAAAAGCCAGCCGT  62 262
JTM80_RS03345  796023 ..  796052 -  -6.6   -3.8637   GTAGACGATAAAAGA      CCCTGGCAGAAGAT GGGA ATCTT--GCCAGGG       TTTCTGATGAAGCTA  67 58
JTM80_RS03330  792928 ..  792938 -  -5.4  -3.26319   AATGCTTGATACGAA                 TCCT GAG AGGA                 ATCCCCACGAAAACT  53 97
        mreC NONE
        mreD NONE
JTM80_RS03315  790515 ..  790541 -   -16  -4.81851   ATCCAAATCCAAAAA         GCTGCCGTTGAA CCC TTCAACAGCAGC         TCTCAAGCTAGCCAA 100 203
         pgl  780332 ..  780348 -  -5.8  -3.56643   GGGATATCTCCCAAA              CCCCCT TTTGC AGGGGA              CGAAGCGTCCCCCAC  59 327
JTM80_RS03265  777985 ..  777998 -  -2.3  -4.26344   ACAGGTGGAGGAAAA               TGTGC TGAT GCCCA                AAATCATGCAGGGGT  62 201
JTM80_RS03255  775570 ..  775616 -  -2.3  -5.00884   AGGCTGCCTAAAAAA CACAAAACCAGCAGTTG AATGGCCGTCTGG CCGCTGCTGGTTTCGCG CTGGATTCGTCGATT  70 77
JTM80_RS03250  774218 ..  774259 -  -8.2  -4.09739   TTAACTTTGCTAAAA GTGCCTGTAT-CACTCGAAA GAAT CTCCG-GCGCATACAGGCAC CTGACAACGCTACAC  74 41
        cysT NONE
        cysW  772358 ..  772368 -  -2.4  -2.78816   CTATTCGGCAGCACA                 GGTG CTA CTCC                 TCAACGTCTTTAATG  39 19
JTM80_RS03235  771933 ..  771958 -  -4.7  -4.49716   AAAGAAAACCCAAAA         TCGGCAATCCA AAAT CGGATCACCAA          CCGTCAGGGCGATCG  68 19
JTM80_RS03200  765080 ..  765112 -  -4.7  -2.97925   ATCCCACACCACACA      GCTCTTGGTCCTCCC AGG AAGAGGACTTCGAGC      GGTCAAACCTCATCT  47 28
JTM80_RS03195  764156 ..  764194 - -18.2  -3.53091   ATGCTTTTCTGGAAA   CGTGCATCGTTGGGCAGC ACC GTCGCCCAACGATTCACG   CAAGAGGTCTAGTGT 100 88
JTM80_RS03190  762735 ..  762746 -  -2.2  -3.96148   TTTGCCCACGACAAA                CTCA GCAG CGAG                 AATTGGACAATTGTG  56 513
JTM80_RS03180  761547 ..  761570 -  -3.2  -3.92659   GCGCCAAAACTCAAA          GCAACAGC-AT ACT ATGGCTTTTGC          GCTGAAATAGTACGG  54 51
JTM80_RS03175 NONE
JTM80_RS03170  759841 ..  759852 -  -3.6  -4.37534   AAATGCACAGCAAAA                GCGC TACA GCAC                 CTTCTCCAAAAACTG  64 17
JTM80_RS03135  751030 ..  751040 -  -2.4  -3.76492   GCCAACCTCATCAAA                 CAGG CAG CCAG                 ATAGCGGCAGAACCC  50 40
JTM80_RS03130 NONE
JTM80_RS03125 NONE
JTM80_RS03120  747687 ..  747703 -  -2.9  -2.94924   CGTTCACTCATAAAC              TAAAGCC CCT GGCTCAA              CGCATAGAATTCGCG  42 284
JTM80_RS03115 NONE
        ybeY  746587 ..  746601 -  -4.2  -3.14149   GGATAAGACAGAAAT               CTAGGC ATT GACTAG               TAGGCGATCGCTGAG  48 254
JTM80_RS03105 NONE
JTM80_RS03100  745416 ..  745436 -  -8.2  -3.29251   GAAACAGGCAGAACA            GCTTGGCG GCTCG CGCCTAGC            CCACGGCCGCTGGAC  64 21
JTM80_RS03080  740785 ..  740799 -  -8.5  -3.53343   AAGCCTTCCCCCAAA               CCCCC TGCTT GGGGG               ACGAAGCGCGTCCCC  67 371
        speA  737701 ..  737741 - -12.8   -5.1971   ACGAAAAATGAAAAA  TGAAGAACGAAAAACGAA CCCTC TTCGCTCTTCGTTCTTCG  CTCTTCGTTCTTCCC 100 54
JTM80_RS03060  735690 ..  735716 - -19.6  -3.28712   TTGGGCTTTGGACAA         TTTCTCGCAGGC GCA GCCTGCGAGAAA         TTGTCCAACTGCGTA 100 65
JTM80_RS03055  734611 ..  734657 -  -4.3   -3.5394   AAACCTCGTGGTAAA TCGCCAGGACGAGGCAAGGGGC ACAA GCCAACT-CCTCGTCCCTGCTA TCCGATGGTCAAAAA  51 361
        radC NONE
JTM80_RS03040  731451 ..  731465 -  -3.5  -3.30212   AACATGAACGACCAA               CCGAG CTAAT CTCAG               ATCTGGTCAAGCAAC  45 490
JTM80_RS03025 NONE
JTM80_RS03020  728074 ..  728119 -  -8.1  -4.13767   CGGGGCAGTGGAAAA CGCGGCAGTCGCCTG-GCGAGT TTC AGTCGCTCTGGCTGCTGCTGCG TGCGTTGCTGAAGCC  74 103
JTM80_RS03010  723760 ..  723787 -   -12   -3.8766   CGAGAGCATATTAAA        GTGGCTCGAAAC CCTT GTCTCGAGCCGC         AGAGATGAATAAAAC  86 123
JTM80_RS03005  723466 ..  723479 -  -5.3  -4.57073   CACGCCGCCCAAAAA               GATCT GAGC AGATC                GTGGAATGTAAACAT  71 91
JTM80_RS03000 NONE
JTM80_RS02995  720312 ..  720332 - -10.4  -5.45802   TCCCCAAAACAAAAA            CGGCGACA CTTTC TGCCGCCG            TCTTTCTTGAGCGAT 100 253
JTM80_RS02990  719052 ..  719064 -  -3.3  -3.73402   AGACGCGCCAGCAAA                CCAGC AGC GCCAG                GGAGATATAGCCAAG  52 301
