TRD_RS03245 4504335ed0c5259e0784873e909edf4f 201 SUPERFAMILY SSF81452 7 199 9.94E-56 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 TRD_RS03245 4504335ed0c5259e0784873e909edf4f 201 Gene3D G3DSA:1.20.120.80 22 199 7.8E-55 T 22-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 TRD_RS03245 4504335ed0c5259e0784873e909edf4f 201 PANTHER PTHR11403 5 199 2.2E-59 T 22-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 TRD_RS03245 4504335ed0c5259e0784873e909edf4f 201 Pfam PF00510 Cytochrome c oxidase subunit III 5 198 7.9E-22 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 TRD_RS01420 9bf76e0497d95fe49bc2a0eb06474cdd 230 PANTHER PTHR13707 5 221 4.8E-95 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 TRD_RS01420 9bf76e0497d95fe49bc2a0eb06474cdd 230 SUPERFAMILY SSF100950 4 219 3.81E-63 T 22-04-2016 TRD_RS01420 9bf76e0497d95fe49bc2a0eb06474cdd 230 Pfam PF01144 Coenzyme A transferase 8 200 2.0E-34 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 TRD_RS01420 9bf76e0497d95fe49bc2a0eb06474cdd 230 Gene3D G3DSA:3.40.810.20 4 212 1.8E-79 T 22-04-2016 TRD_RS01420 9bf76e0497d95fe49bc2a0eb06474cdd 230 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 208 8.8E-85 T 22-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 TRD_RS01420 9bf76e0497d95fe49bc2a0eb06474cdd 230 SMART SM00882 6 202 1.6E-53 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 TRD_RS12535 442469f251b5c92493e12e707c1bd5b5 143 PANTHER PTHR11067 4 139 1.5E-45 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 TRD_RS12535 442469f251b5c92493e12e707c1bd5b5 143 Pfam PF01725 Ham1 family 11 142 1.0E-30 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 TRD_RS12535 442469f251b5c92493e12e707c1bd5b5 143 SUPERFAMILY SSF52972 4 143 1.73E-42 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like TRD_RS12535 442469f251b5c92493e12e707c1bd5b5 143 Gene3D G3DSA:3.90.950.10 4 142 1.7E-49 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like TRD_RS12535 442469f251b5c92493e12e707c1bd5b5 143 PANTHER PTHR11067:SF9 4 139 1.5E-45 T 22-04-2016 TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 Pfam PF02754 Cysteine-rich domain 325 409 2.3E-16 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 Pfam PF02754 Cysteine-rich domain 196 279 1.4E-16 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 PANTHER PTHR32479:SF2 16 419 2.3E-148 T 22-04-2016 TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 PANTHER PTHR32479 16 419 2.3E-148 T 22-04-2016 TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 79 90 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 27 38 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 Pfam PF13183 4Fe-4S dicluster domain 24 93 1.3E-12 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 SUPERFAMILY SSF46548 18 108 6.8E-20 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 Gene3D G3DSA:1.10.1060.10 17 113 1.6E-21 T 22-04-2016 TRD_RS01235 86092d5052c9e54456ec818ac31c9946 449 PIRSF PIRSF000139 14 439 3.6E-130 T 22-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit TRD_RS01070 fb5d661aa69998b96f614dc11271f9ed 783 PANTHER PTHR30489 462 783 2.9E-27 T 22-04-2016 TRD_RS01070 fb5d661aa69998b96f614dc11271f9ed 783 PANTHER PTHR30489 3 62 2.9E-27 T 22-04-2016 TRD_RS01070 fb5d661aa69998b96f614dc11271f9ed 783 Pfam PF12704 MacB-like periplasmic core domain 426 626 9.4E-10 T 22-04-2016 IPR025857 MacB-like periplasmic core domain TRD_RS01070 fb5d661aa69998b96f614dc11271f9ed 783 Pfam PF02687 FtsX-like permease family 260 377 4.5E-14 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 TRD_RS01070 fb5d661aa69998b96f614dc11271f9ed 783 Pfam PF02687 FtsX-like permease family 658 775 1.0E-15 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 6.5E-28 T 22-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 Gene3D G3DSA:2.40.50.140 2 71 2.1E-38 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 SUPERFAMILY SSF50249 2 74 3.0E-28 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 PANTHER PTHR33370 3 81 3.1E-47 T 22-04-2016 TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 SMART SM00316 4 72 1.9E-8 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.9E-37 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 TRD_RS04415 ca26daaec29d6d8a050f4ee29e463dfe 81 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.656 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 SUPERFAMILY SSF50249 128 185 2.91E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS07955 64394439982aa199c18c167b35d80b73 186 PIRSF PIRSF005901 1 186 6.9E-65 T 22-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 SUPERFAMILY SSF50249 65 129 1.67E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS07955 64394439982aa199c18c167b35d80b73 186 SMART SM01185 67 121 1.5E-25 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 59 1.4E-20 T 22-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 3.4E-72 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Gene3D G3DSA:2.40.50.140 65 126 1.6E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 121 1.7E-21 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 SMART SM00841 129 184 1.7E-32 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 SUPERFAMILY SSF50104 1 63 5.01E-18 T 22-04-2016 IPR008991 Translation protein SH3-like domain TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Gene3D G3DSA:2.40.50.140 128 185 1.2E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS07955 64394439982aa199c18c167b35d80b73 186 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 22-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Pfam PF09285 Elongation factor P, C-terminal 129 184 4.5E-26 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Gene3D G3DSA:2.30.30.30 1 63 4.7E-24 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 Hamap MF_00141 Elongation factor P [efp]. 1 185 46.374 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 TRD_RS07955 64394439982aa199c18c167b35d80b73 186 PANTHER PTHR30053 1 186 3.6E-85 T 22-04-2016 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 Gene3D G3DSA:3.30.465.10 100 219 2.1E-39 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 Pfam PF01565 FAD binding domain 44 182 6.5E-44 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 PANTHER PTHR11748 3 476 4.5E-187 T 22-04-2016 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 SUPERFAMILY SSF56176 6 219 2.76E-71 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 SUPERFAMILY SSF55103 222 469 6.7E-69 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 Pfam PF02913 FAD linked oxidases, C-terminal domain 219 459 1.2E-64 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 Gene3D G3DSA:1.10.45.10 420 459 1.5E-5 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 Gene3D G3DSA:3.30.43.10 3 99 1.7E-31 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 TRD_RS01225 76191d2b64a7fbc437f04ad70432dfb2 486 PANTHER PTHR11748:SF78 3 476 4.5E-187 T 22-04-2016 TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 TIGRFAM TIGR00417 speE: spermidine synthase 16 281 2.1E-79 T 22-04-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 Pfam PF01564 Spermine/spermidine synthase 14 240 8.8E-64 T 22-04-2016 TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 287 35.98 T 22-04-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 SUPERFAMILY SSF53335 2 287 1.04E-82 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 Gene3D G3DSA:3.40.50.150 60 290 4.3E-76 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 Gene3D G3DSA:2.30.140.10 6 59 5.7E-14 T 22-04-2016 TRD_RS01055 999fb27a5db45657f301a455d0d8c441 312 PANTHER PTHR11558 1 288 2.5E-102 T 22-04-2016 TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 SUPERFAMILY SSF52402 137 285 1.26E-36 T 22-04-2016 TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 Gene3D G3DSA:3.40.50.620 137 286 1.4E-39 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 SUPERFAMILY SSF52402 1 125 9.07E-30 T 22-04-2016 TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 PRINTS PR01438 Universal stress protein signature 261 283 1.0E-14 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 PRINTS PR01438 Universal stress protein signature 243 255 1.0E-14 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 PRINTS PR01438 Universal stress protein signature 2 20 1.0E-14 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 Gene3D G3DSA:3.40.50.620 1 125 2.6E-29 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 Pfam PF00582 Universal stress protein family 137 283 1.5E-29 T 22-04-2016 IPR006016 UspA GO:0006950 TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 Pfam PF00582 Universal stress protein family 1 125 3.8E-20 T 22-04-2016 IPR006016 UspA GO:0006950 TRD_RS08445 26a95991dedaf44ac4fad014082612ee 291 PANTHER PTHR31964 121 288 1.4E-32 T 22-04-2016 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 139 1.1E-34 T 22-04-2016 IPR001602 Uncharacterised protein family UPF0047 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 Gene3D G3DSA:2.60.120.460 4 139 5.9E-43 T 22-04-2016 IPR001602 Uncharacterised protein family UPF0047 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 PIRSF PIRSF004681 3 140 3.1E-39 T 22-04-2016 IPR001602 Uncharacterised protein family UPF0047 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 101 119 - T 22-04-2016 IPR001602 Uncharacterised protein family UPF0047 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 PANTHER PTHR30615 1 139 5.6E-40 T 22-04-2016 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 Pfam PF01894 Uncharacterised protein family UPF0047 21 137 4.3E-37 T 22-04-2016 IPR001602 Uncharacterised protein family UPF0047 TRD_RS02375 90b02502f82ab210cbfc2f8854bd0da0 141 SUPERFAMILY SSF111038 6 139 4.84E-41 T 22-04-2016 IPR001602 Uncharacterised protein family UPF0047 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 Gene3D G3DSA:3.10.28.20 217 272 2.8E-6 T 22-04-2016 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 SUPERFAMILY SSF141130 11 287 2.09E-56 T 22-04-2016 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 Pfam PF03069 Acetamidase/Formamidase family 153 266 5.1E-11 T 22-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 Pfam PF03069 Acetamidase/Formamidase family 26 141 4.3E-6 T 22-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 PANTHER PTHR31891:SF6 6 264 1.0E-35 T 22-04-2016 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 Gene3D G3DSA:2.60.120.580 15 84 6.6E-40 T 22-04-2016 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 Gene3D G3DSA:2.60.120.580 128 211 6.6E-40 T 22-04-2016 TRD_RS02350 cc6908d957a12f1dac6032c3b1605da5 307 PANTHER PTHR31891 6 264 1.0E-35 T 22-04-2016 TRD_RS04360 9e083233389a904506518e04a597f577 305 PANTHER PTHR36512 7 299 4.2E-77 T 22-04-2016 TRD_RS04360 9e083233389a904506518e04a597f577 305 PANTHER PTHR36512:SF3 7 299 4.2E-77 T 22-04-2016 TRD_RS04360 9e083233389a904506518e04a597f577 305 SUPERFAMILY SSF56266 7 291 4.71E-49 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 TRD_RS04360 9e083233389a904506518e04a597f577 305 Pfam PF03576 Peptidase family S58 7 303 1.0E-46 T 22-04-2016 IPR005321 Peptidase S58, DmpA TRD_RS04360 9e083233389a904506518e04a597f577 305 Gene3D G3DSA:3.60.70.12 7 303 1.4E-54 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 SUPERFAMILY SSF51984 8 103 1.19E-11 T 22-04-2016 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 SUPERFAMILY SSF53244 321 462 1.88E-32 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 Pfam PF08245 Mur ligase middle domain 121 301 2.3E-28 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 PANTHER PTHR23135 4 469 3.7E-137 T 22-04-2016 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 Gene3D G3DSA:3.90.190.20 322 459 1.5E-36 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 14 461 5.6E-116 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 392 2.4E-7 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 Gene3D G3DSA:3.40.1190.10 106 318 1.4E-50 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 12 462 28.504 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 Gene3D G3DSA:3.40.50.720 8 103 1.3E-13 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 SUPERFAMILY SSF53623 108 316 1.11E-46 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00285 c5548be1f1122fb22f23fac54d95341d 469 PANTHER PTHR23135:SF2 4 469 3.7E-137 T 22-04-2016 TRD_RS08285 d84e6c96c466e20eaa418922ef3ccb06 327 PANTHER PTHR21314 7 327 2.6E-102 T 22-04-2016 IPR019438 Potential Queuosine, Q, salvage protein family TRD_RS08285 d84e6c96c466e20eaa418922ef3ccb06 327 Pfam PF10343 Potential Queuosine, Q, salvage protein family 56 327 6.8E-86 T 22-04-2016 IPR019438 Potential Queuosine, Q, salvage protein family TRD_RS08285 d84e6c96c466e20eaa418922ef3ccb06 327 PANTHER PTHR21314:SF0 7 327 2.6E-102 T 22-04-2016 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 232 248 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 8 361 39.728 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Pfam PF03462 PCRF domain 15 208 1.1E-73 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Gene3D G3DSA:1.20.58.410 3 92 5.0E-18 T 22-04-2016 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 PANTHER PTHR11075 7 360 7.2E-177 T 22-04-2016 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 PANTHER PTHR11075:SF9 7 360 7.2E-177 T 22-04-2016 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 SMART SM00937 69 183 6.3E-64 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Pfam PF00472 RF-1 domain 216 325 1.2E-42 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 Gene3D G3DSA:3.30.160.20 215 293 2.5E-35 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 SUPERFAMILY SSF75620 15 357 1.27E-135 T 22-04-2016 TRD_RS00435 e6a1bfc7489c6a90502440d6b3a5a7e8 363 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 7 358 3.9E-158 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 Gene3D G3DSA:3.40.50.300 2 246 6.3E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 SUPERFAMILY SSF52540 2 241 3.87E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 PANTHER PTHR24220 2 253 1.6E-120 T 22-04-2016 TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 1 254 4.6E-111 T 22-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 SMART SM00382 25 221 7.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 PANTHER PTHR24220:SF585 2 253 1.6E-120 T 22-04-2016 TRD_RS08535 70fd0feb277e53ae81835f915a72056a 254 Pfam PF00005 ABC transporter 16 174 2.3E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573:SF18 100 157 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573:SF18 328 546 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573:SF18 1076 1122 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573:SF18 571 676 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573:SF18 188 305 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573:SF18 764 1040 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 44 144 1.7E-39 T 22-04-2016 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573 100 157 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573 328 546 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573 1076 1122 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573 571 676 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573 188 305 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PANTHER PTHR11573 764 1040 0.0 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PRINTS PR01183 Ribonucleotide reductase large chain signature 272 291 8.0E-9 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PRINTS PR01183 Ribonucleotide reductase large chain signature 399 410 8.0E-9 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 PRINTS PR01183 Ribonucleotide reductase large chain signature 472 494 8.0E-9 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 104 682 1.4E-149 T 22-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 Gene3D G3DSA:3.20.70.20 53 520 2.7E-96 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 Gene3D G3DSA:3.20.70.20 593 639 2.7E-96 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 Gene3D G3DSA:3.20.70.20 800 846 2.7E-96 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 SUPERFAMILY SSF51998 766 845 1.46E-132 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 SUPERFAMILY SSF51998 194 644 1.46E-132 T 22-04-2016 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 Pfam PF02867 Ribonucleotide reductase, barrel domain 195 682 3.6E-113 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08470 1feec2b0ea2a55d618017c7cebaafecf 1122 Pfam PF02867 Ribonucleotide reductase, barrel domain 737 841 5.8E-19 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 8 151 4.4E-37 T 22-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 SUPERFAMILY SSF51735 159 299 1.42E-22 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 PANTHER PTHR13812 1 297 4.0E-65 T 22-04-2016 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 6 368 2.7E-74 T 22-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 297 5.1E-28 T 22-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 4 405 21.712 T 22-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 312 389 7.1E-5 T 22-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 PANTHER PTHR13812:SF18 1 297 4.0E-65 T 22-04-2016 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 22-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 PIRSF PIRSF000445 3 399 2.3E-89 T 22-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 SUPERFAMILY SSF69742 3 152 1.83E-36 T 22-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05210 db85d47fc659b0ac33bd28feb16179d1 406 Gene3D G3DSA:3.40.50.720 167 297 5.6E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01685 2af96ce91250915d52573585164d01ee 536 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 384 528 4.3E-39 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 TRD_RS01685 2af96ce91250915d52573585164d01ee 536 PANTHER PTHR18968:SF13 1 531 5.5E-161 T 22-04-2016 TRD_RS01685 2af96ce91250915d52573585164d01ee 536 SUPERFAMILY SSF52467 157 341 3.64E-37 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS01685 2af96ce91250915d52573585164d01ee 536 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 418 437 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 TRD_RS01685 2af96ce91250915d52573585164d01ee 536 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 326 4.8E-34 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 TRD_RS01685 2af96ce91250915d52573585164d01ee 536 Gene3D G3DSA:3.40.50.1220 186 374 2.9E-46 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS01685 2af96ce91250915d52573585164d01ee 536 Gene3D G3DSA:3.40.50.970 375 531 1.8E-56 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS01685 2af96ce91250915d52573585164d01ee 536 SUPERFAMILY SSF52518 360 532 1.72E-55 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS01685 2af96ce91250915d52573585164d01ee 536 SUPERFAMILY SSF52518 1 175 1.18E-53 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS01685 2af96ce91250915d52573585164d01ee 536 Gene3D G3DSA:3.40.50.970 2 173 9.1E-61 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS01685 2af96ce91250915d52573585164d01ee 536 PANTHER PTHR18968 1 531 5.5E-161 T 22-04-2016 TRD_RS01685 2af96ce91250915d52573585164d01ee 536 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 169 2.5E-56 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 TRD_RS01575 063842c9cbce0c1f64ea2573218edb84 252 Gene3D G3DSA:3.40.50.1820 1 235 7.3E-49 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS01575 063842c9cbce0c1f64ea2573218edb84 252 Pfam PF00561 alpha/beta hydrolase fold 20 128 1.5E-17 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS01575 063842c9cbce0c1f64ea2573218edb84 252 SUPERFAMILY SSF53474 1 244 1.71E-48 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS01575 063842c9cbce0c1f64ea2573218edb84 252 PANTHER PTHR10992 3 246 1.1E-40 T 22-04-2016 TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 SMART SM00450 168 295 7.8E-24 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 SMART SM00450 22 136 4.4E-20 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 ProSitePatterns PS00380 Rhodanese signature 1. 48 59 - T 22-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 SUPERFAMILY SSF52821 15 151 2.75E-39 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 SUPERFAMILY SSF52821 175 298 3.01E-40 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 Gene3D G3DSA:3.40.250.10 15 151 3.0E-38 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 ProSitePatterns PS00683 Rhodanese C-terminal signature. 279 289 - T 22-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 PANTHER PTHR11364:SF3 3 299 1.4E-126 T 22-04-2016 TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 PANTHER PTHR11364 3 299 1.4E-126 T 22-04-2016 TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 Gene3D G3DSA:3.40.250.10 176 299 5.3E-42 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 Pfam PF00581 Rhodanese-like domain 23 132 1.0E-15 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS05460 b73b1c42392111e8122c2feb144bdd92 299 Pfam PF00581 Rhodanese-like domain 177 290 6.0E-20 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Pfam PF00689 Cation transporting ATPase, C-terminus 681 862 9.3E-35 T 22-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 311 317 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 81 328 3.3E-40 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 569 674 7.3E-32 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 408 540 8.9E-21 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Gene3D G3DSA:1.20.1110.10 54 106 7.3E-88 T 22-04-2016 IPR023298 P-type ATPase, transmembrane domain TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Gene3D G3DSA:1.20.1110.10 564 866 7.3E-88 T 22-04-2016 IPR023298 P-type ATPase, transmembrane domain TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Pfam PF00122 E1-E2 ATPase 80 300 4.2E-62 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 2.6E-37 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 619 631 2.6E-37 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 493 504 2.6E-37 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 159 173 2.6E-37 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 515 525 2.6E-37 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 595 614 2.6E-37 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF56784 307 327 1.03E-58 T 22-04-2016 IPR023214 HAD-like domain TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF56784 446 702 1.03E-58 T 22-04-2016 IPR023214 HAD-like domain TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 627 652 1.2E-16 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 595 611 1.2E-16 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 449 467 1.2E-16 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SMART SM00831 4 74 1.6E-10 T 22-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Pfam PF00690 Cation transporter/ATPase, N-terminus 15 67 4.2E-15 T 22-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Gene3D G3DSA:2.70.150.10 15 53 1.2E-38 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Gene3D G3DSA:2.70.150.10 107 208 1.2E-38 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Pfam PF00702 haloacid dehalogenase-like hydrolase 306 609 2.2E-26 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PANTHER PTHR24093 11 731 3.1E-264 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 PANTHER PTHR24093 754 870 3.1E-264 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 Gene3D G3DSA:3.40.1110.10 299 499 2.8E-40 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF81660 316 497 6.54E-34 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF81665 210 303 5.62E-99 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF81665 14 112 5.62E-99 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF81665 645 868 5.62E-99 T 22-04-2016 TRD_RS02690 82109162463bc81d8585bd3ede83fe71 870 SUPERFAMILY SSF81653 111 208 2.35E-28 T 22-04-2016 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 78 92 9.4E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 70 77 9.4E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 92 102 9.4E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.4E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 TIGRFAM TIGR00165 S18: ribosomal protein bS18 37 103 6.6E-33 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 ProSitePatterns PS00057 Ribosomal protein S18 signature. 53 76 - T 22-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 PANTHER PTHR13479 38 103 7.4E-26 T 22-04-2016 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 53 105 4.0E-15 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 SUPERFAMILY SSF46911 33 104 5.49E-28 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 Gene3D G3DSA:4.10.640.10 40 104 2.7E-31 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 34 105 21.026 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05825 c67bfbca52a5e7151d031f9356eb6e46 106 Pfam PF01084 Ribosomal protein S18 50 100 1.8E-24 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 Pfam PF02780 Transketolase, C-terminal domain 196 316 8.1E-39 T 22-04-2016 IPR033248 Transketolase, C-terminal domain TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 5.0E-42 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 PANTHER PTHR11624:SF11 4 334 5.9E-157 T 22-04-2016 TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 SUPERFAMILY SSF52922 188 324 9.95E-41 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 Gene3D G3DSA:3.40.50.970 3 194 1.7E-76 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 SUPERFAMILY SSF52518 3 204 4.12E-65 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 Gene3D G3DSA:3.40.50.920 197 322 4.3E-46 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 PANTHER PTHR11624 4 334 5.9E-157 T 22-04-2016 IPR033247 Transketolase family TRD_RS08115 3d402867440ee5bc7081fe1e159973e5 334 SMART SM00861 5 179 1.5E-56 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF141868 750 998 1.09E-84 T 22-04-2016 IPR001633 EAL domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.70.270 581 739 3.0E-29 T 22-04-2016 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55785 470 577 8.03E-16 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55785 158 274 5.48E-17 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55785 36 140 1.05E-10 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF01590 GAF domain 305 443 3.2E-9 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.40 278 456 1.1E-13 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF00990 Diguanylate cyclase, GGDEF domain 579 731 9.2E-21 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00267 568 735 1.9E-24 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.20 35 133 3.5E-7 T 22-04-2016 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00065 303 455 8.5E-11 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 154 279 4.7E-10 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 457 574 9.4E-15 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 35 142 5.1E-6 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.20 457 566 1.6E-16 T 22-04-2016 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.30.450.20 136 277 7.9E-18 T 22-04-2016 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 576 735 1.4E-14 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF08448 PAS fold 468 570 1.5E-9 T 22-04-2016 IPR013656 PAS fold-4 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF00563 EAL domain 751 986 1.8E-73 T 22-04-2016 IPR001633 EAL domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00091 30 96 0.81 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00091 459 527 3.4E-8 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00091 153 224 3.1 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 PANTHER PTHR33121 700 1000 1.3E-64 T 22-04-2016 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF08447 PAS fold 177 261 1.7E-12 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00052 745 991 4.8E-109 T 22-04-2016 IPR001633 EAL domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Pfam PF13188 PAS domain 38 67 0.0094 T 22-04-2016 IPR000014 PAS domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 Gene3D G3DSA:3.20.20.450 749 998 2.7E-93 T 22-04-2016 IPR001633 EAL domain TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55073 584 736 1.41E-23 T 22-04-2016 IPR029787 Nucleotide cyclase TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00086 529 568 250.0 T 22-04-2016 IPR001610 PAC motif TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SMART SM00086 230 272 0.0011 T 22-04-2016 IPR001610 PAC motif TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 PANTHER PTHR33121:SF13 700 1000 1.3E-64 T 22-04-2016 TRD_RS13670 c9471b0f63f96721b939f6a0c48af453 1008 SUPERFAMILY SSF55781 305 454 5.89E-15 T 22-04-2016 IPR029016 GAF domain-like TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.30.1390.30 211 273 5.2E-9 T 22-04-2016 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Pfam PF03717 Penicillin-binding Protein dimerisation domain 189 351 2.8E-24 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 70 181 1.7E-11 T 22-04-2016 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.10.450.100 69 175 8.4E-18 T 22-04-2016 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.90.1310.10 274 366 4.4E-24 T 22-04-2016 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Pfam PF00905 Penicillin binding protein transpeptidase domain 387 715 4.3E-69 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 PANTHER PTHR30627:SF2 182 715 1.3E-143 T 22-04-2016 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 PANTHER PTHR30627 182 715 1.3E-143 T 22-04-2016 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 SUPERFAMILY SSF56601 370 718 1.76E-91 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 SUPERFAMILY SSF56519 182 369 1.31E-34 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 182 717 2.0E-151 T 22-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 Gene3D G3DSA:3.40.710.10 369 717 3.2E-102 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS06450 7f94a4bdc00995ae6f10729a25c90ee6 725 SUPERFAMILY SSF54427 72 178 5.4E-15 T 22-04-2016 IPR032710 NTF2-like domain TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 Pfam PF00013 KH domain 202 259 1.2E-7 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 Pfam PF12072 Domain of unknown function (DUF3552) 6 194 3.2E-37 T 22-04-2016 IPR022711 Ribonuclease Y, N-terminal TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 SUPERFAMILY SSF54791 197 293 6.77E-18 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 PANTHER PTHR12826 179 508 1.0E-137 T 22-04-2016 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 SMART SM00471 321 427 3.2E-13 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 Hamap MF_00335 Ribonuclease Y [rny]. 4 509 24.78 T 22-04-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 Gene3D G3DSA:3.30.1370.10 210 286 1.2E-7 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 9 509 5.5E-212 T 22-04-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 Gene3D G3DSA:1.10.3210.10 305 485 1.6E-42 T 22-04-2016 IPR006674 HD domain TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 SMART SM00322 197 264 5.1E-10 T 22-04-2016 IPR004087 K Homology domain GO:0003676 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 SUPERFAMILY SSF109604 307 438 2.3E-31 T 22-04-2016 TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 TIGRFAM TIGR00277 HDIG: HDIG domain 321 398 4.9E-23 T 22-04-2016 IPR006675 HDIG domain TRD_RS08785 10e606ddf01fec74e0260174f843c3e9 509 Pfam PF01966 HD domain 325 416 1.1E-18 T 22-04-2016 IPR006674 HD domain TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 ProSitePatterns PS00163 Fumarate lyases signature. 318 327 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00145 Argininosuccinate lyase family signature 176 196 1.1E-8 T 22-04-2016 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00145 Argininosuccinate lyase family signature 135 157 1.1E-8 T 22-04-2016 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00145 Argininosuccinate lyase family signature 318 334 1.1E-8 T 22-04-2016 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 SUPERFAMILY SSF48557 7 460 6.48E-143 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 Pfam PF00206 Lyase 14 343 8.0E-94 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 Pfam PF10415 Fumarase C C-terminus 409 460 5.2E-20 T 22-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 Gene3D G3DSA:1.10.275.10 5 140 1.1E-55 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PANTHER PTHR11444:SF25 1 463 4.4E-218 T 22-04-2016 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 Gene3D G3DSA:1.20.200.10 141 402 5.5E-83 T 22-04-2016 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 Gene3D G3DSA:1.10.40.30 409 464 2.1E-21 T 22-04-2016 TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 9.1E-27 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 272 299 9.1E-27 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 181 199 9.1E-27 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PRINTS PR00149 Fumarate lyase superfamily signature 318 334 9.1E-27 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS06875 78669a6e989044b9a6d1bcff97527921 471 PANTHER PTHR11444 1 463 4.4E-218 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:3.40.50.300 7 234 2.1E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 Pfam PF08402 TOBE domain 282 355 3.0E-7 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 PANTHER PTHR24220 5 266 4.2E-169 T 22-04-2016 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 PANTHER PTHR24220 282 318 4.2E-169 T 22-04-2016 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 SMART SM00382 28 211 5.0E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:2.40.50.100 349 363 1.2E-13 T 22-04-2016 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:2.40.50.100 239 286 1.2E-13 T 22-04-2016 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 Pfam PF00005 ABC transporter 20 161 3.2E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 SUPERFAMILY SSF52540 5 242 9.64E-89 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 Gene3D G3DSA:2.40.50.140 287 345 9.2E-12 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 PANTHER PTHR24220:SF151 5 266 4.2E-169 T 22-04-2016 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 PANTHER PTHR24220:SF151 282 318 4.2E-169 T 22-04-2016 TRD_RS05275 59529cb5ed6d9694df3c47798f35d868 364 SUPERFAMILY SSF50331 236 363 1.34E-25 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 Gene3D G3DSA:3.30.9.10 87 138 4.0E-7 T 22-04-2016 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 Gene3D G3DSA:3.30.9.10 218 233 4.0E-7 T 22-04-2016 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 Pfam PF01266 FAD dependent oxidoreductase 3 391 2.0E-65 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 PANTHER PTHR13847 2 398 6.3E-164 T 22-04-2016 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 Gene3D G3DSA:3.50.50.60 1 84 2.5E-27 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 Gene3D G3DSA:3.50.50.60 139 214 2.5E-27 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 PANTHER PTHR13847:SF191 2 398 6.3E-164 T 22-04-2016 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 SUPERFAMILY SSF51905 352 397 1.04E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04080 d392fb1c0069af92d4688b92c28d9e80 400 SUPERFAMILY SSF51905 1 217 1.04E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 2 287 8.0E-80 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 SUPERFAMILY SSF53244 211 285 7.88E-19 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 Pfam PF08245 Mur ligase middle domain 8 189 1.3E-35 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 SUPERFAMILY SSF53623 2 208 1.19E-49 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 Pfam PF02875 Mur ligase family, glutamate ligase domain 211 285 5.6E-15 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 Gene3D G3DSA:3.40.1190.10 2 214 9.9E-58 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 PANTHER PTHR23135:SF4 2 287 2.9E-86 T 22-04-2016 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 PANTHER PTHR23135 2 287 2.9E-86 T 22-04-2016 TRD_RS13355 f5f1fdc8820c11219ef0cec710cc316d 287 Gene3D G3DSA:3.90.190.20 215 286 5.8E-20 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS07045 d31f7186c5fc737bf9a7f2d0026fc9c5 421 Gene3D G3DSA:1.20.1250.20 13 199 5.3E-17 T 22-04-2016 TRD_RS07045 d31f7186c5fc737bf9a7f2d0026fc9c5 421 Pfam PF05977 Transmembrane secretion effector 13 410 3.9E-27 T 22-04-2016 IPR010290 Transmembrane secretion effector TRD_RS07045 d31f7186c5fc737bf9a7f2d0026fc9c5 421 Gene3D G3DSA:1.20.1250.20 243 404 1.4E-7 T 22-04-2016 TRD_RS07045 d31f7186c5fc737bf9a7f2d0026fc9c5 421 PANTHER PTHR23513 1 411 8.7E-69 T 22-04-2016 TRD_RS07045 d31f7186c5fc737bf9a7f2d0026fc9c5 421 SUPERFAMILY SSF103473 13 408 1.83E-36 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS01925 9207331f042ad50f84f64f937054a297 435 Pfam PF00534 Glycosyl transferases group 1 222 400 2.2E-36 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS01925 9207331f042ad50f84f64f937054a297 435 SUPERFAMILY SSF53756 18 422 2.62E-91 T 22-04-2016 TRD_RS01925 9207331f042ad50f84f64f937054a297 435 Gene3D G3DSA:3.40.50.2000 196 401 1.7E-45 T 22-04-2016 TRD_RS01925 9207331f042ad50f84f64f937054a297 435 Pfam PF13439 Glycosyltransferase Family 4 37 214 8.2E-32 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS01925 9207331f042ad50f84f64f937054a297 435 PANTHER PTHR12526 117 421 5.6E-77 T 22-04-2016 TRD_RS01925 9207331f042ad50f84f64f937054a297 435 PANTHER PTHR12526 17 98 5.6E-77 T 22-04-2016 TRD_RS01925 9207331f042ad50f84f64f937054a297 435 PANTHER PTHR12526:SF185 117 421 5.6E-77 T 22-04-2016 TRD_RS01925 9207331f042ad50f84f64f937054a297 435 PANTHER PTHR12526:SF185 17 98 5.6E-77 T 22-04-2016 TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SUPERFAMILY SSF52540 269 437 1.12E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SUPERFAMILY SSF52540 466 599 1.12E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SMART SM00490 511 597 6.9E-5 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 SMART SM00487 253 468 5.7E-6 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 PANTHER PTHR24031 426 595 1.1E-14 T 22-04-2016 TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 PANTHER PTHR24031 184 187 1.1E-14 T 22-04-2016 TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 16 224 1.8E-23 T 22-04-2016 IPR006483 CRISPR-associated Cas3-HD domain TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 PANTHER PTHR24031:SF299 426 595 1.1E-14 T 22-04-2016 TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 PANTHER PTHR24031:SF299 184 187 1.1E-14 T 22-04-2016 TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Gene3D G3DSA:3.40.50.300 482 631 4.9E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Pfam PF00271 Helicase conserved C-terminal domain 484 596 1.8E-5 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 272 629 5.3E-78 T 22-04-2016 IPR006474 Helicase Cas3, CRISPR-associated, core TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Pfam PF00270 DEAD/DEAH box helicase 256 436 4.7E-10 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS00095 e718f7c8ae77fb67b95bfc3adfcc6eed 773 Gene3D G3DSA:3.40.50.300 256 437 2.7E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08035 c2dcfd5c3a919920b6c6fd45c947f0a4 196 Gene3D G3DSA:3.40.50.300 2 195 3.4E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08035 c2dcfd5c3a919920b6c6fd45c947f0a4 196 SUPERFAMILY SSF52540 4 195 5.87E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08035 c2dcfd5c3a919920b6c6fd45c947f0a4 196 Pfam PF01121 Dephospho-CoA kinase 6 183 6.4E-58 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 TRD_RS08035 c2dcfd5c3a919920b6c6fd45c947f0a4 196 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 7 190 1.2E-55 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 TRD_RS08035 c2dcfd5c3a919920b6c6fd45c947f0a4 196 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 5 195 27.084 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 TRD_RS08035 c2dcfd5c3a919920b6c6fd45c947f0a4 196 PANTHER PTHR10695 4 196 1.1E-84 T 22-04-2016 TRD_RS03920 f5876dd2353b010b44df365533e76107 295 Gene3D G3DSA:3.30.1530.10 224 274 7.7E-4 T 22-04-2016 IPR027407 Manganese catalase, domain 2 TRD_RS03920 f5876dd2353b010b44df365533e76107 295 Pfam PF05067 Manganese containing catalase 1 293 6.0E-86 T 22-04-2016 IPR007760 Manganese catalase TRD_RS03920 f5876dd2353b010b44df365533e76107 295 SUPERFAMILY SSF47240 1 292 2.13E-100 T 22-04-2016 IPR009078 Ferritin-like superfamily TRD_RS03920 f5876dd2353b010b44df365533e76107 295 PANTHER PTHR30565:SF3 2 280 2.5E-106 T 22-04-2016 TRD_RS03920 f5876dd2353b010b44df365533e76107 295 Gene3D G3DSA:1.20.1260.10 1 196 4.3E-63 T 22-04-2016 IPR012347 Ferritin-related TRD_RS03920 f5876dd2353b010b44df365533e76107 295 PANTHER PTHR30565 2 280 2.5E-106 T 22-04-2016 TRD_RS08925 abb7a25428b405e7407764356adb90ba 105 SUPERFAMILY SSF52833 2 101 1.07E-23 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS08925 abb7a25428b405e7407764356adb90ba 105 Gene3D G3DSA:3.40.30.10 3 101 5.8E-22 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS08925 abb7a25428b405e7407764356adb90ba 105 Pfam PF00578 AhpC/TSA family 3 80 3.5E-16 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 TRD_RS08925 abb7a25428b405e7407764356adb90ba 105 PANTHER PTHR10681 3 96 1.8E-19 T 22-04-2016 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF52540 3 172 2.84E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 7 626 1.4E-106 T 22-04-2016 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF00009 Elongation factor Tu GTP binding domain 7 170 1.1E-31 T 22-04-2016 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:3.40.50.300 4 171 1.5E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PANTHER PTHR23115 1 369 2.5E-159 T 22-04-2016 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PANTHER PTHR23115 436 460 2.5E-159 T 22-04-2016 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF09106 Elongation factor SelB, winged helix 454 508 9.8E-13 T 22-04-2016 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:2.40.30.10 180 306 3.5E-27 T 22-04-2016 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF03144 Elongation factor Tu domain 2 196 263 7.7E-10 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF50447 179 269 4.32E-23 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF46785 575 627 8.82E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF50465 268 366 7.67E-24 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:1.10.10.10 446 509 6.8E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 SUPERFAMILY SSF46785 447 513 2.18E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Pfam PF09107 Elongation factor SelB, winged helix 584 627 2.4E-19 T 22-04-2016 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PRINTS PR00315 GTP-binding elongation factor signature 75 86 6.2E-7 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PRINTS PR00315 GTP-binding elongation factor signature 59 69 6.2E-7 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PRINTS PR00315 GTP-binding elongation factor signature 7 20 6.2E-7 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 Gene3D G3DSA:1.10.10.10 572 627 1.5E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PANTHER PTHR23115:SF129 1 369 2.5E-159 T 22-04-2016 TRD_RS02345 4c682cfee8bf20818af83da564d28aa3 630 PANTHER PTHR23115:SF129 436 460 2.5E-159 T 22-04-2016 TRD_RS01675 8b417de946ef45bb6899ae7543735e20 220 PANTHER PTHR15032 5 215 4.1E-57 T 22-04-2016 TRD_RS01675 8b417de946ef45bb6899ae7543735e20 220 SUPERFAMILY SSF56281 4 192 1.33E-26 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS01675 8b417de946ef45bb6899ae7543735e20 220 PANTHER PTHR15032:SF18 5 215 4.1E-57 T 22-04-2016 TRD_RS01675 8b417de946ef45bb6899ae7543735e20 220 Gene3D G3DSA:3.60.15.10 3 214 1.9E-45 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS01675 8b417de946ef45bb6899ae7543735e20 220 Pfam PF13483 Beta-lactamase superfamily domain 5 186 8.8E-36 T 22-04-2016 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 Gene3D G3DSA:3.40.47.10 276 391 5.1E-71 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 Gene3D G3DSA:3.40.47.10 142 193 5.1E-71 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 Pfam PF00108 Thiolase, N-terminal domain 5 262 1.2E-102 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 2.8E-49 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 PIRSF PIRSF000429 2 392 2.5E-141 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 PANTHER PTHR18919:SF101 1 392 2.1E-211 T 22-04-2016 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 PANTHER PTHR18919 1 392 2.1E-211 T 22-04-2016 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 22-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 22-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.9E-154 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 SUPERFAMILY SSF53901 270 391 1.66E-46 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 Gene3D G3DSA:3.40.47.10 5 123 2.9E-79 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 Gene3D G3DSA:3.40.47.10 194 275 2.9E-79 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03270 2d286bc734f93c2a76335f4cb006f964 392 SUPERFAMILY SSF53901 5 269 3.26E-93 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 SUPERFAMILY SSF53067 152 338 2.76E-49 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 12 339 4.0E-147 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PANTHER PTHR19375:SF117 12 335 7.3E-164 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PANTHER PTHR19375 12 335 7.3E-164 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 SUPERFAMILY SSF53067 12 151 8.12E-40 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 5.8E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 5.8E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 5.8E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 5.8E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 5.8E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Pfam PF06723 MreB/Mbl protein 14 337 2.5E-143 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.30.420.40 164 189 1.9E-33 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.30.420.40 266 320 1.9E-33 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.90.640.10 190 261 1.0E-26 T 22-04-2016 TRD_RS09055 023bdf5ed77f15dc3e5d5a5b9a8802f9 358 Gene3D G3DSA:3.30.420.40 13 163 5.1E-45 T 22-04-2016 TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 Gene3D G3DSA:2.40.30.70 7 140 7.1E-34 T 22-04-2016 IPR023370 TsaA-like domain TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 Pfam PF01980 Uncharacterised protein family UPF0066 29 133 1.5E-23 T 22-04-2016 IPR023370 TsaA-like domain TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 165 241 6.4E-11 T 22-04-2016 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 PANTHER PTHR12818 260 270 6.1E-29 T 22-04-2016 TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 PANTHER PTHR12818 6 137 6.1E-29 T 22-04-2016 TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 Gene3D G3DSA:3.30.1330.20 205 241 3.4E-4 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 SUPERFAMILY SSF143555 157 242 1.44E-11 T 22-04-2016 TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 SUPERFAMILY SSF118196 6 142 1.96E-38 T 22-04-2016 IPR023370 TsaA-like domain TRD_RS13585 e53feba10598d2bdebf3455a87f47ae2 271 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 5 138 4.0E-33 T 22-04-2016 IPR023370 TsaA-like domain TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 PANTHER PTHR35177 2 81 7.0E-23 T 22-04-2016 TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 SUPERFAMILY SSF159127 2 79 1.31E-21 T 22-04-2016 TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 2 80 4.8E-21 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.0E-18 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 19 35 1.0E-18 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 60 72 1.0E-18 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 42 58 1.0E-18 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 Pfam PF01455 HupF/HypC family 2 69 3.0E-23 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS08735 934ae5c9950ca5e4270848b56d766c2a 91 PANTHER PTHR35177:SF2 2 81 7.0E-23 T 22-04-2016 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 Pfam PF01227 GTP cyclohydrolase I 30 203 1.4E-73 T 22-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 83 99 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 SUPERFAMILY SSF55620 16 204 6.67E-79 T 22-04-2016 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 PANTHER PTHR11109 22 203 8.3E-106 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 Gene3D G3DSA:3.30.1130.10 76 204 3.8E-61 T 22-04-2016 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 Gene3D G3DSA:1.10.286.10 22 73 2.6E-21 T 22-04-2016 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 29 203 4.7E-74 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 131 141 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 TRD_RS05235 046dd338ad9ace483429021e4537e3b3 207 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 22 204 38.555 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 121 237 2.3E-43 T 22-04-2016 IPR003390 DNA integrity scanning protein, DisA, N-terminal TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 SUPERFAMILY SSF143597 46 243 4.45E-64 T 22-04-2016 TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 PANTHER PTHR34185:SF1 7 255 2.5E-90 T 22-04-2016 TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 Gene3D G3DSA:3.40.1700.10 114 243 1.7E-51 T 22-04-2016 TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 PANTHER PTHR34185 7 255 2.5E-90 T 22-04-2016 TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 13 251 3.8E-76 T 22-04-2016 IPR014046 Diadenylate cyclase-like TRD_RS03155 4252e44ac3c3cf89fe0134c4df151ff3 259 PIRSF PIRSF004793 6 259 5.6E-85 T 22-04-2016 IPR014046 Diadenylate cyclase-like TRD_RS13520 3c982f362432f051fea5a66013931004 100 PANTHER PTHR24362 10 98 3.0E-16 T 22-04-2016 TRD_RS13520 3c982f362432f051fea5a66013931004 100 SUPERFAMILY SSF56112 9 98 6.41E-16 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS13520 3c982f362432f051fea5a66013931004 100 Pfam PF00069 Protein kinase domain 8 98 3.3E-9 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 TRD_RS13520 3c982f362432f051fea5a66013931004 100 Gene3D G3DSA:3.30.200.20 9 51 1.5E-8 T 22-04-2016 TRD_RS13520 3c982f362432f051fea5a66013931004 100 Gene3D G3DSA:1.10.510.10 52 98 1.1E-5 T 22-04-2016 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 Pfam PF01479 S4 domain 7 48 2.7E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 Pfam PF01728 FtsJ-like methyltransferase 61 240 3.0E-22 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 SUPERFAMILY SSF53335 57 257 6.23E-27 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS03670 a830d3961634a121a25f69166639d48d 265 PANTHER PTHR32319:SF0 1 262 7.7E-131 T 22-04-2016 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 PIRSF PIRSF005578 1 259 1.4E-103 T 22-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 PANTHER PTHR32319 1 262 7.7E-131 T 22-04-2016 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 Gene3D G3DSA:3.10.290.10 7 90 3.6E-20 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 Gene3D G3DSA:3.40.50.150 91 175 4.1E-6 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS03670 a830d3961634a121a25f69166639d48d 265 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 8 235 9.8E-75 T 22-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 SUPERFAMILY SSF55174 6 56 2.69E-10 T 22-04-2016 TRD_RS03670 a830d3961634a121a25f69166639d48d 265 SMART SM00363 6 70 1.9E-7 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 195 208 5.2E-10 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 150 169 5.2E-10 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 385 401 5.2E-10 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 386 396 - T 22-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 199 209 - T 22-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PANTHER PTHR10795:SF419 2 106 7.8E-34 T 22-04-2016 TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PANTHER PTHR10795:SF419 122 421 7.8E-34 T 22-04-2016 TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 SUPERFAMILY SSF52743 131 447 2.75E-56 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 Gene3D G3DSA:3.40.50.200 119 443 1.0E-60 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 Pfam PF00082 Subtilase family 154 423 1.2E-26 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PANTHER PTHR10795 2 106 7.8E-34 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS07425 842b7df77ae354658cb441f6b29851b6 451 PANTHER PTHR10795 122 421 7.8E-34 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 PANTHER PTHR30627:SF1 7 567 1.1E-168 T 22-04-2016 TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Gene3D G3DSA:3.90.1310.10 121 222 5.3E-27 T 22-04-2016 TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 SUPERFAMILY SSF56519 49 215 6.41E-39 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 SUPERFAMILY SSF56601 167 564 1.99E-94 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 PANTHER PTHR30627 7 567 1.1E-168 T 22-04-2016 TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Pfam PF00905 Penicillin binding protein transpeptidase domain 241 550 8.1E-77 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Pfam PF03717 Penicillin-binding Protein dimerisation domain 52 197 1.6E-16 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS00270 7d3bea9cd56cc4d5a05fc469ce8e2bf7 575 Gene3D G3DSA:3.40.710.10 223 555 2.4E-94 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 SUPERFAMILY SSF54373 223 325 8.63E-18 T 22-04-2016 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 SUPERFAMILY SSF51905 6 223 7.77E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 SUPERFAMILY SSF51905 326 384 7.77E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 Pfam PF01266 FAD dependent oxidoreductase 8 365 2.8E-51 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.50.50.60 4 84 1.3E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.50.50.60 143 222 1.3E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.50.50.60 326 383 1.3E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.30.9.10 223 325 8.8E-33 T 22-04-2016 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 Gene3D G3DSA:3.30.9.10 89 142 8.8E-33 T 22-04-2016 TRD_RS04050 f8e6e86135cf71ef140ee69dbd2e5337 409 PANTHER PTHR13847 1 404 2.1E-71 T 22-04-2016 TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 204 1.0E-26 T 22-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 PANTHER PTHR11124 111 245 1.0E-48 T 22-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 PANTHER PTHR11124 1 72 1.0E-48 T 22-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 PANTHER PTHR11124:SF2 111 245 1.0E-48 T 22-04-2016 TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 PANTHER PTHR11124:SF2 1 72 1.0E-48 T 22-04-2016 TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 PIRSF PIRSF000883 1 247 6.1E-51 T 22-04-2016 IPR011152 Phosphoesterase MJ0912 TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 SUPERFAMILY SSF56300 1 239 3.66E-52 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS09010 a9fc288a62fe6f01771cbee91ca6ef36 251 Gene3D G3DSA:3.60.21.10 1 247 8.9E-64 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 SUPERFAMILY SSF56053 84 178 6.91E-35 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 PANTHER PTHR11655 1 182 2.8E-92 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 37.84 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 SUPERFAMILY SSF56053 1 83 2.75E-24 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 Gene3D G3DSA:3.90.930.12 2 83 5.7E-29 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 Pfam PF00347 Ribosomal protein L6 92 165 8.9E-17 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 Pfam PF00347 Ribosomal protein L6 11 83 1.4E-16 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 PRINTS PR00059 Ribosomal protein L6 signature 100 116 9.6E-34 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 PRINTS PR00059 Ribosomal protein L6 signature 72 97 9.6E-34 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 PRINTS PR00059 Ribosomal protein L6 signature 142 163 9.6E-34 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 1.3E-72 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 Gene3D G3DSA:3.90.930.12 84 178 4.6E-38 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 PIRSF PIRSF002162 1 178 5.3E-42 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS04455 02b50c8449b3ab8ca7830f39cfa6c001 184 PANTHER PTHR11655:SF14 1 182 2.8E-92 T 22-04-2016 TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 PANTHER PTHR11921:SF22 87 665 3.3E-146 T 22-04-2016 TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 SUPERFAMILY SSF103501 12 252 5.1E-8 T 22-04-2016 IPR023234 NarG-like domain TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 Gene3D G3DSA:1.20.950.20 65 246 3.5E-7 T 22-04-2016 TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 PANTHER PTHR11921 87 665 3.3E-146 T 22-04-2016 TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 284 295 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 SUPERFAMILY SSF46548 270 374 1.57E-16 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 345 356 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 Pfam PF13183 4Fe-4S dicluster domain 281 359 2.5E-10 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 Gene3D G3DSA:1.10.1060.10 262 375 5.4E-22 T 22-04-2016 TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 Pfam PF02754 Cysteine-rich domain 436 509 0.0028 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS00710 371ddb4914bec986ebf86e90352e9d56 678 Pfam PF02754 Cysteine-rich domain 549 631 2.7E-11 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 Gene3D G3DSA:3.40.50.1950 6 184 2.2E-57 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 Pfam PF02441 Flavoprotein 8 136 2.4E-30 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 Gene3D G3DSA:3.40.50.10300 186 398 2.0E-78 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 5 390 7.2E-125 T 22-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 PANTHER PTHR14359:SF20 3 399 1.3E-167 T 22-04-2016 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 SUPERFAMILY SSF52507 4 182 1.44E-54 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 365 6.4E-66 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 SUPERFAMILY SSF102645 186 395 2.49E-67 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 TRD_RS01610 6a01513b7d24ce86a5b46475c9223eef 403 PANTHER PTHR14359 3 399 1.3E-167 T 22-04-2016 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 SUPERFAMILY SSF48019 252 356 5.36E-7 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 5 305 6.2E-117 T 22-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 239 327 4.2E-8 T 22-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 Gene3D G3DSA:1.10.8.60 168 248 1.7E-24 T 22-04-2016 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 PANTHER PTHR11669 5 443 6.6E-149 T 22-04-2016 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 SUPERFAMILY SSF52540 35 227 2.04E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 Gene3D G3DSA:3.40.50.300 15 167 1.0E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 PANTHER PTHR11669:SF0 5 443 6.6E-149 T 22-04-2016 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 Gene3D G3DSA:1.20.272.10 251 333 4.8E-7 T 22-04-2016 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 SMART SM00382 37 180 2.9E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 125 143 7.9E-6 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 7.9E-6 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS08235 e4bc31ffa93475b93aba4213b390fbd5 562 Pfam PF13177 DNA polymerase III, delta subunit 20 179 5.0E-42 T 22-04-2016 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 PANTHER PTHR11693 6 294 4.9E-109 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 Hamap MF_00815 ATP synthase gamma chain [atpG]. 4 292 34.775 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 7 292 6.8E-97 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 Gene3D G3DSA:1.10.287.80 22 63 4.8E-34 T 22-04-2016 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 Gene3D G3DSA:1.10.287.80 207 240 4.8E-34 T 22-04-2016 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 SUPERFAMILY SSF52943 7 292 2.49E-87 T 22-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 Gene3D G3DSA:1.10.287.80 241 285 2.8E-24 T 22-04-2016 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 80 99 6.5E-34 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 174 191 6.5E-34 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 239 258 6.5E-34 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 PRINTS PR00126 ATP synthase gamma subunit signature 270 291 6.5E-34 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 Gene3D G3DSA:3.40.1380.10 73 200 4.8E-38 T 22-04-2016 TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 278 291 - T 22-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site TRD_RS05740 cef61cb444e9a248da6a01732fcaacf4 296 Pfam PF00231 ATP synthase 8 292 4.4E-91 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 PANTHER PTHR30070 4 216 2.8E-28 T 22-04-2016 TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 159 178 9.3E-7 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 80 103 9.3E-7 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 57 74 9.3E-7 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 PANTHER PTHR30070:SF1 4 216 2.8E-28 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 PIRSF PIRSF002764 1 220 9.1E-37 T 22-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria TRD_RS05685 0f11e8629caffe8a8249c84d1e28e3d5 222 Pfam PF03379 CcmB protein 8 216 1.5E-27 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS09120 afea58dbfb7e09b21a48bc81adc6c105 614 SUPERFAMILY SSF53850 91 603 9.95E-76 T 22-04-2016 TRD_RS09120 afea58dbfb7e09b21a48bc81adc6c105 614 Gene3D G3DSA:3.10.105.10 355 569 4.9E-38 T 22-04-2016 TRD_RS09120 afea58dbfb7e09b21a48bc81adc6c105 614 Gene3D G3DSA:3.40.190.10 197 354 9.1E-18 T 22-04-2016 TRD_RS09120 afea58dbfb7e09b21a48bc81adc6c105 614 Gene3D G3DSA:3.90.76.10 107 196 4.2E-18 T 22-04-2016 TRD_RS09120 afea58dbfb7e09b21a48bc81adc6c105 614 PANTHER PTHR30290 3 614 8.0E-74 T 22-04-2016 TRD_RS09120 afea58dbfb7e09b21a48bc81adc6c105 614 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 118 509 2.6E-50 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS07350 3557ffc1588722ee1e0daaf7af4dbaa7 343 Gene3D G3DSA:3.40.50.720 2 184 2.2E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07350 3557ffc1588722ee1e0daaf7af4dbaa7 343 PANTHER PTHR21363:SF0 1 290 1.8E-63 T 22-04-2016 TRD_RS07350 3557ffc1588722ee1e0daaf7af4dbaa7 343 PANTHER PTHR21363 1 290 1.8E-63 T 22-04-2016 TRD_RS07350 3557ffc1588722ee1e0daaf7af4dbaa7 343 SUPERFAMILY SSF48179 178 285 4.65E-27 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 TRD_RS07350 3557ffc1588722ee1e0daaf7af4dbaa7 343 SUPERFAMILY SSF51735 3 173 2.31E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07350 3557ffc1588722ee1e0daaf7af4dbaa7 343 Pfam PF02153 Prephenate dehydrogenase 27 274 8.9E-56 T 22-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PANTHER PTHR11573 4 569 4.1E-242 T 22-04-2016 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 Gene3D G3DSA:3.20.70.20 4 455 6.4E-141 T 22-04-2016 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 Gene3D G3DSA:3.20.70.20 516 560 6.4E-141 T 22-04-2016 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 Pfam PF02867 Ribonucleotide reductase, barrel domain 89 557 5.9E-128 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 163 182 1.7E-30 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 267 278 1.7E-30 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 411 438 1.7E-30 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 304 327 1.7E-30 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 370 393 1.7E-30 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PRINTS PR01183 Ribonucleotide reductase large chain signature 342 364 1.7E-30 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 12 567 1.1E-180 T 22-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 PANTHER PTHR11573:SF3 4 569 4.1E-242 T 22-04-2016 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 SUPERFAMILY SSF51998 87 461 2.56E-129 T 22-04-2016 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 SUPERFAMILY SSF51998 493 568 2.56E-129 T 22-04-2016 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 SUPERFAMILY SSF48168 11 86 9.29E-13 T 22-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 TRD_RS04350 3dc04d021e3ea0b35afc0874375f0725 589 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 6 85 4.6E-22 T 22-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 SUPERFAMILY SSF75217 77 243 1.41E-45 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 PANTHER PTHR30027:SF3 6 249 3.2E-64 T 22-04-2016 TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 8 243 5.9E-45 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 Pfam PF04452 RNA methyltransferase 21 241 3.0E-59 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 PIRSF PIRSF015601 5 245 2.7E-57 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 PANTHER PTHR30027 6 249 3.2E-64 T 22-04-2016 TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 SUPERFAMILY SSF88697 6 70 7.62E-12 T 22-04-2016 IPR015947 PUA-like domain TRD_RS01585 6078748b4eea45924d5a6890765f3d2f 265 Gene3D G3DSA:3.40.1280.10 6 244 7.8E-72 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 Pfam PF00348 Polyprenyl synthetase 55 296 1.7E-61 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 Gene3D G3DSA:1.10.600.10 41 338 6.8E-85 T 22-04-2016 IPR008949 Isoprenoid synthase domain TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 223 235 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 94 108 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 PANTHER PTHR12001:SF23 57 346 3.3E-84 T 22-04-2016 TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 PANTHER PTHR12001 57 346 3.3E-84 T 22-04-2016 IPR017446 Polyprenyl synthetase-related TRD_RS05585 f54795eb9afabb5e828839ace18f49c8 346 SUPERFAMILY SSF48576 14 338 2.88E-80 T 22-04-2016 IPR008949 Isoprenoid synthase domain TRD_RS08380 e1f90720f0f142efc009b400a4668d9f 224 Gene3D G3DSA:3.40.50.2020 92 201 3.5E-31 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS08380 e1f90720f0f142efc009b400a4668d9f 224 Gene3D G3DSA:3.40.50.2020 2 60 3.5E-31 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS08380 e1f90720f0f142efc009b400a4668d9f 224 SUPERFAMILY SSF53271 1 208 9.05E-49 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS08380 e1f90720f0f142efc009b400a4668d9f 224 PANTHER PTHR31299 1 208 2.0E-78 T 22-04-2016 TRD_RS08380 e1f90720f0f142efc009b400a4668d9f 224 Pfam PF00156 Phosphoribosyl transferase domain 9 175 3.7E-26 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 PRINTS PR01438 Universal stress protein signature 248 260 1.5E-13 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 PRINTS PR01438 Universal stress protein signature 266 288 1.5E-13 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 PRINTS PR01438 Universal stress protein signature 159 177 1.5E-13 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 Pfam PF00582 Universal stress protein family 21 147 1.1E-13 T 22-04-2016 IPR006016 UspA GO:0006950 TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 Pfam PF00582 Universal stress protein family 160 286 1.5E-23 T 22-04-2016 IPR006016 UspA GO:0006950 TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 PANTHER PTHR31964 144 289 6.8E-23 T 22-04-2016 TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 SUPERFAMILY SSF52402 6 150 5.27E-21 T 22-04-2016 TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 Gene3D G3DSA:3.40.50.620 153 289 4.4E-27 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 Gene3D G3DSA:3.40.50.620 21 147 1.3E-20 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 SUPERFAMILY SSF52402 160 289 1.93E-27 T 22-04-2016 TRD_RS00375 a9cc9afcf367960d5260f81e22818a61 301 PANTHER PTHR31964:SF45 144 289 6.8E-23 T 22-04-2016 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Pfam PF07516 SecA Wing and Scaffold domain 594 802 1.1E-58 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Gene3D G3DSA:3.40.50.300 375 422 4.9E-120 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Gene3D G3DSA:3.40.50.300 2 249 4.9E-120 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Pfam PF02810 SEC-C motif 835 853 3.7E-10 T 22-04-2016 IPR004027 SEC-C motif TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SUPERFAMILY SSF52540 3 249 1.6E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SUPERFAMILY SSF52540 374 421 1.6E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SUPERFAMILY SSF81767 248 374 4.71E-43 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SUPERFAMILY SSF52540 422 595 2.42E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Gene3D G3DSA:3.40.50.300 423 596 8.7E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SMART SM00958 249 364 6.8E-64 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Gene3D G3DSA:3.10.450.50 827 853 5.1E-10 T 22-04-2016 IPR032710 NTF2-like domain TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Gene3D G3DSA:3.90.1440.10 252 374 7.8E-47 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 804 20.163 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Pfam PF01043 SecA preprotein cross-linking domain 254 364 3.4E-39 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PANTHER PTHR30612 181 856 0.0 T 22-04-2016 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PANTHER PTHR30612 1 158 0.0 T 22-04-2016 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SMART SM00957 5 408 5.1E-274 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 SUPERFAMILY SSF81886 597 843 2.88E-69 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Gene3D G3DSA:1.10.3060.10 625 802 1.4E-48 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 ProSitePatterns PS01312 SecA family signature. 506 521 - T 22-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PRINTS PR00906 SecA protein signature 345 367 5.6E-57 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PRINTS PR00906 SecA protein signature 100 114 5.6E-57 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PRINTS PR00906 SecA protein signature 382 399 5.6E-57 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PRINTS PR00906 SecA protein signature 419 432 5.6E-57 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PRINTS PR00906 SecA protein signature 62 86 5.6E-57 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 PRINTS PR00906 SecA protein signature 116 126 5.6E-57 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 TRD_RS01870 a701d65aa631965ed8c908d73193201e 863 Pfam PF07517 SecA DEAD-like domain 5 408 1.6E-127 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 Pfam PF02142 MGS-like domain 13 126 2.2E-19 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2 504 1.1E-168 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 1 504 38.636 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 Pfam PF01808 AICARFT/IMPCHase bienzyme 131 437 1.1E-95 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 SMART SM00798 131 439 8.1E-128 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 Gene3D G3DSA:3.40.140.20 239 350 1.1E-35 T 22-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 Gene3D G3DSA:3.40.50.1380 2 185 1.3E-66 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 SUPERFAMILY SSF52335 2 191 3.4E-56 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 PIRSF PIRSF000414 1 504 8.8E-180 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 PANTHER PTHR11692:SF2 1 504 9.2E-241 T 22-04-2016 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 SUPERFAMILY SSF53927 203 504 9.53E-109 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 Gene3D G3DSA:3.40.140.20 357 494 3.0E-48 T 22-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 PANTHER PTHR11692 1 504 9.2E-241 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 TRD_RS03980 6527a5e7004982bd5333f08208ef0e9f 504 SMART SM00851 12 126 2.4E-42 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS02135 7b2f929ed0c5d5140084ae9510f83adf 197 Gene3D G3DSA:1.10.760.10 83 197 1.0E-22 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS02135 7b2f929ed0c5d5140084ae9510f83adf 197 PANTHER PTHR40394:SF2 34 195 2.2E-15 T 22-04-2016 TRD_RS02135 7b2f929ed0c5d5140084ae9510f83adf 197 PANTHER PTHR40394 34 195 2.2E-15 T 22-04-2016 TRD_RS02135 7b2f929ed0c5d5140084ae9510f83adf 197 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 93 191 3.0E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS02135 7b2f929ed0c5d5140084ae9510f83adf 197 SUPERFAMILY SSF46626 83 196 7.3E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS09280 045b96a3aa460a6a216477dcea26630e 490 SUPERFAMILY SSF81606 82 262 1.44E-7 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS09280 045b96a3aa460a6a216477dcea26630e 490 Gene3D G3DSA:3.60.40.10 99 214 3.4E-4 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 PANTHER PTHR10520 5 311 4.0E-118 T 22-04-2016 TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 Gene3D G3DSA:3.90.650.10 168 343 4.9E-50 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 5 333 1.0E-96 T 22-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 SUPERFAMILY SSF56042 168 343 9.24E-46 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 SUPERFAMILY SSF55326 5 163 1.27E-40 T 22-04-2016 TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 Pfam PF00586 AIR synthase related protein, N-terminal domain 56 161 1.7E-16 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 Gene3D G3DSA:3.30.1330.10 20 165 2.4E-44 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 4 344 35.839 T 22-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03965 d3c8c2d3138859fe6760d1c715f9b531 359 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 343 1.8E-26 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 SUPERFAMILY SSF56214 10 126 1.57E-27 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 11 125 7.5E-24 T 22-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 12 124 1.1E-18 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 Gene3D G3DSA:3.90.470.20 10 126 4.6E-37 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 15 125 3.0E-14 T 22-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 10 128 24.17 T 22-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS03730 92bb44bbfe77bfea048a7ed248fd1430 142 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 12 126 3.1E-26 T 22-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 SUPERFAMILY SSF52540 9 223 3.04E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 12 222 3.4E-76 T 22-04-2016 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 PANTHER PTHR30134 7 237 2.2E-105 T 22-04-2016 TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 Gene3D G3DSA:3.40.50.300 43 213 1.9E-12 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 PANTHER PTHR30134:SF2 7 237 2.2E-105 T 22-04-2016 TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 PIRSF PIRSF005624 5 233 2.0E-84 T 22-04-2016 TRD_RS08740 00e444d1afbbd6097dd99d525b2230af 245 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 39 200 4.4E-27 T 22-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 6 105 27.551 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 7 104 5.7E-45 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 Gene3D G3DSA:3.30.70.600 7 105 4.5E-43 T 22-04-2016 IPR027486 Ribosomal protein S10 domain TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 ProSitePatterns PS00361 Ribosomal protein S10 signature. 32 47 - T 22-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 Pfam PF00338 Ribosomal protein S10p/S20e 10 104 1.4E-36 T 22-04-2016 IPR027486 Ribosomal protein S10 domain TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 SMART SM01403 10 104 6.9E-58 T 22-04-2016 IPR027486 Ribosomal protein S10 domain TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 SUPERFAMILY SSF54999 8 105 2.09E-38 T 22-04-2016 IPR027486 Ribosomal protein S10 domain TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 PRINTS PR00971 Ribosomal protein S10 family signature 43 58 7.8E-20 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 PRINTS PR00971 Ribosomal protein S10 family signature 8 21 7.8E-20 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 PRINTS PR00971 Ribosomal protein S10 family signature 64 78 7.8E-20 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 TRD_RS04530 5c32222c25b5064b9fc9f8cec616074d 105 PANTHER PTHR11700 5 105 5.9E-51 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 Pfam PF01479 S4 domain 106 152 5.0E-22 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 PANTHER PTHR11831:SF4 1 216 4.8E-81 T 22-04-2016 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 SMART SM01390 3 104 7.2E-51 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 SUPERFAMILY SSF55174 3 216 6.93E-68 T 22-04-2016 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 216 37.13 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 104 4.6E-28 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 216 1.5E-71 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 ProSitePatterns PS00632 Ribosomal protein S4 signature. 