locus-tag class description TRD_RS00010 PF09115 DNA polymerase III, delta subunit, C terminal TRD_RS00030 PF13291 ACT domain TRD_RS00030 PF00291 Pyridoxal-phosphate dependent enzyme TRD_RS00035 PF07689 KaiB domain TRD_RS00035 PF00512 His Kinase A (phospho-acceptor) domain TRD_RS00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS00045 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TRD_RS00050 PF01965 DJ-1/PfpI family TRD_RS00060 PF13732 Domain of unknown function (DUF4162) TRD_RS00060 PF00005 ABC transporter TRD_RS00065 PF00588 SpoU rRNA Methylase family TRD_RS00065 PF12105 SpoU, rRNA methylase, C-terminal TRD_RS00095 PF18019 HD domain TRD_RS00095 PF00271 Helicase conserved C-terminal domain TRD_RS00095 PF00270 DEAD/DEAH box helicase TRD_RS00105 PF01867 CRISPR associated protein Cas1 TRD_RS00110 PF09827 CRISPR associated protein Cas2 TRD_RS00115 PF02769 AIR synthase related protein, C-terminal domain TRD_RS00115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TRD_RS00115 PF00586 AIR synthase related protein, N-terminal domain TRD_RS00120 PF01174 SNO glutamine amidotransferase family TRD_RS00125 PF01680 SOR/SNZ family TRD_RS00130 PF00392 Bacterial regulatory proteins, gntR family TRD_RS00130 PF00155 Aminotransferase class I and II TRD_RS00155 PF00132 Bacterial transferase hexapeptide (six repeats) TRD_RS00155 PF12804 MobA-like NTP transferase domain TRD_RS00160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TRD_RS00160 PF14572 Phosphoribosyl synthetase-associated domain TRD_RS00170 PF02237 Biotin protein ligase C terminal domain TRD_RS00170 PF03099 Biotin/lipoate A/B protein ligase family TRD_RS00170 PF08279 HTH domain TRD_RS00175 PF00296 Luciferase-like monooxygenase TRD_RS00185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TRD_RS00185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TRD_RS00185 PF02770 Acyl-CoA dehydrogenase, middle domain TRD_RS00190 PF00132 Bacterial transferase hexapeptide (six repeats) TRD_RS00195 PF00378 Enoyl-CoA hydratase/isomerase TRD_RS00200 PF01012 Electron transfer flavoprotein domain TRD_RS00205 PF00766 Electron transfer flavoprotein FAD-binding domain TRD_RS00205 PF01012 Electron transfer flavoprotein domain TRD_RS00220 PF00583 Acetyltransferase (GNAT) family TRD_RS00255 PF02381 MraZ protein, putative antitoxin-like TRD_RS00260 PF01795 MraW methylase family TRD_RS00270 PF00905 Penicillin binding protein transpeptidase domain TRD_RS00270 PF03793 PASTA domain TRD_RS00270 PF03717 Penicillin-binding Protein dimerisation domain TRD_RS00275 PF02875 Mur ligase family, glutamate ligase domain TRD_RS00275 PF08245 Mur ligase middle domain TRD_RS00275 PF01225 Mur ligase family, catalytic domain TRD_RS00280 PF00953 Glycosyl transferase family 4 TRD_RS00285 PF08245 Mur ligase middle domain TRD_RS00285 PF02875 Mur ligase family, glutamate ligase domain TRD_RS00290 PF01098 Cell cycle protein TRD_RS00295 PF01225 Mur ligase family, catalytic domain TRD_RS00295 PF08245 Mur ligase middle domain TRD_RS00295 PF02875 Mur ligase family, glutamate ligase domain TRD_RS00300 PF01565 FAD binding domain TRD_RS00300 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TRD_RS00305 PF01820 D-ala D-ala ligase N-terminus TRD_RS00305 PF07478 D-ala D-ala ligase C-terminus TRD_RS00310 PF08478 POTRA domain, FtsQ-type TRD_RS00310 PF03799 Cell division protein FtsQ TRD_RS00315 PF00091 Tubulin/FtsZ family, GTPase domain TRD_RS00315 PF12327 FtsZ family, C-terminal domain TRD_RS00320 PF03477 ATP cone domain TRD_RS00330 PF00085 Thioredoxin TRD_RS00335 PF00294 pfkB family carbohydrate kinase TRD_RS00345 PF07969 Amidohydrolase family TRD_RS00350 PF01022 Bacterial regulatory protein, arsR family TRD_RS00370 PF13520 Amino acid permease TRD_RS00380 PF03741 Integral membrane protein TerC family TRD_RS00390 PF00128 Alpha amylase, catalytic domain TRD_RS00400 PF17191 RecG wedge domain TRD_RS00400 PF00271 Helicase conserved C-terminal domain TRD_RS00400 PF00270 DEAD/DEAH box helicase TRD_RS00410 PF00258 Flavodoxin TRD_RS00410 PF01613 Flavin reductase like domain TRD_RS00415 PF00534 Glycosyl transferases group 1 TRD_RS00415 PF13439 Glycosyltransferase Family 4 TRD_RS00420 PF13439 Glycosyltransferase Family 4 TRD_RS00420 PF00534 Glycosyl transferases group 1 TRD_RS00425 PF00830 Ribosomal L28 family TRD_RS00430 PF17827 PrmC N-terminal domain TRD_RS00430 PF05175 Methyltransferase small domain TRD_RS00435 PF00472 RF-1 domain TRD_RS00435 PF03462 PCRF domain TRD_RS00455 PF01842 ACT domain TRD_RS00455 PF00800 Prephenate dehydratase TRD_RS00455 PF01817 Chorismate mutase type II TRD_RS00465 PF01467 Cytidylyltransferase-like TRD_RS00480 PF00672 HAMP domain TRD_RS00480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRD_RS00480 PF17200 Single Cache domain 2 TRD_RS00490 PF04715 Anthranilate synthase component I, N terminal region TRD_RS00490 PF00425 chorismate binding enzyme TRD_RS00495 PF00117 Glutamine amidotransferase class-I TRD_RS00500 PF00591 Glycosyl transferase family, a/b domain TRD_RS00500 PF02885 Glycosyl transferase family, helical bundle domain TRD_RS00505 PF00218 Indole-3-glycerol phosphate synthase TRD_RS00510 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TRD_RS00515 PF00291 Pyridoxal-phosphate dependent enzyme TRD_RS00520 PF00290 Tryptophan synthase alpha chain TRD_RS00525 PF07736 Chorismate mutase type I TRD_RS00530 PF00793 DAHP synthetase I family TRD_RS00530 PF18152 DAHP synthase ferredoxin-like domain TRD_RS00535 PF01502 Phosphoribosyl-AMP cyclohydrolase TRD_RS00535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TRD_RS00540 PF01782 RimM N-terminal domain TRD_RS00540 PF05239 PRC-barrel domain TRD_RS00550 PF00886 Ribosomal protein S16 TRD_RS00555 PF01906 Putative heavy-metal-binding TRD_RS00560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TRD_RS00560 PF02770 Acyl-CoA dehydrogenase, middle domain TRD_RS00560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TRD_RS00565 PF00549 CoA-ligase TRD_RS00565 PF08442 ATP-grasp domain TRD_RS00575 PF13416 Bacterial extracellular solute-binding protein TRD_RS00580 PF01266 FAD dependent oxidoreductase TRD_RS00585 PF00355 Rieske [2Fe-2S] domain TRD_RS00585 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TRD_RS00590 PF01266 FAD dependent oxidoreductase TRD_RS00600 PF13556 PucR C-terminal helix-turn-helix domain TRD_RS00610 PF00589 Phage integrase family TRD_RS00610 PF14659 Phage integrase, N-terminal SAM-like domain TRD_RS00625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TRD_RS00625 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term TRD_RS00630 PF07005 Sugar-binding N-terminal domain TRD_RS00630 PF17042 Nucleotide-binding C-terminal domain TRD_RS00635 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain TRD_RS00635 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain TRD_RS00640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TRD_RS00640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TRD_RS00655 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS00660 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS00675 PF00149 Calcineurin-like phosphoesterase TRD_RS00680 PF00149 Calcineurin-like phosphoesterase TRD_RS00685 PF03099 Biotin/lipoate A/B protein ligase family TRD_RS00685 PF10437 Bacterial lipoate protein ligase C-terminus TRD_RS00690 PF01597 Glycine cleavage H-protein TRD_RS00695 PF01597 Glycine cleavage H-protein TRD_RS00710 PF02754 Cysteine-rich domain TRD_RS00710 PF13183 4Fe-4S dicluster domain TRD_RS00715 PF01012 Electron transfer flavoprotein domain TRD_RS00715 PF00766 Electron transfer flavoprotein FAD-binding domain TRD_RS00720 PF01012 Electron transfer flavoprotein domain TRD_RS00725 PF13183 4Fe-4S dicluster domain TRD_RS00725 PF02754 Cysteine-rich domain TRD_RS00725 PF02665 Nitrate reductase gamma subunit TRD_RS00740 PF01593 Flavin containing amine oxidoreductase TRD_RS00760 PF01597 Glycine cleavage H-protein TRD_RS00770 PF13686 DsrE/DsrF/DrsH-like family TRD_RS00775 PF01206 Sulfurtransferase TusA TRD_RS00790 PF02347 Glycine cleavage system P-protein TRD_RS00795 PF07136 Protein of unknown function (DUF1385) TRD_RS00800 PF00206 Lyase TRD_RS00800 PF14698 Argininosuccinate lyase C-terminal TRD_RS00805 PF13673 Acetyltransferase (GNAT) domain TRD_RS00810 PF04055 Radical SAM superfamily TRD_RS00810 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family TRD_RS00815 PF03099 Biotin/lipoate A/B protein ligase family TRD_RS00820 PF00271 Helicase conserved C-terminal domain TRD_RS00820 PF00270 DEAD/DEAH box helicase TRD_RS00820 PF08148 DSHCT (NUC185) domain TRD_RS00825 PF00534 Glycosyl transferases group 1 TRD_RS00830 PF00586 AIR synthase related protein, N-terminal domain TRD_RS00830 PF02769 AIR synthase related protein, C-terminal domain TRD_RS00835 PF01425 Amidase TRD_RS00840 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TRD_RS00845 PF00814 Glycoprotease family TRD_RS00855 PF00814 Glycoprotease family TRD_RS00860 PF00459 Inositol monophosphatase family TRD_RS00865 PF00850 Histone deacetylase domain TRD_RS00870 PF00117 Glutamine amidotransferase class-I TRD_RS00875 PF00977 Histidine biosynthesis protein TRD_RS00885 PF00977 Histidine biosynthesis protein TRD_RS00890 PF00877 NlpC/P60 family TRD_RS00900 PF00005 ABC transporter TRD_RS00905 PF00154 recA bacterial DNA recombination protein TRD_RS00910 PF06153 Cyclic-di-AMP receptor TRD_RS00915 PF00005 ABC transporter TRD_RS00940 PF00465 Iron-containing alcohol dehydrogenase TRD_RS00945 PF01048 Phosphorylase superfamily TRD_RS00950 PF11967 Recombination protein O N terminal TRD_RS00950 PF02565 Recombination protein O C terminal TRD_RS00955 PF01081 KDPG and KHG aldolase TRD_RS00960 PF01513 ATP-NAD kinase TRD_RS00970 PF06153 Cyclic-di-AMP receptor TRD_RS00975 PF02223 Thymidylate kinase TRD_RS00990 PF02132 RecR protein TRD_RS00990 PF13662 Toprim domain TRD_RS00995 PF01580 FtsK/SpoIIIE family TRD_RS00995 PF09397 Ftsk gamma domain TRD_RS00995 PF17854 FtsK alpha domain TRD_RS01000 PF03167 Uracil DNA glycosylase superfamily TRD_RS01010 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TRD_RS01010 PF12826 Helix-hairpin-helix motif TRD_RS01010 PF00533 BRCA1 C Terminus (BRCT) domain TRD_RS01010 PF01653 NAD-dependent DNA ligase adenylation domain TRD_RS01010 PF03120 NAD-dependent DNA ligase OB-fold domain TRD_RS01015 PF00156 Phosphoribosyl transferase domain TRD_RS01020 PF01699 Sodium/calcium exchanger protein TRD_RS01025 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TRD_RS01025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TRD_RS01025 PF02142 MGS-like domain TRD_RS01030 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TRD_RS01030 PF00117 Glutamine amidotransferase class-I TRD_RS01035 PF01979 Amidohydrolase family TRD_RS01040 PF02545 Maf-like protein TRD_RS01045 PF05958 tRNA (Uracil-5-)-methyltransferase TRD_RS01045 PF01938 TRAM domain TRD_RS01050 PF02675 S-adenosylmethionine decarboxylase TRD_RS01055 PF17284 Spermidine synthase tetramerisation domain TRD_RS01065 PF00529 HlyD membrane-fusion protein of T1SS TRD_RS01065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TRD_RS01075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS01080 PF00005 ABC transporter TRD_RS01080 PF12704 MacB-like periplasmic core domain TRD_RS01080 PF02687 FtsX-like permease family TRD_RS01085 PF04226 Transglycosylase associated protein TRD_RS01090 PF01746 tRNA (Guanine-1)-methyltransferase TRD_RS01095 PF00072 Response regulator receiver domain TRD_RS01100 PF16363 GDP-mannose 4,6 dehydratase TRD_RS01115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS01125 PF01264 Chorismate synthase TRD_RS01130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TRD_RS01135 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TRD_RS01140 PF05958 tRNA (Uracil-5-)-methyltransferase TRD_RS01140 PF01938 TRAM domain TRD_RS01145 PF01668 SmpB protein TRD_RS01155 PF01878 EVE domain TRD_RS01170 PF00248 Aldo/keto reductase family TRD_RS01185 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS01190 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS01200 PF09339 IclR helix-turn-helix domain TRD_RS01200 PF01614 Bacterial transcriptional regulator TRD_RS01225 PF02913 FAD linked oxidases, C-terminal domain TRD_RS01225 PF01565 FAD binding domain TRD_RS01235 PF02754 Cysteine-rich domain TRD_RS01235 