JTM80_RS02985  718289 ..  718329 - -24.9  -3.02043   AATGCTTTTCTAAGA  GCGTGAATCGCTGGGCAGC ACC GCCGCCCAACGATTCACAC  AAAGGAATCGGCAAA 100 68
        malQ  715584 ..  715594 -  -2.4  -3.97042   CGAGCAGGAAGCAAA                 GCCC ATC GGTC                 AACCTGGAGCCGTGC  56 384
JTM80_RS02950  709707 ..  709724 - -10.5  -5.24531   ATTGGGCACAAAAAA             GCCCCCC AGCA GGAGGGC              GCAGGTGATCTGGCT 100 177
JTM80_RS02935  706413 ..  706427 -  -2.1  -2.52676   CATCTTGTTAATGCA              GCTAGC GAAT GC-AGC               TAGGTCAGTGCCGGA  38 25
JTM80_RS02930 NONE
JTM80_RS02925  704895 ..  704915 -  -5.6  -3.85698   GTTCGCTCCTAGAAA            TTTCAATT TGAAT AATTGAAA            GAATGATTGAAATCT  61 40
JTM80_RS02920  703858 ..  703902 - -23.1  -2.92642   ATTAGGACTTACACA GTTGGACAATTTCTCGCTGGC TGC GCCCGCGAGAAATTGTCCAAA ATCTAGAAAGCTTAT 100 199
JTM80_RS02910 NONE
JTM80_RS02905 NONE
JTM80_RS02900  697916 ..  697936 -  -3.1  -4.37092   ATCGCCTCTACAAAA            CCCAGGGCG AGT CGCCCTACC            AACTACCGCTCAGCG  64 249
JTM80_RS02885  696401 ..  696417 -  -3.6  -3.36749   TACCCGTAAGATGAA              GTGACC CATCC GGTCGC              CAAACGTGACCAAAC  50 193
JTM80_RS02880 NONE
JTM80_RS02875  695637 ..  695656 -  -7.8  -3.14211   AGCGGGCTGGATTAA            GCGGGTTG ATGG CAAACCGC             CTCGATGCGATACCC  59 2
JTM80_RS02840 NONE
JTM80_RS02835  686168 ..  686184 -  -7.9  -4.26076   CTATCGGCACGAAAA              GATCGGC TAG GCCGAGC              TTCAAATCTTGGATT  74 74
JTM80_RS02825  684485 ..  684499 -  -5.6  -3.61517   ATGCGGTTTGAAGAA               CACCCG GAT CGAGCG               CCCATTACCGCAGCC  56 66
JTM80_RS02820  683874 ..  683890 -  -5.1  -2.71712   CGGGTGTCGTGAAAT              TCACTCC GGG GGACTGA              GAAGACTTCTCCTCG  48 90
JTM80_RS02815  682085 ..  682114 -  -7.2   -2.5547   ATGTGCGACAGCAAT       CGCC-CATCGC TGAACCTGC GCGATGTGGCG       GAGTTTGTGGTGGTT  50 508
JTM80_RS02790  672132 ..  672153 -  -2.1  -3.68351   CCCCCACCACCGAAA           CCCAGGTGC AGCC GAACCCTGG            CAGCGCGGCGGATTT  51 266
JTM80_RS02755  662917 ..  662929 -  -6.9  -2.62616   GCACCCGCCAGACCA                CAGGC AAC GCCCG                GCCTCGATGCACCAC  52 459
JTM80_RS02750  661992 ..  662024 - -17.7  -3.65714   AAATCAGATTCCAAA      CCCTGCACCGCGCAC TGT GCGGGCAGTGCAGGG      TTCTTGATGTTATGT 100 115
JTM80_RS02745  660444 ..  660491 -  -8.6  -4.93595   AGAAAAACCGAAAAA CGAAGAGCGAAAAACGAAAA CTGGAATC CCTTCGCTCTTCCCTCTTCG TTCTTCGTTCTTCGT  90 89
JTM80_RS02730  656988 ..  657005 -    -4  -2.51464   GCATCAGCGATTAAT             CGGCGG TTATCC CCGCAG              CCGCGCCTGCGTCTC  42 14
JTM80_RS02725 NONE
JTM80_RS02720 NONE
JTM80_RS02715 NONE
JTM80_RS02710  653655 ..  653666 -  -2.2   -3.2056   ATCCACAGCGAGGAA                TCGC TCCG GCAA                 ATCCTTAATCGGCTG  44 356
JTM80_RS02700  651946 ..  651956 -  -5.4  -4.35926   ATTGCAAATCGAAAA                 TCGA GAA TCGA                 TAAACGCCAAAGGCA  69 141
JTM80_RS02695  651364 ..  651390 - -22.4  -3.31461   TACGCAGTTGGACAA         CTTCTCGCGGGC GCA GCCCGCGAGAAG         TTGTCTAAAATCCAG 100 82
JTM80_RS02680  648213 ..  648225 -  -3.3  -3.92373   GAGCTGATTTATAAA                GTAGC TAA GCTGC                CAAGCGCTTGAGCAT  54 17
JTM80_RS02675 NONE
JTM80_RS02670 NONE
JTM80_RS02665  642037 ..  642052 -  -6.1  -2.77861   TCAAGGGAAAACTCA              CGGTG GACGCG CACCG               TCCTTCAGGGGCCAC  49 258
         pta NONE
JTM80_RS02630  634905 ..  634916 -  -3.6  -3.53224   CACGCGGCCTGCAAA                CCCG AACC CAGG                 CCTGGCGATCGCAGG  52 141
JTM80_RS02600  627676 ..  627688 -  -4.1  -2.90723   GTAGGTTGAATGATA                GCTTG GAA CAAAC                CAGACAGCGCGAACT  45 125
JTM80_RS02595 NONE
JTM80_RS02590  625723 ..  625741 -  -6.7  -2.93089   CAGGAGGGGAAAGGA            GTG-GGGC GATC GCCCGCAC             TGGATTAGACCAAGA  51 30
JTM80_RS02580  625366 ..  625381 -  -3.9  -2.89267   GCGAACGACAGGATA              GCGAC AGGTTA GCCGC               GCCTGCGAACGCCCG  45 18
JTM80_RS02575 NONE
JTM80_RS02570  623916 ..  623927 -  -4.4  -3.53444   CCACCGGGCCCGAAA                TCTG GATG CAGA                 CAGACGGCAAGATCG  53 498
JTM80_RS02545  619174 ..  619191 -  -4.1  -3.72893   TAGGTTGGTAGTAAA             CGCTTTA GCGC TGAAGCG              CGTACTACGAGCCAA  54 128