103 127 - T 22-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 Gene3D G3DSA:3.10.290.10 108 202 9.2E-32 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 PANTHER PTHR11831 1 216 4.8E-81 T 22-04-2016 IPR022801 Ribosomal protein S4/S9 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 SMART SM00363 105 167 7.8E-20 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS04395 c406b0fb636b9c2fa3424d2c188f9a92 217 Gene3D G3DSA:1.10.1050.10 1 107 1.1E-39 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 PIRSF PIRSF000161 1 258 3.4E-72 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 PANTHER PTHR20836:SF0 1 256 4.5E-65 T 22-04-2016 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 258 28.615 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 SUPERFAMILY SSF51735 1 121 2.83E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 SUPERFAMILY SSF51735 229 257 2.83E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 144 161 - T 22-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 123 256 2.4E-33 T 22-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 120 9.3E-27 T 22-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 SUPERFAMILY SSF55347 122 229 2.4E-24 T 22-04-2016 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 257 3.2E-61 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 Gene3D G3DSA:3.40.50.720 1 157 2.1E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01910 c46d9d2831ef96d1c3e3a3db03b38401 258 PANTHER PTHR20836 1 256 4.5E-65 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PANTHER PTHR23429:SF0 21 514 3.2E-256 T 22-04-2016 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 Gene3D G3DSA:3.30.360.10 211 512 2.3E-126 T 22-04-2016 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 26 211 3.0E-63 T 22-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 201 207 - T 22-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 213 512 8.0E-122 T 22-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 Gene3D G3DSA:3.40.50.720 21 210 2.7E-70 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 SUPERFAMILY SSF55347 206 512 3.6E-120 T 22-04-2016 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 22 513 2.8E-201 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 22 513 91.534 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PIRSF PIRSF000110 2 514 4.7E-188 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 243 260 5.5E-51 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 352 378 5.5E-51 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 261 277 5.5E-51 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 167 180 5.5E-51 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 191 219 5.5E-51 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 PANTHER PTHR23429 21 514 3.2E-256 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 TRD_RS05315 edd2793b6d8f1f89c17c8211611f849c 514 SUPERFAMILY SSF51735 11 214 6.5E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 Pfam PF02195 ParB-like nuclease domain 27 116 8.5E-23 T 22-04-2016 IPR003115 ParB/Sulfiredoxin TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 25 198 8.1E-56 T 22-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 SUPERFAMILY SSF109709 110 218 2.41E-33 T 22-04-2016 TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 PANTHER PTHR33375 3 287 3.4E-96 T 22-04-2016 TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 Gene3D G3DSA:1.10.260.40 136 158 4.1E-4 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 Gene3D G3DSA:3.90.1530.10 24 122 1.7E-38 T 22-04-2016 TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 SUPERFAMILY SSF110849 25 119 2.49E-28 T 22-04-2016 IPR003115 ParB/Sulfiredoxin TRD_RS04860 e264cdb0a238dbe59b0e8d47414d68ce 293 SMART SM00470 26 117 3.1E-33 T 22-04-2016 IPR003115 ParB/Sulfiredoxin TRD_RS01345 f8e2d88867db787c141932da6aa3aceb 258 Gene3D G3DSA:3.90.226.10 3 252 1.7E-76 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS01345 f8e2d88867db787c141932da6aa3aceb 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 2.3E-53 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 TRD_RS01345 f8e2d88867db787c141932da6aa3aceb 258 PANTHER PTHR11941 13 255 1.7E-76 T 22-04-2016 TRD_RS01345 f8e2d88867db787c141932da6aa3aceb 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 TRD_RS01345 f8e2d88867db787c141932da6aa3aceb 258 SUPERFAMILY SSF52096 3 257 5.13E-75 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 790 19.723 T 22-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 SMART SM00463 713 791 4.4E-19 T 22-04-2016 IPR002625 Smr domain TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 Pfam PF01713 Smr domain 716 790 1.0E-19 T 22-04-2016 IPR002625 Smr domain TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 SMART SM00533 9 324 8.2E-16 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 SUPERFAMILY SSF160443 714 790 1.7E-11 T 22-04-2016 IPR002625 Smr domain TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 419 435 - T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 Pfam PF00488 MutS domain V 340 521 4.5E-37 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 PANTHER PTHR11361:SF14 30 610 9.2E-213 T 22-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 PIRSF PIRSF005814 1 791 3.6E-235 T 22-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 SMART SM00534 337 522 4.3E-80 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 SUPERFAMILY SSF52540 305 522 5.05E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 PANTHER PTHR11361 30 610 9.2E-213 T 22-04-2016 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 Gene3D G3DSA:3.40.50.300 311 522 8.8E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 SUPERFAMILY SSF48334 36 287 1.7E-22 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 TRD_RS03060 2e1357951a96bae6ceaabdc0a131d255 792 TIGRFAM TIGR01069 mutS2: MutS2 family protein 1 791 2.7E-199 T 22-04-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 PANTHER PTHR32268 14 365 7.1E-162 T 22-04-2016 TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 Gene3D G3DSA:3.40.50.1820 20 364 2.4E-37 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 PIRSF PIRSF000443 5 366 1.8E-140 T 22-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 PANTHER PTHR32268:SF11 14 365 7.1E-162 T 22-04-2016 TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 SUPERFAMILY SSF53474 14 364 1.45E-104 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 Pfam PF00561 alpha/beta hydrolase fold 44 351 4.3E-43 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 2 365 45.848 T 22-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 TRD_RS01705 a4d8394de2b962f50b7bcb8aca0d9c1f 366 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 15 363 6.6E-138 T 22-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 SUPERFAMILY SSF51621 517 875 4.19E-131 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 455 466 - T 22-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.50.30.10 407 511 2.7E-40 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 304 363 8.0E-12 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 297 4.8E-45 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 9 875 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.20.20.60 537 875 1.3E-142 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:1.20.80.30 117 203 3.7E-33 T 22-04-2016 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:1.10.189.10 349 406 4.3E-32 T 22-04-2016 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 PANTHER PTHR22931 8 879 0.0 T 22-04-2016 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 PIRSF PIRSF000853 7 881 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 765 783 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.30.470.20 249 348 3.0E-36 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 PANTHER PTHR22931:SF9 8 879 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.30.1490.20 205 248 1.2E-58 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Gene3D G3DSA:3.30.1490.20 9 116 1.2E-58 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF00391 PEP-utilising enzyme, mobile domain 427 508 8.8E-27 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 524 873 1.3E-94 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 SUPERFAMILY SSF52009 391 517 5.36E-39 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 TRD_RS01435 ac37d708a08f483d2d1aed849cf62bcf 882 SUPERFAMILY SSF56059 9 386 1.77E-144 T 22-04-2016 TRD_RS07910 c38d336678ce5efc898d41ac9b6f36b6 140 SUPERFAMILY SSF46626 9 131 4.95E-5 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS07910 c38d336678ce5efc898d41ac9b6f36b6 140 SMART SM01235 10 138 2.0E-58 T 22-04-2016 IPR025992 Haem-binding domain TRD_RS07910 c38d336678ce5efc898d41ac9b6f36b6 140 Gene3D G3DSA:1.10.760.10 12 131 1.0E-4 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS07910 c38d336678ce5efc898d41ac9b6f36b6 140 Pfam PF14376 Haem-binding domain 25 133 9.4E-32 T 22-04-2016 IPR025992 Haem-binding domain TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 Gene3D G3DSA:2.30.30.30 133 193 3.9E-26 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 Gene3D G3DSA:3.30.70.940 24 131 2.3E-45 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 PRINTS PR00338 Transcription termination factor NUSG signature 77 89 8.4E-19 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 PRINTS PR00338 Transcription termination factor NUSG signature 170 186 8.4E-19 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 PRINTS PR00338 Transcription termination factor NUSG signature 152 167 8.4E-19 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 SUPERFAMILY SSF82679 24 128 1.44E-39 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 Pfam PF02357 Transcription termination factor nusG 24 126 2.9E-28 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 PANTHER PTHR30265 24 193 2.2E-75 T 22-04-2016 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 SUPERFAMILY SSF50104 140 193 2.41E-17 T 22-04-2016 IPR008991 Translation protein SH3-like domain TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 22 194 25.235 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 Pfam PF00467 KOW motif 143 175 4.3E-8 T 22-04-2016 IPR005824 KOW TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 SMART SM00738 22 130 1.5E-45 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 25 193 5.9E-64 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 TRD_RS03115 9b40f4da03ee1582715e208331c3fe53 195 SMART SM00739 140 167 8.9E-6 T 22-04-2016 IPR005824 KOW TRD_RS02815 4bb1e40947f0313ddbe319a1cd957db2 248 SUPERFAMILY SSF49879 116 243 3.44E-31 T 22-04-2016 IPR008984 SMAD/FHA domain GO:0005515 TRD_RS02815 4bb1e40947f0313ddbe319a1cd957db2 248 Pfam PF12401 Protein of unknown function (DUF2662) 5 118 5.2E-28 T 22-04-2016 IPR022128 Protein of unknown function DUF3662 TRD_RS02815 4bb1e40947f0313ddbe319a1cd957db2 248 PANTHER PTHR23308 151 237 2.9E-21 T 22-04-2016 TRD_RS02815 4bb1e40947f0313ddbe319a1cd957db2 248 Gene3D G3DSA:2.60.200.20 151 245 2.4E-27 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS02815 4bb1e40947f0313ddbe319a1cd957db2 248 SMART SM00240 173 223 2.1E-15 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS02815 4bb1e40947f0313ddbe319a1cd957db2 248 Pfam PF00498 FHA domain 174 237 6.0E-18 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 ProSitePatterns PS01128 Shikimate kinase signature. 58 83 - T 22-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 PANTHER PTHR21090 175 547 3.8E-131 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Pfam PF01761 3-dehydroquinate synthase 250 511 4.7E-89 T 22-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Gene3D G3DSA:3.40.50.300 3 174 4.5E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 150 544 36.41 T 22-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 5 20 1.3E-16 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 29 42 1.3E-16 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 75 84 1.3E-16 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 96 113 1.3E-16 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 PRINTS PR01100 Shikimate kinase family signature 57 65 1.3E-16 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 SUPERFAMILY SSF52540 4 175 5.83E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Pfam PF01202 Shikimate kinase 11 172 3.9E-41 T 22-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 SUPERFAMILY SSF56796 194 541 1.15E-94 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Hamap MF_00109 Shikimate kinase [aroK]. 2 173 25.288 T 22-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 195 535 1.0E-101 T 22-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Gene3D G3DSA:3.40.50.1970 193 354 7.4E-59 T 22-04-2016 TRD_RS13545 ab480d1037ff4913d25fd3ab410a32d7 562 Gene3D G3DSA:1.20.1090.10 355 542 9.8E-52 T 22-04-2016 TRD_RS06315 ed938bd0eb3349eeda13521bbd109b25 188 PANTHER PTHR30353 1 184 6.6E-51 T 22-04-2016 IPR032818 DedA family TRD_RS06315 ed938bd0eb3349eeda13521bbd109b25 188 Pfam PF09335 SNARE associated Golgi protein 30 155 7.3E-19 T 22-04-2016 IPR032816 SNARE associated Golgi protein TRD_RS06315 ed938bd0eb3349eeda13521bbd109b25 188 PANTHER PTHR30353:SF13 1 184 6.6E-51 T 22-04-2016 TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 SUPERFAMILY SSF48371 73 298 3.96E-31 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 193 222 310.0 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 117 158 360.0 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 255 284 35.0 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 SMART SM00567 E-Z type HEAT repeats 224 253 3.5E-4 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 PANTHER PTHR12697 79 132 1.9E-12 T 22-04-2016 TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 PANTHER PTHR12697 150 298 1.9E-12 T 22-04-2016 TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 Gene3D G3DSA:1.25.10.10 79 298 4.4E-28 T 22-04-2016 IPR011989 Armadillo-like helical TRD_RS04265 8ab44a263f22261ba4fc99122f815219 311 Pfam PF13646 HEAT repeats 212 297 1.1E-17 T 22-04-2016 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 SUPERFAMILY SSF109755 9 220 7.74E-70 T 22-04-2016 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 PANTHER PTHR10010:SF14 6 215 1.1E-72 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 PANTHER PTHR10010 6 215 1.1E-72 T 22-04-2016 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 Gene3D G3DSA:1.20.58.220 8 111 4.6E-29 T 22-04-2016 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 Pfam PF01895 PhoU domain 21 107 3.4E-21 T 22-04-2016 IPR026022 PhoU domain TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 Pfam PF01895 PhoU domain 123 208 6.7E-21 T 22-04-2016 IPR026022 PhoU domain TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 PIRSF PIRSF003107 2 219 2.1E-72 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 Gene3D G3DSA:1.20.58.220 121 215 1.4E-30 T 22-04-2016 TRD_RS08530 db739df0dec760fee090e31a0bded8ef 238 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 214 2.5E-65 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 162 182 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 Pfam PF01938 TRAM domain 388 446 6.9E-12 T 22-04-2016 IPR002792 TRAM domain TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 21 447 65.411 T 22-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 Pfam PF00919 Uncharacterized protein family UPF0004 22 121 4.8E-25 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 Pfam PF04055 Radical SAM superfamily 163 334 2.5E-35 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 PANTHER PTHR11918 7 446 3.9E-155 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 SMART SM00729 158 373 4.7E-66 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 SUPERFAMILY SSF102114 143 382 5.62E-67 T 22-04-2016 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 PANTHER PTHR11918:SF43 7 446 3.9E-155 T 22-04-2016 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 Gene3D G3DSA:3.80.30.20 158 389 5.9E-85 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 22 443 4.0E-145 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 TRD_RS01640 326349ed2d048adf5d4018c0cf2dab34 458 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 22 444 1.2E-131 T 22-04-2016 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 PRINTS PR00354 7Fe ferredoxin signature 37 54 1.1E-13 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.1E-13 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.1E-13 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 PANTHER PTHR11938:SF82 1 82 3.6E-22 T 22-04-2016 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 42 53 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 PANTHER PTHR11938 1 82 3.6E-22 T 22-04-2016 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 Pfam PF00037 4Fe-4S binding domain 36 58 1.9E-9 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 Gene3D G3DSA:3.30.70.20 3 80 2.1E-20 T 22-04-2016 TRD_RS06675 e1418ac9609de13bac9fdcffdb607db2 83 SUPERFAMILY SSF54862 3 64 6.52E-23 T 22-04-2016 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Gene3D G3DSA:3.40.50.2300 1 120 2.1E-41 T 22-04-2016 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 SMART SM00862 145 219 3.7E-25 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 PANTHER PTHR26402:SF50 2 219 9.8E-82 T 22-04-2016 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Gene3D G3DSA:1.10.10.10 126 220 6.1E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 SUPERFAMILY SSF52172 1 177 6.26E-44 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Pfam PF00072 Response regulator receiver domain 4 113 2.2E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 SMART SM00448 2 112 1.9E-44 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 PANTHER PTHR26402 2 219 9.8E-82 T 22-04-2016 TRD_RS05955 e8188a42dc64fc95a7dbd5b9c0c808bf 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 2.7E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 Pfam PF00355 Rieske [2Fe-2S] domain 35 124 2.1E-20 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 SUPERFAMILY SSF55961 171 371 4.32E-40 T 22-04-2016 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PANTHER PTHR21266 11 371 3.1E-89 T 22-04-2016 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PANTHER PTHR21266:SF2 11 371 3.1E-89 T 22-04-2016 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 Gene3D G3DSA:3.90.380.10 142 365 1.5E-18 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 93 113 4.6E-28 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 134 160 4.6E-28 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 49 64 4.6E-28 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 178 200 4.6E-28 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 19 44 4.6E-28 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 70 90 4.6E-28 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 SUPERFAMILY SSF50022 11 150 1.7E-48 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 Gene3D G3DSA:2.102.10.10 33 141 2.1E-37 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 TRD_RS00585 8321bbeab77174227551af9c9a89a2df 378 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 180 368 1.2E-44 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 TRD_RS08525 570cd761a2207aad443e34fa04cd2b24 91 PANTHER PTHR37828:SF1 1 85 3.7E-13 T 22-04-2016 TRD_RS08525 570cd761a2207aad443e34fa04cd2b24 91 Pfam PF03795 YCII-related domain 5 83 1.4E-14 T 22-04-2016 IPR005545 YCII-related TRD_RS08525 570cd761a2207aad443e34fa04cd2b24 91 PANTHER PTHR37828 1 85 3.7E-13 T 22-04-2016 TRD_RS08525 570cd761a2207aad443e34fa04cd2b24 91 SUPERFAMILY SSF54909 1 86 6.97E-22 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel TRD_RS08525 570cd761a2207aad443e34fa04cd2b24 91 Gene3D G3DSA:3.30.70.1060 12 86 9.4E-21 T 22-04-2016 TRD_RS03755 4a6bd982e12cc566ab9d15762f677ecf 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 9 230 2.0E-53 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 TRD_RS03755 4a6bd982e12cc566ab9d15762f677ecf 230 Pfam PF01168 Alanine racemase, N-terminal domain 11 230 2.1E-24 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 TRD_RS03755 4a6bd982e12cc566ab9d15762f677ecf 230 SUPERFAMILY SSF51419 4 229 9.95E-74 T 22-04-2016 IPR029066 PLP-binding barrel TRD_RS03755 4a6bd982e12cc566ab9d15762f677ecf 230 PIRSF PIRSF004848 1 230 4.6E-70 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 TRD_RS03755 4a6bd982e12cc566ab9d15762f677ecf 230 Gene3D G3DSA:3.20.20.10 3 230 9.1E-83 T 22-04-2016 IPR029066 PLP-binding barrel TRD_RS03755 4a6bd982e12cc566ab9d15762f677ecf 230 PANTHER PTHR10146 7 230 6.3E-85 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 Gene3D G3DSA:1.10.8.50 147 287 1.8E-50 T 22-04-2016 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 SUPERFAMILY SSF46946 145 235 1.44E-29 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 Gene3D G3DSA:3.20.190.10 2 146 2.1E-28 T 22-04-2016 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 SUPERFAMILY SSF57716 234 287 3.99E-14 T 22-04-2016 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 286 1.3E-73 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 287 38.014 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 ProSitePatterns PS01242 Zinc finger FPG-type signature. 262 286 - T 22-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 SUPERFAMILY SSF81624 2 151 3.4E-28 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 Pfam PF06827 Zinc finger found in FPG and IleRS 261 287 2.1E-11 T 22-04-2016 IPR010663 Zinc finger, FPG/IleRS-type TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 SMART SM01232 146 238 4.7E-46 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 SMART SM00898 2 132 6.6E-23 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 3.4E-29 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 PANTHER PTHR22993 1 287 1.3E-98 T 22-04-2016 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 PANTHER PTHR22993:SF15 1 287 1.3E-98 T 22-04-2016 TRD_RS08860 c8004f1f9396c1201a27caa0dd139cf7 289 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 146 235 2.9E-26 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF55681 127 309 3.25E-100 T 22-04-2016 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF55681 441 601 3.25E-100 T 22-04-2016 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Pfam PF01336 OB-fold nucleic acid binding domain 31 116 4.9E-18 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PANTHER PTHR22594 386 588 1.7E-248 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PANTHER PTHR22594 6 314 1.7E-248 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:3.30.930.10 149 293 2.8E-106 T 22-04-2016 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:3.30.930.10 431 600 2.8E-106 T 22-04-2016 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF50249 15 119 1.16E-32 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 14 580 35.776 T 22-04-2016 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:3.30.1360.30 294 430 7.9E-43 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Pfam PF02938 GAD domain 325 422 7.3E-23 T 22-04-2016 IPR029351 GAD domain TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 535 549 1.1E-20 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 491 507 1.1E-20 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 223 236 1.1E-20 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PRINTS PR01042 Aspartyl-tRNA synthetase signature 206 218 1.1E-20 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Pfam PF00152 tRNA synthetases class II (D, K and N) 134 575 3.6E-101 T 22-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 14 601 6.9E-229 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 Gene3D G3DSA:2.40.50.140 15 122 1.9E-38 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 SUPERFAMILY SSF55261 306 436 6.7E-36 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PANTHER PTHR22594:SF5 386 588 1.7E-248 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 TRD_RS03915 efc6361a0956ecd7694de8d1f22e4327 612 PANTHER PTHR22594:SF5 6 314 1.7E-248 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 442 517 1.0E-5 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 1243 1328 12.0 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 718 791 55.0 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 1344 1417 5.5E-6 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 805 875 47.0 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 1170 1241 59.0 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SMART SM00060 893 968 3.5E-7 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49899 1481 1610 1.85E-6 T 22-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 439 528 1.35E-13 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:3.60.21.10 171 432 1.9E-40 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS00680 95951a80686d9977e939f17589df160b 1617 Pfam PF00149 Calcineurin-like phosphoesterase 175 352 3.2E-10 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 1343 1428 2.27E-13 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 1260 1338 1.44E-15 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49265 892 983 1.44E-15 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF49899 582 710 1.74E-6 T 22-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain TRD_RS00680 95951a80686d9977e939f17589df160b 1617 SUPERFAMILY SSF56300 174 385 3.8E-35 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS00680 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.120.200 583 696 4.2E-4 T 22-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain TRD_RS00680 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 1342 1428 3.5E-16 T 22-04-2016 IPR013783 Immunoglobulin-like fold TRD_RS00680 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 891 978 9.7E-17 T 22-04-2016 IPR013783 Immunoglobulin-like fold TRD_RS00680 95951a80686d9977e939f17589df160b 1617 Gene3D G3DSA:2.60.40.10 441 526 5.8E-17 T 22-04-2016 IPR013783 Immunoglobulin-like fold TRD_RS00680 95951a80686d9977e939f17589df160b 1617 PANTHER PTHR22953 708 719 1.4E-19 T 22-04-2016 TRD_RS00680 95951a80686d9977e939f17589df160b 1617 PANTHER PTHR22953 167 383 1.4E-19 T 22-04-2016 TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 126 30.271 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 6 127 6.1E-51 T 22-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 Pfam PF01597 Glycine cleavage H-protein 8 127 3.6E-49 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 48 77 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 Gene3D G3DSA:2.40.50.100 7 127 9.5E-53 T 22-04-2016 TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 PANTHER PTHR11715 1 132 4.0E-69 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS03435 2313e0745fb08b7fe3008d8344eac6e0 132 SUPERFAMILY SSF51230 5 127 2.62E-46 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 SMART SM00994 9 49 1.6E-21 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 3 409 51.653 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 SUPERFAMILY SSF52540 62 396 6.35E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 386 1.2E-11 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 SMART SM00382 108 271 2.1E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Gene3D G3DSA:3.40.50.300 63 250 8.2E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Gene3D G3DSA:3.40.50.300 288 304 8.2E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Gene3D G3DSA:1.10.8.60 310 407 1.0E-32 T 22-04-2016 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 SUPERFAMILY SSF57716 10 46 5.7E-10 T 22-04-2016 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Pfam PF06689 ClpX C4-type zinc finger 11 48 1.7E-21 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 SMART SM01086 311 397 9.9E-28 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 PANTHER PTHR11262 9 411 1.6E-231 T 22-04-2016 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 168 183 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 Pfam PF07724 AAA domain (Cdc48 subfamily) 108 304 2.3E-50 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS05600 38786ad14228a77b48e5d1f3f321427a 421 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 405 2.9E-192 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 TRD_RS08805 5208c979e02086000ca440b4ba1ac796 399 PANTHER PTHR23517 15 391 2.1E-13 T 22-04-2016 TRD_RS08805 5208c979e02086000ca440b4ba1ac796 399 SUPERFAMILY SSF103473 15 386 3.53E-40 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS08805 5208c979e02086000ca440b4ba1ac796 399 Pfam PF07690 Major Facilitator Superfamily 20 264 2.8E-16 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS08805 5208c979e02086000ca440b4ba1ac796 399 Gene3D G3DSA:1.20.1250.20 16 192 1.6E-19 T 22-04-2016 TRD_RS08805 5208c979e02086000ca440b4ba1ac796 399 Gene3D G3DSA:1.20.1250.20 210 385 1.7E-14 T 22-04-2016 TRD_RS08810 6ae81ec086e30f071a0fdb185ca2bed0 345 Pfam PF01212 Beta-eliminating lyase 3 287 2.4E-86 T 22-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 TRD_RS08810 6ae81ec086e30f071a0fdb185ca2bed0 345 SUPERFAMILY SSF53383 1 340 1.08E-115 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS08810 6ae81ec086e30f071a0fdb185ca2bed0 345 PIRSF PIRSF017617 1 345 9.6E-133 T 22-04-2016 IPR023603 Threonine aldolase TRD_RS08810 6ae81ec086e30f071a0fdb185ca2bed0 345 PANTHER PTHR10289 1 341 1.9E-143 T 22-04-2016 TRD_RS08810 6ae81ec086e30f071a0fdb185ca2bed0 345 Gene3D G3DSA:3.90.1150.10 249 341 3.5E-33 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS08810 6ae81ec086e30f071a0fdb185ca2bed0 345 Gene3D G3DSA:3.40.640.10 1 248 4.4E-78 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 PANTHER PTHR13833:SF49 1 435 1.8E-118 T 22-04-2016 TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 SUPERFAMILY SSF101898 111 428 1.31E-29 T 22-04-2016 TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 Gene3D G3DSA:3.40.30.10 1 96 2.0E-20 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 Gene3D G3DSA:2.120.10.30 114 424 6.0E-45 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 PANTHER PTHR13833 1 435 1.8E-118 T 22-04-2016 TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 Pfam PF01436 NHL repeat 118 145 9.1E-5 T 22-04-2016 IPR001258 NHL repeat GO:0005515 TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 Pfam PF01436 NHL repeat 397 422 1.8E-4 T 22-04-2016 IPR001258 NHL repeat GO:0005515 TRD_RS06660 e4948e47bd618428c76ad2a34115bc0b 443 SUPERFAMILY SSF52833 2 90 3.95E-14 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Pfam PF13361 UvrD-like helicase C-terminal domain 318 661 4.3E-68 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:3.40.50.300 597 687 8.3E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:3.40.50.300 327 429 8.3E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 PANTHER PTHR11070 42 687 2.7E-215 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:3.40.50.300 232 326 6.1E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:3.40.50.300 42 150 6.1E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Pfam PF00580 UvrD/REP helicase N-terminal domain 50 312 3.0E-76 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:1.10.10.160 154 231 9.2E-21 T 22-04-2016 IPR013986 DExx box DNA helicase domain TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 SUPERFAMILY SSF52540 42 687 5.1E-177 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 Gene3D G3DSA:1.10.486.10 430 586 2.7E-32 T 22-04-2016 TRD_RS01430 f407df5904b95b06047402d6aba3d370 771 PANTHER PTHR11070:SF7 42 687 2.7E-215 T 22-04-2016 TRD_RS06435 4248c8d86d5d59eca61369471baaf8a2 457 SUPERFAMILY SSF141523 328 455 1.44E-23 T 22-04-2016 TRD_RS06435 4248c8d86d5d59eca61369471baaf8a2 457 PANTHER PTHR30582:SF2 329 456 7.3E-26 T 22-04-2016 TRD_RS06435 4248c8d86d5d59eca61369471baaf8a2 457 Gene3D G3DSA:2.40.440.10 331 455 7.9E-16 T 22-04-2016 TRD_RS06435 4248c8d86d5d59eca61369471baaf8a2 457 Pfam PF03734 L,D-transpeptidase catalytic domain 331 455 8.6E-16 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 TRD_RS06435 4248c8d86d5d59eca61369471baaf8a2 457 PANTHER PTHR30582 329 456 7.3E-26 T 22-04-2016 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 154 301 3.0E-8 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 SUPERFAMILY SSF51690 138 447 1.27E-103 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 PIRSF PIRSF000484 5 450 3.9E-131 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 SUPERFAMILY SSF54675 8 137 1.91E-37 T 22-04-2016 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 9 437 1.1E-155 T 22-04-2016 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 PANTHER PTHR11098:SF1 1 448 2.6E-159 T 22-04-2016 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 Gene3D G3DSA:3.20.140.10 6 379 2.6E-106 T 22-04-2016 TRD_RS04330 dbfee1e75464d951284236730af3ad9b 454 PANTHER PTHR11098 1 448 2.6E-159 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 TRD_RS06870 8cd97a639cc166de9ecd46452fdfd928 478 Gene3D G3DSA:3.40.309.10 263 445 1.1E-61 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 TRD_RS06870 8cd97a639cc166de9ecd46452fdfd928 478 PANTHER PTHR11699 1 477 7.4E-231 T 22-04-2016 TRD_RS06870 8cd97a639cc166de9ecd46452fdfd928 478 SUPERFAMILY SSF53720 3 475 7.33E-149 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS06870 8cd97a639cc166de9ecd46452fdfd928 478 PANTHER PTHR11699:SF108 1 477 7.4E-231 T 22-04-2016 TRD_RS06870 8cd97a639cc166de9ecd46452fdfd928 478 Gene3D G3DSA:3.40.605.10 4 262 1.3E-80 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 TRD_RS06870 8cd97a639cc166de9ecd46452fdfd928 478 Pfam PF00171 Aldehyde dehydrogenase family 15 468 1.2E-148 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 SUPERFAMILY SSF55681 152 490 2.59E-117 T 22-04-2016 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 Gene3D G3DSA:3.30.930.10 147 489 9.4E-121 T 22-04-2016 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PANTHER PTHR22594 1 491 3.4E-234 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 252 269 1.1E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 375 391 1.1E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 189 199 1.1E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 205 221 1.1E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 234 247 1.1E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 Pfam PF00152 tRNA synthetases class II (D, K and N) 153 490 2.9E-82 T 22-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 SUPERFAMILY SSF50249 2 145 4.29E-33 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04020 2b363ea9e827e071d92392240c410067 492 PANTHER PTHR22594:SF4 1 491 3.4E-234 T 22-04-2016 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 Gene3D G3DSA:2.40.50.140 4 145 6.6E-38 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04020 2b363ea9e827e071d92392240c410067 492 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 9 492 41.545 T 22-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 3 491 1.4E-185 T 22-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 TRD_RS04020 2b363ea9e827e071d92392240c410067 492 Pfam PF01336 OB-fold nucleic acid binding domain 58 135 3.9E-11 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 Gene3D G3DSA:3.30.1370.30 3 72 4.3E-23 T 22-04-2016 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 PANTHER PTHR11758 1 132 1.3E-56 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 Pfam PF00410 Ribosomal protein S8 5 132 1.1E-49 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 Gene3D G3DSA:3.30.1490.10 76 132 1.6E-29 T 22-04-2016 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 SUPERFAMILY SSF56047 3 132 2.62E-45 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 TRD_RS04460 4ae3b0fd72f1ee6bf9bd62f61007a9f1 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 31.975 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 298 2.5E-125 T 22-04-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 PANTHER PTHR11811:SF28 1 301 1.8E-162 T 22-04-2016 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 167 277 4.4E-21 T 22-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 Gene3D G3DSA:1.10.1040.10 169 290 8.6E-35 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 PANTHER PTHR11811 1 301 1.8E-162 T 22-04-2016 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 154 4.8E-43 T 22-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 Gene3D G3DSA:3.40.50.720 1 168 3.2E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 235 247 - T 22-04-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 SUPERFAMILY SSF48179 165 301 1.29E-41 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 8.96E-27 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 231 258 8.96E-27 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 156 184 8.96E-27 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 8.96E-27 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 SMART SM01350 167 306 8.6E-5 T 22-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 SUPERFAMILY SSF51735 1 155 1.44E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS05310 c52bb0b606fadb5365826237813c2ff9 307 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 22-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 62 76 4.6E-6 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 92 108 4.6E-6 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 21 35 4.6E-6 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Gene3D G3DSA:3.40.50.880 20 223 4.3E-63 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Pfam PF00958 GMP synthase C terminal domain 435 526 2.7E-43 T 22-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Gene3D G3DSA:3.40.50.620 224 402 2.3E-57 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 18 527 54.135 T 22-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Gene3D G3DSA:3.30.300.10 403 527 1.9E-53 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00097 Anthranilate synthase component II signature 178 191 6.7E-6 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00097 Anthranilate synthase component II signature 65 74 6.7E-6 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00097 Anthranilate synthase component II signature 92 103 6.7E-6 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Pfam PF02540 NAD synthase 217 255 9.3E-5 T 22-04-2016 IPR022310 NAD/GMP synthase TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 SUPERFAMILY SSF52402 194 448 2.65E-55 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PANTHER PTHR11922 2 524 1.7E-281 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 SUPERFAMILY SSF52317 19 238 1.72E-59 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 214 527 2.8E-150 T 22-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 21 205 4.3E-70 T 22-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00096 Glutamine amidotransferase superfamily signature 65 74 5.6E-8 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00096 Glutamine amidotransferase superfamily signature 92 103 5.6E-8 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PRINTS PR00096 Glutamine amidotransferase superfamily signature 178 191 5.6E-8 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 SUPERFAMILY SSF54810 407 527 1.44E-51 T 22-04-2016 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 Pfam PF00117 Glutamine amidotransferase class-I 23 201 7.5E-39 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 TRD_RS05520 7a460586f1e7b4750ed5982fd25fadd4 527 PANTHER PTHR11922:SF2 2 524 1.7E-281 T 22-04-2016 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SMART SM00490 836 920 5.5E-17 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF00270 DEAD/DEAH box helicase 615 772 1.1E-18 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF02559 CarD-like/TRCF domain 492 585 1.2E-23 T 22-04-2016 IPR003711 CarD-like/TRCF domain TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF141259 489 552 6.41E-19 T 22-04-2016 IPR003711 CarD-like/TRCF domain TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF03461 TRCF domain 1015 1097 2.4E-23 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SMART SM01058 490 586 6.2E-37 T 22-04-2016 IPR003711 CarD-like/TRCF domain TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF52540 792 1000 2.95E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SMART SM00982 1014 1112 1.5E-28 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.40.50.300 599 795 1.4E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SMART SM00487 610 800 3.6E-35 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.30.2060.10 149 227 1.8E-14 T 22-04-2016 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF52540 29 358 2.66E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 166 1087 0.0 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Gene3D G3DSA:3.40.50.300 796 973 7.7E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 PANTHER PTHR14025 400 1097 0.0 T 22-04-2016 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 51 1145 28.28 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF143517 1002 1115 4.71E-29 T 22-04-2016 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 Pfam PF00271 Helicase conserved C-terminal domain 815 919 3.0E-17 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 PANTHER PTHR14025:SF21 400 1097 0.0 T 22-04-2016 TRD_RS03070 c96e65bfe4279df838a308325fada0b3 1165 SUPERFAMILY SSF52540 534 794 8.89E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PANTHER PTHR10025:SF5 1 275 3.9E-84 T 22-04-2016 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 108 129 4.1E-48 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 73 100 4.1E-48 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 153 173 4.1E-48 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 202 231 4.1E-48 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 32 54 4.1E-48 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 252 270 4.1E-48 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 119 5.6E-16 T 22-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Gene3D G3DSA:3.40.192.10 8 138 3.9E-22 T 22-04-2016 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 SUPERFAMILY SSF53223 1 143 1.44E-15 T 22-04-2016 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 PANTHER PTHR10025 1 275 3.9E-84 T 22-04-2016 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 126 274 1.6E-53 T 22-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 SUPERFAMILY SSF51735 125 275 6.37E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Gene3D G3DSA:3.40.50.720 139 260 5.9E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03355 fd9698e2ba73f16aa6ee43643cb0bdf3 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 279 29.347 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 Pfam PF00702 haloacid dehalogenase-like hydrolase 515 738 7.8E-50 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 292 801 5.1E-82 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF81653 322 419 1.44E-29 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 269 827 1.4E-185 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:2.70.150.10 272 420 1.5E-33 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 724 743 5.7E-25 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 671 681 5.7E-25 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 519 533 5.7E-25 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 369 383 5.7E-25 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 748 760 5.7E-25 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 258 827 3.3E-122 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF56784 518 537 1.18E-58 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF56784 580 824 1.18E-58 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 521 527 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 404 418 1.7E-12 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 385 401 1.7E-12 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 324 340 1.7E-12 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 233 250 1.7E-12 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PRINTS PR00941 Cadmium-transporting ATPase signature 304 324 1.7E-12 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 Pfam PF00122 E1-E2 ATPase 291 508 4.2E-63 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:3.40.50.1000 495 532 1.1E-48 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:3.40.50.1000 651 790 1.1E-48 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PANTHER PTHR24093 235 811 3.4E-231 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 PANTHER PTHR24093:SF317 235 811 3.4E-231 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 269 584 7.9E-96 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 ProSitePatterns PS01229 Hypothetical cof family signature 2. 724 746 - T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF81665 420 513 9.68E-13 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF81665 271 323 9.68E-13 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 SUPERFAMILY SSF81665 777 800 9.68E-13 T 22-04-2016 TRD_RS08295 bfc551009c1cc90ffdbc1c86ca710eaf 846 Gene3D G3DSA:3.40.1110.10 533 650 2.5E-23 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 TRD_RS05280 fc8c3e3b38901021fb1604a7250c9085 281 SUPERFAMILY SSF161098 10 281 2.71E-71 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05280 fc8c3e3b38901021fb1604a7250c9085 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 266 2.0E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05280 fc8c3e3b38901021fb1604a7250c9085 281 PANTHER PTHR32243:SF18 4 281 1.4E-109 T 22-04-2016 TRD_RS05280 fc8c3e3b38901021fb1604a7250c9085 281 PANTHER PTHR32243 4 281 1.4E-109 T 22-04-2016 TRD_RS05280 fc8c3e3b38901021fb1604a7250c9085 281 Gene3D G3DSA:1.10.3720.10 10 266 6.8E-66 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PANTHER PTHR22855:SF42 134 334 1.7E-67 T 22-04-2016 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 SUPERFAMILY SSF52096 136 333 1.71E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 230 243 4.0E-27 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 274 283 4.0E-27 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 211 227 4.0E-27 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 168 179 4.0E-27 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 246 259 4.0E-27 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 SUPERFAMILY SSF52096 1 111 5.12E-29 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 PANTHER PTHR22855 134 334 1.7E-67 T 22-04-2016 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 136 224 2.7E-33 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 Gene3D G3DSA:3.90.226.10 1 112 3.6E-28 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS13135 f4a325a78e8670a6fe0f96b9bbdeb980 334 Gene3D G3DSA:3.90.226.10 137 322 6.5E-43 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS10025 da49ca585498256cba5d6bdb23a62c09 188 PANTHER PTHR11921 1 188 1.3E-65 T 22-04-2016 TRD_RS10025 da49ca585498256cba5d6bdb23a62c09 188 Pfam PF02754 Cysteine-rich domain 82 167 9.3E-14 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS10025 da49ca585498256cba5d6bdb23a62c09 188 PANTHER PTHR11921:SF22 1 188 1.3E-65 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 PANTHER PTHR18964 223 310 2.2E-73 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 Gene3D G3DSA:3.30.420.40 2 138 1.0E-38 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 SUPERFAMILY SSF53067 2 309 7.69E-57 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 PANTHER PTHR18964:SF123 223 310 2.2E-73 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 PANTHER PTHR18964:SF123 11 196 2.2E-73 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 Pfam PF00480 ROK family 11 309 2.4E-52 T 22-04-2016 IPR000600 ROK family TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 ProSitePatterns PS01125 ROK family signature. 134 161 - T 22-04-2016 IPR000600 ROK family TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 Gene3D G3DSA:3.30.420.40 139 293 3.2E-48 T 22-04-2016 TRD_RS04250 8bc415ddcd84ccbd679f8cf6d33c7d1d 311 PANTHER PTHR18964 11 196 2.2E-73 T 22-04-2016 TRD_RS07555 86f0b27528c4a1b3f93004aea222121f 586 Pfam PF05670 Domain of unknown function (DUF814) 474 554 5.0E-20 T 22-04-2016 IPR008532 Domain of unknown function DUF814 TRD_RS07555 86f0b27528c4a1b3f93004aea222121f 586 PANTHER PTHR15239:SF1 1 584 1.1E-85 T 22-04-2016 TRD_RS07555 86f0b27528c4a1b3f93004aea222121f 586 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 3 458 6.3E-108 T 22-04-2016 TRD_RS07555 86f0b27528c4a1b3f93004aea222121f 586 PANTHER PTHR15239 1 584 1.1E-85 T 22-04-2016 TRD_RS07555 86f0b27528c4a1b3f93004aea222121f 586 Gene3D G3DSA:2.30.310.10 2 172 1.2E-48 T 22-04-2016 TRD_RS07555 86f0b27528c4a1b3f93004aea222121f 586 Gene3D G3DSA:1.10.8.50 195 232 3.6E-6 T 22-04-2016 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 Gene3D G3DSA:3.30.465.10 103 245 4.2E-34 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 Gene3D G3DSA:3.30.43.10 21 89 2.9E-23 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 319 84.674 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 Gene3D G3DSA:3.90.78.10 246 318 1.7E-32 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 PANTHER PTHR21071 5 319 3.2E-93 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 228 316 2.3E-28 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 SUPERFAMILY SSF56194 215 318 2.22E-33 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 Pfam PF01565 FAD binding domain 41 178 2.0E-16 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 SUPERFAMILY SSF56176 27 222 1.78E-34 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS00300 bbebdcda027538701c40e9faec94a9c7 319 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 28 317 1.3E-67 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 253 1.2E-80 T 22-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 SUPERFAMILY SSF51556 3 254 1.4E-88 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 PANTHER PTHR10060:SF20 1 256 1.6E-106 T 22-04-2016 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 Pfam PF01026 TatD related DNase 4 252 4.5E-81 T 22-04-2016 IPR001130 TatD family GO:0016788 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 Gene3D G3DSA:3.20.20.140 2 254 2.3E-93 T 22-04-2016 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 PANTHER PTHR10060 1 256 1.6E-106 T 22-04-2016 IPR001130 TatD family GO:0016788 TRD_RS03390 99854bd2fa510e6cd44d64fe41a4cb76 259 PIRSF PIRSF005902 1 257 1.6E-79 T 22-04-2016 IPR001130 TatD family GO:0016788 TRD_RS00640 af0e78e8c6ecfa4eba4dfd18815f2610 350 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 124 2.0E-28 T 22-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 TRD_RS00640 af0e78e8c6ecfa4eba4dfd18815f2610 350 PANTHER PTHR22604 5 350 6.2E-66 T 22-04-2016 TRD_RS00640 af0e78e8c6ecfa4eba4dfd18815f2610 350 Gene3D G3DSA:3.40.50.720 3 137 3.1E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00640 af0e78e8c6ecfa4eba4dfd18815f2610 350 SUPERFAMILY SSF51735 4 155 5.7E-47 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00640 af0e78e8c6ecfa4eba4dfd18815f2610 350 SUPERFAMILY SSF55347 134 284 1.7E-17 T 22-04-2016 TRD_RS00640 af0e78e8c6ecfa4eba4dfd18815f2610 350 Gene3D G3DSA:3.30.360.10 138 343 1.2E-24 T 22-04-2016 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 164 212 - T 22-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 SUPERFAMILY SSF49503 118 269 1.83E-48 T 22-04-2016 IPR008972 Cupredoxin TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 150 215 7.5E-19 T 22-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 45 105 8.4E-12 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 PRINTS PR01166 Cytochrome c oxidase subunit II signature 201 218 3.4E-11 T 22-04-2016 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 PRINTS PR01166 Cytochrome c oxidase subunit II signature 80 92 3.4E-11 T 22-04-2016 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 PRINTS PR01166 Cytochrome c oxidase subunit II signature 92 112 3.4E-11 T 22-04-2016 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 Gene3D G3DSA:1.10.287.90 24 108 6.3E-20 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 SUPERFAMILY SSF46626 239 350 1.22E-13 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 Gene3D G3DSA:1.10.760.10 256 349 4.2E-9 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 PANTHER PTHR22888 26 266 3.9E-75 T 22-04-2016 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 SUPERFAMILY SSF81464 24 110 7.19E-20 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 Gene3D G3DSA:2.60.40.420 119 255 7.9E-50 T 22-04-2016 IPR008972 Cupredoxin TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 Pfam PF00034 Cytochrome c 244 349 1.5E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS03255 387f84c072cfbd3c22667c14a4adcfab 350 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 43 228 2.2E-58 T 22-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 Gene3D G3DSA:1.10.10.10 2 123 1.5E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 Pfam PF12802 MarR family 18 76 2.6E-17 T 22-04-2016 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 PANTHER PTHR33164:SF14 2 134 1.7E-28 T 22-04-2016 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 69 5.5E-9 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 120 5.5E-9 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 37 53 5.5E-9 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 PANTHER PTHR33164 2 134 1.7E-28 T 22-04-2016 TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 SUPERFAMILY SSF46785 2 122 7.93E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06205 8596858d7160ea721b21808b4cf84ad7 149 SMART SM00347 13 110 5.5E-22 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 Gene3D G3DSA:1.10.3720.10 91 162 1.5E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 Gene3D G3DSA:1.10.3720.10 200 332 1.5E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 PANTHER PTHR30465 4 171 4.9E-127 T 22-04-2016 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 PANTHER PTHR30465 194 337 4.9E-127 T 22-04-2016 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 336 2.2E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 PANTHER PTHR30465:SF0 4 171 4.9E-127 T 22-04-2016 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 PANTHER PTHR30465:SF0 194 337 4.9E-127 T 22-04-2016 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 SUPERFAMILY SSF161098 200 323 3.49E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08695 70745594e1c00019b916e6adc941e36b 338 SUPERFAMILY SSF161098 95 162 3.49E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS06020 68d6816535c826c9634f3db248c13b1f 333 SUPERFAMILY SSF53448 16 270 5.0E-53 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS06020 68d6816535c826c9634f3db248c13b1f 333 PANTHER PTHR10859 9 321 2.1E-114 T 22-04-2016 TRD_RS06020 68d6816535c826c9634f3db248c13b1f 333 Gene3D G3DSA:3.90.550.10 26 193 1.2E-27 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS06020 68d6816535c826c9634f3db248c13b1f 333 PANTHER PTHR10859:SF100 9 321 2.1E-114 T 22-04-2016 TRD_RS06020 68d6816535c826c9634f3db248c13b1f 333 Pfam PF00535 Glycosyl transferase family 2 28 186 1.7E-30 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 SUPERFAMILY SSF55060 161 274 1.77E-7 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 PANTHER PTHR20861 12 273 6.9E-49 T 22-04-2016 TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 11 277 24.722 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 PIRSF PIRSF010376 10 288 6.6E-54 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 Pfam PF00288 GHMP kinases N terminal domain 87 139 1.3E-4 T 22-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 SUPERFAMILY SSF54211 10 156 1.75E-27 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 PANTHER PTHR20861:SF2 12 273 6.9E-49 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 Gene3D G3DSA:3.30.230.10 13 156 6.4E-40 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 Gene3D G3DSA:3.30.70.890 162 277 5.5E-11 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain TRD_RS13630 891025cc04d66d41b9616c60a70aa288 294 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 12 263 2.2E-46 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 SUPERFAMILY SSF63867 327 399 7.06E-15 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 SUPERFAMILY SSF63882 5 175 9.55E-58 T 22-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 PANTHER PTHR10192 1 399 3.9E-164 T 22-04-2016 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:2.40.340.10 332 400 1.1E-18 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Pfam PF00994 Probable molybdopterin binding domain 180 315 9.7E-28 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 SUPERFAMILY SSF53218 176 321 6.81E-44 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 176 310 1.3E-34 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 166 1.0E-38 T 22-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Pfam PF03454 MoeA C-terminal region (domain IV) 330 398 8.7E-13 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:3.90.105.10 130 161 3.1E-21 T 22-04-2016 TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 SMART SM00852 179 316 9.0E-41 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:3.40.980.10 162 331 5.6E-65 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS08005 3547ad3a33f592a33746c8be175a4163 408 Gene3D G3DSA:2.170.190.11 50 129 1.1E-27 T 22-04-2016 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 SMART SM01008 21 137 1.1E-49 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 290 366 4.9E-50 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 126 180 4.9E-50 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 631 781 9.0E-71 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 369 460 9.0E-71 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 SUPERFAMILY SSF56003 129 780 1.44E-218 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 SUPERFAMILY SSF54665 5 160 1.13E-45 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 137 3.3E-27 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 181 287 4.5E-36 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 PANTHER PTHR11908 600 783 0.0 T 22-04-2016 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 PANTHER PTHR11908 8 582 0.0 T 22-04-2016 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.30.365.10 461 630 3.3E-58 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 PANTHER PTHR11908:SF76 600 783 0.0 T 22-04-2016 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 PANTHER PTHR11908:SF76 8 582 0.0 T 22-04-2016 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 154 716 7.7E-193 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05630 33d0b2c6ed0f5f2449a1bcf83aac9030 783 Gene3D G3DSA:3.90.1170.50 5 125 9.6E-41 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 Hamap MF_00201 DNA repair protein RecO [recO]. 10 257 28.023 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 Gene3D G3DSA:2.40.50.140 9 91 8.5E-33 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 SUPERFAMILY SSF57863 89 242 5.49E-34 T 22-04-2016 TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 Pfam PF11967 Recombination protein O N terminal 11 87 1.9E-22 T 22-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 PANTHER PTHR33991 10 266 7.5E-62 T 22-04-2016 TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 SUPERFAMILY SSF50249 10 87 7.71E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 Pfam PF02565 Recombination protein O C terminal 96 243 9.4E-31 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 TRD_RS00950 0310804cfd37d1b13c30c0f1929ba22d 272 TIGRFAM TIGR00613 reco: DNA repair protein RecO 13 249 2.7E-44 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF55666 460 561 2.8E-29 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 703 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:3.30.1370.10 563 629 1.3E-24 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF50249 632 713 1.72E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 PANTHER PTHR11252:SF0 9 783 0.0 T 22-04-2016 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF03725 3' exoribonuclease family, domain 2 148 207 2.6E-11 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF03725 3' exoribonuclease family, domain 2 470 540 1.6E-7 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 PIRSF PIRSF005499 4 734 3.1E-297 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:3.30.230.70 325 554 2.4E-89 T 22-04-2016 IPR027408 PNPase/RNase PH domain TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:3.30.230.70 5 224 1.8E-84 T 22-04-2016 IPR027408 PNPase/RNase PH domain TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:2.40.50.140 630 707 8.4E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF54211 303 499 6.07E-52 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SMART SM00316 632 702 2.4E-23 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF46915 240 330 2.3E-14 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF00575 S1 RNA binding domain 631 702 5.4E-17 T 22-04-2016 IPR003029 S1 domain GO:0003676 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 330 1.8E-11 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF55666 146 237 4.35E-26 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Gene3D G3DSA:1.10.10.400 227 324 3.3E-22 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF00013 KH domain 568 625 7.3E-12 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF54211 5 145 1.37E-51 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 PANTHER PTHR11252 9 783 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF01138 3' exoribonuclease family, domain 1 333 466 5.9E-24 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Pfam PF01138 3' exoribonuclease family, domain 1 15 145 2.0E-22 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SMART SM00322 564 629 3.0E-13 T 22-04-2016 IPR004087 K Homology domain GO:0003676 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 SUPERFAMILY SSF54791 567 652 1.26E-20 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS02850 aaa002f1f8bb71d4903202706b4a79c9 790 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 705 30.525 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 Gene3D G3DSA:3.90.660.20 233 404 2.3E-34 T 22-04-2016 IPR027418 Protoporphyrinogen oxidase, C-terminal domain KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 Pfam PF01593 Flavin containing amine oxidoreductase 8 453 1.7E-55 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 Gene3D G3DSA:1.10.3110.10 105 197 1.8E-28 T 22-04-2016 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 PANTHER PTHR10742:SF276 1 454 1.8E-76 T 22-04-2016 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 SUPERFAMILY SSF54373 296 404 1.0E-21 T 22-04-2016 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 Gene3D G3DSA:3.50.50.60 1 61 1.9E-10 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 SUPERFAMILY SSF51905 1 312 3.24E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 SUPERFAMILY SSF51905 421 453 3.24E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 PANTHER PTHR10742 1 454 1.8E-76 T 22-04-2016 TRD_RS06490 928f809ae4ace22fca942af443fe15d9 464 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 1 453 9.6E-75 T 22-04-2016 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS03495 22530ecbab1cad6e63b53f5a07cdec5a 282 PANTHER PTHR35984:SF1 1 282 4.0E-104 T 22-04-2016 TRD_RS03495 22530ecbab1cad6e63b53f5a07cdec5a 282 SUPERFAMILY SSF52096 53 236 1.31E-27 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS03495 22530ecbab1cad6e63b53f5a07cdec5a 282 PANTHER PTHR35984 1 282 4.0E-104 T 22-04-2016 TRD_RS03495 22530ecbab1cad6e63b53f5a07cdec5a 282 Pfam PF01972 Serine dehydrogenase proteinase 4 276 1.2E-126 T 22-04-2016 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 TRD_RS03495 22530ecbab1cad6e63b53f5a07cdec5a 282 Gene3D G3DSA:3.90.226.10 66 152 2.3E-22 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS03495 22530ecbab1cad6e63b53f5a07cdec5a 282 Gene3D G3DSA:3.90.226.10 217 248 2.3E-22 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 21 212 5.5E-49 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 SUPERFAMILY SSF50486 19 217 1.26E-57 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 PANTHER PTHR10429:SF0 13 218 1.0E-63 T 22-04-2016 TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 Gene3D G3DSA:3.10.300.10 20 216 6.2E-62 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 23 212 29.502 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 PANTHER PTHR10429 13 218 1.0E-63 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 TRD_RS07060 833c4e43bfc96cc8e21f9fbef228f49e 221 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 25 209 8.5E-60 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Gene3D G3DSA:1.10.150.120 83 162 6.7E-38 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Gene3D G3DSA:3.10.20.30 9 82 4.3E-28 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 SUPERFAMILY SSF54292 11 86 3.28E-24 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 PANTHER PTHR11908 7 155 3.9E-53 T 22-04-2016 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Pfam PF01799 [2Fe-2S] binding domain 81 154 5.7E-33 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 SUPERFAMILY SSF47741 93 162 4.84E-35 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 TRD_RS02665 e50fd85e9d8a3b4d4d9c392ffca73d95 164 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 67 6.4E-7 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 Pfam PF01966 HD domain 488 629 4.5E-18 T 22-04-2016 IPR006674 HD domain TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 SUPERFAMILY SSF109604 477 658 1.0E-16 T 22-04-2016 TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 PANTHER PTHR36442 4 716 6.7E-167 T 22-04-2016 TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 Gene3D G3DSA:1.10.3210.10 485 672 8.4E-23 T 22-04-2016 IPR006674 HD domain TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 TIGRFAM TIGR00277 HDIG: HDIG domain 485 583 9.3E-22 T 22-04-2016 IPR006675 HDIG domain TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 Pfam PF07697 7TM-HD extracellular 56 268 9.7E-49 T 22-04-2016 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 Pfam PF07698 7TM receptor with intracellular HD hydrolase 274 462 2.3E-14 T 22-04-2016 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain TRD_RS06050 df1431b1f123b0a123e571521f0a66b3 721 SMART SM00471 484 639 4.0E-10 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 SUPERFAMILY SSF56235 5 532 1.76E-176 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 Pfam PF01019 Gamma-glutamyltranspeptidase 32 527 3.2E-154 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PANTHER PTHR11686 9 532 4.1E-221 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PANTHER PTHR11686:SF8 9 532 4.1E-221 T 22-04-2016 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 348 366 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 401 416 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 128 147 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 226 242 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 39 64 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 110 128 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 255 274 3.3E-37 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS02760 1da4cc104190b8f7515f038cab24efee 532 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 17 524 4.2E-125 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 SUPERFAMILY SSF53633 12 245 4.19E-74 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 Hamap MF_01220_B Uridylate kinase [pyrH]. 11 245 45.299 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 PIRSF PIRSF005650 8 251 7.4E-96 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 14 245 2.7E-99 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 Gene3D G3DSA:3.40.1160.10 7 245 7.2E-88 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 PANTHER PTHR21499 8 244 5.2E-118 T 22-04-2016 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 PANTHER PTHR21499:SF23 8 244 5.2E-118 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 TRD_RS04600 de1874a60036e7474b28cdfd1647439a 252 Pfam PF00696 Amino acid kinase family 15 224 9.1E-31 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 Pfam PF01593 Flavin containing amine oxidoreductase 14 410 4.5E-20 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 PANTHER PTHR10742 6 439 5.2E-69 T 22-04-2016 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 SUPERFAMILY SSF51905 6 296 7.12E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 SUPERFAMILY SSF51905 399 434 7.12E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 PANTHER PTHR10742:SF266 6 439 5.2E-69 T 22-04-2016 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 Gene3D G3DSA:3.50.50.60 6 104 1.3E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 Gene3D G3DSA:3.50.50.60 193 297 1.3E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 3.1E-5 T 22-04-2016 TRD_RS02960 ca29b349091755bbcbe1269659c2b803 454 PRINTS PR00419 Adrenodoxin reductase family signature 29 42 3.1E-5 T 22-04-2016 TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 22-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 Pfam PF00467 KOW motif 8 38 1.7E-5 T 22-04-2016 IPR005824 KOW TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 98 20.366 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 104 1.0E-38 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 SUPERFAMILY SSF50104 3 100 3.61E-35 T 22-04-2016 IPR008991 Translation protein SH3-like domain TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 Gene3D G3DSA:2.30.30.30 4 92 9.0E-26 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 104 1.6E-29 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04470 463fc0f2c6d1268a43368ea17eba1745 114 PANTHER PTHR12903 4 112 2.0E-45 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PANTHER PTHR30603:SF0 227 509 1.4E-166 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PANTHER PTHR30603:SF0 92 143 1.4E-166 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF00140 Sigma-70 factor, region 1.2 105 133 2.7E-13 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 272 508 1.4E-111 T 22-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF04542 Sigma-70 region 2 277 345 2.1E-21 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 448 460 1.2E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 469 484 1.2E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 324 332 1.2E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 300 313 1.2E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PRINTS PR00046 Major sigma-70 factor signature 484 495 1.2E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 272 497 2.3E-38 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF04545 Sigma-70, region 4 444 497 1.9E-20 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 469 495 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88659 349 423 2.01E-21 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88946 222 346 1.7E-50 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88946 104 161 1.7E-50 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Pfam PF04539 Sigma-70 region 3 355 430 5.4E-28 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 17 509 36.214 T 22-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.601.10 268 345 1.3E-61 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.601.10 104 137 1.3E-61 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.10.10 438 509 1.2E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 SUPERFAMILY SSF88659 407 507 3.36E-29 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PANTHER PTHR30603 92 143 1.4E-166 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 PANTHER PTHR30603 227 509 1.4E-166 T 22-04-2016 TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 Gene3D G3DSA:1.10.10.10 349 400 6.9E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS13715 959e79e19527b16d3c2b4dc76f4c1883 509 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 300 313 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 PANTHER PTHR19376 319 1289 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 PANTHER PTHR19376:SF32 319 1289 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 PANTHER PTHR19376 6 169 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Pfam PF04997 RNA polymerase Rpb1, domain 1 18 519 7.5E-87 T 22-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Pfam PF04998 RNA polymerase Rpb1, domain 5 918 1342 1.7E-68 T 22-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 17 1403 10.147 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Gene3D G3DSA:2.40.50.100 1200 1239 3.2E-6 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Gene3D G3DSA:2.40.50.100 1125 1177 7.5E-7 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 SUPERFAMILY SSF64484 1232 1394 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 SUPERFAMILY SSF64484 17 1171 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 330 1178 0.0 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Pfam PF00623 RNA polymerase Rpb1, domain 2 521 661 2.0E-34 T 22-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Pfam PF04983 RNA polymerase Rpb1, domain 3 666 811 1.4E-26 T 22-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Gene3D G3DSA:2.40.40.20 594 665 1.1E-35 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Gene3D G3DSA:2.40.40.20 526 553 1.1E-35 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 SMART SM00663 412 691 7.5E-170 T 22-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 PANTHER PTHR19376:SF32 1330 1398 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 Pfam PF05000 RNA polymerase Rpb1, domain 4 847 915 3.8E-15 T 22-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 PANTHER PTHR19376:SF32 6 169 0.0 T 22-04-2016 TRD_RS04555 d4ba4743fb94bffeae27a4d74d22984c 1411 PANTHER PTHR19376 1330 1398 0.0 T 22-04-2016 TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 PANTHER PTHR10443 104 310 1.5E-67 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 PANTHER PTHR10443 348 394 1.5E-67 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 SUPERFAMILY SSF51556 350 395 9.3E-78 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 SUPERFAMILY SSF51556 80 309 9.3E-78 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 74 393 1.3E-83 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 Gene3D G3DSA:3.20.20.140 69 316 2.4E-95 T 22-04-2016 TRD_RS08040 ae022550522444c7cf4e79a01a85a9e8 396 Gene3D G3DSA:3.20.20.140 354 395 2.4E-95 T 22-04-2016 TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 287 16.029 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 PANTHER PTHR13767 1 292 1.2E-85 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 174 214 1.9E-7 T 22-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 PANTHER PTHR13767:SF2 1 292 1.2E-85 T 22-04-2016 TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 SUPERFAMILY SSF55120 2 217 1.92E-69 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 173 2.4E-42 T 22-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 TRD_RS03525 13786d44b34f3f0064cd47141f3499a5 302 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 2 212 9.1E-65 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS07635 e8c54d0cce626a6d316741b34a864447 239 Gene3D G3DSA:1.10.10.580 190 234 9.5E-5 T 22-04-2016 IPR023093 Rad21/Rec8-like protein, C-terminal TRD_RS07635 e8c54d0cce626a6d316741b34a864447 239 PANTHER PTHR33969 20 239 3.5E-39 T 22-04-2016 TRD_RS07635 e8c54d0cce626a6d316741b34a864447 239 Pfam PF02616 Segregation and condensation protein ScpA 175 231 1.3E-6 T 22-04-2016 IPR003768 Segregation and condensation protein A TRD_RS07635 e8c54d0cce626a6d316741b34a864447 239 Pfam PF02616 Segregation and condensation protein ScpA 31 128 3.2E-12 T 22-04-2016 IPR003768 Segregation and condensation protein A TRD_RS07635 e8c54d0cce626a6d316741b34a864447 239 PANTHER PTHR33969:SF2 20 239 3.5E-39 T 22-04-2016 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 SUPERFAMILY SSF81442 18 528 2.35E-180 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 29 476 9.7E-150 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PANTHER PTHR10422:SF6 6 603 4.9E-267 T 22-04-2016 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 Gene3D G3DSA:1.10.287.70 573 626 9.7E-6 T 22-04-2016 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PANTHER PTHR10422 6 603 4.9E-267 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 21 527 3.9E-211 T 22-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 Gene3D G3DSA:1.20.210.10 11 543 7.9E-198 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 169 187 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 432 453 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 94 118 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 217 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 319 340 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 136 148 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 354 372 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 249 270 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 295 310 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 382 401 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 67 90 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 PRINTS PR01165 Cytochrome c oxidase subunit I signature 20 45 3.2E-100 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS03250 4a2b5ac909a98fb309f4d65765b63142 639 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 251 305 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS01250 c140d094aceca3311751b46c156bbf3d 419 PANTHER PTHR30337 1 417 2.3E-55 T 22-04-2016 TRD_RS01250 c140d094aceca3311751b46c156bbf3d 419 Pfam PF00149 Calcineurin-like phosphoesterase 2 235 1.1E-13 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS01250 c140d094aceca3311751b46c156bbf3d 419 SUPERFAMILY SSF56300 2 332 9.39E-51 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS01250 c140d094aceca3311751b46c156bbf3d 419 Gene3D G3DSA:3.60.21.10 1 287 3.3E-50 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS01250 c140d094aceca3311751b46c156bbf3d 419 PANTHER PTHR30337:SF0 1 417 2.3E-55 T 22-04-2016 TRD_RS01250 c140d094aceca3311751b46c156bbf3d 419 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 2 264 6.0E-42 T 22-04-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 PANTHER PTHR21148:SF26 38 417 5.5E-148 T 22-04-2016 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 45 417 1.9E-136 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 Pfam PF01702 Queuine tRNA-ribosyltransferase 171 411 7.0E-79 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 PANTHER PTHR21148 38 417 5.5E-148 T 22-04-2016 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 Gene3D G3DSA:3.20.20.105 39 416 4.9E-152 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 47 417 1.1E-141 T 22-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 43 409 51.101 T 22-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03715 9c04aff3ab283e9dcd434849efbfa50d 430 SUPERFAMILY SSF51713 44 415 6.15E-143 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 Pfam PF01220 Dehydroquinase class II 10 145 2.6E-58 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 154 70.08 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 23 138 1.0E-34 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 ProSitePatterns PS01029 Dehydroquinase class II signature. 13 30 - T 22-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 Gene3D G3DSA:3.40.50.9100 8 148 1.2E-63 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 SUPERFAMILY SSF52304 9 149 1.05E-60 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 PIRSF PIRSF001399 6 151 6.7E-60 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 PANTHER PTHR21272 5 154 4.7E-87 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS07945 b87fa311a79262420e5222b0798cf5c2 154 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 10 147 1.7E-60 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 TRD_RS06665 4e351ad43d5cf8b283f67885e905e2b9 328 SUPERFAMILY SSF141868 91 325 6.41E-58 T 22-04-2016 IPR001633 EAL domain TRD_RS06665 4e351ad43d5cf8b283f67885e905e2b9 328 Gene3D G3DSA:3.20.20.450 91 325 1.6E-52 T 22-04-2016 IPR001633 EAL domain TRD_RS06665 4e351ad43d5cf8b283f67885e905e2b9 328 Pfam PF00563 EAL domain 91 319 3.9E-50 T 22-04-2016 IPR001633 EAL domain TRD_RS06665 4e351ad43d5cf8b283f67885e905e2b9 328 PANTHER PTHR33121 87 327 1.8E-42 T 22-04-2016 TRD_RS06665 4e351ad43d5cf8b283f67885e905e2b9 328 PANTHER PTHR33121:SF10 87 327 1.8E-42 T 22-04-2016 TRD_RS06665 4e351ad43d5cf8b283f67885e905e2b9 328 SMART SM00052 72 324 6.5E-31 T 22-04-2016 IPR001633 EAL domain TRD_RS06505 1379f1aa80d243343561334846abcf84 617 Gene3D G3DSA:1.10.287.950 305 522 1.6E-44 T 22-04-2016 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 SMART SM00283 291 553 7.6E-47 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 PANTHER PTHR32089 91 122 8.3E-54 T 22-04-2016 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 PANTHER PTHR32089 579 597 8.3E-54 T 22-04-2016 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 PANTHER PTHR32089 259 536 8.3E-54 T 22-04-2016 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 SUPERFAMILY SSF58104 295 553 3.4E-52 T 22-04-2016 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 356 548 2.2E-41 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 Gene3D G3DSA:1.10.490.10 22 192 8.5E-45 T 22-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 Pfam PF11563 Protoglobin 30 198 1.0E-28 T 22-04-2016 TRD_RS06505 1379f1aa80d243343561334846abcf84 617 SUPERFAMILY SSF46458 18 192 2.45E-25 T 22-04-2016 IPR009050 Globin-like TRD_RS05400 6165794d6fd248fb020b39a942b67c8e 269 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 122 147 - T 22-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 TRD_RS05400 6165794d6fd248fb020b39a942b67c8e 269 Gene3D G3DSA:1.10.600.10 1 254 2.3E-67 T 22-04-2016 IPR008949 Isoprenoid synthase domain TRD_RS05400 6165794d6fd248fb020b39a942b67c8e 269 SUPERFAMILY SSF48576 2 254 2.23E-64 T 22-04-2016 IPR008949 Isoprenoid synthase domain TRD_RS05400 6165794d6fd248fb020b39a942b67c8e 269 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 92 107 - T 22-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 TRD_RS05400 6165794d6fd248fb020b39a942b67c8e 269 PANTHER PTHR31480 4 266 6.8E-58 T 22-04-2016 TRD_RS05400 6165794d6fd248fb020b39a942b67c8e 269 Pfam PF00494 Squalene/phytoene synthase 2 232 2.4E-56 T 22-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 Gene3D G3DSA:1.10.530.10 595 745 3.9E-47 T 22-04-2016 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SUPERFAMILY SSF48452 299 465 7.59E-17 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SUPERFAMILY SSF48452 57 276 1.19E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 Gene3D G3DSA:1.25.40.10 244 466 2.3E-21 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF01464 Transglycosylase SLT domain 604 713 1.6E-27 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 PANTHER PTHR21666 583 746 5.9E-46 T 22-04-2016 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SUPERFAMILY SSF53955 597 742 1.23E-44 T 22-04-2016 IPR023346 Lysozyme-like domain TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF13174 Tetratricopeptide repeat 245 275 0.12 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 133 166 160.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 293 326 32.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 434 465 430.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 242 275 24.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 SMART SM00028 327 360 200.