PF13183 4Fe-4S dicluster domain TRD_RS01245 PF00326 Prolyl oligopeptidase family TRD_RS01245 PF07676 WD40-like Beta Propeller Repeat TRD_RS01260 PF12282 Signal transduction histidine kinase TRD_RS01260 PF07568 Histidine kinase TRD_RS01260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS01270 PF05343 M42 glutamyl aminopeptidase TRD_RS01280 PF00005 ABC transporter TRD_RS01320 PF07687 Peptidase dimerisation domain TRD_RS01320 PF01546 Peptidase family M20/M25/M40 TRD_RS01330 PF01556 DnaJ C terminal domain TRD_RS01330 PF00684 DnaJ central domain TRD_RS01330 PF00226 DnaJ domain TRD_RS01345 PF00378 Enoyl-CoA hydratase/isomerase TRD_RS01380 PF01434 Peptidase family M41 TRD_RS01380 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS01380 PF17862 AAA+ lid domain TRD_RS01385 PF00156 Phosphoribosyl transferase domain TRD_RS01420 PF01144 Coenzyme A transferase TRD_RS01425 PF01144 Coenzyme A transferase TRD_RS01430 PF13361 UvrD-like helicase C-terminal domain TRD_RS01430 PF00580 UvrD/REP helicase N-terminal domain TRD_RS01435 PF02896 PEP-utilising enzyme, TIM barrel domain TRD_RS01435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TRD_RS01435 PF00391 PEP-utilising enzyme, mobile domain TRD_RS01440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TRD_RS01445 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TRD_RS01445 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TRD_RS01450 PF01425 Amidase TRD_RS01475 PF04055 Radical SAM superfamily TRD_RS01480 PF01969 Protein of unknown function DUF111 TRD_RS01485 PF02535 ZIP Zinc transporter TRD_RS01490 PF00005 ABC transporter TRD_RS01495 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS01505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TRD_RS01530 PF13085 2Fe-2S iron-sulfur cluster binding domain TRD_RS01535 PF00890 FAD binding domain TRD_RS01535 PF02910 Fumarate reductase flavoprotein C-term TRD_RS01545 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TRD_RS01555 PF13307 Helicase C-terminal domain TRD_RS01555 PF04851 Type III restriction enzyme, res subunit TRD_RS01555 PF00929 Exonuclease TRD_RS01560 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TRD_RS01565 PF07497 Rho termination factor, RNA-binding domain TRD_RS01565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRD_RS01565 PF07498 Rho termination factor, N-terminal domain TRD_RS01575 PF00561 alpha/beta hydrolase fold TRD_RS01585 PF04452 RNA methyltransferase TRD_RS01595 PF00132 Bacterial transferase hexapeptide (six repeats) TRD_RS01595 PF12804 MobA-like NTP transferase domain TRD_RS01610 PF04127 DNA / pantothenate metabolism flavoprotein TRD_RS01610 PF02441 Flavoprotein TRD_RS01625 PF00781 Diacylglycerol kinase catalytic domain TRD_RS01625 PF02142 MGS-like domain TRD_RS01630 PF13464 Domain of unknown function (DUF4115) TRD_RS01640 PF00919 Uncharacterized protein family UPF0004 TRD_RS01640 PF01938 TRAM domain TRD_RS01640 PF04055 Radical SAM superfamily TRD_RS01665 PF12804 MobA-like NTP transferase domain TRD_RS01680 PF01522 Polysaccharide deacetylase TRD_RS01685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRD_RS01685 PF00205 Thiamine pyrophosphate enzyme, central domain TRD_RS01685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRD_RS01690 PF00682 HMGL-like TRD_RS01690 PF08502 LeuA allosteric (dimerisation) domain TRD_RS01695 PF01118 Semialdehyde dehydrogenase, NAD binding domain TRD_RS01695 PF02774 Semialdehyde dehydrogenase, dimerisation domain TRD_RS01700 PF00742 Homoserine dehydrogenase TRD_RS01700 PF01842 ACT domain TRD_RS01700 PF03447 Homoserine dehydrogenase, NAD binding domain TRD_RS01705 PF00561 alpha/beta hydrolase fold TRD_RS01715 PF03176 MMPL family TRD_RS01720 PF00982 Glycosyltransferase family 20 TRD_RS01730 PF01522 Polysaccharide deacetylase TRD_RS01740 PF01883 Iron-sulfur cluster assembly protein TRD_RS01745 PF01592 NifU-like N terminal domain TRD_RS01750 PF00266 Aminotransferase class-V TRD_RS01755 PF01458 Uncharacterized protein family (UPF0051) TRD_RS01760 PF01458 Uncharacterized protein family (UPF0051) TRD_RS01765 PF00005 ABC transporter TRD_RS01770 PF01475 Ferric uptake regulator family TRD_RS01785 PF00929 Exonuclease TRD_RS01795 PF07969 Amidohydrolase family TRD_RS01800 PF07969 Amidohydrolase family TRD_RS01810 PF00266 Aminotransferase class-V TRD_RS01815 PF01053 Cys/Met metabolism PLP-dependent enzyme TRD_RS01820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS01825 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS01830 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS01830 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS01835 PF08543 Phosphomethylpyrimidine kinase TRD_RS01840 PF05690 Thiazole biosynthesis protein ThiG TRD_RS01845 PF02581 Thiamine monophosphate synthase TRD_RS01850 PF02581 Thiamine monophosphate synthase TRD_RS01850 PF17792 ThiD2 family TRD_RS01855 PF02597 ThiS family TRD_RS01860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TRD_RS01860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TRD_RS01865 PF00892 EamA-like transporter family TRD_RS01870 PF01043 SecA preprotein cross-linking domain TRD_RS01870 PF07517 SecA DEAD-like domain TRD_RS01870 PF02810 SEC-C motif TRD_RS01870 PF07516 SecA Wing and Scaffold domain TRD_RS01875 PF00230 Major intrinsic protein TRD_RS01890 PF02630 SCO1/SenC TRD_RS01905 PF00296 Luciferase-like monooxygenase TRD_RS01910 PF05173 Dihydrodipicolinate reductase, C-terminus TRD_RS01910 PF01113 Dihydrodipicolinate reductase, N-terminus TRD_RS01915 PF00701 Dihydrodipicolinate synthetase family TRD_RS01925 PF00534 Glycosyl transferases group 1 TRD_RS01925 PF13439 Glycosyltransferase Family 4 TRD_RS01940 PF12390 Selenocysteine synthase N terminal TRD_RS01940 PF03841 L-seryl-tRNA selenium transferase TRD_RS01945 PF08275 DNA primase catalytic core, N-terminal domain TRD_RS01945 PF01807 CHC2 zinc finger TRD_RS01945 PF10410 DnaB-helicase binding domain of primase TRD_RS01950 PF13286 Phosphohydrolase-associated domain TRD_RS01950 PF01966 HD domain TRD_RS01955 PF01571 Aminomethyltransferase folate-binding domain TRD_RS01965 PF02151 UvrB/uvrC motif TRD_RS01965 PF08459 UvrC Helix-hairpin-helix N-terminal TRD_RS01965 PF01541 GIY-YIG catalytic domain TRD_RS01970 PF01300 Telomere recombination TRD_RS01975 PF04101 Glycosyltransferase family 28 C-terminal domain TRD_RS01975 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase TRD_RS01990 PF16193 AAA C-terminal domain TRD_RS01990 PF12002 MgsA AAA+ ATPase C terminal TRD_RS01990 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS01995 PF01138 3' exoribonuclease family, domain 1 TRD_RS01995 PF03725 3' exoribonuclease family, domain 2 TRD_RS02000 PF00475 Imidazoleglycerol-phosphate dehydratase TRD_RS02005 PF00155 Aminotransferase class I and II TRD_RS02015 PF01479 S4 domain TRD_RS02015 PF00849 RNA pseudouridylate synthase TRD_RS02020 PF02224 Cytidylate kinase TRD_RS02040 PF13411 MerR HTH family regulatory protein TRD_RS02045 PF17871 AAA lid domain TRD_RS02045 PF10431 C-terminal, D2-small domain, of ClpB protein TRD_RS02045 PF02861 Clp amino terminal domain, pathogenicity island component TRD_RS02045 PF07724 AAA domain (Cdc48 subfamily) TRD_RS02045 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS02060 PF01717 Cobalamin-independent synthase, Catalytic domain TRD_RS02070 PF00793 DAHP synthetase I family TRD_RS02070 PF18152 DAHP synthase ferredoxin-like domain TRD_RS02080 PF13439 Glycosyltransferase Family 4 TRD_RS02095 PF03328 HpcH/HpaI aldolase/citrate lyase family TRD_RS02105 PF02629 CoA binding domain TRD_RS02105 PF06971 Putative DNA-binding protein N-terminus TRD_RS02110 PF02540 NAD synthase TRD_RS02110 PF00795 Carbon-nitrogen hydrolase TRD_RS02115 PF02463 RecF/RecN/SMC N terminal domain TRD_RS02120 PF02575 YbaB/EbfC DNA-binding family TRD_RS02125 PF00296 Luciferase-like monooxygenase TRD_RS02155 PF00037 4Fe-4S binding domain TRD_RS02155 PF13247 4Fe-4S dicluster domain TRD_RS02160 PF01568 Molydopterin dinucleotide binding domain TRD_RS02160 PF00384 Molybdopterin oxidoreductase TRD_RS02195 PF00456 Transketolase, thiamine diphosphate binding domain TRD_RS02200 PF02780 Transketolase, C-terminal domain TRD_RS02200 PF02779 Transketolase, pyrimidine binding domain TRD_RS02205 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TRD_RS02220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TRD_RS02220 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TRD_RS02220 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TRD_RS02225 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TRD_RS02230 PF02233 NAD(P) transhydrogenase beta subunit TRD_RS02245 PF03572 Peptidase family S41 TRD_RS02245 PF00595 PDZ domain TRD_RS02255 PF02585 GlcNAc-PI de-N-acetylase TRD_RS02265 PF02673 Bacitracin resistance protein BacA TRD_RS02270 PF07690 Major Facilitator Superfamily TRD_RS02275 PF01588 Putative tRNA binding domain TRD_RS02285 PF01274 Malate synthase TRD_RS02295 PF03466 LysR substrate binding domain TRD_RS02295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TRD_RS02315 PF01872 RibD C-terminal domain TRD_RS02315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TRD_RS02320 PF00677 Lumazine binding domain TRD_RS02325 PF00925 GTP cyclohydrolase II TRD_RS02325 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TRD_RS02330 PF00885 6,7-dimethyl-8-ribityllumazine synthase TRD_RS02340 PF02585 GlcNAc-PI de-N-acetylase TRD_RS02345 PF09105 Elongation factor SelB, winged helix TRD_RS02345 PF03144 Elongation factor Tu domain 2 TRD_RS02345 PF00009 Elongation factor Tu GTP binding domain TRD_RS02345 PF09107 Elongation factor SelB, winged helix TRD_RS02345 PF09106 Elongation factor SelB, winged helix TRD_RS02355 PF03190 Protein of unknown function, DUF255 TRD_RS02370 PF00883 Cytosol aminopeptidase family, catalytic domain TRD_RS02370 PF02789 Cytosol aminopeptidase family, N-terminal domain TRD_RS02390 PF01209 ubiE/COQ5 methyltransferase family TRD_RS02405 PF13416 Bacterial extracellular solute-binding protein TRD_RS02410 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS02415 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS02420 PF08402 TOBE domain TRD_RS02420 PF00005 ABC transporter TRD_RS02425 PF08245 Mur ligase middle domain TRD_RS02425 PF02875 Mur ligase family, glutamate ligase domain TRD_RS02435 PF10609 NUBPL iron-transfer P-loop NTPase TRD_RS02435 PF01883 Iron-sulfur cluster assembly protein TRD_RS02440 PF02801 Beta-ketoacyl synthase, C-terminal domain TRD_RS02440 PF00109 Beta-ketoacyl synthase, N-terminal domain TRD_RS02445 PF00491 Arginase family TRD_RS02450 PF00491 Arginase family TRD_RS02455 PF09347 Domain of unknown function (DUF1989) TRD_RS02460 PF01979 Amidohydrolase family TRD_RS02460 PF00449 Urease alpha-subunit, N-terminal domain TRD_RS02465 PF00547 Urease, gamma subunit TRD_RS02465 PF00699 Urease beta subunit TRD_RS02470 PF00547 Urease, gamma subunit TRD_RS02470 PF00699 Urease beta subunit TRD_RS02490 PF01165 Ribosomal protein S21 TRD_RS02500 PF03070 TENA/THI-4/PQQC family TRD_RS02505 PF03070 TENA/THI-4/PQQC family TRD_RS02510 PF00483 Nucleotidyl transferase TRD_RS02515 PF00750 tRNA synthetases class I (R) TRD_RS02515 PF05746 DALR anticodon binding domain TRD_RS02515 PF03485 Arginyl tRNA synthetase N terminal domain TRD_RS02520 PF03816 Cell envelope-related transcriptional attenuator domain TRD_RS02525 PF00692 dUTPase TRD_RS02530 PF01923 Cobalamin adenosyltransferase TRD_RS02535 PF01061 ABC-2 type transporter TRD_RS02555 PF02899 Phage integrase, N-terminal SAM-like domain TRD_RS02555 PF00589 Phage integrase family TRD_RS02560 PF13732 Domain of unknown function (DUF4162) TRD_RS02560 PF00005 ABC transporter TRD_RS02575 PF09125 Cytochrome C oxidase subunit II, transmembrane TRD_RS02575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TRD_RS02580 PF00115 Cytochrome C and Quinol oxidase polypeptide I TRD_RS02585 PF00205 Thiamine pyrophosphate enzyme, central domain TRD_RS02585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRD_RS02585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRD_RS02590 PF00561 alpha/beta hydrolase fold TRD_RS02595 PF02817 e3 binding domain TRD_RS02595 PF00364 Biotin-requiring enzyme TRD_RS02595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TRD_RS02600 PF16078 2-oxoglutarate dehydrogenase N-terminus TRD_RS02600 PF00676 