JTM80_RS02535 NONE
JTM80_RS02525 NONE
JTM80_RS02520  610273 ..  610286 -  -5.2  -4.16681   AAGACCAGTGCAAAA               CGCC CGTCGT GGCG                ATCGTTGCTGGGGCG  66 181
JTM80_RS02495  603688 ..  603712 -  -3.5  -3.31322   CGCAACTTTTCAGAA          GACTCGCCAAA AGC TTTGTCTAGCC          CACGGCCGTCAGTGC  48 20
JTM80_RS02490  602241 ..  602251 -  -6.8  -2.52896   CGATTCGCGAAGCGA                 TCCC TGC GGGA                 ATCGCCCTCCGCAGC  50 327
JTM80_RS02480  598478 ..  598497 -  -7.2  -4.06179   GCTAAAAGCGAGAAA            CTG-CGTAG ATC CTACGACAG            GTCGCACGAAAGGCT  71 45
JTM80_RS02475 NONE
        crtC  596392 ..  596416 - -10.7  -3.60098   AGCCCTCACCCTAAA          TCCCTCTCTCA CAG CGGGAGAGGGA          CTTCAACCCCGTATC  77 189
JTM80_RS02465  595749 ..  595764 - -10.4  -5.77853   AAGTGCCAAAAAAAA              GCACCC CGGA GGGTGC               CTCGGTTTCGCCACA 100 80
JTM80_RS02440  588720 ..  588734 -  -2.8  -2.62396   TAGGCCTCTAGACGA               TGGG GGCTTGT CCCA               GACCTAAACTAGACT  40 342
JTM80_RS02435  588597 ..  588624 - -14.2    -4.208   TCTCAAAATCACAAA        GCCCCTCTGAAG TGAA CCTCAGAGGAGC         TTTAACTCGTTTACG 100 53
JTM80_RS02430  587206 ..  587216 -  -3.2  -2.71924   CAGTCTGCTCCAAAT                 CCTA GCT CAGG                 TTCGCAAAACAATAC  41 81
JTM80_RS02425  585844 ..  585872 -  -4.4  -4.25256   CCCTTAGCAAAAGAA        GCGAAACTGGCG GCGAT CGCCTGATTAGC        CCTTGTGACGGCTCC  63 127
JTM80_RS02410 NONE
JTM80_RS02405  581479 ..  581503 - -16.5  -3.60098   AGCCCTCACCCTAAA          TCCCTCTCCCA GAG CGGGAGAGGGA          CTTCAAGCCTATGTC 100 148
JTM80_RS02395  576653 ..  576664 -  -7.2  -3.17529   CGACAGAGGAAGAGA                GGGC GATC GCCC                 GCGCCCAGCAACTCG  56 506
JTM80_RS02370  571292 ..  571303 -  -7.2  -3.71527   GCCGAAGCATTGAAA                GGGC GATC GCCC                 TCTTTCAACTCGGCG  67 57
JTM80_RS02365  570596 ..  570650 -  -9.2  -4.32177   CTATTTCACAACAAA GCGCCCGTACAGCAACCAGAAGAG AAAGAAA CACTCCCAGTAGATGCACGAGCGC CGAGTCAGCCAGAGC  83 72
JTM80_RS02360  570043 ..  570075 -  -4.8  -2.57468   GCGCAGCAGATCAAT      CAGCCCGTCTAGCT GCTAA ATCTAGACTGGGTG      CTTAAAGCCGTAGGT  44 14
        rpiA  568859 ..  568869 -  -4.6  -3.98214   ATGACCGATTAGAAA                 CCGC CGT GCGA                 AACCGTTTGAGGGAG  62 375
JTM80_RS02345  565925 ..  565935 -  -6.8  -4.72272   TTTGGGTATTAAAAA                 CAGG ACA CCTG                 ATCAATACCTACGGG  84 506
JTM80_RS02335  564396 ..  564407 -  -7.2  -2.85402   GAAAGCAGGACTAGA                GGGC GATC GCCC                 GTCTAGGCAGCCGAC  56 28
JTM80_RS02330  563112 ..  563142 - -15.5  -4.71828   ATCTGATGAACAAAA       GAGGGATGGAGCC ATGCA GGTTCCATCCCTC       TCGCATTAACTCGCA 100 60
JTM80_RS02315 NONE
JTM80_RS02310 NONE
JTM80_RS02305  555830 ..  555844 -  -4.2  -4.11216   TCCCGAGCTGCAAAA               CCGACA CAC CATCGG               CTTTTTTCCGGGTTC  62 492
JTM80_RS02290  552585 ..  552600 -  -6.1  -3.62032   AGAGCAATGGCTAAA              CCGCA GCGCTT TGCGG               CGTACTTTAATGCTA  59 56
JTM80_RS02280  547942 ..  547953 -  -4.4  -2.78798   ATCGGTCATTTAAAC                TGGA CAAT TCCA                 CCTTCAGCCAATCTG  44 394
JTM80_RS02270  537766 ..  537796 - -11.2  -5.26875   GCGTGAATCAAAAAA       GGTGTGCCGCTC TGAAAGC GAACAGCACACC       CCACGATTTACAGAA 100 70
JTM80_RS02260 NONE
JTM80_RS02255  535193 ..  535205 -  -2.6  -3.95787   TATCAGAGCCAGAAA                GCGC TAGAG ACGC                ACCTGCACTCACACA  53 241
JTM80_RS02250  534302 ..  534312 -  -6.8  -3.64236   ACCGAAACCCTGAAA                 CTGC TGG GCAG                 CTACTCCATTGCTAA  63 222
JTM80_RS02240  532419 ..  532442 -  -4.4  -3.06696   CTGTTTGGGAACAGA          GCGCCCAAAC TGGG GACTGGGCGT           AGTCGCTAGCTTAGT  48 36
JTM80_RS02215  524123 ..  524138 -  -2.5  -4.33153   TCGAACATGAAGAAA              TCCGC CTTTAT GCAGA               AGTGATCCAGCTTTC  62 408
        clpS NONE
JTM80_RS02200  522316 ..  522334 -  -2.3  -2.83403   TGCGCTTCAGGAAAT             GGCGACA GCGGT TGACACC             CTGGCGATGGCCGAG  39 208
JTM80_RS02190  520307 ..  520321 -  -3.4  -2.93382   GGTCACAGCGATAGA               GCCACC CGC GAGGGC               CGACAAGAAAGGCTA  42 212