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF13432 Tetratricopeptide repeat 299 361 4.8E-9 T 22-04-2016 TRD_RS07155 01c336f5921282c064d1d6c2237dc0a5 748 Pfam PF13432 Tetratricopeptide repeat 380 431 3.3E-4 T 22-04-2016 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 40 315 60.274 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 SMART SM00963 17 97 1.0E-18 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 Pfam PF00448 SRP54-type protein, GTPase domain 115 314 1.2E-76 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 Gene3D G3DSA:3.40.50.300 126 314 2.7E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 SMART SM00962 114 315 8.7E-114 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 41 314 4.9E-107 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 Gene3D G3DSA:1.20.120.140 41 125 4.4E-25 T 22-04-2016 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 PANTHER PTHR11564:SF16 11 314 1.7E-130 T 22-04-2016 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 288 301 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 SUPERFAMILY SSF52540 112 314 9.49E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 PANTHER PTHR11564 11 314 1.7E-130 T 22-04-2016 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 SMART SM00382 113 265 2.5E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 Pfam PF02881 SRP54-type protein, helical bundle domain 31 93 7.6E-11 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08490 e19bdc073deed18eed0134e76e5c6915 320 SUPERFAMILY SSF47364 16 91 4.19E-18 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 SMART SM01400 5 121 5.5E-73 T 22-04-2016 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 5 121 1.9E-47 T 22-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 SUPERFAMILY SSF53271 70 302 1.51E-60 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 312 4.9E-121 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 Gene3D G3DSA:3.40.50.2020 160 282 2.7E-46 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 Gene3D G3DSA:3.40.50.2020 4 159 3.4E-70 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 311 7.5E-28 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 PANTHER PTHR10210:SF41 2 311 4.3E-163 T 22-04-2016 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 PANTHER PTHR10210 2 311 4.3E-163 T 22-04-2016 TRD_RS00160 eb8dde90aa8ff0c53b4e6d509077f169 312 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 5 312 46.225 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 SUPERFAMILY SSF52768 14 310 1.42E-98 T 22-04-2016 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 PRINTS PR00116 Arginase signature 121 136 4.2E-13 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 PRINTS PR00116 Arginase signature 234 263 4.2E-13 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 22-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 Gene3D G3DSA:3.40.800.10 13 313 5.7E-109 T 22-04-2016 IPR023696 Ureohydrolase domain TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 PIRSF PIRSF036979 14 313 1.2E-99 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 Pfam PF00491 Arginase family 35 305 7.4E-87 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 PANTHER PTHR11358 1 322 3.9E-99 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02450 fa0317a682a1dc177a6896df58d0f339 324 TIGRFAM TIGR01230 agmatinase: agmatinase 29 307 5.3E-68 T 22-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 TRD_RS07365 c6d7988f11ff0cf2ab756f897e69af5c 292 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 21 263 4.5E-92 T 22-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted TRD_RS07365 c6d7988f11ff0cf2ab756f897e69af5c 292 Gene3D G3DSA:3.20.20.30 1 285 2.9E-66 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS07365 c6d7988f11ff0cf2ab756f897e69af5c 292 PANTHER PTHR30011 1 229 6.6E-52 T 22-04-2016 TRD_RS07365 c6d7988f11ff0cf2ab756f897e69af5c 292 Pfam PF00296 Luciferase-like monooxygenase 14 252 1.7E-50 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS07365 c6d7988f11ff0cf2ab756f897e69af5c 292 SUPERFAMILY SSF51679 1 285 1.96E-60 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 PANTHER PTHR24220:SF568 3 239 1.4E-91 T 22-04-2016 TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 Pfam PF00005 ABC transporter 18 166 8.2E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 SUPERFAMILY SSF52540 2 237 2.72E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 SMART SM00382 26 239 8.2E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 PANTHER PTHR24220 3 239 1.4E-91 T 22-04-2016 TRD_RS06610 6e0043ad8f2aa3e391a04652e0a624f6 239 Gene3D G3DSA:3.40.50.300 1 235 2.4E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 Pfam PF13535 ATP-grasp domain 145 295 7.7E-32 T 22-04-2016 TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 SUPERFAMILY SSF56059 92 342 4.24E-36 T 22-04-2016 TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 SMART SM01209 109 286 0.0014 T 22-04-2016 TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 PANTHER PTHR23132 85 284 9.1E-15 T 22-04-2016 TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 PANTHER PTHR23132:SF9 85 284 9.1E-15 T 22-04-2016 TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 Gene3D G3DSA:3.30.470.20 114 340 1.1E-24 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS04195 27ad83252bcb94be1901115b2f6949c7 420 Gene3D G3DSA:3.40.50.20 7 113 9.0E-12 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Gene3D G3DSA:3.40.50.1220 181 330 5.4E-48 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Gene3D G3DSA:3.40.50.970 360 550 1.8E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 6.9E-47 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 400 540 5.2E-30 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 SUPERFAMILY SSF52518 1 177 8.84E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 SUPERFAMILY SSF52467 154 349 1.08E-47 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 189 324 2.0E-35 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 PANTHER PTHR18968 1 547 2.4E-136 T 22-04-2016 TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 Gene3D G3DSA:3.40.50.970 2 176 1.7E-53 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS04110 8a8bf7256ea121aca2a2fa137a9e4a7e 558 SUPERFAMILY SSF52518 364 552 3.4E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50465 303 399 7.2E-36 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 305 399 1.2E-44 T 22-04-2016 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF52540 9 231 6.59E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PANTHER PTHR23115 1 400 3.4E-242 T 22-04-2016 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 PANTHER PTHR23115:SF112 1 400 3.4E-242 T 22-04-2016 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.6E-14 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:3.40.50.300 7 215 1.2E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03144 Elongation factor Tu domain 2 230 298 1.1E-18 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 7.1E-58 T 22-04-2016 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03143 Elongation factor Tu C-terminal domain 303 398 5.2E-35 T 22-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 400 59.863 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 400 1.4E-215 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 216 303 8.3E-37 T 22-04-2016 TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site TRD_RS03095 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50447 210 306 6.87E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50465 303 399 7.2E-36 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.7E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 305 399 1.2E-44 T 22-04-2016 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF52540 9 231 6.59E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PANTHER PTHR23115 1 400 3.4E-242 T 22-04-2016 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 PANTHER PTHR23115:SF112 1 400 3.4E-242 T 22-04-2016 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.6E-14 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:3.40.50.300 7 215 1.2E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03144 Elongation factor Tu domain 2 230 298 1.1E-18 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 7.1E-58 T 22-04-2016 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Pfam PF03143 Elongation factor Tu C-terminal domain 303 398 5.2E-35 T 22-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 400 59.863 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 400 1.4E-215 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 Gene3D G3DSA:2.40.30.10 216 303 8.3E-37 T 22-04-2016 TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site TRD_RS04535 9bc76eab3bb26b09e68008dd0190a390 400 SUPERFAMILY SSF50447 210 306 6.87E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS02205 ea2c2798613658de7abc758165b46222 237 SUPERFAMILY SSF100950 5 149 6.51E-42 T 22-04-2016 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 225 33.602 T 22-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 222 2.2E-73 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 PANTHER PTHR11934 4 231 1.5E-95 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 Gene3D G3DSA:3.40.50.1360 5 144 1.1E-52 T 22-04-2016 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 SUPERFAMILY SSF75445 132 208 1.83E-23 T 22-04-2016 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 Gene3D G3DSA:3.30.70.260 145 205 1.6E-25 T 22-04-2016 TRD_RS02205 ea2c2798613658de7abc758165b46222 237 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 221 2.9E-60 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 11 22 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 Pfam PF00318 Ribosomal protein S2 14 229 4.7E-91 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 SUPERFAMILY SSF52313 11 237 1.44E-91 T 22-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PRINTS PR00395 Ribosomal protein S2 signature 92 109 1.0E-39 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PRINTS PR00395 Ribosomal protein S2 signature 180 191 1.0E-39 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PRINTS PR00395 Ribosomal protein S2 signature 11 29 1.0E-39 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PRINTS PR00395 Ribosomal protein S2 signature 163 180 1.0E-39 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PRINTS PR00395 Ribosomal protein S2 signature 42 51 1.0E-39 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PRINTS PR00395 Ribosomal protein S2 signature 201 215 1.0E-39 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 7 230 41.511 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 Gene3D G3DSA:3.40.50.10490 28 104 3.9E-67 T 22-04-2016 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 Gene3D G3DSA:3.40.50.10490 163 245 3.9E-67 T 22-04-2016 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 PANTHER PTHR12534 7 273 2.2E-113 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 9 231 7.3E-95 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 TRD_RS04590 b743c76867c156fc82858242bfc72f20 288 Gene3D G3DSA:1.10.287.610 105 157 3.6E-17 T 22-04-2016 TRD_RS09235 877fc53b9a6feb20f04951b04f8080f6 368 Pfam PF00999 Sodium/hydrogen exchanger family 9 361 5.1E-39 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 TRD_RS09235 877fc53b9a6feb20f04951b04f8080f6 368 PANTHER PTHR32468 1 367 1.2E-66 T 22-04-2016 TRD_RS09235 877fc53b9a6feb20f04951b04f8080f6 368 PANTHER PTHR32468:SF9 1 367 1.2E-66 T 22-04-2016 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 Pfam PF00672 HAMP domain 168 236 3.0E-18 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 Gene3D G3DSA:1.10.287.130 230 303 1.3E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 Gene3D G3DSA:3.30.565.10 308 463 5.4E-45 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 465 3.1E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 SUPERFAMILY SSF55874 297 463 4.06E-47 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 SUPERFAMILY SSF47384 223 308 5.69E-20 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 SUPERFAMILY SSF158472 187 237 1.11E-10 T 22-04-2016 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 SMART SM00387 352 466 1.1E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PANTHER PTHR24423 61 112 1.0E-89 T 22-04-2016 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PANTHER PTHR24423 4 33 1.0E-89 T 22-04-2016 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PANTHER PTHR24423 181 463 1.0E-89 T 22-04-2016 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 SMART SM00304 187 239 2.9E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 307 2.2E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 4.8E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 463 4.8E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 420 4.8E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 4.8E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS13620 8a741d88b58fe6f3037bdd9aa163eb31 469 SMART SM00388 240 307 1.0E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS05855 1208677b87fb4aee0851f520129794c5 298 SUPERFAMILY SSF161098 78 277 8.76E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05855 1208677b87fb4aee0851f520129794c5 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 293 3.8E-31 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05855 1208677b87fb4aee0851f520129794c5 298 PANTHER PTHR30465 3 295 6.4E-128 T 22-04-2016 TRD_RS05855 1208677b87fb4aee0851f520129794c5 298 Gene3D G3DSA:1.10.3720.10 76 292 1.6E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05855 1208677b87fb4aee0851f520129794c5 298 PANTHER PTHR30465:SF2 3 295 6.4E-128 T 22-04-2016 TRD_RS05855 1208677b87fb4aee0851f520129794c5 298 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 8 60 2.2E-14 T 22-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 518 2.1E-82 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 SUPERFAMILY SSF103473 5 191 2.09E-46 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 Pfam PF07690 Major Facilitator Superfamily 200 429 2.9E-20 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 Pfam PF07690 Major Facilitator Superfamily 15 193 9.0E-40 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 Gene3D G3DSA:1.20.1250.20 502 525 3.1E-27 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 Gene3D G3DSA:1.20.1250.20 282 445 3.1E-27 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 SUPERFAMILY SSF103473 200 439 1.31E-33 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 SUPERFAMILY SSF103473 496 522 1.31E-33 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 Gene3D G3DSA:1.20.1250.20 7 191 5.7E-34 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 PANTHER PTHR23501 244 527 1.1E-122 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 PANTHER PTHR23501 5 226 1.1E-122 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 2.8E-5 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 2.8E-5 T 22-04-2016 TRD_RS02270 6884d6a1b789a276d203556190ce17b8 544 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 2.8E-5 T 22-04-2016 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 Pfam PF07730 Histidine kinase 148 212 1.1E-12 T 22-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 PANTHER PTHR24421 131 344 1.3E-57 T 22-04-2016 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 PANTHER PTHR24421:SF23 131 344 1.3E-57 T 22-04-2016 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 SUPERFAMILY SSF55874 216 341 1.96E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 SMART SM00304 78 132 2.3E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 252 342 7.8E-11 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 SUPERFAMILY SSF158472 79 129 8.89E-5 T 22-04-2016 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 Gene3D G3DSA:3.30.565.10 248 343 3.7E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 Pfam PF00672 HAMP domain 60 128 2.9E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 340 2.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 300 2.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 321 2.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS08480 c818aed9c8f1b7e519946bfb58ad370d 355 SMART SM00387 250 343 1.0E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS09050 e95cd459c440e2a3adfc01c8b7b4aee8 272 PIRSF PIRSF038471 2 272 3.9E-47 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 TRD_RS09050 e95cd459c440e2a3adfc01c8b7b4aee8 272 PANTHER PTHR34138 1 261 5.6E-35 T 22-04-2016 TRD_RS09050 e95cd459c440e2a3adfc01c8b7b4aee8 272 Pfam PF04085 rod shape-determining protein MreC 118 266 8.9E-29 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 TRD_RS09050 e95cd459c440e2a3adfc01c8b7b4aee8 272 PANTHER PTHR34138:SF1 1 261 5.6E-35 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Pfam PF00679 Elongation factor G C-terminus 600 686 2.3E-33 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Pfam PF00009 Elongation factor Tu GTP binding domain 11 282 1.9E-69 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Gene3D G3DSA:3.40.50.300 10 287 1.7E-105 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SUPERFAMILY SSF52540 10 282 3.37E-110 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 182 6.7E-31 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Pfam PF03144 Elongation factor Tu domain 2 324 391 6.1E-14 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Gene3D G3DSA:2.40.30.10 305 405 9.1E-40 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Gene3D G3DSA:3.30.70.240 600 685 3.8E-36 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Pfam PF03764 Elongation factor G, domain IV 479 596 2.2E-47 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SUPERFAMILY SSF54980 402 480 6.47E-25 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SUPERFAMILY SSF54980 603 689 3.74E-32 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PANTHER PTHR23115 1 179 0.0 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PANTHER PTHR23115 303 691 0.0 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PANTHER PTHR23115 255 283 0.0 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Gene3D G3DSA:3.30.230.10 484 599 3.9E-51 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SMART SM00889 480 598 1.0E-73 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SUPERFAMILY SSF54211 479 599 3.29E-46 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Gene3D G3DSA:3.30.70.870 406 480 2.0E-38 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 TIGRFAM TIGR00484 EF-G: translation elongation factor G 4 691 0.0 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Hamap MF_00054_B Elongation factor G [fusA]. 8 691 111.173 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SMART SM00838 600 687 1.4E-56 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PRINTS PR00315 GTP-binding elongation factor signature 60 68 3.5E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PRINTS PR00315 GTP-binding elongation factor signature 96 107 3.5E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.5E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PRINTS PR00315 GTP-binding elongation factor signature 132 141 3.5E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PRINTS PR00315 GTP-binding elongation factor signature 80 90 3.5E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PANTHER PTHR23115:SF66 1 179 0.0 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PANTHER PTHR23115:SF66 303 691 0.0 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 PANTHER PTHR23115:SF66 255 283 0.0 T 22-04-2016 TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 SUPERFAMILY SSF50447 265 404 3.79E-38 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS04540 ebeb20df41072d6e35789860cb214676 695 Pfam PF14492 Elongation Factor G, domain II 404 477 6.8E-35 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 Gene3D G3DSA:3.30.300.20 1 116 5.3E-40 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 Pfam PF02033 Ribosome-binding factor A 5 108 8.5E-32 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 113 2.1E-33 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 1 115 22.886 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 SUPERFAMILY SSF89919 1 111 2.09E-36 T 22-04-2016 IPR023799 Ribosome-binding factor A domain TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 8 95 2.0E-16 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 TRD_RS03535 9417fcb76c70f8538a1486ba740cddc4 129 PANTHER PTHR33515 1 124 3.7E-41 T 22-04-2016 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 Gene3D G3DSA:3.90.470.10 1 110 4.3E-41 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 27.274 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 22-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 PANTHER PTHR13501 1 111 1.4E-44 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 106 1.1E-36 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 Pfam PF00237 Ribosomal protein L22p/L17e 8 107 4.0E-31 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 TRD_RS04500 9f097a905cdc6e46c44a0950a2ff2fc8 118 SUPERFAMILY SSF54843 1 111 5.62E-43 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF04542 Sigma-70 region 2 106 175 5.5E-23 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF00140 Sigma-70 factor, region 1.2 68 100 5.6E-16 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.10.10 179 229 3.1E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 101 327 8.0E-41 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 SUPERFAMILY SSF88946 67 176 2.09E-52 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 SUPERFAMILY SSF88659 179 253 3.97E-19 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PANTHER PTHR30603:SF0 23 336 3.2E-136 T 22-04-2016 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PANTHER PTHR30603 23 336 3.2E-136 T 22-04-2016 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF04545 Sigma-70, region 4 275 327 1.2E-20 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 130 143 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 299 314 2.3E-28 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 154 162 2.3E-28 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 278 290 2.3E-28 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 130 143 2.3E-28 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 PRINTS PR00046 Major sigma-70 factor signature 314 325 2.3E-28 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Pfam PF04539 Sigma-70 region 3 187 260 5.0E-23 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.10.10 269 336 4.7E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 SUPERFAMILY SSF88659 237 336 4.3E-29 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 299 325 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS05915 aa6cff0acf9d0f2c6b4bdba603797816 340 Gene3D G3DSA:1.10.601.10 62 175 2.0E-64 T 22-04-2016 TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 SUPERFAMILY SSF51735 5 187 3.21E-93 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 SUPERFAMILY SSF51735 298 356 3.21E-93 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 PIRSF PIRSF015578 1 368 2.3E-87 T 22-04-2016 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Pfam PF01658 Myo-inositol-1-phosphate synthase 193 301 2.6E-34 T 22-04-2016 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 SUPERFAMILY SSF55347 191 301 6.67E-39 T 22-04-2016 TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Gene3D G3DSA:3.40.50.720 302 356 1.3E-109 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Gene3D G3DSA:3.40.50.720 3 191 1.3E-109 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 PANTHER PTHR11510:SF9 4 370 8.5E-152 T 22-04-2016 TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 Gene3D G3DSA:3.30.360.10 192 301 1.4E-49 T 22-04-2016 TRD_RS03000 e0d4bc4e3dda2e9ece2828e45e8f9c85 371 PANTHER PTHR11510 4 370 8.5E-152 T 22-04-2016 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 Gene3D G3DSA:3.40.640.10 70 315 1.5E-82 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 SUPERFAMILY SSF53383 3 424 9.0E-134 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 PANTHER PTHR11986:SF5 1 427 1.2E-210 T 22-04-2016 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 425 102.527 T 22-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 424 7.3E-184 T 22-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 PANTHER PTHR11986 1 427 1.2E-210 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 Pfam PF00202 Aminotransferase class-III 32 422 9.8E-78 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 Gene3D G3DSA:3.90.1150.10 319 424 1.6E-44 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS05215 eb6e037ab793850f6538b65c8a8f7848 428 Gene3D G3DSA:3.90.1150.10 2 69 1.6E-44 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS00545 1ffe7c9f19e74dc3ff3f5a477f5e8f11 89 PANTHER PTHR34654 2 86 1.8E-14 T 22-04-2016 TRD_RS00545 1ffe7c9f19e74dc3ff3f5a477f5e8f11 89 SUPERFAMILY SSF54814 29 64 4.97E-7 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 TRD_RS00545 1ffe7c9f19e74dc3ff3f5a477f5e8f11 89 Pfam PF13083 KH domain 6 77 6.4E-17 T 22-04-2016 TRD_RS00545 1ffe7c9f19e74dc3ff3f5a477f5e8f11 89 Gene3D G3DSA:3.30.1370.10 33 65 5.0E-6 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 TRD_RS00545 1ffe7c9f19e74dc3ff3f5a477f5e8f11 89 Hamap MF_00088 UPF0109 protein . 4 78 16.266 T 22-04-2016 IPR020627 Uncharacterised protein family UPF0109 TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 SUPERFAMILY SSF52540 20 271 1.85E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 SMART SM00382 57 249 1.4E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 PANTHER PTHR24220:SF336 22 339 5.3E-184 T 22-04-2016 TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 251 318 1.2E-17 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 Pfam PF00005 ABC transporter 49 199 6.0E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 PANTHER PTHR24220 22 339 5.3E-184 T 22-04-2016 TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 Gene3D G3DSA:3.40.50.300 18 275 2.0E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07625 d7a0a544040f66d7897acfd852da2335 344 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 249 338 9.6E-29 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 SMART SM00471 35 156 1.7E-10 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF04607 Region found in RelA / SpoT proteins 238 347 1.8E-38 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF55021 633 710 3.24E-15 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF81271 380 453 3.27E-24 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF13291 ACT domain 632 708 6.1E-21 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 SMART SM00954 238 348 1.5E-62 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF81301 195 370 1.8E-64 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 SUPERFAMILY SSF109604 7 194 2.51E-75 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 20 708 4.7E-241 T 22-04-2016 IPR004811 RelA/SpoT family GO:0015969 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:3.30.460.10 181 327 9.9E-50 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 PANTHER PTHR21262:SF0 8 711 0.0 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 PANTHER PTHR21262 8 711 0.0 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:3.30.70.260 632 707 4.6E-22 T 22-04-2016 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Gene3D G3DSA:3.10.20.30 392 455 2.1E-28 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF02824 TGS domain 393 452 6.4E-27 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 TRD_RS08010 0d9048e34be6b2e1230d2fd9787d35e8 720 Pfam PF13328 HD domain 20 178 1.2E-58 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 SUPERFAMILY SSF81923 5 157 1.07E-37 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 623 2.9E-43 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 679 697 2.9E-43 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 726 2.9E-43 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 668 2.9E-43 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 SUPERFAMILY SSF52540 158 549 3.14E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 146 7.9E-13 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.9E-10 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 SMART SM01086 769 859 8.8E-42 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 22-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:1.10.8.60 344 429 7.2E-37 T 22-04-2016 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:3.40.50.300 554 780 5.5E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF07724 AAA domain (Cdc48 subfamily) 600 763 3.4E-57 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:1.10.1780.10 5 151 2.8E-40 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 8 843 1.5E-269 T 22-04-2016 IPR017729 Type VI secretion system, ATPase ClpV1 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 SMART SM00382 601 751 5.1E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 SMART SM00382 199 344 1.5E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 335 1.3E-13 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:1.10.8.60 781 856 2.8E-35 T 22-04-2016 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 PANTHER PTHR11638 1 855 0.0 T 22-04-2016 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 SUPERFAMILY SSF52540 550 855 1.06E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 635 653 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Gene3D G3DSA:3.40.50.300 160 343 1.4E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 PANTHER PTHR11638:SF18 1 855 0.0 T 22-04-2016 TRD_RS02045 66b05a4dc863368aa8e9c11d586a8aea 870 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 2.9E-30 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS03780 bf61e7b2fa46f33bac9115cdd51b6b47 1514 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 145 267 7.1E-9 T 22-04-2016 TRD_RS03780 bf61e7b2fa46f33bac9115cdd51b6b47 1514 PANTHER PTHR10790 791 910 1.2E-18 T 22-04-2016 TRD_RS03780 bf61e7b2fa46f33bac9115cdd51b6b47 1514 TIGRFAM TIGR03662 Chlor_Arch_YYY: chlor_Arch_YYY domain 680 1460 8.9E-124 T 22-04-2016 IPR018746 Protein of unknown function DUF2298 TRD_RS03780 bf61e7b2fa46f33bac9115cdd51b6b47 1514 Pfam PF10060 Uncharacterized membrane protein (DUF2298) 723 1263 7.9E-118 T 22-04-2016 IPR018746 Protein of unknown function DUF2298 TRD_RS03780 bf61e7b2fa46f33bac9115cdd51b6b47 1514 PANTHER PTHR10790:SF49 791 910 1.2E-18 T 22-04-2016 TRD_RS01085 1f7de86aa601eb0545ac7cc2eda97b23 86 PANTHER PTHR33884 1 86 1.5E-18 T 22-04-2016 TRD_RS01085 1f7de86aa601eb0545ac7cc2eda97b23 86 Pfam PF04226 Transglycosylase associated protein 38 86 3.2E-11 T 22-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 TRD_RS05900 3646a0e376df1aff8f7271439f73a69b 143 Pfam PF00011 Hsp20/alpha crystallin family 43 140 1.1E-18 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain TRD_RS05900 3646a0e376df1aff8f7271439f73a69b 143 Gene3D G3DSA:2.60.40.790 17 141 9.5E-28 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS05900 3646a0e376df1aff8f7271439f73a69b 143 PANTHER PTHR11527 41 141 6.8E-25 T 22-04-2016 IPR031107 Small heat shock protein HSP20 TRD_RS05900 3646a0e376df1aff8f7271439f73a69b 143 SUPERFAMILY SSF49764 31 141 1.19E-29 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS05900 3646a0e376df1aff8f7271439f73a69b 143 PANTHER PTHR11527:SF122 41 141 6.8E-25 T 22-04-2016 TRD_RS02805 b95511b92241021384870a2aa070214b 235 Pfam PF00834 Ribulose-phosphate 3 epimerase family 12 208 1.6E-76 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 TRD_RS02805 b95511b92241021384870a2aa070214b 235 PANTHER PTHR11749 8 234 7.6E-105 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 TRD_RS02805 b95511b92241021384870a2aa070214b 235 PIRSF PIRSF001461 7 234 1.2E-84 T 22-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 TRD_RS02805 b95511b92241021384870a2aa070214b 235 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 39 53 - T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 TRD_RS02805 b95511b92241021384870a2aa070214b 235 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 12 214 2.1E-80 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 TRD_RS02805 b95511b92241021384870a2aa070214b 235 Gene3D G3DSA:3.20.20.70 10 228 1.2E-82 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS02805 b95511b92241021384870a2aa070214b 235 SUPERFAMILY SSF51366 6 227 1.35E-70 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS02615 3345a2a6f592202e8d83f45a9e0db677 315 Pfam PF00753 Metallo-beta-lactamase superfamily 26 224 1.5E-26 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS02615 3345a2a6f592202e8d83f45a9e0db677 315 PANTHER PTHR11935:SF28 5 236 3.0E-59 T 22-04-2016 TRD_RS02615 3345a2a6f592202e8d83f45a9e0db677 315 PANTHER PTHR11935 5 236 3.0E-59 T 22-04-2016 TRD_RS02615 3345a2a6f592202e8d83f45a9e0db677 315 SUPERFAMILY SSF56281 4 266 7.6E-59 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS02615 3345a2a6f592202e8d83f45a9e0db677 315 Gene3D G3DSA:3.60.15.10 6 241 2.4E-42 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS02615 3345a2a6f592202e8d83f45a9e0db677 315 SMART SM00849 24 224 3.1E-32 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 524 2.1E-90 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 PANTHER PTHR23501 4 445 5.0E-184 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 SUPERFAMILY SSF103473 16 209 1.2E-74 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 SUPERFAMILY SSF103473 261 433 1.2E-74 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 SUPERFAMILY SSF103473 502 528 1.2E-74 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 Gene3D G3DSA:1.20.1250.20 31 202 1.1E-35 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 PANTHER PTHR23501:SF73 466 533 5.0E-184 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 PANTHER PTHR23501:SF73 4 445 5.0E-184 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 Gene3D G3DSA:1.20.1250.20 273 439 5.3E-21 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 Gene3D G3DSA:1.20.1250.20 506 533 5.3E-21 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 PANTHER PTHR23501 466 533 5.0E-184 T 22-04-2016 TRD_RS05450 fa079ef2921fec5dec3417cc864169e2 542 Pfam PF07690 Major Facilitator Superfamily 31 424 1.0E-55 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 Pfam PF12836 Helix-hairpin-helix motif 132 194 8.8E-23 T 22-04-2016 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 PANTHER PTHR21180 50 196 3.3E-33 T 22-04-2016 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 SUPERFAMILY SSF47781 125 198 1.22E-26 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 Pfam PF10531 SLBB domain 52 106 1.4E-11 T 22-04-2016 IPR019554 Soluble ligand binding domain TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 Gene3D G3DSA:1.10.150.320 126 196 1.6E-20 T 22-04-2016 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 Gene3D G3DSA:3.10.560.10 48 95 2.1E-6 T 22-04-2016 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 134 191 2.3E-16 T 22-04-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 SMART SM00278 173 192 890.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS03075 affb8f08d73323bf627574fb057eb448 199 SMART SM00278 143 162 0.0087 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS03690 371c243cb84cedf52186cc53519471fe 181 SUPERFAMILY SSF52540 7 169 5.84E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03690 371c243cb84cedf52186cc53519471fe 181 Gene3D G3DSA:3.40.50.300 5 169 3.6E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03690 371c243cb84cedf52186cc53519471fe 181 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 10 180 1.9E-29 T 22-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 PIRSF PIRSF001549 8 442 3.2E-133 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 22 392 23.896 T 22-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 SUPERFAMILY SSF52954 349 441 1.06E-23 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 8 440 28.776 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Pfam PF13393 Histidyl-tRNA synthetase 15 332 1.1E-56 T 22-04-2016 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Pfam PF03129 Anticodon binding domain 351 440 8.4E-19 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 PANTHER PTHR11476:SF1 10 446 1.2E-179 T 22-04-2016 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 PANTHER PTHR11476 10 446 1.2E-179 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 11 430 3.0E-121 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 SUPERFAMILY SSF55681 10 338 9.76E-81 T 22-04-2016 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Gene3D G3DSA:3.40.50.800 349 440 2.3E-28 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Gene3D G3DSA:3.30.930.10 250 341 2.0E-90 T 22-04-2016 TRD_RS04810 438e0189022afb6d44400e51de4f402f 455 Gene3D G3DSA:3.30.930.10 10 198 2.0E-90 T 22-04-2016 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PANTHER PTHR22855 1 270 1.9E-89 T 22-04-2016 TRD_RS05895 502e442193a066fa686408ee03513c74 273 SUPERFAMILY SSF52096 3 266 1.71E-78 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05895 502e442193a066fa686408ee03513c74 273 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 268 36.775 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 3 268 4.6E-100 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 Gene3D G3DSA:3.90.226.10 5 217 4.8E-42 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05895 502e442193a066fa686408ee03513c74 273 PANTHER PTHR22855:SF42 1 270 1.9E-89 T 22-04-2016 TRD_RS05895 502e442193a066fa686408ee03513c74 273 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 2 97 4.8E-46 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 146 155 8.3E-40 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 102 115 8.3E-40 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 83 99 8.3E-40 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 118 131 8.3E-40 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 37 48 8.3E-40 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05895 502e442193a066fa686408ee03513c74 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 62 80 8.3E-40 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 SMART SM00836 602 716 6.6E-42 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PANTHER PTHR11956 349 716 2.0E-141 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PANTHER PTHR11956 69 232 2.0E-141 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Hamap MF_00123 Arginine--tRNA ligase [argS]. 7 716 23.474 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF47323 597 716 9.16E-32 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:3.30.1360.70 77 128 9.2E-9 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF55190 78 133 9.16E-8 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PRINTS PR01038 Arginyl-tRNA synthetase signature 180 193 1.2E-10 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PRINTS PR01038 Arginyl-tRNA synthetase signature 156 172 1.2E-10 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PRINTS PR01038 Arginyl-tRNA synthetase signature 141 156 1.2E-10 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Pfam PF00750 tRNA synthetases class I (R) 124 262 4.0E-18 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Pfam PF00750 tRNA synthetases class I (R) 351 583 2.5E-33 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PANTHER PTHR11956:SF6 349 716 2.0E-141 T 22-04-2016 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 PANTHER PTHR11956:SF6 69 232 2.0E-141 T 22-04-2016 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:1.10.730.10 598 716 1.5E-35 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 349 716 4.1E-88 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:3.40.50.620 138 226 7.6E-88 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Gene3D G3DSA:3.40.50.620 336 595 7.6E-88 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 Pfam PF05746 DALR anticodon binding domain 602 716 1.4E-33 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF52374 343 595 1.31E-68 T 22-04-2016 TRD_RS02515 c1f353a0aba076453da7588d300ae8d0 716 SUPERFAMILY SSF52374 138 226 1.31E-68 T 22-04-2016 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Pfam PF11638 DnaA N-terminal domain 5 65 3.8E-11 T 22-04-2016 IPR024633 DnaA N-terminal domain TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:1.10.1750.10 359 453 3.0E-32 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PANTHER PTHR30050:SF2 2 456 1.3E-200 T 22-04-2016 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 SUPERFAMILY SSF48295 356 454 3.92E-31 T 22-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:1.10.8.60 285 352 1.1E-24 T 22-04-2016 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 SUPERFAMILY SSF52540 119 331 8.9E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 250 277 4.9E-48 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 413 432 4.9E-48 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 184 198 4.9E-48 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 152 172 4.9E-48 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 216 230 4.9E-48 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 SMART SM00760 363 432 7.9E-37 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 PANTHER PTHR30050 2 456 1.3E-200 T 22-04-2016 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Gene3D G3DSA:3.40.50.300 115 283 4.2E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 SMART SM00382 151 279 6.6E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 7 451 7.9E-163 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Pfam PF00308 Bacterial dnaA protein 119 336 2.8E-94 T 22-04-2016 IPR013317 Chromosomal replication initiator protein DnaA TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 ProSitePatterns PS01008 DnaA protein signature. 413 432 - T 22-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 4 454 32.067 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 TRD_RS05440 9f2e7fdef381144f012865287487d25e 465 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 365 432 4.0E-26 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 Gene3D G3DSA:1.10.3720.10 169 387 3.1E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 187 389 1.2E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 PANTHER PTHR30193:SF28 11 81 2.7E-59 T 22-04-2016 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 PANTHER PTHR30193 11 81 2.7E-59 T 22-04-2016 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 PANTHER PTHR30193:SF28 151 390 2.7E-59 T 22-04-2016 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 SUPERFAMILY SSF161098 167 375 2.22E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01190 e8ddbaed556f1e9f6bd8fc090a2d4b38 392 PANTHER PTHR30193 151 390 2.7E-59 T 22-04-2016 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 Gene3D G3DSA:3.40.50.1450 3 156 6.4E-41 T 22-04-2016 IPR023430 Peptidase HybD-like domain TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 16 27 1.4E-11 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 57 67 1.4E-11 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 68 84 1.4E-11 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 4 16 1.4E-11 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 PRINTS PR00446 Hydrogen uptake protein signature 35 52 1.4E-11 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 SUPERFAMILY SSF53163 3 154 7.06E-35 T 22-04-2016 IPR023430 Peptidase HybD-like domain TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 PANTHER PTHR30302 1 167 2.1E-28 T 22-04-2016 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 Pfam PF01750 Hydrogenase maturation protease 23 151 1.7E-15 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08755 401eed998a21f32f878516749ca8b0ff 172 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 152 3.1E-35 T 22-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 SUPERFAMILY SSF54665 5 168 1.7E-44 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 466 620 5.9E-52 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 SMART SM01008 21 145 6.6E-49 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 622 771 1.9E-67 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 374 465 1.9E-67 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 134 188 1.4E-45 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 298 371 1.4E-45 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.90.1170.50 5 133 1.7E-44 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 145 1.9E-28 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 163 704 4.7E-187 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 PANTHER PTHR11908 592 775 0.0 T 22-04-2016 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 PANTHER PTHR11908 6 574 0.0 T 22-04-2016 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 PANTHER PTHR11908:SF76 592 775 0.0 T 22-04-2016 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 PANTHER PTHR11908:SF76 6 574 0.0 T 22-04-2016 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 SUPERFAMILY SSF56003 137 771 6.15E-205 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08625 61760c885d7a0764297f958072b319fa 775 Gene3D G3DSA:3.30.365.10 189 296 4.5E-38 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 309 6.2E-110 T 22-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 394 3.1E-119 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 399 29.309 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 Pfam PF09190 DALR domain 346 396 1.5E-5 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 2.9E-29 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 2.9E-29 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 211 2.9E-29 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 2.9E-29 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 SUPERFAMILY SSF47323 335 397 1.05E-5 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 Gene3D G3DSA:1.20.120.640 319 394 6.6E-9 T 22-04-2016 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 PANTHER PTHR10890 1 395 1.5E-165 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 SUPERFAMILY SSF52374 2 311 1.39E-86 T 22-04-2016 TRD_RS08920 53c629122dab1d7ff4581354c38ce620 399 Gene3D G3DSA:3.40.50.620 18 307 4.5E-94 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS06840 d162151df08c478df25eb21dd7734300 322 Gene3D G3DSA:3.40.50.720 2 133 3.4E-16 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06840 d162151df08c478df25eb21dd7734300 322 SUPERFAMILY SSF51735 2 133 1.44E-11 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06840 d162151df08c478df25eb21dd7734300 322 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 69 9.1E-7 T 22-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08225 4c55f413cb6570d5d912ef6fe043e717 97 PANTHER PTHR15004:SF0 1 90 2.6E-31 T 22-04-2016 TRD_RS08225 4c55f413cb6570d5d912ef6fe043e717 97 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 7.6E-22 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 TRD_RS08225 4c55f413cb6570d5d912ef6fe043e717 97 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 8.7E-26 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 TRD_RS08225 4c55f413cb6570d5d912ef6fe043e717 97 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.3 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 TRD_RS08225 4c55f413cb6570d5d912ef6fe043e717 97 SUPERFAMILY SSF141000 3 91 2.62E-27 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 TRD_RS08225 4c55f413cb6570d5d912ef6fe043e717 97 PANTHER PTHR15004 1 90 2.6E-31 T 22-04-2016 TRD_RS13740 07ac607acfbe9796bf09385bed8931c7 266 SUPERFAMILY SSF53335 28 184 1.52E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS13740 07ac607acfbe9796bf09385bed8931c7 266 Pfam PF08241 Methyltransferase domain 41 134 7.8E-25 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 TRD_RS13740 07ac607acfbe9796bf09385bed8931c7 266 Gene3D G3DSA:3.40.50.150 27 166 3.0E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS13740 07ac607acfbe9796bf09385bed8931c7 266 PANTHER PTHR10108 37 143 7.1E-27 T 22-04-2016 TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Gene3D G3DSA:2.120.10.30 162 251 3.0E-46 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Gene3D G3DSA:2.120.10.30 252 392 1.4E-19 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Gene3D G3DSA:2.120.10.30 18 130 3.0E-46 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 SUPERFAMILY SSF53474 412 659 1.77E-67 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 SUPERFAMILY SSF82171 18 397 5.76E-54 T 22-04-2016 TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Pfam PF07676 WD40-like Beta Propeller Repeat 59 94 1.4E-7 T 22-04-2016 IPR011659 WD40-like Beta Propeller TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Pfam PF07676 WD40-like Beta Propeller Repeat 181 212 2.3E-8 T 22-04-2016 IPR011659 WD40-like Beta Propeller TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Pfam PF07676 WD40-like Beta Propeller Repeat 243 255 0.11 T 22-04-2016 IPR011659 WD40-like Beta Propeller TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Pfam PF07676 WD40-like Beta Propeller Repeat 103 136 1.7E-4 T 22-04-2016 IPR011659 WD40-like Beta Propeller TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 PANTHER PTHR11731 3 659 3.8E-163 T 22-04-2016 TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 PANTHER PTHR11731:SF90 3 659 3.8E-163 T 22-04-2016 TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Gene3D G3DSA:3.40.50.1820 405 659 1.7E-68 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS01245 08fccdd427851afc3a45af51f758a9fb 659 Pfam PF00326 Prolyl oligopeptidase family 450 659 2.9E-56 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 PANTHER PTHR11986 12 455 1.6E-146 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 SUPERFAMILY SSF53383 13 446 3.78E-108 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 Pfam PF00202 Aminotransferase class-III 40 375 1.5E-64 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 PANTHER PTHR11986:SF5 12 455 1.6E-146 T 22-04-2016 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 287 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 Gene3D G3DSA:3.40.640.10 78 332 6.7E-74 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 Gene3D G3DSA:3.90.1150.10 12 77 2.6E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS06670 68fa191da691064c694c0ed8526fa5ed 472 Gene3D G3DSA:3.90.1150.10 337 446 2.6E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS06960 bec2897c24f732e0d9c5f70745a8cf88 407 Gene3D G3DSA:1.20.1250.20 19 200 3.3E-16 T 22-04-2016 TRD_RS06960 bec2897c24f732e0d9c5f70745a8cf88 407 Gene3D G3DSA:1.20.1250.20 218 398 8.5E-21 T 22-04-2016 TRD_RS06960 bec2897c24f732e0d9c5f70745a8cf88 407 PANTHER PTHR23505 26 382 6.2E-28 T 22-04-2016 TRD_RS06960 bec2897c24f732e0d9c5f70745a8cf88 407 SUPERFAMILY SSF103473 19 401 8.63E-49 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS06960 bec2897c24f732e0d9c5f70745a8cf88 407 PANTHER PTHR23505:SF8 26 382 6.2E-28 T 22-04-2016 TRD_RS06960 bec2897c24f732e0d9c5f70745a8cf88 407 Pfam PF07690 Major Facilitator Superfamily 35 304 2.6E-18 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 Gene3D G3DSA:3.40.50.720 126 369 3.3E-78 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 Gene3D G3DSA:3.40.250.10 7 120 8.5E-36 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 Pfam PF00581 Rhodanese-like domain 23 113 4.6E-19 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 SUPERFAMILY SSF69572 120 388 1.44E-98 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 PANTHER PTHR10953:SF153 117 388 8.2E-130 T 22-04-2016 TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 SMART SM00450 20 117 7.5E-26 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 SUPERFAMILY SSF52821 8 123 4.45E-38 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 Pfam PF00899 ThiF family 132 365 4.3E-68 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 TRD_RS06140 d76c52d58429e4a536f1df7e4e44002f 398 PANTHER PTHR10953 117 388 8.2E-130 T 22-04-2016 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 8 466 50.705 T 22-04-2016 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 168 342 2.9E-8 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PANTHER PTHR10745 9 461 2.5E-208 T 22-04-2016 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 SUPERFAMILY SSF52954 361 466 1.81E-35 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 411 430 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 218 228 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 201 218 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 30 44 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 148 160 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 325 337 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PRINTS PR01043 Glycyl-tRNA synthetase signature 169 186 2.2E-54 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 Gene3D G3DSA:3.40.50.800 370 465 6.3E-40 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 11 244 5.6E-94 T 22-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 Pfam PF03129 Anticodon binding domain 374 463 5.7E-24 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 Gene3D G3DSA:3.30.930.10 134 369 5.5E-140 T 22-04-2016 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 Gene3D G3DSA:3.30.930.10 12 96 5.5E-140 T 22-04-2016 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 SUPERFAMILY SSF55681 8 377 1.19E-121 T 22-04-2016 TRD_RS04865 97c6c5e666d0a88065f7e59ffa310ffc 468 PANTHER PTHR10745:SF7 9 461 2.5E-208 T 22-04-2016 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 SUPERFAMILY SSF53623 102 310 1.11E-49 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Gene3D G3DSA:3.40.50.720 15 100 1.5E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 SUPERFAMILY SSF51984 15 100 1.96E-23 T 22-04-2016 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 PANTHER PTHR23135 8 445 1.6E-162 T 22-04-2016 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Pfam PF08245 Mur ligase middle domain 118 293 2.2E-23 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 SUPERFAMILY SSF53244 312 453 3.36E-44 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 13 458 34.494 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Gene3D G3DSA:3.40.1190.10 101 314 2.2E-63 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Gene3D G3DSA:3.90.190.20 315 453 1.0E-48 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Pfam PF01225 Mur ligase family, catalytic domain 16 114 3.9E-23 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 PANTHER PTHR23135:SF5 8 445 1.6E-162 T 22-04-2016 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 16 449 1.0E-125 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00295 a1a364f283cc307f35e727f0528724c8 462 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 399 2.4E-22 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 SUPERFAMILY SSF53223 7 186 1.38E-67 T 22-04-2016 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 Gene3D G3DSA:3.40.192.10 35 166 1.0E-57 T 22-04-2016 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 SMART SM00839 186 416 3.3E-111 T 22-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 184 416 9.7E-80 T 22-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 101 114 - T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PANTHER PTHR11606:SF16 9 419 7.0E-200 T 22-04-2016 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 217 237 1.2E-33 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 93 107 1.2E-33 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 175 197 1.2E-33 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 344 355 1.2E-33 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 38 164 3.5E-57 T 22-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 SUPERFAMILY SSF51735 184 418 1.42E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PIRSF PIRSF000185 4 419 1.1E-175 T 22-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 Gene3D G3DSA:3.40.50.720 184 418 2.6E-89 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06895 d46c5809d429ce36e1973bf3ff728508 419 PANTHER PTHR11606 9 419 7.0E-200 T 22-04-2016 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 328 2.0E-34 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 331 1.0E-27 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 SMART SM00382 53 202 4.0E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 PANTHER PTHR13779 1 339 2.9E-171 T 22-04-2016 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 353 167.722 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 SUPERFAMILY SSF52540 20 253 3.6E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 328 5.4E-140 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 SUPERFAMILY SSF46785 258 332 4.08E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 PANTHER PTHR13779:SF25 1 339 2.9E-171 T 22-04-2016 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 Gene3D G3DSA:1.10.8.60 186 257 1.3E-29 T 22-04-2016 TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 Gene3D G3DSA:1.10.10.10 259 329 2.2E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 Gene3D G3DSA:3.40.50.300 22 180 4.9E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03300 cea959b883724c3bd6beecbdfe2b9739 353 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 6 236 2.0E-113 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Pfam PF02381 MraZ protein, putative antitoxin-like 73 130 1.1E-17 T 22-04-2016 IPR020603 MraZ domain TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Pfam PF02381 MraZ protein, putative antitoxin-like 2 70 2.5E-18 T 22-04-2016 IPR020603 MraZ domain TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 SUPERFAMILY SSF89447 2 128 3.58E-46 T 22-04-2016 TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 138 2.9E-40 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 120 1.0E-33 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 142 49.122 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 TRD_RS00255 86bd5ffbc794a7e83b3b20ced3e40fc0 142 PANTHER PTHR34701 2 142 8.9E-54 T 22-04-2016 TRD_RS05300 5981be616c3e9989995a8f7266c77fc1 173 Gene3D G3DSA:2.30.110.10 39 124 4.2E-7 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 TRD_RS05300 5981be616c3e9989995a8f7266c77fc1 173 Pfam PF04075 Domain of unknown function (DUF385) 37 121 3.0E-18 T 22-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 TRD_RS05300 5981be616c3e9989995a8f7266c77fc1 173 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 38 124 1.7E-22 T 22-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 TRD_RS05300 5981be616c3e9989995a8f7266c77fc1 173 SUPERFAMILY SSF50475 33 132 6.63E-6 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 SUPERFAMILY SSF63418 18 101 1.31E-25 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Pfam PF08245 Mur ligase middle domain 111 298 9.6E-35 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 SUPERFAMILY SSF53244 320 456 1.83E-34 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Gene3D G3DSA:3.40.1390.10 18 94 6.1E-26 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 2 457 30.833 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 PANTHER PTHR23135:SF3 11 464 1.3E-144 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Gene3D G3DSA:3.90.190.20 320 458 4.7E-39 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 SUPERFAMILY SSF53623 107 314 9.81E-45 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Pfam PF02875 Mur ligase family, glutamate ligase domain 328 398 3.1E-13 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Pfam PF01225 Mur ligase family, catalytic domain 30 101 4.2E-12 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 PANTHER PTHR23135 11 464 1.3E-144 T 22-04-2016 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 456 1.8E-117 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00275 cda420dbbaf8d963a3d6bf5d9c7ce986 466 Gene3D G3DSA:3.40.1190.10 95 313 4.2E-58 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 92 - T 22-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 Pfam PF01872 RibD C-terminal domain 151 367 2.4E-55 T 22-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 PANTHER PTHR11079 5 213 1.4E-61 T 22-04-2016 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 PIRSF PIRSF006769 2 374 8.3E-135 T 22-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 103 5.0E-21 T 22-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 SUPERFAMILY SSF53597 150 370 1.57E-63 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 Gene3D G3DSA:3.40.140.10 6 132 4.0E-34 T 22-04-2016 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 150 371 3.3E-65 T 22-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 SUPERFAMILY SSF53927 7 148 1.49E-47 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 PANTHER PTHR11079:SF10 5 213 1.4E-61 T 22-04-2016 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 11 367 1.7E-112 T 22-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 TRD_RS02315 c5f266abb452e3a31de2a95ebf27bc62 381 Gene3D G3DSA:3.40.430.10 133 373 2.6E-81 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 375 5.2E-86 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 SMART SM00480 17 373 3.6E-94 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 PIRSF PIRSF000804 1 378 5.4E-100 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 SUPERFAMILY SSF55979 3 117 6.98E-21 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 2 120 5.1E-22 T 22-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 SUPERFAMILY SSF55979 249 375 9.81E-27 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 Gene3D G3DSA:3.10.150.10 2 122 9.8E-26 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 PANTHER PTHR30478 2 379 3.5E-108 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 Gene3D G3DSA:3.10.150.10 129 252 3.0E-32 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 Gene3D G3DSA:3.10.150.10 253 376 2.8E-30 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 247 1.2E-28 T 22-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 SUPERFAMILY SSF55979 130 248 2.36E-22 T 22-04-2016 TRD_RS03280 bb1479ccda36e30948b9462aa360a243 380 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 249 375 8.2E-23 T 22-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS05025 0b09dc2d82966bcffd4116620dd8c627 312 Pfam PF02096 60Kd inner membrane protein 26 213 5.3E-64 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 TRD_RS05025 0b09dc2d82966bcffd4116620dd8c627 312 PANTHER PTHR12428 2 311 5.5E-73 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 TRD_RS05025 0b09dc2d82966bcffd4116620dd8c627 312 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 24 213 5.4E-65 T 22-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal TRD_RS05025 0b09dc2d82966bcffd4116620dd8c627 312 PANTHER PTHR12428:SF14 2 311 5.5E-73 T 22-04-2016 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 8.2E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 8.2E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 271 294 8.2E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 50 69 8.2E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 SUPERFAMILY SSF53671 4 307 9.82E-94 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PANTHER PTHR11405 6 309 5.3E-130 T 22-04-2016 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 Gene3D G3DSA:3.40.50.1370 145 293 3.0E-51 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 154 303 7.9E-28 T 22-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PANTHER PTHR11405:SF16 6 309 5.3E-130 T 22-04-2016 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 265 270 1.2E-37 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 40 62 1.2E-37 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 287 301 1.2E-37 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 1.2E-37 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 1.2E-37 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 80 89 1.2E-37 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 6 306 3.9E-96 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 6 147 5.2E-43 T 22-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 Gene3D G3DSA:3.40.50.1370 6 144 6.4E-50 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 5 308 34.209 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS05910 a2403bcd6af92f1079db844e2d81541f 321 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 50 57 - T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 SUPERFAMILY SSF53448 258 530 1.03E-40 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 53 155 1.2E-17 T 22-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 SUPERFAMILY SSF160246 15 155 8.89E-32 T 22-04-2016 TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 PANTHER PTHR10587 158 403 3.0E-48 T 22-04-2016 TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 Gene3D G3DSA:3.90.550.10 255 494 3.5E-20 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 Pfam PF13641 Glycosyltransferase like family 2 257 481 2.4E-28 T 22-04-2016 TRD_RS05205 088774219cf5ab9ab6e3d927f6e6ba05 635 PANTHER PTHR10587:SF79 158 403 3.0E-48 T 22-04-2016 TRD_RS01745 c94390cc72ee2f2ff1e349f92a8b87d9 126 SUPERFAMILY SSF82649 4 118 4.36E-41 T 22-04-2016 TRD_RS01745 c94390cc72ee2f2ff1e349f92a8b87d9 126 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 3 87 2.4E-31 T 22-04-2016 TRD_RS01745 c94390cc72ee2f2ff1e349f92a8b87d9 126 PANTHER PTHR10093 2 117 1.3E-43 T 22-04-2016 TRD_RS01745 c94390cc72ee2f2ff1e349f92a8b87d9 126 Gene3D G3DSA:3.90.1010.10 4 118 8.0E-40 T 22-04-2016 TRD_RS01745 c94390cc72ee2f2ff1e349f92a8b87d9 126 Pfam PF01592 NifU-like N terminal domain 5 119 6.2E-31 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 TRD_RS08360 238c02bfb9fa6d63a1c5878f1018495d 309 Gene3D G3DSA:3.40.630.30 1 114 7.1E-17 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS08360 238c02bfb9fa6d63a1c5878f1018495d 309 SUPERFAMILY SSF55729 1 114 1.66E-17 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS08360 238c02bfb9fa6d63a1c5878f1018495d 309 SUPERFAMILY SSF55729 128 301 4.87E-13 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS08360 238c02bfb9fa6d63a1c5878f1018495d 309 Pfam PF00583 Acetyltransferase (GNAT) family 55 115 4.5E-8 T 22-04-2016 IPR000182 GNAT domain GO:0008080 TRD_RS08360 238c02bfb9fa6d63a1c5878f1018495d 309 Gene3D G3DSA:3.40.630.30 171 294 2.7E-14 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS02955 cfcf6e1e6f3df2fb3257b661f8895710 486 Gene3D G3DSA:3.40.718.10 9 352 5.8E-133 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS02955 cfcf6e1e6f3df2fb3257b661f8895710 486 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 235 254 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 TRD_RS02955 cfcf6e1e6f3df2fb3257b661f8895710 486 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 13 342 1.2E-107 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS02955 cfcf6e1e6f3df2fb3257b661f8895710 486 SUPERFAMILY SSF53659 9 346 1.1E-118 T 22-04-2016 TRD_RS02955 cfcf6e1e6f3df2fb3257b661f8895710 486 PANTHER PTHR11835 13 354 7.7E-164 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 TRD_RS02955 cfcf6e1e6f3df2fb3257b661f8895710 486 SMART SM01329 12 342 5.3E-165 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS07235 0df64bfc8b25d167a6f5c8d7a772f9d0 320 SUPERFAMILY SSF51679 20 304 1.34E-54 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS07235 0df64bfc8b25d167a6f5c8d7a772f9d0 320 Gene3D G3DSA:3.20.20.30 19 301 2.3E-56 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS07235 0df64bfc8b25d167a6f5c8d7a772f9d0 320 Pfam PF00296 Luciferase-like monooxygenase 19 286 4.0E-53 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS07235 0df64bfc8b25d167a6f5c8d7a772f9d0 320 PANTHER PTHR30011 19 315 2.8E-31 T 22-04-2016 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 PRINTS PR00474 Glutamate 5-kinase family signature 223 243 3.2E-9 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 3.2E-9 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 PRINTS PR00474 Glutamate 5-kinase family signature 169 196 3.2E-9 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 Gene3D G3DSA:3.40.1160.10 1 268 6.1E-56 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 Pfam PF00696 Amino acid kinase family 2 244 3.5E-33 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 PIRSF PIRSF000728 1 272 4.3E-65 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 PANTHER PTHR23342 1 277 1.9E-92 T 22-04-2016 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 PANTHER PTHR23342:SF1 1 277 1.9E-92 T 22-04-2016 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 TIGRFAM TIGR00761 argB: acetylglutamate kinase 1 247 2.6E-56 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS07085 9ef71ad64d2f377ff09f4d09d90f75b7 278 SUPERFAMILY SSF53633 2 270 4.19E-49 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF55186 549 716 1.1E-54 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Pfam PF01411 tRNA synthetases class II (A) 5 553 6.3E-191 T 22-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 873 170.136 T 22-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PANTHER PTHR11777:SF9 1 874 0.0 T 22-04-2016 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 650 693 1.9E-18 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF50447 451 549 1.45E-19 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Pfam PF02272 DHHA1 domain 797 866 7.0E-11 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PANTHER PTHR11777 1 874 0.0 T 22-04-2016 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF55681 2 238 3.4E-81 T 22-04-2016 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 Gene3D G3DSA:3.30.930.10 1 234 2.5E-88 T 22-04-2016 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 852 3.9E-277 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 293 306 5.8E-25 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 192 203 5.8E-25 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 69 80 5.8E-25 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 269 285 5.8E-25 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 219 232 5.8E-25 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SUPERFAMILY SSF101353 239 440 3.92E-67 T 22-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 TRD_RS03330 67a9c5837f11c0b8b5848b6c4a4a12e8 878 SMART SM00863 650 693 3.4E-20 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 TRD_RS06585 48c46f343095017f0b548503460d464c 238 PANTHER PTHR24220:SF568 3 234 1.3E-97 T 22-04-2016 TRD_RS06585 48c46f343095017f0b548503460d464c 238 Pfam PF00005 ABC transporter 17 162 3.5E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS06585 48c46f343095017f0b548503460d464c 238 Gene3D G3DSA:3.40.50.300 1 232 6.9E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06585 48c46f343095017f0b548503460d464c 238 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS06585 48c46f343095017f0b548503460d464c 238 SMART SM00382 26 233 7.9E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS06585 48c46f343095017f0b548503460d464c 238 PANTHER PTHR24220 3 234 1.3E-97 T 22-04-2016 TRD_RS06585 48c46f343095017f0b548503460d464c 238 SUPERFAMILY SSF52540 2 232 4.4E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 PANTHER PTHR10909 10 397 1.3E-130 T 22-04-2016 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 Gene3D G3DSA:1.10.540.10 7 119 9.1E-30 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 SUPERFAMILY SSF47203 227 384 3.7E-52 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 377 1.1E-45 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 PANTHER PTHR10909:SF305 10 397 1.3E-130 T 22-04-2016 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 Gene3D G3DSA:2.40.110.10 122 218 1.8E-34 T 22-04-2016 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 2.9E-21 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 117 1.1E-25 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 SUPERFAMILY SSF56645 6 242 1.7E-72 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 TRD_RS00560 eba2d066ba5ade943a80690f0dbcd868 427 Gene3D G3DSA:1.20.140.10 219 383 4.4E-62 T 22-04-2016 TRD_RS09170 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 Pfam PF00753 Metallo-beta-lactamase superfamily 39 241 1.8E-14 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS09170 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 PANTHER PTHR30619 1 292 4.2E-88 T 22-04-2016 TRD_RS09170 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 SMART SM00849 40 244 8.4E-6 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS09170 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 Gene3D G3DSA:3.60.15.10 30 284 6.7E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS09170 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 SUPERFAMILY SSF56281 29 292 9.57E-48 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS09170 ff7f6b40e7b5d108b7f9763a84b9e6c9 293 PANTHER PTHR30619:SF2 1 292 4.2E-88 T 22-04-2016 TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 PANTHER PTHR37806 167 418 2.0E-17 T 22-04-2016 TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Gene3D G3DSA:3.10.350.10 67 113 1.1E-15 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Gene3D G3DSA:3.10.350.10 120 165 2.4E-16 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Gene3D G3DSA:3.10.350.10 181 226 7.7E-16 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Pfam PF01476 LysM domain 69 112 3.3E-13 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Pfam PF01476 LysM domain 122 165 4.9E-11 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Pfam PF01476 LysM domain 183 226 2.7E-12 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 Pfam PF13529 Peptidase_C39 like family 238 386 2.0E-22 T 22-04-2016 TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 SUPERFAMILY SSF54106 121 165 2.62E-11 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 SMART SM00257 182 226 3.9E-16 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 SMART SM00257 68 112 2.6E-14 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 SMART SM00257 121 165 5.5E-13 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 SUPERFAMILY SSF54106 67 112 9.02E-12 T 22-04-2016 IPR018392 LysM domain TRD_RS13475 33427d236cf0f85daef7f2259c0a4cae 419 SUPERFAMILY SSF54106 181 226 4.58E-11 T 22-04-2016 IPR018392 LysM domain TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 Hamap MF_00050 Elongation factor Ts [tsf]. 1 181 34.813 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 PANTHER PTHR11741 3 177 5.0E-70 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 Gene3D G3DSA:1.10.8.10 2 54 1.0E-23 T 22-04-2016 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 SUPERFAMILY SSF54713 57 177 1.05E-38 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 SUPERFAMILY SSF46934 2 55 3.47E-17 T 22-04-2016 IPR009060 UBA-like GO:0005515 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 Pfam PF00889 Elongation factor TS 54 121 1.5E-13 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 Pfam PF00889 Elongation factor TS 127 177 2.0E-9 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 ProSitePatterns PS01127 Elongation factor Ts signature 2. 76 86 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 Gene3D G3DSA:3.30.479.20 57 178 1.4E-35 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 TRD_RS04595 db6e51834d06b2d99b507f12ceffb655 181 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 15 510 6.0E-90 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PANTHER PTHR11206 1 16 3.6E-36 T 22-04-2016 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PANTHER PTHR11206 225 450 3.6E-36 T 22-04-2016 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PANTHER PTHR11206 509 521 3.6E-36 T 22-04-2016 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PIRSF PIRSF002869 9 522 8.6E-104 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 Pfam PF03023 MviN-like protein 39 464 7.4E-81 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PANTHER PTHR11206:SF90 1 16 3.6E-36 T 22-04-2016 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PANTHER PTHR11206:SF90 225 450 3.6E-36 T 22-04-2016 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PANTHER PTHR11206:SF90 509 521 3.6E-36 T 22-04-2016 TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 167 188 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 63 79 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 44 63 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 143 167 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 267 293 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 417 434 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS03900 a29f82d395835f06aedb5490d78cc3f9 539 PRINTS PR01806 Virulence factor MviN signature 365 384 3.2E-27 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08305 710eebcc71cab860388a6950e36520da 745 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 203 721 1.4E-157 T 22-04-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 PANTHER PTHR10996 191 554 2.8E-143 T 22-04-2016 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 342 369 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 419 435 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site TRD_RS08305 710eebcc71cab860388a6950e36520da 745 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 390 412 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.40.50.720 202 315 1.6E-40 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF56784 60 155 1.91E-10 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF56784 7 18 1.91E-10 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.40.50.720 316 480 1.4E-63 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 204 511 5.9E-34 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.30.1330.90 519 598 1.2E-8 T 22-04-2016 IPR029009 Allosteric substrate binding domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.30.70.260 635 717 2.0E-21 T 22-04-2016 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF51735 296 480 1.21E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF55021 647 720 3.75E-19 T 22-04-2016 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 PANTHER PTHR10996:SF20 191 554 2.8E-143 T 22-04-2016 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.40.50.1000 62 155 7.2E-6 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Gene3D G3DSA:3.40.50.1000 7 22 7.2E-6 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 305 479 5.5E-63 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF143548 520 605 3.66E-8 T 22-04-2016 IPR029009 Allosteric substrate binding domain TRD_RS08305 710eebcc71cab860388a6950e36520da 745 Pfam PF01842 ACT domain 648 711 1.4E-11 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 TRD_RS08305 710eebcc71cab860388a6950e36520da 745 SUPERFAMILY SSF52283 202 333 2.08E-35 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 42 459 1.4E-120 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 220 452 4.0E-66 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PANTHER PTHR30081 39 124 4.1E-116 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PANTHER PTHR30081 191 474 4.1E-116 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 304 327 1.4E-8 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.4E-8 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 1 20 1.4E-8 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PRINTS PR00702 Acriflavin resistance protein family signature 357 381 1.4E-8 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PANTHER PTHR30081:SF1 39 124 4.1E-116 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 PANTHER PTHR30081:SF1 191 474 4.1E-116 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 SUPERFAMILY SSF82866 265 465 1.31E-37 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 Pfam PF07549 SecD/SecF GG Motif 40 60 1.7E-4 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 Gene3D G3DSA:1.20.1640.10 268 466 1.0E-26 T 22-04-2016 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 475 38.719 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 TRD_RS02970 506e0f4ac8ac768d947cd921f5a654e1 489 Pfam PF02355 Protein export membrane protein 288 462 1.8E-15 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 Pfam PF07687 Peptidase dimerisation domain 190 299 1.4E-23 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 Gene3D G3DSA:3.40.630.10 342 401 6.8E-74 T 22-04-2016 TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 Gene3D G3DSA:3.40.630.10 19 202 6.8E-74 T 22-04-2016 TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 25 390 1.2E-83 T 22-04-2016 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase GO:0016813 TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 Gene3D G3DSA:3.30.70.360 203 299 7.8E-27 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 SUPERFAMILY SSF55031 195 299 2.88E-23 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 Pfam PF01546 Peptidase family M20/M25/M40 86 397 2.8E-40 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 SUPERFAMILY SSF53187 17 193 1.97E-69 T 22-04-2016 TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 SUPERFAMILY SSF53187 319 400 1.97E-69 T 22-04-2016 TRD_RS04950 fd8183f0a08ec4007fe7adf8f180569c 404 PANTHER PTHR11014 9 404 3.5E-97 T 22-04-2016 TRD_RS03855 5c73ba88f13c91e4e675a521366c3c7f 317 PANTHER PTHR10366:SF399 2 307 3.4E-130 T 22-04-2016 TRD_RS03855 5c73ba88f13c91e4e675a521366c3c7f 317 Gene3D G3DSA:3.90.25.10 169 311 5.0E-51 T 22-04-2016 TRD_RS03855 5c73ba88f13c91e4e675a521366c3c7f 317 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 301 3.9E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03855 5c73ba88f13c91e4e675a521366c3c7f 317 SUPERFAMILY SSF51735 2 308 3.96E-92 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03855 5c73ba88f13c91e4e675a521366c3c7f 317 Gene3D G3DSA:3.40.50.720 2 168 3.1E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03855 5c73ba88f13c91e4e675a521366c3c7f 317 PANTHER PTHR10366 2 307 3.4E-130 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:1.10.10.350 390 489 4.7E-25 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:3.90.800.10 71 196 5.7E-44 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 6 488 3.8E-162 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 6 490 33.967 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 205 4.930042E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 4.930042E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 219 4.930042E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 4.930042E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 4.930042E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:1.10.8.70 334 388 1.3E-5 T 22-04-2016 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 323 5.1E-102 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 SUPERFAMILY SSF52374 6 316 1.58E-116 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:1.10.1160.10 251 331 6.6E-33 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:3.40.50.620 197 246 1.6E-48 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 Gene3D G3DSA:3.40.50.620 6 70 1.6E-48 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PANTHER PTHR11451:SF41 5 356 6.1E-114 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PANTHER PTHR11451:SF41 440 458 6.1E-114 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PANTHER PTHR11451 5 356 6.1E-114 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 PANTHER PTHR11451 440 458 6.1E-114 T 22-04-2016 TRD_RS08835 039ec6866dae8e7f5ca8f10e5764e370 506 SUPERFAMILY SSF48163 317 490 2.35E-41 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 TRD_RS03770 961c51473e2f3b56926d8fa1bbb6ce91 242 Hamap MF_00801 Endonuclease V [nfi]. 