Dehydrogenase E1 component TRD_RS02600 PF16870 2-oxoglutarate dehydrogenase C-terminal TRD_RS02600 PF02779 Transketolase, pyrimidine binding domain TRD_RS02610 PF01769 Divalent cation transporter TRD_RS02610 PF03448 MgtE intracellular N domain TRD_RS02610 PF00571 CBS domain TRD_RS02620 PF07690 Major Facilitator Superfamily TRD_RS02625 PF14716 Helix-hairpin-helix domain TRD_RS02625 PF14791 DNA polymerase beta thumb TRD_RS02625 PF02811 PHP domain TRD_RS02640 PF00696 Amino acid kinase family TRD_RS02645 PF06545 Protein of unknown function (DUF1116) TRD_RS02650 PF02629 CoA binding domain TRD_RS02650 PF00549 CoA-ligase TRD_RS02660 PF00941 FAD binding domain in molybdopterin dehydrogenase TRD_RS02660 PF03450 CO dehydrogenase flavoprotein C-terminal domain TRD_RS02665 PF00111 2Fe-2S iron-sulfur cluster binding domain TRD_RS02665 PF01799 [2Fe-2S] binding domain TRD_RS02670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TRD_RS02670 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TRD_RS02675 PF04199 Putative cyclase TRD_RS02685 PF08240 Alcohol dehydrogenase GroES-like domain TRD_RS02690 PF00690 Cation transporter/ATPase, N-terminus TRD_RS02690 PF00689 Cation transporting ATPase, C-terminus TRD_RS02720 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TRD_RS02720 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TRD_RS02725 PF02445 Quinolinate synthetase A protein TRD_RS02730 PF09084 NMT1/THI5 like TRD_RS02735 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS02740 PF00005 ABC transporter TRD_RS02755 PF12706 Beta-lactamase superfamily domain TRD_RS02775 PF00586 AIR synthase related protein, N-terminal domain TRD_RS02775 PF02769 AIR synthase related protein, C-terminal domain TRD_RS02780 PF00365 Phosphofructokinase TRD_RS02785 PF03129 Anticodon binding domain TRD_RS02785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRD_RS02785 PF09180 Prolyl-tRNA synthetase, C-terminal TRD_RS02805 PF00834 Ribulose-phosphate 3 epimerase family TRD_RS02815 PF00498 FHA domain TRD_RS02830 PF00535 Glycosyl transferase family 2 TRD_RS02835 PF02594 Uncharacterised ACR, YggU family COG1872 TRD_RS02840 PF02540 NAD synthase TRD_RS02850 PF01138 3' exoribonuclease family, domain 1 TRD_RS02850 PF00013 KH domain TRD_RS02850 PF03725 3' exoribonuclease family, domain 2 TRD_RS02850 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TRD_RS02850 PF00575 S1 RNA binding domain TRD_RS02855 PF00312 Ribosomal protein S15 TRD_RS02860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TRD_RS02860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TRD_RS02865 PF10369 Small subunit of acetolactate synthase TRD_RS02870 PF00205 Thiamine pyrophosphate enzyme, central domain TRD_RS02870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRD_RS02870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRD_RS02880 PF00072 Response regulator receiver domain TRD_RS02880 PF00486 Transcriptional regulatory protein, C terminal TRD_RS02900 PF01330 RuvA N terminal domain TRD_RS02900 PF07499 RuvA, C-terminal domain TRD_RS02905 PF00815 Histidinol dehydrogenase TRD_RS02910 PF01634 ATP phosphoribosyltransferase TRD_RS02915 PF03129 Anticodon binding domain TRD_RS02915 PF13393 Histidyl-tRNA synthetase TRD_RS02920 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TRD_RS02920 PF01588 Putative tRNA binding domain TRD_RS02920 PF03484 tRNA synthetase B5 domain TRD_RS02920 PF03147 Ferredoxin-fold anticodon binding domain TRD_RS02920 PF03483 B3/4 domain TRD_RS02925 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TRD_RS02925 PF01409 tRNA synthetases class II core domain (F) TRD_RS02930 PF00113 Enolase, C-terminal TIM barrel domain TRD_RS02930 PF03952 Enolase, N-terminal domain TRD_RS02935 PF01676 Metalloenzyme superfamily TRD_RS02935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TRD_RS02940 PF00920 Dehydratase family TRD_RS02945 PF02222 ATP-grasp domain TRD_RS02945 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TRD_RS02950 PF00731 AIR carboxylase TRD_RS02955 PF18324 Hypothetical protein TT1725 TRD_RS02955 PF00180 Isocitrate/isopropylmalate dehydrogenase TRD_RS02960 PF01593 Flavin containing amine oxidoreductase TRD_RS02965 PF07549 SecD/SecF GG Motif TRD_RS02965 PF02355 Protein export membrane protein TRD_RS02970 PF02355 Protein export membrane protein TRD_RS02975 PF01467 Cytidylyltransferase-like TRD_RS02985 PF03989 DNA gyrase C-terminal domain, beta-propeller TRD_RS02985 PF00521 DNA gyrase/topoisomerase IV, subunit A TRD_RS03000 PF01658 Myo-inositol-1-phosphate synthase TRD_RS03010 PF13439 Glycosyltransferase Family 4 TRD_RS03010 PF00534 Glycosyl transferases group 1 TRD_RS03015 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TRD_RS03020 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TRD_RS03025 PF07977 FabA-like domain TRD_RS03030 PF00709 Adenylosuccinate synthetase TRD_RS03035 PF00684 DnaJ central domain TRD_RS03035 PF01556 DnaJ C terminal domain TRD_RS03035 PF00226 DnaJ domain TRD_RS03050 PF00717 Peptidase S24-like TRD_RS03050 PF01726 LexA DNA binding domain TRD_RS03060 PF00488 MutS domain V TRD_RS03060 PF01713 Smr domain TRD_RS03070 PF00270 DEAD/DEAH box helicase TRD_RS03070 PF00271 Helicase conserved C-terminal domain TRD_RS03070 PF17757 UvrB interaction domain TRD_RS03070 PF03461 TRCF domain TRD_RS03070 PF02559 CarD-like/TRCF domain TRD_RS03075 PF10531 SLBB domain TRD_RS03095 PF00009 Elongation factor Tu GTP binding domain TRD_RS03095 PF03143 Elongation factor Tu C-terminal domain TRD_RS03095 PF03144 Elongation factor Tu domain 2 TRD_RS03100 PF00471 Ribosomal protein L33 TRD_RS03115 PF02357 Transcription termination factor nusG TRD_RS03115 PF00467 KOW motif TRD_RS03120 PF00298 Ribosomal protein L11, RNA binding domain TRD_RS03120 PF03946 Ribosomal protein L11, N-terminal domain TRD_RS03125 PF00687 Ribosomal protein L1p/L10e family TRD_RS03130 PF00466 Ribosomal protein L10 TRD_RS03135 PF00542 Ribosomal protein L7/L12 C-terminal domain TRD_RS03135 PF16320 Ribosomal protein L7/L12 dimerisation domain TRD_RS03145 PF00072 Response regulator receiver domain TRD_RS03145 PF03861 ANTAR domain TRD_RS03155 PF02457 DisA bacterial checkpoint controller nucleotide-binding TRD_RS03165 PF01695 IstB-like ATP binding protein TRD_RS03175 PF03796 DnaB-like helicase C terminal domain TRD_RS03175 PF00772 DnaB-like helicase N terminal domain TRD_RS03180 PF03948 Ribosomal protein L9, C-terminal domain TRD_RS03180 PF01281 Ribosomal protein L9, N-terminal domain TRD_RS03195 PF08032 RNA 2'-O ribose methyltransferase substrate binding TRD_RS03195 PF00588 SpoU rRNA Methylase family TRD_RS03200 PF09190 DALR domain TRD_RS03200 PF01406 tRNA synthetases class I (C) catalytic domain TRD_RS03205 PF09723 Zinc ribbon domain TRD_RS03210 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TRD_RS03210 PF01367 5'-3' exonuclease, C-terminal SAM fold TRD_RS03210 PF00476 DNA polymerase family A TRD_RS03210 PF01612 3'-5' exonuclease TRD_RS03215 PF07726 ATPase family associated with various cellular activities (AAA) TRD_RS03215 PF17863 AAA lid domain TRD_RS03225 PF13559 Domain of unknown function (DUF4129) TRD_RS03225 PF11992 Domain of unknown function (DUF3488) TRD_RS03225 PF01841 Transglutaminase-like superfamily TRD_RS03230 PF00294 pfkB family carbohydrate kinase TRD_RS03235 PF03030 Inorganic H+ pyrophosphatase TRD_RS03245 PF00510 Cytochrome c oxidase subunit III TRD_RS03250 PF00115 Cytochrome C and Quinol oxidase polypeptide I TRD_RS03255 PF00034 Cytochrome c TRD_RS03255 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TRD_RS03255 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TRD_RS03265 PF16177 Acetyl-coenzyme A synthetase N-terminus TRD_RS03265 PF00501 AMP-binding enzyme TRD_RS03265 PF13193 AMP-binding enzyme C-terminal domain TRD_RS03270 PF02803 Thiolase, C-terminal domain TRD_RS03270 PF00108 Thiolase, N-terminal domain TRD_RS03275 PF02463 RecF/RecN/SMC N terminal domain TRD_RS03280 PF02767 DNA polymerase III beta subunit, central domain TRD_RS03280 PF00712 DNA polymerase III beta subunit, N-terminal domain TRD_RS03280 PF02768 DNA polymerase III beta subunit, C-terminal domain TRD_RS03290 PF00266 Aminotransferase class-V TRD_RS03295 PF02547 Queuosine biosynthesis protein TRD_RS03300 PF17864 RuvB AAA lid domain TRD_RS03300 PF05496 Holliday junction DNA helicase RuvB P-loop domain TRD_RS03300 PF05491 RuvB C-terminal winged helix domain TRD_RS03305 PF03966 Trm112p-like protein TRD_RS03320 PF02254 TrkA-N domain TRD_RS03320 PF02080 TrkA-C domain TRD_RS03320 PF00999 Sodium/hydrogen exchanger family TRD_RS03330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TRD_RS03330 PF02272 DHHA1 domain TRD_RS03330 PF01411 tRNA synthetases class II (A) TRD_RS03340 PF03652 Holliday junction resolvase TRD_RS03345 PF06153 Cyclic-di-AMP receptor TRD_RS03355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TRD_RS03355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TRD_RS03370 PF14579 Helix-hairpin-helix motif TRD_RS03370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRD_RS03370 PF02811 PHP domain TRD_RS03370 PF07733 Bacterial DNA polymerase III alpha NTPase domain TRD_RS03375 PF08245 Mur ligase middle domain TRD_RS03375 PF08443 RimK-like ATP-grasp domain TRD_RS03375 PF02875 Mur ligase family, glutamate ligase domain TRD_RS03385 PF01725 Ham1 family TRD_RS03390 PF01026 TatD related DNase TRD_RS03395 PF01380 SIS domain TRD_RS03400 PF10397 Adenylosuccinate lyase C-terminus TRD_RS03400 PF00206 Lyase TRD_RS03405 PF01259 SAICAR synthetase TRD_RS03410 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TRD_RS03420 PF00586 AIR synthase related protein, N-terminal domain TRD_RS03420 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TRD_RS03420 PF02769 AIR synthase related protein, C-terminal domain TRD_RS03425 PF00156 Phosphoribosyl transferase domain TRD_RS03425 PF13537 Glutamine amidotransferase domain TRD_RS03430 PF08669 Glycine cleavage T-protein C-terminal barrel domain TRD_RS03430 PF01571 Aminomethyltransferase folate-binding domain TRD_RS03435 PF01597 Glycine cleavage H-protein TRD_RS03440 PF02347 Glycine cleavage system P-protein TRD_RS03445 PF01926 50S ribosome-binding GTPase TRD_RS03445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TRD_RS03450 PF00464 Serine hydroxymethyltransferase TRD_RS03455 PF00953 Glycosyl transferase family 4 TRD_RS03470 PF03109 ABC1 family TRD_RS03475 PF01435 Peptidase family M48 TRD_RS03510 PF00107 Zinc-binding dehydrogenase TRD_RS03510 PF08240 Alcohol dehydrogenase GroES-like domain TRD_RS03515 PF01479 S4 domain TRD_RS03515 PF00579 tRNA synthetases class I (W and Y) TRD_RS03520 PF06574 FAD synthetase TRD_RS03520 PF01687 Riboflavin kinase TRD_RS03525 PF01509 TruB family pseudouridylate synthase (N terminal domain) TRD_RS03525 PF16198 tRNA pseudouridylate synthase B C-terminal domain TRD_RS03535 PF02033 Ribosome-binding factor A TRD_RS03540 PF00009 Elongation factor Tu GTP binding domain TRD_RS03540 PF11987 Translation-initiation factor 2 TRD_RS03540 PF04760 Translation initiation factor IF-2, N-terminal region TRD_RS03545 PF04296 Protein of unknown function (DUF448) TRD_RS03550 PF13184 NusA-like KH domain TRD_RS03550 PF08529 NusA N-terminal domain TRD_RS03550 PF00575 S1 RNA binding domain TRD_RS03555 PF01933 Uncharacterised protein family UPF0052 TRD_RS03560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TRD_RS03560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TRD_RS03565 PF00162 Phosphoglycerate kinase TRD_RS03570 PF00121 Triosephosphate isomerase TRD_RS03580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS03585 PF02416 mttA/Hcf106 family TRD_RS03605 PF10502 Signal peptidase, peptidase S26 TRD_RS03630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TRD_RS03630 PF00037 4Fe-4S binding domain TRD_RS03630 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TRD_RS03635 PF02423 Ornithine cyclodeaminase/mu-crystallin family TRD_RS03645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TRD_RS03645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TRD_RS03650 PF02801 Beta-ketoacyl synthase, C-terminal domain TRD_RS03650 PF00109 Beta-ketoacyl synthase, N-terminal domain TRD_RS03660 PF04539 Sigma-70 region 3 TRD_RS03660 PF04545 Sigma-70, region 4 TRD_RS03660 PF04542 Sigma-70 region 2 TRD_RS03660 PF00140 Sigma-70 factor, region 1.2 