JTM80_RS02185  518999 ..  519011 -  -4.8  -3.25942   ATGTCCTGACAGGAA                CAGC TTCAG GCTG                AACAGGCTGAGCAAT  50 460
        rpoB  515302 ..  515315 -  -5.2   -2.7814   AGGCAGATTGGAAAT               CGGC TAACCT GCCG                GGGGTGAAGCCGCGA  48 125
JTM80_RS02175  513228 ..  513242 -  -7.1  -3.75105   CGAATGGATCAAGAA               GCCCT GTTTT AGGGC               GATCGCCCTTCACTG  64 135
JTM80_RS02170  508976 ..  509004 - -11.8  -4.77157   GGAATTTAGCAAAAA        GAGGGAGATGAA GGCAA TCCATCTCCCCC        CTTTTGAATTTGTTG 100 136
JTM80_RS02150 NONE
JTM80_RS02110  496418 ..  496430 -  -9.1  -2.60392   TACCTGCCAACCAAG                CGCTC GTG GAGCG                GCTGCGGGCGGCAGG  57 352
JTM80_RS02095  493694 ..  493705 -  -4.4   -3.1739   CAGATCAACTCAACA                GATC GAAA GATC                 AAAATCTACGGAATC  48 117
        argJ NONE
JTM80_RS02085 NONE
JTM80_RS02080 NONE
JTM80_RS02075  489016 ..  489034 -   -11  -4.18018   GGCTGCGATTCAAAA             GGTGACGC AGG GCATCACC             ACGGTCGAAGAGGTG  88 164
JTM80_RS02065  485990 ..  486025 - -19.2   -3.0264   AAACCGTTGTCAATA    CAAGGCCCCACGCTTCT GTC AGAAACG-GGGGCCTTG    AGGGTGTCAGAGAAT 100 56
JTM80_RS02060  484049 ..  484061 -  -3.3  -4.43213   TGCAACATACCAAAA                TTGGC AAA GCCAT                GCGGGCCGTTGCTGA  66 464
        proB  477107 ..  477154 - -11.2  -4.87328   TAGATAAATATAAAA CCCAAAGACCCTGCGCTGCTCGC TGC ACGGGCGGCGCAGGGT-TCAGGA TCTGTTTTTTAATCT 100 140
JTM80_RS02025  474941 ..  474959 -  -3.8  -4.64763   TGAGGCAAAAAATAA             GGGCAA GGGGCGA TCGCCC             AACTCACCCTCCAGC  68 111
        csaB NONE
        larB NONE
JTM80_RS01995  469298 ..  469312 -  -9.2  -3.36878   CGCACCCATCTAGAA               GCCCGC ATC GCGGAC               CTGGTGCAGTTTTAT  67 393
JTM80_RS01985  463598 ..  463622 - -12.9  -3.60098   AGCCCTCACCCTAAA          TCCCTCTCCCA GAG CGGAAGAGGGA          CTTCAAGCCTGTATC  83 265
        psbH  463093 ..  463111 -    -8  -5.90231   ATAAACATAAAAAAA             GCCCTGGC ATG ACCGGGGC             TTTCTCATAATCGAG 100 54
JTM80_RS01955  458899 ..  458917 -  -6.7  -4.01078   AAAACTCACCAGAAA             CCTGAGA GCCTG CCTCAGG             ATGCTCGGCGGTTGG  69 21
JTM80_RS01950 NONE
JTM80_RS01945  457361 ..  457384 -  -8.8  -3.09327   TGATCCGAGCCAACA          GCCTTGGGGG ATAT CCCCCAAACC           CCCTTTTGCAGGGGA  65 171
JTM80_RS01940  456146 ..  456158 -  -2.7  -3.03619   AAGGATTTGGGAATA                CAAGT AGG ACTTA                CGCACTTGCGACTCA  44 203
        dprA NONE
JTM80_RS01930 NONE
JTM80_RS01925  451706 ..  451732 -   -21  -3.31461   TACGCAGTTGGAGAA         TTTCTCGCGGGC GCA GCCCGCGAGAAA         TTCTCCAAAACCCAA 100 106
JTM80_RS01920  450069 ..  450113 - -24.5  -2.88758   ACAAGGGCTTACACA GTTGGGCAATTTCTCGTGGGC GCA GCCCGCGAGAAATTGCCCAAA ATCCAGCTAGCTTAT 100 147
JTM80_RS01910  447720 ..  447770 - -11.1  -4.52857   ACTGTCCACACAAAA GCGAAGAGCCAATGCGCTGCAGC GACCA ACTTCTCCGCACTGGCTCTTGGC TCCAATCTGCAATGG  95 334
JTM80_RS01900  447281 ..  447303 -  -5.5  -3.29144   GTAGGCCCGGCAGAA           CTCGTGGAG GCGAT CGCCACGAA           AATCCCCAATCCCCA  51 110
JTM80_RS01875  439245 ..  439261 -  -2.9  -2.88023   CCATCACGACGAAAT              CGAAGTC GTC AACGTCG              CTTTTTTCACCCCCG  42 162
JTM80_RS01865  437347 ..  437361 -  -5.7  -3.35867   GCAAGGTGGAACGAA               CCGAT TGACT ATCGG               GTCGGCGGATCTTCG  57 19
        bchI NONE
        ruvC  435300 ..  435312 -  -3.3  -4.07306   ACAGTGAAGGAGAAA                TCCTG ATC CAGGT                GCAGGACGAAAGTTC  58 213
JTM80_RS01840  433185 ..  433211 - -10.8  -2.52543   AGCGTTCCCAATTGA         CGGGTTAACCTG GAA CGGGTTAGCCCG         TTTTTTTGTCTTTGC  67 287
JTM80_RS01820  429379 ..  429390 -  -3.6  -3.18452   ACTACGGGAAGTCAA                CGCC CCAC GGCA                 CGGAGATTTTCAACG  47 379
        mrdA  425205 ..  425216 -  -3.6  -4.55826   TTGAAAACATCAAAA                CGCC AACC AGCG                 ATGTGGACGTGTCCA  68 110
JTM80_RS01780  420748 ..  420762 -    -5  -2.60075   GCCTCGTTAATCAAG               GATTTC CGA GAAACC               GCTTTTCCTGGGCAA  47 6