17 238 32.638 T 22-04-2016 IPR007581 Endonuclease V GO:0004519|GO:0006281 TRD_RS03770 961c51473e2f3b56926d8fa1bbb6ce91 242 PANTHER PTHR28511 1 235 8.9E-69 T 22-04-2016 TRD_RS03770 961c51473e2f3b56926d8fa1bbb6ce91 242 Pfam PF04493 Endonuclease V 26 229 5.8E-71 T 22-04-2016 IPR007581 Endonuclease V GO:0004519|GO:0006281 TRD_RS03770 961c51473e2f3b56926d8fa1bbb6ce91 242 PANTHER PTHR28511:SF1 1 235 8.9E-69 T 22-04-2016 TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 Gene3D G3DSA:3.90.650.10 160 325 6.7E-21 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 SUPERFAMILY SSF56042 156 341 2.54E-32 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 SUPERFAMILY SSF55326 29 144 9.42E-18 T 22-04-2016 TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 PANTHER PTHR30303:SF2 8 345 5.2E-124 T 22-04-2016 TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 Gene3D G3DSA:3.30.1330.10 24 146 1.5E-16 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 52 145 2.2E-8 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 PANTHER PTHR30303 8 345 5.2E-124 T 22-04-2016 TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 PIRSF PIRSF005644 5 345 1.5E-84 T 22-04-2016 IPR011854 Hydrogenase expression/formation protein HypE TRD_RS00115 e267b12270fea59f2b25fd3726de6889 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 162 320 1.2E-21 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 13 206 38.75 T 22-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 167 179 - T 22-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 Gene3D G3DSA:3.30.230.40 13 100 1.3E-33 T 22-04-2016 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 42 185 9.5E-59 T 22-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 PANTHER PTHR23133 5 203 3.6E-87 T 22-04-2016 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 PANTHER PTHR23133:SF2 5 203 3.6E-87 T 22-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 SUPERFAMILY SSF54211 13 95 3.32E-29 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 SUPERFAMILY SSF54211 98 190 4.86E-30 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 72 85 - T 22-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 TRD_RS02000 b61b2057e884b053d5cb4203e5c9556d 210 Gene3D G3DSA:3.30.230.40 101 206 4.6E-29 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF81653 209 306 1.28E-25 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Pfam PF00403 Heavy-metal-associated domain 20 79 8.8E-9 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 157 694 5.0E-160 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.40.50.1000 519 660 7.1E-43 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.40.50.1000 372 412 7.1E-43 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 256 270 1.7E-22 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 549 1.7E-22 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 398 412 1.7E-22 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 516 527 1.7E-22 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 627 1.7E-22 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 591 610 1.7E-22 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 400 406 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:2.70.150.10 201 307 2.6E-24 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 138 694 2.5E-120 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.40.1110.10 413 518 2.4E-13 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 PANTHER PTHR24093 5 674 1.1E-149 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 157 694 5.2E-134 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Pfam PF00702 haloacid dehalogenase-like hydrolase 396 605 5.6E-37 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Pfam PF00122 E1-E2 ATPase 177 389 8.9E-58 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF55008 13 80 4.06E-13 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 178 432 8.8E-30 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 494 670 7.1E-42 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 Gene3D G3DSA:3.30.70.100 13 80 2.1E-12 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF56784 397 416 7.7E-49 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF56784 488 691 7.7E-49 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF81665 307 392 1.96E-9 T 22-04-2016 TRD_RS07140 477613ec07c6a9f629fc14abf2c2e23f 699 SUPERFAMILY SSF81665 159 210 1.96E-9 T 22-04-2016 TRD_RS06420 a2e155a29aa073f2cddd91e6ada16ccf 731 Pfam PF01590 GAF domain 53 179 6.2E-6 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS06420 a2e155a29aa073f2cddd91e6ada16ccf 731 SMART SM00065 44 191 0.0039 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS06420 a2e155a29aa073f2cddd91e6ada16ccf 731 Gene3D G3DSA:3.30.450.40 52 181 1.6E-8 T 22-04-2016 IPR029016 GAF domain-like TRD_RS06420 a2e155a29aa073f2cddd91e6ada16ccf 731 SUPERFAMILY SSF55781 50 183 1.4E-9 T 22-04-2016 IPR029016 GAF domain-like TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 PANTHER PTHR23321 1 88 6.3E-46 T 22-04-2016 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.218 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 SUPERFAMILY SSF47060 3 88 3.53E-36 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 88 5.8E-40 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 Gene3D G3DSA:1.10.287.10 3 88 1.1E-39 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 2.0E-26 T 22-04-2016 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 Pfam PF00312 Ribosomal protein S15 8 88 7.5E-38 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS02855 fc8f3378b584c643e0fe76ee020090ed 89 SMART SM01387 8 88 5.5E-53 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 Gene3D G3DSA:2.130.10.140 23 293 8.9E-76 T 22-04-2016 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 Pfam PF15902 Sortilin, neurotensin receptor 3, 566 683 9.6E-9 T 22-04-2016 IPR031778 Sortilin, N-terminal TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 Gene3D G3DSA:2.130.10.10 470 572 9.4E-40 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 Gene3D G3DSA:2.130.10.10 294 371 9.4E-40 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 Gene3D G3DSA:2.130.10.10 573 691 3.3E-29 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 SUPERFAMILY SSF110296 285 371 4.45E-57 T 22-04-2016 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 SUPERFAMILY SSF110296 482 690 4.45E-57 T 22-04-2016 TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 SUPERFAMILY SSF50939 148 386 4.9E-67 T 22-04-2016 IPR011040 Sialidases TRD_RS08870 9a5a3b77201d32b6bbe27f72c4218d30 1062 SUPERFAMILY SSF50939 11 118 4.9E-67 T 22-04-2016 IPR011040 Sialidases TRD_RS02300 b372c912b67aac0404a6d4c047ad72e8 279 PANTHER PTHR30348 1 275 6.8E-79 T 22-04-2016 TRD_RS02300 b372c912b67aac0404a6d4c047ad72e8 279 SUPERFAMILY SSF117396 2 270 3.66E-72 T 22-04-2016 IPR002763 Protein of unknown function DUF72 TRD_RS02300 b372c912b67aac0404a6d4c047ad72e8 279 PANTHER PTHR30348:SF4 1 275 6.8E-79 T 22-04-2016 TRD_RS02300 b372c912b67aac0404a6d4c047ad72e8 279 Gene3D G3DSA:3.20.20.410 2 274 6.0E-85 T 22-04-2016 IPR002763 Protein of unknown function DUF72 TRD_RS02300 b372c912b67aac0404a6d4c047ad72e8 279 Pfam PF01904 Protein of unknown function DUF72 18 266 1.1E-60 T 22-04-2016 IPR002763 Protein of unknown function DUF72 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 SUPERFAMILY SSF64263 1 116 8.11E-43 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 PANTHER PTHR14413:SF5 1 116 3.9E-50 T 22-04-2016 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 Gene3D G3DSA:3.90.1030.10 2 116 1.4E-42 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 116 6.8E-36 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.112 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 Pfam PF01196 Ribosomal protein L17 20 116 2.4E-32 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04385 75172a7613515d707537b424caf0ff3f 117 PANTHER PTHR14413 1 116 3.9E-50 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 SMART SM00271 4 61 7.1E-33 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 Gene3D G3DSA:1.10.287.110 1 95 2.7E-34 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PANTHER PTHR24078 4 91 8.2E-112 T 22-04-2016 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PANTHER PTHR24078 108 335 8.2E-112 T 22-04-2016 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 SUPERFAMILY SSF49493 141 239 5.36E-19 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 Pfam PF01556 DnaJ C terminal domain 144 317 1.6E-42 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PANTHER PTHR24078:SF190 4 91 8.2E-112 T 22-04-2016 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PANTHER PTHR24078:SF190 108 335 8.2E-112 T 22-04-2016 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 SUPERFAMILY SSF46565 1 94 7.85E-34 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 Gene3D G3DSA:2.60.260.20 136 236 1.8E-21 T 22-04-2016 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 340 29.889 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 Gene3D G3DSA:2.60.260.20 241 318 8.2E-24 T 22-04-2016 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 Pfam PF00226 DnaJ domain 5 66 1.7E-27 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 61 80 1.5E-26 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 7 25 1.5E-26 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 41 61 1.5E-26 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 PRINTS PR00625 DnaJ domain signature 25 40 1.5E-26 T 22-04-2016 IPR001623 DnaJ domain TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 SUPERFAMILY SSF49493 243 328 1.83E-24 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 TRD_RS03035 27aaa742a8d8cd7bbd26f9aae84aec84 341 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 22-04-2016 IPR018253 DnaJ domain, conserved site TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SUPERFAMILY SSF55781 6 175 3.05E-34 T 22-04-2016 IPR029016 GAF domain-like TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 PANTHER PTHR24423 14 38 1.3E-36 T 22-04-2016 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 Pfam PF07568 Histidine kinase 343 414 4.7E-16 T 22-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SMART SM00065 197 331 1.8E-4 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SMART SM00065 23 172 6.9E-23 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 PANTHER PTHR24423:SF472 334 532 1.3E-36 T 22-04-2016 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 PANTHER PTHR24423:SF472 14 38 1.3E-36 T 22-04-2016 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SMART SM00911 343 420 0.0013 T 22-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 PANTHER PTHR24423 334 532 1.3E-36 T 22-04-2016 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SUPERFAMILY SSF55874 399 532 8.38E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 Pfam PF13185 GAF domain 22 163 1.1E-19 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 Gene3D G3DSA:3.30.450.40 173 332 8.2E-15 T 22-04-2016 IPR029016 GAF domain-like TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 Gene3D G3DSA:3.30.450.40 7 172 2.4E-40 T 22-04-2016 IPR029016 GAF domain-like TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 Gene3D G3DSA:3.30.565.10 398 532 4.0E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SUPERFAMILY SSF55781 179 344 8.91E-16 T 22-04-2016 IPR029016 GAF domain-like TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 SMART SM00387 437 536 1.7E-9 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS01260 909974eadaa2b711ea8fa7ad67a56f6b 545 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 442 533 3.3E-12 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 PIRSF PIRSF000386 1 242 2.7E-93 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 226 6.4E-84 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 PANTHER PTHR32125:SF1 1 227 1.1E-103 T 22-04-2016 TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 PANTHER PTHR32125 1 227 1.1E-103 T 22-04-2016 TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 3.1E-61 T 22-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 SUPERFAMILY SSF75217 1 239 5.36E-94 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 Gene3D G3DSA:3.40.1280.10 1 160 3.4E-65 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 268 104.145 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 TRD_RS01090 ab61cb8eba6db6871008b1eaab1b87b0 268 Gene3D G3DSA:1.10.1270.20 161 239 3.5E-32 T 22-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 TRD_RS01450 d0ff1e0282c3394a46822548a7856a0e 532 PANTHER PTHR11895 19 532 2.9E-158 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS01450 d0ff1e0282c3394a46822548a7856a0e 532 ProSitePatterns PS00571 Amidases signature. 226 257 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS01450 d0ff1e0282c3394a46822548a7856a0e 532 SUPERFAMILY SSF75304 80 524 3.92E-141 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS01450 d0ff1e0282c3394a46822548a7856a0e 532 Pfam PF01425 Amidase 99 514 9.9E-117 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS01450 d0ff1e0282c3394a46822548a7856a0e 532 Gene3D G3DSA:3.90.1300.10 81 526 3.7E-149 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS06595 b622c5e1697f9ce891c5a9993908e6d1 445 Gene3D G3DSA:3.40.50.2300 71 204 2.2E-28 T 22-04-2016 TRD_RS06595 b622c5e1697f9ce891c5a9993908e6d1 445 Gene3D G3DSA:3.40.50.2300 359 406 2.2E-28 T 22-04-2016 TRD_RS06595 b622c5e1697f9ce891c5a9993908e6d1 445 SUPERFAMILY SSF53822 72 427 1.86E-66 T 22-04-2016 IPR028082 Periplasmic binding protein-like I TRD_RS06595 b622c5e1697f9ce891c5a9993908e6d1 445 PANTHER PTHR30483 71 443 8.7E-51 T 22-04-2016 TRD_RS06595 b622c5e1697f9ce891c5a9993908e6d1 445 Gene3D G3DSA:3.40.50.2300 210 358 3.3E-23 T 22-04-2016 TRD_RS06595 b622c5e1697f9ce891c5a9993908e6d1 445 Pfam PF13458 Periplasmic binding protein 73 405 5.1E-56 T 22-04-2016 IPR028081 Leucine-binding protein domain TRD_RS08690 d0dd18fa6e1d408a3354bbf13ffe3381 275 SUPERFAMILY SSF161098 69 259 2.22E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08690 d0dd18fa6e1d408a3354bbf13ffe3381 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 273 4.0E-30 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08690 d0dd18fa6e1d408a3354bbf13ffe3381 275 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 3 50 2.6E-6 T 22-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain TRD_RS08690 d0dd18fa6e1d408a3354bbf13ffe3381 275 PANTHER PTHR30465:SF10 2 274 1.4E-109 T 22-04-2016 TRD_RS08690 d0dd18fa6e1d408a3354bbf13ffe3381 275 PANTHER PTHR30465 2 274 1.4E-109 T 22-04-2016 TRD_RS08690 d0dd18fa6e1d408a3354bbf13ffe3381 275 Gene3D G3DSA:1.10.3720.10 65 270 1.7E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 SUPERFAMILY SSF111304 10 203 9.94E-75 T 22-04-2016 IPR023627 Recombination protein RecR TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 Hamap MF_00017 Recombination protein RecR [recR]. 1 203 102.145 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 Pfam PF02132 RecR protein 44 83 2.6E-18 T 22-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 TIGRFAM TIGR00615 recR: recombination protein RecR 10 201 1.1E-80 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 Pfam PF13662 Toprim domain 86 174 3.4E-25 T 22-04-2016 IPR006171 Toprim domain TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 SMART SM00493 85 170 3.9E-14 T 22-04-2016 IPR006171 Toprim domain TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 PANTHER PTHR30446 6 203 4.9E-113 T 22-04-2016 TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 PANTHER PTHR30446:SF0 6 203 4.9E-113 T 22-04-2016 TRD_RS00990 65b7ed5b2462b89c516f90468781e23b 203 ProSitePatterns PS01300 RecR protein signature. 62 83 - T 22-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 PANTHER PTHR11986 43 459 1.5E-160 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 SUPERFAMILY SSF53383 24 453 8.29E-127 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 Gene3D G3DSA:3.40.640.10 78 336 2.2E-86 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 Gene3D G3DSA:3.90.1150.10 337 453 1.3E-36 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 PIRSF PIRSF000521 34 454 2.7E-39 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 262 299 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05125 2efb54e31c37691463b93ec7e5a2b8f3 464 Pfam PF00202 Aminotransferase class-III 41 451 6.9E-115 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 PANTHER PTHR20941 10 282 1.1E-116 T 22-04-2016 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 SUPERFAMILY SSF51717 19 279 2.09E-95 T 22-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 Pfam PF00809 Pterin binding enzyme 28 262 5.5E-81 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 61 74 - T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 PANTHER PTHR20941:SF1 10 282 1.1E-116 T 22-04-2016 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 27 276 1.8E-91 T 22-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 TRD_RS06225 ebdecb0c911bda121dde1d3efd60df7d 282 Gene3D G3DSA:3.20.20.20 19 278 1.9E-106 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 Pfam PF01957 NfeD-like C-terminal, partner-binding 302 440 5.8E-32 T 22-04-2016 IPR002810 NfeD-like, C-terminal domain TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 Gene3D G3DSA:2.40.50.140 383 440 6.2E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 PANTHER PTHR33507 1 442 9.2E-144 T 22-04-2016 TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 SUPERFAMILY SSF52096 31 201 6.22E-29 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 Gene3D G3DSA:3.90.226.10 176 203 1.2E-19 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 Gene3D G3DSA:3.90.226.10 33 135 1.2E-19 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 PANTHER PTHR33507:SF1 1 442 9.2E-144 T 22-04-2016 TRD_RS05925 d916af80972c2c1e248a6c2506744225 446 SUPERFAMILY SSF141322 373 440 6.28E-13 T 22-04-2016 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 366 383 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 29 51 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 135 157 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 343 354 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 107 122 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 165 187 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 188 207 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 8 24 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PRINTS PR00477 Phosphoglycerate kinase family signature 310 335 1.0E-83 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 SUPERFAMILY SSF53748 2 389 1.0E-142 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 Gene3D G3DSA:3.40.50.1270 177 378 3.9E-76 T 22-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 13 23 - T 22-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 3 390 40.347 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PIRSF PIRSF000724 1 392 2.8E-140 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 Gene3D G3DSA:3.40.50.1260 2 176 1.5E-69 T 22-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 Pfam PF00162 Phosphoglycerate kinase 4 379 3.0E-145 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS03565 7c82d975c14ebf8f381515795fea53d8 392 PANTHER PTHR11406 2 388 7.8E-185 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 ProSitePatterns PS00150 Acylphosphatase signature 1. 8 18 - T 22-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Gene3D G3DSA:3.30.70.100 3 88 3.8E-27 T 22-04-2016 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 PANTHER PTHR10029:SF4 6 749 0.0 T 22-04-2016 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Pfam PF01300 Telomere recombination 210 380 2.6E-42 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Pfam PF07503 HypF finger 106 139 8.1E-18 T 22-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Pfam PF07503 HypF finger 156 188 7.0E-16 T 22-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 SUPERFAMILY SSF54975 3 88 5.01E-26 T 22-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Pfam PF00708 Acylphosphatase 4 88 5.6E-25 T 22-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 6 742 6.3E-230 T 22-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 SUPERFAMILY SSF53067 429 531 2.51E-10 T 22-04-2016 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 SUPERFAMILY SSF53067 596 744 2.51E-10 T 22-04-2016 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Pfam PF00814 Glycoprotease family 598 719 1.5E-6 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 Gene3D G3DSA:3.90.870.10 199 369 9.7E-40 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 PANTHER PTHR10029 6 749 0.0 T 22-04-2016 TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 SUPERFAMILY SSF55821 174 392 2.66E-42 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain TRD_RS08705 6718ad7fe09776b1cd01f945a110c7fb 749 PIRSF PIRSF006256 1 749 7.1E-265 T 22-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 TRD_RS00845 e62370bc9355664829b57fc0eb8c1350 242 SUPERFAMILY SSF53067 8 106 7.48E-26 T 22-04-2016 TRD_RS00845 e62370bc9355664829b57fc0eb8c1350 242 Gene3D G3DSA:3.30.420.40 7 135 2.4E-32 T 22-04-2016 TRD_RS00845 e62370bc9355664829b57fc0eb8c1350 242 Pfam PF00814 Glycoprotease family 35 136 2.0E-25 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00845 e62370bc9355664829b57fc0eb8c1350 242 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 8 218 8.8E-43 T 22-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 TRD_RS00845 e62370bc9355664829b57fc0eb8c1350 242 PANTHER PTHR11735:SF11 7 141 5.2E-24 T 22-04-2016 TRD_RS00845 e62370bc9355664829b57fc0eb8c1350 242 PANTHER PTHR11735 7 141 5.2E-24 T 22-04-2016 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Pfam PF00202 Aminotransferase class-III 81 391 1.1E-56 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Gene3D G3DSA:3.40.640.10 121 368 1.7E-63 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Gene3D G3DSA:3.90.1150.10 372 485 1.9E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 Gene3D G3DSA:3.90.1150.10 50 120 1.9E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 PANTHER PTHR11986 1 421 1.2E-139 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 PANTHER PTHR11986 444 493 1.2E-139 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 SUPERFAMILY SSF53383 54 485 2.7E-102 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 280 316 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 PANTHER PTHR11986:SF5 1 421 1.2E-139 T 22-04-2016 TRD_RS07530 f08e4b9b0bf7fd7ad4e05f0289477f24 498 PANTHER PTHR11986:SF5 444 493 1.2E-139 T 22-04-2016 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 PANTHER PTHR20857 2 215 5.2E-65 T 22-04-2016 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 Gene3D G3DSA:3.20.20.70 10 215 3.1E-71 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 14 209 7.3E-64 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 12 214 29.142 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 PANTHER PTHR20857:SF15 2 215 5.2E-65 T 22-04-2016 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 SUPERFAMILY SSF51391 10 213 2.75E-63 T 22-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01845 ac4916ee8f38ae45cbfb96eb18c1268d 222 Pfam PF02581 Thiamine monophosphate synthase/TENI 15 196 1.9E-61 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 Gene3D G3DSA:2.40.30.10 297 359 2.5E-11 T 22-04-2016 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 PANTHER PTHR11933 6 360 1.1E-116 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 10 352 33.63 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 PANTHER PTHR11933:SF10 6 360 1.1E-116 T 22-04-2016 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 11 350 1.6E-71 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 Pfam PF03054 tRNA methyl transferase 11 350 8.6E-89 T 22-04-2016 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 Gene3D G3DSA:2.30.30.280 223 280 1.0E-11 T 22-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 SUPERFAMILY SSF52402 9 251 1.48E-46 T 22-04-2016 TRD_RS04985 48b6e02eb03c4bcd70b039f51c2d258f 370 Gene3D G3DSA:3.40.50.620 7 206 7.2E-72 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 SUPERFAMILY SSF52540 4 226 1.24E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 PANTHER PTHR24220:SF523 8 226 3.2E-90 T 22-04-2016 TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 Gene3D G3DSA:3.40.50.300 3 224 2.0E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 Pfam PF00005 ABC transporter 22 161 1.2E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 SMART SM00382 31 217 1.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00900 db0136f82614cb519d7124545be97a5c 304 PANTHER PTHR24220 8 226 3.2E-90 T 22-04-2016 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 Gene3D G3DSA:3.30.43.10 1 53 2.8E-22 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 173 4.9E-54 T 22-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 SUPERFAMILY SSF56176 1 173 7.01E-58 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 Gene3D G3DSA:3.30.465.10 58 173 3.9E-37 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 Gene3D G3DSA:3.30.390.50 178 287 2.1E-29 T 22-04-2016 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 SMART SM01092 180 282 9.5E-29 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 PANTHER PTHR11908:SF68 1 287 3.2E-101 T 22-04-2016 TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 SUPERFAMILY SSF55447 179 284 1.7E-26 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 281 2.4E-23 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal TRD_RS05635 9420b76938ed394555626b73f2c9b537 288 PANTHER PTHR11908 1 287 3.2E-101 T 22-04-2016 TRD_RS00380 8a99c202f869ef83955bb79ebbc549ad 318 Pfam PF03741 Integral membrane protein TerC family 70 274 5.0E-56 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 TRD_RS00380 8a99c202f869ef83955bb79ebbc549ad 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 5 303 3.8E-130 T 22-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 TRD_RS00380 8a99c202f869ef83955bb79ebbc549ad 318 PANTHER PTHR30238:SF0 3 316 6.2E-160 T 22-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 TRD_RS00380 8a99c202f869ef83955bb79ebbc549ad 318 PANTHER PTHR30238 3 316 6.2E-160 T 22-04-2016 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 PANTHER PTHR11918 6 453 1.7E-155 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 Pfam PF00919 Uncharacterized protein family UPF0004 6 89 5.0E-23 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 Gene3D G3DSA:2.40.50.140 376 449 7.5E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 441 6.1E-112 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 SMART SM00729 142 361 2.7E-51 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 PANTHER PTHR11918:SF57 6 453 1.7E-155 T 22-04-2016 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 Gene3D G3DSA:3.80.30.20 141 373 1.4E-67 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 5 443 56.046 T 22-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 146 166 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 SUPERFAMILY SSF102114 135 368 2.09E-52 T 22-04-2016 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 Pfam PF01938 TRAM domain 373 444 2.0E-5 T 22-04-2016 IPR002792 TRAM domain TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 Pfam PF04055 Radical SAM superfamily 147 319 4.3E-26 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 TRD_RS05800 33928edc84948c951ab06a5c5cb7fdbf 470 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 440 3.6E-127 T 22-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 TRD_RS05430 f1653f17021c193764d867570fd28551 979 Pfam PF02913 FAD linked oxidases, C-terminal domain 280 529 8.9E-50 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 TRD_RS05430 f1653f17021c193764d867570fd28551 979 SUPERFAMILY SSF55103 285 533 1.54E-53 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 TRD_RS05430 f1653f17021c193764d867570fd28551 979 Pfam PF01565 FAD binding domain 56 193 5.7E-41 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 TRD_RS05430 f1653f17021c193764d867570fd28551 979 PANTHER PTHR11748:SF35 14 197 1.6E-127 T 22-04-2016 TRD_RS05430 f1653f17021c193764d867570fd28551 979 PANTHER PTHR11748 14 197 1.6E-127 T 22-04-2016 TRD_RS05430 f1653f17021c193764d867570fd28551 979 Pfam PF02754 Cysteine-rich domain 745 822 1.8E-8 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS05430 f1653f17021c193764d867570fd28551 979 Pfam PF02754 Cysteine-rich domain 886 954 0.11 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS05430 f1653f17021c193764d867570fd28551 979 Gene3D G3DSA:1.10.1060.10 510 658 1.3E-12 T 22-04-2016 TRD_RS05430 f1653f17021c193764d867570fd28551 979 SUPERFAMILY SSF46548 546 648 1.41E-9 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS05430 f1653f17021c193764d867570fd28551 979 PANTHER PTHR11748:SF35 235 578 1.6E-127 T 22-04-2016 TRD_RS05430 f1653f17021c193764d867570fd28551 979 PANTHER PTHR11748 235 578 1.6E-127 T 22-04-2016 TRD_RS05430 f1653f17021c193764d867570fd28551 979 SUPERFAMILY SSF56176 24 280 6.54E-51 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS05430 f1653f17021c193764d867570fd28551 979 Gene3D G3DSA:3.30.43.10 16 109 9.5E-22 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 TRD_RS05430 f1653f17021c193764d867570fd28551 979 Pfam PF13534 4Fe-4S dicluster domain 569 645 1.7E-8 T 22-04-2016 TRD_RS05430 f1653f17021c193764d867570fd28551 979 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 630 641 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS05430 f1653f17021c193764d867570fd28551 979 Gene3D G3DSA:3.30.465.10 111 280 8.2E-30 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 3.7E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 3.7E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 3.7E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 SUPERFAMILY SSF51735 11 259 7.83E-73 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PANTHER PTHR24322 16 150 4.4E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PANTHER PTHR24322 167 199 4.4E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 256 2.6E-56 T 22-04-2016 TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.6E-32 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.6E-32 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.6E-32 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 1.6E-32 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.6E-32 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.6E-32 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01400 82573249aebbaa94585d4f9e812ac488 273 Gene3D G3DSA:3.40.50.720 4 259 1.2E-76 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 SUPERFAMILY SSF51905 439 472 2.41E-26 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 SUPERFAMILY SSF51905 5 309 2.41E-26 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 62 1.8E-9 T 22-04-2016 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 PANTHER PTHR10668 6 477 2.4E-127 T 22-04-2016 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 PANTHER PTHR10668:SF74 6 477 2.4E-127 T 22-04-2016 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 Gene3D G3DSA:3.50.50.60 5 56 1.6E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 Gene3D G3DSA:3.50.50.60 417 466 1.6E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02310 2d57644148e0381f94cbe852927aef9a 477 Gene3D G3DSA:3.50.50.60 215 311 1.6E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Pfam PF00923 Transaldolase 15 368 1.0E-81 T 22-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Gene3D G3DSA:3.20.20.70 1 369 2.3E-109 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 SUPERFAMILY SSF53697 393 777 2.05E-72 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 ProSitePatterns PS00958 Transaldolase active site. 137 154 - T 22-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 SUPERFAMILY SSF51569 1 372 5.86E-70 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Gene3D G3DSA:3.40.50.10490 729 777 4.1E-7 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 ProSitePatterns PS01054 Transaldolase signature 1. 41 49 - T 22-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 TIGRFAM TIGR00876 tal_mycobact: transaldolase 13 367 1.8E-103 T 22-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 PRINTS PR00662 Glucose-6-phosphate isomerase signature 463 482 6.4E-6 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 PRINTS PR00662 Glucose-6-phosphate isomerase signature 574 592 6.4E-6 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 PRINTS PR00662 Glucose-6-phosphate isomerase signature 647 668 6.4E-6 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Gene3D G3DSA:3.40.50.10490 456 583 4.6E-35 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Pfam PF00342 Phosphoglucose isomerase 438 670 3.2E-15 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 PANTHER PTHR10683:SF12 1 395 3.1E-122 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Hamap MF_00493 Transaldolase [tal]. 1 379 135.376 T 22-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Gene3D G3DSA:3.40.50.10490 584 677 8.1E-25 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 Gene3D G3DSA:3.40.50.10490 847 927 2.4E-9 T 22-04-2016 TRD_RS05305 f4f4177c12c10bc3ac78a1aa7ed87994 941 PANTHER PTHR10683 1 395 3.1E-122 T 22-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 TRD_RS09415 83f71b97b468d0d686ec20cc42ec9c79 267 Gene3D G3DSA:3.20.20.70 210 267 2.0E-9 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS09415 83f71b97b468d0d686ec20cc42ec9c79 267 PANTHER PTHR31829 188 267 6.8E-50 T 22-04-2016 TRD_RS09415 83f71b97b468d0d686ec20cc42ec9c79 267 Pfam PF01680 SOR/SNZ family 193 267 1.9E-34 T 22-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS09415 83f71b97b468d0d686ec20cc42ec9c79 267 SUPERFAMILY SSF110399 195 267 2.22E-15 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 TRD_RS02820 b9492e040d4ea27d87b62f07ef105523 150 SUPERFAMILY SSF49879 41 147 4.78E-27 T 22-04-2016 IPR008984 SMAD/FHA domain GO:0005515 TRD_RS02820 b9492e040d4ea27d87b62f07ef105523 150 SMART SM00240 77 127 5.8E-16 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS02820 b9492e040d4ea27d87b62f07ef105523 150 Pfam PF00498 FHA domain 79 142 2.1E-20 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS02820 b9492e040d4ea27d87b62f07ef105523 150 PANTHER PTHR15715 71 144 7.4E-19 T 22-04-2016 TRD_RS02820 b9492e040d4ea27d87b62f07ef105523 150 Gene3D G3DSA:2.60.200.20 52 147 1.8E-27 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 PANTHER PTHR10584 1 288 9.4E-60 T 22-04-2016 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 SUPERFAMILY SSF53613 8 285 2.34E-60 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 24 48 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 PANTHER PTHR10584:SF166 1 288 9.4E-60 T 22-04-2016 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 PRINTS PR00990 Ribokinase signature 160 175 2.2E-17 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 PRINTS PR00990 Ribokinase signature 90 103 2.2E-17 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 PRINTS PR00990 Ribokinase signature 201 212 2.2E-17 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 PRINTS PR00990 Ribokinase signature 19 38 2.2E-17 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 Pfam PF00294 pfkB family carbohydrate kinase 10 278 1.1E-51 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 230 243 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS03230 a65ac84e7054e5a6aa6f6fb47e22e72f 296 Gene3D G3DSA:3.40.1190.20 1 288 1.6E-71 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 9 93 3.4E-5 T 22-04-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 PANTHER PTHR34108:SF1 11 235 3.8E-45 T 22-04-2016 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 129 228 3.4E-29 T 22-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 13 229 3.8E-32 T 22-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 Gene3D G3DSA:2.160.20.70 116 231 9.4E-36 T 22-04-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 SUPERFAMILY SSF63848 127 231 1.57E-30 T 22-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 PANTHER PTHR34108 11 235 3.8E-45 T 22-04-2016 TRD_RS08995 f18804215a48e9a2b1cbe1d3c3395935 235 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 10 231 20.45 T 22-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 287 1.7E-69 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 319 1.7E-34 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 SUPERFAMILY SSF51735 100 288 6.37E-67 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 PANTHER PTHR10996 2 323 2.1E-145 T 22-04-2016 TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 SUPERFAMILY SSF52283 2 137 1.7E-36 T 22-04-2016 TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 Gene3D G3DSA:3.40.50.720 2 113 6.8E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03645 ad5a9d3ffe19ced70af9b99127dbf19c 328 Gene3D G3DSA:3.40.50.720 114 286 2.7E-74 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06795 44330e05c7ecf6a0853e4c4f73b13b14 418 SUPERFAMILY SSF103473 12 401 3.66E-48 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS06795 44330e05c7ecf6a0853e4c4f73b13b14 418 Gene3D G3DSA:1.20.1250.20 219 401 1.5E-12 T 22-04-2016 TRD_RS06795 44330e05c7ecf6a0853e4c4f73b13b14 418 Gene3D G3DSA:1.20.1250.20 16 201 5.6E-28 T 22-04-2016 TRD_RS06795 44330e05c7ecf6a0853e4c4f73b13b14 418 Pfam PF07690 Major Facilitator Superfamily 21 311 1.5E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS06795 44330e05c7ecf6a0853e4c4f73b13b14 418 PANTHER PTHR23517 1 418 1.5E-43 T 22-04-2016 TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 34 58 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 Gene3D G3DSA:3.40.1190.20 3 315 1.2E-103 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 SUPERFAMILY SSF53613 2 313 3.9E-91 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 PANTHER PTHR10584 4 314 1.8E-131 T 22-04-2016 TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 251 264 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 PANTHER PTHR10584:SF181 4 314 1.8E-131 T 22-04-2016 TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 Pfam PF00294 pfkB family carbohydrate kinase 3 305 1.1E-74 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 PRINTS PR00990 Ribokinase signature 222 233 3.6E-6 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS00335 82aa8d226860f45977b43e04160233a1 320 PRINTS PR00990 Ribokinase signature 29 48 3.6E-6 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS06070 8edc09ac6b5b0b7267eb0ae0639b0376 285 Pfam PF08241 Methyltransferase domain 82 173 1.6E-24 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 TRD_RS06070 8edc09ac6b5b0b7267eb0ae0639b0376 285 PANTHER PTHR10108 32 250 1.9E-31 T 22-04-2016 TRD_RS06070 8edc09ac6b5b0b7267eb0ae0639b0376 285 Gene3D G3DSA:3.40.50.150 43 220 4.3E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS06070 8edc09ac6b5b0b7267eb0ae0639b0376 285 SUPERFAMILY SSF53335 44 226 2.56E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS07470 eaade5d156738e7f122508128df8d1ef 822 SUPERFAMILY SSF49373 599 667 3.37E-7 T 22-04-2016 IPR008964 Invasin/intimin cell-adhesion fragments TRD_RS07470 eaade5d156738e7f122508128df8d1ef 822 SMART SM00634 588 677 9.3E-5 T 22-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain TRD_RS07470 eaade5d156738e7f122508128df8d1ef 822 Gene3D G3DSA:2.60.40.920 592 667 8.5E-8 T 22-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain TRD_RS07470 eaade5d156738e7f122508128df8d1ef 822 Pfam PF02369 Bacterial Ig-like domain (group 1) 597 676 5.4E-8 T 22-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 Gene3D G3DSA:3.40.640.10 71 343 1.3E-89 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 PANTHER PTHR11986 1 450 4.3E-172 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 PIRSF PIRSF000521 35 449 7.3E-38 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 Gene3D G3DSA:3.90.1150.10 9 69 1.2E-41 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 Gene3D G3DSA:3.90.1150.10 346 449 1.2E-41 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 PANTHER PTHR11986:SF82 1 450 4.3E-172 T 22-04-2016 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 SUPERFAMILY SSF53383 14 448 3.7E-134 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS05000 d55db125b8c8db563d4e9a74b1c4ec70 451 Pfam PF00202 Aminotransferase class-III 34 446 9.0E-110 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 SUPERFAMILY SSF56281 6 427 1.27E-89 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 PANTHER PTHR11203 1 552 8.2E-184 T 22-04-2016 TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Hamap MF_01491 Ribonuclease J [rnj]. 1 553 38.636 T 22-04-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Pfam PF00753 Metallo-beta-lactamase superfamily 18 222 3.8E-12 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 368 396 - T 22-04-2016 IPR001587 Ribonuclease J, conserved site TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 PANTHER PTHR11203:SF22 1 552 8.2E-184 T 22-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Gene3D G3DSA:3.60.15.10 3 258 5.4E-74 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 7 550 2.2E-160 T 22-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 PIRSF PIRSF004803 1 553 4.0E-195 T 22-04-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 SMART SM00849 18 218 1.9E-20 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS08385 9cb6a9c9a8b9a9902bc73f9ca74da8f3 553 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 366 419 2.9E-10 T 22-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 Pfam PF00850 Histone deacetylase domain 37 321 8.0E-83 T 22-04-2016 IPR023801 Histone deacetylase domain TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 SUPERFAMILY SSF52768 1 342 3.26E-111 T 22-04-2016 TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 PRINTS PR01270 Histone deacetylase superfamily signature 135 158 8.1E-16 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 PRINTS PR01270 Histone deacetylase superfamily signature 253 263 8.1E-16 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 PRINTS PR01270 Histone deacetylase superfamily signature 168 183 8.1E-16 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 PANTHER PTHR10625 1 366 4.0E-125 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS07240 7e22720c586b4fd236f90f00c2c63c7e 368 Gene3D G3DSA:3.40.800.20 2 367 4.0E-110 T 22-04-2016 IPR023801 Histone deacetylase domain TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 Gene3D G3DSA:3.40.630.30 132 318 3.4E-68 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 SUPERFAMILY SSF55729 12 147 4.98E-17 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 SUPERFAMILY SSF55729 152 333 3.84E-39 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 PANTHER PTHR36174 1 334 1.3E-53 T 22-04-2016 TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 Pfam PF02388 FemAB family 225 328 1.1E-17 T 22-04-2016 IPR003447 FemABX peptidyl transferase GO:0009252|GO:0016755 TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 Pfam PF02388 FemAB family 25 112 3.1E-8 T 22-04-2016 IPR003447 FemABX peptidyl transferase GO:0009252|GO:0016755 TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 Pfam PF02388 FemAB family 132 219 2.2E-17 T 22-04-2016 IPR003447 FemABX peptidyl transferase GO:0009252|GO:0016755 TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 PANTHER PTHR36174:SF1 1 334 1.3E-53 T 22-04-2016 TRD_RS04270 a55e46fd6eb34608d39eee7ee8027005 340 Gene3D G3DSA:3.40.630.30 14 131 1.4E-15 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 Gene3D G3DSA:3.30.70.100 177 266 5.5E-7 T 22-04-2016 TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 SUPERFAMILY SSF82861 19 109 1.7E-13 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 PANTHER PTHR30460 1 280 1.2E-81 T 22-04-2016 TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 SUPERFAMILY SSF50182 111 173 1.37E-14 T 22-04-2016 IPR010920 LSM domain TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 SUPERFAMILY SSF82689 174 277 9.55E-16 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 Pfam PF00924 Mechanosensitive ion channel 69 267 1.0E-44 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 TRD_RS09265 6695029aa8ed2749ff2a94267d89b0cb 288 Gene3D G3DSA:2.30.30.60 126 167 5.1E-14 T 22-04-2016 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 Hamap MF_00580 10 kDa chaperonin [groS]. 7 100 28.014 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 PANTHER PTHR10772 5 99 3.7E-47 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 ProSitePatterns PS00681 Chaperonins cpn10 signature. 8 32 - T 22-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 SUPERFAMILY SSF50129 6 100 4.8E-37 T 22-04-2016 IPR011032 GroES-like TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 Pfam PF00166 Chaperonin 10 Kd subunit 7 98 2.4E-38 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 30 51 8.6E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 86 99 8.6E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 65 77 8.6E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 PRINTS PR00297 10kDa chaperonin signature 8 23 8.6E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 SMART SM00883 7 99 1.4E-58 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS06100 014c50f9968f163a861b7cdcbe5c6547 101 Gene3D G3DSA:2.30.33.40 7 99 5.1E-41 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 Pfam PF07690 Major Facilitator Superfamily 32 371 7.6E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 PANTHER PTHR23502 26 412 1.7E-78 T 22-04-2016 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 Gene3D G3DSA:1.20.1250.20 230 408 3.5E-12 T 22-04-2016 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 Gene3D G3DSA:1.20.1250.20 24 209 4.7E-26 T 22-04-2016 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 PANTHER PTHR23502:SF19 26 412 1.7E-78 T 22-04-2016 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 28 397 2.3E-60 T 22-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 TRD_RS07185 63d2e0671378b5f38cb953bbae4fe342 417 SUPERFAMILY SSF103473 22 413 5.1E-58 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS07315 08455cff901fba0ffeccc5678e038dd6 592 Pfam PF04389 Peptidase family M28 232 427 1.3E-14 T 22-04-2016 IPR007484 Peptidase M28 TRD_RS07315 08455cff901fba0ffeccc5678e038dd6 592 Gene3D G3DSA:3.50.30.30 87 217 9.4E-4 T 22-04-2016 TRD_RS07315 08455cff901fba0ffeccc5678e038dd6 592 SUPERFAMILY SSF53187 215 444 2.7E-39 T 22-04-2016 TRD_RS07315 08455cff901fba0ffeccc5678e038dd6 592 SUPERFAMILY SSF53187 15 61 2.7E-39 T 22-04-2016 TRD_RS07315 08455cff901fba0ffeccc5678e038dd6 592 Gene3D G3DSA:3.40.630.10 14 72 6.4E-42 T 22-04-2016 TRD_RS07315 08455cff901fba0ffeccc5678e038dd6 592 Gene3D G3DSA:3.40.630.10 230 448 6.4E-42 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 121 277 3.6E-34 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF52156 401 526 9.68E-34 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF52540 116 290 1.14E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:2.40.30.10 289 383 8.2E-23 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PANTHER PTHR23115 100 444 2.1E-196 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PANTHER PTHR23115 472 615 2.1E-196 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PANTHER PTHR23115:SF184 100 444 2.1E-196 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PANTHER PTHR23115:SF184 472 615 2.1E-196 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:3.40.50.300 119 278 1.4E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:3.40.50.10050 418 498 2.4E-24 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 35 617 2.1E-232 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PRINTS PR00449 Transforming protein P21 ras signature 160 182 7.4E-5 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PRINTS PR00449 Transforming protein P21 ras signature 218 231 7.4E-5 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 PRINTS PR00449 Transforming protein P21 ras signature 259 281 7.4E-5 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Pfam PF11987 Translation-initiation factor 2 411 508 6.5E-35 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF50447 290 374 4.64E-25 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Pfam PF00009 Elongation factor Tu GTP binding domain 123 279 3.8E-37 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 ProSitePatterns PS01176 Initiation factor 2 signature. 570 592 - T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 39 88 9.0E-13 T 22-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 SUPERFAMILY SSF50447 522 617 2.83E-27 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Gene3D G3DSA:2.40.30.10 521 617 3.4E-32 T 22-04-2016 TRD_RS03540 0c82a84e8572a8902c6687a89ac20f99 619 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 2 617 16.194 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 386 407 3.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 276 336 3.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 4 88 3.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.40.50.300 417 578 1.2E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Pfam PF00271 Helicase conserved C-terminal domain 430 542 2.1E-18 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF46600 622 665 8.76E-13 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Pfam PF04851 Type III restriction enzyme, res subunit 11 137 5.1E-12 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF52540 3 412 1.05E-136 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 661 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:3.30.2060.10 159 229 1.1E-10 T 22-04-2016 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Pfam PF12344 Ultra-violet resistance protein B 549 591 1.6E-22 T 22-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Pfam PF02151 UvrB/uvrC motif 629 662 8.7E-10 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 SMART SM00490 457 543 3.3E-20 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF52540 456 575 1.22E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Gene3D G3DSA:4.10.860.10 621 665 9.2E-15 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 SUPERFAMILY SSF52540 35 81 1.22E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 SMART SM00487 8 423 1.9E-29 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 PANTHER PTHR24029 1 668 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 TRD_RS07250 ccf4086008c55a31f070f39e116a100a 668 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 663 44.163 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 Gene3D G3DSA:3.40.640.10 96 312 1.6E-80 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 PANTHER PTHR11751 43 429 1.9E-117 T 22-04-2016 TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 Gene3D G3DSA:1.10.10.10 2 29 6.5E-4 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 Pfam PF00155 Aminotransferase class I and II 68 410 4.2E-34 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 SUPERFAMILY SSF53383 55 431 6.39E-107 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 Gene3D G3DSA:3.90.1150.10 313 433 1.6E-11 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS00130 e4e485df3381d5595da4174cdc7ac364 447 PANTHER PTHR11751:SF294 43 429 1.9E-117 T 22-04-2016 TRD_RS02730 976bae4341c82292165d943c8459a3ad 354 Pfam PF09084 NMT1/THI5 like 65 275 1.4E-68 T 22-04-2016 IPR015168 SsuA/THI5-like TRD_RS02730 976bae4341c82292165d943c8459a3ad 354 PANTHER PTHR31528 53 354 2.2E-82 T 22-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 TRD_RS02730 976bae4341c82292165d943c8459a3ad 354 SUPERFAMILY SSF53850 59 340 8.36E-42 T 22-04-2016 TRD_RS02730 976bae4341c82292165d943c8459a3ad 354 Gene3D G3DSA:3.40.190.10 141 263 3.6E-12 T 22-04-2016 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Gene3D G3DSA:3.40.50.300 4 175 9.0E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Gene3D G3DSA:3.40.50.300 182 368 2.8E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 363 443 7.4E-36 T 22-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like TRD_RS03445 86f01208f47c1106af338e289555c81d 460 PANTHER PTHR11649 3 448 8.4E-141 T 22-04-2016 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 443 2.8E-167 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 SUPERFAMILY SSF52540 4 172 7.2E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Gene3D G3DSA:3.30.300.20 369 445 8.2E-37 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta TRD_RS03445 86f01208f47c1106af338e289555c81d 460 PANTHER PTHR11649:SF60 3 448 8.4E-141 T 22-04-2016 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 SUPERFAMILY SSF52540 145 447 3.05E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03445 86f01208f47c1106af338e289555c81d 460 SMART SM00382 182 325 0.65 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS03445 86f01208f47c1106af338e289555c81d 460 SMART SM00382 2 145 0.89 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS03445 86f01208f47c1106af338e289555c81d 460 PIRSF PIRSF006485 2 450 1.2E-167 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Pfam PF01926 50S ribosome-binding GTPase 5 127 3.8E-29 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Pfam PF01926 50S ribosome-binding GTPase 185 303 4.4E-26 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 Hamap MF_00195 GTPase Der [der]. 3 446 40.246 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 186 206 1.7E-5 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 235 250 1.7E-5 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 166 4.4E-26 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS03445 86f01208f47c1106af338e289555c81d 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 184 352 7.6E-28 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 SUPERFAMILY SSF48239 144 304 3.53E-26 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 SUPERFAMILY SSF48239 28 57 3.53E-26 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 Gene3D G3DSA:1.50.10.20 146 274 3.0E-21 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 PANTHER PTHR33393:SF4 438 477 7.2E-13 T 22-04-2016 TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 Gene3D G3DSA:1.50.10.20 30 80 1.8E-6 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 35 71 0.0082 T 22-04-2016 IPR001330 PFTB repeat GO:0003824 TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 213 232 8.3 T 22-04-2016 IPR001330 PFTB repeat GO:0003824 TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 164 181 3.5 T 22-04-2016 IPR001330 PFTB repeat GO:0003824 TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 SUPERFAMILY SSF48239 31 161 3.81E-9 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid TRD_RS13415 0b98260c7bd50e5162f9181269d9d8a6 501 PANTHER PTHR33393 438 477 7.2E-13 T 22-04-2016 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 Gene3D G3DSA:3.40.50.10490 215 391 2.7E-38 T 22-04-2016 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 Gene3D G3DSA:3.40.50.10490 26 167 5.0E-16 T 22-04-2016 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 Pfam PF13580 SIS domain 213 346 1.2E-18 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 PANTHER PTHR30390:SF6 204 391 7.8E-40 T 22-04-2016 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 SUPERFAMILY SSF53697 26 168 8.4E-16 T 22-04-2016 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 PANTHER PTHR30390 204 391 7.8E-40 T 22-04-2016 TRD_RS08715 8c45444339ac230e53d8e88bc91897d2 395 SUPERFAMILY SSF53697 218 391 1.5E-33 T 22-04-2016 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 Pfam PF02629 CoA binding domain 193 286 5.3E-6 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 PANTHER PTHR11117:SF10 31 513 6.6E-99 T 22-04-2016 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 Gene3D G3DSA:3.40.50.261 169 303 6.4E-19 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 Gene3D G3DSA:3.40.50.720 105 168 5.3E-4 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 SUPERFAMILY SSF52210 183 314 1.03E-17 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 PANTHER PTHR11117 31 513 6.6E-99 T 22-04-2016 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 SUPERFAMILY SSF52210 353 512 2.09E-8 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS02650 18e12f96f792c0db2f3647fa1472af93 514 Pfam PF00549 CoA-ligase 350 510 6.7E-47 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55073 1770 1926 7.85E-45 T 22-04-2016 IPR029787 Nucleotide cyclase TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 241 371 2.6E-31 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 812 919 6.2E-26 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1056 1184 5.6E-27 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1037 1175 2.42E-22 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1496 1581 2.0E-22 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 402 487 2.2E-16 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 265 349 1.1E-22 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1359 1445 1.9E-25 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1222 1302 2.8E-21 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 1085 1166 9.3E-19 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 947 1028 6.4E-17 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 676 759 2.2E-17 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 539 623 4.8E-19 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF08447 PAS fold 811 890 5.9E-19 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 589 631 1.4E-7 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 998 1040 0.0095 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1547 1589 3.6E-9 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1135 1177 1.5E-8 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 315 356 3.6E-6 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1272 1314 2.0E-7 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 1409 1451 1.0E-12 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 452 494 5.1E-6 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 726 768 7.3E-10 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00086 861 903 5.4E-6 T 22-04-2016 IPR001610 PAC motif TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00267 1754 1927 1.0E-59 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 245 359 3.22E-24 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 900 1038 1.18E-21 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1453 1586 6.0E-29 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 920 1038 1.4E-24 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 634 766 5.3E-25 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 497 629 6.3E-27 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1323 1449 8.0E-32 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 372 492 1.2E-24 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 639 774 4.9E-15 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1049 1184 1.5E-12 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 503 637 3.6E-15 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 238 362 2.0E-16 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1459 1594 2.5E-15 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 914 1047 4.5E-9 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1322 1458 1.4E-19 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 365 501 3.0E-12 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 812 910 6.1E-13 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1186 1321 9.2E-18 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1448 1587 8.9E-27 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 1761 1924 4.6E-42 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 660 770 1.39E-22 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1311 1449 3.32E-28 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 353 492 8.55E-22 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 491 629 2.9E-23 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 765 901 9.34E-23 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55781 1612 1765 3.71E-27 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF13185 GAF domain 1610 1753 3.1E-16 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.40 1587 1765 4.5E-27 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 PANTHER PTHR24423 221 351 1.3E-38 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 PANTHER PTHR24423 1310 1468 1.3E-38 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 PANTHER PTHR24423 1914 1919 1.3E-38 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Pfam PF00990 Diguanylate cyclase, GGDEF domain 1765 1921 7.7E-45 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 1185 1322 7.9E-29 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.70.270 1766 1927 9.9E-55 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00065 1611 1762 1.1E-14 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 651 720 0.0013 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 780 855 0.14 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1052 1129 1.9E-5 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 239 309 6.8E-6 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 506 583 2.4E-6 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 915 992 4.7E-4 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1326 1404 9.8 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 368 446 47.0 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1189 1266 3.4E-4 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SMART SM00091 1463 1541 0.038 T 22-04-2016 IPR000014 PAS domain TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 Gene3D G3DSA:3.30.450.20 117 240 4.8E-5 T 22-04-2016 TRD_RS13390 1dbc079242ea77976f9202dbc449af6f 1941 SUPERFAMILY SSF55785 1174 1312 1.11E-25 T 22-04-2016 IPR000014 PAS domain TRD_RS03470 5175de6c60d1d0eca53638cb1f4a6642 556 PANTHER PTHR10566:SF10 10 545 1.8E-154 T 22-04-2016 TRD_RS03470 5175de6c60d1d0eca53638cb1f4a6642 556 Pfam PF03109 ABC1 family 116 233 5.7E-33 T 22-04-2016 IPR004147 UbiB domain TRD_RS03470 5175de6c60d1d0eca53638cb1f4a6642 556 Gene3D G3DSA:3.90.1200.10 261 317 4.7E-6 T 22-04-2016 TRD_RS03470 5175de6c60d1d0eca53638cb1f4a6642 556 PANTHER PTHR10566 10 545 1.8E-154 T 22-04-2016 TRD_RS03470 5175de6c60d1d0eca53638cb1f4a6642 556 SUPERFAMILY SSF56112 99 161 5.0E-28 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS03470 5175de6c60d1d0eca53638cb1f4a6642 556 SUPERFAMILY SSF56112 196 430 5.0E-28 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 PANTHER PTHR11904 4 289 3.9E-130 T 22-04-2016 IPR001369 PNP/MTAP phosphorylase TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 3 265 43.647 T 22-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 5 244 1.7E-96 T 22-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 Gene3D G3DSA:3.40.50.1580 3 263 9.9E-92 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 Pfam PF01048 Phosphorylase superfamily 5 244 1.4E-47 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 SUPERFAMILY SSF53167 3 265 4.31E-89 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 TRD_RS03840 816d37badefa7d051101d654bd3b6be8 289 PANTHER PTHR11904:SF1 4 289 3.9E-130 T 22-04-2016 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 1.1E-21 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 Gene3D G3DSA:1.20.58.110 1 87 4.1E-30 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 Pfam PF01649 Ribosomal protein S20 2 84 9.9E-28 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 PANTHER PTHR33398 2 90 2.1E-28 T 22-04-2016 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 SUPERFAMILY SSF46992 3 87 2.75E-28 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 32 84 2.0E-8 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03895 3bde186dc8c6879eadb06fec55f8cf20 99 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.95 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 PANTHER PTHR30307:SF0 8 353 2.2E-163 T 22-04-2016 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 Gene3D G3DSA:3.40.1780.10 188 353 7.0E-98 T 22-04-2016 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 Gene3D G3DSA:3.40.1780.10 8 68 7.0E-98 T 22-04-2016 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 8 353 4.8E-121 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 PANTHER PTHR30307 8 353 2.2E-163 T 22-04-2016 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 SUPERFAMILY SSF111337 8 353 4.84E-131 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 7 353 46.467 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 Gene3D G3DSA:2.40.10.240 70 146 9.5E-17 T 22-04-2016 TRD_RS03295 6731717140db490b8a94b9db36f69996 353 Pfam PF02547 Queuosine biosynthesis protein 10 352 2.8E-135 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 PRINTS PR00061 Ribosomal protein L19 signature 89 114 4.8E-42 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 PRINTS PR00061 Ribosomal protein L19 signature 34 63 4.8E-42 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 PRINTS PR00061 Ribosomal protein L19 signature 4 33 4.8E-42 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 SUPERFAMILY SSF50104 1 117 3.31E-46 T 22-04-2016 IPR008991 Translation protein SH3-like domain TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 115 32.032 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 Pfam PF01245 Ribosomal protein L19 4 114 2.2E-48 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 PANTHER PTHR15680 1 116 2.6E-50 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 ProSitePatterns PS01015 Ribosomal protein L19 signature. 87 102 - T 22-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 114 6.5E-48 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04835 ce2a8c72d6909f36d96e5f63977efa9c 123 PIRSF PIRSF002191 1 121 2.2E-49 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 Pfam PF06733 DEAD_2 133 281 6.7E-6 T 22-04-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 PANTHER PTHR11472:SF37 39 289 8.2E-68 T 22-04-2016 TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 SUPERFAMILY SSF52540 224 275 7.79E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 SUPERFAMILY SSF52540 35 146 7.79E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 Gene3D G3DSA:3.40.50.300 50 154 5.7E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 Gene3D G3DSA:3.40.50.300 229 288 5.7E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 Pfam PF00270 DEAD/DEAH box helicase 51 105 3.4E-5 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 PANTHER PTHR11472 39 289 8.2E-68 T 22-04-2016 TRD_RS10785 626da85fb0e095f0995627b13bcd8267 445 SMART SM00487 38 341 0.0023 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS02070 d5ee3232a4619a7de69eb9e2ab94057d 340 Gene3D G3DSA:3.20.20.70 75 335 4.0E-97 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS02070 d5ee3232a4619a7de69eb9e2ab94057d 340 PANTHER PTHR21057 2 340 9.2E-149 T 22-04-2016 TRD_RS02070 d5ee3232a4619a7de69eb9e2ab94057d 340 PANTHER PTHR21057:SF1 2 340 9.2E-149 T 22-04-2016 TRD_RS02070 d5ee3232a4619a7de69eb9e2ab94057d 340 Pfam PF00793 DAHP synthetase I family 89 324 8.2E-72 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 TRD_RS02070 d5ee3232a4619a7de69eb9e2ab94057d 340 SUPERFAMILY SSF51569 1 335 8.33E-105 T 22-04-2016 TRD_RS02070 d5ee3232a4619a7de69eb9e2ab94057d 340 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 73 329 1.4E-116 T 22-04-2016 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 SUPERFAMILY SSF52467 160 347 2.55E-42 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 321 4.5E-33 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 Gene3D G3DSA:3.40.50.970 4 180 5.1E-54 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 PANTHER PTHR18968 4 539 1.4E-153 T 22-04-2016 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 PANTHER PTHR18968:SF116 4 539 1.4E-153 T 22-04-2016 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 523 2.7E-37 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 Gene3D G3DSA:3.40.50.1220 187 371 1.6E-48 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 SUPERFAMILY SSF52518 3 186 5.4E-48 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 413 432 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 SUPERFAMILY SSF52518 357 533 9.24E-54 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 175 8.4E-49 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 TRD_RS02585 1b24fc9276aa64c7f0890d75eca7f8ad 541 Gene3D G3DSA:3.40.50.970 372 528 1.1E-56 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 Pfam PF00005 ABC transporter 405 553 2.9E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 ProSitePatterns PS00211 ABC transporters family signature. 525 539 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 Gene3D G3DSA:3.40.50.300 399 617 4.9E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 SUPERFAMILY SSF52540 397 624 1.43E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 Gene3D G3DSA:1.20.1560.10 30 349 2.8E-69 T 22-04-2016 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 Pfam PF00664 ABC transporter transmembrane region 44 320 1.4E-40 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 SUPERFAMILY SSF90123 30 349 1.83E-69 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 PANTHER PTHR24221 399 624 9.0E-209 T 22-04-2016 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 PANTHER PTHR24221 17 376 9.0E-209 T 22-04-2016 TRD_RS07225 3efb6ed29d58ce6015b7a0238a2831d1 630 SMART SM00382 413 599 3.0E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08415 99c84115ae941a4df7e3bd98c13a1598 215 PANTHER PTHR22789 9 215 1.6E-50 T 22-04-2016 TRD_RS08415 99c84115ae941a4df7e3bd98c13a1598 215 Gene3D G3DSA:3.40.225.10 9 213 5.4E-54 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS08415 99c84115ae941a4df7e3bd98c13a1598 215 SMART SM01007 9 185 5.8E-50 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS08415 99c84115ae941a4df7e3bd98c13a1598 215 SUPERFAMILY SSF53639 8 212 4.12E-55 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS08415 99c84115ae941a4df7e3bd98c13a1598 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 184 1.1E-41 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS08415 99c84115ae941a4df7e3bd98c13a1598 215 PANTHER PTHR22789:SF0 9 215 1.6E-50 T 22-04-2016 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 211 227 - T 22-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 79 93 - T 22-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 SMART SM00997 189 350 2.6E-110 T 22-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 SMART SM00996 7 421 2.5E-146 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Gene3D G3DSA:3.40.50.720 191 349 6.3E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Gene3D G3DSA:3.40.50.1480 351 421 1.9E-90 T 22-04-2016 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Gene3D G3DSA:3.40.50.1480 8 190 1.9E-90 T 22-04-2016 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 8 422 2.5E-194 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 SUPERFAMILY SSF52283 351 422 2.1E-95 T 22-04-2016 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 SUPERFAMILY SSF52283 6 188 2.1E-95 T 22-04-2016 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 PANTHER PTHR23420 7 421 3.9E-257 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 3 422 49.199 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 189 349 2.5E-56 T 22-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 143 416 8.4E-28 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 8 140 8.7E-33 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS04220 b49a1a71203655c01877c8884483836a 422 SUPERFAMILY SSF51735 189 351 1.46E-69 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04220 b49a1a71203655c01877c8884483836a 422 PIRSF PIRSF001109 2 422 3.4E-186 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Gene3D G3DSA:3.90.700.10 239 344 1.6E-39 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 PANTHER PTHR11632:SF5 3 575 0.0 T 22-04-2016 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 3 575 2.1E-266 T 22-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Gene3D G3DSA:1.20.58.100 421 530 2.6E-39 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 SUPERFAMILY SSF46977 441 575 1.31E-54 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 PIRSF PIRSF000171 1 569 3.7E-53 T 22-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Pfam PF02910 Fumarate reductase flavoprotein C-term 450 575 3.9E-43 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 SUPERFAMILY SSF51905 3 255 9.82E-79 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 SUPERFAMILY SSF51905 353 431 9.82E-79 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Gene3D G3DSA:4.10.80.40 531 572 6.3E-16 T 22-04-2016 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Pfam PF00890 FAD binding domain 6 396 4.2E-118 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 PANTHER PTHR11632 3 575 0.0 T 22-04-2016 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 SUPERFAMILY SSF56425 232 349 3.44E-42 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 39 48 - T 22-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Gene3D G3DSA:3.50.50.60 345 417 2.0E-119 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 Gene3D G3DSA:3.50.50.60 3 238 2.0E-119 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS01535 222d2a5b502d0c4fbd46962c4a4bd019 575 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 6 575 8.4E-247 T 22-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 210 22.013 T 22-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 Gene3D G3DSA:3.40.1190.20 230 527 4.5E-73 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 12 211 5.6E-37 T 22-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 223 529 21.249 T 22-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 PANTHER PTHR12592 7 353 2.3E-103 T 22-04-2016 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 PANTHER PTHR12592 370 533 2.3E-103 T 22-04-2016 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 SUPERFAMILY SSF64153 4 244 3.66E-51 T 22-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 Gene3D G3DSA:3.40.50.10260 3 229 1.1E-58 T 22-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 223 525 3.0E-49 T 22-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 SUPERFAMILY SSF53613 221 526 3.6E-56 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 464 474 - T 22-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 Pfam PF01256 Carbohydrate kinase 246 521 1.1E-43 T 22-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 Pfam PF03853 YjeF-related protein N-terminus 26 189 1.4E-35 T 22-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 PANTHER PTHR12592:SF0 7 353 2.3E-103 T 22-04-2016 TRD_RS03735 0ef350ba4ffe1b9e4a6e5149b8514171 544 PANTHER PTHR12592:SF0 370 533 2.3E-103 T 22-04-2016 TRD_RS03365 7a93e15c41c2ca177cd0a9048df830db 154 Gene3D G3DSA:1.10.260.40 3 61 4.6E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS03365 7a93e15c41c2ca177cd0a9048df830db 154 SMART SM00530 7 62 1.8E-12 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 TRD_RS03365 7a93e15c41c2ca177cd0a9048df830db 154 SUPERFAMILY SSF47413 3 60 5.9E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS03365 7a93e15c41c2ca177cd0a9048df830db 154 Pfam PF13560 Helix-turn-helix domain 4 65 7.1E-18 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PANTHER PTHR11946:SF87 264 478 2.0E-272 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PANTHER PTHR11946:SF87 494 937 2.0E-272 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PANTHER PTHR11946:SF87 1 244 2.0E-272 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 9 848 4.8E-222 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF47323 649 893 1.53E-62 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PANTHER PTHR11946 264 478 2.0E-272 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PANTHER PTHR11946 494 937 2.0E-272 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PANTHER PTHR11946 1 244 2.0E-272 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:3.40.50.620 392 630 3.7E-108 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:3.40.50.620 8 196 3.7E-108 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:3.90.740.10 207 375 1.7E-51 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 633 3.3E-137 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 223 246 3.7E-17 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 515 528 3.7E-17 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 43 54 3.7E-17 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 387 402 3.7E-17 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF50677 202 389 1.15E-44 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 Pfam PF08264 Anticodon-binding domain of tRNA 682 833 2.6E-33 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 Gene3D G3DSA:1.10.730.10 642 825 1.0E-54 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF52374 9 198 2.68E-98 T 22-04-2016 TRD_RS05070 7c5b22e874ac8ede8798c35b367c3eb5 1059 SUPERFAMILY SSF52374 389 644 2.68E-98 T 22-04-2016 TRD_RS00410 bd6e07979144d1a241c9f2d7b435e03e 200 SUPERFAMILY SSF50475 6 176 5.4E-45 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 TRD_RS00410 bd6e07979144d1a241c9f2d7b435e03e 200 SMART SM00903 14 159 1.5E-29 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 TRD_RS00410 bd6e07979144d1a241c9f2d7b435e03e 200 Gene3D G3DSA:2.30.110.10 8 174 3.8E-46 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 TRD_RS00410 bd6e07979144d1a241c9f2d7b435e03e 200 PANTHER PTHR30466 10 197 4.6E-36 T 22-04-2016 TRD_RS00410 bd6e07979144d1a241c9f2d7b435e03e 200 Pfam PF01613 Flavin reductase like domain 18 154 2.3E-26 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 TIGRFAM TIGR00260 thrC: threonine synthase 60 387 9.4E-55 T 22-04-2016 IPR004450 Threonine synthase-like TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 76 380 5.3E-78 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 Gene3D G3DSA:3.40.50.1100 155 394 2.0E-60 T 22-04-2016 TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 Gene3D G3DSA:3.40.50.1100 97 154 3.8E-4 T 22-04-2016 TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 PANTHER PTHR10314 37 387 1.0E-95 T 22-04-2016 TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 SUPERFAMILY SSF53686 5 387 4.85E-92 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 103 117 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 TRD_RS08855 fd51520b1a676629320f28f908286c0d 411 PANTHER PTHR10314:SF5 37 387 1.0E-95 T 22-04-2016 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 PANTHER PTHR11365:SF10 2 512 2.0E-229 T 22-04-2016 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 Pfam PF01968 Hydantoinase/oxoprolinase 192 360 1.0E-28 T 22-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 Gene3D G3DSA:3.30.420.40 269 421 6.3E-5 T 22-04-2016 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 3 170 1.9E-33 T 22-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 SUPERFAMILY SSF53067 250 440 1.02E-19 T 22-04-2016 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 SUPERFAMILY SSF53067 4 76 1.02E-19 T 22-04-2016 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 PANTHER PTHR11365 2 512 2.0E-229 T 22-04-2016 TRD_RS08665 3800c16d91bbcb3441c36cd7bac1cea4 514 Gene3D G3DSA:3.30.420.40 4 66 7.7E-5 T 22-04-2016 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 81 195 1.4E-9 T 22-04-2016 IPR000014 PAS domain TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 Gene3D G3DSA:1.10.287.130 189 260 1.1E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 Gene3D G3DSA:3.30.450.20 81 188 2.1E-17 T 22-04-2016 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 311 419 3.0E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 SUPERFAMILY SSF47384 180 265 6.28E-20 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 375 3.42E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 361 3.42E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 398 3.42E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 417 3.42E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 SMART SM00388 197 264 5.5E-21 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 PANTHER PTHR24423 17 420 3.3E-110 T 22-04-2016 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 Pfam PF08448 PAS fold 90 193 2.5E-11 T 22-04-2016 IPR013656 PAS fold-4 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 SUPERFAMILY SSF55874 253 418 4.19E-51 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 SMART SM00091 84 151 1.3E-8 T 22-04-2016 IPR000014 PAS domain TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 264 2.5E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 SUPERFAMILY SSF55785 76 189 1.2E-13 T 22-04-2016 IPR000014 PAS domain TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 Gene3D G3DSA:3.30.565.10 265 420 5.1E-51 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07475 5ba7843b6c587c7c1387e17cf0928da2 421 SMART SM00387 310 420 1.1E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 62 182 3.3E-19 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 PANTHER PTHR18901 1 214 3.4E-63 T 22-04-2016 TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 8.7E-30 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 SUPERFAMILY SSF56784 1 213 2.1E-55 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 2.2E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 2.2E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.2E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 2.2E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 Gene3D G3DSA:3.40.50.1000 1 16 1.0E-47 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06855 3aea38b6de6aad96d6d627158d660cdd 219 Gene3D G3DSA:3.40.50.1000 88 214 1.0E-47 T 22-04-2016 IPR023214 HAD-like domain TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 SUPERFAMILY SSF55347 119 258 5.23E-54 T 22-04-2016 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 SUPERFAMILY SSF51735 5 143 8.61E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 378 6.8E-134 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 PANTHER PTHR30525 5 385 2.0E-199 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 377 45.971 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 SUPERFAMILY SSF69055 286 380 7.59E-30 T 22-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 Gene3D G3DSA:3.40.50.720 5 143 2.9E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 140 223 2.0E-37 T 22-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 Gene3D G3DSA:1.10.1740.10 296 379 5.6E-30 T 22-04-2016 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 Pfam PF13288 DXP reductoisomerase C-terminal domain 257 372 2.4E-39 T 22-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 125 1.9E-37 T 22-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS04620 cb612f1ddd133cdd145eec66e83f77ee 385 PIRSF PIRSF006205 3 384 1.2E-142 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS05860 177059dda1ac3654a9d63171b5b9b6a7 319 SUPERFAMILY SSF161098 90 303 7.33E-20 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05860 177059dda1ac3654a9d63171b5b9b6a7 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 317 2.3E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05860 177059dda1ac3654a9d63171b5b9b6a7 319 PANTHER PTHR30465:SF24 1 318 6.1E-142 T 22-04-2016 TRD_RS05860 177059dda1ac3654a9d63171b5b9b6a7 319 Gene3D G3DSA:1.10.3720.10 89 314 2.8E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05860 177059dda1ac3654a9d63171b5b9b6a7 319 PANTHER PTHR30465 1 318 6.1E-142 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 Gene3D G3DSA:3.40.630.10 401 483 1.6E-34 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 Gene3D G3DSA:3.40.630.10 324 356 1.6E-34 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 Gene3D G3DSA:3.40.630.10 6 192 1.6E-34 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 SUPERFAMILY SSF53187 401 471 3.77E-33 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 SUPERFAMILY SSF53187 347 356 3.77E-33 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 SUPERFAMILY SSF53187 11 188 3.77E-33 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 SUPERFAMILY SSF55031 223 322 1.92E-6 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 PANTHER PTHR30575 224 358 3.5E-28 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 PANTHER PTHR30575 395 491 3.5E-28 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 PANTHER PTHR30575 112 208 3.5E-28 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 PANTHER PTHR30575 1 92 3.5E-28 T 22-04-2016 TRD_RS04045 e455fa4a203fe2f139c837e5b8f80dba 538 Gene3D G3DSA:3.30.70.360 223 321 4.1E-5 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 SUPERFAMILY SSF55781 59 248 2.88E-52 T 22-04-2016 IPR029016 GAF domain-like TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 Gene3D G3DSA:1.10.10.10 2 74 5.0E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 PANTHER PTHR30136:SF2 2 257 1.3E-95 T 22-04-2016 TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 SUPERFAMILY SSF46785 3 74 7.61E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 PANTHER PTHR30136 2 257 1.3E-95 T 22-04-2016 TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 Pfam PF01614 Bacterial transcriptional regulator 124 243 3.3E-36 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 Pfam PF09339 IclR helix-turn-helix domain 4 53 2.6E-14 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 SMART SM00346 2 91 8.9E-19 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 TRD_RS06550 9c85a325efbb828e7288866c5b36ccd5 273 Gene3D G3DSA:3.30.450.40 77 249 1.0E-58 T 22-04-2016 IPR029016 GAF domain-like TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 Pfam PF08443 RimK-like ATP-grasp domain 94 282 3.3E-32 T 22-04-2016 IPR013651 ATP-grasp fold, RimK-type TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 SUPERFAMILY SSF56059 97 284 4.95E-45 T 22-04-2016 TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 Gene3D G3DSA:3.30.470.20 173 274 5.5E-18 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 11 283 3.2E-83 T 22-04-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 Gene3D G3DSA:3.30.1490.20 101 161 1.6E-13 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 Gene3D G3DSA:3.40.50.20 10 100 2.0E-25 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 PANTHER PTHR21621 1 298 5.3E-79 T 22-04-2016 TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 PANTHER PTHR21621:SF0 1 298 5.3E-79 T 22-04-2016 TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 SUPERFAMILY SSF52440 10 96 1.93E-18 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS07100 46bca53c6a66853f2689373680eb66b4 299 TIGRFAM TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX 11 287 6.5E-93 T 22-04-2016 IPR011870 Lysine biosynthesis enzyme LysX GO:0003824|GO:0005524|GO:0009085 TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:1.10.10.200 1 78 1.7E-33 T 22-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:3.30.1270.10 213 245 6.6E-35 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:3.30.1270.10 83 137 6.6E-35 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 SUPERFAMILY SSF75625 3 244 2.62E-88 T 22-04-2016 IPR029072 YebC-like TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 Pfam PF01709 Transcriptional regulator 5 238 3.0E-88 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 PANTHER PTHR12532 1 242 1.9E-106 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 33.412 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 Gene3D G3DSA:3.30.70.980 138 206 1.0E-21 T 22-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 TRD_RS05260 4761dbf705023b3c2e321c0b9f3d7d02 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 2.9E-92 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like TRD_RS07405 6bd6f2f74fd3e4fd9af0cf26ea122cc0 215 Gene3D G3DSA:1.10.10.10 157 211 7.9E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07405 6bd6f2f74fd3e4fd9af0cf26ea122cc0 215 Pfam PF07638 ECF sigma factor 48 211 4.4E-5 T 22-04-2016 IPR011517 RNA polymerase sigma-70 ECF-like TRD_RS07405 6bd6f2f74fd3e4fd9af0cf26ea122cc0 215 Gene3D G3DSA:1.10.1740.10 41 123 3.7E-4 T 22-04-2016 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 3.6E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 Pfam PF00072 Response regulator receiver domain 8 119 1.9E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 PANTHER PTHR26402 6 216 4.7E-68 T 22-04-2016 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 PANTHER PTHR26402:SF151 6 216 4.7E-68 T 22-04-2016 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 SMART SM00421 153 210 3.5E-26 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 Gene3D G3DSA:1.10.10.10 123 218 3.7E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 SMART SM00448 6 118 1.1E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.4E-13 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.4E-13 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.4E-13 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 SUPERFAMILY SSF46894 145 217 5.1E-24 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 Gene3D G3DSA:3.40.50.2300 4 122 8.8E-31 T 22-04-2016 TRD_RS08475 b1b90cf62b186642cfd3a4848a6d3a9f 221 SUPERFAMILY SSF52172 5 135 7.4E-29 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 Gene3D G3DSA:3.40.1060.10 160 264 2.6E-32 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 Pfam PF00330 Aconitase family (aconitate hydratase) 8 410 4.1E-99 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 3 415 2.8E-160 T 22-04-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 Gene3D G3DSA:3.30.499.10 1 159 1.6E-39 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 TIGRFAM TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit 3 417 1.5E-193 T 22-04-2016 IPR011823 3-isopropylmalate dehydratase, large subunit, bacteria GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 3 418 49.238 T 22-04-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 415 1.2E-180 T 22-04-2016 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 SUPERFAMILY SSF53732 1 418 3.92E-148 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PRINTS PR00415 Aconitase family signature 102 110 3.4E-16 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PRINTS PR00415 Aconitase family signature 113 126 3.4E-16 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PRINTS PR00415 Aconitase family signature 189 202 3.4E-16 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PRINTS PR00415 Aconitase family signature 203 216 3.4E-16 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PRINTS PR00415 Aconitase family signature 351 364 3.4E-16 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PRINTS PR00415 Aconitase family signature 127 142 3.4E-16 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 Gene3D G3DSA:3.30.499.10 272 418 2.1E-56 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 PANTHER PTHR11670 1 415 3.4E-188 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07920 c91e61d0f0a0d16ad61a535d244ae6ae 419 ProSitePatterns PS00450 Aconitase family signature 1. 