TRD_RS03660 PF03979 Sigma-70 factor, region 1.1 TRD_RS03665 PF02075 Crossover junction endodeoxyribonuclease RuvC TRD_RS03670 PF01728 FtsJ-like methyltransferase TRD_RS03670 PF01479 S4 domain TRD_RS03675 PF00731 AIR carboxylase TRD_RS03685 PF02310 B12 binding domain TRD_RS03685 PF01642 Methylmalonyl-CoA mutase TRD_RS03695 PF01195 Peptidyl-tRNA hydrolase TRD_RS03705 PF02416 mttA/Hcf106 family TRD_RS03715 PF01702 Queuine tRNA-ribosyltransferase TRD_RS03720 PF00708 Acylphosphatase TRD_RS03725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TRD_RS03725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TRD_RS03725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TRD_RS03730 PF01648 4'-phosphopantetheinyl transferase superfamily TRD_RS03735 PF01256 Carbohydrate kinase TRD_RS03735 PF03853 YjeF-related protein N-terminus TRD_RS03740 PF00478 IMP dehydrogenase / GMP reductase domain TRD_RS03740 PF00571 CBS domain TRD_RS03750 PF12706 Beta-lactamase superfamily domain TRD_RS03755 PF01168 Alanine racemase, N-terminal domain TRD_RS03760 PF02578 Multi-copper polyphenol oxidoreductase laccase TRD_RS03765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRD_RS03765 PF00205 Thiamine pyrophosphate enzyme, central domain TRD_RS03765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRD_RS03770 PF04493 Endonuclease V TRD_RS03775 PF00551 Formyl transferase TRD_RS03775 PF02911 Formyl transferase, C-terminal domain TRD_RS03790 PF05198 Translation initiation factor IF-3, N-terminal domain TRD_RS03790 PF00707 Translation initiation factor IF-3, C-terminal domain TRD_RS03795 PF01632 Ribosomal protein L35 TRD_RS03800 PF00453 Ribosomal protein L20 TRD_RS03805 PF00588 SpoU rRNA Methylase family TRD_RS03805 PF08032 RNA 2'-O ribose methyltransferase substrate binding TRD_RS03810 PF00216 Bacterial DNA-binding protein TRD_RS03815 PF01751 Toprim domain TRD_RS03815 PF00204 DNA gyrase B TRD_RS03815 PF00986 DNA gyrase B subunit, carboxyl terminus TRD_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS03830 PF00905 Penicillin binding protein transpeptidase domain TRD_RS03835 PF01098 Cell cycle protein TRD_RS03840 PF01048 Phosphorylase superfamily TRD_RS03855 PF01370 NAD dependent epimerase/dehydratase family TRD_RS03895 PF01649 Ribosomal protein S20 TRD_RS03900 PF03023 Lipid II flippase MurJ TRD_RS03905 PF03144 Elongation factor Tu domain 2 TRD_RS03905 PF00679 Elongation factor G C-terminus TRD_RS03905 PF06421 GTP-binding protein LepA C-terminus TRD_RS03905 PF00009 Elongation factor Tu GTP binding domain TRD_RS03910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TRD_RS03910 PF03819 MazG nucleotide pyrophosphohydrolase domain TRD_RS03915 PF02938 GAD domain TRD_RS03915 PF00152 tRNA synthetases class II (D, K and N) TRD_RS03915 PF01336 OB-fold nucleic acid binding domain TRD_RS03920 PF05067 Manganese containing catalase TRD_RS03925 PF01475 Ferric uptake regulator family TRD_RS03955 PF13167 GTP-binding GTPase N-terminal TRD_RS03955 PF01926 50S ribosome-binding GTPase TRD_RS03955 PF16360 GTP-binding GTPase Middle Region TRD_RS03965 PF00586 AIR synthase related protein, N-terminal domain TRD_RS03965 PF02769 AIR synthase related protein, C-terminal domain TRD_RS03970 PF00025 ADP-ribosylation factor family TRD_RS03975 PF02541 Ppx/GppA phosphatase family TRD_RS03980 PF02142 MGS-like domain TRD_RS03980 PF01808 AICARFT/IMPCHase bienzyme TRD_RS04000 PF04294 VanW like protein TRD_RS04005 PF01042 Endoribonuclease L-PSP TRD_RS04015 PF01272 Transcription elongation factor, GreA/GreB, C-term TRD_RS04015 PF03449 Transcription elongation factor, N-terminal TRD_RS04020 PF01336 OB-fold nucleic acid binding domain TRD_RS04020 PF00152 tRNA synthetases class II (D, K and N) TRD_RS04025 PF01594 AI-2E family transporter TRD_RS04030 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS04035 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS04045 PF01546 Peptidase family M20/M25/M40 TRD_RS04055 PF08402 TOBE domain TRD_RS04055 PF00005 ABC transporter TRD_RS04060 PF01039 Carboxyl transferase domain TRD_RS04060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TRD_RS04060 PF17848 Acetyl-coA carboxylase zinc finger domain TRD_RS04080 PF01266 FAD dependent oxidoreductase TRD_RS04085 PF01743 Poly A polymerase head domain TRD_RS04085 PF00571 CBS domain TRD_RS04090 PF08669 Glycine cleavage T-protein C-terminal barrel domain TRD_RS04090 PF01266 FAD dependent oxidoreductase TRD_RS04090 PF01571 Aminomethyltransferase folate-binding domain TRD_RS04090 PF16350 FAD dependent oxidoreductase central domain TRD_RS04110 PF00205 Thiamine pyrophosphate enzyme, central domain TRD_RS04110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRD_RS04125 PF02219 Methylenetetrahydrofolate reductase TRD_RS04130 PF01268 Formate--tetrahydrofolate ligase TRD_RS04135 PF01571 Aminomethyltransferase folate-binding domain TRD_RS04150 PF02585 GlcNAc-PI de-N-acetylase TRD_RS04160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TRD_RS04190 PF03786 D-mannonate dehydratase (UxuA) TRD_RS04200 PF04362 Bacterial Fe(2+) trafficking TRD_RS04210 PF16363 GDP-mannose 4,6 dehydratase TRD_RS04215 PF00438 S-adenosylmethionine synthetase, N-terminal domain TRD_RS04215 PF02772 S-adenosylmethionine synthetase, central domain TRD_RS04215 PF02773 S-adenosylmethionine synthetase, C-terminal domain TRD_RS04220 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TRD_RS04220 PF05221 S-adenosyl-L-homocysteine hydrolase TRD_RS04225 PF01008 Initiation factor 2 subunit family TRD_RS04235 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TRD_RS04235 PF00056 lactate/malate dehydrogenase, NAD binding domain TRD_RS04240 PF00994 Probable molybdopterin binding domain TRD_RS04240 PF03454 MoeA C-terminal region (domain IV) TRD_RS04240 PF03453 MoeA N-terminal region (domain I and II) TRD_RS04250 PF00480 ROK family TRD_RS04275 PF02875 Mur ligase family, glutamate ligase domain TRD_RS04275 PF08245 Mur ligase middle domain TRD_RS04275 PF01225 Mur ligase family, catalytic domain TRD_RS04280 PF07676 WD40-like Beta Propeller Repeat TRD_RS04280 PF04052 TolB amino-terminal domain TRD_RS04305 PF00149 Calcineurin-like phosphoesterase TRD_RS04320 PF01258 Prokaryotic dksA/traR C4-type zinc finger TRD_RS04325 PF00534 Glycosyl transferases group 1 TRD_RS04330 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TRD_RS04330 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TRD_RS04350 PF02867 Ribonucleotide reductase, barrel domain TRD_RS04350 PF00317 Ribonucleotide reductase, all-alpha domain TRD_RS04350 PF03477 ATP cone domain TRD_RS04355 PF12706 Beta-lactamase superfamily domain TRD_RS04360 PF03576 Peptidase family S58 TRD_RS04365 PF01261 Xylose isomerase-like TIM barrel TRD_RS04370 PF00380 Ribosomal protein S9/S16 TRD_RS04375 PF00572 Ribosomal protein L13 TRD_RS04380 PF01416 tRNA pseudouridine synthase TRD_RS04385 PF01196 Ribosomal protein L17 TRD_RS04390 PF01000 RNA polymerase Rpb3/RpoA insert domain TRD_RS04390 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TRD_RS04390 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TRD_RS04395 PF00163 Ribosomal protein S4/S9 N-terminal domain TRD_RS04395 PF01479 S4 domain TRD_RS04400 PF00411 Ribosomal protein S11 TRD_RS04405 PF00416 Ribosomal protein S13/S18 TRD_RS04410 PF00444 Ribosomal protein L36 TRD_RS04415 PF01176 Translation initiation factor 1A / IF-1 TRD_RS04420 PF00557 Metallopeptidase family M24 TRD_RS04425 PF05191 Adenylate kinase, active site lid TRD_RS04430 PF00344 SecY translocase TRD_RS04435 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TRD_RS04440 PF00327 Ribosomal protein L30p/L7e TRD_RS04445 PF00333 Ribosomal protein S5, N-terminal domain TRD_RS04445 PF03719 Ribosomal protein S5, C-terminal domain TRD_RS04450 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TRD_RS04455 PF00347 Ribosomal protein L6 TRD_RS04460 PF00410 Ribosomal protein S8 TRD_RS04465 PF00673 ribosomal L5P family C-terminus TRD_RS04465 PF00281 Ribosomal protein L5 TRD_RS04470 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TRD_RS04470 PF00467 KOW motif TRD_RS04475 PF00238 Ribosomal protein L14p/L23e TRD_RS04485 PF00831 Ribosomal L29 protein TRD_RS04490 PF00252 Ribosomal protein L16p/L10e TRD_RS04495 PF07650 KH domain TRD_RS04495 PF00189 Ribosomal protein S3, C-terminal domain TRD_RS04500 PF00237 Ribosomal protein L22p/L17e TRD_RS04505 PF00203 Ribosomal protein S19 TRD_RS04510 PF03947 Ribosomal Proteins L2, C-terminal domain TRD_RS04510 PF00181 Ribosomal Proteins L2, RNA binding domain TRD_RS04515 PF00276 Ribosomal protein L23 TRD_RS04520 PF00573 Ribosomal protein L4/L1 family TRD_RS04525 PF00297 Ribosomal protein L3 TRD_RS04530 PF00338 Ribosomal protein S10p/S20e TRD_RS04535 PF00009 Elongation factor Tu GTP binding domain TRD_RS04535 PF03143 Elongation factor Tu C-terminal domain TRD_RS04535 PF03144 Elongation factor Tu domain 2 TRD_RS04540 PF00679 Elongation factor G C-terminus TRD_RS04540 PF00009 Elongation factor Tu GTP binding domain TRD_RS04540 PF14492 Elongation Factor G, domain II TRD_RS04540 PF03144 Elongation factor Tu domain 2 TRD_RS04540 PF03764 Elongation factor G, domain IV TRD_RS04545 PF00177 Ribosomal protein S7p/S5e TRD_RS04550 PF00164 Ribosomal protein S12/S23 TRD_RS04555 PF00623 RNA polymerase Rpb1, domain 2 TRD_RS04555 PF05000 RNA polymerase Rpb1, domain 4 TRD_RS04555 PF04983 RNA polymerase Rpb1, domain 3 TRD_RS04555 PF04998 RNA polymerase Rpb1, domain 5 TRD_RS04555 PF04997 RNA polymerase Rpb1, domain 1 TRD_RS04560 PF04565 RNA polymerase Rpb2, domain 3 TRD_RS04560 PF04563 RNA polymerase beta subunit TRD_RS04560 PF04560 RNA polymerase Rpb2, domain 7 TRD_RS04560 PF10385 RNA polymerase beta subunit external 1 domain TRD_RS04560 PF04561 RNA polymerase Rpb2, domain 2 TRD_RS04560 PF00562 RNA polymerase Rpb2, domain 6 TRD_RS04590 PF00318 Ribosomal protein S2 TRD_RS04595 PF00889 Elongation factor TS TRD_RS04600 PF00696 Amino acid kinase family TRD_RS04610 PF01255 Putative undecaprenyl diphosphate synthase TRD_RS04620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TRD_RS04620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TRD_RS04620 PF13288 DXP reductoisomerase C-terminal domain TRD_RS04625 PF00156 Phosphoribosyl transferase domain TRD_RS04650 PF00437 Type II/IV secretion system protein TRD_RS04655 PF00072 Response regulator receiver domain TRD_RS04655 PF00196 Bacterial regulatory proteins, luxR family TRD_RS04665 PF03706 Lysylphosphatidylglycerol synthase TM region TRD_RS04665 PF09924 Uncharacterised conserved protein (DUF2156) TRD_RS04700 PF07722 Peptidase C26 TRD_RS04705 PF05362 Lon protease (S16) C-terminal proteolytic domain TRD_RS04705 PF02190 ATP-dependent protease La (LON) substrate-binding domain TRD_RS04705 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS04715 PF01040 UbiA prenyltransferase family TRD_RS04725 PF00348 Polyprenyl synthetase TRD_RS04735 PF01156 Inosine-uridine preferring nucleoside hydrolase TRD_RS04745 PF05161 MOFRL family TRD_RS04745 PF13660 Domain of unknown function (DUF4147) TRD_RS04750 PF01479 S4 domain TRD_RS04750 PF00849 RNA pseudouridylate synthase TRD_RS04755 PF01252 Signal peptidase (SPase) II TRD_RS04760 PF03033 Glycosyltransferase family 28 N-terminal domain TRD_RS04760 PF04101 Glycosyltransferase family 28 C-terminal domain TRD_RS04765 PF18073 Rubredoxin metal binding domain TRD_RS04770 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS04770 PF17871 AAA lid domain TRD_RS04770 PF10431 C-terminal, D2-small domain, of ClpB protein TRD_RS04770 PF02861 Clp amino terminal domain, pathogenicity island component TRD_RS04770 PF07724 AAA domain (Cdc48 subfamily) TRD_RS04775 PF00575 S1 RNA binding domain TRD_RS04780 PF00266 Aminotransferase class-V TRD_RS04795 PF13426 PAS domain TRD_RS04795 PF08447 PAS fold TRD_RS04795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRD_RS04800 PF06463 Molybdenum Cofactor Synthesis C TRD_RS04800 PF04055 Radical SAM superfamily TRD_RS04805 PF02585 GlcNAc-PI de-N-acetylase TRD_RS04810 PF13393 Histidyl-tRNA synthetase TRD_RS04810 PF03129 Anticodon binding domain TRD_RS04815 PF00994 Probable molybdopterin binding domain TRD_RS04820 PF07687 Peptidase dimerisation domain TRD_RS04820 PF01546 Peptidase family M20/M25/M40 TRD_RS04825 PF02021 Uncharacterised protein family UPF0102 TRD_RS04830 PF01351 Ribonuclease