JTM80_RS01775  420230 ..  420250 -    -4  -4.57837   ATACCGCCCGAAAAA           CCGCTGA-CG GCG CGATC-GCGG           GCATCTTACAAATTC  66 31
JTM80_RS01770  419365 ..  419378 -  -2.3  -4.56133   TCCGAAGAATCAAAA               GCTGC TATT GCAGG                CGCTCCTCGTGCTAC  64 375
JTM80_RS01760 NONE
JTM80_RS01755  417759 ..  417773 -  -5.7  -2.71712   CGGTTTCTCGGAAAT               CCTTG ATTAA CAAGG               CTTTCAGGCTCCTTT  51 39
JTM80_RS01750  414967 ..  414982 -  -3.9  -3.59979   GCGGCGCAGGGCAAA              CCCCA GTTTTT CGGGG               CCATATTCTCAGCCA  52 34
JTM80_RS01745  413851 ..  413873 -    -4  -3.26471   CTACGGCGACATGAA           CGGCGGCC TGGGGGC GATCGCCG           ATGTACCCAAAACCC  47 498
        ruvA  405030 ..  405046 -  -8.1  -3.21099   TCCGGTGAGTATCAA              TACAATC AAC GATTGTA              TCACAGGGCTTAGGG  64 43
        rpsO NONE
JTM80_RS01705  404020 ..  404038 -  -7.4  -5.28983   CCCAAAAGACAAAAA             CCACCC TCCGGTC GGGTGG             TTTCTGCGATGAGGC 100 43
        aroF NONE
JTM80_RS01695  400087 ..  400106 -  -2.8  -4.18197   ACGGGCGATCCAAAA            TCGCGAGT CCAA AATCGCAA             GTCCAAAATCGCAAA  59 61
JTM80_RS01675  396339 ..  396367 -  -9.5  -3.01712   TTTGGGTTTTGAACA        CCTTCTCGCAGGC TAC GCCCGCGAGAATT        TATCAAACTTAAGTC  67 49
JTM80_RS01670  395477 ..  395515 - -10.9  -4.56702   GCTGAATCAAACAAA   CCGCCGAGACGAAGCAC GGGTT GTGCAACCTCTCAGCGG   TTCGCATGGGTTCAG  91 294
JTM80_RS01665  394537 ..  394551 -  -5.7  -4.56597   GGCTGGCTGGAAAAA               GTCGA GGCGA TCGAC               AATATCTTCCCCAAT  75 403
JTM80_RS01655  389106 ..  389129 -  -6.6  -2.54314   GAGACAGAACAAAGC          GCGATCGCCC TATG GGGCAACCGT           TTCGCCCAGCATTGG  52 140
JTM80_RS01650 NONE
        smpB NONE
        mutL  386129 ..  386139 -  -3.2  -3.41229   ACACTGGCACCAGAA                 CAAG CGC CTCG                 GCCGACCCCGCAAGA  47 144
JTM80_RS01620 NONE
JTM80_RS01615 NONE
JTM80_RS01610  377367 ..  377390 -  -2.3  -4.30231   AACAACGAAGACAAA          GCCGCCAAG CTCCAC CTCGACCGC           TGCACCCACTGGCTC  62 194
JTM80_RS01595  371826 ..  371854 -  -9.6   -4.8622   TTCCGCAATGAAAAA       GCCCCACTTCACC GATT GG-GAAGTGGGGG        CAGACCTTTCTGCTT 100 125
JTM80_RS01590  370982 ..  371011 - -12.9  -3.05844   CGGTTCATCGTAAGA       GGCGATCGCCC AGCGCAAG AGGCGATCGCC        CTTTTTTATCGCTCT  79 39
        psbZ NONE
JTM80_RS01560  363270 ..  363287 -  -4.1   -3.4331   ATGTCCAGGAAAAAG             TCTCCCA GCGT TGGGACA              TTACACTGGAGCCAG  49 97
        nadD  358638 ..  358659 -  -9.3  -3.25234   TCAAGAAATGGAAGA           CGGAAGGGC GATC GCCCCACCG            CTTATCCGTATGCAA  67 93
JTM80_RS01535 NONE
JTM80_RS01530 NONE
JTM80_RS01525 NONE
JTM80_RS01520  354181 ..  354194 -  -2.3  -3.73953   ATCAGCTCGAGTAAA               TCAGC TTGA GCAGA                TCAGCTTGAGCAGAT  50 137
JTM80_RS01515 NONE
        blsG  351477 ..  351494 -  -2.7  -2.99649   ACAGCTCGATACAGA             CCG-ATCG ATT CGATGCAG             TTTCGATGCAGTAAA  42 90
JTM80_RS01505 NONE
JTM80_RS01500 NONE
JTM80_RS01495  348117 ..  348143 - -15.2  -3.28712   CTGGGTTTTGGACAA         TTTCTCGTGGGC TGC GCCCGCGAGAAA         TCGTCCAACCGCGTA  90 125
JTM80_RS01440  337001 ..  337012 -  -3.6   -2.6155   GGGTTCAACATCAAC                GCCG AACG CGAC                 ACCACTTTTAATTTT  42 235
JTM80_RS01420  332888 ..  332946 -  -8.9  -3.06815   ACGGCCCGGAATAGA GT-TCGCGTGTACTGGAAGCCGCTAGAAC CTT GTGCT-GCGGCTTCCAGAAAACGAGTCAC CCATCGCGATCAAAA  65 258
JTM80_RS01415  330876 ..  330900 - -15.8  -3.60475   AACCCTCACCCTAAA          TCCCTCTCCC GCTTT GGGAGAGGGA          CTGCCAATCCGGCTC 100 344
        mgtA  325759 ..  325815 - -18.8  -5.23316   GACCAGATTAAAAAA CAGATCCC-GA-ACCCTGCGCCGCCCGC GCA GCGGGCGGCGCAGGGTCTTTGGGTTTTA TATTTATTAATGTCC 100 408
JTM80_RS01375  320352 ..  320366 -  -4.9  -3.66844   TTGACACTCTAACAA               GCCAG ACTAA CCGGC               TCAGAGGCGATCTGG  56 91
JTM80_RS01340  312265 ..  312275 -  -2.4  -3.53091   ATGGCGCTGGCCAAA                 GCGC TGG GCGA                 TCGCAAAGGGATTCA  47 340
JTM80_RS01325  310656 ..  310684 -  -9.5  -2.73903   AAAATTTTTGGAAAG        GCGGTACTGGCCT GCA AATCCAGTGCCGC        TTTTTAGTTGGAGGC  65 143
JTM80_RS01300 NONE