291 307 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 SMART SM00642 17 395 3.1E-144 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 PANTHER PTHR10357 432 499 6.8E-179 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 SUPERFAMILY SSF51011 456 530 2.46E-7 T 22-04-2016 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 Gene3D G3DSA:3.20.20.80 180 454 7.2E-120 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 Gene3D G3DSA:3.20.20.80 8 108 7.2E-120 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 Pfam PF00128 Alpha amylase, catalytic domain 32 370 1.4E-98 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 SUPERFAMILY SSF51445 8 453 2.57E-147 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 PANTHER PTHR10357 2 400 6.8E-179 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 Pfam PF11941 Domain of unknown function (DUF3459) 439 525 2.2E-7 T 22-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 Gene3D G3DSA:2.60.40.1180 462 531 1.1E-8 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 PANTHER PTHR10357:SF11 2 400 6.8E-179 T 22-04-2016 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 PANTHER PTHR10357:SF11 432 499 6.8E-179 T 22-04-2016 TRD_RS00390 85aeca77d3e54d026f68d1655b95aa0a 535 Gene3D G3DSA:3.90.400.10 109 179 4.8E-33 T 22-04-2016 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 6 339 2.1E-127 T 22-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF50249 132 198 2.98E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 420 29.897 T 22-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Pfam PF00575 S1 RNA binding domain 133 195 4.4E-8 T 22-04-2016 IPR003029 S1 domain GO:0003676 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF69705 1 126 5.89E-39 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF54814 278 339 9.16E-16 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SMART SM00322 229 301 0.99 T 22-04-2016 IPR004087 K Homology domain GO:0003676 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SMART SM00322 302 355 2.4 T 22-04-2016 IPR004087 K Homology domain GO:0003676 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:2.40.50.140 128 197 1.8E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Pfam PF08529 NusA N-terminal domain 5 124 6.8E-38 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:3.30.1480.10 1 124 2.2E-42 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SMART SM00316 133 199 2.2E-9 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 PANTHER PTHR22648:SF0 1 439 4.0E-154 T 22-04-2016 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 SUPERFAMILY SSF54814 199 276 1.31E-29 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:3.30.300.20 198 276 3.7E-35 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Gene3D G3DSA:3.30.300.20 278 342 1.8E-27 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 PANTHER PTHR22648 1 439 4.0E-154 T 22-04-2016 TRD_RS03550 9e836a43fc96b677a96d975f88fcdd1b 439 Pfam PF13184 NusA-like KH domain 229 295 2.1E-28 T 22-04-2016 IPR025249 KH domain, NusA-like GO:0003723 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 75 94 1.9E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 1.9E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 142 159 1.9E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 44 64 1.9E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PRINTS PR00151 Porphobilinogen deaminase signature 123 140 1.9E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Pfam PF02602 Uroporphyrinogen-III synthase HemD 324 550 3.6E-63 T 22-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 SUPERFAMILY SSF54782 223 293 1.44E-12 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 210 5.6E-72 T 22-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.190.10 110 198 3.1E-35 T 22-04-2016 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 296 35.162 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PANTHER PTHR11557 1 279 7.2E-108 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 PANTHER PTHR11557 520 536 7.2E-108 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 SUPERFAMILY SSF53850 4 211 4.21E-72 T 22-04-2016 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.30.160.40 225 293 3.0E-12 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 22-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 SUPERFAMILY SSF69618 309 555 5.75E-69 T 22-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.50.10090 432 554 3.7E-33 T 22-04-2016 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.50.10090 305 430 1.9E-35 T 22-04-2016 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 293 2.7E-92 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Gene3D G3DSA:3.40.190.10 3 109 3.7E-41 T 22-04-2016 TRD_RS13575 32de5c85b2e06f4c06c8165980221e60 560 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 293 1.6E-12 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Gene3D G3DSA:1.10.8.10 145 189 3.9E-6 T 22-04-2016 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 SUPERFAMILY SSF50249 2 63 7.42E-13 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 PANTHER PTHR33796 2 191 8.0E-56 T 22-04-2016 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 189 27.098 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Pfam PF01330 RuvA N terminal domain 2 62 2.4E-15 T 22-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Gene3D G3DSA:2.40.50.140 2 66 1.7E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Gene3D G3DSA:1.10.150.20 68 139 6.0E-23 T 22-04-2016 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 188 6.8E-44 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 SMART SM00278 73 92 100.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 SMART SM00278 108 127 0.07 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Pfam PF14520 Helix-hairpin-helix domain 72 129 2.0E-13 T 22-04-2016 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 SUPERFAMILY SSF47781 65 134 2.32E-17 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 SUPERFAMILY SSF46929 145 189 5.89E-5 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 TRD_RS02900 a67d3d14320cd3b40644d37a8c423af1 191 Pfam PF07499 RuvA, C-terminal domain 146 188 3.2E-6 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 636 90.817 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 377 397 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 589 601 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 473 482 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 184 199 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 199 212 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 8 18 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 315 331 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 223 245 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 605 621 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR01159 DNA gyrase subunit B signature 363 377 3.5E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Gene3D G3DSA:3.30.230.10 223 394 5.0E-74 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF01751 Toprim domain 422 522 2.0E-17 T 22-04-2016 IPR006171 Toprim domain TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PANTHER PTHR10169 3 636 0.0 T 22-04-2016 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 636 1.4E-301 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 SUPERFAMILY SSF55874 7 221 1.44E-74 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Gene3D G3DSA:3.30.565.10 8 219 4.2E-90 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 SMART SM00433 37 629 0.0 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 SUPERFAMILY SSF54211 224 394 9.29E-61 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 SMART SM00387 33 179 3.6E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 ProSitePatterns PS00177 DNA topoisomerase II signature. 425 433 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Gene3D G3DSA:3.40.50.670 407 617 8.1E-97 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 568 584 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 507 524 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 271 284 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 423 437 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 115 129 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 72 85 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 37 52 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 489 505 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 PRINTS PR00418 DNA topoisomerase II family signature 527 539 4.7E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF00204 DNA gyrase B 224 393 1.6E-63 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 SUPERFAMILY SSF56719 397 630 4.97E-89 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 161 7.7E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS03815 370e1db1880bb00748e738bfa2297aa8 636 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 564 625 2.1E-30 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 Gene3D G3DSA:1.25.40.80 190 269 3.3E-34 T 22-04-2016 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 PANTHER PTHR11455:SF18 3 466 2.8E-175 T 22-04-2016 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 Gene3D G3DSA:3.40.50.620 2 158 1.6E-44 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 Pfam PF03441 FAD binding domain of DNA photolyase 261 459 9.5E-78 T 22-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 Gene3D G3DSA:1.10.579.10 270 463 1.1E-74 T 22-04-2016 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 SUPERFAMILY SSF52425 3 181 1.18E-46 T 22-04-2016 IPR006050 DNA photolyase, N-terminal TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 135 151 2.0E-26 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 310 326 2.0E-26 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 330 348 2.0E-26 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 PRINTS PR00147 DNA photolyase signature 369 383 2.0E-26 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 330 349 - T 22-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 PANTHER PTHR11455 3 466 2.8E-175 T 22-04-2016 TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 SUPERFAMILY SSF48173 184 464 1.16E-106 T 22-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 310 322 - T 22-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal TRD_RS06440 d7cb8a8e33b15c48ba0836fda2e7d573 467 Pfam PF00875 DNA photolyase 4 156 1.3E-42 T 22-04-2016 IPR006050 DNA photolyase, N-terminal TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 Pfam PF01634 ATP phosphoribosyltransferase 54 227 2.2E-40 T 22-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 217 321 1.2E-15 T 22-04-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 4 322 26.447 T 22-04-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 SUPERFAMILY SSF53850 4 220 2.88E-50 T 22-04-2016 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 Gene3D G3DSA:3.40.190.10 137 194 3.6E-21 T 22-04-2016 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 Gene3D G3DSA:3.30.70.120 240 321 1.0E-10 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 Pfam PF08029 HisG, C-terminal domain 236 316 1.8E-15 T 22-04-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 164 185 - T 22-04-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 PANTHER PTHR21403 5 323 7.9E-104 T 22-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 PANTHER PTHR21403:SF0 5 323 7.9E-104 T 22-04-2016 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 5 207 6.2E-61 T 22-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 SUPERFAMILY SSF54913 238 320 5.56E-7 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS02910 5f8bc774121daf6543c707fce93a5805 339 Gene3D G3DSA:3.40.190.10 5 136 2.4E-29 T 22-04-2016 TRD_RS08710 a88e026377c274d2ddbd3012b09273f9 75 Pfam PF00462 Glutaredoxin 5 64 5.6E-12 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 TRD_RS08710 a88e026377c274d2ddbd3012b09273f9 75 SUPERFAMILY SSF52833 2 64 5.24E-12 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS08710 a88e026377c274d2ddbd3012b09273f9 75 Gene3D G3DSA:3.40.30.10 3 64 2.4E-10 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS04315 2d66c07bfa39aed0cd854132d90fb640 123 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 12 114 22.529 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS TRD_RS04315 2d66c07bfa39aed0cd854132d90fb640 123 PANTHER PTHR21043 12 119 1.3E-30 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS TRD_RS04315 2d66c07bfa39aed0cd854132d90fb640 123 Gene3D G3DSA:3.30.460.10 13 116 7.3E-32 T 22-04-2016 TRD_RS04315 2d66c07bfa39aed0cd854132d90fb640 123 SUPERFAMILY SSF81301 12 119 4.9E-33 T 22-04-2016 TRD_RS04315 2d66c07bfa39aed0cd854132d90fb640 123 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 16 113 4.1E-29 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS TRD_RS04315 2d66c07bfa39aed0cd854132d90fb640 123 Pfam PF02410 Ribosomal silencing factor during starvation 20 113 1.2E-23 T 22-04-2016 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PANTHER PTHR30009 473 660 2.9E-159 T 22-04-2016 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 317 636 8.6E-61 T 22-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PANTHER PTHR30009:SF0 1 416 2.9E-159 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 188 203 1.3E-16 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 3 27 1.3E-16 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.3E-16 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 393 412 1.3E-16 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 350 367 1.3E-16 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PANTHER PTHR30009 1 416 2.9E-159 T 22-04-2016 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 79 105 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 158 180 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 243 263 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 131 148 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 273 293 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 209 235 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 293 309 1.0E-50 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 PANTHER PTHR30009:SF0 473 660 2.9E-159 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05705 69651da5c8cf44bb4b3e6588c16d6c21 661 Pfam PF01578 Cytochrome C assembly protein 92 295 2.3E-39 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 TRD_RS02180 00bf4a367578e16d5407671608f9db8e 646 SUPERFAMILY SSF46785 29 115 1.58E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 SUPERFAMILY SSF52540 331 616 4.32E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 TIGRFAM TIGR00763 lon: endopeptidase La 36 802 1.0E-287 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 708 716 - T 22-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:3.30.230.10 622 803 5.1E-72 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 SMART SM00464 34 226 2.8E-54 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Hamap MF_01973 Lon protease [lon]. 35 804 69.75 T 22-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 SUPERFAMILY SSF54211 627 803 9.48E-56 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 601 803 8.5E-89 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:1.10.8.60 523 615 1.5E-30 T 22-04-2016 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PANTHER PTHR10046 35 808 0.0 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 SMART SM00382 379 524 7.5E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PIRSF PIRSF001174 18 806 0.0 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 383 521 4.3E-23 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 SUPERFAMILY SSF88697 35 224 8.45E-47 T 22-04-2016 IPR015947 PUA-like domain TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Gene3D G3DSA:3.40.50.300 339 520 3.5E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 35 225 1.6E-40 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 627 643 1.9E-49 T 22-04-2016 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 387 406 1.9E-49 T 22-04-2016 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 705 724 1.9E-49 T 22-04-2016 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 758 776 1.9E-49 T 22-04-2016 TRD_RS04705 e11381db0816954e86d35ac0d0faf492 832 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 735 754 1.9E-49 T 22-04-2016 TRD_RS00750 d70631d6e73eba63282b088ab8c79252 234 PANTHER PTHR11921 18 234 5.9E-50 T 22-04-2016 TRD_RS00750 d70631d6e73eba63282b088ab8c79252 234 SUPERFAMILY SSF46548 26 119 4.19E-15 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS00750 d70631d6e73eba63282b088ab8c79252 234 Gene3D G3DSA:1.10.1060.10 23 120 4.3E-14 T 22-04-2016 TRD_RS00750 d70631d6e73eba63282b088ab8c79252 234 Pfam PF13183 4Fe-4S dicluster domain 41 101 3.3E-7 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS00750 d70631d6e73eba63282b088ab8c79252 234 PANTHER PTHR11921:SF25 18 234 5.9E-50 T 22-04-2016 TRD_RS00750 d70631d6e73eba63282b088ab8c79252 234 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 43 54 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS00655 98f912350a6ccc99e3c79673e5e8fdda 293 SUPERFAMILY SSF161098 52 277 2.88E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00655 98f912350a6ccc99e3c79673e5e8fdda 293 Gene3D G3DSA:1.10.3720.10 4 279 4.5E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00655 98f912350a6ccc99e3c79673e5e8fdda 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 287 5.4E-11 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00655 98f912350a6ccc99e3c79673e5e8fdda 293 PANTHER PTHR30193 2 285 6.4E-64 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 Gene3D G3DSA:3.40.50.720 3 139 3.2E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 PANTHER PTHR33303 11 444 3.2E-153 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 PANTHER PTHR33303 474 716 3.2E-153 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 SUPERFAMILY SSF56059 502 715 7.07E-38 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 Pfam PF13549 ATP-grasp domain 500 715 6.4E-53 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 SUPERFAMILY SSF51735 5 146 3.23E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 164 299 4.1E-35 T 22-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 Gene3D G3DSA:3.40.50.261 140 297 3.4E-16 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 Gene3D G3DSA:3.30.470.20 505 623 3.2E-8 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 PANTHER PTHR33303:SF3 11 444 3.2E-153 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 PANTHER PTHR33303:SF3 474 716 3.2E-153 T 22-04-2016 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 SUPERFAMILY SSF52210 141 300 1.83E-28 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 SUPERFAMILY SSF52210 305 464 8.77E-29 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 SMART SM00881 16 110 3.5E-24 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS00565 9a8dbfb499574980b8f7f8bf810ca43f 723 Pfam PF13380 CoA binding domain 20 144 6.2E-21 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 Pfam PF11896 Domain of unknown function (DUF3416) 13 194 1.9E-59 T 22-04-2016 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:2.60.40.1180 562 642 4.7E-7 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 SMART SM00642 200 550 0.005 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 PANTHER PTHR10357:SF137 12 138 1.7E-228 T 22-04-2016 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 PANTHER PTHR10357:SF137 166 665 1.7E-228 T 22-04-2016 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 SUPERFAMILY SSF51445 171 557 7.68E-86 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 PANTHER PTHR10357 12 138 1.7E-228 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 PANTHER PTHR10357 166 665 1.7E-228 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 Pfam PF00128 Alpha amylase, catalytic domain 227 323 1.8E-4 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:3.20.20.80 152 555 2.3E-71 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 Gene3D G3DSA:3.20.20.80 65 106 2.3E-71 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS09015 0ec58b96d6e82df831b5203277bdb2f4 665 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 11 653 48.912 T 22-04-2016 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 SUPERFAMILY SSF46626 176 269 2.29E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 198 266 4.6E-10 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 85 167 2.9E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 SUPERFAMILY SSF46626 63 176 4.8E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 PRINTS PR00605 Class IC cytochrome C signature 145 167 6.3E-5 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 PRINTS PR00605 Class IC cytochrome C signature 95 106 6.3E-5 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 Gene3D G3DSA:1.10.760.10 190 269 1.5E-10 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 PANTHER PTHR35008:SF5 86 169 4.5E-13 T 22-04-2016 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 Gene3D G3DSA:1.10.760.10 73 174 7.0E-22 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS13640 993502c404b6f31104a340528979dc5f 273 PANTHER PTHR35008 86 169 4.5E-13 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 2.5E-9 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 2.5E-9 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 2.5E-9 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 2.5E-9 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 Pfam PF00206 Lyase 7 281 4.7E-53 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.1E-24 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 1.1E-24 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 1.1E-24 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 1.1E-24 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 428 6.1E-23 T 22-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 Gene3D G3DSA:1.20.200.10 91 357 6.3E-90 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 SMART SM00998 349 429 5.6E-34 T 22-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 Gene3D G3DSA:1.10.275.10 2 90 6.3E-29 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 SUPERFAMILY SSF48557 3 427 3.61E-128 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 428 4.5E-159 T 22-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PANTHER PTHR11444 4 422 3.3E-154 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 PANTHER PTHR11444:SF2 4 422 3.3E-154 T 22-04-2016 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 TRD_RS03400 51d56244686dc61ec36269e148494b9a 441 Gene3D G3DSA:1.10.40.30 358 429 3.9E-28 T 22-04-2016 TRD_RS03305 3cf73177fa391130c1345c44321751a3 63 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 8 59 21.926 T 22-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 TRD_RS03305 3cf73177fa391130c1345c44321751a3 63 PANTHER PTHR33505:SF2 8 56 1.5E-16 T 22-04-2016 TRD_RS03305 3cf73177fa391130c1345c44321751a3 63 SUPERFAMILY SSF158997 8 58 7.72E-18 T 22-04-2016 TRD_RS03305 3cf73177fa391130c1345c44321751a3 63 Gene3D G3DSA:2.20.25.10 15 56 7.2E-18 T 22-04-2016 TRD_RS03305 3cf73177fa391130c1345c44321751a3 63 Pfam PF03966 Trm112p-like protein 9 46 1.2E-8 T 22-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 TRD_RS03305 3cf73177fa391130c1345c44321751a3 63 PANTHER PTHR33505 8 56 1.5E-16 T 22-04-2016 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 PIRSF PIRSF005917 1 275 1.1E-99 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 Gene3D G3DSA:3.30.950.10 110 219 8.0E-41 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 Gene3D G3DSA:3.40.1010.10 2 109 9.9E-18 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 4 270 1.9E-75 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 80 91 - T 22-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 201 5.2E-35 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 PANTHER PTHR21091:SF18 1 237 7.3E-82 T 22-04-2016 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 3 220 36.284 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 SUPERFAMILY SSF53790 1 218 1.96E-79 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 TRD_RS08240 b37bfa81fd4cae662a99299fd35217c4 294 PANTHER PTHR21091 1 237 7.3E-82 T 22-04-2016 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 ProSitePatterns PS01135 FtsZ protein signature 2. 99 120 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 Gene3D G3DSA:3.40.50.1440 15 216 4.9E-92 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 13 321 2.2E-123 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 ProSitePatterns PS01134 FtsZ protein signature 1. 46 80 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 11 343 37.306 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 15 175 9.8E-42 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 PRINTS PR00423 Cell division protein FtsZ signature 128 149 1.4E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 PRINTS PR00423 Cell division protein FtsZ signature 214 235 1.4E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 PRINTS PR00423 Cell division protein FtsZ signature 191 213 1.4E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 PRINTS PR00423 Cell division protein FtsZ signature 100 120 1.4E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 SUPERFAMILY SSF55307 206 319 5.04E-37 T 22-04-2016 IPR008280 Tubulin/FtsZ, C-terminal TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 SMART SM00865 209 327 4.1E-39 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 SUPERFAMILY SSF52490 14 210 2.22E-68 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 Gene3D G3DSA:3.30.1330.20 217 320 1.9E-40 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 SMART SM00864 15 207 4.6E-110 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 PANTHER PTHR30314 7 318 1.4E-174 T 22-04-2016 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 PANTHER PTHR30314:SF3 7 318 1.4E-174 T 22-04-2016 TRD_RS00315 5be981b98e0d31337392a821e8f6cf15 369 Pfam PF12327 FtsZ family, C-terminal domain 224 318 1.5E-25 T 22-04-2016 IPR024757 Cell division protein FtsZ, C-terminal TRD_RS01905 89763033cbb836dd9c24c7468c438327 312 PANTHER PTHR30011 6 308 5.1E-55 T 22-04-2016 TRD_RS01905 89763033cbb836dd9c24c7468c438327 312 SUPERFAMILY SSF51679 3 310 7.07E-70 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS01905 89763033cbb836dd9c24c7468c438327 312 Gene3D G3DSA:3.20.20.30 4 310 8.6E-81 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS01905 89763033cbb836dd9c24c7468c438327 312 Pfam PF00296 Luciferase-like monooxygenase 11 254 7.3E-50 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS03685 d92e5b1de1a7ffa43718aec2607702fc 136 SUPERFAMILY SSF52242 3 127 4.45E-50 T 22-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 TRD_RS03685 d92e5b1de1a7ffa43718aec2607702fc 136 PANTHER PTHR23408 3 110 5.4E-58 T 22-04-2016 TRD_RS03685 d92e5b1de1a7ffa43718aec2607702fc 136 Pfam PF02310 B12 binding domain 5 116 2.3E-23 T 22-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 TRD_RS03685 d92e5b1de1a7ffa43718aec2607702fc 136 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 4 131 3.1E-58 T 22-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 TRD_RS03685 d92e5b1de1a7ffa43718aec2607702fc 136 Gene3D G3DSA:3.40.50.280 3 128 1.6E-56 T 22-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 185 211 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 215 240 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 376 394 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 335 360 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 244 265 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 150 176 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 266 285 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PRINTS PR00083 Histidinol dehydrogenase signature 50 74 1.0E-81 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PANTHER PTHR21256 47 448 1.2E-196 T 22-04-2016 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 SUPERFAMILY SSF53720 47 442 1.73E-73 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 6 442 40.594 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 Gene3D G3DSA:3.40.50.1980 239 387 1.1E-60 T 22-04-2016 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 50 441 5.3E-156 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 Gene3D G3DSA:3.40.50.1980 48 238 5.9E-73 T 22-04-2016 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 244 276 - T 22-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 Pfam PF00815 Histidinol dehydrogenase 48 442 7.6E-154 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS02905 df2acfd0e9c96b00869bc148c7747041 448 PIRSF PIRSF000099 10 445 3.5E-162 T 22-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 SUPERFAMILY SSF52540 336 429 3.25E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 SUPERFAMILY SSF52540 39 178 3.25E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 SUPERFAMILY SSF52540 243 293 3.25E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031 321 524 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 SMART SM00487 24 208 2.4E-31 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031:SF307 748 848 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031:SF307 30 212 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031:SF307 321 524 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 Gene3D G3DSA:3.40.50.300 23 196 1.4E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 Pfam PF00270 DEAD/DEAH box helicase 30 177 3.0E-20 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031 30 212 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031 253 278 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031:SF307 253 278 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 SMART SM01142 766 940 1.6E-34 T 22-04-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 Pfam PF00271 Helicase conserved C-terminal domain 343 416 2.4E-5 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 PANTHER PTHR24031 748 848 1.4E-13 T 22-04-2016 TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 SMART SM00490 330 416 5.8E-12 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 Pfam PF08148 DSHCT (NUC185) domain 771 934 3.1E-22 T 22-04-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 Gene3D G3DSA:3.40.50.300 262 296 2.7E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00820 b08eabfe660a2e2ba617721a1a6d1e46 948 Gene3D G3DSA:3.40.50.300 339 422 2.7E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Pfam PF00990 Diguanylate cyclase, GGDEF domain 489 646 1.1E-43 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SMART SM00267 478 650 5.2E-61 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Gene3D G3DSA:3.30.70.270 490 655 2.4E-55 T 22-04-2016 TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SUPERFAMILY SSF55781 43 199 4.36E-11 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SMART SM00086 436 478 1.6E-4 T 22-04-2016 IPR001610 PAC motif TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SUPERFAMILY SSF55785 377 485 1.93E-17 T 22-04-2016 IPR000014 PAS domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 486 649 2.2E-47 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SMART SM00052 660 899 1.6E-67 T 22-04-2016 IPR001633 EAL domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SUPERFAMILY SSF55781 221 370 1.94E-14 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Pfam PF00563 EAL domain 667 894 9.4E-63 T 22-04-2016 IPR001633 EAL domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Gene3D G3DSA:3.30.450.40 26 199 1.2E-12 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Gene3D G3DSA:3.30.450.40 207 367 7.8E-14 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Gene3D G3DSA:3.30.450.20 368 476 5.3E-17 T 22-04-2016 TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SUPERFAMILY SSF141868 668 897 1.96E-70 T 22-04-2016 IPR001633 EAL domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 368 485 8.5E-14 T 22-04-2016 IPR000014 PAS domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Pfam PF00989 PAS fold 366 475 1.2E-10 T 22-04-2016 IPR013767 PAS fold GO:0006355 TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 PANTHER PTHR33121 625 899 5.6E-62 T 22-04-2016 TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SUPERFAMILY SSF55073 494 652 7.14E-50 T 22-04-2016 IPR029787 Nucleotide cyclase TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Gene3D G3DSA:3.20.20.450 669 897 3.3E-69 T 22-04-2016 IPR001633 EAL domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 Pfam PF13185 GAF domain 218 357 3.7E-7 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 SMART SM00091 365 431 8.6E-6 T 22-04-2016 IPR000014 PAS domain TRD_RS13765 90d0a278c2ffa6ab38325fee3775b1bc 900 PANTHER PTHR33121:SF10 625 899 5.6E-62 T 22-04-2016 TRD_RS03885 7cded0a7d4a7368549ea25119298f75d 175 PANTHER PTHR21666 1 108 1.7E-17 T 22-04-2016 TRD_RS03885 7cded0a7d4a7368549ea25119298f75d 175 SUPERFAMILY SSF51261 4 120 1.83E-22 T 22-04-2016 IPR011055 Duplicated hybrid motif TRD_RS03885 7cded0a7d4a7368549ea25119298f75d 175 Gene3D G3DSA:2.70.70.10 6 123 3.2E-25 T 22-04-2016 TRD_RS03885 7cded0a7d4a7368549ea25119298f75d 175 Pfam PF01551 Peptidase family M23 18 109 7.6E-18 T 22-04-2016 IPR016047 Peptidase M23 TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 PANTHER PTHR35788:SF1 274 738 1.4E-84 T 22-04-2016 TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 SMART SM01208 662 738 3.1E-9 T 22-04-2016 IPR011098 G5 domain TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 PANTHER PTHR35788 274 738 1.4E-84 T 22-04-2016 TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF07501 G5 domain 669 736 1.3E-4 T 22-04-2016 IPR011098 G5 domain TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF12229 Putative peptidoglycan binding domain 272 342 2.0E-9 T 22-04-2016 IPR022029 Putative peptidoglycan binding domain TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF12229 Putative peptidoglycan binding domain 103 211 3.3E-8 T 22-04-2016 IPR022029 Putative peptidoglycan binding domain TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF12229 Putative peptidoglycan binding domain 398 473 6.4E-9 T 22-04-2016 IPR022029 Putative peptidoglycan binding domain TRD_RS04000 effd7af4c12ef78508c2ea53a6a09cfb 769 Pfam PF04294 VanW like protein 513 653 2.3E-40 T 22-04-2016 IPR007391 Vancomycin resistance VanW TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 Hamap MF_01227 CTP synthase [pyrG]. 2 530 51.832 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 TIGRFAM TIGR00337 PyrG: CTP synthase 3 523 1.2E-242 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 SUPERFAMILY SSF52317 289 529 3.32E-81 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 Gene3D G3DSA:3.40.50.880 289 530 1.2E-97 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 Pfam PF00117 Glutamine amidotransferase class-I 302 523 9.3E-55 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 Gene3D G3DSA:3.40.50.300 2 285 2.1E-133 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 SUPERFAMILY SSF52540 2 269 1.89E-120 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 PANTHER PTHR11550 1 523 0.0 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 TRD_RS05770 677c13e1ab272511fd379629c322dbf0 551 Pfam PF06418 CTP synthase N-terminus 3 265 5.3E-126 T 22-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 589 605 1.22E-39 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 697 716 1.22E-39 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 720 738 1.22E-39 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 667 686 1.22E-39 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 345 364 1.22E-39 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:3.40.50.300 302 479 1.4E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 14 199 3.9E-19 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 SUPERFAMILY SSF88697 15 199 6.71E-25 T 22-04-2016 IPR015947 PUA-like domain TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 341 479 1.0E-21 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 SUPERFAMILY SSF54211 589 764 4.55E-48 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:1.10.8.60 481 578 9.5E-28 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 SUPERFAMILY SSF52540 295 569 4.36E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 TIGRFAM TIGR00763 lon: endopeptidase La 232 765 2.3E-208 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 564 765 2.9E-68 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PANTHER PTHR10046 12 770 1.7E-293 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 PANTHER PTHR10046:SF24 12 770 1.7E-293 T 22-04-2016 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 Gene3D G3DSA:3.30.230.10 583 764 8.1E-59 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 SMART SM00464 13 200 5.1E-19 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 TRD_RS07310 a54a75ff8abc07df046901f8ffbb88b2 772 SMART SM00382 337 485 2.5E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 Gene3D G3DSA:3.30.559.10 211 441 5.5E-80 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 SUPERFAMILY SSF52777 210 441 1.69E-76 T 22-04-2016 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 Gene3D G3DSA:2.40.50.100 4 89 2.6E-31 T 22-04-2016 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 Pfam PF02817 e3 binding domain 127 162 4.6E-18 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 211 440 5.3E-79 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 PANTHER PTHR23151 3 440 4.2E-169 T 22-04-2016 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 SUPERFAMILY SSF47005 122 165 1.44E-13 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 Pfam PF00364 Biotin-requiring enzyme 5 76 1.1E-21 T 22-04-2016 IPR000089 Biotin/lipoyl attachment TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 Gene3D G3DSA:4.10.320.10 123 173 8.4E-22 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS08120 99fd3b509eb34cf818c5f70026b1a9ca 442 SUPERFAMILY SSF51230 2 90 7.33E-28 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS08575 31f29672e8997d315bddf4eeb07e22f3 199 PANTHER PTHR13256 13 185 8.6E-38 T 22-04-2016 TRD_RS08575 31f29672e8997d315bddf4eeb07e22f3 199 SUPERFAMILY SSF55729 13 179 8.83E-39 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS08575 31f29672e8997d315bddf4eeb07e22f3 199 PANTHER PTHR13256:SF39 13 185 8.6E-38 T 22-04-2016 TRD_RS08575 31f29672e8997d315bddf4eeb07e22f3 199 Pfam PF13302 Acetyltransferase (GNAT) domain 18 155 1.2E-23 T 22-04-2016 IPR000182 GNAT domain GO:0008080 TRD_RS08575 31f29672e8997d315bddf4eeb07e22f3 199 Gene3D G3DSA:3.40.630.30 13 184 3.3E-41 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 Gene3D G3DSA:3.30.450.40 5 163 7.1E-15 T 22-04-2016 IPR029016 GAF domain-like TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 SUPERFAMILY SSF55781 9 151 2.75E-13 T 22-04-2016 IPR029016 GAF domain-like TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 Pfam PF13185 GAF domain 376 489 2.8E-11 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 Pfam PF13185 GAF domain 7 151 6.8E-8 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 Gene3D G3DSA:3.30.450.40 329 490 9.8E-23 T 22-04-2016 IPR029016 GAF domain-like TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 SUPERFAMILY SSF55781 321 490 5.02E-22 T 22-04-2016 IPR029016 GAF domain-like TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 Gene3D G3DSA:3.30.450.40 666 814 1.3E-14 T 22-04-2016 IPR029016 GAF domain-like TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 SMART SM00065 353 500 1.9E-7 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 SMART SM00065 8 165 7.6E-9 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 SMART SM00065 684 815 0.14 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 Pfam PF13492 GAF domain 692 815 9.3E-7 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05050 a75a47c92fd945e330923b858ed3d2cc 815 SUPERFAMILY SSF55781 684 815 7.41E-17 T 22-04-2016 IPR029016 GAF domain-like TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PANTHER PTHR11946 10 515 1.8E-206 T 22-04-2016 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PANTHER PTHR11946 544 578 1.8E-206 T 22-04-2016 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:1.10.730.10 381 567 7.9E-40 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Pfam PF08264 Anticodon-binding domain of tRNA 421 513 4.2E-7 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PANTHER PTHR11946:SF86 10 515 1.8E-206 T 22-04-2016 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PANTHER PTHR11946:SF86 544 578 1.8E-206 T 22-04-2016 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 10 514 2.3E-154 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:2.20.28.20 143 174 7.8E-19 T 22-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF47323 390 517 1.53E-32 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF47323 548 578 1.53E-32 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF52374 3 139 1.45E-95 T 22-04-2016 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF52374 174 385 1.45E-95 T 22-04-2016 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 2.9E-22 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 2.9E-22 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 2.9E-22 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 2.9E-22 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 2.9E-22 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 2.9E-22 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Pfam PF09334 tRNA synthetases class I (M) 7 397 6.1E-149 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 578 39.597 T 22-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 SUPERFAMILY SSF57770 140 174 6.15E-12 T 22-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:3.40.50.620 5 142 1.7E-89 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS07150 b77b236f1c753c285b99b414f277e06b 584 Gene3D G3DSA:3.40.50.620 181 380 1.7E-89 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 PANTHER PTHR10277:SF5 29 552 2.8E-246 T 22-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 SMART SM00917 402 544 7.4E-35 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 Pfam PF08502 LeuA allosteric (dimerisation) domain 404 541 6.2E-24 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 39 55 - T 22-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 Gene3D G3DSA:3.20.20.70 20 376 6.0E-118 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 SUPERFAMILY SSF51569 28 320 2.38E-79 T 22-04-2016 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 PANTHER PTHR10277 29 552 2.8E-246 T 22-04-2016 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 SUPERFAMILY SSF110921 429 540 4.58E-18 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 Pfam PF00682 HMGL-like 32 303 2.6E-43 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 TRD_RS01690 1df0ef4de891c315ab146d3545f267a6 562 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 32 545 6.9E-207 T 22-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 TRD_RS06470 3f2c422d4e41743c244c9dfd2945058a 119 PANTHER PTHR35983 2 105 3.5E-40 T 22-04-2016 TRD_RS06470 3f2c422d4e41743c244c9dfd2945058a 119 Pfam PF02641 Uncharacterized ACR, COG1993 9 104 4.0E-39 T 22-04-2016 IPR003793 Domain of unknown function DUF190 TRD_RS06470 3f2c422d4e41743c244c9dfd2945058a 119 Gene3D G3DSA:3.30.70.120 2 109 3.0E-44 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal TRD_RS06470 3f2c422d4e41743c244c9dfd2945058a 119 SUPERFAMILY SSF54913 6 105 2.11E-36 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 ProSitePatterns PS00651 Ribosomal protein L9 signature. 14 41 - T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 149 2.1E-37 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 PANTHER PTHR21368 2 151 2.0E-42 T 22-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 SUPERFAMILY SSF55658 2 56 1.74E-15 T 22-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 Gene3D G3DSA:3.40.5.10 2 50 1.0E-19 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 2 149 22.964 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 Pfam PF03948 Ribosomal protein L9, C-terminal domain 67 147 4.3E-22 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 45 3.4E-21 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 SUPERFAMILY SSF55653 59 149 9.16E-23 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal TRD_RS03180 01716a7a9d203c42263c371f069cbf53 158 Gene3D G3DSA:3.10.430.100 64 149 1.1E-23 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 PANTHER PTHR30290 10 571 3.2E-117 T 22-04-2016 TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 119 488 2.0E-84 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 SUPERFAMILY SSF53850 66 569 3.08E-122 T 22-04-2016 TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 PANTHER PTHR30290:SF10 10 571 3.2E-117 T 22-04-2016 TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 Gene3D G3DSA:3.40.190.10 178 341 5.4E-44 T 22-04-2016 TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 PIRSF PIRSF002741 22 571 5.1E-88 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS08700 6a9a5f15dbccc080d7713fda8829546b 573 Gene3D G3DSA:3.10.105.10 342 544 6.8E-48 T 22-04-2016 TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 123 2.2E-9 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 157 275 2.8E-12 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 13 317 1.3E-108 T 22-04-2016 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 PANTHER PTHR21366:SF10 8 83 5.4E-102 T 22-04-2016 TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 PANTHER PTHR21366:SF10 200 331 5.4E-102 T 22-04-2016 TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 PANTHER PTHR21366 8 83 5.4E-102 T 22-04-2016 TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 PANTHER PTHR21366 200 331 5.4E-102 T 22-04-2016 TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 Gene3D G3DSA:3.10.180.10 9 135 5.0E-35 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 SUPERFAMILY SSF54593 8 276 1.14E-41 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 Gene3D G3DSA:3.10.180.10 157 297 2.2E-36 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS01505 668c80f9dd28f6a794faff59dd5d373f 331 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 253 274 - T 22-04-2016 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 ProSitePatterns PS00380 Rhodanese signature 1. 82 93 - T 22-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 PANTHER PTHR11364:SF3 38 319 6.2E-59 T 22-04-2016 TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 PANTHER PTHR11364 38 319 6.2E-59 T 22-04-2016 TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 Pfam PF00581 Rhodanese-like domain 200 311 5.4E-10 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 Pfam PF00581 Rhodanese-like domain 59 168 1.4E-16 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 Gene3D G3DSA:3.40.250.10 190 321 4.9E-28 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 SUPERFAMILY SSF52821 190 319 7.2E-24 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 Gene3D G3DSA:3.40.250.10 55 179 6.3E-33 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 SUPERFAMILY SSF52821 56 222 4.45E-33 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 SMART SM00450 196 316 1.3E-12 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS08190 47969481cb5d043a70edb4ef9085e8b9 326 SMART SM00450 57 172 1.5E-21 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS04015 504b83e8744782d0921adbee6569f772 155 Hamap MF_00105 Transcription elongation factor GreA [greA]. 4 155 23.896 T 22-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 PIRSF PIRSF006092 1 155 2.8E-44 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 1.3E-19 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 SUPERFAMILY SSF54534 82 154 1.96E-19 T 22-04-2016 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 PANTHER PTHR30437 1 155 1.2E-45 T 22-04-2016 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 Gene3D G3DSA:1.10.287.180 5 77 7.9E-19 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 155 2.4E-25 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 SUPERFAMILY SSF46557 5 77 1.19E-16 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 TRD_RS04015 504b83e8744782d0921adbee6569f772 155 Gene3D G3DSA:3.10.50.30 81 155 1.0E-25 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:3.40.440.10 197 266 5.2E-63 T 22-04-2016 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:3.40.440.10 1 93 5.2E-63 T 22-04-2016 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:1.10.300.10 100 196 1.6E-28 T 22-04-2016 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 181.26 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 SMART SM00788 3 424 9.4E-247 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 SUPERFAMILY SSF52540 1 425 9.14E-158 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 PANTHER PTHR11846 3 428 1.2E-220 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 423 2.0E-155 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 Pfam PF00709 Adenylosuccinate synthetase 4 422 8.3E-164 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 Gene3D G3DSA:3.90.170.10 267 425 6.5E-70 T 22-04-2016 TRD_RS03030 384e9c36bc496bc9cc0a0230e65fa95e 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 22-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 Pfam PF14698 Argininosuccinate lyase C-terminal 367 423 5.7E-19 T 22-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 279 295 6.5E-67 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 314 333 6.5E-67 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 235 259 6.5E-67 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 105 127 6.5E-67 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 197 213 6.5E-67 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00145 Argininosuccinate lyase family signature 146 166 6.5E-67 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 Pfam PF00206 Lyase 10 304 4.8E-78 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PANTHER PTHR11444:SF3 6 458 6.0E-221 T 22-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 Gene3D G3DSA:1.10.40.30 378 422 8.8E-22 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 Gene3D G3DSA:1.10.275.10 6 110 3.3E-38 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PANTHER PTHR11444 6 458 6.0E-221 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 SUPERFAMILY SSF48557 7 453 2.04E-140 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 Hamap MF_00006 Argininosuccinate lyase [argH]. 6 456 43.261 T 22-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 TIGRFAM TIGR00838 argH: argininosuccinate lyase 7 456 3.9E-183 T 22-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 Gene3D G3DSA:1.20.200.10 111 377 1.8E-99 T 22-04-2016 TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 151 169 3.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 106 124 3.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 3.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS00800 4a479e8525e3a626b19efa2b55f719b6 485 PRINTS PR00149 Fumarate lyase superfamily signature 235 262 3.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 PANTHER PTHR23305:SF12 1 367 2.8E-130 T 22-04-2016 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:3.10.20.30 271 367 1.7E-42 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 367 38.662 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 6 367 7.3E-96 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Pfam PF01926 50S ribosome-binding GTPase 5 120 2.2E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.2E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.2E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 86 104 1.2E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 PANTHER PTHR23305 1 367 2.8E-130 T 22-04-2016 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 SUPERFAMILY SSF81271 283 367 3.71E-33 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 PIRSF PIRSF006641 1 367 4.2E-100 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:3.40.50.300 204 270 2.7E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:3.40.50.300 5 129 2.7E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Pfam PF06071 Protein of unknown function (DUF933) 283 366 1.2E-36 T 22-04-2016 IPR013029 Domain of unknown function DUF933 TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 Gene3D G3DSA:1.10.150.300 130 203 1.1E-20 T 22-04-2016 IPR023192 TGS-like domain TRD_RS08405 a4856208e3b7b5ba268c7a5a4636f73a 367 SUPERFAMILY SSF52540 5 305 6.96E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 6 175 3.4E-41 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 175 2.2E-50 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 6 25 1.9E-26 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.9E-26 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.9E-26 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.9E-26 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.9E-26 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 22-04-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 SUPERFAMILY SSF47928 3 106 2.35E-23 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 177 20.57 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 Gene3D G3DSA:1.10.520.20 3 105 3.8E-26 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain TRD_RS05750 8390996e2304a2d6a2cbc0160b97153f 180 PANTHER PTHR11910 1 179 1.4E-51 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 TRD_RS01810 52a9b737edcd382e561c28225b8ee7dc 398 Pfam PF00266 Aminotransferase class-V 30 380 1.6E-62 T 22-04-2016 IPR000192 Aminotransferase class V domain TRD_RS01810 52a9b737edcd382e561c28225b8ee7dc 398 PANTHER PTHR11601 8 397 1.2E-86 T 22-04-2016 TRD_RS01810 52a9b737edcd382e561c28225b8ee7dc 398 Gene3D G3DSA:3.40.640.10 35 280 2.6E-69 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS01810 52a9b737edcd382e561c28225b8ee7dc 398 SUPERFAMILY SSF53383 7 389 5.73E-95 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS01810 52a9b737edcd382e561c28225b8ee7dc 398 Gene3D G3DSA:3.90.1150.10 281 386 8.9E-29 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 SUPERFAMILY SSF58014 47 144 9.81E-20 T 22-04-2016 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 ProSitePatterns PS01071 grpE protein signature. 155 196 - T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 PANTHER PTHR21237 44 201 1.9E-33 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 Pfam PF01025 GrpE 45 196 3.2E-38 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 SUPERFAMILY SSF51064 145 198 2.35E-11 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 70 86 4.6E-20 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 98 113 4.6E-20 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 152 167 4.6E-20 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 PRINTS PR00773 GrpE protein signature 177 196 4.6E-20 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 Gene3D G3DSA:3.90.20.20 46 141 2.7E-21 T 22-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 Hamap MF_01151 Protein GrpE [grpE]. 2 198 17.024 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 TRD_RS07670 a8aa98f89aba58d73d43eeefa7426bcf 218 Gene3D G3DSA:2.30.22.10 144 197 6.0E-16 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 TRD_RS06150 927aa0993c93064cba824478c6acf84f 92 PANTHER PTHR38031 1 91 1.8E-24 T 22-04-2016 TRD_RS06150 927aa0993c93064cba824478c6acf84f 92 SUPERFAMILY SSF54285 1 91 3.2E-24 T 22-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp TRD_RS06150 927aa0993c93064cba824478c6acf84f 92 PANTHER PTHR38031:SF1 1 91 1.8E-24 T 22-04-2016 TRD_RS06150 927aa0993c93064cba824478c6acf84f 92 Gene3D G3DSA:3.10.20.30 3 89 2.9E-31 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS06150 927aa0993c93064cba824478c6acf84f 92 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 12 91 7.5E-15 T 22-04-2016 IPR010038 MoaD, archaeal-type TRD_RS06150 927aa0993c93064cba824478c6acf84f 92 Pfam PF02597 ThiS family 5 91 3.9E-18 T 22-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 SUPERFAMILY SSF53659 4 369 3.06E-115 T 22-04-2016 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 PANTHER PTHR11835:SF35 5 373 1.5E-180 T 22-04-2016 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 SMART SM01329 5 363 8.3E-187 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 367 48.843 T 22-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 362 5.9E-127 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 Gene3D G3DSA:3.40.718.10 4 367 8.4E-123 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 362 2.3E-147 T 22-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 PANTHER PTHR11835 5 373 1.5E-180 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 TRD_RS07930 5a84d6d8f608191faa47198baa1027f3 373 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PANTHER PTHR11902 5 421 1.8E-239 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 ProSitePatterns PS00164 Enolase signature. 336 349 - T 22-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 SMART SM01192 140 427 3.5E-198 T 22-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 SUPERFAMILY SSF54826 5 141 1.85E-54 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 Pfam PF03952 Enolase, N-terminal domain 6 135 3.3E-59 T 22-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 6 425 1.6E-192 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 Gene3D G3DSA:3.20.20.120 129 423 3.7E-120 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 Gene3D G3DSA:3.30.390.10 5 126 3.2E-54 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 422 3.1E-113 T 22-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PIRSF PIRSF001400 2 426 8.8E-180 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 SMART SM01193 6 135 3.0E-92 T 22-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 336 350 1.2E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 365 382 1.2E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 313 324 1.2E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 39 53 1.2E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 108 124 1.2E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 PRINTS PR00148 Enolase signature 163 176 1.2E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 SUPERFAMILY SSF51604 139 425 1.44E-116 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS02930 72e6c260d652e98902c02afe8760e37f 433 Hamap MF_00318 Enolase [eno]. 4 413 44.405 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 SUPERFAMILY SSF103263 3 352 2.62E-143 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 PIRSF PIRSF001456 2 355 2.4E-146 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 PANTHER PTHR21085 1 352 2.5E-204 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 ProSitePatterns PS00787 Chorismate synthase signature 1. 15 30 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 Pfam PF01264 Chorismate synthase 9 348 2.2E-140 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 Hamap MF_00300 Chorismate synthase [aroC]. 9 355 38.261 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 ProSitePatterns PS00788 Chorismate synthase signature 2. 123 139 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 ProSitePatterns PS00789 Chorismate synthase signature 3. 322 338 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 Gene3D G3DSA:3.60.150.10 8 353 1.5E-155 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01125 01a1031a0bb8a2a72f2e82df971dcafd 355 TIGRFAM TIGR00033 aroC: chorismate synthase 9 352 1.6E-143 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 Pfam PF01687 Riboflavin kinase 181 303 9.4E-29 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 Gene3D G3DSA:2.40.30.30 177 306 5.5E-36 T 22-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 PANTHER PTHR22749:SF0 1 305 1.3E-103 T 22-04-2016 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 SMART SM00904 180 305 1.2E-41 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 SUPERFAMILY SSF52374 14 172 3.56E-31 T 22-04-2016 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 Gene3D G3DSA:3.40.50.620 3 176 1.1E-60 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 PANTHER PTHR22749 1 305 1.3E-103 T 22-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 17 304 4.0E-71 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 SUPERFAMILY SSF82114 171 305 4.8E-38 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 Pfam PF06574 FAD synthetase 13 164 1.8E-49 T 22-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 TRD_RS03520 28fbe6749078289c0e0d545b88033ede 334 PIRSF PIRSF004491 1 309 6.5E-93 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 SUPERFAMILY SSF53474 22 258 1.14E-35 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 3.3E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 3.3E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 3.3E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 Gene3D G3DSA:3.40.50.1820 19 255 1.5E-35 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 PANTHER PTHR11614:SF89 5 224 6.1E-17 T 22-04-2016 TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 PANTHER PTHR11614 5 224 6.1E-17 T 22-04-2016 TRD_RS13595 c4ee21fa693455f73eda6f5984936f12 275 Pfam PF12146 Serine aminopeptidase, S33 29 237 1.1E-16 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 SUPERFAMILY SSF46894 147 223 2.86E-25 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 PANTHER PTHR26402:SF151 4 231 3.2E-87 T 22-04-2016 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 PANTHER PTHR26402 4 231 3.2E-87 T 22-04-2016 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 ProSitePatterns PS00622 LuxR-type HTH domain signature. 176 203 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 SMART SM00448 4 117 4.9E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 SUPERFAMILY SSF52172 3 132 1.85E-37 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 Gene3D G3DSA:1.10.10.10 166 222 1.6E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 SMART SM00421 159 216 2.3E-27 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 Pfam PF00072 Response regulator receiver domain 6 117 1.4E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 161 216 1.1E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 192 9.4E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 204 9.4E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 176 9.4E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07810 629abdd6405f890bd0c985ab28deddf6 245 Gene3D G3DSA:3.40.50.2300 1 165 4.5E-44 T 22-04-2016 TRD_RS02020 f889122a27e8d9d3f6d9f1ee061c495d 248 TIGRFAM TIGR00017 cmk: cytidylate kinase 8 224 2.0E-70 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 TRD_RS02020 f889122a27e8d9d3f6d9f1ee061c495d 248 Hamap MF_00238 Cytidylate kinase [cmk]. 8 230 32.675 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 TRD_RS02020 f889122a27e8d9d3f6d9f1ee061c495d 248 SUPERFAMILY SSF52540 8 229 8.43E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02020 f889122a27e8d9d3f6d9f1ee061c495d 248 Pfam PF02224 Cytidylate kinase 10 227 1.6E-71 T 22-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 TRD_RS02020 f889122a27e8d9d3f6d9f1ee061c495d 248 PANTHER PTHR21299 9 238 2.8E-62 T 22-04-2016 TRD_RS02020 f889122a27e8d9d3f6d9f1ee061c495d 248 Gene3D G3DSA:3.40.50.300 8 227 3.0E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00760 1d9d8445306105bb2155b567717bd50b 160 PANTHER PTHR11715 13 147 7.7E-35 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00760 1d9d8445306105bb2155b567717bd50b 160 Gene3D G3DSA:2.40.50.100 19 135 2.7E-26 T 22-04-2016 TRD_RS00760 1d9d8445306105bb2155b567717bd50b 160 SUPERFAMILY SSF51230 20 133 6.75E-26 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS00760 1d9d8445306105bb2155b567717bd50b 160 Pfam PF01597 Glycine cleavage H-protein 21 135 1.3E-29 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00760 1d9d8445306105bb2155b567717bd50b 160 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 16 140 23.082 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00760 1d9d8445306105bb2155b567717bd50b 160 PANTHER PTHR11715:SF13 13 147 7.7E-35 T 22-04-2016 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 18 325 3.8E-52 T 22-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 Gene3D G3DSA:3.40.640.10 18 294 6.0E-83 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 SUPERFAMILY SSF55904 353 502 3.4E-34 T 22-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 SUPERFAMILY SSF53383 18 393 3.29E-77 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 232 246 - T 22-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 426 490 4.9E-13 T 22-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 Gene3D G3DSA:3.90.1150.10 339 396 9.9E-8 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 PANTHER PTHR11751:SF435 18 467 8.5E-81 T 22-04-2016 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 PANTHER PTHR11751 18 467 8.5E-81 T 22-04-2016 TRD_RS07395 e8bdee1fea6d577848cf2076fe664f89 504 Gene3D G3DSA:3.90.100.10 425 502 2.7E-26 T 22-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 302 2.0E-75 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 315 2.7E-125 T 22-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 PANTHER PTHR10366 4 330 2.1E-155 T 22-04-2016 TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 SUPERFAMILY SSF51735 4 327 3.82E-100 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 PANTHER PTHR10366:SF41 4 330 2.1E-155 T 22-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 Gene3D G3DSA:3.40.50.720 3 180 1.9E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01100 e6c7a0517785259bade86a1282aa514f 340 Gene3D G3DSA:3.90.25.10 181 324 1.0E-48 T 22-04-2016 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PANTHER PTHR20854:SF4 1 259 4.9E-102 T 22-04-2016 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 Pfam PF00459 Inositol monophosphatase family 3 251 2.6E-69 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 SUPERFAMILY SSF56655 3 255 1.96E-85 T 22-04-2016 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 208 222 - T 22-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR01959 SuhB family inositol monophosphatase signature 195 207 5.53E-7 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR01959 SuhB family inositol monophosphatase signature 102 121 5.53E-7 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 Gene3D G3DSA:3.30.540.10 3 149 3.3E-50 T 22-04-2016 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 174 195 7.07E-52 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 58 74 7.07E-52 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 205 229 7.07E-52 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 7.07E-52 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 128 151 7.07E-52 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 7.07E-52 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 PANTHER PTHR20854 1 259 4.9E-102 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 22-04-2016 IPR020583 Inositol monophosphatase, metal-binding site TRD_RS00860 b2ce7500e1574130002ce1d5ea51becf 262 Gene3D G3DSA:3.40.190.80 150 256 1.2E-39 T 22-04-2016 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PANTHER PTHR16254 1 132 1.2E-37 T 22-04-2016 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 4.1E-14 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 4.1E-14 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 4.1E-14 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 4.1E-14 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 4.1E-14 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 PANTHER PTHR16254:SF23 1 132 1.2E-37 T 22-04-2016 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 Gene3D G3DSA:3.40.50.720 2 137 8.9E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 Pfam PF02254 TrkA-N domain 3 116 5.0E-27 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 TRD_RS06910 2eb208fc1650361ff5c9acf8f595c7a4 139 SUPERFAMILY SSF51735 2 136 2.96E-30 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 PANTHER PTHR12561 33 357 1.2E-62 T 22-04-2016 TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 Gene3D G3DSA:3.30.390.50 270 350 5.1E-9 T 22-04-2016 TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 SUPERFAMILY SSF82649 269 349 3.87E-5 T 22-04-2016 TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 PANTHER PTHR12561:SF11 33 357 1.2E-62 T 22-04-2016 TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 Gene3D G3DSA:3.90.1550.10 3 247 5.9E-43 T 22-04-2016 TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 SUPERFAMILY SSF55681 3 249 1.85E-53 T 22-04-2016 TRD_RS00685 be7dd78a4cc979d5e7d39767678ab7a4 357 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 269 347 6.0E-5 T 22-04-2016 IPR019491 Lipoate protein ligase, C-terminal UniPathway: UPA00537|UniPathway: UPA00537 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PANTHER PTHR11963 41 494 1.2E-164 T 22-04-2016 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 Gene3D G3DSA:3.40.220.10 7 154 4.3E-17 T 22-04-2016 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 21 143 1.3E-13 T 22-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 Gene3D G3DSA:3.40.630.10 163 489 1.4E-121 T 22-04-2016 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 SUPERFAMILY SSF53187 174 486 2.79E-110 T 22-04-2016 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PANTHER PTHR11963:SF13 41 494 1.2E-164 T 22-04-2016 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 178 482 1.1E-111 T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 SUPERFAMILY SSF52949 17 176 8.24E-17 T 22-04-2016 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 4 491 34.854 T 22-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 339 346 - T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 363 378 4.5E-49 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 313 334 4.5E-49 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 335 355 4.5E-49 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 276 297 4.5E-49 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 TRD_RS02370 f5b28759d48522d4fb4454b975ce301f 497 PRINTS PR00481 Cytosol aminopeptidase signature 254 271 4.5E-49 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 TRD_RS08850 05b700db82984f4ae9eee02043ebd7dd 346 Pfam PF13579 Glycosyl transferase 4-like domain 19 126 1.0E-7 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS08850 05b700db82984f4ae9eee02043ebd7dd 346 Pfam PF00534 Glycosyl transferases group 1 163 317 7.9E-26 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS08850 05b700db82984f4ae9eee02043ebd7dd 346 PANTHER PTHR12526 1 344 2.4E-48 T 22-04-2016 TRD_RS08850 05b700db82984f4ae9eee02043ebd7dd 346 Gene3D G3DSA:3.40.50.2000 170 313 8.0E-20 T 22-04-2016 TRD_RS08850 05b700db82984f4ae9eee02043ebd7dd 346 SUPERFAMILY SSF53756 10 344 2.16E-65 T 22-04-2016 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 SMART SM00642 162 526 1.1E-7 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 542 640 1.3E-26 T 22-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 PIRSF PIRSF000463 6 646 2.7E-281 T 22-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 12 641 44.768 T 22-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 SUPERFAMILY SSF51445 83 530 1.01E-113 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 SUPERFAMILY SSF81296 26 135 2.57E-24 T 22-04-2016 IPR014756 Immunoglobulin E-set TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Gene3D G3DSA:2.60.40.10 24 134 7.7E-35 T 22-04-2016 IPR013783 Immunoglobulin-like fold TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 SUPERFAMILY SSF51011 537 640 1.73E-38 T 22-04-2016 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 PANTHER PTHR10357 15 640 0.0 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Pfam PF00128 Alpha amylase, catalytic domain 191 261 1.1E-9 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 PANTHER PTHR10357:SF160 15 640 0.0 T 22-04-2016 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 35 119 4.9E-21 T 22-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 20 638 3.1E-278 T 22-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Gene3D G3DSA:3.20.20.80 157 523 1.4E-90 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS09030 cdf3e432f7bfed85c5dc1163146ec034 647 Gene3D G3DSA:2.60.40.1180 537 640 2.0E-41 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 PANTHER PTHR23105 21 238 2.0E-76 T 22-04-2016 TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 Gene3D G3DSA:3.30.190.20 18 68 1.1E-43 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 Gene3D G3DSA:3.30.190.20 164 229 1.1E-43 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 232 39.485 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 PIRSF PIRSF002155 1 230 6.4E-67 T 22-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 PANTHER PTHR23105:SF5 21 238 2.0E-76 T 22-04-2016 TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 Gene3D G3DSA:3.40.50.790 69 162 1.3E-33 T 22-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 22-04-2016 IPR023673 Ribosomal protein L1, conserved site TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 SUPERFAMILY SSF56808 6 229 5.62E-73 T 22-04-2016 IPR023674 Ribosomal protein L1-like TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 Pfam PF00687 Ribosomal protein L1p/L10e family 31 223 7.3E-45 T 22-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein TRD_RS03125 8071ce5f1f13c20022ae908357aa7db0 241 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 230 1.8E-90 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 TRD_RS02835 62e677666925b18eadbf8bf7a4cfa07d 102 PANTHER PTHR13420 17 95 4.1E-13 T 22-04-2016 TRD_RS02835 62e677666925b18eadbf8bf7a4cfa07d 102 SMART SM01152 9 85 1.7E-28 T 22-04-2016 IPR003746 Protein of unknown function DUF167 TRD_RS02835 62e677666925b18eadbf8bf7a4cfa07d 102 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 15 83 6.2E-22 T 22-04-2016 IPR003746 Protein of unknown function DUF167 TRD_RS02835 62e677666925b18eadbf8bf7a4cfa07d 102 SUPERFAMILY SSF69786 6 95 3.4E-23 T 22-04-2016 IPR003746 Protein of unknown function DUF167 TRD_RS02835 62e677666925b18eadbf8bf7a4cfa07d 102 Gene3D G3DSA:3.30.1200.10 12 97 5.0E-24 T 22-04-2016 IPR003746 Protein of unknown function DUF167 TRD_RS02835 62e677666925b18eadbf8bf7a4cfa07d 102 Hamap MF_00634 UPF0235 protein YggU [yggU]. 9 97 19.426 T 22-04-2016 IPR003746 Protein of unknown function DUF167 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 12 824 23.018 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:3.90.740.10 229 432 3.1E-60 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF09334 tRNA synthetases class I (M) 50 193 1.4E-23 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF08264 Anticodon-binding domain of tRNA 665 786 4.7E-22 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 428 618 3.5E-25 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:3.40.50.620 433 619 1.0E-152 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:3.40.50.620 10 228 1.0E-152 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Gene3D G3DSA:1.10.730.10 620 759 4.8E-41 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946 246 271 0.0 T 22-04-2016 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946 294 467 0.0 T 22-04-2016 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946 1 215 0.0 T 22-04-2016 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946 483 829 0.0 T 22-04-2016 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF52374 12 233 9.81E-149 T 22-04-2016 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF52374 427 636 9.81E-149 T 22-04-2016 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 228 414 3.3E-71 T 22-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF50677 234 426 5.65E-53 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 13 824 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 499 517 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 194 207 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 538 560 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 162 178 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 136 153 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 571 581 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 222 241 3.8E-49 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946:SF7 246 271 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946:SF7 294 467 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946:SF7 1 215 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 PANTHER PTHR11946:SF7 483 829 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 TRD_RS05790 ba9fa8a7a0cca18d195c86ce04cc5ce8 829 SUPERFAMILY SSF47323 632 825 1.74E-39 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07770 9acc31e94098fd858528b71b2f6fc926 273 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 14 242 5.1E-21 T 22-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 TRD_RS07770 9acc31e94098fd858528b71b2f6fc926 273 PANTHER PTHR23344 8 252 5.6E-31 T 22-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 TRD_RS07770 9acc31e94098fd858528b71b2f6fc926 273 SUPERFAMILY SSF51695 9 248 1.62E-45 T 22-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 TRD_RS07770 9acc31e94098fd858528b71b2f6fc926 273 PANTHER PTHR23344:SF28 8 252 5.6E-31 T 22-04-2016 TRD_RS07770 9acc31e94098fd858528b71b2f6fc926 273 Gene3D G3DSA:3.20.20.190 7 252 1.1E-42 T 22-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 TRD_RS01725 2ee5aefc5d3766d07aea5ec7dfe2b37c 164 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 140 157 - T 22-04-2016 IPR028871 Blue (type 1) copper protein, binding site TRD_RS01725 2ee5aefc5d3766d07aea5ec7dfe2b37c 164 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 81 161 0.003 T 22-04-2016 TRD_RS01725 2ee5aefc5d3766d07aea5ec7dfe2b37c 164 Gene3D G3DSA:2.60.40.420 80 164 9.4E-23 T 22-04-2016 IPR008972 Cupredoxin TRD_RS01725 2ee5aefc5d3766d07aea5ec7dfe2b37c 164 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 74 164 8.4E-9 T 22-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 TRD_RS01725 2ee5aefc5d3766d07aea5ec7dfe2b37c 164 SUPERFAMILY SSF49503 48 163 5.75E-23 T 22-04-2016 IPR008972 Cupredoxin TRD_RS01725 2ee5aefc5d3766d07aea5ec7dfe2b37c 164 PANTHER PTHR38439 8 164 4.8E-13 T 22-04-2016 TRD_RS05090 cf005696f8faee04b829ac34de8e506a 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 67 2.0E-13 T 22-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain TRD_RS05090 cf005696f8faee04b829ac34de8e506a 97 Gene3D G3DSA:3.30.70.900 7 66 8.5E-12 T 22-04-2016 TRD_RS05090 cf005696f8faee04b829ac34de8e506a 97 SUPERFAMILY SSF54909 1 66 9.97E-14 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 PANTHER PTHR33490 566 915 2.4E-28 T 22-04-2016 TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 PANTHER PTHR33490 29 407 2.4E-28 T 22-04-2016 TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 Pfam PF13559 Domain of unknown function (DUF4129) 812 881 3.3E-8 T 22-04-2016 IPR025403 Domain of unknown function DUF4129 TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 Gene3D G3DSA:3.90.260.10 563 716 8.4E-24 T 22-04-2016 IPR002931 Transglutaminase-like TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 Pfam PF01841 Transglutaminase-like superfamily 596 712 7.2E-28 T 22-04-2016 IPR002931 Transglutaminase-like TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 SMART SM00460 643 714 4.3E-21 T 22-04-2016 IPR002931 Transglutaminase-like TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 PANTHER PTHR33490:SF4 566 915 2.4E-28 T 22-04-2016 TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 PANTHER PTHR33490:SF4 29 407 2.4E-28 T 22-04-2016 TRD_RS03225 1c0b2836627de16e4753ba6740c685d6 917 SUPERFAMILY SSF54001 570 818 4.35E-40 T 22-04-2016 TRD_RS08985 b46966f6a818038a1bdddfdd3eb01d08 96 Gene3D G3DSA:3.30.1070.10 37 87 1.1E-11 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 TRD_RS08985 b46966f6a818038a1bdddfdd3eb01d08 96 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 7 86 3.4E-14 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 TRD_RS08985 b46966f6a818038a1bdddfdd3eb01d08 96 Pfam PF03776 Septum formation topological specificity factor MinE 19 85 1.5E-15 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 TRD_RS08985 b46966f6a818038a1bdddfdd3eb01d08 96 SUPERFAMILY SSF55229 37 86 3.14E-7 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PIRSF PIRSF000676 1 298 3.2E-78 T 22-04-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 Hamap MF_00384 Homoserine kinase [thrB]. 