HII TRD_RS04835 PF01245 Ribosomal protein L19 TRD_RS04840 PF02219 Methylenetetrahydrofolate reductase TRD_RS04840 PF02574 Homocysteine S-methyltransferase TRD_RS04845 PF04542 Sigma-70 region 2 TRD_RS04845 PF08281 Sigma-70, region 4 TRD_RS04860 PF02195 ParB-like nuclease domain TRD_RS04860 PF17762 HTH domain found in ParB protein TRD_RS04865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRD_RS04865 PF03129 Anticodon binding domain TRD_RS04870 PF02899 Phage integrase, N-terminal SAM-like domain TRD_RS04870 PF00589 Phage integrase family TRD_RS04875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TRD_RS04875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TRD_RS04880 PF02163 Peptidase family M50 TRD_RS04880 PF17820 PDZ domain TRD_RS04885 PF04551 GcpE protein TRD_RS04890 PF00294 pfkB family carbohydrate kinase TRD_RS04895 PF08331 Domain of unknown function (DUF1730) TRD_RS04900 PF00311 Phosphoenolpyruvate carboxylase TRD_RS04905 PF03309 Type III pantothenate kinase TRD_RS04910 PF05343 M42 glutamyl aminopeptidase TRD_RS04915 PF03764 Elongation factor G, domain IV TRD_RS04915 PF00679 Elongation factor G C-terminus TRD_RS04915 PF03144 Elongation factor Tu domain 2 TRD_RS04915 PF14492 Elongation Factor G, domain II TRD_RS04915 PF00009 Elongation factor Tu GTP binding domain TRD_RS04920 PF00300 Histidine phosphatase superfamily (branch 1) TRD_RS04920 PF13456 Reverse transcriptase-like TRD_RS04930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRD_RS04930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TRD_RS04930 PF03129 Anticodon binding domain TRD_RS04930 PF02824 TGS domain TRD_RS04935 PF01244 Membrane dipeptidase (Peptidase family M19) TRD_RS04945 PF13344 Haloacid dehalogenase-like hydrolase TRD_RS04950 PF01546 Peptidase family M20/M25/M40 TRD_RS04950 PF07687 Peptidase dimerisation domain TRD_RS04955 PF03737 Aldolase/RraA TRD_RS04970 PF13732 Domain of unknown function (DUF4162) TRD_RS04970 PF00005 ABC transporter TRD_RS04975 PF01047 MarR family TRD_RS04990 PF01967 MoaC family TRD_RS05000 PF00202 Aminotransferase class-III TRD_RS05005 PF01272 Transcription elongation factor, GreA/GreB, C-term TRD_RS05005 PF03449 Transcription elongation factor, N-terminal TRD_RS05010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRD_RS05010 PF03129 Anticodon binding domain TRD_RS05010 PF04073 Aminoacyl-tRNA editing domain TRD_RS05020 PF14804 Jag N-terminus TRD_RS05020 PF01424 R3H domain TRD_RS05025 PF02096 60Kd inner membrane protein TRD_RS05025 PF14849 YidC periplasmic domain TRD_RS05030 PF01809 Putative membrane protein insertion efficiency factor TRD_RS05035 PF00825 Ribonuclease P TRD_RS05040 PF00468 Ribosomal protein L34 TRD_RS05045 PF00144 Beta-lactamase TRD_RS05070 PF08264 Anticodon-binding domain of tRNA TRD_RS05070 PF00133 tRNA synthetases class I (I, L, M and V) TRD_RS05085 PF00365 Phosphofructokinase TRD_RS05095 PF01177 Asp/Glu/Hydantoin racemase TRD_RS05125 PF00202 Aminotransferase class-III TRD_RS05130 PF01645 Conserved region in glutamate synthase TRD_RS05130 PF00310 Glutamine amidotransferases class-II TRD_RS05130 PF04898 Glutamate synthase central domain TRD_RS05130 PF01493 GXGXG motif TRD_RS05135 PF00543 Nitrogen regulatory protein P-II TRD_RS05140 PF00909 Ammonium Transporter Family TRD_RS05155 PF01624 MutS domain I TRD_RS05155 PF05188 MutS domain II TRD_RS05155 PF05192 MutS domain III TRD_RS05155 PF05190 MutS family domain IV TRD_RS05155 PF00488 MutS domain V TRD_RS05165 PF00474 Sodium:solute symporter family TRD_RS05185 PF13193 AMP-binding enzyme C-terminal domain TRD_RS05185 PF00501 AMP-binding enzyme TRD_RS05185 PF16177 Acetyl-coenzyme A synthetase N-terminus TRD_RS05190 PF00892 EamA-like transporter family TRD_RS05195 PF01804 Penicillin amidase TRD_RS05210 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TRD_RS05210 PF01488 Shikimate / quinate 5-dehydrogenase TRD_RS05215 PF00202 Aminotransferase class-III TRD_RS05220 PF00490 Delta-aminolevulinic acid dehydratase TRD_RS05235 PF01227 GTP cyclohydrolase I TRD_RS05240 PF12804 MobA-like NTP transferase domain TRD_RS05240 PF01066 CDP-alcohol phosphatidyltransferase TRD_RS05245 PF03328 HpcH/HpaI aldolase/citrate lyase family TRD_RS05255 PF00270 DEAD/DEAH box helicase TRD_RS05255 PF00271 Helicase conserved C-terminal domain TRD_RS05260 PF01709 Transcriptional regulator TRD_RS05270 PF03841 L-seryl-tRNA selenium transferase TRD_RS05275 PF17912 MalK OB fold domain TRD_RS05275 PF00005 ABC transporter TRD_RS05280 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS05285 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS05295 PF13193 AMP-binding enzyme C-terminal domain TRD_RS05295 PF00501 AMP-binding enzyme TRD_RS05295 PF16177 Acetyl-coenzyme A synthetase N-terminus TRD_RS05300 PF04075 F420H(2)-dependent quinone reductase TRD_RS05305 PF00923 Transaldolase/Fructose-6-phosphate aldolase TRD_RS05310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TRD_RS05310 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TRD_RS05315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TRD_RS05315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TRD_RS05325 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TRD_RS05335 PF04238 Protein of unknown function (DUF420) TRD_RS05345 PF00005 ABC transporter TRD_RS05380 PF14693 Ribosomal protein TL5, C-terminal domain TRD_RS05380 PF01386 Ribosomal L25p family TRD_RS05390 PF07690 Major Facilitator Superfamily TRD_RS05420 PF01593 Flavin containing amine oxidoreductase TRD_RS05425 PF02401 LytB protein TRD_RS05430 PF01565 FAD binding domain TRD_RS05430 PF13183 4Fe-4S dicluster domain TRD_RS05430 PF02913 FAD linked oxidases, C-terminal domain TRD_RS05440 PF00308 Bacterial dnaA protein TRD_RS05440 PF08299 Bacterial dnaA protein helix-turn-helix TRD_RS05440 PF11638 DnaA N-terminal domain TRD_RS05450 PF07690 Major Facilitator Superfamily TRD_RS05460 PF00581 Rhodanese-like domain TRD_RS05465 PF01592 NifU-like N terminal domain TRD_RS05480 PF02811 PHP domain TRD_RS05485 PF01784 NIF3 (NGG1p interacting factor 3) TRD_RS05490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TRD_RS05490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TRD_RS05490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TRD_RS05490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TRD_RS05510 PF14031 Putative serine dehydratase domain TRD_RS05510 PF01168 Alanine racemase, N-terminal domain TRD_RS05515 PF00551 Formyl transferase TRD_RS05520 PF00117 Glutamine amidotransferase class-I TRD_RS05520 PF00958 GMP synthase C terminal domain TRD_RS05520 PF02540 NAD synthase TRD_RS05525 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TRD_RS05525 PF02843 Phosphoribosylglycinamide synthetase, C domain TRD_RS05525 PF02844 Phosphoribosylglycinamide synthetase, N domain TRD_RS05530 PF00196 Bacterial regulatory proteins, luxR family TRD_RS05530 PF00072 Response regulator receiver domain TRD_RS05535 PF00293 NUDIX domain TRD_RS05545 PF01979 Amidohydrolase family TRD_RS05545 PF13382 Adenine deaminase C-terminal domain TRD_RS05555 PF13411 MerR HTH family regulatory protein TRD_RS05560 PF03437 BtpA family TRD_RS05565 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TRD_RS05565 PF01368 DHH family TRD_RS05565 PF17768 RecJ OB domain TRD_RS05565 PF02272 DHHA1 domain TRD_RS05570 PF18357 Diphteria toxin repressor SH3 domain TRD_RS05570 PF02742 Iron dependent repressor, metal binding and dimerisation domain TRD_RS05570 PF01325 Iron dependent repressor, N-terminal DNA binding domain TRD_RS05585 PF00348 Polyprenyl synthetase TRD_RS05590 PF04298 Putative neutral zinc metallopeptidase TRD_RS05600 PF10431 C-terminal, D2-small domain, of ClpB protein TRD_RS05600 PF06689 ClpX C4-type zinc finger TRD_RS05600 PF07724 AAA domain (Cdc48 subfamily) TRD_RS05605 PF00574 Clp protease TRD_RS05610 PF05697 Bacterial trigger factor protein (TF) TRD_RS05610 PF05698 Bacterial trigger factor protein (TF) C-terminus TRD_RS05625 PF01799 [2Fe-2S] binding domain TRD_RS05625 PF00111 2Fe-2S iron-sulfur cluster binding domain TRD_RS05630 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TRD_RS05630 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TRD_RS05635 PF03450 CO dehydrogenase flavoprotein C-terminal domain TRD_RS05635 PF00941 FAD binding domain in molybdopterin dehydrogenase TRD_RS05655 PF13478 XdhC Rossmann domain TRD_RS05655 PF02625 XdhC and CoxI family TRD_RS05660 PF00132 Bacterial transferase hexapeptide (six repeats) TRD_RS05660 PF12804 MobA-like NTP transferase domain TRD_RS05665 PF00293 NUDIX domain TRD_RS05670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TRD_RS05670 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TRD_RS05680 PF01578 Cytochrome C assembly protein TRD_RS05690 PF00005 ABC transporter TRD_RS05700 PF03918 Cytochrome C biogenesis protein TRD_RS05705 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TRD_RS05705 PF01578 Cytochrome C assembly protein TRD_RS05710 PF03100 CcmE TRD_RS05720 PF00578 AhpC/TSA family TRD_RS05725 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TRD_RS05730 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TRD_RS05730 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TRD_RS05735 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRD_RS05735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRD_RS05740 PF00231 ATP synthase TRD_RS05745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TRD_RS05745 PF02874 ATP synthase alpha/beta family, beta-barrel domain TRD_RS05745 PF00306 ATP synthase alpha/beta chain, C terminal domain TRD_RS05750 PF00213 ATP synthase delta (OSCP) subunit TRD_RS05755 PF00430 ATP synthase B/B' CF(0) TRD_RS05760 PF00137 ATP synthase subunit C TRD_RS05765 PF00119 ATP synthase A chain TRD_RS05770 PF06418 CTP synthase N-terminus TRD_RS05770 PF00117 Glutamine amidotransferase class-I TRD_RS05780 PF02631 RecX family TRD_RS05790 PF13603 Leucyl-tRNA synthetase, Domain 2 TRD_RS05790 PF09334 tRNA synthetases class I (M) TRD_RS05790 PF00133 tRNA synthetases class I (I, L, M and V) TRD_RS05790 PF08264 Anticodon-binding domain of tRNA TRD_RS05800 PF18693 TRAM domain TRD_RS05800 PF00919 Uncharacterized protein family UPF0004 TRD_RS05800 PF04055 Radical SAM superfamily TRD_RS05825 PF01084 Ribosomal protein S18 TRD_RS05830 PF00436 Single-strand binding protein family TRD_RS05835 PF01250 Ribosomal protein S6 TRD_RS05845 PF00288 GHMP kinases N terminal domain TRD_RS05845 PF08544 GHMP kinases C terminal TRD_RS05850 PF00291 Pyridoxal-phosphate dependent enzyme TRD_RS05855 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS05855 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS05860 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS05865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS05880 PF00534 Glycosyl transferases group 1 TRD_RS05880 PF08323 Starch synthase catalytic domain TRD_RS05885 PF00483 Nucleotidyl transferase TRD_RS05885 PF00132 Bacterial transferase hexapeptide (six repeats) TRD_RS05890 PF01039 Carboxyl transferase domain TRD_RS05890 PF17848 Acetyl-coA carboxylase zinc finger domain TRD_RS05895 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TRD_RS05900 PF00011 Hsp20/alpha crystallin family TRD_RS05905 PF00571 CBS domain TRD_RS05905 PF02163 Peptidase family M50 TRD_RS05910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TRD_RS05910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TRD_RS05915 PF03979 Sigma-70 factor, region 1.1 TRD_RS05915 PF04545 Sigma-70, region 4 TRD_RS05915 PF04542 Sigma-70 region 2 TRD_RS05915 PF04539 Sigma-70 region 3 TRD_RS05915 PF00140 Sigma-70 factor, region 1.2 TRD_RS05930 PF16200 C-terminal region of band_7 TRD_RS05930 PF01145 SPFH domain / Band 7 family TRD_RS05935 PF01343 Peptidase family S49 TRD_RS05940 PF03618 Kinase/pyrophosphorylase TRD_RS05955 PF00072 Response regulator receiver domain TRD_RS05955 PF00486 Transcriptional regulatory protein, C terminal TRD_RS05970 PF02780 Transketolase, C-terminal domain TRD_RS05970 PF02779 Transketolase, pyrimidine binding domain TRD_RS05970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TRD_RS05975 PF02527 rRNA small subunit methyltransferase G TRD_RS05980 PF14759 Reductase C-terminal TRD_RS05980 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRD_RS05990 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS05995 