JTM80_RS01295  305051 ..  305062 -  -2.2  -4.64598   GAATCAGTCCAAAAA                GTCGC ATG GCG-C                AGTGCAGGTGTGTGA  65 250
JTM80_RS01290  304225 ..  304239 -  -6.4  -3.06261   GTGGAACGGGCAATA               CTATCG GCT CGACAG               CGGCAGCGGTTCGGA  52 469
JTM80_RS01275 NONE
JTM80_RS01270  299936 ..  299946 -    -4  -3.53091   AGCGCGGCTGCGAAA                 GATA AGA TATC                 CCCGTAGGTGAGGAA  52 400
JTM80_RS01260  296431 ..  296450 -    -5  -3.65046   TGTGGAGCGCAACAA            CATTTACC GATG GGTCAATG             AGAAGCGCGATCCAA  56 138
JTM80_RS01250 NONE
JTM80_RS01245 NONE
        dndE  295106 ..  295122 -  -2.1  -2.56596   TCGCCCATCAACTGA              GTGCGAT CGT AACGCGC              AACCCTCAGGACTTT  39 63
JTM80_RS01230  293371 ..  293388 -  -3.3  -2.61728   AGCGCGAACAGCAAT             CCTACGC CGCC ACGGAGG              GAGTTTCCGGAGAGG  40 9
JTM80_RS01225  292651 ..  292667 -  -6.5  -4.61231   CGACACGCTCAAAAA              GCAGATG GCC CAACTGC              TTACGTTTATCAAGC  78 373
        lipA  290246 ..  290280 -  -7.2  -3.67843   CAAAAGGGCGAAGAA    GTCTTG-GCACGGGAG GCGCT CACCCG-GCGCAAGAC    CTATCAAGACACCGC  63 522
JTM80_RS01205 NONE
        htpG  286756 ..  286791 -  -6.9  -4.25848   AACTCGCTATGAAAA    GGGGGACTCTTCTTGA CTCTT TCTAGAAGC-TCCCCC    TTTTTTGCTTGTGCA  71 64
JTM80_RS01175  280005 ..  280046 - -10.7  -3.46602   CTCTTCACAGCAGAA CGTCCCCCGGAGTTGCAGG ATAG CCCGCCGCTTCAGGAGACG  CTAGTTTCGTATGAG  75 86
JTM80_RS01160  276410 ..  276425 -  -4.6  -3.19449   CAAATACTGCACGAA              TCCTGC CCTG GCTGGA               TTGGAAGCGAGAGGT  50 55
JTM80_RS01155 NONE
JTM80_RS01150  274613 ..  274627 -  -7.2  -3.53091   ATCTGTTTGCTTAAA               GAAATG TGT CATTTC               TGAAAATTCCTAACC  64 160
JTM80_RS01145  273652 ..  273678 -  -9.5  -5.66229   AGTAAGAACAAAAAA         GAAGCATGGCA TCTTG TTCCATGCTTC         TCAAATTGTTTCTCA 100 237
JTM80_RS01130  270754 ..  270772 - -13.2  -2.73635   GAAACCGCCTTAAAG             TCCCCCTT TTT AAGGGGGA             TTTAGGGGGATCTTG  79 409
JTM80_RS01125  267104 ..  267138 - -14.5  -4.89521   ATATTCCAAACAAAA     TGAATCGTTGTGCAG ATTCA CCACACAACGATTCA     TCTGGAATGGAACTT 100 84
JTM80_RS01115  264034 ..  264064 - -14.2  -2.81181   AGAAGACGAAGATTA       GTCGTTGATTAATC AAC GATTAATCAACGCC       CCTAGTGGCAATTCT  82 118
JTM80_RS01095  261411 ..  261426 - -10.4  -4.24204   CATCCATAGTCAAAA              CCTGGC ATCT GCCAGG               ACGCAGATCAACGCT  88 465
JTM80_RS01090  260125 ..  260148 -  -7.4  -2.56722   AAAGATACCAGGAAG          GGCAGGCTTTG CAA CATAGCC-GCC          TGCTGTGACGGATTG  55 90
JTM80_RS01085  258667 ..  258685 -  -4.6  -2.90496   TCGCCTTCTAAATCA             GATATCTA AAT CAGATACC             AGGGACATCAGGCGC  47 46
JTM80_RS01080  257148 ..  257161 -  -6.7  -4.62069   GTTCTACGTGAAAAA               GATCG CAAA CGATC                GGGTAAAGTTCACGC  79 263
JTM80_RS01055  251807 ..  251852 -  -6.1  -4.88918   CTAGCTTAAATAAAA GCATCGAGCAGATTTGGCTAT GTCT ATGACGATTTCTGCCCGATGC TCTGAATTTTTGTGG  78 55
JTM80_RS01050  250724 ..  250742 -  -3.1  -3.08695   TTCAGACAAACCACA            GGCGGCCA TGTT TAGCC-CC             AAACTCCACCACCGC  44 70
JTM80_RS01045  249070 ..  249085 -  -2.4  -4.42081   AATACAAAGCCAAAA              GACAGC AAGA GCCGAC               CGAAGCGGAAGCGTA  60 407
JTM80_RS01025  245653 ..  245677 -  -2.1  -5.07971   CAAAACAAGGAAAAA         GCCCTGGCCC GTCTGA AGGCCAA-GC          TGCTGGTGATTGCCA  77 298
JTM80_RS00995  237743 ..  237772 -    -7  -3.05463   ATGGCTCTCAGCGAA       GCCCACGCAGGC AGCGAA GCCTGCGGAGGT        ATGAATGGGAGTCTG  56 493
        purH  234826 ..  234844 -    -6  -3.64236   ACGGAAATCGGGAAA             TTGCTGGA AAG TCGAGCAA             TGGGCTGCTAATTGT  59 94
JTM80_RS00975  234282 ..  234315 - -10.3  -5.03715   ATCACCTCCAAAAAA     CAAGCCTCCCAGCGA GAAC TTGCTTGGAGACTTG      TTTGCGGATGAAGGA 100 84
JTM80_RS00970  233577 ..  233617 -  -6.9  -3.40403   CGTTTTTCATCATAA CTTGAGTTGGCG-ATCGC CCCAGC GCAACACGCCAACCCCAG  CAACCCTTAGTCCTC  60 39
       psb27  232932 ..  232953 -  -7.2  -4.51812   CGCGAGAATAAGAAA           GGGAGGGC TGGTTC GCTCTCCC            TTCTACGAATCCCAA  79 168
JTM80_RS00950  229358 ..  229382 - -12.9  -4.35483   TTTCACTAGAATAAA          TGCGCCCGGAA ATC TTCCAAGCGCA          TTTGCAACCGTATTC 100 88