3 295 30.749 T 22-04-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 SUPERFAMILY SSF55060 159 274 2.34E-29 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 Pfam PF00288 GHMP kinases N terminal domain 77 137 4.3E-15 T 22-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 SUPERFAMILY SSF54211 5 142 5.09E-31 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PANTHER PTHR20861:SF1 4 302 1.4E-79 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 Gene3D G3DSA:3.30.70.890 159 279 1.6E-35 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 Gene3D G3DSA:3.30.230.10 3 146 4.5E-44 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 83 94 - T 22-04-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PANTHER PTHR20861 4 302 1.4E-79 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 TIGRFAM TIGR00191 thrB: homoserine kinase 4 296 2.1E-75 T 22-04-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 163 180 4.4E-35 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 10 25 4.4E-35 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 90 105 4.4E-35 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 242 257 4.4E-35 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 PRINTS PR00958 Homoserine kinase signature 124 137 4.4E-35 T 22-04-2016 TRD_RS05845 d87b2a3f8d91744c45c4b626b184e349 315 Pfam PF08544 GHMP kinases C terminal 201 272 7.9E-14 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 PANTHER PTHR21294:SF0 1 254 3.0E-66 T 22-04-2016 TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 PANTHER PTHR21294 1 254 3.0E-66 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 Gene3D G3DSA:3.40.50.620 2 251 3.7E-67 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 SMART SM00893 24 207 1.9E-41 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 Pfam PF01012 Electron transfer flavoprotein domain 31 202 6.3E-38 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 SUPERFAMILY SSF52402 2 244 6.84E-57 T 22-04-2016 TRD_RS00200 69f244722d56c1fd0c357afb1d6c4899 254 PIRSF PIRSF000090 1 253 1.7E-58 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 Gene3D G3DSA:3.40.710.10 302 736 4.7E-104 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 PANTHER PTHR32282 149 806 2.2E-181 T 22-04-2016 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 PANTHER PTHR32282 24 133 2.2E-181 T 22-04-2016 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 Pfam PF00912 Transglycosylase 144 299 2.3E-54 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 Gene3D G3DSA:1.10.3810.10 144 301 1.9E-62 T 22-04-2016 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 SUPERFAMILY SSF53955 142 322 3.37E-63 T 22-04-2016 IPR023346 Lysozyme-like domain TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 Pfam PF00905 Penicillin binding protein transpeptidase domain 388 657 9.9E-22 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 PANTHER PTHR32282:SF5 149 806 2.2E-181 T 22-04-2016 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 PANTHER PTHR32282:SF5 24 133 2.2E-181 T 22-04-2016 TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 SUPERFAMILY SSF56601 281 303 5.23E-104 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS09190 02c096b2cac285ceb7ed15b085fa1633 842 SUPERFAMILY SSF56601 331 740 5.23E-104 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF140490 462 563 7.85E-33 T 22-04-2016 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 479 490 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 Gene3D G3DSA:3.40.30.10 34 111 2.1E-5 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 PANTHER PTHR11780:SF0 29 562 1.1E-209 T 22-04-2016 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF52833 30 111 1.68E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 468 551 1.6E-25 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 185 356 4.5E-41 T 22-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 PANTHER PTHR11780 29 562 1.1E-209 T 22-04-2016 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF142984 378 461 3.27E-15 T 22-04-2016 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 SUPERFAMILY SSF142019 136 377 5.49E-80 T 22-04-2016 TRD_RS03630 39dd6dc43babb01d7a6efd97feece053 574 SMART SM00928 466 511 7.4E-20 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 SUPERFAMILY SSF51556 200 488 2.13E-34 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 SUPERFAMILY SSF51556 61 124 2.13E-34 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 PANTHER PTHR22642:SF2 2 530 2.9E-177 T 22-04-2016 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 SUPERFAMILY SSF51338 1 62 1.4E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 SUPERFAMILY SSF51338 487 531 1.4E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 Gene3D G3DSA:3.20.20.140 202 469 4.1E-35 T 22-04-2016 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 PANTHER PTHR22642 2 530 2.9E-177 T 22-04-2016 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 Gene3D G3DSA:2.30.40.10 1 135 1.1E-15 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 Pfam PF07969 Amidohydrolase family 50 528 1.3E-119 T 22-04-2016 IPR013108 Amidohydrolase 3 TRD_RS01800 5c96050eca3afc26d6a2be1116e2f6eb 534 Gene3D G3DSA:2.30.40.10 470 529 1.8E-7 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 Gene3D G3DSA:3.20.10.10 138 295 3.2E-49 T 22-04-2016 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 2.3E-84 T 22-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 PANTHER PTHR11825:SF52 8 306 9.4E-88 T 22-04-2016 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 SUPERFAMILY SSF56752 7 303 5.62E-76 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 Gene3D G3DSA:3.30.470.10 6 113 9.9E-27 T 22-04-2016 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 PANTHER PTHR11825 8 306 9.4E-88 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS07525 3c9ca3fa16fd43fe6c590ea04030c297 320 Pfam PF01063 Amino-transferase class IV 35 268 9.3E-42 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 PANTHER PTHR33154 35 130 6.0E-24 T 22-04-2016 TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 SUPERFAMILY SSF46785 32 117 7.58E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 4.125342E-13 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 89 104 4.125342E-13 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 74 89 4.125342E-13 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 Pfam PF01022 Bacterial regulatory protein, arsR family 46 92 1.4E-14 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 Gene3D G3DSA:1.10.10.10 29 119 3.8E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06930 bd0849f1145445bf97623ca01fa5eb29 141 SMART SM00418 39 118 1.8E-27 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS04225 487af021872a689038cc417516cd55d9 365 Pfam PF01008 Initiation factor 2 subunit family 50 335 2.7E-76 T 22-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 TRD_RS04225 487af021872a689038cc417516cd55d9 365 PANTHER PTHR10233:SF6 7 354 5.4E-140 T 22-04-2016 TRD_RS04225 487af021872a689038cc417516cd55d9 365 PANTHER PTHR10233 7 354 5.4E-140 T 22-04-2016 TRD_RS04225 487af021872a689038cc417516cd55d9 365 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 35 335 1.9E-102 T 22-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 TRD_RS04225 487af021872a689038cc417516cd55d9 365 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 346 36.689 T 22-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 TRD_RS04225 487af021872a689038cc417516cd55d9 365 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 10 334 4.4E-120 T 22-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 TRD_RS04225 487af021872a689038cc417516cd55d9 365 Gene3D G3DSA:1.20.120.420 9 157 7.2E-40 T 22-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 TRD_RS04225 487af021872a689038cc417516cd55d9 365 Gene3D G3DSA:3.40.50.10470 158 341 2.2E-67 T 22-04-2016 TRD_RS04225 487af021872a689038cc417516cd55d9 365 SUPERFAMILY SSF100950 8 338 1.05E-110 T 22-04-2016 TRD_RS02230 8d4f707bfc1669818f5220f63169dff8 463 PIRSF PIRSF000204 1 462 2.0E-175 T 22-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 TRD_RS02230 8d4f707bfc1669818f5220f63169dff8 463 SUPERFAMILY SSF52467 289 461 2.38E-71 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS02230 8d4f707bfc1669818f5220f63169dff8 463 PANTHER PTHR10160 5 463 9.1E-208 T 22-04-2016 TRD_RS02230 8d4f707bfc1669818f5220f63169dff8 463 Gene3D G3DSA:3.40.50.1220 287 461 4.2E-85 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS02230 8d4f707bfc1669818f5220f63169dff8 463 PANTHER PTHR10160:SF24 5 463 9.1E-208 T 22-04-2016 TRD_RS02230 8d4f707bfc1669818f5220f63169dff8 463 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 458 1.9E-178 T 22-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 SUPERFAMILY SSF53067 2 122 1.62E-29 T 22-04-2016 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 Gene3D G3DSA:3.30.420.40 95 254 7.2E-46 T 22-04-2016 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 PANTHER PTHR34265 1 252 1.6E-66 T 22-04-2016 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 Gene3D G3DSA:3.30.420.40 2 64 8.1E-4 T 22-04-2016 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 Pfam PF03309 Type III pantothenate kinase 2 206 5.5E-62 T 22-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 SUPERFAMILY SSF53067 124 251 8.03E-35 T 22-04-2016 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 249 1.9E-66 T 22-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 TRD_RS04905 e05305e82f9925d3f911720ed7e8b0f8 259 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 32.492 T 22-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 PANTHER PTHR11632 199 552 1.4E-196 T 22-04-2016 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 PANTHER PTHR11632 5 134 1.4E-196 T 22-04-2016 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 SUPERFAMILY SSF51905 492 552 2.83E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 SUPERFAMILY SSF51905 214 318 2.83E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 SUPERFAMILY SSF51905 3 148 2.83E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 Gene3D G3DSA:3.90.700.10 319 485 1.6E-32 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 SUPERFAMILY SSF56425 314 487 3.84E-36 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 3.5E-5 T 22-04-2016 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 509 524 3.5E-5 T 22-04-2016 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 Gene3D G3DSA:3.50.50.60 4 143 4.5E-65 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 Gene3D G3DSA:3.50.50.60 489 551 4.5E-65 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 Gene3D G3DSA:3.50.50.60 205 312 4.5E-65 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 PANTHER PTHR11632:SF59 199 552 1.4E-196 T 22-04-2016 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 PANTHER PTHR11632:SF59 5 134 1.4E-196 T 22-04-2016 TRD_RS08430 be47a473303273b10a373c7f10d868f5 560 Pfam PF00890 FAD binding domain 9 534 7.1E-96 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 321 2.1E-40 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 PANTHER PTHR32347 3 323 1.5E-28 T 22-04-2016 TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 Gene3D G3DSA:2.40.50.100 143 179 6.9E-10 T 22-04-2016 TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 Gene3D G3DSA:2.40.50.100 61 89 6.9E-10 T 22-04-2016 TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 256 3.2E-15 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 PANTHER PTHR32347:SF16 3 323 1.5E-28 T 22-04-2016 TRD_RS01065 01ac97f1bd8cbe8d13f043009865e39e 326 SUPERFAMILY SSF111369 45 260 8.63E-13 T 22-04-2016 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 SUPERFAMILY SSF102735 2 129 3.66E-29 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 SUPERFAMILY SSF109998 249 424 1.57E-35 T 22-04-2016 IPR027304 Trigger factor/SurA domain TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 Gene3D G3DSA:3.30.70.1050 2 115 2.0E-28 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 TIGRFAM TIGR00115 tig: trigger factor 12 419 7.8E-103 T 22-04-2016 IPR005215 Trigger factor GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 261 421 1.8E-34 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 SUPERFAMILY SSF54534 130 248 2.16E-15 T 22-04-2016 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 PIRSF PIRSF003095 1 432 1.1E-99 T 22-04-2016 IPR005215 Trigger factor GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 Hamap MF_00303 Trigger factor [tig]. 1 431 18.695 T 22-04-2016 IPR005215 Trigger factor GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 PANTHER PTHR30560 1 437 3.0E-80 T 22-04-2016 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 Gene3D G3DSA:1.10.3120.10 206 394 1.4E-47 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 TRD_RS05610 64956a9a3c6633698fa9c065c43e23ec 490 Pfam PF05697 Bacterial trigger factor protein (TF) 2 141 2.5E-37 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 PANTHER PTHR23135:SF4 10 499 9.7E-163 T 22-04-2016 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Gene3D G3DSA:3.90.190.20 343 488 3.2E-43 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 496 31.097 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Pfam PF08245 Mur ligase middle domain 110 317 1.3E-45 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 SUPERFAMILY SSF63418 7 101 2.75E-22 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 496 2.0E-143 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Gene3D G3DSA:3.40.1390.10 15 100 4.0E-24 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Gene3D G3DSA:3.40.1190.10 102 342 6.6E-72 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 425 9.2E-18 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 PANTHER PTHR23135 10 499 9.7E-163 T 22-04-2016 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 SUPERFAMILY SSF53623 101 336 4.97E-63 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 SUPERFAMILY SSF53244 339 499 7.2E-39 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS04275 9693eb6e9b7102fbabdb5f4fcf0e003d 505 Pfam PF01225 Mur ligase family, catalytic domain 23 98 5.1E-9 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 SUPERFAMILY SSF55186 95 241 1.57E-38 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 SUPERFAMILY SSF50447 1 87 3.18E-14 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 193 236 6.3E-9 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 Pfam PF01411 tRNA synthetases class II (A) 16 95 9.0E-10 T 22-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 PANTHER PTHR11777 1 249 6.0E-84 T 22-04-2016 TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 PANTHER PTHR11777:SF17 1 249 6.0E-84 T 22-04-2016 TRD_RS08375 6041bcd07d7db569e882b1d798321cb6 251 SMART SM00863 193 236 2.6E-11 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 PANTHER PTHR11761 1 122 1.2E-76 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 22-04-2016 IPR019972 Ribosomal protein L14P, conserved site TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 121 3.7E-56 T 22-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 Gene3D G3DSA:2.40.150.20 1 121 1.1E-53 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 121 1.9E-54 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 SMART SM01374 1 122 4.6E-88 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 SUPERFAMILY SSF50193 1 121 4.71E-52 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 TRD_RS04475 0871690daa26d9a819a7670aac58fd55 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.686 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 Hamap MF_01217 Acyl carrier protein [acpP]. 4 78 22.575 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 Gene3D G3DSA:1.10.1200.10 4 78 3.3E-33 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 PANTHER PTHR20863 5 77 4.5E-29 T 22-04-2016 TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 3 77 1.6E-33 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 Pfam PF00550 Phosphopantetheine attachment site 7 74 2.1E-16 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 SMART SM00823 Phosphopantetheine attachment site 6 78 5.4E-4 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 ProSitePatterns PS00012 Phosphopantetheine attachment site. 33 48 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site TRD_RS07565 184d8dc035ac23ca95344829e19dad95 81 SUPERFAMILY SSF47336 4 79 1.11E-25 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain TRD_RS08450 f36b84bc8870ef668061145c318621b1 355 PANTHER PTHR11091:SF0 5 352 3.2E-127 T 22-04-2016 TRD_RS08450 f36b84bc8870ef668061145c318621b1 355 Pfam PF02615 Malate/L-lactate dehydrogenase 8 342 1.9E-121 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS08450 f36b84bc8870ef668061145c318621b1 355 Gene3D G3DSA:1.10.1530.10 6 75 5.1E-26 T 22-04-2016 TRD_RS08450 f36b84bc8870ef668061145c318621b1 355 SUPERFAMILY SSF89733 5 352 8.24E-112 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS08450 f36b84bc8870ef668061145c318621b1 355 PANTHER PTHR11091 5 352 3.2E-127 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS08450 f36b84bc8870ef668061145c318621b1 355 Gene3D G3DSA:3.30.1370.60 76 282 1.6E-76 T 22-04-2016 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 Gene3D G3DSA:1.10.287.990 20 89 2.5E-30 T 22-04-2016 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 1.0E-30 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PANTHER PTHR11404 1 205 4.3E-113 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PIRSF PIRSF000349 1 205 4.0E-86 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.4E-26 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 4.4E-26 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.4E-26 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 4.4E-26 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 4.4E-26 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 SUPERFAMILY SSF54719 90 201 1.31E-48 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 2.3E-44 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 SUPERFAMILY SSF46609 1 91 2.75E-36 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS01445 52b3fe2b93370ab8786893fe48e29f1d 205 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 22-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 3 60 20.354 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 PIRSF PIRSF002211 1 62 5.3E-29 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 ProSitePatterns PS00634 Ribosomal protein L30 signature. 24 56 - T 22-04-2016 IPR018038 Ribosomal protein L30, conserved site TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 Pfam PF00327 Ribosomal protein L30p/L7e 6 56 8.3E-19 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 60 2.9E-26 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 PANTHER PTHR15892:SF2 2 62 5.7E-26 T 22-04-2016 TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 SUPERFAMILY SSF55129 4 61 4.45E-22 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 PANTHER PTHR15892 2 62 5.7E-26 T 22-04-2016 TRD_RS04440 4204a1ae0c6aef909aafe329305f5a9e 67 Gene3D G3DSA:3.30.1390.20 4 60 1.4E-28 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 23 571 2.9E-198 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF52374 349 581 2.03E-140 T 22-04-2016 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF52374 12 197 2.03E-140 T 22-04-2016 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:1.10.287.380 820 890 7.8E-11 T 22-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 827 891 2.9E-18 T 22-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:3.90.740.10 202 344 5.7E-48 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:1.10.730.10 571 757 5.2E-65 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PANTHER PTHR11946:SF5 1 800 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PANTHER PTHR11946:SF5 823 885 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF47323 583 842 2.24E-64 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:3.40.50.620 13 201 4.1E-141 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Gene3D G3DSA:3.40.50.620 348 569 4.1E-141 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 TIGRFAM TIGR00422 valS: valine--tRNA ligase 12 874 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF50677 198 348 1.44E-57 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Hamap MF_02004 Valine--tRNA ligase [valS]. 10 892 15.668 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 51 62 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 SUPERFAMILY SSF46589 827 891 1.73E-13 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 Pfam PF08264 Anticodon-binding domain of tRNA 621 762 5.2E-44 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PANTHER PTHR11946 1 800 0.0 T 22-04-2016 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PANTHER PTHR11946 823 885 0.0 T 22-04-2016 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 44 55 4.0E-39 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 353 366 4.0E-39 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 238 255 4.0E-39 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 483 501 4.0E-39 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS07065 fe0f9facb0b6420b9f2005c7c4377e90 892 PRINTS PR00986 Valyl-tRNA synthetase signature 452 473 4.0E-39 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 PANTHER PTHR30562:SF1 4 610 1.1E-264 T 22-04-2016 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Gene3D G3DSA:4.10.860.10 185 246 1.7E-18 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 SUPERFAMILY SSF82771 19 103 1.16E-21 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Pfam PF14520 Helix-hairpin-helix domain 559 611 9.8E-13 T 22-04-2016 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 SMART SM00278 558 577 14.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 SMART SM00278 590 609 1.1 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Gene3D G3DSA:3.40.1440.10 20 98 3.6E-11 T 22-04-2016 IPR027299 GIY-YIG domain TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 SUPERFAMILY SSF46600 193 245 1.83E-13 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Hamap MF_00203 UvrABC system protein C [uvrC]. 6 609 29.985 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Gene3D G3DSA:1.10.150.20 558 610 1.3E-23 T 22-04-2016 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Pfam PF02151 UvrB/uvrC motif 207 239 9.6E-10 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 591 1.5E-177 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 391 544 7.5E-54 T 22-04-2016 IPR001162 UvrC family homology region TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 PANTHER PTHR30562 4 610 1.1E-264 T 22-04-2016 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 SMART SM00465 19 101 2.1E-22 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 SUPERFAMILY SSF47781 522 612 1.18E-24 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 TRD_RS01965 db36348f0555a8ad02547dfae19b8bd5 617 Pfam PF01541 GIY-YIG catalytic domain 21 95 8.9E-10 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 Gene3D G3DSA:3.20.19.10 5 160 3.7E-37 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 PANTHER PTHR11670 1 164 5.1E-76 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 Pfam PF00694 Aconitase C-terminal domain 36 100 1.1E-20 T 22-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 1 161 41.32 T 22-04-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 3 158 1.1E-68 T 22-04-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 SUPERFAMILY SSF52016 2 163 7.85E-55 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 PANTHER PTHR11670:SF41 1 164 5.1E-76 T 22-04-2016 TRD_RS07925 dd35d21c8678313379f5773fa6f7ffe1 170 TIGRFAM TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit 3 158 2.3E-77 T 22-04-2016 IPR011824 Hydrolyase LeuD/DmdB, bacterial GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 PANTHER PTHR34858 72 148 1.9E-27 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 PANTHER PTHR34858 1 46 1.9E-27 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 SUPERFAMILY SSF102712 1 43 2.22E-30 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 SUPERFAMILY SSF102712 79 154 2.22E-30 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 SMART SM00232 1 149 9.6E-5 T 22-04-2016 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 PANTHER PTHR34858:SF1 72 148 1.9E-27 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 PANTHER PTHR34858:SF1 1 46 1.9E-27 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 Gene3D G3DSA:3.40.140.10 79 156 3.7E-42 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 Gene3D G3DSA:3.40.140.10 1 43 3.7E-42 T 22-04-2016 TRD_RS06145 fe6d83934dfb71c242ec30905f489f60 160 Pfam PF14464 Prokaryotic homologs of the JAB domain 7 133 1.3E-22 T 22-04-2016 IPR028090 JAB domain, prokaryotic TRD_RS01035 71e072d3b363498016efaf57963c4570 463 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 16 436 4.1E-125 T 22-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 ProSitePatterns PS00483 Dihydroorotase signature 2. 316 327 - T 22-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 PANTHER PTHR11647:SF70 1 436 3.8E-164 T 22-04-2016 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 ProSitePatterns PS00482 Dihydroorotase signature 1. 56 64 - T 22-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 Pfam PF01979 Amidohydrolase family 49 432 3.0E-31 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 PANTHER PTHR11647 1 436 3.8E-164 T 22-04-2016 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 Gene3D G3DSA:3.20.20.140 68 418 5.5E-104 T 22-04-2016 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 Gene3D G3DSA:2.30.40.10 1 67 9.1E-21 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 Hamap MF_00220_B Dihydroorotase [pyrC]. 1 437 40.803 T 22-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 SUPERFAMILY SSF51556 53 379 4.2E-97 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS01035 71e072d3b363498016efaf57963c4570 463 SUPERFAMILY SSF51338 379 439 6.43E-29 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01035 71e072d3b363498016efaf57963c4570 463 SUPERFAMILY SSF51338 1 52 6.43E-29 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01840 7feb9ee1bb44fbded7476293a465f67d 269 Hamap MF_00443 Thiazole synthase [thiG]. 16 269 45.268 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 TRD_RS01840 7feb9ee1bb44fbded7476293a465f67d 269 PANTHER PTHR34266 11 268 4.0E-160 T 22-04-2016 TRD_RS01840 7feb9ee1bb44fbded7476293a465f67d 269 Gene3D G3DSA:3.20.20.70 16 266 2.9E-65 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS01840 7feb9ee1bb44fbded7476293a465f67d 269 SUPERFAMILY SSF110399 16 255 1.23E-88 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 TRD_RS01840 7feb9ee1bb44fbded7476293a465f67d 269 Pfam PF05690 Thiazole biosynthesis protein ThiG 18 263 5.2E-113 T 22-04-2016 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 SUPERFAMILY SSF54675 7 115 5.49E-30 T 22-04-2016 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 PIRSF PIRSF006250 10 285 2.9E-96 T 22-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 SUPERFAMILY SSF51690 116 282 2.75E-64 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 116 281 1.9E-66 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 Gene3D G3DSA:3.20.20.70 137 272 4.5E-64 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 Gene3D G3DSA:3.90.1170.20 12 136 1.2E-48 T 22-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 26 114 6.3E-25 T 22-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 PANTHER PTHR32179 6 284 2.2E-130 T 22-04-2016 TRD_RS02720 3f192beb1ac422cfc3561f72e39420d3 288 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 17 282 3.6E-104 T 22-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 PANTHER PTHR33449:SF1 1 93 9.3E-33 T 22-04-2016 TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 89 18.323 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 SUPERFAMILY SSF82607 1 93 7.59E-28 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 83 3.1E-24 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 PIRSF PIRSF004555 1 97 4.6E-30 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 Gene3D G3DSA:3.30.1310.10 1 93 5.8E-34 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 Pfam PF02575 YbaB/EbfC DNA-binding family 1 90 3.3E-30 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family TRD_RS02120 3263104b0996f3fce09b3342ad0644bf 97 PANTHER PTHR33449 1 93 9.3E-33 T 22-04-2016 TRD_RS01105 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 30 217 5.5E-22 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS01105 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 SUPERFAMILY SSF81606 17 217 1.24E-7 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS01105 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 SMART SM00331 4 217 5.9E-6 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS01105 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 Gene3D G3DSA:3.60.40.10 132 216 3.0E-6 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS01105 51a6d44e04b0bc80c58a8d6dc8cef1a2 237 PANTHER PTHR35801 5 223 3.9E-22 T 22-04-2016 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 178 2.8E-22 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 ProSitePatterns PS00622 LuxR-type HTH domain signature. 147 174 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 PANTHER PTHR30173 1 183 2.1E-33 T 22-04-2016 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 Pfam PF04542 Sigma-70 region 2 28 95 6.9E-18 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 Pfam PF08281 Sigma-70, region 4 125 174 1.5E-9 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 SUPERFAMILY SSF88946 5 103 1.44E-26 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 SUPERFAMILY SSF88659 107 180 1.64E-10 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 Gene3D G3DSA:1.10.1740.10 6 103 6.9E-28 T 22-04-2016 TRD_RS07010 373872aa7d392d36398b0e91807392fd 192 Gene3D G3DSA:1.10.10.10 118 179 2.4E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 Gene3D G3DSA:1.10.10.10 114 177 2.3E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 PANTHER PTHR30173:SF24 1 177 1.5E-50 T 22-04-2016 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 Pfam PF04542 Sigma-70 region 2 25 91 1.6E-18 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 PANTHER PTHR30173 1 177 1.5E-50 T 22-04-2016 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 175 3.0E-31 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 ProSitePatterns PS00622 LuxR-type HTH domain signature. 144 171 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 SUPERFAMILY SSF88659 115 177 1.18E-18 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 Pfam PF08281 Sigma-70, region 4 119 172 1.2E-19 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 77 - T 22-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 Gene3D G3DSA:1.10.1740.10 4 112 9.5E-34 T 22-04-2016 TRD_RS08205 dd61755959fcba6d6792bbb1c9847614 185 SUPERFAMILY SSF88946 2 108 1.6E-30 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03040 e70663306d55629eabf9b097f0cd9d88 249 Pfam PF13197 Protein of unknown function (DUF4013) 35 191 1.4E-17 T 22-04-2016 IPR025098 Protein of unknown function DUF4013 TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 SUPERFAMILY SSF89796 4 396 4.06E-158 T 22-04-2016 IPR023606 CoA-transferase family III domain TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 PANTHER PTHR24023:SF593 37 383 8.4E-49 T 22-04-2016 TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 PANTHER PTHR24023 37 383 8.4E-49 T 22-04-2016 TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 Gene3D G3DSA:3.30.1540.10 223 305 6.7E-34 T 22-04-2016 TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 Pfam PF02515 CoA-transferase family III 6 373 6.9E-144 T 22-04-2016 IPR003673 CoA-transferase family III GO:0003824 TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 Gene3D G3DSA:3.40.50.10540 3 217 4.6E-133 T 22-04-2016 IPR023606 CoA-transferase family III domain TRD_RS06410 6663ff984266a5fab6c94927694d8817 396 Gene3D G3DSA:3.40.50.10540 306 396 4.6E-133 T 22-04-2016 IPR023606 CoA-transferase family III domain TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 PANTHER PTHR18866:SF109 5 430 7.3E-62 T 22-04-2016 TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 PANTHER PTHR18866 5 430 7.3E-62 T 22-04-2016 TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 SUPERFAMILY SSF51569 3 288 5.86E-54 T 22-04-2016 TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 SUPERFAMILY SSF89000 303 453 9.42E-32 T 22-04-2016 TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 Gene3D G3DSA:3.20.20.70 4 283 5.4E-57 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 Pfam PF02436 Conserved carboxylase domain 299 444 5.7E-29 T 22-04-2016 IPR003379 Carboxylase, conserved domain TRD_RS07880 9e5f8a2568cbcdc24b09e051108860b4 496 Pfam PF00682 HMGL-like 4 276 2.3E-23 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:3.30.460.10 153 255 1.5E-15 T 22-04-2016 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 PIRSF PIRSF005047 2 573 7.0E-230 T 22-04-2016 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 PANTHER PTHR11276 4 319 1.0E-71 T 22-04-2016 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 239 247 1.7E-9 T 22-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 297 314 1.7E-9 T 22-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 59 76 1.7E-9 T 22-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 254 261 1.7E-9 T 22-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:1.10.150.20 92 150 7.7E-8 T 22-04-2016 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00278 52 71 0.48 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00278 92 111 27.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00278 127 146 4.6 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:3.30.210.10 256 315 5.1E-25 T 22-04-2016 IPR029398 DNA polymerase beta, thumb domain TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF14791 DNA polymerase beta thumb 254 315 3.3E-24 T 22-04-2016 IPR029398 DNA polymerase beta, thumb domain TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF81301 159 315 1.51E-42 T 22-04-2016 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00483 2 315 2.4E-35 T 22-04-2016 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF14716 Helix-hairpin-helix domain 4 72 2.1E-22 T 22-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF47802 4 85 3.92E-19 T 22-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:3.20.20.140 337 570 7.4E-56 T 22-04-2016 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Pfam PF14520 Helix-hairpin-helix domain 93 147 8.0E-14 T 22-04-2016 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF89550 337 570 6.41E-55 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SUPERFAMILY SSF47781 92 146 4.5E-8 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 SMART SM00481 339 418 8.9E-17 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 TRD_RS02625 3f0ac4d4e6f3be37de18f47be2367f87 581 Gene3D G3DSA:1.10.8.310 3 86 2.2E-22 T 22-04-2016 IPR027420 DNA polymerase beta, N-terminal domain TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 Gene3D G3DSA:3.90.180.10 1 163 1.8E-63 T 22-04-2016 IPR011032 GroES-like TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 133 1.2E-34 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 SMART SM00829 10 325 0.0013 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 12 326 4.9E-105 T 22-04-2016 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 PANTHER PTHR11695:SF403 13 328 5.8E-172 T 22-04-2016 TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 PANTHER PTHR11695 13 328 5.8E-172 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 Gene3D G3DSA:3.40.50.720 164 290 2.2E-6 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 SUPERFAMILY SSF51735 138 290 2.76E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02685 9a1d7b2304b5b6db179a73292cb64bb0 328 SUPERFAMILY SSF50129 1 159 8.07E-58 T 22-04-2016 IPR011032 GroES-like TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 PANTHER PTHR33693 8 208 1.6E-72 T 22-04-2016 TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 SUPERFAMILY SSF52141 24 200 6.87E-65 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 SMART SM00986 49 194 3.7E-40 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 Pfam PF03167 Uracil DNA glycosylase superfamily 49 187 2.2E-46 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 35 200 5.0E-65 T 22-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 PANTHER PTHR33693:SF1 8 208 1.6E-72 T 22-04-2016 TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 SMART SM00987 49 194 3.7E-40 T 22-04-2016 TRD_RS01000 32793b412ea2e4dfe806ea26ef7f4314 226 Gene3D G3DSA:3.40.470.10 25 206 9.6E-73 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 PANTHER PTHR24220 11 252 3.0E-147 T 22-04-2016 TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 Gene3D G3DSA:3.40.50.300 8 242 8.1E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 SUPERFAMILY SSF50331 245 366 1.07E-15 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 SMART SM00382 35 218 1.9E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 Pfam PF08402 TOBE domain 285 367 5.0E-14 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 PANTHER PTHR24220:SF150 11 252 3.0E-147 T 22-04-2016 TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 SUPERFAMILY SSF52540 10 249 1.02E-89 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 Gene3D G3DSA:2.40.50.100 245 291 3.5E-6 T 22-04-2016 TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 41 367 2.2E-121 T 22-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 TRD_RS02420 08221232b3a6c598573277ecbcf6d94a 369 Pfam PF00005 ABC transporter 27 168 1.7E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 42 954 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 SUPERFAMILY SSF52518 596 815 2.06E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 PIRSF PIRSF000157 27 957 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 SUPERFAMILY SSF52518 167 545 4.64E-79 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF00676 Dehydrogenase E1 component 246 539 1.5E-56 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 PANTHER PTHR23152 42 965 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 42 76 9.8E-8 T 22-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 814 955 1.3E-49 T 22-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 Pfam PF02779 Transketolase, pyrimidine binding domain 614 810 8.5E-57 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 PANTHER PTHR23152:SF4 42 965 0.0 T 22-04-2016 TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 Gene3D G3DSA:3.40.50.970 676 814 7.6E-18 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 Gene3D G3DSA:3.40.50.970 174 547 5.5E-71 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02600 1ec27fc343ff34f22c05914acee371cb 965 SMART SM00861 614 809 5.6E-45 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 3.8E-38 T 22-04-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 Gene3D G3DSA:2.30.40.10 3 145 2.4E-46 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PANTHER PTHR22642:SF7 317 500 9.5E-172 T 22-04-2016 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PANTHER PTHR22642:SF7 25 293 9.5E-172 T 22-04-2016 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PANTHER PTHR22642 317 500 9.5E-172 T 22-04-2016 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PANTHER PTHR22642 25 293 9.5E-172 T 22-04-2016 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 SUPERFAMILY SSF51338 421 473 1.96E-43 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 SUPERFAMILY SSF51338 5 131 1.96E-43 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 Pfam PF01979 Amidohydrolase family 127 452 2.2E-52 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 SUPERFAMILY SSF51556 480 565 1.15E-137 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 SUPERFAMILY SSF51556 131 431 1.15E-137 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 Hamap MF_01953 Urease subunit alpha [ureC]. 3 566 44.979 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 565 3.3E-205 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 Gene3D G3DSA:3.20.20.140 487 561 7.1E-145 T 22-04-2016 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 Gene3D G3DSA:3.20.20.140 146 428 7.1E-145 T 22-04-2016 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 331 347 8.5E-25 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 8.5E-25 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 8.5E-25 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02460 042980fc6107fabb597ae7b0dd248960 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 292 309 8.5E-25 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 PANTHER PTHR30519:SF0 1 762 0.0 T 22-04-2016 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 SUPERFAMILY SSF51726 395 756 9.68E-122 T 22-04-2016 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 Gene3D G3DSA:3.20.20.210 393 757 5.1E-135 T 22-04-2016 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 Gene3D G3DSA:3.20.20.210 3 383 3.1E-134 T 22-04-2016 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 430 752 2.7E-152 T 22-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 756 0.0 T 22-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 PIRSF PIRSF000382 1 762 0.0 T 22-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 PANTHER PTHR30519 1 762 0.0 T 22-04-2016 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 313 1.5E-112 T 22-04-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 757 35.915 T 22-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 TRD_RS06340 dbfcf462c3fd140b5e236d0e5149ce63 763 SUPERFAMILY SSF51726 4 382 1.22E-102 T 22-04-2016 TRD_RS04345 b86859a7e8e9089f2f6215cd4dd18197 143 SUPERFAMILY SSF49764 20 141 1.63E-35 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS04345 b86859a7e8e9089f2f6215cd4dd18197 143 Pfam PF00011 Hsp20/alpha crystallin family 41 140 2.3E-19 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain TRD_RS04345 b86859a7e8e9089f2f6215cd4dd18197 143 PANTHER PTHR11527 6 142 4.3E-30 T 22-04-2016 IPR031107 Small heat shock protein HSP20 TRD_RS04345 b86859a7e8e9089f2f6215cd4dd18197 143 Gene3D G3DSA:2.60.40.790 1 142 2.7E-42 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS04345 b86859a7e8e9089f2f6215cd4dd18197 143 PANTHER PTHR11527:SF118 6 142 4.3E-30 T 22-04-2016 TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 PIRSF PIRSF005644 6 337 1.4E-67 T 22-04-2016 IPR011854 Hydrogenase expression/formation protein HypE TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 Gene3D G3DSA:3.90.650.10 153 315 4.2E-12 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 Pfam PF02769 AIR synthase related protein, C-terminal domain 154 314 6.2E-14 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 PANTHER PTHR30303 9 337 7.6E-84 T 22-04-2016 TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 PANTHER PTHR30303:SF0 9 337 7.6E-84 T 22-04-2016 TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 Gene3D G3DSA:3.30.1330.10 19 143 1.1E-24 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 SUPERFAMILY SSF56042 149 319 7.18E-27 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 Pfam PF00586 AIR synthase related protein, N-terminal domain 38 141 4.4E-18 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS02775 769669c4049da7c1d6fc09cb4e7c6388 343 SUPERFAMILY SSF55326 28 141 1.92E-24 T 22-04-2016 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 285 485 1.5E-59 T 22-04-2016 IPR024719 HpaB/PvcC/4-BUDH C-terminal TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 Gene3D G3DSA:2.40.110.10 148 270 3.9E-43 T 22-04-2016 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 Gene3D G3DSA:1.10.3140.10 10 145 5.8E-49 T 22-04-2016 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 PANTHER PTHR36117 10 510 2.4E-243 T 22-04-2016 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 13 278 8.2E-85 T 22-04-2016 IPR024674 HpaB/PvcC/4-BUDH N-terminal TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 PIRSF PIRSF000331 9 497 2.4E-159 T 22-04-2016 IPR004925 HpaB/PvcC/4-BUDH TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 Gene3D G3DSA:1.20.140.10 271 464 5.2E-29 T 22-04-2016 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 PANTHER PTHR36117:SF1 10 510 2.4E-243 T 22-04-2016 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 SUPERFAMILY SSF47203 270 489 1.69E-41 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 SUPERFAMILY SSF56645 11 279 1.19E-67 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 TRD_RS06555 096e6c717d7a4d472c912906d8062078 511 PIRSF PIRSF500125 2 509 6.9E-213 T 22-04-2016 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 SUPERFAMILY SSF52172 16 138 4.98E-41 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 Gene3D G3DSA:3.40.50.2300 11 138 9.3E-40 T 22-04-2016 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 238 2.8E-25 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 SMART SM00448 19 129 2.4E-43 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 SUPERFAMILY SSF46894 140 240 2.44E-27 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 PANTHER PTHR26402 19 247 3.5E-84 T 22-04-2016 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 Gene3D G3DSA:1.10.10.10 140 240 2.2E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 Pfam PF00072 Response regulator receiver domain 21 129 3.0E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 PANTHER PTHR26402:SF50 19 247 3.5E-84 T 22-04-2016 TRD_RS08560 17c58fb1496cabf197fd9fdfaf4356dd 253 SMART SM00862 163 238 3.6E-28 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 Gene3D G3DSA:3.20.20.70 2 170 1.2E-58 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 Pfam PF00701 Dihydrodipicolinate synthetase family 3 167 3.4E-45 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 SUPERFAMILY SSF51569 2 169 1.57E-50 T 22-04-2016 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 PANTHER PTHR12128:SF34 3 184 4.9E-59 T 22-04-2016 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 PANTHER PTHR12128 3 184 4.9E-59 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 15 45 - T 22-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS13915 a7b2c2ff3d2e2187eb8ee1c4897b9ccc 184 SMART SM01130 1 171 7.5E-11 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS07490 13b185306d60ab5f8efe6a55beaee59a 357 Pfam PF01050 Mannose-6-phosphate isomerase 316 354 1.9E-7 T 22-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 TRD_RS07490 13b185306d60ab5f8efe6a55beaee59a 357 Gene3D G3DSA:3.90.550.10 1 271 5.9E-85 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS07490 13b185306d60ab5f8efe6a55beaee59a 357 PANTHER PTHR12526 151 275 1.1E-37 T 22-04-2016 TRD_RS07490 13b185306d60ab5f8efe6a55beaee59a 357 SUPERFAMILY SSF159283 285 349 2.48E-16 T 22-04-2016 TRD_RS07490 13b185306d60ab5f8efe6a55beaee59a 357 SUPERFAMILY SSF53448 1 280 6.29E-61 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS07490 13b185306d60ab5f8efe6a55beaee59a 357 Pfam PF00483 Nucleotidyl transferase 4 285 1.4E-39 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 TRD_RS09750 55192b0469e3d02be358948a6e443b2b 166 Pfam PF00271 Helicase conserved C-terminal domain 7 77 2.4E-17 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS09750 55192b0469e3d02be358948a6e443b2b 166 SMART SM00490 1 78 3.1E-18 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS09750 55192b0469e3d02be358948a6e443b2b 166 PANTHER PTHR14025 1 130 1.6E-45 T 22-04-2016 TRD_RS09750 55192b0469e3d02be358948a6e443b2b 166 Gene3D G3DSA:3.40.50.300 7 126 1.9E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS09750 55192b0469e3d02be358948a6e443b2b 166 SUPERFAMILY SSF52540 2 139 5.04E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS09750 55192b0469e3d02be358948a6e443b2b 166 PANTHER PTHR14025:SF21 1 130 1.6E-45 T 22-04-2016 TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 PANTHER PTHR34298 1 164 1.7E-48 T 22-04-2016 TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 Gene3D G3DSA:1.10.10.10 6 78 8.4E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 SUPERFAMILY SSF46785 4 78 1.35E-9 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 7 166 1.5E-32 T 22-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 SUPERFAMILY SSF46785 83 155 2.93E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 PIRSF PIRSF019345 1 167 3.0E-44 T 22-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 164 7.8E-46 T 22-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 TRD_RS07640 377ae59b986bc3bb40ee2dc01b1c7095 167 Gene3D G3DSA:1.10.10.10 83 155 1.2E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 Pfam PF07478 D-ala D-ala ligase C-terminus 146 350 1.0E-77 T 22-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 PANTHER PTHR23132 3 363 5.6E-177 T 22-04-2016 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 353 43.248 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 PIRSF PIRSF039102 2 361 6.7E-121 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 SUPERFAMILY SSF56059 139 357 8.49E-57 T 22-04-2016 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 106 117 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 Gene3D G3DSA:3.30.470.20 226 363 1.1E-50 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 294 323 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 Gene3D G3DSA:3.40.50.20 3 128 3.4E-37 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 PANTHER PTHR23132:SF8 3 363 5.6E-177 T 22-04-2016 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 Pfam PF01820 D-ala D-ala ligase N-terminus 6 129 7.1E-36 T 22-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 352 5.7E-114 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 Gene3D G3DSA:3.30.1490.20 162 225 2.0E-24 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS00305 6403e382fc5c231d2040bc972dc3e0f9 372 SUPERFAMILY SSF52440 4 138 1.06E-38 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 6 62 2.7E-15 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 4 60 15.334 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 Pfam PF01165 Ribosomal protein S21 6 60 2.0E-14 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 16 25 8.0E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 28 38 8.0E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 40 50 8.0E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS02490 7d0bb97c409c43375e908281a968b9cc 74 PRINTS PR00976 Ribosomal protein S21 family signature 8 16 8.0E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 SUPERFAMILY SSF54826 3 106 3.07E-22 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Pfam PF13378 Enolase C-terminal domain-like 136 382 6.5E-40 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 SUPERFAMILY SSF51604 89 389 4.95E-58 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Gene3D G3DSA:3.30.390.10 13 105 1.8E-29 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 PANTHER PTHR13794:SF4 178 387 6.8E-69 T 22-04-2016 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 PANTHER PTHR13794:SF4 16 146 6.8E-69 T 22-04-2016 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 PANTHER PTHR13794 16 146 6.8E-69 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 76 101 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 PANTHER PTHR13794 178 387 6.8E-69 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 16 101 5.1E-14 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 Gene3D G3DSA:3.20.20.120 106 380 2.7E-65 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09090 60fb7b2159e8bdf5d62cd7b6d526c82f 397 SMART SM00922 124 259 6.1E-6 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal TRD_RS07335 b9c56552314dc377e16656e6bb1adbc5 388 Gene3D G3DSA:3.90.1150.10 259 379 7.5E-20 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS07335 b9c56552314dc377e16656e6bb1adbc5 388 PIRSF PIRSF005572 1 387 1.4E-59 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 TRD_RS07335 b9c56552314dc377e16656e6bb1adbc5 388 PANTHER PTHR11601 4 382 2.4E-110 T 22-04-2016 TRD_RS07335 b9c56552314dc377e16656e6bb1adbc5 388 Pfam PF00266 Aminotransferase class-V 4 372 1.8E-82 T 22-04-2016 IPR000192 Aminotransferase class V domain TRD_RS07335 b9c56552314dc377e16656e6bb1adbc5 388 SUPERFAMILY SSF53383 3 380 1.14E-102 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS07335 b9c56552314dc377e16656e6bb1adbc5 388 Gene3D G3DSA:3.40.640.10 16 258 2.0E-80 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF55008 12 84 6.54E-21 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF81653 317 415 1.7E-32 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 247 816 1.9E-193 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 517 523 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Gene3D G3DSA:3.30.70.100 94 163 1.8E-27 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00942 Copper-transporting ATPase 1 signature 15 40 3.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00942 Copper-transporting ATPase 1 signature 230 255 3.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00942 Copper-transporting ATPase 1 signature 118 139 3.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Pfam PF00702 haloacid dehalogenase-like hydrolase 512 728 1.8E-46 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 229 817 6.2E-177 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF81665 416 509 1.83E-13 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF81665 763 791 1.83E-13 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF81665 280 319 1.83E-13 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Gene3D G3DSA:3.40.1110.10 530 641 6.0E-25 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Gene3D G3DSA:3.40.50.1000 642 782 1.5E-55 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Gene3D G3DSA:3.40.50.1000 487 529 1.5E-55 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 ProSitePatterns PS01047 Heavy-metal-associated domain. 100 129 - T 22-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 96 159 2.6E-11 T 22-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 18 79 3.5E-12 T 22-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 305 323 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 110 124 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 285 304 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 691 708 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 232 251 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 139 159 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00943 Copper-transporting ATPase signature 438 452 2.0E-9 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 714 733 4.4E-34 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 737 749 4.4E-34 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 671 4.4E-34 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 365 379 4.4E-34 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 650 4.4E-34 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 515 529 4.4E-34 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Gene3D G3DSA:2.70.150.10 278 416 4.3E-35 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF55008 93 162 3.53E-24 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 288 798 3.0E-99 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Gene3D G3DSA:3.30.70.100 16 82 2.8E-24 T 22-04-2016 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Pfam PF00403 Heavy-metal-associated domain 98 158 9.6E-17 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Pfam PF00403 Heavy-metal-associated domain 18 78 2.5E-16 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 Pfam PF00122 E1-E2 ATPase 287 506 1.6E-69 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 ProSitePatterns PS01047 Heavy-metal-associated domain. 20 49 - T 22-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF56784 513 533 7.66E-68 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 SUPERFAMILY SSF56784 572 814 7.66E-68 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06645 e696c9c88d8f6e2a89abd179155bea37 820 PANTHER PTHR24093 15 818 7.6E-286 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 27 1128 12.482 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04563 RNA polymerase beta subunit 41 384 1.8E-20 T 22-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04565 RNA polymerase Rpb2, domain 3 403 471 2.3E-31 T 22-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.270.10 731 758 3.9E-79 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.270.10 900 1028 3.9E-79 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 PANTHER PTHR20856 549 1132 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 PANTHER PTHR20856 1 493 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.50.150 765 899 3.0E-58 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.40.50.100 660 730 1.8E-29 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 PANTHER PTHR20856:SF20 549 1132 0.0 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 PANTHER PTHR20856:SF20 1 493 0.0 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04560 RNA polymerase Rpb2, domain 7 1052 1126 3.7E-27 T 22-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 SUPERFAMILY SSF64484 26 480 0.0 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 SUPERFAMILY SSF64484 536 1136 0.0 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 ProSitePatterns PS01166 RNA polymerases beta chain signature. 903 915 - T 22-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:2.30.150.10 542 601 5.2E-22 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF10385 RNA polymerase beta subunit external 1 domain 538 601 2.9E-22 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF00562 RNA polymerase Rpb2, domain 6 662 1050 7.9E-169 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1110.10 154 333 1.6E-56 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1100.10 604 658 1.4E-140 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1100.10 334 482 1.4E-140 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Gene3D G3DSA:3.90.1100.10 34 152 1.4E-140 T 22-04-2016 TRD_RS04560 b70982b85e7bfc7fd4747dc1eab5d9d7 1162 Pfam PF04561 RNA polymerase Rpb2, domain 2 152 343 3.6E-33 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS09115 114c1563ddc2360210eb2289e7b6e7ef 334 SUPERFAMILY SSF161098 100 313 2.83E-10 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS09115 114c1563ddc2360210eb2289e7b6e7ef 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 330 2.7E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS09115 114c1563ddc2360210eb2289e7b6e7ef 334 Gene3D G3DSA:1.10.3720.10 100 321 3.5E-10 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS09115 114c1563ddc2360210eb2289e7b6e7ef 334 PANTHER PTHR30465 1 331 6.4E-118 T 22-04-2016 TRD_RS09115 114c1563ddc2360210eb2289e7b6e7ef 334 PANTHER PTHR30465:SF55 1 331 6.4E-118 T 22-04-2016 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 PANTHER PTHR11079:SF73 10 319 3.0E-119 T 22-04-2016 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 PANTHER PTHR11079 10 319 3.0E-119 T 22-04-2016 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 309 5.8E-89 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 Pfam PF00849 RNA pseudouridylate synthase 96 248 7.0E-35 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 Gene3D G3DSA:3.10.290.10 22 70 1.5E-11 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 Pfam PF01479 S4 domain 22 67 3.4E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 SMART SM00363 22 82 3.1E-10 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 SUPERFAMILY SSF55174 22 110 3.03E-12 T 22-04-2016 TRD_RS04750 bac96e0a7a608f271d8a4243b671f889 322 SUPERFAMILY SSF55120 80 309 3.5E-78 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS13570 7217d24f8cc660787d7bd18d670df0d7 228 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 30 206 5.6E-21 T 22-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS13570 7217d24f8cc660787d7bd18d670df0d7 228 Pfam PF00929 Exonuclease 35 199 1.4E-21 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III TRD_RS13570 7217d24f8cc660787d7bd18d670df0d7 228 PANTHER PTHR30231 15 205 7.2E-40 T 22-04-2016 TRD_RS13570 7217d24f8cc660787d7bd18d670df0d7 228 SUPERFAMILY SSF53098 27 208 8.44E-42 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS13570 7217d24f8cc660787d7bd18d670df0d7 228 Gene3D G3DSA:3.30.420.10 28 214 2.6E-44 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS13570 7217d24f8cc660787d7bd18d670df0d7 228 SMART SM00479 32 210 6.3E-30 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 Pfam PF00977 Histidine biosynthesis protein 3 229 6.9E-72 T 22-04-2016 IPR006062 Histidine biosynthesis GO:0000105 TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 34.19 T 22-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 Gene3D G3DSA:3.20.20.70 3 233 1.3E-76 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 232 6.1E-75 T 22-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 PANTHER PTHR21235 1 232 5.5E-87 T 22-04-2016 TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 PANTHER PTHR21235:SF15 1 232 5.5E-87 T 22-04-2016 TRD_RS00875 f2290b786475113035f21a3a8f35988a 244 SUPERFAMILY SSF51366 2 233 2.02E-64 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS08795 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 Pfam PF00498 FHA domain 104 167 3.1E-19 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS08795 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 SMART SM00240 102 153 2.8E-12 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS08795 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 Gene3D G3DSA:2.60.200.20 92 178 2.9E-26 T 22-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 TRD_RS08795 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 PANTHER PTHR15715 91 167 2.0E-12 T 22-04-2016 TRD_RS08795 9bc7f7ec64b9a4fe56b2ae0c58e6c8c2 193 SUPERFAMILY SSF49879 79 177 2.49E-27 T 22-04-2016 IPR008984 SMAD/FHA domain GO:0005515 TRD_RS07450 155a48bf5b0c8a0a3c839e7e0e41553b 382 Pfam PF13692 Glycosyl transferases group 1 195 340 1.3E-14 T 22-04-2016 TRD_RS07450 155a48bf5b0c8a0a3c839e7e0e41553b 382 PANTHER PTHR12526 5 377 8.1E-31 T 22-04-2016 TRD_RS07450 155a48bf5b0c8a0a3c839e7e0e41553b 382 SUPERFAMILY SSF53756 5 372 2.16E-50 T 22-04-2016 TRD_RS07450 155a48bf5b0c8a0a3c839e7e0e41553b 382 Pfam PF13579 Glycosyl transferase 4-like domain 17 170 9.3E-13 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS07450 155a48bf5b0c8a0a3c839e7e0e41553b 382 Gene3D G3DSA:3.40.50.2000 156 352 3.1E-15 T 22-04-2016 TRD_RS01865 7211fceadfadcafd33288af1852c1177 128 SUPERFAMILY SSF103481 29 124 7.06E-9 T 22-04-2016 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.30.1490.20 142 200 9.8E-19 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.40.50.20 532 661 2.2E-49 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SMART SM01096 420 540 8.2E-65 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.30.470.20 201 397 1.8E-79 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.30.470.20 745 934 9.0E-64 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 836 843 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SMART SM01209 678 843 0.0048 T 22-04-2016 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 6.6E-76 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 672 872 7.7E-34 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1070 13.297 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:1.10.1030.10 398 531 5.9E-49 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PANTHER PTHR11405 1 1055 0.0 T 22-04-2016 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1064 12.69 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PANTHER PTHR11405:SF5 1 1055 0.0 T 22-04-2016 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF56059 128 399 5.13E-107 T 22-04-2016 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF48108 394 546 1.83E-47 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 4.3E-65 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF52335 943 1060 4.45E-28 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.40.50.20 8 108 5.7E-42 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02142 MGS-like domain 957 1043 1.2E-17 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.30.1490.20 685 744 3.7E-24 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 7 1055 0.0 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF52440 550 673 1.44E-38 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 708 722 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 2.9E-40 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF52440 7 127 4.46E-46 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SUPERFAMILY SSF56059 672 933 2.65E-94 T 22-04-2016 TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 Gene3D G3DSA:3.40.50.1380 943 1066 6.5E-31 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS01025 48932cc12bc336d96802f9e9c7c7535d 1078 SMART SM00851 955 1043 2.3E-22 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 PANTHER PTHR33992 1 110 6.2E-25 T 22-04-2016 TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 6 111 9.5E-18 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 Gene3D G3DSA:3.30.230.10 3 112 7.2E-31 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 33 109 3.0E-13 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 2 113 18.317 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 Pfam PF00825 Ribonuclease P 3 110 2.3E-26 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 22-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 TRD_RS05035 4fa3f87e1aa0a52578d2b8fab0ab4cd6 129 SUPERFAMILY SSF54211 3 112 2.43E-23 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 Gene3D G3DSA:3.30.830.10 3 215 3.3E-61 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 SUPERFAMILY SSF63411 230 411 1.83E-43 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 22-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 PANTHER PTHR11851 3 414 2.7E-121 T 22-04-2016 TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 SUPERFAMILY SSF63411 2 207 1.19E-61 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 Gene3D G3DSA:3.30.830.10 233 413 3.7E-44 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 Pfam PF05193 Peptidase M16 inactive domain 168 341 1.0E-38 T 22-04-2016 IPR007863 Peptidase M16, C-terminal TRD_RS07035 af8ce30985d7c62228125d288cea2eae 421 Pfam PF00675 Insulinase (Peptidase family M16) 13 160 2.7E-40 T 22-04-2016 IPR011765 Peptidase M16, N-terminal TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 PANTHER PTHR18968:SF13 1 546 2.9E-134 T 22-04-2016 TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 SUPERFAMILY SSF52518 380 548 6.25E-47 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Gene3D G3DSA:3.40.50.1220 200 394 2.5E-39 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 19 187 5.9E-55 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 406 545 5.1E-32 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Gene3D G3DSA:3.40.50.970 18 193 6.6E-59 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 PANTHER PTHR18968 1 546 2.9E-134 T 22-04-2016 TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 SUPERFAMILY SSF52518 18 201 1.31E-51 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 436 455 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Gene3D G3DSA:3.40.50.970 395 548 1.3E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 206 341 1.7E-27 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 TRD_RS03765 cb2655fe8b8b0075db9fdc2dfcaa3280 551 SUPERFAMILY SSF52467 172 364 2.93E-37 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 63 112 2.3E-6 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:1.10.8.10 244 274 1.3E-15 T 22-04-2016 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:1.10.8.10 124 205 1.3E-15 T 22-04-2016 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:3.40.50.300 14 120 2.5E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:3.40.50.300 276 362 2.5E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 SMART SM00382 59 367 2.1E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 PANTHER PTHR11262:SF3 249 474 2.1E-186 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 PANTHER PTHR11262:SF3 14 115 2.1E-186 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Gene3D G3DSA:1.10.8.60 366 474 1.6E-33 T 22-04-2016 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 Pfam PF07724 AAA domain (Cdc48 subfamily) 221 360 4.9E-36 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 PANTHER PTHR11262 249 474 2.1E-186 T 22-04-2016 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 PANTHER PTHR11262 14 115 2.1E-186 T 22-04-2016 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 SMART SM01086 366 460 9.1E-18 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 14 474 5.5E-171 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 TRD_RS07505 916595fc196e74770b129ceabf4a3348 474 SUPERFAMILY SSF52540 14 470 6.62E-76 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05390 03721c037a35a450bd3197a05382989c 407 PANTHER PTHR23517 17 400 3.0E-27 T 22-04-2016 TRD_RS05390 03721c037a35a450bd3197a05382989c 407 SUPERFAMILY SSF103473 14 400 1.01E-52 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS05390 03721c037a35a450bd3197a05382989c 407 Gene3D G3DSA:1.20.1250.20 17 191 7.2E-32 T 22-04-2016 TRD_RS05390 03721c037a35a450bd3197a05382989c 407 Gene3D G3DSA:1.20.1250.20 221 402 3.9E-16 T 22-04-2016 TRD_RS05390 03721c037a35a450bd3197a05382989c 407 Pfam PF07690 Major Facilitator Superfamily 22 333 1.7E-33 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 Gene3D G3DSA:3.10.25.10 211 312 6.2E-31 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 33.741 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 PANTHER PTHR11138 5 307 6.8E-102 T 22-04-2016 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 SUPERFAMILY SSF50486 209 311 9.89E-28 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 SUPERFAMILY SSF53328 5 210 1.7E-62 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 6 305 1.2E-85 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 Pfam PF02911 Formyl transferase, C-terminal domain 209 304 1.7E-26 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 Gene3D G3DSA:3.40.50.170 4 207 3.9E-66 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03775 a264c8af0b0f7c9d1962f50259ccb7db 313 Pfam PF00551 Formyl transferase 6 184 3.6E-41 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 379 413 4.7E-6 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 301 335 1.1E-6 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 251 284 2.3E-4 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Pfam PF12804 MobA-like NTP transferase domain 6 114 7.6E-14 T 22-04-2016 IPR025877 MobA-like NTP transferase TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Gene3D G3DSA:3.90.550.10 1 235 8.6E-46 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 SUPERFAMILY SSF51161 235 432 2.65E-51 T 22-04-2016 IPR011004 Trimeric LpxA-like TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Gene3D G3DSA:2.160.10.10 241 425 2.1E-47 T 22-04-2016 TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 436 30.159 T 22-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 PANTHER PTHR22572 1 433 2.9E-134 T 22-04-2016 TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 SUPERFAMILY SSF53448 3 291 6.76E-43 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 PANTHER PTHR22572:SF115 1 433 2.9E-134 T 22-04-2016 TRD_RS00155 fbf7b01cb26aa793e316b1ab9a223496 442 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 1 423 6.9E-125 T 22-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 66 132 1.9E-31 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 SUPERFAMILY SSF54736 61 132 1.73E-25 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 7 52 2.7E-18 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 PANTHER PTHR24089:SF321 6 129 1.1E-23 T 22-04-2016 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 68 132 3.0E-19 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 Gene3D G3DSA:1.20.5.710 9 54 3.8E-18 T 22-04-2016 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 TIGRFAM TIGR00855 L12: ribosomal protein bL12 6 132 3.8E-47 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 PANTHER PTHR24089 6 129 1.1E-23 T 22-04-2016 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 132 25.589 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 Gene3D G3DSA:3.30.1390.10 59 132 4.5E-34 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like TRD_RS03135 e2614707427eb9790192f7e6aebb2556 132 SUPERFAMILY SSF48300 7 68 7.06E-16 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS02410 5dd76bb536dc8bc8e0dd32f2ad2dfc3d 283 Gene3D G3DSA:1.10.3720.10 22 281 8.8E-64 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02410 5dd76bb536dc8bc8e0dd32f2ad2dfc3d 283 PANTHER PTHR30222 27 282 2.8E-83 T 22-04-2016 TRD_RS02410 5dd76bb536dc8bc8e0dd32f2ad2dfc3d 283 SUPERFAMILY SSF161098 19 277 3.46E-61 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02410 5dd76bb536dc8bc8e0dd32f2ad2dfc3d 283 PANTHER PTHR30222:SF6 27 282 2.8E-83 T 22-04-2016 TRD_RS02410 5dd76bb536dc8bc8e0dd32f2ad2dfc3d 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 279 6.9E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 113 130 - T 22-04-2016 IPR001882 Biotin-binding site TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 Gene3D G3DSA:2.40.50.100 82 156 7.8E-31 T 22-04-2016 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 SUPERFAMILY SSF51230 82 156 3.01E-25 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 20 156 2.4E-40 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 PANTHER PTHR23151:SF64 22 157 3.4E-36 T 22-04-2016 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 103 117 1.9E-16 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 86 99 1.9E-16 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 118 131 1.9E-16 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 Pfam PF00364 Biotin-requiring enzyme 83 156 4.7E-25 T 22-04-2016 IPR000089 Biotin/lipoyl attachment TRD_RS07960 533bfce141851f4f5de38fcc86f3eab3 159 PANTHER PTHR23151 22 157 3.4E-36 T 22-04-2016 TRD_RS04800 689648cdb76068862a270a39380e69be 349 SMART SM00729 34 238 8.2E-15 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 TRD_RS04800 689648cdb76068862a270a39380e69be 349 Pfam PF06463 Molybdenum Cofactor Synthesis C 206 332 6.2E-37 T 22-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04800 689648cdb76068862a270a39380e69be 349 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 27 349 2.2E-116 T 22-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04800 689648cdb76068862a270a39380e69be 349 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 25 349 39.735 T 22-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04800 689648cdb76068862a270a39380e69be 349 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 40 51 - T 22-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04800 689648cdb76068862a270a39380e69be 349 Pfam PF13353 4Fe-4S single cluster domain 41 139 9.3E-7 T 22-04-2016 TRD_RS04800 689648cdb76068862a270a39380e69be 349 Gene3D G3DSA:3.20.20.70 27 328 3.4E-83 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS04800 689648cdb76068862a270a39380e69be 349 SUPERFAMILY SSF102114 27 301 7.98E-77 T 22-04-2016 TRD_RS04800 689648cdb76068862a270a39380e69be 349 Pfam PF04055 Radical SAM superfamily 39 197 7.2E-30 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 TRD_RS04800 689648cdb76068862a270a39380e69be 349 PANTHER PTHR22960 19 304 1.1E-125 T 22-04-2016 TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 15 346 6.5E-120 T 22-04-2016 IPR011854 Hydrogenase expression/formation protein HypE TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 171 318 3.8E-26 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 SUPERFAMILY SSF55326 15 162 3.66E-29 T 22-04-2016 TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 PANTHER PTHR30303 11 346 1.9E-126 T 22-04-2016 TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 SUPERFAMILY SSF56042 166 342 4.49E-44 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 Gene3D G3DSA:3.90.650.10 171 326 4.1E-26 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 48 159 3.6E-15 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 PANTHER PTHR30303:SF0 11 346 1.9E-126 T 22-04-2016 TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 Gene3D G3DSA:3.30.1330.10 37 161 9.0E-21 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS08720 a5de8bb1638408c9a7687727a901a542 346 PIRSF PIRSF005644 10 346 1.6E-109 T 22-04-2016 IPR011854 Hydrogenase expression/formation protein HypE TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 SUPERFAMILY SSF51246 329 444 1.52E-43 T 22-04-2016 IPR011054 Rudiment single hybrid motif TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 Gene3D G3DSA:3.40.50.20 1 128 5.4E-46 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 9.1E-41 T 22-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 Gene3D G3DSA:3.30.470.20 202 443 4.1E-100 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 4.0E-40 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 PANTHER PTHR18866 1 445 1.4E-276 T 22-04-2016 TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 SUPERFAMILY SSF56059 82 351 6.89E-74 T 22-04-2016 TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 2 446 2.1E-200 T 22-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 SUPERFAMILY SSF52440 1 112 6.83E-44 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 SMART SM00878 335 441 1.7E-62 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 Gene3D G3DSA:3.30.1490.20 129 201 9.1E-31 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS07575 4bd47c70164ecc2bb0a4a5562c4a4bac 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 321 1.7E-80 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 273 292 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 141 160 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 438 453 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 462 479 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 244 260 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 123 141 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 383 401 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 425 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 40 65 4.3E-71 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 SUPERFAMILY SSF56235 11 556 1.62E-158 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 Pfam PF01019 Gamma-glutamyltranspeptidase 33 532 5.3E-144 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PANTHER PTHR11686:SF9 7 556 4.1E-168 T 22-04-2016 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 PANTHER PTHR11686 7 556 4.1E-168 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS06250 31b2bbf4c7a8d7b139808bf01fa485c3 566 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 18 556 9.8E-139 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF01336 OB-fold nucleic acid binding domain 996 1064 7.3E-8 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 PANTHER PTHR32294 2 1157 0.0 T 22-04-2016 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 PANTHER PTHR32294:SF0 2 1157 0.0 T 22-04-2016 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 294 719 1.1E-164 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 Gene3D G3DSA:3.20.20.140 6 255 4.2E-51 T 22-04-2016 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 SUPERFAMILY SSF89550 6 264 1.18E-36 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 Gene3D G3DSA:2.40.50.140 976 1067 3.9E-5 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 SMART SM00481 6 73 5.6E-26 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1027 0.0 T 22-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF14579 Helix-hairpin-helix motif 797 889 3.2E-25 T 22-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03370 1dbe5d411e55cf3b2262aa2bed761be4 1166 Pfam PF02811 PHP domain 7 175 3.1E-48 T 22-04-2016 IPR004013 PHP domain GO:0003824 TRD_RS05690 4474898151a4d9777a9607e2452bbef9 248 SUPERFAMILY SSF52540 15 229 9.87E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05690 4474898151a4d9777a9607e2452bbef9 248 Pfam PF00005 ABC transporter 34 174 1.6E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS05690 4474898151a4d9777a9607e2452bbef9 248 PANTHER PTHR24220 20 228 9.3E-80 T 22-04-2016 TRD_RS05690 4474898151a4d9777a9607e2452bbef9 248 SMART SM00382 43 224 1.9E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS05690 4474898151a4d9777a9607e2452bbef9 248 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 19 207 4.4E-45 T 22-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 TRD_RS05690 4474898151a4d9777a9607e2452bbef9 248 Gene3D G3DSA:3.40.50.300 15 229 4.5E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 Gene3D G3DSA:3.30.1490.20 21 86 1.8E-20 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 Gene3D G3DSA:3.30.470.20 87 231 4.3E-53 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 375 1.0E-148 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 PANTHER PTHR11815 1 378 8.6E-191 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 Pfam PF08442 ATP-grasp domain 2 194 1.3E-69 T 22-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 SUPERFAMILY SSF52210 231 375 5.36E-50 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 SUPERFAMILY SSF56059 1 230 2.12E-72 T 22-04-2016 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 Pfam PF00549 CoA-ligase 254 372 3.7E-22 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 376 41.943 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 PANTHER PTHR11815:SF1 1 378 8.6E-191 T 22-04-2016 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 249 274 - T 22-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 Gene3D G3DSA:3.40.50.261 232 375 3.7E-59 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08425 730a38735682bbe74a0e8cb1c7b3a850 378 PIRSF PIRSF001554 1 378 7.1E-147 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 Gene3D G3DSA:3.40.50.1370 149 299 1.7E-58 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 11 312 9.5E-120 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PANTHER PTHR11405:SF1 11 317 3.4E-141 T 22-04-2016 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 11 151 9.1E-50 T 22-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 9 313 75.291 T 22-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 Gene3D G3DSA:3.40.50.1370 11 148 9.1E-56 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 265 274 1.2E-27 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 138 149 1.2E-27 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 277 300 1.2E-27 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 56 75 1.2E-27 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 3.2E-31 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 87 100 3.2E-31 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 54 68 3.2E-31 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 291 302 3.2E-31 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PRINTS PR00102 Ornithine carbamoyltransferase signature 127 141 3.2E-31 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 309 1.6E-48 T 22-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 56 63 - T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 SUPERFAMILY SSF53671 10 314 1.7E-101 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 TRD_RS06710 9c51f254add38950b90c0cb8d77ee029 321 PANTHER PTHR11405 11 317 3.4E-141 T 22-04-2016 TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 SUPERFAMILY SSF48008 83 218 7.59E-30 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 SUPERFAMILY SSF46785 11 81 6.45E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 Gene3D G3DSA:1.10.10.10 8 78 5.4E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 3.4E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 3.4E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 SMART SM00895 87 212 3.9E-20 T 22-04-2016 IPR011711 GntR, C-terminal TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 SMART SM00345 19 77 2.6E-14 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 Gene3D G3DSA:1.20.120.530 80 217 4.3E-30 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 1.4E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 PANTHER PTHR11751 14 103 3.5E-23 T 22-04-2016 TRD_RS00620 4e06ffd42bccfd14d6f89190309194c5 227 Pfam PF07729 FCD domain 87 211 1.5E-25 T 22-04-2016 IPR011711 GntR, C-terminal TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 22-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 Gene3D G3DSA:3.30.1330.50 1 157 1.8E-64 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 SUPERFAMILY SSF69765 1 158 2.49E-61 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 PANTHER PTHR32125 1 157 7.6E-44 T 22-04-2016 TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 156 1.3E-58 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 34.614 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08070 51366abc5aed4cc6c13f7021d9daf18d 169 Pfam PF02542 YgbB family 2 156 6.2E-59 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS09205 9aa3b9635dd0e90d5a698c2194647ade 334 Pfam PF03916 Polysulphide reductase, NrfD 36 316 5.2E-29 T 22-04-2016 IPR005614 NrfD family TRD_RS09205 9aa3b9635dd0e90d5a698c2194647ade 334 Gene3D G3DSA:1.20.1630.10 24 234 1.7E-16 T 22-04-2016 TRD_RS02845 f0e622e93d39e24615b6e534ba634bc3 339 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 26 326 1.6E-25 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS02845 f0e622e93d39e24615b6e534ba634bc3 339 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 26 316 2.9E-36 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS00765 28f811c012f1dcf3b504fd2f11d1aad3 127 SUPERFAMILY SSF75169 6 127 1.77E-21 T 22-04-2016 IPR027396 DsrEFH-like TRD_RS00765 28f811c012f1dcf3b504fd2f11d1aad3 127 Pfam PF02635 DsrE/DsrF-like family 6 127 9.3E-17 T 22-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein TRD_RS00765 28f811c012f1dcf3b504fd2f11d1aad3 127 PANTHER PTHR34655 1 127 1.3E-15 T 22-04-2016 TRD_RS00765 28f811c012f1dcf3b504fd2f11d1aad3 127 Gene3D G3DSA:3.40.1260.10 2 125 5.8E-25 T 22-04-2016 IPR027396 DsrEFH-like TRD_RS00765 28f811c012f1dcf3b504fd2f11d1aad3 127 PANTHER PTHR34655:SF2 1 127 1.3E-15 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PANTHER PTHR10133 3 914 0.0 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:1.20.1060.10 517 635 1.2E-38 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF00476 DNA polymerase family A 524 907 3.1E-154 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 176 2.0E-54 T 22-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF56672 495 908 5.23E-158 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00475 6 268 6.2E-135 T 22-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00482 658 873 2.5E-115 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF01612 3'-5' exonuclease 310 491 6.3E-25 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.30.420.10 309 515 2.3E-61 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:1.10.150.20 192 252 2.7E-25 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF88723 4 176 8.59E-53 T 22-04-2016 IPR029060 PIN domain-like TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:1.10.150.20 693 799 2.2E-35 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF53098 309 491 3.68E-41 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 704 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 627 649 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 735 760 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 711 724 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 772 783 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 826 842 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PRINTS PR00868 DNA-polymerase family A (pol I) signature 856 869 8.6E-70 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 PANTHER PTHR10133:SF27 3 914 0.0 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00279 179 214 1.5E-16 T 22-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SUPERFAMILY SSF47807 178 291 1.18E-29 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 TIGRFAM TIGR00593 pola: DNA polymerase I 10 908 0.0 T 22-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 178 272 4.2E-29 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.40.50.1010 9 191 5.7E-65 T 22-04-2016 IPR029060 PIN domain-like TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.30.70.370 636 692 3.0E-63 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 Gene3D G3DSA:3.30.70.370 800 908 3.0E-63 T 22-04-2016 TRD_RS03210 eec191449d43e8e7edfea0eae43b023c 917 SMART SM00474 308 491 4.7E-22 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 TRD_RS04325 64cdfe4ac8d8283c53641940b15249be 418 SUPERFAMILY SSF53756 34 407 3.1E-46 T 22-04-2016 TRD_RS04325 64cdfe4ac8d8283c53641940b15249be 418 Pfam PF00534 Glycosyl transferases group 1 222 385 2.6E-24 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS04325 64cdfe4ac8d8283c53641940b15249be 418 Gene3D G3DSA:3.40.50.2000 190 385 6.8E-23 T 22-04-2016 TRD_RS04325 64cdfe4ac8d8283c53641940b15249be 418 PANTHER PTHR12526 6 411 1.9E-88 T 22-04-2016 TRD_RS04325 64cdfe4ac8d8283c53641940b15249be 418 PANTHER PTHR12526:SF220 6 411 1.9E-88 T 22-04-2016 TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 SUPERFAMILY SSF82282 1 375 1.31E-111 T 22-04-2016 IPR003726 Homocysteine-binding domain TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 PANTHER PTHR21091:SF97 1 367 9.7E-73 T 22-04-2016 TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 PANTHER PTHR21091 1 367 9.7E-73 T 22-04-2016 TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 Pfam PF02219 Methylenetetrahydrofolate reductase 331 599 3.7E-38 T 22-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 Gene3D G3DSA:3.20.20.220 336 615 1.3E-66 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 SUPERFAMILY SSF51730 330 615 5.89E-72 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 Pfam PF02574 Homocysteine S-methyltransferase 14 291 6.0E-66 T 22-04-2016 IPR003726 Homocysteine-binding domain TRD_RS04840 086bc421e4a0b9310952c085a67ddb7c 624 Gene3D G3DSA:3.20.20.330 1 335 1.7E-106 T 22-04-2016 IPR003726 Homocysteine-binding domain TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 SMART SM00448 28 141 1.3E-37 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 SUPERFAMILY SSF46894 163 238 3.16E-21 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 ProSitePatterns PS00622 LuxR-type HTH domain signature. 