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS05995 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS06000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS06010 PF00891 O-methyltransferase domain TRD_RS06015 PF13344 Haloacid dehalogenase-like hydrolase TRD_RS06020 PF00535 Glycosyl transferase family 2 TRD_RS06035 PF00994 Probable molybdopterin binding domain TRD_RS06035 PF18146 Damage-inducible protein CinA KH domain TRD_RS06035 PF02464 Competence-damaged protein TRD_RS06045 PF02130 Uncharacterized protein family UPF0054 TRD_RS06050 PF07698 7TM receptor with intracellular HD hydrolase TRD_RS06050 PF07697 7TM-HD extracellular TRD_RS06050 PF01966 HD domain TRD_RS06055 PF09424 Yqey-like protein TRD_RS06070 PF08241 Methyltransferase domain TRD_RS06095 PF00118 TCP-1/cpn60 chaperonin family TRD_RS06100 PF00166 Chaperonin 10 Kd subunit TRD_RS06105 PF00155 Aminotransferase class I and II TRD_RS06120 PF02769 AIR synthase related protein, C-terminal domain TRD_RS06120 PF00586 AIR synthase related protein, N-terminal domain TRD_RS06125 PF00398 Ribosomal RNA adenine dimethylase TRD_RS06140 PF00899 ThiF family TRD_RS06145 PF14464 Prokaryotic homologs of the JAB domain TRD_RS06150 PF02597 ThiS family TRD_RS06155 PF00291 Pyridoxal-phosphate dependent enzyme TRD_RS06160 PF00069 Protein kinase domain TRD_RS06160 PF03793 PASTA domain TRD_RS06190 PF04199 Putative cyclase TRD_RS06205 PF01047 MarR family TRD_RS06215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TRD_RS06215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TRD_RS06220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TRD_RS06225 PF00809 Pterin binding enzyme TRD_RS06230 PF02152 Dihydroneopterin aldolase TRD_RS06245 PF02899 Phage integrase, N-terminal SAM-like domain TRD_RS06245 PF00589 Phage integrase family TRD_RS06255 PF01925 Sulfite exporter TauE/SafE TRD_RS06270 PF01925 Sulfite exporter TauE/SafE TRD_RS06295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TRD_RS06295 PF02770 Acyl-CoA dehydrogenase, middle domain TRD_RS06295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TRD_RS06300 PF01661 Macro domain TRD_RS06305 PF00180 Isocitrate/isopropylmalate dehydrogenase TRD_RS06310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TRD_RS06310 PF13378 Enolase C-terminal domain-like TRD_RS06340 PF01717 Cobalamin-independent synthase, Catalytic domain TRD_RS06340 PF08267 Cobalamin-independent synthase, N-terminal domain TRD_RS06355 PF05167 Uncharacterised ACR (DUF711) TRD_RS06365 PF02585 GlcNAc-PI de-N-acetylase TRD_RS06370 PF00296 Luciferase-like monooxygenase TRD_RS06390 PF04264 YceI-like domain TRD_RS06395 PF01638 HxlR-like helix-turn-helix TRD_RS06400 PF01497 Periplasmic binding protein TRD_RS06410 PF02515 CoA-transferase family III TRD_RS06415 PF00072 Response regulator receiver domain TRD_RS06415 PF00196 Bacterial regulatory proteins, luxR family TRD_RS06425 PF03099 Biotin/lipoate A/B protein ligase family TRD_RS06425 PF12706 Beta-lactamase superfamily domain TRD_RS06440 PF00875 DNA photolyase TRD_RS06440 PF03441 FAD binding domain of DNA photolyase TRD_RS06445 PF01593 Flavin containing amine oxidoreductase TRD_RS06450 PF03717 Penicillin-binding Protein dimerisation domain TRD_RS06450 PF00905 Penicillin binding protein transpeptidase domain TRD_RS06455 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TRD_RS06455 PF14572 Phosphoribosyl synthetase-associated domain TRD_RS06460 PF00035 Double-stranded RNA binding motif TRD_RS06460 PF14622 Ribonuclease-III-like TRD_RS06470 PF02641 Uncharacterized ACR, COG1993 TRD_RS06475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TRD_RS06480 PF02416 mttA/Hcf106 family TRD_RS06490 PF01593 Flavin containing amine oxidoreductase TRD_RS06495 PF00762 Ferrochelatase TRD_RS06500 PF01208 Uroporphyrinogen decarboxylase (URO-D) TRD_RS06505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRD_RS06505 PF08447 PAS fold TRD_RS06505 PF13426 PAS domain TRD_RS06515 PF01557 Fumarylacetoacetate (FAA) hydrolase family TRD_RS06520 PF01557 Fumarylacetoacetate (FAA) hydrolase family TRD_RS06525 PF01361 Tautomerase enzyme TRD_RS06530 PF00561 alpha/beta hydrolase fold TRD_RS06535 PF01613 Flavin reductase like domain TRD_RS06540 PF07836 DmpG-like communication domain TRD_RS06540 PF00682 HMGL-like TRD_RS06545 PF01118 Semialdehyde dehydrogenase, NAD binding domain TRD_RS06545 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TRD_RS06550 PF01614 Bacterial transcriptional regulator TRD_RS06550 PF09339 IclR helix-turn-helix domain TRD_RS06555 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal TRD_RS06555 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal TRD_RS06560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TRD_RS06570 PF02653 Branched-chain amino acid transport system / permease component TRD_RS06580 PF00005 ABC transporter TRD_RS06580 PF12399 Branched-chain amino acid ATP-binding cassette transporter TRD_RS06585 PF00005 ABC transporter TRD_RS06600 PF02653 Branched-chain amino acid transport system / permease component TRD_RS06605 PF00005 ABC transporter TRD_RS06605 PF12399 Branched-chain amino acid ATP-binding cassette transporter TRD_RS06610 PF00005 ABC transporter TRD_RS06620 PF00268 Ribonucleotide reductase, small chain TRD_RS06625 PF00317 Ribonucleotide reductase, all-alpha domain TRD_RS06625 PF03477 ATP cone domain TRD_RS06625 PF02867 Ribonucleotide reductase, barrel domain TRD_RS06645 PF00403 Heavy-metal-associated domain TRD_RS06650 PF02583 Metal-sensitive transcriptional repressor TRD_RS06665 PF05231 MASE1 TRD_RS06665 PF00563 EAL domain TRD_RS06670 PF00202 Aminotransferase class-III TRD_RS06675 PF00037 4Fe-4S binding domain TRD_RS06685 PF01197 Ribosomal protein L31 TRD_RS06690 PF01016 Ribosomal L27 protein TRD_RS06695 PF00829 Ribosomal prokaryotic L21 protein TRD_RS06710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TRD_RS06710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TRD_RS06725 PF07690 Major Facilitator Superfamily TRD_RS06735 PF01098 Cell cycle protein TRD_RS06740 PF04055 Radical SAM superfamily TRD_RS06740 PF06969 HemN C-terminal domain TRD_RS06745 PF13614 AAA domain TRD_RS06750 PF00478 IMP dehydrogenase / GMP reductase domain TRD_RS06750 PF00571 CBS domain TRD_RS06805 PF01266 FAD dependent oxidoreductase TRD_RS06805 PF08669 Glycine cleavage T-protein C-terminal barrel domain TRD_RS06805 PF16350 FAD dependent oxidoreductase central domain TRD_RS06805 PF01571 Aminomethyltransferase folate-binding domain TRD_RS06810 PF00226 DnaJ domain TRD_RS06810 PF01556 DnaJ C terminal domain TRD_RS06810 PF00684 DnaJ central domain TRD_RS06825 PF00202 Aminotransferase class-III TRD_RS06830 PF07687 Peptidase dimerisation domain TRD_RS06830 PF01546 Peptidase family M20/M25/M40 TRD_RS06840 PF01113 Dihydrodipicolinate reductase, N-terminus TRD_RS06855 PF13419 Haloacid dehalogenase-like hydrolase TRD_RS06870 PF00171 Aldehyde dehydrogenase family TRD_RS06875 PF10415 Fumarase C C-terminus TRD_RS06875 PF00206 Lyase TRD_RS06880 PF12838 4Fe-4S dicluster domain TRD_RS06885 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TRD_RS06885 PF01568 Molydopterin dinucleotide binding domain TRD_RS06885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TRD_RS06885 PF13237 4Fe-4S dicluster domain TRD_RS06885 PF00384 Molybdopterin oxidoreductase TRD_RS06890 PF02637 GatB domain TRD_RS06890 PF02934 GatB/GatE catalytic domain TRD_RS06895 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TRD_RS06895 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TRD_RS06905 PF02254 TrkA-N domain TRD_RS06905 PF02080 TrkA-C domain TRD_RS06910 PF02080 TrkA-C domain TRD_RS06910 PF02254 TrkA-N domain TRD_RS06930 PF01022 Bacterial regulatory protein, arsR family TRD_RS06940 PF02683 Cytochrome C biogenesis protein transmembrane region TRD_RS06950 PF07690 Major Facilitator Superfamily TRD_RS06965 PF00561 alpha/beta hydrolase fold TRD_RS06970 PF00676 Dehydrogenase E1 component TRD_RS06975 PF02780 Transketolase, C-terminal domain TRD_RS06975 PF02779 Transketolase, pyrimidine binding domain TRD_RS06985 PF02308 MgtC family TRD_RS07020 PF00005 ABC transporter TRD_RS07030 PF16123 Hydroxyacylglutathione hydrolase C-terminus TRD_RS07030 PF00753 Metallo-beta-lactamase superfamily TRD_RS07035 PF00675 Insulinase (Peptidase family M16) TRD_RS07035 PF05193 Peptidase M16 inactive domain TRD_RS07040 PF00994 Probable molybdopterin binding domain TRD_RS07040 PF18146 Damage-inducible protein CinA KH domain TRD_RS07040 PF02464 Competence-damaged protein TRD_RS07045 PF07690 Major Facilitator Superfamily TRD_RS07060 PF02245 Methylpurine-DNA glycosylase (MPG) TRD_RS07065 PF00133 tRNA synthetases class I (I, L, M and V) TRD_RS07065 PF08264 Anticodon-binding domain of tRNA TRD_RS07065 PF10458 Valyl tRNA synthetase tRNA binding arm TRD_RS07080 PF00202 Aminotransferase class-III TRD_RS07085 PF00696 Amino acid kinase family TRD_RS07090 PF01209 ubiE/COQ5 methyltransferase family TRD_RS07095 PF01118 Semialdehyde dehydrogenase, NAD binding domain TRD_RS07095 PF02774 Semialdehyde dehydrogenase, dimerisation domain TRD_RS07100 PF08443 RimK-like ATP-grasp domain TRD_RS07105 PF01546 Peptidase family M20/M25/M40 TRD_RS07120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS07125 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS07130 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS07130 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS07140 PF00403 Heavy-metal-associated domain TRD_RS07145 PF01022 Bacterial regulatory protein, arsR family TRD_RS07150 PF08264 Anticodon-binding domain of tRNA TRD_RS07150 PF09334 tRNA synthetases class I (M) TRD_RS07155 PF01464 Transglycosylase SLT domain TRD_RS07155 PF00497 Bacterial extracellular solute-binding proteins, family 3 TRD_RS07175 PF00535 Glycosyl transferase family 2 TRD_RS07185 PF07690 Major Facilitator Superfamily TRD_RS07210 PF03808 Glycosyl transferase WecB/TagA/CpsF family TRD_RS07220 PF01467 Cytidylyltransferase-like TRD_RS07220 PF00294 pfkB family carbohydrate kinase TRD_RS07225 PF00664 ABC transporter transmembrane region TRD_RS07225 PF00005 ABC transporter TRD_RS07240 PF00850 Histone deacetylase domain TRD_RS07250 PF02151 UvrB/uvrC motif TRD_RS07250 PF17757 UvrB interaction domain TRD_RS07250 PF04851 Type III restriction enzyme, res subunit TRD_RS07250 PF00271 Helicase conserved C-terminal domain TRD_RS07250 PF12344 Ultra-violet resistance protein B TRD_RS07260 PF00072 Response regulator receiver domain TRD_RS07260 PF00196 Bacterial regulatory proteins, luxR family TRD_RS07265 PF07730 Histidine kinase TRD_RS07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS07265 PF05384 Sensor protein DegS TRD_RS07270 PF01521 Iron-sulphur cluster biosynthesis TRD_RS07285 PF00120 Glutamine synthetase, catalytic domain TRD_RS07285 PF03951 Glutamine synthetase, beta-Grasp domain TRD_RS07290 PF03951 Glutamine synthetase, beta-Grasp domain TRD_RS07290 PF00120 Glutamine synthetase, catalytic domain TRD_RS07305 PF01642 Methylmalonyl-CoA mutase TRD_RS07305 PF02310 B12 binding domain TRD_RS07310 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS07310 PF05362 Lon protease (S16) C-terminal proteolytic domain TRD_RS07310 PF02190 ATP-dependent protease La (LON) substrate-binding domain TRD_RS07335 PF00266 Aminotransferase class-V TRD_RS07340 PF00899 ThiF family TRD_RS07350 PF02153 Prephenate dehydrogenase TRD_RS07360 PF00171 Aldehyde dehydrogenase family TRD_RS07365 PF00296 Luciferase-like monooxygenase TRD_RS07395 PF01276 Orn/Lys/Arg decarboxylase, major domain TRD_RS07395 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain TRD_RS07425 PF00082 Subtilase family TRD_RS07475 PF00512 His Kinase A (phospho-acceptor) domain TRD_RS07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS07475 PF00672 HAMP domain TRD_RS07475 PF13426 PAS domain TRD_RS07480 PF00486 Transcriptional regulatory protein, C terminal TRD_RS07480 PF00072 Response regulator receiver domain TRD_RS07485 PF17782 DprA winged helix domain TRD_RS07485 PF02481 DNA recombination-mediator protein A TRD_RS07490 PF00483 Nucleotidyl transferase TRD_RS07490 PF01050 Mannose-6-phosphate isomerase TRD_RS07495 PF01751 Toprim domain TRD_RS07495 PF01131 DNA topoisomerase TRD_RS07495 PF01396 Topoisomerase DNA binding C4 zinc finger TRD_RS07500 PF00227 