JTM80_RS00945 NONE
JTM80_RS00940  227339 ..  227349 -  -2.4  -3.18383   AGCCCCAGCCACCAA                 CCGC TAT GCGC                 CTACTCTCTCCGGAA  44 18
JTM80_RS00935  226679 ..  226695 -  -2.9  -5.10497   AACTTAGTGAAAAAA              TATACGC TTT GCGCGTA              GTTTTACGGAAATCC  76 235
JTM80_RS00930 NONE
        hpsL  223958 ..  223979 -    -6  -3.41587   TCTGATAAAACGCAA           TTCTGTAT TTTTAG ATACAGAA            TTTATTGCTATGATT  57 519
JTM80_RS00910 NONE
JTM80_RS00905  220526 ..  220536 -  -2.4  -3.91716   GTACCCGGCAAACAA                 GCGG TAG CCGA                 GGCGATTCGCGAGTT  53 130
JTM80_RS00895  218258 ..  218288 -    -4  -4.38748   GCCATAAAGAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  64 53
JTM80_RS00845 NONE
JTM80_RS00840 NONE
JTM80_RS00835 NONE
JTM80_RS00830 NONE
JTM80_RS00825  198796 ..  198836 -  -7.7  -5.00339   AGGAAGAATGAAAAA  CGAAGAACGAAAAACGAAA ATT TTTCCCTCTTCTCTCTTCG  TTCTTCTCTCTTCCC  87 49
JTM80_RS00815  195836 ..  195848 -  -9.1  -3.29263   AGAGTTTCGCGACAA                GGTGG GAA CCACC                AAGACCGACTGGCGC  63 507
JTM80_RS00725 NONE
JTM80_RS00720  179513 ..  179527 -  -2.8  -2.65354   TTGAGTTCAAAGCTA               CAGGAA CAG TTCCCA               CGATTCTCGAATGTG  40 8
JTM80_RS00715  178118 ..  178128 -  -5.4  -3.90112   CTTGGCTGAAGCAAA                 TGAC CGA GTCA                 GACGTAACCCAGCGA  61 150
JTM80_RS00705  175926 ..  175972 -  -7.9  -3.73914   ATTAGCGACGAACAA CTGGCGCTGGCGCGAACCAAC TGGGC GACAGTTCACCCCAGCGGCAA ACGAGGGCTATGGTA  67 468
JTM80_RS00690  171294 ..  171348 -  -4.5  -3.97645   ACGAAGAGAGAAGAA CGAAGAGAGAAGAACGAAGA-GGAAA GGGT TTTCGGTTTTCGTTCTTCCTTTTTCG TTCTTCTTTTTTTAT  61 43
JTM80_RS00655 NONE
JTM80_RS00650  160222 ..  160233 -  -5.8  -3.39061   CGTCAACAAAAACCA                GGAC TATT GTCC                 GACTGCGTAAGTCCA  57 279
JTM80_RS00635  157199 ..  157209 -  -2.6  -3.86346   GCATCTCTGCATAAA                 TAAA AGC TTTA                 AAAGTTCGAGATTCG  53 132
JTM80_RS00630  155574 ..  155593 -  -5.6  -4.13945   AGCTTCATTGTAAAA            CGAATCGG CAAC CCGAACCG             GCCAACACAAACCAG  66 126
JTM80_RS00625  154523 ..  154537 -  -2.1  -3.61536   AAGCCAACGTCGAAA               TCTAC ACCTG GCAGA               CCTGCCCCTACTGTA  47 304
JTM80_RS00610 NONE
JTM80_RS00605  151598 ..  151618 -  -3.2  -2.95515   ACCCAAAAGCGAAAC           GCCTCGAGC TGCG GC-CGATGC            TCTGACTTCCGGCAT  42 151
JTM80_RS00595 NONE
JTM80_RS00590  147619 ..  147637 - -13.2  -3.55548   CAAGATCCCCCTAAA             TCCCCCTT AAA AAGGGGGA             CTTTAAGGCGGTTTC  86 169
JTM80_RS00565  142496 ..  142509 -  -8.1  -3.67976   CGGAGGAAGTCCAAA               TGGGC GATC GCCCA                TTACGCCAACCCCAC  70 48
JTM80_RS00560 NONE
JTM80_RS00555  140887 ..  140905 -  -5.3  -3.38522   CAGCCAGTGTAAACA            GTC-AGCC AGGC GGCTAGAC             CTGAACCGAAACCCC  54 20
JTM80_RS00530  136177 ..  136209 -  -9.9  -5.07567   CCATACTGCAAAAAA      TCTCTGCTTGATTCA ATT CGATTCAGGCAGAGA      TTTTAAGTTTTGATG 100 400
JTM80_RS00520  132683 ..  132693 -  -5.4  -3.99013   TAAAAACCTGATAAA                 GAGT TTC ACTC                 TTCAAGTTTCCAAAG  63 20
JTM80_RS00515  127924 ..  127959 - -11.2   -4.4078   TCCTTTCAAGCAAAA    TCCCCTGCTTC-TGGCA CCG TTCCAAGAGGCAGGGGA    TTTTTAGGTTACGCC  91 121
JTM80_RS00505 NONE
        msrP  123973 ..  123993 -    -4  -4.60041   AGCCAGTCGCAAAAA            CTGCTG GAAACGAAT CAGCAG            CTCGAAGCCCGGATT  70 144
JTM80_RS00475  116485 ..  116511 - -15.2  -3.61398   CTGGGTTTTGAATAA         TTTCTCGCGGGC TGC GTCCGCGAGAAA         TTATTTAAATGCGTA  91 159
        apcB  113439 ..  113465 - -10.8  -4.81734   AAACAGCAGCAAAAA         GCGGGATGAAGC AAC GCCTTACCCCGC         TCAATGGTCAATAAC 100 183
JTM80_RS00450  108516 ..  108531 -  -2.5  -3.30124   CGGCAGCGCTCAGAA              CTGCC GGACGG AGCAG               GTGACGGCGATCAAC  44 208
JTM80_RS00400   97615 ..   97629 -  -3.4  -3.24232   CGTTCTGTAAAGATA               CTAGCG TTT CGCCTG               GGCGGATGGGGGCAG  46 85
JTM80_RS00395   96444 ..   96460 -  -4.4  -2.91873   AGGAGTCCGAAATGA             TGCC-CC GCAC GGCGGCA              CTGGCGGTGATGGAG  46 256