191 218 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 Gene3D G3DSA:1.10.10.10 181 237 2.9E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 PANTHER PTHR26402 28 237 2.1E-87 T 22-04-2016 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 Pfam PF00072 Response regulator receiver domain 30 141 7.9E-34 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 SMART SM00421 174 231 2.1E-22 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 Gene3D G3DSA:3.40.50.2300 26 180 6.7E-44 T 22-04-2016 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 8.5E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 8.5E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 8.5E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 PANTHER PTHR26402:SF151 28 237 2.1E-87 T 22-04-2016 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 177 231 1.9E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS06415 267da6b471589af2fd44f9c10eede62b 246 SUPERFAMILY SSF52172 27 159 9.53E-40 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS00170 c50eaf75f18436d2463116f508cbed70 183 Gene3D G3DSA:3.30.930.10 4 173 4.2E-47 T 22-04-2016 TRD_RS00170 c50eaf75f18436d2463116f508cbed70 183 Pfam PF03099 Biotin/lipoate A/B protein ligase family 11 134 2.4E-11 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 TRD_RS00170 c50eaf75f18436d2463116f508cbed70 183 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 6 173 8.5E-34 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 TRD_RS00170 c50eaf75f18436d2463116f508cbed70 183 SUPERFAMILY SSF55681 3 174 2.63E-43 T 22-04-2016 TRD_RS00170 c50eaf75f18436d2463116f508cbed70 183 PANTHER PTHR12835 1 178 2.6E-37 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 TRD_RS00825 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Pfam PF13439 Glycosyltransferase Family 4 20 177 7.3E-17 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS00825 7d0a05e9237dc2d1f057cc0776bbf2e7 385 PANTHER PTHR12526:SF399 16 372 1.8E-69 T 22-04-2016 TRD_RS00825 7d0a05e9237dc2d1f057cc0776bbf2e7 385 SUPERFAMILY SSF53756 18 371 1.61E-85 T 22-04-2016 TRD_RS00825 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Pfam PF00534 Glycosyl transferases group 1 197 349 1.8E-37 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS00825 7d0a05e9237dc2d1f057cc0776bbf2e7 385 PANTHER PTHR12526 16 372 1.8E-69 T 22-04-2016 TRD_RS00825 7d0a05e9237dc2d1f057cc0776bbf2e7 385 Gene3D G3DSA:3.40.50.2000 160 350 2.0E-33 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 PANTHER PTHR11014 8 356 4.3E-102 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 Gene3D G3DSA:3.40.630.10 292 352 1.3E-48 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 Gene3D G3DSA:3.40.630.10 8 178 1.3E-48 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 PANTHER PTHR11014:SF65 8 356 4.3E-102 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 SUPERFAMILY SSF53187 9 160 3.43E-49 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 SUPERFAMILY SSF53187 269 352 3.43E-49 T 22-04-2016 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 TIGRFAM TIGR01902 dapE-lys-deAc: N-acetyl-ornithine/N-acetyl-lysine deacetylase 12 352 2.9E-93 T 22-04-2016 IPR010175 Acetyl-ornithine/Acetyl-lysine deacetylase GO:0005737|GO:0008270|GO:0009085|GO:0016811|GO:0050897 UniPathway: UPA00033 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 Pfam PF01546 Peptidase family M20/M25/M40 64 349 4.6E-29 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 TRD_RS07105 53b4e980c0f85f2e6d48efce6af43ed1 364 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 63 72 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 Gene3D G3DSA:3.90.76.10 79 233 3.7E-41 T 22-04-2016 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 Gene3D G3DSA:3.40.190.10 234 332 5.1E-31 T 22-04-2016 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 115 478 5.5E-81 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 Gene3D G3DSA:3.10.105.10 333 527 1.1E-31 T 22-04-2016 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 PIRSF PIRSF002741 37 536 1.8E-84 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 PANTHER PTHR30290 1 49 1.8E-104 T 22-04-2016 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 PANTHER PTHR30290 69 545 1.8E-104 T 22-04-2016 TRD_RS07825 eeb92b16a7538a62c36abda915add1e0 564 SUPERFAMILY SSF53850 66 544 5.27E-112 T 22-04-2016 TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 Gene3D G3DSA:3.40.50.300 443 522 5.6E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 SUPERFAMILY SSF52540 290 325 2.17E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 SUPERFAMILY SSF52540 1 203 2.17E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 SUPERFAMILY SSF52540 354 519 2.17E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 PIRSF PIRSF003128 1 569 1.5E-176 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 564 3.2E-170 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 519 9.5E-20 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 PANTHER PTHR11059 2 573 3.9E-163 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 TRD_RS02115 69a977631f1e2f7389685d4cfefec874 580 Gene3D G3DSA:3.40.50.300 1 210 1.4E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 4.1E-31 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 PANTHER PTHR10909 1 379 1.3E-148 T 22-04-2016 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 Gene3D G3DSA:2.40.110.10 120 214 1.2E-37 T 22-04-2016 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 PIRSF PIRSF016578 2 381 3.3E-16 T 22-04-2016 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 Gene3D G3DSA:1.10.540.10 2 117 1.9E-37 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 SUPERFAMILY SSF56645 2 236 1.96E-76 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 SUPERFAMILY SSF47203 225 380 3.22E-56 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 Gene3D G3DSA:1.20.140.10 215 380 5.8E-68 T 22-04-2016 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 226 374 6.9E-53 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 333 352 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 TRD_RS06295 5c358c05052719a9e31fe65d9e877100 391 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 5.4E-27 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 ProSitePatterns PS01058 SAICAR synthetase signature 2. 204 212 - T 22-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 SUPERFAMILY SSF56104 7 292 2.09E-99 T 22-04-2016 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 Pfam PF01259 SAICAR synthetase 19 266 1.7E-94 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 PANTHER PTHR11609:SF6 1 301 2.4E-110 T 22-04-2016 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 20 291 1.1E-70 T 22-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 15 291 24.611 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 Gene3D G3DSA:3.30.470.20 119 247 1.5E-49 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 Gene3D G3DSA:3.30.200.20 6 118 4.3E-39 T 22-04-2016 TRD_RS03405 93b1bb9a770f39045b27aa75a9c0b16e 302 PANTHER PTHR11609 1 301 2.4E-110 T 22-04-2016 TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 218 8.4E-20 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 PANTHER PTHR30522:SF0 4 445 6.9E-86 T 22-04-2016 IPR011551 NTP pyrophosphohydrolase MazG TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 TIGRFAM TIGR00444 mazG: MazG family protein 248 389 3.4E-53 T 22-04-2016 IPR011551 NTP pyrophosphohydrolase MazG TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Gene3D G3DSA:3.40.1010.10 5 120 1.2E-7 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 SUPERFAMILY SSF53790 6 272 3.49E-21 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 PANTHER PTHR30522 4 445 6.9E-86 T 22-04-2016 TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 SUPERFAMILY SSF101386 243 341 1.83E-23 T 22-04-2016 TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 264 337 6.0E-28 T 22-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core TRD_RS03910 ed6fa9dbfbf88f26d6ccdb58c2230066 456 Gene3D G3DSA:1.10.287.1080 257 309 6.6E-9 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Gene3D G3DSA:3.30.300.30 516 622 6.8E-25 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 ProSitePatterns PS00455 Putative AMP-binding domain signature. 262 273 - T 22-04-2016 IPR020845 AMP-binding, conserved site TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 1.1E-20 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Pfam PF00501 AMP-binding enzyme 93 519 6.1E-76 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 31 84 1.7E-7 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 SUPERFAMILY SSF56801 21 634 2.49E-158 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Gene3D G3DSA:3.40.50.980 268 424 1.1E-21 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 PANTHER PTHR24095 30 636 1.8E-262 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Gene3D G3DSA:2.30.38.10 439 513 3.8E-10 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 PANTHER PTHR24095:SF184 30 636 1.8E-262 T 22-04-2016 TRD_RS05295 7db58b1d6719f9246020ef0317db5e4d 654 Gene3D G3DSA:3.40.50.980 93 267 1.3E-35 T 22-04-2016 TRD_RS05525 129092477e325692f2951255e1ba8124 433 SUPERFAMILY SSF56059 102 313 1.36E-58 T 22-04-2016 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Gene3D G3DSA:3.30.470.20 189 318 9.1E-56 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS05525 129092477e325692f2951255e1ba8124 433 SMART SM01209 101 293 7.1E-123 T 22-04-2016 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 330 416 4.4E-28 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 PANTHER PTHR10520 1 416 4.2E-233 T 22-04-2016 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Gene3D G3DSA:3.30.1490.20 121 188 2.0E-21 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Gene3D G3DSA:3.90.600.10 329 417 3.0E-32 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 420 40.8 T 22-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Gene3D G3DSA:3.40.50.20 3 93 1.3E-36 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS05525 129092477e325692f2951255e1ba8124 433 SUPERFAMILY SSF52440 2 100 2.01E-33 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS05525 129092477e325692f2951255e1ba8124 433 SUPERFAMILY SSF51246 328 417 1.31E-27 T 22-04-2016 IPR011054 Rudiment single hybrid motif TRD_RS05525 129092477e325692f2951255e1ba8124 433 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 2.2E-33 T 22-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 419 7.7E-159 T 22-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 9.9E-74 T 22-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 22-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS05525 129092477e325692f2951255e1ba8124 433 SMART SM01210 328 420 3.3E-46 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PANTHER PTHR22773 1 578 1.1E-249 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 2.0E-25 T 22-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 6.8E-14 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 6.8E-14 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 416 438 6.8E-14 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 6.8E-14 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 9 623 2.8E-226 T 22-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 Pfam PF00361 Proton-conducting membrane transporter 136 424 1.1E-83 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 4.1E-65 T 22-04-2016 TRD_RS08345 cbba99cb70c2a12aad402ba0eb8b54cf 633 PANTHER PTHR22773:SF50 1 578 1.1E-249 T 22-04-2016 TRD_RS02830 5318b3f479c65d1fe4907757d406c4a1 293 Gene3D G3DSA:3.90.550.10 19 246 2.4E-31 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS02830 5318b3f479c65d1fe4907757d406c4a1 293 Pfam PF00535 Glycosyl transferase family 2 20 145 1.2E-32 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS02830 5318b3f479c65d1fe4907757d406c4a1 293 SUPERFAMILY SSF53448 17 244 2.13E-44 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS02830 5318b3f479c65d1fe4907757d406c4a1 293 PANTHER PTHR10859 1 288 7.6E-61 T 22-04-2016 TRD_RS13745 cab91c24dbcd105c024c94f10ed089c4 131 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 22-04-2016 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site TRD_RS13745 cab91c24dbcd105c024c94f10ed089c4 131 Hamap MF_00213 Probable hydrogenase nickel incorporation protein HypA [hypA]. 1 129 20.866 T 22-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 TRD_RS13745 cab91c24dbcd105c024c94f10ed089c4 131 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 127 5.0E-26 T 22-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 TRD_RS13745 cab91c24dbcd105c024c94f10ed089c4 131 PIRSF PIRSF004761 1 130 2.3E-24 T 22-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 TRD_RS13745 cab91c24dbcd105c024c94f10ed089c4 131 PANTHER PTHR34535 2 131 6.9E-27 T 22-04-2016 TRD_RS02330 d8f60316d0b7a2fdc9e8dd973fb6715a 171 Gene3D G3DSA:3.40.50.960 11 162 4.3E-67 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02330 d8f60316d0b7a2fdc9e8dd973fb6715a 171 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 22 157 1.7E-56 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02330 d8f60316d0b7a2fdc9e8dd973fb6715a 171 SUPERFAMILY SSF52121 12 161 2.09E-62 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02330 d8f60316d0b7a2fdc9e8dd973fb6715a 171 PANTHER PTHR21058 8 167 6.3E-82 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02330 d8f60316d0b7a2fdc9e8dd973fb6715a 171 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 16 161 31.617 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02330 d8f60316d0b7a2fdc9e8dd973fb6715a 171 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 21 158 4.3E-59 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS05775 3594813386e81bd2a056d231ad1ef93e 213 SUPERFAMILY SSF56281 4 183 1.94E-24 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS05775 3594813386e81bd2a056d231ad1ef93e 213 Pfam PF13483 Beta-lactamase superfamily domain 3 161 9.8E-49 T 22-04-2016 TRD_RS05775 3594813386e81bd2a056d231ad1ef93e 213 Gene3D G3DSA:3.60.15.10 3 205 2.3E-41 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS05775 3594813386e81bd2a056d231ad1ef93e 213 PANTHER PTHR39189 1 212 4.5E-38 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 SUPERFAMILY SSF58104 205 313 2.09E-7 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PANTHER PTHR32089 593 611 8.3E-90 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PANTHER PTHR32089 294 550 8.3E-90 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PANTHER PTHR32089 99 237 8.3E-90 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 329 358 9.5E-24 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 430 9.5E-24 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 64 89 9.5E-24 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 432 461 9.5E-24 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 Gene3D G3DSA:1.10.287.950 320 526 5.2E-54 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 Gene3D G3DSA:1.10.287.950 213 292 5.2E-4 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 Gene3D G3DSA:1.10.287.950 527 599 9.4E-4 T 22-04-2016 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 360 563 6.4E-45 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 SMART SM00283 305 580 6.9E-64 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS04795 60086730dd1e21ce51d38ea4823131c0 661 SUPERFAMILY SSF58104 311 576 5.23E-62 T 22-04-2016 TRD_RS05810 a5fc99fbe4ed3bce56f535899be7284c 216 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 45 67 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 TRD_RS05810 a5fc99fbe4ed3bce56f535899be7284c 216 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 67 6.2E-11 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 Gene3D G3DSA:3.90.79.10 43 166 2.5E-36 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 PRINTS PR00502 NUDIX hydrolase family signature 85 100 3.7E-8 T 22-04-2016 IPR020476 NUDIX hydrolase TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 PRINTS PR00502 NUDIX hydrolase family signature 71 85 3.7E-8 T 22-04-2016 IPR020476 NUDIX hydrolase TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 SUPERFAMILY SSF55811 10 166 6.36E-41 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 ProSitePatterns PS00893 Nudix box signature. 76 97 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 Pfam PF00293 NUDIX domain 44 160 1.7E-20 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 TRD_RS05665 d4a059080eeddcb0b06650a3fcfb5372 169 PANTHER PTHR22769 1 163 6.2E-39 T 22-04-2016 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PANTHER PTHR10264 7 251 5.3E-122 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 199 222 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 111 128 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 29 51 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 76 97 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 174 195 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 155 173 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PRINTS PR00721 Stomatin signature 131 154 8.8E-71 T 22-04-2016 IPR001972 Stomatin family GO:0016020 TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 SUPERFAMILY SSF117892 53 186 8.11E-45 T 22-04-2016 IPR001107 Band 7 domain TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 Pfam PF01145 SPFH domain / Band 7 family 26 195 2.7E-37 T 22-04-2016 IPR001107 Band 7 domain TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 SMART SM00244 22 179 9.3E-67 T 22-04-2016 IPR001107 Band 7 domain TRD_RS05930 a60f565817ad67a6bfd0f2856ee0a160 265 PANTHER PTHR10264:SF60 7 251 5.3E-122 T 22-04-2016 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 SUPERFAMILY SSF54690 85 218 1.01E-49 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 3 81 2.8E-20 T 22-04-2016 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 UniPathway: UPA00344 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 Pfam PF02597 ThiS family 5 81 1.2E-20 T 22-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 PANTHER PTHR23404:SF2 43 218 2.5E-64 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 Gene3D G3DSA:3.90.1170.40 86 218 1.4E-54 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 PANTHER PTHR23404 43 218 2.5E-64 T 22-04-2016 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 Pfam PF02391 MoaE protein 90 198 1.4E-44 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 Gene3D G3DSA:3.10.20.30 1 81 1.5E-25 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 SUPERFAMILY SSF54285 1 79 1.37E-21 T 22-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp TRD_RS08000 7bb42982e161f145a1ddc43937b9faac 237 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 3 81 1.0E-15 T 22-04-2016 IPR010038 MoaD, archaeal-type TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 219 255 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 390 40.584 T 22-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 Pfam PF00202 Aminotransferase class-III 26 389 6.7E-114 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 Gene3D G3DSA:3.40.640.10 60 285 1.1E-88 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 PANTHER PTHR11986 5 395 1.9E-166 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 Gene3D G3DSA:3.90.1150.10 286 392 1.3E-36 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS07080 af114b4a0fa359d1e32abe2be85b5833 395 SUPERFAMILY SSF53383 21 390 5.03E-127 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 PANTHER PTHR30627 20 130 2.0E-176 T 22-04-2016 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 PANTHER PTHR30627:SF2 20 130 2.0E-176 T 22-04-2016 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 PANTHER PTHR30627:SF2 541 747 2.0E-176 T 22-04-2016 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 PANTHER PTHR30627 541 747 2.0E-176 T 22-04-2016 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 SUPERFAMILY SSF56601 347 514 1.79E-88 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 SUPERFAMILY SSF56601 541 749 1.79E-88 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 Pfam PF03717 Penicillin-binding Protein dimerisation domain 80 330 1.1E-32 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 PANTHER PTHR30627 194 514 2.0E-176 T 22-04-2016 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 PANTHER PTHR30627:SF2 194 514 2.0E-176 T 22-04-2016 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 SUPERFAMILY SSF56519 211 345 9.42E-33 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 SUPERFAMILY SSF56519 75 138 9.42E-33 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 Gene3D G3DSA:3.40.710.10 346 748 1.4E-102 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 220 748 3.0E-141 T 22-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 Pfam PF00905 Penicillin binding protein transpeptidase domain 381 743 2.4E-69 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 TRD_RS09000 4e46cf4ae5ed43a7083672cecfb786bb 758 Gene3D G3DSA:3.90.1310.10 220 345 3.0E-28 T 22-04-2016 TRD_RS08600 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 Gene3D G3DSA:1.10.3720.10 92 300 6.8E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08600 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 3.0E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08600 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 PANTHER PTHR30465 1 304 7.8E-107 T 22-04-2016 TRD_RS08600 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 SUPERFAMILY SSF161098 93 289 3.71E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08600 26c7d7d6eab8abcf5f2a75afcd37a1ae 306 PANTHER PTHR30465:SF0 1 304 7.8E-107 T 22-04-2016 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 Pfam PF01144 Coenzyme A transferase 6 217 5.4E-58 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 17 32 - T 22-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 PANTHER PTHR13707 1 220 8.2E-82 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 Gene3D G3DSA:3.40.1080.10 4 217 1.0E-78 T 22-04-2016 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 SUPERFAMILY SSF100950 2 222 2.04E-71 T 22-04-2016 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 218 1.1E-85 T 22-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 TRD_RS01425 5bfef518fa6b3cf717c9fd4145e19c9b 232 SMART SM00882 5 218 2.8E-65 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 PANTHER PTHR33221:SF1 2 135 9.5E-51 T 22-04-2016 TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 22-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 PANTHER PTHR33221 2 135 9.5E-51 T 22-04-2016 TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 SUPERFAMILY SSF46785 2 136 7.48E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 Pfam PF02082 Transcriptional regulator 1 82 9.5E-26 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 134 4.8E-37 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type TRD_RS07650 b8f2f515db1c7e24e8152d19b1e02321 146 Gene3D G3DSA:1.10.10.10 1 139 2.9E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 121 2.2E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 172 200 2.2E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 31 58 2.2E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 121 147 2.2E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 PANTHER PTHR30371:SF0 5 254 5.7E-75 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 Pfam PF00902 Sec-independent protein translocase protein (TatC) 34 240 1.6E-59 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 32 245 3.6E-56 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 PANTHER PTHR30371 5 254 5.7E-75 T 22-04-2016 TRD_RS07560 0aea88e81390768ed35a10c219f587a9 258 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 23 257 18.148 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 TRD_RS05040 7aebf08e2fbf06ad937709713ef17620 56 Pfam PF00468 Ribosomal protein L34 3 45 2.2E-23 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05040 7aebf08e2fbf06ad937709713ef17620 56 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 2 45 14.633 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05040 7aebf08e2fbf06ad937709713ef17620 56 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 45 3.4E-21 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05040 7aebf08e2fbf06ad937709713ef17620 56 PANTHER PTHR14503 1 47 2.4E-24 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05040 7aebf08e2fbf06ad937709713ef17620 56 ProSitePatterns PS00784 Ribosomal protein L34 signature. 3 22 - T 22-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05040 7aebf08e2fbf06ad937709713ef17620 56 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 3 31 1.0E-6 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS00175 4e013cb99844fdb56b820a2a18ac4042 559 SUPERFAMILY SSF51679 190 526 1.2E-53 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS00175 4e013cb99844fdb56b820a2a18ac4042 559 PANTHER PTHR30011:SF27 201 522 8.6E-53 T 22-04-2016 TRD_RS00175 4e013cb99844fdb56b820a2a18ac4042 559 Gene3D G3DSA:3.20.20.30 193 529 8.1E-60 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS00175 4e013cb99844fdb56b820a2a18ac4042 559 PANTHER PTHR30011 201 522 8.6E-53 T 22-04-2016 TRD_RS00175 4e013cb99844fdb56b820a2a18ac4042 559 Pfam PF00296 Luciferase-like monooxygenase 194 521 6.1E-55 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS05410 fb14403dac561e6cd57d69a32ab60e96 392 PANTHER PTHR22916 49 374 3.8E-20 T 22-04-2016 TRD_RS05410 fb14403dac561e6cd57d69a32ab60e96 392 PANTHER PTHR22916:SF36 49 374 3.8E-20 T 22-04-2016 TRD_RS05410 fb14403dac561e6cd57d69a32ab60e96 392 SUPERFAMILY SSF53448 47 255 3.43E-26 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05410 fb14403dac561e6cd57d69a32ab60e96 392 Pfam PF13641 Glycosyltransferase like family 2 50 254 1.3E-16 T 22-04-2016 TRD_RS05410 fb14403dac561e6cd57d69a32ab60e96 392 Gene3D G3DSA:3.90.550.10 52 274 2.3E-18 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 Gene3D G3DSA:1.10.8.300 200 306 1.4E-38 T 22-04-2016 TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 PANTHER PTHR11603 1 313 2.0E-134 T 22-04-2016 TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 168 2.3E-64 T 22-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 SUPERFAMILY SSF52540 5 282 1.61E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 PIRSF PIRSF002849 1 312 2.8E-136 T 22-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 Gene3D G3DSA:3.40.50.300 20 184 5.9E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03215 710022a03c9ea9c1f338d62ee5ba3037 333 SMART SM00382 35 176 0.0013 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 Pfam PF02464 Competence-damaged protein 314 390 7.4E-6 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 2 338 2.8E-73 T 22-04-2016 IPR008135 Competence-induced protein CinA TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 Pfam PF00994 Probable molybdopterin binding domain 5 168 1.2E-35 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 PANTHER PTHR13939:SF0 1 401 1.5E-107 T 22-04-2016 TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 PIRSF PIRSF006728 1 399 2.9E-99 T 22-04-2016 IPR008135 Competence-induced protein CinA TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 406 107.185 T 22-04-2016 IPR008135 Competence-induced protein CinA TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 Gene3D G3DSA:3.90.950.20 314 394 7.5E-7 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 SUPERFAMILY SSF53218 2 201 2.36E-37 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 Gene3D G3DSA:3.40.980.10 2 203 1.7E-30 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 PANTHER PTHR13939 1 401 1.5E-107 T 22-04-2016 TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 SUPERFAMILY SSF142433 249 393 8.37E-11 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS06035 2e4bf3416d005365e85d30bd8b9a5821 406 SMART SM00852 4 171 4.2E-38 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 Pfam PF00266 Aminotransferase class-V 6 369 5.6E-85 T 22-04-2016 IPR000192 Aminotransferase class V domain TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 PIRSF PIRSF005572 3 385 3.4E-142 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 6 385 5.9E-161 T 22-04-2016 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 Gene3D G3DSA:3.40.640.10 17 251 1.8E-93 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 PANTHER PTHR11601:SF38 6 384 5.7E-184 T 22-04-2016 TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 PANTHER PTHR11601 6 384 5.7E-184 T 22-04-2016 TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 2 388 48.476 T 22-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 SUPERFAMILY SSF53383 6 379 1.71E-113 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS07645 4ec472d58a011254cbf9eec574ebc1b1 390 Gene3D G3DSA:3.90.1150.10 252 376 1.2E-49 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS08620 d9429b1115f541d8b770dd5f0dc4c28e 189 Gene3D G3DSA:3.90.1570.10 9 187 1.1E-15 T 22-04-2016 IPR012296 Nuclease, putative, TT1808 TRD_RS08620 d9429b1115f541d8b770dd5f0dc4c28e 189 Pfam PF05685 Putative restriction endonuclease 14 183 4.0E-31 T 22-04-2016 IPR008538 Domain of unknown function DUF820 TRD_RS08620 d9429b1115f541d8b770dd5f0dc4c28e 189 PANTHER PTHR35400 1 187 3.8E-44 T 22-04-2016 TRD_RS08620 d9429b1115f541d8b770dd5f0dc4c28e 189 SUPERFAMILY SSF52980 8 186 8.58E-18 T 22-04-2016 IPR011335 Restriction endonuclease type II-like TRD_RS08620 d9429b1115f541d8b770dd5f0dc4c28e 189 PANTHER PTHR35400:SF1 1 187 3.8E-44 T 22-04-2016 TRD_RS05940 03ddb0d80f1ad4c2d59aefd2fb3a4a6b 285 PANTHER PTHR31756:SF3 11 274 3.6E-99 T 22-04-2016 TRD_RS05940 03ddb0d80f1ad4c2d59aefd2fb3a4a6b 285 PANTHER PTHR31756 11 274 3.6E-99 T 22-04-2016 TRD_RS05940 03ddb0d80f1ad4c2d59aefd2fb3a4a6b 285 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 9 273 50.877 T 22-04-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein TRD_RS05940 03ddb0d80f1ad4c2d59aefd2fb3a4a6b 285 Pfam PF03618 Kinase/pyrophosphorylase 11 266 4.0E-88 T 22-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 Gene3D G3DSA:2.30.130.10 1 71 3.1E-26 T 22-04-2016 IPR015947 PUA-like domain TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 Gene3D G3DSA:3.30.750.80 73 178 8.8E-33 T 22-04-2016 TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 PANTHER PTHR11061:SF12 14 395 5.7E-110 T 22-04-2016 TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 SMART SM00359 2 87 2.2E-10 T 22-04-2016 IPR002478 PUA domain GO:0003723 TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 Gene3D G3DSA:3.40.50.150 184 394 3.1E-55 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 175 375 5.8E-27 T 22-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 PANTHER PTHR11061 14 395 5.7E-110 T 22-04-2016 TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 SUPERFAMILY SSF88697 1 71 4.2E-18 T 22-04-2016 IPR015947 PUA-like domain TRD_RS08365 26040cf50bf9575b8d112a5621f408db 395 SUPERFAMILY SSF53335 78 391 3.21E-69 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS08085 b55f706133872e005a090fac5910248c 285 SMART SM00481 4 69 2.9E-22 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 TRD_RS08085 b55f706133872e005a090fac5910248c 285 SUPERFAMILY SSF89550 156 249 9.03E-44 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS08085 b55f706133872e005a090fac5910248c 285 SUPERFAMILY SSF89550 4 87 9.03E-44 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS08085 b55f706133872e005a090fac5910248c 285 PANTHER PTHR30007 4 247 3.6E-60 T 22-04-2016 TRD_RS08085 b55f706133872e005a090fac5910248c 285 Pfam PF02811 PHP domain 5 120 1.9E-10 T 22-04-2016 IPR004013 PHP domain GO:0003824 TRD_RS08085 b55f706133872e005a090fac5910248c 285 PANTHER PTHR30007:SF4 4 247 3.6E-60 T 22-04-2016 TRD_RS08085 b55f706133872e005a090fac5910248c 285 Gene3D G3DSA:3.20.20.140 4 87 3.7E-41 T 22-04-2016 TRD_RS08085 b55f706133872e005a090fac5910248c 285 Gene3D G3DSA:3.20.20.140 156 248 3.7E-41 T 22-04-2016 TRD_RS00555 4b5ef21d49ca1eae34881d1de0762ea1 110 PANTHER PTHR34068:SF1 5 110 1.3E-40 T 22-04-2016 TRD_RS00555 4b5ef21d49ca1eae34881d1de0762ea1 110 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 5 110 25.552 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 TRD_RS00555 4b5ef21d49ca1eae34881d1de0762ea1 110 Pfam PF01906 Putative heavy-metal-binding 6 110 1.9E-40 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 TRD_RS00555 4b5ef21d49ca1eae34881d1de0762ea1 110 SUPERFAMILY SSF117782 6 110 5.49E-38 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 TRD_RS00555 4b5ef21d49ca1eae34881d1de0762ea1 110 PANTHER PTHR34068 5 110 1.3E-40 T 22-04-2016 TRD_RS00555 4b5ef21d49ca1eae34881d1de0762ea1 110 Gene3D G3DSA:3.30.110.70 6 110 6.4E-39 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 26 583 2.7E-210 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 122 170 8.8E-13 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.930.10 193 483 3.2E-112 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 487 499 1.9E-50 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 314 337 1.9E-50 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 417 445 1.9E-50 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 460 473 1.9E-50 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PRINTS PR01047 Threonyl-tRNA synthetase signature 281 309 1.9E-50 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PANTHER PTHR11451:SF5 22 593 1.2E-270 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 SUPERFAMILY SSF55186 23 192 3.27E-63 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.980.10 23 83 3.6E-37 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.980.10 139 175 3.6E-37 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 SUPERFAMILY SSF52954 483 587 3.02E-31 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.40.50.800 484 592 8.2E-36 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 PANTHER PTHR11451 22 593 1.2E-270 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Pfam PF03129 Anticodon binding domain 494 583 2.2E-24 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 20 587 33.592 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Gene3D G3DSA:3.30.54.20 86 138 2.9E-23 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 SMART SM00863 121 170 3.8E-23 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 SUPERFAMILY SSF55681 194 479 1.27E-85 T 22-04-2016 TRD_RS04930 28d540550ad2546fb0e51e1d32f7caff 596 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 275 481 1.5E-34 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS08935 0c9dae10877da048f36db1d830f4cbaa 271 Gene3D G3DSA:3.20.20.30 107 250 1.3E-9 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08935 0c9dae10877da048f36db1d830f4cbaa 271 Gene3D G3DSA:3.20.20.30 8 104 3.2E-15 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08935 0c9dae10877da048f36db1d830f4cbaa 271 SUPERFAMILY SSF51679 7 229 3.7E-24 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08935 0c9dae10877da048f36db1d830f4cbaa 271 Pfam PF00296 Luciferase-like monooxygenase 118 244 1.2E-6 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08935 0c9dae10877da048f36db1d830f4cbaa 271 Pfam PF00296 Luciferase-like monooxygenase 11 103 9.1E-13 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 Gene3D G3DSA:3.30.70.1380 250 330 8.8E-25 T 22-04-2016 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 PANTHER PTHR36566 2 398 2.2E-91 T 22-04-2016 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 Hamap MF_01074 UPF0272 protein . 1 391 39.615 T 22-04-2016 IPR002822 Uncharacterised protein family UPF0272 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 Gene3D G3DSA:3.10.20.300 331 400 2.1E-15 T 22-04-2016 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 PANTHER PTHR36566:SF1 2 398 2.2E-91 T 22-04-2016 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 3 379 1.2E-100 T 22-04-2016 IPR002822 Uncharacterised protein family UPF0272 TRD_RS01480 fcefb27bd33df258fc8886b4cf672dc1 406 Pfam PF01969 Protein of unknown function DUF111 5 379 3.8E-130 T 22-04-2016 IPR002822 Uncharacterised protein family UPF0272 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 Hamap MF_01454 GTPase Obg [obg]. 1 333 48.605 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 SUPERFAMILY SSF52540 160 341 4.04E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 Gene3D G3DSA:2.70.210.12 1 155 9.6E-61 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 3.6E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 229 247 3.6E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 212 227 3.6E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 3.6E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 Pfam PF01018 GTP1/OBG 2 157 1.1E-63 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 Pfam PF09269 Domain of unknown function (DUF1967) 367 428 2.3E-14 T 22-04-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 Gene3D G3DSA:3.40.50.300 159 334 2.4E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 Pfam PF01926 50S ribosome-binding GTPase 160 286 1.5E-21 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 332 4.4E-136 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 SUPERFAMILY SSF82051 1 157 9.94E-57 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PANTHER PTHR11702:SF3 457 464 8.2E-160 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PANTHER PTHR11702:SF3 2 341 8.2E-160 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 SUPERFAMILY SSF102741 359 430 6.41E-15 T 22-04-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 363 429 8.3E-14 T 22-04-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PANTHER PTHR11702 457 464 8.2E-160 T 22-04-2016 TRD_RS08015 3686a703a22df383f7d78112fcb43077 467 PANTHER PTHR11702 2 341 8.2E-160 T 22-04-2016 TRD_RS03005 c4869fdc050fff4ab5151f8db02a9791 370 SUPERFAMILY SSF53756 8 363 2.04E-69 T 22-04-2016 TRD_RS03005 c4869fdc050fff4ab5151f8db02a9791 370 PANTHER PTHR30160 7 370 2.5E-43 T 22-04-2016 TRD_RS03005 c4869fdc050fff4ab5151f8db02a9791 370 Gene3D G3DSA:3.40.50.2000 173 363 9.2E-46 T 22-04-2016 TRD_RS03005 c4869fdc050fff4ab5151f8db02a9791 370 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 79 302 3.6E-31 T 22-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 TRD_RS03005 c4869fdc050fff4ab5151f8db02a9791 370 PANTHER PTHR30160:SF7 7 370 2.5E-43 T 22-04-2016 TRD_RS03005 c4869fdc050fff4ab5151f8db02a9791 370 Gene3D G3DSA:3.40.50.2000 8 159 8.1E-25 T 22-04-2016 TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 Gene3D G3DSA:3.40.50.150 21 221 4.8E-65 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 PANTHER PTHR11727 26 293 9.3E-91 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 36 292 50.058 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 SMART SM00650 52 220 2.3E-73 T 22-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 68 95 - T 22-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 Gene3D G3DSA:1.10.8.100 228 293 3.4E-20 T 22-04-2016 IPR023165 rRNA adenine dimethylase-like TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 36 289 2.3E-76 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 SUPERFAMILY SSF53335 35 293 2.5E-69 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS06125 e133eb9314d4c541d1fc34538c01dbf5 297 Pfam PF00398 Ribosomal RNA adenine dimethylase 39 290 2.6E-55 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm TRD_RS02290 d03bec38cda7f47d1b509728abcb868a 386 PANTHER PTHR21631 37 336 2.6E-62 T 22-04-2016 TRD_RS02290 d03bec38cda7f47d1b509728abcb868a 386 Gene3D G3DSA:3.20.20.60 33 359 3.0E-79 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS02290 d03bec38cda7f47d1b509728abcb868a 386 SUPERFAMILY SSF51621 26 352 3.95E-76 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS02290 d03bec38cda7f47d1b509728abcb868a 386 Pfam PF13714 Phosphoenolpyruvate phosphomutase 39 313 2.3E-32 T 22-04-2016 TRD_RS01645 7a32731660a5cd1ac1b7e0d986766483 297 Pfam PF13432 Tetratricopeptide repeat 21 83 3.0E-8 T 22-04-2016 TRD_RS01645 7a32731660a5cd1ac1b7e0d986766483 297 SMART SM00028 49 82 4.2E-6 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS01645 7a32731660a5cd1ac1b7e0d986766483 297 SUPERFAMILY SSF48452 20 92 1.98E-14 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS01645 7a32731660a5cd1ac1b7e0d986766483 297 Gene3D G3DSA:1.25.40.10 26 92 5.4E-15 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 5 615 5.3E-257 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Pfam PF02779 Transketolase, pyrimidine binding domain 310 469 8.6E-42 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Gene3D G3DSA:3.40.50.920 485 614 2.7E-41 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Gene3D G3DSA:3.40.50.970 292 474 2.8E-73 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52518 308 496 9.64E-62 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 PANTHER PTHR11624 237 627 4.7E-302 T 22-04-2016 IPR033247 Transketolase family TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 PANTHER PTHR11624 16 211 4.7E-302 T 22-04-2016 IPR033247 Transketolase family TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52518 239 371 8.29E-84 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52518 3 192 8.29E-84 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 ProSitePatterns PS00801 Transketolase signature 1. 28 48 - T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Pfam PF02780 Transketolase, C-terminal domain 486 607 2.0E-33 T 22-04-2016 IPR033248 Transketolase, C-terminal domain TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Gene3D G3DSA:3.40.50.970 3 188 3.5E-62 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Gene3D G3DSA:3.40.50.970 235 291 3.5E-62 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 2 616 45.623 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 SMART SM00861 309 474 2.7E-74 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 SUPERFAMILY SSF52922 482 614 1.7E-38 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 3 278 2.4E-120 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 PANTHER PTHR11624:SF20 237 627 4.7E-302 T 22-04-2016 TRD_RS05970 0335bc6d6d033ca2a798f60b8f7cf143 629 PANTHER PTHR11624:SF20 16 211 4.7E-302 T 22-04-2016 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 Pfam PF01266 FAD dependent oxidoreductase 10 356 7.3E-64 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 SUPERFAMILY SSF54373 230 317 1.47E-13 T 22-04-2016 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.30.9.10 229 268 8.0E-7 T 22-04-2016 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.30.9.10 97 149 8.0E-7 T 22-04-2016 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 PANTHER PTHR13847:SF180 1 381 2.0E-79 T 22-04-2016 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 11 359 3.4E-80 T 22-04-2016 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 UniPathway: UPA00060 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 PANTHER PTHR13847 1 381 2.0E-79 T 22-04-2016 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 SUPERFAMILY SSF51905 9 229 2.94E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 SUPERFAMILY SSF51905 318 376 2.94E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.50.50.60 318 376 1.6E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.50.50.60 9 88 1.6E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS09200 674a80a3c2d5ba492c44fc839bf0552e 381 Gene3D G3DSA:3.50.50.60 150 228 1.6E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 Pfam PF13344 Haloacid dehalogenase-like hydrolase 14 120 1.8E-24 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 PANTHER PTHR19288 1 280 1.9E-46 T 22-04-2016 TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 Gene3D G3DSA:3.40.50.1000 199 282 1.8E-32 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 Gene3D G3DSA:3.40.50.1000 31 88 1.8E-32 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 SUPERFAMILY SSF56784 11 270 6.11E-46 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 Pfam PF13242 HAD-hyrolase-like 198 269 1.1E-8 T 22-04-2016 TRD_RS07885 ed3f159e29b6b0b28e3aa16e140a9bad 285 Gene3D G3DSA:3.40.50.10410 89 198 9.4E-19 T 22-04-2016 IPR023215 Nitrophenylphosphatase-like domain TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 Gene3D G3DSA:3.40.718.10 4 341 1.8E-123 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 346 1.4E-93 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 240 259 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 PANTHER PTHR11835:SF37 1 351 6.0E-183 T 22-04-2016 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 SMART SM01329 5 347 2.5E-179 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 1 350 8.7E-160 T 22-04-2016 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 PANTHER PTHR11835 1 351 6.0E-183 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 TRD_RS06305 00ccbdb92e682bbb7bcf43976fedfad3 353 SUPERFAMILY SSF53659 2 351 1.59E-119 T 22-04-2016 TRD_RS11305 1076e34b5fbe3945daa283a57f3d96be 154 SUPERFAMILY SSF52402 50 149 5.07E-29 T 22-04-2016 TRD_RS11305 1076e34b5fbe3945daa283a57f3d96be 154 PANTHER PTHR23090 4 152 2.7E-33 T 22-04-2016 TRD_RS11305 1076e34b5fbe3945daa283a57f3d96be 154 Gene3D G3DSA:3.40.50.620 55 148 2.4E-30 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS11305 1076e34b5fbe3945daa283a57f3d96be 154 Pfam PF02540 NAD synthase 59 147 5.1E-26 T 22-04-2016 IPR022310 NAD/GMP synthase TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Gene3D G3DSA:3.30.70.870 397 470 1.1E-28 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SUPERFAMILY SSF54980 594 685 5.28E-29 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 PANTHER PTHR23115 6 176 9.0E-288 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 PANTHER PTHR23115 250 278 9.0E-288 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 PANTHER PTHR23115 294 683 9.0E-288 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Pfam PF00679 Elongation factor G C-terminus 591 677 4.4E-30 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 PANTHER PTHR23115:SF98 250 278 9.0E-288 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SMART SM00889 471 589 1.9E-69 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Pfam PF03764 Elongation factor G, domain IV 470 589 1.7E-45 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SUPERFAMILY SSF54211 473 590 6.83E-42 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Gene3D G3DSA:2.40.30.10 296 396 5.9E-31 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SUPERFAMILY SSF54980 393 470 6.47E-20 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 PANTHER PTHR23115:SF98 6 176 9.0E-288 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 PANTHER PTHR23115:SF98 294 683 9.0E-288 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Gene3D G3DSA:3.30.70.240 591 677 1.1E-30 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Gene3D G3DSA:3.30.230.10 475 590 4.5E-49 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Pfam PF00009 Elongation factor Tu GTP binding domain 8 276 1.1E-40 T 22-04-2016 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 152 1.1E-15 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Gene3D G3DSA:3.40.50.300 3 278 2.0E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SUPERFAMILY SSF52540 4 276 1.05E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Pfam PF14492 Elongation Factor G, domain II 395 466 1.5E-28 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 5 683 9.3E-207 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 Pfam PF03144 Elongation factor Tu domain 2 315 382 1.0E-8 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SUPERFAMILY SSF50447 263 394 2.99E-29 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS04915 cf9110aa78db474e96363d6322156dd3 692 SMART SM00838 591 679 1.4E-38 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS01915 66b6540988cea09defa17489ec77437d 302 SMART SM01130 1 288 3.2E-130 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 62.837 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 Pfam PF00701 Dihydrodipicolinate synthetase family 2 284 5.1E-84 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 22-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PANTHER PTHR12128 1 302 1.0E-117 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 1.4E-28 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 1.4E-28 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 1.4E-28 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 1.4E-28 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 SUPERFAMILY SSF51569 1 286 4.71E-98 T 22-04-2016 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PIRSF PIRSF001365 1 290 1.1E-87 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 Gene3D G3DSA:3.20.20.70 1 287 2.8E-112 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 285 1.0E-97 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS01915 66b6540988cea09defa17489ec77437d 302 PANTHER PTHR12128:SF34 1 302 1.0E-117 T 22-04-2016 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 Gene3D G3DSA:3.40.50.720 3 156 2.0E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 143 159 - T 22-04-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 SMART SM00859 4 140 1.4E-53 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 140 1.7E-32 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 SUPERFAMILY SSF55347 148 319 6.67E-37 T 22-04-2016 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 Gene3D G3DSA:3.30.360.10 157 319 6.3E-40 T 22-04-2016 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 351 8.9E-119 T 22-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 3 345 39.522 T 22-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 157 322 7.4E-9 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 PANTHER PTHR32338 3 351 5.1E-156 T 22-04-2016 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 PANTHER PTHR32338:SF8 3 351 5.1E-156 T 22-04-2016 TRD_RS07095 afb531a96045bdd410191dcb6966ad1d 352 SUPERFAMILY SSF51735 4 174 1.0E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 191 493 38.261 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 SUPERFAMILY SSF52096 1 211 2.13E-64 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 Pfam PF01039 Carboxyl transferase domain 33 418 1.6E-45 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 SUPERFAMILY SSF52096 236 492 1.38E-80 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PANTHER PTHR22855 1 499 6.5E-97 T 22-04-2016 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 Gene3D G3DSA:3.90.226.10 237 448 6.0E-45 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 Gene3D G3DSA:3.90.226.10 1 212 3.9E-58 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 97 115 1.3E-35 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 63 77 1.3E-35 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 184 193 1.3E-35 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 134 151 1.3E-35 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 174 1.3E-35 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS04060 7bed43c024d812f8c9bee3fbd1b0a059 541 PANTHER PTHR22855:SF17 1 499 6.5E-97 T 22-04-2016 TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 Gene3D G3DSA:3.40.190.10 248 350 8.0E-23 T 22-04-2016 TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 PIRSF PIRSF002741 32 577 6.8E-79 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 PANTHER PTHR30290 19 575 5.6E-107 T 22-04-2016 TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 123 490 1.3E-80 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 SUPERFAMILY SSF53850 78 575 1.99E-109 T 22-04-2016 TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 Gene3D G3DSA:3.90.76.10 90 247 3.9E-29 T 22-04-2016 TRD_RS06000 f6cccaa1d423ddc15a2309fdea709184 578 Gene3D G3DSA:3.10.105.10 351 541 1.1E-42 T 22-04-2016 TRD_RS07355 a96c7b06f3328a01a5cd3f78fbcc2f41 163 Pfam PF08239 Bacterial SH3 domain 103 158 2.4E-10 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS07355 a96c7b06f3328a01a5cd3f78fbcc2f41 163 SMART SM00287 93 159 2.9E-5 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS06455 709899a59e948211a92fb5e87156c337 324 Gene3D G3DSA:3.40.50.2020 163 289 7.0E-49 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS06455 709899a59e948211a92fb5e87156c337 324 SMART SM01400 8 124 4.9E-72 T 22-04-2016 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 22-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 8 316 45.524 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 Pfam PF14572 Phosphoribosyl synthetase-associated domain 208 316 1.0E-21 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 SUPERFAMILY SSF53271 73 306 1.09E-56 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS06455 709899a59e948211a92fb5e87156c337 324 Gene3D G3DSA:3.40.50.2020 7 162 4.5E-72 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS06455 709899a59e948211a92fb5e87156c337 324 PANTHER PTHR10210:SF41 1 321 7.8E-171 T 22-04-2016 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 9 313 6.3E-113 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 124 7.9E-45 T 22-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 TRD_RS06455 709899a59e948211a92fb5e87156c337 324 PANTHER PTHR10210 1 321 7.8E-171 T 22-04-2016 TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 SUPERFAMILY SSF46785 7 78 4.68E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 Pfam PF02629 CoA binding domain 82 178 3.3E-16 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 SUPERFAMILY SSF51735 82 205 2.31E-25 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 Gene3D G3DSA:3.40.50.720 77 210 1.1E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 Gene3D G3DSA:1.10.10.10 6 75 2.6E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 PANTHER PTHR35786 6 215 2.8E-86 T 22-04-2016 TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 1 209 33.984 T 22-04-2016 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 Pfam PF06971 Putative DNA-binding protein N-terminus 6 53 2.9E-20 T 22-04-2016 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 SMART SM00881 79 180 4.6E-12 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS02105 d9f3589f17fee6d7dbcc674a0e68a55f 237 PANTHER PTHR35786:SF1 6 215 2.8E-86 T 22-04-2016 TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 PANTHER PTHR32039 65 346 7.2E-103 T 22-04-2016 TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 Gene3D G3DSA:3.40.50.450 112 257 2.0E-12 T 22-04-2016 TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 Gene3D G3DSA:1.10.10.10 304 364 1.7E-4 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 71 286 5.2E-79 T 22-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 Pfam PF02481 DNA recombination-mediator protein A 72 276 9.5E-79 T 22-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 PANTHER PTHR32039:SF8 65 346 7.2E-103 T 22-04-2016 TRD_RS07485 78e4682d5e1c0aab71b7f1b721a883e8 367 SUPERFAMILY SSF102405 80 286 6.11E-44 T 22-04-2016 TRD_RS07850 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 Pfam PF01547 Bacterial extracellular solute-binding protein 98 360 3.1E-14 T 22-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 TRD_RS07850 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 SUPERFAMILY SSF53850 82 479 4.82E-43 T 22-04-2016 TRD_RS07850 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 Gene3D G3DSA:3.40.190.10 82 215 1.3E-11 T 22-04-2016 TRD_RS07850 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 Gene3D G3DSA:3.40.190.10 216 408 1.3E-25 T 22-04-2016 TRD_RS07850 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 PANTHER PTHR30061 7 43 7.5E-44 T 22-04-2016 TRD_RS07850 c6ab71e69dc2b93cdf881ba7f6cd19d1 485 PANTHER PTHR30061 75 480 7.5E-44 T 22-04-2016 TRD_RS04725 3b3cddca34fffb189fee11debe86f1e9 334 Gene3D G3DSA:1.10.600.10 17 333 2.6E-89 T 22-04-2016 IPR008949 Isoprenoid synthase domain TRD_RS04725 3b3cddca34fffb189fee11debe86f1e9 334 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 211 223 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 TRD_RS04725 3b3cddca34fffb189fee11debe86f1e9 334 Pfam PF00348 Polyprenyl synthetase 40 284 1.6E-61 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 TRD_RS04725 3b3cddca34fffb189fee11debe86f1e9 334 SUPERFAMILY SSF48576 11 333 1.3E-84 T 22-04-2016 IPR008949 Isoprenoid synthase domain TRD_RS04725 3b3cddca34fffb189fee11debe86f1e9 334 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 89 103 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 TRD_RS04725 3b3cddca34fffb189fee11debe86f1e9 334 PANTHER PTHR12001 17 334 1.0E-93 T 22-04-2016 IPR017446 Polyprenyl synthetase-related TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 Gene3D G3DSA:3.60.120.10 29 529 1.9E-177 T 22-04-2016 IPR005801 ADC synthase GO:0009058 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 SUPERFAMILY SSF56322 30 527 7.33E-164 T 22-04-2016 IPR005801 ADC synthase GO:0009058 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 40 525 6.7E-169 T 22-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 PANTHER PTHR11236 17 535 2.8E-243 T 22-04-2016 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 Pfam PF00425 chorismate binding enzyme 264 516 2.9E-100 T 22-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 PANTHER PTHR11236:SF9 17 535 2.8E-243 T 22-04-2016 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 Pfam PF04715 Anthranilate synthase component I, N terminal region 41 203 7.5E-36 T 22-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 458 472 3.42E-24 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 364 377 3.42E-24 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 473 487 3.42E-24 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS00490 25d83955e71b7807fea8c8f15233b537 539 PRINTS PR00095 Anthranilate synthase component I signature 378 391 3.42E-24 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS08675 f86776afd712ea1559ca1586d4459e50 76 PANTHER PTHR38455 2 69 5.1E-27 T 22-04-2016 TRD_RS08675 f86776afd712ea1559ca1586d4459e50 76 PANTHER PTHR38455:SF1 2 69 5.1E-27 T 22-04-2016 TRD_RS08675 f86776afd712ea1559ca1586d4459e50 76 Pfam PF06107 Bacterial protein of unknown function (DUF951) 5 58 2.6E-25 T 22-04-2016 IPR009296 Protein of unknown function DUF951 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 Gene3D G3DSA:3.30.43.10 34 87 1.4E-5 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 PANTHER PTHR11748:SF1 25 428 8.3E-89 T 22-04-2016 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 PANTHER PTHR11748 25 428 8.3E-89 T 22-04-2016 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 Gene3D G3DSA:3.30.465.10 91 211 2.8E-23 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 SUPERFAMILY SSF56176 27 211 5.14E-39 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 Gene3D G3DSA:1.10.45.10 403 427 5.3E-4 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 SUPERFAMILY SSF55103 214 429 5.89E-17 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 Pfam PF02913 FAD linked oxidases, C-terminal domain 402 426 2.5E-4 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 TRD_RS01230 4ace3ea03fcd0f17c4a811a58d8034bb 431 Pfam PF01565 FAD binding domain 35 172 1.2E-27 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 Gene3D G3DSA:3.40.50.10180 10 254 5.6E-76 T 22-04-2016 TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 SUPERFAMILY SSF82544 7 435 4.05E-121 T 22-04-2016 TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 PANTHER PTHR12227 1 435 3.6E-123 T 22-04-2016 TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 Pfam PF05161 MOFRL family 324 429 5.0E-32 T 22-04-2016 IPR007835 MOFRL domain TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 Gene3D G3DSA:3.40.1480.10 262 435 1.1E-54 T 22-04-2016 IPR007835 MOFRL domain TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 PANTHER PTHR12227:SF0 1 435 3.6E-123 T 22-04-2016 TRD_RS04745 05023b914126ec2f0fc54377e4138185 436 Pfam PF13660 Domain of unknown function (DUF4147) 10 249 5.8E-71 T 22-04-2016 IPR025286 MOFRL-associated domain TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 PIRSF PIRSF001123 3 349 4.5E-98 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 SUPERFAMILY SSF53187 5 82 3.67E-61 T 22-04-2016 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 SUPERFAMILY SSF53187 172 343 3.67E-61 T 22-04-2016 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 Gene3D G3DSA:2.40.30.40 74 159 7.1E-34 T 22-04-2016 IPR023367 Peptidase M42, domain 2 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 SUPERFAMILY SSF101821 70 177 6.87E-29 T 22-04-2016 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 PANTHER PTHR32481 1 353 1.1E-158 T 22-04-2016 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 PANTHER PTHR32481:SF10 1 353 1.1E-158 T 22-04-2016 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 Pfam PF05343 M42 glutamyl aminopeptidase 47 336 1.4E-84 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 Gene3D G3DSA:3.40.630.10 168 344 4.9E-74 T 22-04-2016 TRD_RS08645 ec258b59d1ec527125401f20ebffa83d 353 Gene3D G3DSA:3.40.630.10 4 73 4.9E-74 T 22-04-2016 TRD_RS04990 32bb3a60c714b4cd5f80e3808200059a 166 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 37.825 T 22-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 TRD_RS04990 32bb3a60c714b4cd5f80e3808200059a 166 Gene3D G3DSA:3.30.70.640 3 158 2.1E-70 T 22-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 TRD_RS04990 32bb3a60c714b4cd5f80e3808200059a 166 SUPERFAMILY SSF55040 11 155 3.27E-60 T 22-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 TRD_RS04990 32bb3a60c714b4cd5f80e3808200059a 166 PANTHER PTHR22960 1 158 5.4E-96 T 22-04-2016 TRD_RS04990 32bb3a60c714b4cd5f80e3808200059a 166 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 3.9E-67 T 22-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 TRD_RS04990 32bb3a60c714b4cd5f80e3808200059a 166 Pfam PF01967 MoaC family 15 150 1.8E-56 T 22-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 PANTHER PTHR10314 32 418 1.8E-130 T 22-04-2016 TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 101 115 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 Gene3D G3DSA:3.40.50.1100 196 386 1.7E-29 T 22-04-2016 TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 375 4.6E-74 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 Gene3D G3DSA:3.40.50.1100 110 195 2.4E-40 T 22-04-2016 TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 TIGRFAM TIGR00260 thrC: threonine synthase 57 382 3.6E-86 T 22-04-2016 IPR004450 Threonine synthase-like TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 SUPERFAMILY SSF53686 2 406 6.68E-108 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS05850 09142b865e6f86a3b435547bd16adb60 418 PANTHER PTHR10314:SF5 32 418 1.8E-130 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 131 496 5.6E-81 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 Gene3D G3DSA:3.40.190.10 255 380 7.6E-27 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 Gene3D G3DSA:3.10.105.10 381 592 6.2E-37 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 PANTHER PTHR30290:SF6 14 354 9.8E-227 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 PANTHER PTHR30290:SF6 371 623 9.8E-227 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 PANTHER PTHR30290 14 354 9.8E-227 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 PANTHER PTHR30290 371 623 9.8E-227 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 PIRSF PIRSF002741 55 614 2.7E-84 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 Gene3D G3DSA:3.90.76.10 99 254 1.1E-39 T 22-04-2016 TRD_RS01075 a4440e23c701d4700b96f16cee837fa9 623 SUPERFAMILY SSF53850 86 620 1.7E-120 T 22-04-2016 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 810 39.852 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Pfam PF03484 tRNA synthetase B5 domain 408 477 2.9E-18 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SMART SM00896 723 816 1.9E-32 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Pfam PF01588 Putative tRNA binding domain 45 151 3.0E-19 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.56.10 1 38 6.5E-23 T 22-04-2016 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF56037 208 384 8.37E-66 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SMART SM00873 215 388 1.3E-81 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF50249 35 202 9.43E-40 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Pfam PF03483 B3/4 domain 216 385 7.1E-63 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SMART SM00874 405 477 1.5E-24 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF54991 719 816 1.83E-23 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.70.380 725 816 8.3E-26 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.50.40.10 224 388 5.2E-75 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 816 9.0E-214 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.56.20 406 481 8.8E-22 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Pfam PF03147 Ferredoxin-fold anticodon binding domain 723 816 3.2E-23 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:2.40.50.140 44 223 7.2E-46 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 Gene3D G3DSA:3.30.930.10 495 711 3.4E-51 T 22-04-2016 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF46955 405 481 8.33E-17 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 PANTHER PTHR10947:SF0 2 816 2.9E-244 T 22-04-2016 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 PANTHER PTHR10947 2 816 2.9E-244 T 22-04-2016 TRD_RS02920 61398111b736a1dd72dc2f6083543125 817 SUPERFAMILY SSF55681 473 711 4.22E-36 T 22-04-2016 TRD_RS05675 8aaa045f0e99978bc5589e8a64849339 63 TIGRFAM TIGR04391 CcmD_alt_fam: CcmD family protein 5 36 4.0E-7 T 22-04-2016 IPR030888 Putative ccm operon protein TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 29 308 2.5E-20 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 PANTHER PTHR34697:SF2 497 865 3.6E-91 T 22-04-2016 TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 PANTHER PTHR34697:SF2 365 479 3.6E-91 T 22-04-2016 TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 547 839 6.8E-71 T 22-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 PANTHER PTHR34697 497 865 3.6E-91 T 22-04-2016 TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 PANTHER PTHR34697 365 479 3.6E-91 T 22-04-2016 TRD_RS04665 65487017f46eb26b62d6b04067735b02 873 SUPERFAMILY SSF55729 662 836 1.32E-10 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 308 320 7.1E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 160 173 7.1E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 344 355 7.1E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 184 192 7.1E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PRINTS PR00046 Major sigma-70 factor signature 329 344 7.1E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 329 355 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF04545 Sigma-70, region 4 304 357 2.5E-19 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.10.10 298 369 1.3E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.10.10 209 259 1.5E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 SUPERFAMILY SSF88659 209 283 7.1E-20 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 SUPERFAMILY SSF88659 267 367 3.92E-30 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF04539 Sigma-70 region 3 215 288 5.3E-25 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 SUPERFAMILY SSF88946 68 206 7.85E-54 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PANTHER PTHR30603 69 369 1.2E-162 T 22-04-2016 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF00140 Sigma-70 factor, region 1.2 71 101 1.1E-11 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 PANTHER PTHR30603:SF0 69 369 1.2E-162 T 22-04-2016 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 132 368 8.0E-109 T 22-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Gene3D G3DSA:1.10.601.10 53 205 1.6E-65 T 22-04-2016 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 132 357 1.4E-39 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Pfam PF04542 Sigma-70 region 2 136 206 5.4E-23 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03660 d308fa9d1e86f97624e28aedc4a5b551 369 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 2 369 27.99 T 22-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 SUPERFAMILY SSF52210 123 286 8.77E-55 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 6.8E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 6.8E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 6.8E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 6.8E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Gene3D G3DSA:3.40.50.261 119 287 5.6E-76 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PANTHER PTHR11117 1 289 1.2E-173 T 22-04-2016 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Gene3D G3DSA:3.40.50.720 3 118 2.9E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 SUPERFAMILY SSF51735 1 122 5.07E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Pfam PF02629 CoA binding domain 6 99 7.6E-27 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 PIRSF PIRSF001553 1 291 8.5E-131 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 Pfam PF00549 CoA-ligase 151 271 2.8E-16 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 1.9E-135 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 SMART SM00881 4 100 1.1E-31 T 22-04-2016 IPR003781 CoA-binding GO:0048037 TRD_RS08420 39f8c70e392ec15ea2d1bbf171c4cb6f 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 22-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 24 92 1.5E-32 T 22-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 22 90 1.0E-23 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 PRINTS PR00973 Ribosomal protein S17 family signature 73 83 2.2E-11 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 PRINTS PR00973 Ribosomal protein S17 family signature 41 64 2.2E-11 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 PRINTS PR00973 Ribosomal protein S17 family signature 83 90 2.2E-11 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 PANTHER PTHR10744 21 110 3.0E-38 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 ProSitePatterns PS00056 Ribosomal protein S17 signature. 