Proteasome subunit TRD_RS07505 PF10431 C-terminal, D2-small domain, of ClpB protein TRD_RS07505 PF07724 AAA domain (Cdc48 subfamily) TRD_RS07505 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS07510 PF00535 Glycosyl transferase family 2 TRD_RS07515 PF00480 ROK family TRD_RS07520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS07525 PF01063 Amino-transferase class IV TRD_RS07530 PF00202 Aminotransferase class-III TRD_RS07535 PF00291 Pyridoxal-phosphate dependent enzyme TRD_RS07540 PF04851 Type III restriction enzyme, res subunit TRD_RS07540 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TRD_RS07540 PF18074 Primosomal protein N C-terminal domain TRD_RS07540 PF17764 3′ DNA-binding domain (3′BD) TRD_RS07540 PF00271 Helicase conserved C-terminal domain TRD_RS07545 PF01327 Polypeptide deformylase TRD_RS07550 PF00625 Guanylate kinase TRD_RS07555 PF05670 NFACT protein RNA binding domain TRD_RS07560 PF00902 Sec-independent protein translocase protein (TatC) TRD_RS07565 PF00550 Phosphopantetheine attachment site TRD_RS07570 PF01029 NusB family TRD_RS07575 PF00289 Biotin carboxylase, N-terminal domain TRD_RS07575 PF02785 Biotin carboxylase C-terminal domain TRD_RS07575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TRD_RS07585 PF00698 Acyl transferase domain TRD_RS07590 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TRD_RS07590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TRD_RS07595 PF01783 Ribosomal L32p protein family TRD_RS07605 PF03328 HpcH/HpaI aldolase/citrate lyase family TRD_RS07610 PF01063 Amino-transferase class IV TRD_RS07615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS07620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRD_RS07620 PF00005 ABC transporter TRD_RS07625 PF00005 ABC transporter TRD_RS07625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRD_RS07630 PF02163 Peptidase family M50 TRD_RS07635 PF02616 Segregation and condensation protein ScpA TRD_RS07640 PF04079 Segregation and condensation complex subunit ScpB TRD_RS07645 PF00266 Aminotransferase class-V TRD_RS07650 PF02082 Transcriptional regulator TRD_RS07655 PF00472 RF-1 domain TRD_RS07655 PF03462 PCRF domain TRD_RS07665 PF01628 HrcA protein C terminal domain TRD_RS07665 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TRD_RS07670 PF01025 GrpE TRD_RS07675 PF00012 Hsp70 protein TRD_RS07750 PF13556 PucR C-terminal helix-turn-helix domain TRD_RS07750 PF17853 GGDEF-like domain TRD_RS07750 PF05651 Putative sugar diacid recognition TRD_RS07780 PF02401 LytB protein TRD_RS07785 PF13419 Haloacid dehalogenase-like hydrolase TRD_RS07795 PF04321 RmlD substrate binding domain TRD_RS07800 PF01261 Xylose isomerase-like TIM barrel TRD_RS07805 PF07730 Histidine kinase TRD_RS07805 PF05384 Sensor protein DegS TRD_RS07805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS07810 PF00196 Bacterial regulatory proteins, luxR family TRD_RS07810 PF00072 Response regulator receiver domain TRD_RS07815 PF01119 DNA mismatch repair protein, C-terminal domain TRD_RS07815 PF08676 MutL C terminal dimerisation domain TRD_RS07825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS07830 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS07835 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS07835 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS07840 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS07845 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS07855 PF00118 TCP-1/cpn60 chaperonin family TRD_RS07865 PF14489 QueF-like protein TRD_RS07870 PF08241 Methyltransferase domain TRD_RS07870 PF00975 Thioesterase domain TRD_RS07870 PF00550 Phosphopantetheine attachment site TRD_RS07870 PF13193 AMP-binding enzyme C-terminal domain TRD_RS07870 PF00391 PEP-utilising enzyme, mobile domain TRD_RS07870 PF00501 AMP-binding enzyme TRD_RS07870 PF00668 Condensation domain TRD_RS07875 PF00364 Biotin-requiring enzyme TRD_RS07880 PF00364 Biotin-requiring enzyme TRD_RS07880 PF02436 Conserved carboxylase domain TRD_RS07880 PF00682 HMGL-like TRD_RS07885 PF13419 Haloacid dehalogenase-like hydrolase TRD_RS07890 PF14535 AMP-binding enzyme C-terminal domain TRD_RS07890 PF00501 AMP-binding enzyme TRD_RS07900 PF07859 alpha/beta hydrolase fold TRD_RS07915 PF00682 HMGL-like TRD_RS07915 PF08502 LeuA allosteric (dimerisation) domain TRD_RS07920 PF00330 Aconitase family (aconitate hydratase) TRD_RS07925 PF00694 Aconitase C-terminal domain TRD_RS07930 PF00180 Isocitrate/isopropylmalate dehydrogenase TRD_RS07940 PF00704 Glycosyl hydrolases family 18 TRD_RS07940 PF01476 LysM domain TRD_RS07945 PF01220 Dehydroquinase class II TRD_RS07950 PF01321 Creatinase/Prolidase N-terminal domain TRD_RS07950 PF00557 Metallopeptidase family M24 TRD_RS07955 PF01132 Elongation factor P (EF-P) OB domain TRD_RS07955 PF09285 Elongation factor P, C-terminal TRD_RS07955 PF08207 Elongation factor P (EF-P) KOW-like domain TRD_RS07960 PF00364 Biotin-requiring enzyme TRD_RS07965 PF13742 OB-fold nucleic acid binding domain TRD_RS07965 PF02601 Exonuclease VII, large subunit TRD_RS08000 PF02391 MoaE protein TRD_RS08005 PF00994 Probable molybdopterin binding domain TRD_RS08005 PF03453 MoeA N-terminal region (domain I and II) TRD_RS08005 PF03454 MoeA C-terminal region (domain IV) TRD_RS08010 PF02824 TGS domain TRD_RS08010 PF13291 ACT domain TRD_RS08010 PF04607 Region found in RelA / SpoT proteins TRD_RS08015 PF09269 Domain of unknown function (DUF1967) TRD_RS08015 PF01926 50S ribosome-binding GTPase TRD_RS08015 PF01018 GTP1/OBG TRD_RS08025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TRD_RS08025 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TRD_RS08030 PF16326 ABC transporter C-terminal domain TRD_RS08030 PF00005 ABC transporter TRD_RS08030 PF12848 ABC transporter TRD_RS08035 PF01121 Dephospho-CoA kinase TRD_RS08045 PF00571 CBS domain TRD_RS08045 PF02163 Peptidase family M50 TRD_RS08065 PF02580 D-Tyr-tRNA(Tyr) deacylase TRD_RS08070 PF02542 YgbB family TRD_RS08075 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TRD_RS08080 PF01938 TRAM domain TRD_RS08085 PF02811 PHP domain TRD_RS08090 PF04232 Stage V sporulation protein S (SpoVS) TRD_RS08095 PF00224 Pyruvate kinase, barrel domain TRD_RS08095 PF02887 Pyruvate kinase, alpha/beta domain TRD_RS08110 PF00676 Dehydrogenase E1 component TRD_RS08115 PF00364 Biotin-requiring enzyme TRD_RS08115 PF02779 Transketolase, pyrimidine binding domain TRD_RS08115 PF02780 Transketolase, C-terminal domain TRD_RS08120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TRD_RS08120 PF00364 Biotin-requiring enzyme TRD_RS08120 PF02817 e3 binding domain TRD_RS08145 PF17760 UvrA interaction domain TRD_RS08145 PF17755 UvrA DNA-binding domain TRD_RS08155 PF02403 Seryl-tRNA synthetase N-terminal domain TRD_RS08155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRD_RS08165 PF05853 beta-keto acid cleavage enzyme TRD_RS08175 PF06470 SMC proteins Flexible Hinge Domain TRD_RS08175 PF02463 RecF/RecN/SMC N terminal domain TRD_RS08180 PF16363 GDP-mannose 4,6 dehydratase TRD_RS08205 PF04542 Sigma-70 region 2 TRD_RS08205 PF08281 Sigma-70, region 4 TRD_RS08210 PF00196 Bacterial regulatory proteins, luxR family TRD_RS08210 PF00072 Response regulator receiver domain TRD_RS08220 PF01425 Amidase TRD_RS08225 PF02686 Glu-tRNAGln amidotransferase C subunit TRD_RS08230 PF00232 Glycosyl hydrolase family 1 TRD_RS08235 PF12169 DNA polymerase III subunits gamma and tau domain III TRD_RS08240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TRD_RS08245 PF02515 CoA-transferase family III TRD_RS08250 PF00378 Enoyl-CoA hydratase/isomerase TRD_RS08260 PF03358 NADPH-dependent FMN reductase TRD_RS08275 PF00334 Nucleoside diphosphate kinase TRD_RS08290 PF01266 FAD dependent oxidoreductase TRD_RS08300 PF00534 Glycosyl transferases group 1 TRD_RS08300 PF13439 Glycosyltransferase Family 4 TRD_RS08305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TRD_RS08305 PF01842 ACT domain TRD_RS08305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TRD_RS08310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TRD_RS08315 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TRD_RS08320 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TRD_RS08325 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TRD_RS08330 PF00146 NADH dehydrogenase TRD_RS08335 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TRD_RS08340 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TRD_RS08345 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus TRD_RS08345 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TRD_RS08345 PF00361 Proton-conducting membrane transporter TRD_RS08350 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TRD_RS08350 PF00361 Proton-conducting membrane transporter TRD_RS08355 PF00361 Proton-conducting membrane transporter TRD_RS08365 PF10672 S-adenosylmethionine-dependent methyltransferase TRD_RS08365 PF17785 PUA-like domain TRD_RS08370 PF00392 Bacterial regulatory proteins, gntR family TRD_RS08370 PF00155 Aminotransferase class I and II TRD_RS08375 PF02272 DHHA1 domain TRD_RS08375 PF01411 tRNA synthetases class II (A) TRD_RS08375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TRD_RS08380 PF01738 Dienelactone hydrolase family TRD_RS08380 PF00156 Phosphoribosyl transferase domain TRD_RS08385 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TRD_RS08385 PF00753 Metallo-beta-lactamase superfamily TRD_RS08385 PF17770 Ribonuclease J C-terminal domain TRD_RS08400 PF06508 Queuosine biosynthesis protein QueC TRD_RS08405 PF01926 50S ribosome-binding GTPase TRD_RS08405 PF06071 Protein of unknown function (DUF933) TRD_RS08420 PF02629 CoA binding domain TRD_RS08420 PF00549 CoA-ligase TRD_RS08425 PF00549 CoA-ligase TRD_RS08425 PF08442 ATP-grasp domain TRD_RS08430 PF00890 FAD binding domain TRD_RS08435 PF00676 Dehydrogenase E1 component TRD_RS08440 PF02779 Transketolase, pyrimidine binding domain TRD_RS08440 PF02780 Transketolase, C-terminal domain TRD_RS08450 PF02615 Malate/L-lactate dehydrogenase TRD_RS08470 PF02867 Ribonucleotide reductase, barrel domain TRD_RS08470 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TRD_RS08475 PF00196 Bacterial regulatory proteins, luxR family TRD_RS08475 PF00072 Response regulator receiver domain TRD_RS08480 PF05384 Sensor protein DegS TRD_RS08480 PF07730 Histidine kinase TRD_RS08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS08485 PF02881 SRP54-type protein, helical bundle domain TRD_RS08485 PF00448 SRP54-type protein, GTPase domain TRD_RS08485 PF02978 Signal peptide binding domain TRD_RS08490 PF00448 SRP54-type protein, GTPase domain TRD_RS08490 PF02881 SRP54-type protein, helical bundle domain TRD_RS08495 PF04002 RadC-like JAB domain TRD_RS08520 PF00171 Aldehyde dehydrogenase family TRD_RS08530 PF01895 PhoU domain TRD_RS08535 PF00005 ABC transporter TRD_RS08540 PF00005 ABC transporter TRD_RS08545 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS08550 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS08555 PF12849 PBP superfamily domain TRD_RS08560 PF00486 Transcriptional regulatory protein, C terminal TRD_RS08560 PF00072 Response regulator receiver domain TRD_RS08575 PF13302 Acetyltransferase (GNAT) domain TRD_RS08590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS08595 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS08595 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS08600 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS08605 PF01467 Cytidylyltransferase-like TRD_RS08605 PF00294 pfkB family carbohydrate kinase TRD_RS08610 PF03023 Lipid II flippase MurJ TRD_RS08615 PF07969 Amidohydrolase family TRD_RS08625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TRD_RS08625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TRD_RS08630 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TRD_RS08630 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TRD_RS08640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TRD_RS08645 PF05343 M42 glutamyl aminopeptidase TRD_RS08650 PF01842 ACT domain TRD_RS08650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TRD_RS08650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TRD_RS08655 PF02325 YGGT family TRD_RS08675 PF06107 Bacterial protein of unknown function (DUF951) TRD_RS08680 PF07690 Major Facilitator Superfamily TRD_RS08690 