JTM80_RS00380   92600 ..   92617 -  -6.9  -3.57144   TGTTCTATCCCGAAA             CGCTGCG CTTT CGCAGGG              GGCAGGTAGAAATCG  60 341
JTM80_RS00370   86798 ..   86808 -  -4.6  -3.94003   ATGAGAAACGAAGAA                 GACG AGC CGCC                 AATGGTGTTTGTAGA  59 449
JTM80_RS00360   83962 ..   83978 -  -3.5  -3.53012   TGCGGTCTTGGCAAA              CGTGCTG CAT CCGCCCG              CTGTGTTTGTGTTTC  49 76
JTM80_RS00350   82219 ..   82231 -  -5.5  -3.63515   GGTGACCCGCAAGAA                CGACC TAG AGTCG                CGCCTCAGCAAGCTG  55 247
        cobU   80508 ..   80520 -  -6.2  -2.52933   CCTTAATGCACTAAT                GGCC TTAAT GGCC                TGACCTTAGTTGCCT  49 145
JTM80_RS00330 NONE
JTM80_RS00315   75933 ..   75947 -  -2.1  -4.27584   ATCGCCAATCTAAAA               TCCAA AATCG CTGGA               ATTGTCAAACTAAAA  57 50
JTM80_RS00310   74771 ..   74789 -  -2.2    -2.981   TGGGAATCCAGAAAG             TTGGCGCG CTC CGCACCCG             TTTCGTAACTTACTC  41 73
JTM80_RS00305   74041 ..   74052 -  -5.8  -3.02144   CGAGTTGCCGGAACA                GCAG CTTG CTGC                 CCAAGGGATCTAGCG  52 66
JTM80_RS00295   70542 ..   70552 -  -4.6  -3.15861   CAGCAGCTTTACCAA                 GCAC TCC GCGC                 CAATGGCAACACCGC  47 397
JTM80_RS00280 NONE
         gmk   66059 ..   66069 -  -4.6  -3.95435   TCCTGTAAAACACAA                 CCAC AGC GCGG                 GCAAAGATGCCTCAT  62 120
JTM80_RS00260 NONE
JTM80_RS00255   60168 ..   60189 -  -2.3  -4.11216   CGGGCACTGGTAAAA           CATTGCCTAG ACT CTA-GCGATG           GAAGCTGTAGGGCAA  55 159
JTM80_RS00250   59136 ..   59150 -  -2.1  -4.52949   CTTGCAAAAAAAAGA              CG-GTC AGTG GACTCG               CGCCAAAGGCTTTGA  64 441
JTM80_RS00240   58059 ..   58087 - -10.4  -3.32769   GCGTTAAAGCATCAA        TCCCTGCAAAGT GGCGA ACTTCACAGGGA        TCATCTACAGCCAAA  73 71
JTM80_RS00230   54342 ..   54355 -  -2.4  -2.69471   GGATGGTTAGAGAAT               GAGT CATATC ACTC                CGACTGGCGGTTCGG  39 149
JTM80_RS00225 NONE
JTM80_RS00220   53070 ..   53082 -  -3.4  -3.21934   TCTGCGTCAGAAAAC                TGTC CTGAC GACA                CTTAGTATAGGCATT  46 77
JTM80_RS00215   51790 ..   51842 - -20.7  -3.27771   CTTACAACATTAAGA GCCCCCTCTAGCATAAGGCTGCAAC CGA GTTACAGCCCTTTTCTAGAGGGGGA AAAGCAGTTCGTTAG 100 98
JTM80_RS00210   51331 ..   51346 -  -2.5  -4.74504   ACGCCAATCCAAAAA              CGCCA CAGGAC TGACG               CACTTGCGATAAGTT  65 133
        hpxZ NONE
         zds NONE
JTM80_RS00195 NONE
JTM80_RS00190 NONE
JTM80_RS00185   46529 ..   46539 -  -5.4   -3.5362   CAAGCTTCAGAAACA                 GATG CTT CATC                 ATAGTGACTCCTGCG  56 157
JTM80_RS00180 NONE
JTM80_RS00175 NONE
JTM80_RS00170   44383 ..   44396 -  -4.5  -3.78934   GCTGCCTTAGAACAA               GC-CGG GCT CCGCGC               TGCCCTGATCGAAGC  56 161
JTM80_RS00145 NONE
JTM80_RS00140   38095 ..   38105 -  -3.2  -3.34398   CGCTGCGCCGAAATA                 CCTC GCT GAAG                 GATCTGGGCTGGGAC  47 226
JTM80_RS00120 NONE
JTM80_RS00115   31893 ..   31905 -  -3.4  -5.00196   GTGGAAATAACAAAA                TTGG TGGAG CCAA                GACAGGACTTATGCG  73 336
JTM80_RS00110   30955 ..   30975 -  -4.7  -2.78463   ACTTGGGTCATTAGA            CCTCCTG CATGAAT CAGGAAG            CGTGTGCCAGTTCGT  45 247
JTM80_RS00105   30080 ..   30093 -  -4.5  -3.55761   GATTCATCCGCGAAA               CGGTA CTTG CACCG                ATCAAATCTTCGCTG  54 385
JTM80_RS00085   21376 ..   21394 -    -6  -2.88544   GCGTATTTTGATATA             GTCTATTC AGT GAATTGAC             TTTACCCTTAACTCA  52 86
JTM80_RS00060 NONE
JTM80_RS00055   15104 ..   15122 - -10.2   -4.2717   ACTACGCTATCAAAA             GCCTCGCC GAG GCCGAGGC             ATACCTGCGACATCC  85 297
JTM80_RS00045   12862 ..   12883 -    -3   -3.8679   TAGAAAATAGCGAAA           CGGAG-AGC GCCCA GCTTCTCCA           CCCTGCGTCTCCCCA  54 241
JTM80_RS00035   11383 ..   11413 -    -4  -4.07877   GGATGCCATAAAGAA       TCTGCTCAACCGTT CAT AACAGTTGAACTTA       AGGAATTGGATACAA  59 53
JTM80_RS00020    4312 ..    4367 - -16.8  -5.23316   GACCAGATTAAAAAA CAGATCCTGA-ACCCTGCGCCGCCCGC TGT GCGGGCGGCGCAGGGTCTTTGGGTTTT ATATTTATTAATGTC   0 77