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS08690 PF12911 N-terminal TM domain of oligopeptide transport permease C TRD_RS08695 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS08700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS08705 PF01300 Telomere recombination TRD_RS08705 PF17788 HypF Kae1-like domain TRD_RS08705 PF00708 Acylphosphatase TRD_RS08705 PF07503 HypF finger TRD_RS08715 PF13580 SIS domain TRD_RS08720 PF02769 AIR synthase related protein, C-terminal domain TRD_RS08720 PF00586 AIR synthase related protein, N-terminal domain TRD_RS08725 PF01924 Hydrogenase formation hypA family TRD_RS08735 PF01455 HupF/HypC family TRD_RS08740 PF02492 CobW/HypB/UreG, nucleotide-binding domain TRD_RS08775 PF00374 Nickel-dependent hydrogenase TRD_RS08780 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TRD_RS08780 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TRD_RS08785 PF12072 Domain of unknown function (DUF3552) TRD_RS08785 PF01966 HD domain TRD_RS08785 PF00013 KH domain TRD_RS08795 PF01061 ABC-2 type transporter TRD_RS08795 PF00005 ABC transporter TRD_RS08795 PF00498 FHA domain TRD_RS08810 PF01212 Beta-eliminating lyase TRD_RS08825 PF01329 Pterin 4 alpha carbinolamine dehydratase TRD_RS08835 PF00749 tRNA synthetases class I (E and Q), catalytic domain TRD_RS08850 PF13439 Glycosyltransferase Family 4 TRD_RS08855 PF00291 Pyridoxal-phosphate dependent enzyme TRD_RS08860 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TRD_RS08860 PF06827 Zinc finger found in FPG and IleRS TRD_RS08860 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TRD_RS08865 PF01230 HIT domain TRD_RS08885 PF02585 GlcNAc-PI de-N-acetylase TRD_RS08895 PF02416 mttA/Hcf106 family TRD_RS08905 PF00106 short chain dehydrogenase TRD_RS08920 PF01406 tRNA synthetases class I (C) catalytic domain TRD_RS08920 PF09190 DALR domain TRD_RS08930 PF07992 Pyridine nucleotide-disulphide oxidoreductase TRD_RS08985 PF03776 Septum formation topological specificity factor MinE TRD_RS08990 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TRD_RS08995 PF03775 Septum formation inhibitor MinC, C-terminal domain TRD_RS09000 PF00905 Penicillin binding protein transpeptidase domain TRD_RS09000 PF03717 Penicillin-binding Protein dimerisation domain TRD_RS09015 PF00128 Alpha amylase, catalytic domain TRD_RS09015 PF11896 Domain of unknown function (DUF3416) TRD_RS09020 PF00128 Alpha amylase, catalytic domain TRD_RS09020 PF16657 Maltogenic Amylase, C-terminal domain TRD_RS09025 PF02446 4-alpha-glucanotransferase TRD_RS09030 PF02806 Alpha amylase, C-terminal all-beta domain TRD_RS09030 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TRD_RS09030 PF00128 Alpha amylase, catalytic domain TRD_RS09040 PF07685 CobB/CobQ-like glutamine amidotransferase domain TRD_RS09045 PF08245 Mur ligase middle domain TRD_RS09045 PF08353 Domain of unknown function (DUF1727) TRD_RS09065 PF00781 Diacylglycerol kinase catalytic domain TRD_RS09075 PF00107 Zinc-binding dehydrogenase TRD_RS09075 PF08240 Alcohol dehydrogenase GroES-like domain TRD_RS09080 PF07969 Amidohydrolase family TRD_RS09085 PF03737 Aldolase/RraA TRD_RS09090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TRD_RS09090 PF13378 Enolase C-terminal domain-like TRD_RS09105 PF01370 NAD dependent epimerase/dehydratase family TRD_RS09110 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS09115 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS09120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TRD_RS09125 PF00005 ABC transporter TRD_RS09125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRD_RS09130 PF00005 ABC transporter TRD_RS09130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TRD_RS09135 PF13378 Enolase C-terminal domain-like TRD_RS09135 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TRD_RS09140 PF13378 Enolase C-terminal domain-like TRD_RS09140 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TRD_RS09145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TRD_RS09145 PF13378 Enolase C-terminal domain-like TRD_RS09155 PF03734 L,D-transpeptidase catalytic domain TRD_RS09155 PF17964 Bacterial Ig domain TRD_RS09160 PF01476 LysM domain TRD_RS09160 PF01551 Peptidase family M23 TRD_RS09170 PF03772 Competence protein TRD_RS09170 PF13567 Domain of unknown function (DUF4131) TRD_RS09170 PF00753 Metallo-beta-lactamase superfamily TRD_RS09175 PF01066 CDP-alcohol phosphatidyltransferase TRD_RS09180 PF13439 Glycosyltransferase Family 4 TRD_RS09190 PF00905 Penicillin binding protein transpeptidase domain TRD_RS09190 PF00912 Transglycosylase TRD_RS09200 PF01266 FAD dependent oxidoreductase TRD_RS09210 PF12800 4Fe-4S binding domain TRD_RS09210 PF09163 Formate dehydrogenase N, transmembrane TRD_RS09210 PF13247 4Fe-4S dicluster domain TRD_RS09215 PF01568 Molydopterin dinucleotide binding domain TRD_RS09215 PF00384 Molybdopterin oxidoreductase TRD_RS09215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TRD_RS09220 PF01568 Molydopterin dinucleotide binding domain TRD_RS09220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TRD_RS09220 PF00384 Molybdopterin oxidoreductase TRD_RS09230 PF00582 Universal stress protein family TRD_RS09265 PF00924 Mechanosensitive ion channel TRD_RS09335 PF00588 SpoU rRNA Methylase family TRD_RS09335 PF12105 SpoU, rRNA methylase, C-terminal TRD_RS09415 PF01680 SOR/SNZ family TRD_RS09690 PF00294 pfkB family carbohydrate kinase TRD_RS09750 PF00270 DEAD/DEAH box helicase TRD_RS09750 PF17191 RecG wedge domain TRD_RS09750 PF00271 Helicase conserved C-terminal domain TRD_RS10025 PF13183 4Fe-4S dicluster domain TRD_RS10025 PF02665 Nitrate reductase gamma subunit TRD_RS10025 PF02754 Cysteine-rich domain TRD_RS10195 PF01513 ATP-NAD kinase TRD_RS10285 PF13847 Methyltransferase domain TRD_RS10285 PF01938 TRAM domain TRD_RS10525 PF05343 M42 glutamyl aminopeptidase TRD_RS10640 PF00580 UvrD/REP helicase N-terminal domain TRD_RS10640 PF13361 UvrD-like helicase C-terminal domain TRD_RS10785 PF13307 Helicase C-terminal domain TRD_RS11045 PF00528 Binding-protein-dependent transport system inner membrane component TRD_RS11200 PF12002 MgsA AAA+ ATPase C terminal TRD_RS11200 PF16193 AAA C-terminal domain TRD_RS11200 PF00004 ATPase family associated with various cellular activities (AAA) TRD_RS11305 PF02540 NAD synthase TRD_RS11305 PF00795 Carbon-nitrogen hydrolase TRD_RS11560 PF01209 ubiE/COQ5 methyltransferase family TRD_RS11955 PF03129 Anticodon binding domain TRD_RS11955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TRD_RS11955 PF09180 Prolyl-tRNA synthetase, C-terminal TRD_RS12190 PF00534 Glycosyl transferases group 1 TRD_RS12190 PF13439 Glycosyltransferase Family 4 TRD_RS12335 PF03796 DnaB-like helicase C terminal domain TRD_RS12335 PF00772 DnaB-like helicase N terminal domain TRD_RS12515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRD_RS12515 PF14579 Helix-hairpin-helix motif TRD_RS12515 PF02811 PHP domain TRD_RS12515 PF07733 Bacterial DNA polymerase III alpha NTPase domain TRD_RS12535 PF01725 Ham1 family TRD_RS12540 PF01026 TatD related DNase TRD_RS12565 PF01259 SAICAR synthetase TRD_RS12605 PF02347 Glycine cleavage system P-protein TRD_RS12610 PF02347 Glycine cleavage system P-protein TRD_RS12635 PF03109 ABC1 family TRD_RS12845 PF00205 Thiamine pyrophosphate enzyme, central domain TRD_RS12845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRD_RS12845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TRD_RS13135 PF01039 Carboxyl transferase domain TRD_RS13135 PF17848 Acetyl-coA carboxylase zinc finger domain TRD_RS13135 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TRD_RS13355 PF02875 Mur ligase family, glutamate ligase domain TRD_RS13355 PF08245 Mur ligase middle domain TRD_RS13355 PF01225 Mur ligase family, catalytic domain TRD_RS13385 PF03471 Transporter associated domain TRD_RS13385 PF00571 CBS domain TRD_RS13390 PF08448 PAS fold TRD_RS13390 PF08447 PAS fold TRD_RS13390 PF00990 Diguanylate cyclase, GGDEF domain TRD_RS13390 PF00563 EAL domain TRD_RS13400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TRD_RS13400 PF00672 HAMP domain TRD_RS13425 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TRD_RS13425 PF10996 Beta-Casp domain TRD_RS13425 PF00753 Metallo-beta-lactamase superfamily TRD_RS13465 PF00768 D-alanyl-D-alanine carboxypeptidase TRD_RS13465 PF07943 Penicillin-binding protein 5, C-terminal domain TRD_RS13470 PF00768 D-alanyl-D-alanine carboxypeptidase TRD_RS13470 PF07943 Penicillin-binding protein 5, C-terminal domain TRD_RS13475 PF01476 LysM domain TRD_RS13475 PF05257 CHAP domain TRD_RS13485 PF00293 NUDIX domain TRD_RS13490 PF00768 D-alanyl-D-alanine carboxypeptidase TRD_RS13490 PF07943 Penicillin-binding protein 5, C-terminal domain TRD_RS13495 PF01381 Helix-turn-helix TRD_RS13535 PF09587 Bacterial capsule synthesis protein PGA_cap TRD_RS13540 PF02911 Formyl transferase, C-terminal domain TRD_RS13540 PF00551 Formyl transferase TRD_RS13545 PF01761 3-dehydroquinate synthase TRD_RS13550 PF00366 Ribosomal protein S17 TRD_RS13560 PF00072 Response regulator receiver domain TRD_RS13565 PF02630 SCO1/SenC TRD_RS13570 PF00929 Exonuclease TRD_RS13570 PF02811 PHP domain TRD_RS13570 PF14579 Helix-hairpin-helix motif TRD_RS13570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRD_RS13570 PF07733 Bacterial DNA polymerase III alpha NTPase domain TRD_RS13575 PF03900 Porphobilinogen deaminase, C-terminal domain TRD_RS13575 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TRD_RS13580 PF10128 Glucose-6-phosphate dehydrogenase subunit TRD_RS13580 PF01471 Putative peptidoglycan binding domain TRD_RS13590 PF00440 Bacterial regulatory proteins, tetR family TRD_RS13595 PF00561 alpha/beta hydrolase fold TRD_RS13610 PF10518 TAT (twin-arginine translocation) pathway signal sequence TRD_RS13610 PF00149 Calcineurin-like phosphoesterase TRD_RS13615 PF05698 Bacterial trigger factor protein (TF) C-terminus TRD_RS13620 PF00512 His Kinase A (phospho-acceptor) domain TRD_RS13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRD_RS13620 PF00672 HAMP domain TRD_RS13630 PF00288 GHMP kinases N terminal domain TRD_RS13630 PF08544 GHMP kinases C terminal TRD_RS13635 PF03816 Cell envelope-related transcriptional attenuator domain TRD_RS13645 PF00296 Luciferase-like monooxygenase TRD_RS13665 PF08443 RimK-like ATP-grasp domain TRD_RS13670 PF00990 Diguanylate cyclase, GGDEF domain TRD_RS13670 PF00563 EAL domain TRD_RS13670 PF03707 Bacterial signalling protein N terminal repeat TRD_RS13675 PF00535 Glycosyl transferase family 2 TRD_RS13685 PF01510 N-acetylmuramoyl-L-alanine amidase TRD_RS13685 PF01471 Putative peptidoglycan binding domain TRD_RS13700 PF01569 PAP2 superfamily TRD_RS13705 PF02609 Exonuclease VII small subunit TRD_RS13710 PF00082 Subtilase family TRD_RS13710 PF05922 Peptidase inhibitor I9 TRD_RS13715 PF04542 Sigma-70 region 2 TRD_RS13715 PF04545 Sigma-70, region 4 TRD_RS13715 PF04539 Sigma-70 region 3 TRD_RS13715 PF04542 Sigma-70 region 2 TRD_RS13715 PF00140 Sigma-70 factor, region 1.2 TRD_RS13715 PF03979 Sigma-70 factor, region 1.1 TRD_RS13715 PF04545 Sigma-70, region 4 TRD_RS13715 PF04539 Sigma-70 region 3 TRD_RS13715 PF00140 Sigma-70 factor, region 1.2 TRD_RS13715 PF03979 Sigma-70 factor, region 1.1 TRD_RS13735 PF00563 EAL domain TRD_RS13735 PF00990 Diguanylate cyclase, GGDEF domain TRD_RS13735 PF13426 PAS domain TRD_RS13740 PF08241 Methyltransferase domain TRD_RS13745 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TRD_RS13755 PF13419 Haloacid dehalogenase-like hydrolase TRD_RS13765 PF00990 Diguanylate cyclase, GGDEF domain TRD_RS13765 PF13426 PAS domain TRD_RS13765 PF00563 EAL domain TRD_RS13775 PF01551 Peptidase family M23 TRD_RS13775 PF01464 Transglycosylase SLT domain TRD_RS13775 PF10145 Phage-related minor tail protein TRD_RS13915 PF00701 Dihydrodipicolinate synthetase family TRD_RS13920 PF02151 UvrB/uvrC motif TRD_RS13920 PF08459 UvrC Helix-hairpin-helix N-terminal TRD_RS13920 PF01541 GIY-YIG catalytic domain TRD_RS13920 PF12826 Helix-hairpin-helix motif TRD_RS13930 PF08245 Mur ligase middle domain TRD_RS13930 PF02875 Mur ligase family, glutamate ligase domain TRD_RS13995 PF02811 PHP domain TRD_RS13995 PF14579 Helix-hairpin-helix motif TRD_RS13995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TRD_RS13995 PF07733 Bacterial DNA polymerase III alpha NTPase domain