73 85 - T 22-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 SUPERFAMILY SSF50249 22 100 1.03E-32 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 18 98 24.943 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 Gene3D G3DSA:2.40.50.140 21 107 1.1E-34 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS13550 d3c7b4200e874d62addd7b01f4629d4b 119 Pfam PF00366 Ribosomal protein S17 27 92 1.6E-31 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 SUPERFAMILY SSF53686 11 308 4.98E-81 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 Gene3D G3DSA:3.40.50.1100 53 154 1.2E-28 T 22-04-2016 TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 14 297 3.7E-64 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 PANTHER PTHR10314:SF91 11 308 3.3E-131 T 22-04-2016 TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 PANTHER PTHR10314 11 308 3.3E-131 T 22-04-2016 TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 43 61 - T 22-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 Gene3D G3DSA:3.40.50.1100 11 52 2.1E-65 T 22-04-2016 TRD_RS06155 5129df1c2965b5e9ef8855ec5d7d836e 313 Gene3D G3DSA:3.40.50.1100 161 308 2.1E-65 T 22-04-2016 TRD_RS07765 c37937b85983441c8d3a4dcf782f93fb 164 Pfam PF13185 GAF domain 28 153 7.9E-17 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS07765 c37937b85983441c8d3a4dcf782f93fb 164 PANTHER PTHR21021 10 156 1.5E-35 T 22-04-2016 TRD_RS07765 c37937b85983441c8d3a4dcf782f93fb 164 Gene3D G3DSA:3.30.450.40 6 155 5.7E-42 T 22-04-2016 IPR029016 GAF domain-like TRD_RS07765 c37937b85983441c8d3a4dcf782f93fb 164 SUPERFAMILY SSF55781 11 155 1.64E-38 T 22-04-2016 IPR029016 GAF domain-like TRD_RS07765 c37937b85983441c8d3a4dcf782f93fb 164 SMART SM00065 22 164 6.2E-5 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS07765 c37937b85983441c8d3a4dcf782f93fb 164 PANTHER PTHR21021:SF15 10 156 1.5E-35 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 335 436 4.8E-17 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 311 2.1E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.4E-17 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 328 349 2.4E-17 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 282 289 2.4E-17 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 181 2.4E-17 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 241 255 2.4E-17 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 SUPERFAMILY SSF51905 5 201 1.36E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 Gene3D G3DSA:3.30.390.30 341 448 9.1E-35 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 Gene3D G3DSA:3.50.50.60 114 319 3.0E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PANTHER PTHR22912 4 446 1.4E-148 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 Gene3D G3DSA:3.50.50.60 5 113 1.9E-21 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.4E-30 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 1.4E-30 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 256 1.4E-30 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 1.4E-30 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.4E-30 T 22-04-2016 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 SUPERFAMILY SSF55424 328 448 1.01E-31 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 SUPERFAMILY SSF51905 157 323 1.07E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05980 f2644e8700b3772d010572d7d0524333 452 PANTHER PTHR22912:SF140 4 446 1.4E-148 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 383 402 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.1E-72 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PANTHER PTHR19375:SF173 2 633 0.0 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Pfam PF00012 Hsp70 protein 4 601 1.1E-263 T 22-04-2016 IPR013126 Heat shock protein 70 family TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:1.20.1270.10 528 600 1.8E-19 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:2.60.34.10 385 527 1.8E-71 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.90.640.10 225 309 6.2E-32 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 PANTHER PTHR19375 2 633 0.0 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.420.40 192 224 2.1E-37 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.420.40 314 356 2.1E-37 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 37.898 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF53067 4 184 1.01E-66 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF53067 186 377 1.48E-69 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.420.40 119 191 1.8E-62 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.420.40 4 52 1.8E-62 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF100920 379 535 2.88E-63 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 600 8.0E-298 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 Gene3D G3DSA:3.30.30.30 53 104 7.1E-24 T 22-04-2016 TRD_RS07675 e02928deee9eb25dc07183d6cec8b026 633 SUPERFAMILY SSF100934 502 607 2.94E-12 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 Gene3D G3DSA:3.30.390.10 36 141 6.7E-41 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 PANTHER PTHR13794 195 396 9.1E-120 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 PANTHER PTHR13794 8 173 9.1E-120 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 221 252 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 Gene3D G3DSA:3.20.20.120 142 385 1.6E-73 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 SUPERFAMILY SSF54826 40 137 1.62E-28 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 SMART SM00922 153 271 1.8E-15 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 Pfam PF13378 Enolase C-terminal domain-like 157 391 8.1E-49 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 37 135 4.9E-21 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 SUPERFAMILY SSF51604 123 400 2.88E-72 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 110 135 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 PANTHER PTHR13794:SF61 195 396 9.1E-120 T 22-04-2016 TRD_RS09140 3e5ae9f67915a43b34899e348dde955b 420 PANTHER PTHR13794:SF61 8 173 9.1E-120 T 22-04-2016 TRD_RS01290 b966d268fbd39c7187c1856b03270c7e 384 Pfam PF07907 YibE/F-like protein 122 363 4.6E-74 T 22-04-2016 IPR012507 YibE/F-like TRD_RS01290 b966d268fbd39c7187c1856b03270c7e 384 PANTHER PTHR41771 56 379 5.6E-66 T 22-04-2016 TRD_RS01290 b966d268fbd39c7187c1856b03270c7e 384 PANTHER PTHR41771:SF1 56 379 5.6E-66 T 22-04-2016 TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 SUPERFAMILY SSF54768 15 83 4.5E-21 T 22-04-2016 TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 Gene3D G3DSA:3.30.230.10 83 165 2.8E-31 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 7 170 33.04 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 SUPERFAMILY SSF54211 87 165 2.12E-24 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 PANTHER PTHR13718 4 169 5.5E-68 T 22-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 Pfam PF03719 Ribosomal protein S5, C-terminal domain 94 164 3.1E-28 T 22-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 Gene3D G3DSA:3.30.160.20 17 79 2.2E-28 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 17 169 3.6E-62 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 TRD_RS04445 924a2890e854bad01447456f5fa3f7b6 184 Pfam PF00333 Ribosomal protein S5, N-terminal domain 18 82 1.5E-27 T 22-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 6.7E-27 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Gene3D G3DSA:3.30.1550.10 2 71 9.6E-36 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 PANTHER PTHR11661 1 141 1.5E-72 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 SUPERFAMILY SSF54747 3 72 1.24E-28 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 SMART SM00649 9 140 1.7E-83 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 SUPERFAMILY SSF46906 67 140 1.44E-27 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 140 7.5E-64 T 22-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 1.0E-10 T 22-04-2016 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.702 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 3.8E-28 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 22-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 TRD_RS03120 36a45b00e06b74dc67e50b9ffbc0bc1a 141 Gene3D G3DSA:1.10.10.250 72 140 2.7E-33 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS00705 77d3f0797f9ef6140b4f858e2ff37e21 157 SUPERFAMILY SSF46785 58 150 4.14E-8 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00705 77d3f0797f9ef6140b4f858e2ff37e21 157 Gene3D G3DSA:1.10.10.10 58 129 9.2E-7 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 6 188 2.9E-56 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 SUPERFAMILY SSF52972 3 195 1.88E-69 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 PANTHER PTHR11067:SF9 1 201 1.4E-79 T 22-04-2016 TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 PANTHER PTHR11067 1 201 1.4E-79 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 Pfam PF01725 Ham1 family 6 190 2.8E-55 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 4 195 49.005 T 22-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 TRD_RS03385 3c89b49b2a89662cd5f954a4273b4198 210 Gene3D G3DSA:3.90.950.10 3 196 2.5E-78 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like TRD_RS06860 5ead076695f256eecbbc37dd5865c7ae 212 Pfam PF09948 Predicted metal-binding integral membrane protein (DUF2182) 10 198 4.1E-61 T 22-04-2016 IPR018688 Protein of unknown function DUF2182, transmembrane, metal-binding TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 SUPERFAMILY SSF55021 81 164 1.98E-24 T 22-04-2016 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 Gene3D G3DSA:3.30.70.260 4 81 3.4E-32 T 22-04-2016 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 Pfam PF10369 Small subunit of acetolactate synthase 87 161 2.8E-28 T 22-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 Gene3D G3DSA:3.30.70.1150 86 165 3.7E-29 T 22-04-2016 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 Pfam PF13710 ACT domain 14 76 2.7E-17 T 22-04-2016 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 5 161 2.6E-60 T 22-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 SUPERFAMILY SSF55021 6 79 2.15E-20 T 22-04-2016 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 6 79 1.0E-22 T 22-04-2016 TRD_RS02865 2bb809ad31107780e1ed1f217395b328 174 PANTHER PTHR30239 2 163 9.1E-78 T 22-04-2016 TRD_RS03970 025e93313087ab003180dd8b4601ba26 191 SUPERFAMILY SSF52540 10 189 5.06E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03970 025e93313087ab003180dd8b4601ba26 191 Pfam PF00025 ADP-ribosylation factor family 63 151 1.0E-5 T 22-04-2016 IPR006689 Small GTPase superfamily, ARF/SAR type GO:0005525 TRD_RS03970 025e93313087ab003180dd8b4601ba26 191 PANTHER PTHR11711 1 187 3.3E-41 T 22-04-2016 TRD_RS03970 025e93313087ab003180dd8b4601ba26 191 PANTHER PTHR11711:SF128 1 187 3.3E-41 T 22-04-2016 TRD_RS03970 025e93313087ab003180dd8b4601ba26 191 Gene3D G3DSA:3.40.50.300 12 188 1.9E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 SUPERFAMILY SSF48592 405 524 1.33E-77 T 22-04-2016 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 SUPERFAMILY SSF48592 7 134 1.33E-77 T 22-04-2016 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 530 1.8E-248 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 Gene3D G3DSA:1.10.560.10 367 521 7.5E-41 T 22-04-2016 IPR027413 GroEL-like equatorial domain TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 PANTHER PTHR11353 2 538 1.1E-223 T 22-04-2016 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 527 7.4E-97 T 22-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 Gene3D G3DSA:3.50.7.10 196 366 4.1E-91 T 22-04-2016 IPR027409 GroEL-like apical domain TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 Hamap MF_00600 60 kDa chaperonin [groL]. 2 538 40.64 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 SUPERFAMILY SSF52029 185 375 4.01E-80 T 22-04-2016 IPR027409 GroEL-like apical domain TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 Gene3D G3DSA:1.10.560.10 5 195 5.2E-44 T 22-04-2016 IPR027413 GroEL-like equatorial domain TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 ProSitePatterns PS00296 Chaperonins cpn60 signature. 404 415 - T 22-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 SUPERFAMILY SSF54849 137 202 6.87E-24 T 22-04-2016 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 PRINTS PR00298 60kDa chaperonin signature 349 374 1.8E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 PRINTS PR00298 60kDa chaperonin signature 267 290 1.8E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 PRINTS PR00298 60kDa chaperonin signature 27 53 1.8E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 PRINTS PR00298 60kDa chaperonin signature 83 110 1.8E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS06095 7feb16d4e0afb4335122663c1f585f7d 540 PRINTS PR00298 60kDa chaperonin signature 397 418 1.8E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 PIRSF PIRSF006402 1 684 1.6E-240 T 22-04-2016 IPR024705 Spermatogenesis-associated protein 20 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 PANTHER PTHR12145:SF11 2 680 5.7E-298 T 22-04-2016 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 Gene3D G3DSA:3.40.30.10 20 128 6.6E-36 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 SUPERFAMILY SSF52833 1 127 6.26E-34 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 SUPERFAMILY SSF48208 174 537 3.13E-79 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 Gene3D G3DSA:1.50.10.10 176 322 2.3E-26 T 22-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 Gene3D G3DSA:1.50.10.10 359 532 2.3E-26 T 22-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 Pfam PF03190 Protein of unknown function, DUF255 3 163 2.0E-74 T 22-04-2016 IPR004879 Domain of unknown function DUF255 TRD_RS02355 8362c4215a513831bcb5f4f2e3dad638 687 PANTHER PTHR12145 2 680 5.7E-298 T 22-04-2016 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 SUPERFAMILY SSF51905 2 101 9.39E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 SUPERFAMILY SSF51905 200 323 9.39E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PANTHER PTHR10632:SF8 1 354 3.2E-79 T 22-04-2016 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PANTHER PTHR10632 1 354 3.2E-79 T 22-04-2016 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 176 312 1.9E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 134 2.8E-12 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 Gene3D G3DSA:3.50.50.60 133 252 4.2E-8 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 Gene3D G3DSA:3.50.50.60 253 321 8.2E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 Gene3D G3DSA:3.50.50.60 2 116 8.2E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 3.4E-11 T 22-04-2016 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.4E-11 T 22-04-2016 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 3.4E-11 T 22-04-2016 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 98 106 1.2E-8 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 279 297 1.2E-8 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 TRD_RS05230 35f9829de6d7591af05a23186e3296b4 391 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 1.2E-8 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 Pfam PF00266 Aminotransferase class-V 8 344 5.7E-39 T 22-04-2016 IPR000192 Aminotransferase class V domain TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 PIRSF PIRSF000524 1 370 5.7E-120 T 22-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 Gene3D G3DSA:3.90.1150.10 258 357 8.8E-29 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 PANTHER PTHR21152 8 355 3.2E-104 T 22-04-2016 TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 SUPERFAMILY SSF53383 6 359 2.72E-95 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 Gene3D G3DSA:3.40.640.10 17 257 1.4E-54 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS04780 caed527c2c31058f7093deb7eb206a03 372 PANTHER PTHR21152:SF21 8 355 3.2E-104 T 22-04-2016 TRD_RS07840 544a2d835e809e92b4c4b12507827c79 314 SUPERFAMILY SSF161098 69 303 1.31E-57 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07840 544a2d835e809e92b4c4b12507827c79 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 306 1.5E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07840 544a2d835e809e92b4c4b12507827c79 314 Gene3D G3DSA:1.10.3720.10 87 312 3.1E-61 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07840 544a2d835e809e92b4c4b12507827c79 314 PANTHER PTHR30193 1 313 1.9E-84 T 22-04-2016 TRD_RS07840 544a2d835e809e92b4c4b12507827c79 314 PANTHER PTHR30193:SF6 1 313 1.9E-84 T 22-04-2016 TRD_RS08150 175c1028436505331a9fb16b4ad0da1a 188 SMART SM00507 81 132 2.3E-14 T 22-04-2016 IPR003615 HNH nuclease TRD_RS08150 175c1028436505331a9fb16b4ad0da1a 188 Pfam PF14279 HNH endonuclease 94 146 3.6E-17 T 22-04-2016 IPR029471 HNH endonuclease 5 TRD_RS08150 175c1028436505331a9fb16b4ad0da1a 188 PANTHER PTHR33877 2 185 4.2E-64 T 22-04-2016 TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 5 303 31.603 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 Gene3D G3DSA:3.40.50.150 119 298 1.2E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 PANTHER PTHR18895 19 305 9.2E-74 T 22-04-2016 TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 PIRSF PIRSF000401 3 305 7.0E-73 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 SUPERFAMILY SSF53335 88 302 3.14E-46 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 PANTHER PTHR18895:SF3 19 305 9.2E-74 T 22-04-2016 TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 93 297 2.9E-59 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 TRD_RS01590 fc81505d89f9f9931ad46ecb1ef16c9e 306 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 4 303 8.3E-74 T 22-04-2016 TRD_RS04855 2657814130dced0580b26bb86d2d5b96 304 Pfam PF02517 CAAX protease self-immunity 216 294 7.9E-8 T 22-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 335 412 7.6E-31 T 22-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:1.10.287.610 12 78 2.3E-28 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Pfam PF14520 Helix-hairpin-helix domain 460 512 6.3E-5 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SMART SM00292 608 685 2.8E-13 T 22-04-2016 IPR001357 BRCT domain TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 PANTHER PTHR23389:SF9 1 545 4.3E-186 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:3.30.470.30 130 265 1.8E-47 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF47781 418 596 5.19E-62 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF56091 15 330 6.72E-115 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 126 155 - T 22-04-2016 IPR018239 NAD-dependent DNA ligase, active site TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 23 678 4.2E-251 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Pfam PF12826 Helix-hairpin-helix motif 523 586 9.3E-27 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF50249 332 414 2.91E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 15 331 1.3E-123 T 22-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 345 360 - T 22-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:1.10.150.20 449 516 6.7E-22 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 421 447 2.8E-10 T 22-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 PIRSF PIRSF001604 8 687 1.8E-242 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:2.40.50.140 333 403 7.6E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:1.10.150.20 517 597 3.5E-31 T 22-04-2016 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Hamap MF_01588 DNA ligase [ligA]. 14 682 52.478 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SUPERFAMILY SSF52113 609 684 3.27E-17 T 22-04-2016 IPR001357 BRCT domain TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Gene3D G3DSA:3.40.50.10190 609 685 5.1E-22 T 22-04-2016 IPR001357 BRCT domain TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SMART SM00532 15 461 4.5E-253 T 22-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 525 544 1200.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 459 478 730.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 493 512 2.7 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 SMART SM00278 557 576 0.015 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 608 681 1.8E-11 T 22-04-2016 IPR001357 BRCT domain TRD_RS01010 cd2946b739b111885fbdaadd981e963d 695 PANTHER PTHR23389 1 545 4.3E-186 T 22-04-2016 TRD_RS01710 65212826c6ae279217bf4afdf4781850 366 Gene3D G3DSA:2.40.370.10 55 224 1.6E-39 T 22-04-2016 IPR023374 AttH-like domain TRD_RS01710 65212826c6ae279217bf4afdf4781850 366 Gene3D G3DSA:2.40.370.10 229 357 4.4E-40 T 22-04-2016 IPR023374 AttH-like domain TRD_RS01710 65212826c6ae279217bf4afdf4781850 366 SUPERFAMILY SSF159245 46 356 3.14E-78 T 22-04-2016 TRD_RS01710 65212826c6ae279217bf4afdf4781850 366 Pfam PF17186 Lipocalin-like domain 229 356 7.1E-37 T 22-04-2016 IPR033451 AttH, lipocalin-like domain TRD_RS01710 65212826c6ae279217bf4afdf4781850 366 Pfam PF07143 CrtC N-terminal lipocalin domain 66 222 5.6E-37 T 22-04-2016 IPR010791 AttH domain TRD_RS01710 65212826c6ae279217bf4afdf4781850 366 PANTHER PTHR38591 40 361 4.2E-63 T 22-04-2016 TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 SUPERFAMILY SSF54862 25 131 4.02E-22 T 22-04-2016 TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 53 64 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 92 103 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 PANTHER PTHR10849 6 125 3.0E-44 T 22-04-2016 TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 Gene3D G3DSA:3.30.70.20 16 110 4.5E-17 T 22-04-2016 TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 137 24.892 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 8 130 4.7E-38 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 TRD_RS06880 7b22f4e2a606d9975af84e4686176520 151 Pfam PF12838 4Fe-4S dicluster domain 53 106 2.8E-10 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 PIRSF PIRSF029271 1 300 1.4E-150 T 22-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 Pfam PF01680 SOR/SNZ family 13 218 2.3E-107 T 22-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 16 300 2.8E-146 T 22-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 Gene3D G3DSA:3.20.20.70 30 166 2.4E-53 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 Gene3D G3DSA:3.20.20.70 198 276 2.4E-53 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 SUPERFAMILY SSF51366 24 274 1.84E-66 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 10 300 52.263 T 22-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00125 130c6fd472ef223f2ffe5431121b8ff4 300 PANTHER PTHR31829 8 300 4.8E-215 T 22-04-2016 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 PANTHER PTHR10229 5 417 1.8E-164 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 PANTHER PTHR10229:SF0 5 417 1.8E-164 T 22-04-2016 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 Hamap MF_00900 GTPase HflX [hflX]. 25 393 48.571 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 PIRSF PIRSF006809 2 422 3.6E-156 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 Pfam PF16360 GTP-binding GTPase Middle Region 112 191 3.4E-31 T 22-04-2016 IPR032305 GTP-binding protein, middle domain TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 Gene3D G3DSA:3.40.50.300 195 362 3.0E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 Pfam PF13167 GTP-binding GTPase N-terminal 23 110 2.5E-30 T 22-04-2016 IPR025121 GTPase HflX, N-terminal TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 SUPERFAMILY SSF52540 196 363 5.92E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 220 238 4.6E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 266 284 4.6E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 199 219 4.6E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 6 361 3.3E-142 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 TRD_RS03955 9c577aed32c82f0f4c799bbf2e3f376f 427 Pfam PF01926 50S ribosome-binding GTPase 199 317 3.7E-21 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 TRD_RS13760 deec7452e6157d236c99be6f530d449f 169 Pfam PF00156 Phosphoribosyl transferase domain 42 138 3.6E-9 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 TRD_RS13760 deec7452e6157d236c99be6f530d449f 169 Gene3D G3DSA:3.40.50.2020 42 132 1.1E-14 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS13760 deec7452e6157d236c99be6f530d449f 169 SUPERFAMILY SSF53271 8 132 3.8E-15 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 SUPERFAMILY SSF49464 200 271 1.16E-5 T 22-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 SUPERFAMILY SSF49464 121 200 6.41E-10 T 22-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 SUPERFAMILY SSF51445 333 500 2.6E-10 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 Pfam PF13620 Carboxypeptidase regulatory-like domain 122 196 5.1E-10 T 22-04-2016 TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 Pfam PF13200 Putative glycosyl hydrolase domain 274 583 9.1E-117 T 22-04-2016 IPR025275 Putative glycosyl hydrolase domain DUF4015 TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 Gene3D G3DSA:2.60.40.1120 122 199 2.0E-8 T 22-04-2016 IPR014766 Carboxypeptidase, regulatory domain TRD_RS04720 06d0937a6bfa30d91255b6f4ea75513e 592 Gene3D G3DSA:2.60.40.1120 201 269 1.4E-4 T 22-04-2016 IPR014766 Carboxypeptidase, regulatory domain TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 Pfam PF00120 Glutamine synthetase, catalytic domain 108 479 6.9E-126 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 SUPERFAMILY SSF55931 108 481 1.86E-128 T 22-04-2016 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 9 481 9.7E-187 T 22-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 SMART SM01230 107 389 1.2E-146 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 PANTHER PTHR20852:SF15 166 482 3.2E-229 T 22-04-2016 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 PANTHER PTHR20852:SF15 9 143 3.2E-229 T 22-04-2016 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 20 100 3.9E-30 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 PANTHER PTHR20852 166 482 3.2E-229 T 22-04-2016 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 PANTHER PTHR20852 9 143 3.2E-229 T 22-04-2016 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 Gene3D G3DSA:3.10.20.70 8 110 3.9E-38 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 ProSitePatterns PS00180 Glutamine synthetase signature 1. 55 73 - T 22-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 264 279 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 Gene3D G3DSA:3.30.590.10 111 462 2.5E-125 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 TRD_RS07290 6f757e0221cd0db4ae9ca0b093cd31aa 482 SUPERFAMILY SSF54368 8 106 1.14E-33 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 PANTHER PTHR30290 3 496 1.5E-103 T 22-04-2016 TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 PIRSF PIRSF002741 2 504 8.3E-80 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 Gene3D G3DSA:3.10.105.10 283 473 1.0E-33 T 22-04-2016 TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 419 5.9E-78 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 Gene3D G3DSA:3.40.190.10 147 282 2.7E-38 T 22-04-2016 TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 Gene3D G3DSA:3.90.76.10 70 146 3.0E-21 T 22-04-2016 TRD_RS08590 03b6708021632f20a6606ed1039abf22 506 SUPERFAMILY SSF53850 16 496 3.26E-112 T 22-04-2016 TRD_RS06515 7ec749f91db9a987e29a17527c14c4a3 266 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 107 255 5.8E-11 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS06515 7ec749f91db9a987e29a17527c14c4a3 266 PANTHER PTHR30143 12 266 3.2E-79 T 22-04-2016 TRD_RS06515 7ec749f91db9a987e29a17527c14c4a3 266 Gene3D G3DSA:3.90.850.10 9 266 8.8E-79 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS06515 7ec749f91db9a987e29a17527c14c4a3 266 SUPERFAMILY SSF56529 10 266 1.31E-72 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 PANTHER PTHR24423 104 256 1.3E-43 T 22-04-2016 TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 PRINTS PR00344 Bacterial sensor protein C-terminal signature 241 254 1.2E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 PRINTS PR00344 Bacterial sensor protein C-terminal signature 186 200 1.2E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 PRINTS PR00344 Bacterial sensor protein C-terminal signature 217 235 1.2E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 PRINTS PR00344 Bacterial sensor protein C-terminal signature 204 214 1.2E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 150 255 1.5E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 Gene3D G3DSA:3.30.565.10 106 256 1.2E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 SUPERFAMILY SSF55874 106 255 5.76E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS00035 b8a2d16ba4b68e9fae2f7a570d38b63f 267 SMART SM00387 149 257 2.6E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 PANTHER PTHR24078 1 367 1.8E-154 T 22-04-2016 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Pfam PF00684 DnaJ central domain 147 211 1.3E-13 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF46565 2 103 1.96E-37 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 8 26 8.6E-32 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 42 62 8.6E-32 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 62 81 8.6E-32 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 PRINTS PR00625 DnaJ domain signature 26 41 8.6E-32 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF57938 134 214 6.15E-18 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Pfam PF01556 DnaJ C terminal domain 120 337 1.7E-39 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 SMART SM00271 5 62 2.2E-35 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 3 375 40.745 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 22-04-2016 IPR018253 DnaJ domain, conserved site TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.10.230.10 142 213 5.4E-20 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF49493 263 348 9.03E-24 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF49493 113 138 3.27E-19 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 SUPERFAMILY SSF49493 204 271 3.27E-19 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Pfam PF00226 DnaJ domain 6 67 1.8E-29 T 22-04-2016 IPR001623 DnaJ domain TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 6 354 3.4E-133 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 PANTHER PTHR24078:SF190 1 367 1.8E-154 T 22-04-2016 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.60.260.20 260 338 2.4E-23 T 22-04-2016 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.60.260.20 214 258 1.7E-19 T 22-04-2016 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:2.60.260.20 111 141 1.7E-19 T 22-04-2016 TRD_RS06810 776e22c1db33f7f42217eb79d06bfc81 378 Gene3D G3DSA:1.10.287.110 1 106 4.3E-38 T 22-04-2016 IPR001623 DnaJ domain TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 SUPERFAMILY SSF52440 2 89 1.73E-19 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 PANTHER PTHR11609 1 349 4.0E-130 T 22-04-2016 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 Pfam PF02222 ATP-grasp domain 106 275 3.9E-56 T 22-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 Gene3D G3DSA:3.30.470.20 176 359 1.5E-63 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 SUPERFAMILY SSF51246 300 360 5.96E-16 T 22-04-2016 IPR011054 Rudiment single hybrid motif TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 PANTHER PTHR11609:SF5 1 349 4.0E-130 T 22-04-2016 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 349 7.2E-114 T 22-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 SUPERFAMILY SSF56059 97 295 1.54E-63 T 22-04-2016 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 347 41.345 T 22-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 Gene3D G3DSA:3.30.1490.20 112 175 1.7E-20 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS02945 6ab38febfc3b5956ed93ae8e7613def5 369 Gene3D G3DSA:3.40.50.20 2 105 1.1E-25 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS06735 80d27564c497c3392cef2bece899946c 425 PANTHER PTHR30474 45 419 2.0E-122 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 TRD_RS06735 80d27564c497c3392cef2bece899946c 425 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 66 417 5.5E-102 T 22-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 TRD_RS06735 80d27564c497c3392cef2bece899946c 425 PANTHER PTHR30474:SF1 45 419 2.0E-122 T 22-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 TRD_RS06735 80d27564c497c3392cef2bece899946c 425 Pfam PF01098 Cell cycle protein 68 418 3.3E-80 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 Gene3D G3DSA:3.40.50.1820 9 269 1.3E-47 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 Pfam PF12697 Alpha/beta hydrolase family 30 262 1.7E-17 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 1.6E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 1.6E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.6E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 PANTHER PTHR10992 1 270 1.7E-42 T 22-04-2016 TRD_RS02590 8657f44457a9163fe162fd3b4aaf5dae 278 SUPERFAMILY SSF53474 8 269 6.18E-49 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS03320 d1705e81db5f91e1c1c446f09f10f398 574 PANTHER PTHR16254:SF17 12 570 1.4E-136 T 22-04-2016 TRD_RS03320 d1705e81db5f91e1c1c446f09f10f398 574 Gene3D G3DSA:3.40.50.720 411 554 4.1E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03320 d1705e81db5f91e1c1c446f09f10f398 574 Pfam PF02254 TrkA-N domain 416 531 1.6E-26 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 TRD_RS03320 d1705e81db5f91e1c1c446f09f10f398 574 Pfam PF00999 Sodium/hydrogen exchanger family 11 377 5.0E-49 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 TRD_RS03320 d1705e81db5f91e1c1c446f09f10f398 574 SUPERFAMILY SSF51735 412 554 1.38E-33 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03320 d1705e81db5f91e1c1c446f09f10f398 574 PANTHER PTHR16254 12 570 1.4E-136 T 22-04-2016 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Pfam PF12848 ABC transporter 233 309 3.9E-22 T 22-04-2016 IPR032781 ABC-transporter extension domain TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Pfam PF00005 ABC transporter 22 194 7.8E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Pfam PF00005 ABC transporter 347 471 8.4E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 SMART SM00382 352 525 3.4E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 SMART SM00382 30 241 5.4E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 SUPERFAMILY SSF52540 323 533 1.21E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 PANTHER PTHR19211 6 528 7.2E-214 T 22-04-2016 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 PANTHER PTHR19211 547 589 7.2E-214 T 22-04-2016 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Gene3D G3DSA:3.40.50.300 127 281 6.0E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Gene3D G3DSA:3.40.50.300 4 92 6.0E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Gene3D G3DSA:3.40.50.300 334 536 1.5E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 Pfam PF16326 ABC transporter C-terminal domain 566 628 2.0E-11 T 22-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 SUPERFAMILY SSF52540 135 269 6.79E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08030 0ea519877953a49211fbc86d11f22182 638 SUPERFAMILY SSF52540 3 96 6.79E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 PANTHER PTHR34824 4 345 1.4E-91 T 22-04-2016 TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 SUPERFAMILY SSF46785 5 87 1.69E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 Pfam PF01628 HrcA protein C terminal domain 109 321 3.7E-43 T 22-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 SUPERFAMILY SSF55781 75 338 5.69E-43 T 22-04-2016 IPR029016 GAF domain-like TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 6 335 8.7E-88 T 22-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 PIRSF PIRSF005485 2 340 4.1E-88 T 22-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 4 71 2.0E-6 T 22-04-2016 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 Gene3D G3DSA:1.10.10.10 3 87 2.0E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 4 329 24.864 T 22-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 TRD_RS07665 000bbea655504b8eb50c23d1533504b5 348 Gene3D G3DSA:3.30.450.40 181 339 2.0E-27 T 22-04-2016 IPR029016 GAF domain-like TRD_RS06390 f0e434dd5d57d859212cf12ef99ca6c6 194 Gene3D G3DSA:2.40.128.110 20 192 2.0E-70 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like TRD_RS06390 f0e434dd5d57d859212cf12ef99ca6c6 194 PANTHER PTHR34406:SF1 6 192 1.6E-67 T 22-04-2016 TRD_RS06390 f0e434dd5d57d859212cf12ef99ca6c6 194 PANTHER PTHR34406 6 192 1.6E-67 T 22-04-2016 TRD_RS06390 f0e434dd5d57d859212cf12ef99ca6c6 194 Pfam PF04264 YceI-like domain 21 187 1.1E-50 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like TRD_RS06390 f0e434dd5d57d859212cf12ef99ca6c6 194 SUPERFAMILY SSF101874 19 191 7.19E-64 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like TRD_RS06390 f0e434dd5d57d859212cf12ef99ca6c6 194 SMART SM00867 20 189 1.6E-79 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like TRD_RS00550 1f5948a678b24c1cd26813324b8a09da 99 PANTHER PTHR12919 1 81 5.8E-38 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS00550 1f5948a678b24c1cd26813324b8a09da 99 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 76 24.505 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS00550 1f5948a678b24c1cd26813324b8a09da 99 Gene3D G3DSA:3.30.1320.10 1 82 1.8E-32 T 22-04-2016 IPR023803 Ribosomal protein S16 domain TRD_RS00550 1f5948a678b24c1cd26813324b8a09da 99 SUPERFAMILY SSF54565 1 84 1.31E-33 T 22-04-2016 IPR023803 Ribosomal protein S16 domain TRD_RS00550 1f5948a678b24c1cd26813324b8a09da 99 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 2.4E-31 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS00550 1f5948a678b24c1cd26813324b8a09da 99 Pfam PF00886 Ribosomal protein S16 8 66 4.3E-24 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 Gene3D G3DSA:3.90.190.20 317 449 5.9E-33 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 SUPERFAMILY SSF53244 316 449 2.09E-29 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 SUPERFAMILY SSF53623 41 314 2.75E-75 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 Pfam PF08245 Mur ligase middle domain 67 289 1.1E-13 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 TIGRFAM TIGR01499 folC: bifunctional protein FolC 45 448 6.0E-104 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 384 5.1E-10 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 PANTHER PTHR11136 35 459 1.0E-113 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 TRD_RS02425 e941297b223278b4b1b29eb3e03a6387 484 Gene3D G3DSA:3.40.1190.10 41 314 4.4E-82 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Hamap MF_00952 DNA topoisomerase 1 [topA]. 35 681 55.118 T 22-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:3.30.65.10 610 666 2.0E-18 T 22-04-2016 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:3.30.65.10 671 710 3.3E-4 T 22-04-2016 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PANTHER PTHR11390:SF27 33 732 0.0 T 22-04-2016 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 SMART SM00437 280 558 1.4E-112 T 22-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 SMART SM00493 35 135 7.3E-34 T 22-04-2016 IPR006171 Toprim domain TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 SMART SM00436 136 224 9.6E-55 T 22-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 SUPERFAMILY SSF56712 36 637 2.75E-193 T 22-04-2016 IPR023405 DNA topoisomerase, type IA, core domain TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 37 658 2.3E-243 T 22-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Pfam PF01751 Toprim domain 37 145 3.6E-30 T 22-04-2016 IPR006171 Toprim domain TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:3.40.50.140 35 166 1.1E-46 T 22-04-2016 IPR006171 Toprim domain TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PANTHER PTHR11390 33 732 0.0 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 331 340 4.9E-38 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 4.9E-38 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 409 425 4.9E-38 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 109 122 4.9E-38 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 4.9E-38 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Pfam PF01131 DNA topoisomerase 160 595 2.1E-125 T 22-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 340 - T 22-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:1.10.460.10 505 609 1.3E-61 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:1.10.460.10 667 670 1.3E-61 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:1.10.460.10 167 214 1.3E-61 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:2.70.20.10 216 352 8.0E-29 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Gene3D G3DSA:2.70.20.10 357 504 2.2E-34 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 625 660 8.4E-13 T 22-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 706 718 2.1 T 22-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 TRD_RS07495 f9b722537eb301ebac7a97abec168270 744 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 665 702 7.3E-16 T 22-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 TRD_RS07030 3bbdf1e98aa812884dde9a74b7aebce8 211 SMART SM00849 14 190 4.8E-40 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS07030 3bbdf1e98aa812884dde9a74b7aebce8 211 Gene3D G3DSA:3.60.15.10 9 200 1.8E-49 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS07030 3bbdf1e98aa812884dde9a74b7aebce8 211 Pfam PF00753 Metallo-beta-lactamase superfamily 11 190 7.6E-28 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS07030 3bbdf1e98aa812884dde9a74b7aebce8 211 SUPERFAMILY SSF56281 9 200 6.63E-50 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS07030 3bbdf1e98aa812884dde9a74b7aebce8 211 PANTHER PTHR11935 3 200 1.5E-49 T 22-04-2016 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 PRINTS PR00123 ATP synthase A subunit signature 248 263 1.3E-5 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 PRINTS PR00123 ATP synthase A subunit signature 87 103 1.3E-5 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 PANTHER PTHR11410 140 271 8.1E-61 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 PANTHER PTHR11410 4 105 8.1E-61 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 Gene3D G3DSA:1.20.120.220 79 266 1.2E-49 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 Pfam PF00119 ATP synthase A chain 30 261 2.8E-56 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 268 15.339 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 PANTHER PTHR11410:SF7 140 271 8.1E-61 T 22-04-2016 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 PANTHER PTHR11410:SF7 4 105 8.1E-61 T 22-04-2016 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 23 262 2.2E-42 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 SUPERFAMILY SSF81336 79 261 3.79E-33 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 TRD_RS05765 3aeec148e957af429175edb2c174dcbe 296 ProSitePatterns PS00449 ATP synthase a subunit signature. 199 208 - T 22-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 SMART SM00701 170 317 2.8E-27 T 22-04-2016 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 199 335 1.2E-9 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 PANTHER PTHR11022:SF41 172 343 2.3E-41 T 22-04-2016 TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 Gene3D G3DSA:3.40.80.10 172 346 1.4E-45 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 SUPERFAMILY SSF55846 172 347 6.54E-43 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 SMART SM00644 189 335 0.002 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS08505 cbb0a674898b6e6f1d9fff767e8ea38a 702 PANTHER PTHR11022 172 343 2.3E-41 T 22-04-2016 IPR015510 Peptidoglycan recognition protein GO:0008745|GO:0009253 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PIRSF PIRSF006060 11 536 7.8E-37 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PANTHER PTHR11785 242 537 9.8E-32 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PANTHER PTHR11785 156 219 9.8E-32 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PANTHER PTHR11785 18 134 9.8E-32 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 Pfam PF13520 Amino acid permease 54 488 1.5E-23 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PANTHER PTHR11785:SF381 242 537 9.8E-32 T 22-04-2016 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PANTHER PTHR11785:SF381 156 219 9.8E-32 T 22-04-2016 TRD_RS06180 bfba6c66b8d6ff1b89e1ce25456ac927 537 PANTHER PTHR11785:SF381 18 134 9.8E-32 T 22-04-2016 TRD_RS02025 8569007a3af2aab4f9e0560fc8a67a93 253 Gene3D G3DSA:3.40.1130.10 23 221 2.4E-29 T 22-04-2016 TRD_RS02025 8569007a3af2aab4f9e0560fc8a67a93 253 SMART SM00563 52 165 4.7E-37 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 TRD_RS02025 8569007a3af2aab4f9e0560fc8a67a93 253 PANTHER PTHR10434:SF21 9 237 6.6E-56 T 22-04-2016 TRD_RS02025 8569007a3af2aab4f9e0560fc8a67a93 253 Pfam PF01553 Acyltransferase 38 162 2.1E-26 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 TRD_RS02025 8569007a3af2aab4f9e0560fc8a67a93 253 PANTHER PTHR10434 9 237 6.6E-56 T 22-04-2016 TRD_RS02025 8569007a3af2aab4f9e0560fc8a67a93 253 SUPERFAMILY SSF69593 19 244 4.71E-51 T 22-04-2016 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PANTHER PTHR22773:SF40 1 453 5.3E-204 T 22-04-2016 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PANTHER PTHR22773:SF40 474 521 5.3E-204 T 22-04-2016 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 520 4.3E-188 T 22-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 Pfam PF00361 Proton-conducting membrane transporter 131 419 1.4E-81 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 36 122 6.8E-5 T 22-04-2016 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 382 408 2.1E-45 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 242 266 2.1E-45 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 330 349 2.1E-45 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 137 156 2.1E-45 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 2.1E-45 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PANTHER PTHR22773 1 453 5.3E-204 T 22-04-2016 TRD_RS08350 9691d46de05c72e32fdfcc4089df5d2d 524 PANTHER PTHR22773 474 521 5.3E-204 T 22-04-2016 TRD_RS02465 c56db13333674f05a8f20a8f16a5ac45 129 PANTHER PTHR33569 7 129 5.9E-38 T 22-04-2016 TRD_RS02465 c56db13333674f05a8f20a8f16a5ac45 129 PANTHER PTHR33569:SF1 7 129 5.9E-38 T 22-04-2016 TRD_RS02465 c56db13333674f05a8f20a8f16a5ac45 129 SUPERFAMILY SSF51278 7 128 1.31E-36 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02465 c56db13333674f05a8f20a8f16a5ac45 129 Pfam PF00699 Urease beta subunit 8 104 3.1E-29 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02465 c56db13333674f05a8f20a8f16a5ac45 129 Gene3D G3DSA:2.10.150.10 8 128 4.7E-36 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS03990 c9a68bde374dd684c6080dd2ad01ffd5 397 Pfam PF09376 NurA domain 79 360 5.1E-19 T 22-04-2016 IPR018977 NurA domain TRD_RS03990 c9a68bde374dd684c6080dd2ad01ffd5 397 SMART SM00933 76 360 4.1E-25 T 22-04-2016 IPR018977 NurA domain TRD_RS13185 3906c452dad9f67e575248622d564693 181 Gene3D G3DSA:3.40.50.970 44 180 4.1E-29 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS13185 3906c452dad9f67e575248622d564693 181 Gene3D G3DSA:3.40.50.1220 1 43 2.0E-4 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS13185 3906c452dad9f67e575248622d564693 181 PANTHER PTHR18968 1 174 1.0E-22 T 22-04-2016 TRD_RS13185 3906c452dad9f67e575248622d564693 181 SUPERFAMILY SSF52518 64 180 5.54E-28 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS13185 3906c452dad9f67e575248622d564693 181 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 100 180 3.9E-18 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 TRD_RS13185 3906c452dad9f67e575248622d564693 181 SUPERFAMILY SSF52467 2 51 3.83E-5 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS01325 1a57b51fa4ff28a5149cedeed57bcfca 309 Pfam PF00892 EamA-like transporter family 170 303 1.9E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 TRD_RS01325 1a57b51fa4ff28a5149cedeed57bcfca 309 Pfam PF00892 EamA-like transporter family 21 160 7.5E-16 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 TRD_RS01325 1a57b51fa4ff28a5149cedeed57bcfca 309 PANTHER PTHR12715 5 303 5.8E-32 T 22-04-2016 TRD_RS01325 1a57b51fa4ff28a5149cedeed57bcfca 309 SUPERFAMILY SSF103481 212 306 2.48E-8 T 22-04-2016 TRD_RS01325 1a57b51fa4ff28a5149cedeed57bcfca 309 SUPERFAMILY SSF103481 55 164 6.54E-11 T 22-04-2016 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 PIRSF PIRSF004749 1 172 1.4E-51 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 PANTHER PTHR10458 1 162 6.8E-64 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 Hamap MF_00163 Peptide deformylase [def]. 2 168 29.402 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 SUPERFAMILY SSF56420 2 164 1.7E-55 T 22-04-2016 IPR023635 Peptide deformylase TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 Pfam PF01327 Polypeptide deformylase 4 156 1.5E-48 T 22-04-2016 IPR023635 Peptide deformylase TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 126 155 1.8E-35 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 33 62 1.8E-35 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 95 106 1.8E-35 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 PRINTS PR01576 Peptide deformylase signature 107 125 1.8E-35 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 Gene3D G3DSA:3.90.45.10 5 162 1.0E-57 T 22-04-2016 IPR023635 Peptide deformylase TRD_RS07545 9a8dee68a42d6e93e15c81947c64d352 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 157 1.3E-45 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 PIRSF PIRSF000446 1 301 4.0E-89 T 22-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 Gene3D G3DSA:3.30.70.250 125 189 5.8E-20 T 22-04-2016 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 PANTHER PTHR10982 4 287 9.2E-125 T 22-04-2016 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 283 2.7E-88 T 22-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 SUPERFAMILY SSF52151 4 128 7.59E-70 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 SUPERFAMILY SSF52151 191 289 7.59E-70 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 305 3.3E-50 T 22-04-2016 IPR020801 Polyketide synthase, acyl transferase domain TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 Pfam PF00698 Acyl transferase domain 5 275 6.5E-51 T 22-04-2016 IPR014043 Acyl transferase TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 SUPERFAMILY SSF55048 127 186 1.7E-14 T 22-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 Gene3D G3DSA:3.40.366.10 4 122 5.2E-69 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 TRD_RS07585 5a6e7c549e1d027ffb2000c55935248c 312 Gene3D G3DSA:3.40.366.10 190 298 5.2E-69 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 TRD_RS04335 b25936c0ff68813ce882fe35518378f5 233 Gene3D G3DSA:1.10.1740.10 45 141 9.3E-5 T 22-04-2016 TRD_RS04335 b25936c0ff68813ce882fe35518378f5 233 Pfam PF08281 Sigma-70, region 4 169 209 4.8E-6 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04335 b25936c0ff68813ce882fe35518378f5 233 SUPERFAMILY SSF88659 144 227 1.85E-13 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04335 b25936c0ff68813ce882fe35518378f5 233 Gene3D G3DSA:1.10.10.10 162 226 2.0E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04335 b25936c0ff68813ce882fe35518378f5 233 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 43 221 3.6E-14 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS13535 70981b464a6101de0bc7cea98d8eb88b 483 PANTHER PTHR33393 181 448 1.1E-51 T 22-04-2016 TRD_RS13535 70981b464a6101de0bc7cea98d8eb88b 483 PANTHER PTHR33393:SF2 181 448 1.1E-51 T 22-04-2016 TRD_RS13535 70981b464a6101de0bc7cea98d8eb88b 483 Gene3D G3DSA:3.60.21.10 250 476 4.7E-11 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS13535 70981b464a6101de0bc7cea98d8eb88b 483 SUPERFAMILY SSF56300 181 460 1.19E-34 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS13535 70981b464a6101de0bc7cea98d8eb88b 483 SMART SM00854 181 421 5.5E-83 T 22-04-2016 IPR019079 Capsule synthesis protein, CapA TRD_RS13535 70981b464a6101de0bc7cea98d8eb88b 483 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 181 421 2.6E-67 T 22-04-2016 IPR019079 Capsule synthesis protein, CapA TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 SUPERFAMILY SSF54862 17 221 1.67E-61 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 Pfam PF13247 4Fe-4S dicluster domain 91 185 2.6E-24 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 Gene3D G3DSA:3.30.70.20 104 135 6.6E-12 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 PANTHER PTHR11938 86 211 5.8E-41 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 PANTHER PTHR11938 18 51 5.8E-41 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 PIRSF PIRSF036298 2 279 3.0E-65 T 22-04-2016 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 PANTHER PTHR11938:SF88 86 211 5.8E-41 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 PANTHER PTHR11938:SF88 18 51 5.8E-41 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 Gene3D G3DSA:3.30.70.20 136 170 6.4E-15 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 131 142 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 Gene3D G3DSA:3.30.70.20 171 211 8.4E-34 T 22-04-2016 TRD_RS09210 1b5334f6072313d8523a2ff3d8985be8 282 Gene3D G3DSA:3.30.70.20 17 103 8.4E-34 T 22-04-2016 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SUPERFAMILY SSF46894 129 230 2.32E-31 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Gene3D G3DSA:1.10.10.10 131 231 5.1E-38 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SMART SM00862 153 229 2.5E-28 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Pfam PF00072 Response regulator receiver domain 4 113 4.1E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 PANTHER PTHR26402 2 230 2.2E-97 T 22-04-2016 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 2.5E-28 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SUPERFAMILY SSF52172 3 124 2.56E-43 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 PANTHER PTHR26402:SF50 2 230 2.2E-97 T 22-04-2016 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 Gene3D G3DSA:3.40.50.2300 3 120 1.6E-43 T 22-04-2016 TRD_RS07480 f8b234f788a8d00dbac20ea7a9c5ebe5 239 SMART SM00448 2 112 1.3E-47 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 PANTHER PTHR24421 28 120 2.2E-41 T 22-04-2016 TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 PANTHER PTHR24421 246 468 2.2E-41 T 22-04-2016 TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 SMART SM00387 361 457 3.5E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 SUPERFAMILY SSF55874 320 455 9.3E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 Pfam PF13185 GAF domain 99 235 7.8E-23 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 Gene3D G3DSA:3.30.565.10 325 455 1.0E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 Pfam PF07730 Histidine kinase 251 318 3.7E-15 T 22-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 SUPERFAMILY SSF55781 81 259 3.93E-32 T 22-04-2016 IPR029016 GAF domain-like TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 455 1.8E-11 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 SMART SM00065 99 244 2.8E-21 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS07265 1dc58a558a2eaeeebbb56534142d73b9 473 Gene3D G3DSA:3.30.450.40 87 242 1.7E-32 T 22-04-2016 IPR029016 GAF domain-like TRD_RS01595 27d4d04a1db55ee579666baef4f2cee9 330 Gene3D G3DSA:3.90.550.10 1 282 1.3E-64 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS01595 27d4d04a1db55ee579666baef4f2cee9 330 SUPERFAMILY SSF53448 1 283 6.08E-60 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS01595 27d4d04a1db55ee579666baef4f2cee9 330 PANTHER PTHR22572 2 314 4.1E-73 T 22-04-2016 TRD_RS01595 27d4d04a1db55ee579666baef4f2cee9 330 Pfam PF00483 Nucleotidyl transferase 4 231 4.1E-27 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 Gene3D G3DSA:3.20.20.120 114 371 2.8E-84 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 SMART SM00922 129 254 2.3E-23 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 Gene3D G3DSA:3.30.390.10 1 113 7.1E-35 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 SUPERFAMILY SSF51604 96 379 2.75E-78 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 SUPERFAMILY SSF54826 1 108 1.57E-25 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 Pfam PF13378 Enolase C-terminal domain-like 133 374 7.2E-59 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 PANTHER PTHR13794 1 149 1.2E-105 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 PANTHER PTHR13794 178 382 1.2E-105 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 108 1.4E-15 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 PANTHER PTHR13794:SF4 1 149 1.2E-105 T 22-04-2016 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 PANTHER PTHR13794:SF4 178 382 1.2E-105 T 22-04-2016 TRD_RS09135 e6edbf0b75f4637bb9fb63dfe698f279 390 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 83 108 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 Gene3D G3DSA:3.20.20.80 5 448 3.6E-164 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 SUPERFAMILY SSF51445 5 448 4.29E-165 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 TIGRFAM TIGR03356 BGL: beta-galactosidase 6 440 6.1E-190 T 22-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PANTHER PTHR10353 5 452 1.4E-201 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 418 430 5.4E-23 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 394 411 5.4E-23 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 353 361 5.4E-23 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 284 298 5.4E-23 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 373 384 5.4E-23 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 353 361 - T 22-04-2016 IPR018120 Glycoside hydrolase family 1, active site TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 PANTHER PTHR10353:SF36 5 452 1.4E-201 T 22-04-2016 TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 22-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site TRD_RS08230 4304ad170cbd10cb4d08fa92242dfe4a 452 Pfam PF00232 Glycosyl hydrolase family 1 4 447 2.0E-166 T 22-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 TRD_RS03750 1195199c0ee21b3fcf4e8209f0e81dd3 265 SUPERFAMILY SSF56281 2 224 4.32E-35 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS03750 1195199c0ee21b3fcf4e8209f0e81dd3 265 SMART SM00849 11 210 3.6E-6 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS03750 1195199c0ee21b3fcf4e8209f0e81dd3 265 PANTHER PTHR13754:SF15 1 229 2.2E-50 T 22-04-2016 TRD_RS03750 1195199c0ee21b3fcf4e8209f0e81dd3 265 Gene3D G3DSA:3.60.15.10 3 227 5.8E-31 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS03750 1195199c0ee21b3fcf4e8209f0e81dd3 265 PANTHER PTHR13754 1 229 2.2E-50 T 22-04-2016 TRD_RS03750 1195199c0ee21b3fcf4e8209f0e81dd3 265 Pfam PF12706 Beta-lactamase superfamily domain 23 208 2.5E-16 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 SUPERFAMILY SSF46785 7 79 5.46E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 Pfam PF09339 IclR helix-turn-helix domain 8 54 2.7E-12 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 SMART SM00346 5 95 7.1E-14 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 Pfam PF01614 Bacterial transcriptional regulator 123 247 1.5E-39 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 SUPERFAMILY SSF55781 63 251 7.19E-56 T 22-04-2016 IPR029016 GAF domain-like TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 PANTHER PTHR30136 6 261 7.5E-71 T 22-04-2016 TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 Gene3D G3DSA:1.10.10.10 6 77 6.9E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 PANTHER PTHR30136:SF2 6 261 7.5E-71 T 22-04-2016 TRD_RS01200 6711166d21518ea0e20dcc5ee322e537 273 Gene3D G3DSA:3.30.450.40 78 253 2.0E-63 T 22-04-2016 IPR029016 GAF domain-like TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 4.2E-9 T 22-04-2016 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 318 325 4.2E-9 T 22-04-2016 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 283 4.2E-9 T 22-04-2016 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 325 1.4E-19 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 Gene3D G3DSA:3.50.50.60 178 346 1.7E-12 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 SUPERFAMILY SSF51905 5 346 1.42E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 Gene3D G3DSA:3.40.50.720 3 175 1.2E-25 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 2.1E-10 T 22-04-2016 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 284 2.1E-10 T 22-04-2016 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 303 325 2.1E-10 T 22-04-2016 TRD_RS00740 4b29f0920651d0f2c8b05ea0b60dd26e 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.1E-10 T 22-04-2016 TRD_RS00105 687e3a210a8793e86f284eeb2e5b99da 329 Pfam PF01867 CRISPR associated protein Cas1 5 284 1.6E-94 T 22-04-2016 IPR002729 CRISPR-associated protein Cas1 TRD_RS00105 687e3a210a8793e86f284eeb2e5b99da 329 PANTHER PTHR34353 1 329 3.7E-161 T 22-04-2016 TRD_RS00105 687e3a210a8793e86f284eeb2e5b99da 329 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 4 325 21.345 T 22-04-2016 IPR002729 CRISPR-associated protein Cas1 TRD_RS00105 687e3a210a8793e86f284eeb2e5b99da 329 PANTHER PTHR34353:SF1 1 329 3.7E-161 T 22-04-2016 TRD_RS00105 687e3a210a8793e86f284eeb2e5b99da 329 TIGRFAM TIGR03641 cas1_HMARI: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP 4 327 5.3E-134 T 22-04-2016 IPR019858 CRISPR-associated protein Cas1, HMARI/TNEAP subtype TRD_RS00105 687e3a210a8793e86f284eeb2e5b99da 329 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 5 322 1.3E-102 T 22-04-2016 IPR002729 CRISPR-associated protein Cas1 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 Pfam PF01546 Peptidase family M20/M25/M40 83 397 2.1E-25 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 SUPERFAMILY SSF53187 12 187 7.65E-53 T 22-04-2016 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 SUPERFAMILY SSF53187 318 400 7.65E-53 T 22-04-2016 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 Pfam PF07687 Peptidase dimerisation domain 185 285 8.3E-18 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 PANTHER PTHR11014 19 405 3.9E-65 T 22-04-2016 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 Gene3D G3DSA:3.30.70.360 197 297 7.3E-20 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 Gene3D G3DSA:3.40.630.10 19 196 4.0E-51 T 22-04-2016 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 Gene3D G3DSA:3.40.630.10 342 401 4.0E-51 T 22-04-2016 TRD_RS04820 5233d2db2f62730fdf9e90d8665ca853 407 SUPERFAMILY SSF55031 187 297 3.79E-19 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS02295 541621bebde4e76e321794e625ff620a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.62E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.62E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.62E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 Gene3D G3DSA:1.10.10.10 2 83 1.7E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02295 541621bebde4e76e321794e625ff620a 299 Gene3D G3DSA:3.40.190.10 91 177 5.2E-19 T 22-04-2016 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 SUPERFAMILY SSF46785 3 112 4.26E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02295 541621bebde4e76e321794e625ff620a 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 6.8E-26 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 PANTHER PTHR30126 3 291 2.1E-103 T 22-04-2016 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 Pfam PF03466 LysR substrate binding domain 91 293 2.1E-55 T 22-04-2016 IPR005119 LysR, substrate-binding TRD_RS02295 541621bebde4e76e321794e625ff620a 299 SUPERFAMILY SSF53850 92 294 2.67E-49 T 22-04-2016 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 Gene3D G3DSA:3.40.190.10 178 265 6.4E-28 T 22-04-2016 TRD_RS02295 541621bebde4e76e321794e625ff620a 299 PANTHER PTHR30126:SF5 3 291 2.1E-103 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 312 324 - T 22-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 SUPERFAMILY SSF51412 25 109 1.57E-129 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 SUPERFAMILY SSF51412 235 497 1.57E-129 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 PIRSF PIRSF000130 18 507 5.2E-217 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 Gene3D G3DSA:3.20.20.70 25 505 2.9E-213 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 27 493 7.1E-171 T 22-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 27 506 89.542 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 Pfam PF00571 CBS domain 168 223 3.6E-9 T 22-04-2016 IPR000644 CBS domain TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 Pfam PF00571 CBS domain 114 159 9.5E-12 T 22-04-2016 IPR000644 CBS domain TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 SMART SM00116 176 224 6.5E-8 T 22-04-2016 IPR000644 CBS domain TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 SMART SM00116 115 163 8.6E-10 T 22-04-2016 IPR000644 CBS domain TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 PANTHER PTHR11911:SF6 12 299 3.8E-250 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 PANTHER PTHR11911:SF6 317 505 3.8E-250 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 SUPERFAMILY SSF54631 112 223 3.79E-33 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 PANTHER PTHR11911 12 299 3.8E-250 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 PANTHER PTHR11911 317 505 3.8E-250 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 SMART SM01240 26 493 0.0 T 22-04-2016 TRD_RS06750 f1df3891ad2d4edd0ce50d62aaa8fb4d 508 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 27 474 6.1E-197 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 SUPERFAMILY SSF103025 4 285 1.21E-106 T 22-04-2016 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 270 360 5.1E-27 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:3.30.70.1400 54 141 9.1E-33 T 22-04-2016 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Pfam PF01571 Aminomethyltransferase folate-binding domain 8 263 1.0E-98 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:3.30.1360.120 146 240 1.6E-52 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:3.30.1360.120 4 53 1.6E-52 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 SUPERFAMILY SSF101790 277 368 1.96E-22 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 4 367 3.1E-127 T 22-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 PIRSF PIRSF006487 1 375 6.8E-99 T 22-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Gene3D G3DSA:2.40.30.110 286 369 1.0E-24 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 PANTHER PTHR13847:SF209 3 364 3.8E-66 T 22-04-2016 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 Hamap MF_00259 Aminomethyltransferase [gcvT]. 2 367 47.844 T 22-04-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS03430 357e0f6978583acdf910c0627fd6b9ff 375 PANTHER PTHR13847 3 364 3.8E-66 T 22-04-2016 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 SUPERFAMILY SSF51556 200 488 2.25E-43 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 SUPERFAMILY SSF51556 61 124 2.25E-43 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 PANTHER PTHR22642 4 535 8.4E-175 T 22-04-2016 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:2.30.40.10 466 500 3.7E-5 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 PANTHER PTHR22642:SF2 4 535 8.4E-175 T 22-04-2016 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:2.30.40.10 4 63 1.6E-18 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:2.30.40.10 501 530 1.6E-18 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 Pfam PF07969 Amidohydrolase family 50 527 5.3E-119 T 22-04-2016 IPR013108 Amidohydrolase 3 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 SUPERFAMILY SSF51338 1 62 5.94E-22 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 SUPERFAMILY SSF51338 488 531 5.94E-22 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:3.20.20.140 65 83 2.0E-34 T 22-04-2016 TRD_RS01795 78facea0aaea1fee4d385b348053bfe3 536 Gene3D G3DSA:3.20.20.140 202 465 2.0E-34 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 Gene3D G3DSA:3.40.630.10 11 185 1.2E-50 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 Gene3D G3DSA:3.40.630.10 293 377 1.2E-50 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 SUPERFAMILY SSF53187 12 194 1.57E-49 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 SUPERFAMILY SSF53187 304 378 1.57E-49 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 SUPERFAMILY SSF55031 185 294 7.46E-22 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 PANTHER PTHR11014:SF64 11 377 2.9E-109 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 PANTHER PTHR11014 11 377 2.9E-109 T 22-04-2016 TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 Pfam PF07687 Peptidase dimerisation domain 182 273 3.6E-19 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 Gene3D G3DSA:3.30.70.360 186 273 2.5E-25 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 PIRSF PIRSF037238 1 378 3.2E-129 T 22-04-2016 IPR017150 Peptidase M20, glutamate carboxypeptidase TRD_RS06830 cbc3ecff7933bd978fe4964dd42462eb 378 Pfam PF01546 Peptidase family M20/M25/M40 83 376 1.2E-24 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 TRD_RS00720 d66c7e07553ba66bc4945fdc6b5899f8 255 Gene3D G3DSA:3.40.50.620 1 253 2.8E-50 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00720 d66c7e07553ba66bc4945fdc6b5899f8 255 PANTHER PTHR21294:SF0 1 255 9.4E-40 T 22-04-2016 TRD_RS00720 d66c7e07553ba66bc4945fdc6b5899f8 255 PANTHER PTHR21294 1 255 9.4E-40 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 TRD_RS00720 d66c7e07553ba66bc4945fdc6b5899f8 255 SMART SM00893 23 211 1.1E-21 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS00720 d66c7e07553ba66bc4945fdc6b5899f8 255 SUPERFAMILY SSF52402 1 250 2.09E-42 T 22-04-2016 TRD_RS00720 d66c7e07553ba66bc4945fdc6b5899f8 255 Pfam PF01012 Electron transfer flavoprotein domain 26 209 2.5E-25 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 9 83 1.9E-28 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 Gene3D G3DSA:3.30.1280.10 7 86 3.6E-30 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 PANTHER PTHR34696 5 87 1.2E-26 T 22-04-2016 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 15 84 2.0E-18 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 8 85 1.4E-26 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 SUPERFAMILY SSF82697 6 83 2.79E-25 T 22-04-2016 TRD_RS03410 db28ba04deb27613536d00fba6a475b0 87 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 7 84 21.182 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 SMART SM00382 195 334 1.5E-25 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 SUPERFAMILY SSF52540 158 426 1.57E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 Gene3D G3DSA:1.10.8.60 341 406 3.4E-28 T 22-04-2016 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 630 38.002 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 ProSitePatterns PS00674 AAA-protein family signature. 302 320 - T 22-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 112 602 2.2E-235 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 PANTHER PTHR23076 13 610 0.0 T 22-04-2016 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 199 330 2.3E-45 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 SUPERFAMILY SSF140990 414 607 1.05E-73 T 22-04-2016 TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 Gene3D G3DSA:3.40.50.300 158 340 1.1E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01380 13eb85bc1d2a1b33aebadf44e237a396 652 Pfam PF01434 Peptidase family M41 394 600 7.1E-81 T 22-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 Gene3D G3DSA:3.10.180.10 159 299 1.8E-35 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 PANTHER PTHR21366:SF10 10 85 2.8E-89 T 22-04-2016 TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 PANTHER PTHR21366:SF10 199 324 2.8E-89 T 22-04-2016 TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 SUPERFAMILY SSF54593 14 279 6.57E-39 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 Gene3D G3DSA:3.10.180.10 15 139 9.4E-32 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 PANTHER PTHR21366 10 85 2.8E-89 T 22-04-2016 TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 PANTHER PTHR21366 199 324 2.8E-89 T 22-04-2016 TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 123 2.3E-5 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS04160 330ac2d6e02d6f8adbbd533ffe795676 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 159 277 8.9E-14 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 139 8.9E-47 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 SUPERFAMILY SSF51735 139 317 3.09E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 PANTHER PTHR10160 1 364 2.2E-176 T 22-04-2016 TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 Gene3D G3DSA:3.40.50.1770 2 172 1.6E-64 T 22-04-2016 TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 SMART SM01003 4 139 2.6E-67 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 Gene3D G3DSA:3.40.50.1770 202 363 2.6E-34 T 22-04-2016 TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 22-04-2016 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 PANTHER PTHR10160:SF19 1 364 2.2E-176 T 22-04-2016 TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 SUPERFAMILY SSF52283 2 170 8.5E-54 T 22-04-2016 TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 Gene3D G3DSA:3.40.50.720 173 201 1.9E-5 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 SMART SM01002 148 310 4.5E-81 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain TRD_RS02220 10db74ea3654093c240ae2da7185c2d1 380 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 365 7.8E-71 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain TRD_RS00280 ea75e28ee512d61017ff06e816671759 338 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 334 6.3E-92 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS00280 ea75e28ee512d61017ff06e816671759 338 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 23 337 21.194 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS00280 ea75e28ee512d61017ff06e816671759 338 Pfam PF00953 Glycosyl transferase family 4 97 261 1.0E-36 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS00280 ea75e28ee512d61017ff06e816671759 338 PANTHER PTHR22926:SF5 1 335 7.6E-121 T 22-04-2016 TRD_RS00280 ea75e28ee512d61017ff06e816671759 338 PANTHER PTHR22926 1 335 7.6E-121 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS03475 885f8605ea86d8f6470a9da0f7a1fe5f 298 Gene3D G3DSA:3.30.2010.10 70 158 1.6E-30 T 22-04-2016 TRD_RS03475 885f8605ea86d8f6470a9da0f7a1fe5f 298 Hamap MF_00188 Protease HtpX [htpX]. 14 290 26.243 T 22-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 TRD_RS03475 885f8605ea86d8f6470a9da0f7a1fe5f 298 Pfam PF01435 Peptidase family M48 78 290 2.3E-38 T 22-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 TRD_RS03475 885f8605ea86d8f6470a9da0f7a1fe5f 298 PANTHER PTHR10120:SF19 13 295 4.2E-74 T 22-04-2016 TRD_RS03475 885f8605ea86d8f6470a9da0f7a1fe5f 298 PANTHER PTHR10120 13 295 4.2E-74 T 22-04-2016 TRD_RS01255 0c3f623357549386e5bdbed996240fb5 541 PANTHER PTHR30121 21 521 6.8E-119 T 22-04-2016 TRD_RS01255 0c3f623357549386e5bdbed996240fb5 541 Pfam PF01935 Domain of unknown function DUF87 151 379 6.9E-31 T 22-04-2016 IPR002789 Helicase HerA, central domain TRD_RS01255 0c3f623357549386e5bdbed996240fb5 541 Gene3D G3DSA:3.40.50.300 156 235 1.2E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01255 0c3f623357549386e5bdbed996240fb5 541 Gene3D G3DSA:3.40.50.300 340 517 1.2E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01255 0c3f623357549386e5bdbed996240fb5 541 PANTHER PTHR30121:SF3 21 521 6.8E-119 T 22-04-2016 TRD_RS01255 0c3f623357549386e5bdbed996240fb5 541 SUPERFAMILY SSF52540 146 520 7.53E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 10 454 47.068 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 PIRSF PIRSF000485 7 465 7.7E-172 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 PANTHER PTHR11907 8 466 1.2E-232 T 22-04-2016 TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 SUPERFAMILY SSF56235 11 253 3.17E-64 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 Pfam PF00156 Phosphoribosyl transferase domain 275 382 2.9E-8 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 Gene3D G3DSA:3.60.20.10 11 254 4.3E-63 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 PANTHER PTHR11907:SF0 8 466 1.2E-232 T 22-04-2016 TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 Gene3D G3DSA:3.40.50.2020 269 434 3.5E-41 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 11 453 2.2E-153 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 SUPERFAMILY SSF53271 247 462 2.88E-72 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS03425 a9f1d49b774fcf701b201f322612e0ba 490 Pfam PF13522 Glutamine amidotransferase domain 75 204 2.4E-18 T 22-04-2016 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 PANTHER PTHR26402:SF50 4 228 8.0E-70 T 22-04-2016 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 Gene3D G3DSA:3.40.50.2300 2 122 1.8E-36 T 22-04-2016 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 225 1.6E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 SMART SM00448 4 114 3.1E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 SUPERFAMILY SSF52172 1 174 1.19E-38 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 Pfam PF00072 Response regulator receiver domain 6 115 3.2E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 SMART SM00862 149 225 6.1E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 Gene3D G3DSA:1.10.10.10 127 227 6.4E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02880 2aa91ff951970bd405838114c08e110c 234 PANTHER PTHR26402 4 228 8.0E-70 T 22-04-2016 TRD_RS08845 0256afe26dcf8a376245bf5aa182a981 385 Pfam PF00296 Luciferase-like monooxygenase 24 355 1.5E-53 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08845 0256afe26dcf8a376245bf5aa182a981 385 Gene3D G3DSA:3.20.20.30 30 376 1.0E-61 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08845 0256afe26dcf8a376245bf5aa182a981 385 SUPERFAMILY SSF51679 32 376 3.93E-58 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS08845 0256afe26dcf8a376245bf5aa182a981 385 PANTHER PTHR30011 4 377 1.5E-41 T 22-04-2016 TRD_RS05720 f976ba49fbdb600fb67a04dce947c4c0 202 Pfam PF00578 AhpC/TSA family 59 173 4.5E-24 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 TRD_RS05720 f976ba49fbdb600fb67a04dce947c4c0 202 PANTHER PTHR10681:SF104 58 202 1.1E-31 T 22-04-2016 TRD_RS05720 f976ba49fbdb600fb67a04dce947c4c0 202 ProSitePatterns PS00194 Thioredoxin family active site. 86 104 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 TRD_RS05720 f976ba49fbdb600fb67a04dce947c4c0 202 Gene3D G3DSA:3.40.30.10 19 194 2.7E-47 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS05720 f976ba49fbdb600fb67a04dce947c4c0 202 PANTHER PTHR10681 58 202 1.1E-31 T 22-04-2016 TRD_RS05720 f976ba49fbdb600fb67a04dce947c4c0 202 SUPERFAMILY SSF52833 17 192 1.89E-40 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS09040 b36a6e832c94cd4b70be4e92d4598406 254 PANTHER PTHR21343:SF9 1 247 2.6E-90 T 22-04-2016 TRD_RS09040 b36a6e832c94cd4b70be4e92d4598406 254 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 4 198 9.2E-35 T 22-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 TRD_RS09040 b36a6e832c94cd4b70be4e92d4598406 254 SUPERFAMILY SSF52317 16 216 2.08E-21 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS09040 b36a6e832c94cd4b70be4e92d4598406 254 PANTHER PTHR21343 1 247 2.6E-90 T 22-04-2016 TRD_RS09040 b36a6e832c94cd4b70be4e92d4598406 254 Gene3D G3DSA:3.40.50.880 20 210 9.9E-13 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 Pfam PF05239 PRC-barrel domain 108 178 8.5E-9 T 22-04-2016 IPR027275 PRC-barrel domain TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 Gene3D G3DSA:2.30.30.240 111 179 2.4E-22 T 22-04-2016 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 Pfam PF01782 RimM N-terminal domain 23 102 2.3E-20 T 22-04-2016 IPR002676 RimM protein GO:0006364 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 PANTHER PTHR33692 19 178 2.8E-48 T 22-04-2016 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 Gene3D G3DSA:2.40.30.60 18 102 1.6E-18 T 22-04-2016 IPR002676 RimM protein GO:0006364 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 20 181 25.004 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 21 179 1.2E-43 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 PANTHER PTHR33692:SF1 19 178 2.8E-48 T 22-04-2016 TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 SUPERFAMILY SSF50346 111 179 2.94E-19 T 22-04-2016 IPR011033 PRC-barrel-like TRD_RS00540 03b1abf5b8acc712f6bf9f41df987a4f 184 SUPERFAMILY SSF50447 20 102 2.24E-18 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 TIGRFAM TIGR01351 adk: adenylate kinase 7 221 2.1E-68 T 22-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 Pfam PF05191 Adenylate kinase, active site lid 136 171 2.5E-16 T 22-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 ProSitePatterns PS00113 Adenylate kinase signature. 90 101 - T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 PANTHER PTHR23359 7 225 1.9E-82 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 SUPERFAMILY SSF52540 6 225 5.33E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 90 106 1.8E-27 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 169 184 1.8E-27 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 36 50 1.8E-27 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 8 21 1.8E-27 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 PRINTS PR00094 Adenylate kinase signature 186 200 1.8E-27 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 Hamap MF_00235 Adenylate kinase [adk]. 5 222 42.46 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 Pfam PF00406 Adenylate kinase 9 198 2.2E-41 T 22-04-2016 TRD_RS04425 ea4fb820f4263ccb311758924efafd99 233 Gene3D G3DSA:3.40.50.300 5 227 1.6E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06325 1b697ae54ff82ad11a32846d68901cc0 398 PANTHER PTHR23505 5 368 6.8E-47 T 22-04-2016 TRD_RS06325 1b697ae54ff82ad11a32846d68901cc0 398 Gene3D G3DSA:1.20.1250.20 12 183 3.9E-28 T 22-04-2016 TRD_RS06325 1b697ae54ff82ad11a32846d68901cc0 398 Gene3D G3DSA:1.20.1250.20 210 385 2.2E-16 T 22-04-2016 TRD_RS06325 1b697ae54ff82ad11a32846d68901cc0 398 Pfam PF07690 Major Facilitator Superfamily 17 348 1.5E-35 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS06325 1b697ae54ff82ad11a32846d68901cc0 398 SUPERFAMILY SSF103473 10 383 2.35E-52 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS06325 1b697ae54ff82ad11a32846d68901cc0 398 PANTHER PTHR23505:SF8 5 368 6.8E-47 T 22-04-2016 TRD_RS02750 4194ba0a3686fed85099e8a1205346d8 112 Gene3D G3DSA:2.60.40.420 1 109 2.1E-16 T 22-04-2016 IPR008972 Cupredoxin TRD_RS02750 4194ba0a3686fed85099e8a1205346d8 112 Pfam PF06525 Sulfocyanin (SoxE) domain 17 109 3.9E-5 T 22-04-2016 IPR010532 Sulfocyanin GO:0005507|GO:0055114 TRD_RS02750 4194ba0a3686fed85099e8a1205346d8 112 SUPERFAMILY SSF49503 6 107 3.6E-12 T 22-04-2016 IPR008972 Cupredoxin TRD_RS05160 ee481414257f99441242ebf0b7953012 93 Pfam PF13937 Domain of unknown function (DUF4212) 14 90 5.5E-30 T 22-04-2016 IPR019886 Sodium symporter small subunit, predicted TRD_RS05160 ee481414257f99441242ebf0b7953012 93 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 15 92 5.5E-27 T 22-04-2016 IPR019886 Sodium symporter small subunit, predicted TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 PANTHER PTHR32108:SF0 1 321 1.6E-103 T 22-04-2016 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 248 304 4.0E-5 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:2.170.120.12 62 168 1.1E-40 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 SMART SM00662 18 225 4.3E-81 T 22-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF56553 48 169 7.67E-40 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:1.10.150.20 248 304 1.6E-12 T 22-04-2016 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF47789 248 306 5.89E-12 T 22-04-2016 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF55257 9 48 1.57E-28 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 SUPERFAMILY SSF55257 170 221 1.57E-28 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 248 300 1.1E-12 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 24 218 7.2E-22 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:3.30.1360.10 9 61 1.7E-10 T 22-04-2016 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 18 303 2.5E-94 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Gene3D G3DSA:3.30.1360.10 171 222 1.8E-4 T 22-04-2016 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 308 31.942 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 PANTHER PTHR32108 1 321 1.6E-103 T 22-04-2016 TRD_RS04390 3d965d794817611ba5816d8cb7e55995 326 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 59 152 1.4E-19 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Pfam PF02151 UvrB/uvrC motif 419 448 7.6E-7 T 22-04-2016 IPR001943 UVR domain GO:0005515 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 718 797 2.7E-29 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 PANTHER PTHR11638 1 811 0.0 T 22-04-2016 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 206 334 1.3E-13 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.6E-18 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 19 67 3.6E-18 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:3.40.50.300 168 341 6.6E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 SUPERFAMILY SSF52540 485 804 2.04E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Pfam PF07724 AAA domain (Cdc48 subfamily) 535 711 1.0E-52 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 SUPERFAMILY SSF52540 161 469 4.5E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 540 558 2.0E-40 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 585 603 2.0E-40 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 647 661 2.0E-40 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 614 632 2.0E-40 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 PANTHER PTHR11638:SF18 1 811 0.0 T 22-04-2016 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 SUPERFAMILY SSF81923 6 153 2.83E-35 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:1.10.8.60 343 427 1.5E-32 T 22-04-2016 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:1.10.8.60 730 809 2.4E-34 T 22-04-2016 TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 SMART SM01086 718 807 5.1E-42 T 22-04-2016 IPR019489 Clp ATPase, C-terminal TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:3.40.50.300 701 729 1.8E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:3.40.50.300 491 662 1.8E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 SMART SM00382 200 344 1.0E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 SMART SM00382 536 679 5.2E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS04770 088e8f26bc3049ecf936317df44b909c 817 Gene3D G3DSA:1.10.1780.10 5 147 1.0E-48 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 Gene3D G3DSA:3.40.50.970 9 203 9.9E-71 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 SUPERFAMILY SSF52518 8 213 1.67E-62 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 Gene3D G3DSA:3.40.50.920 204 333 7.1E-44 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 SUPERFAMILY SSF52922 198 333 1.57E-40 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 Pfam PF02779 Transketolase, pyrimidine binding domain 10 179 3.4E-41 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 SMART SM00861 6 181 7.9E-54 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 PANTHER PTHR11624:SF77 11 333 2.6E-151 T 22-04-2016 TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 Pfam PF02780 Transketolase, C-terminal domain 203 325 7.3E-37 T 22-04-2016 IPR033248 Transketolase, C-terminal domain TRD_RS08440 bbd4cb20ba9be7274134edc21cff8190 339 PANTHER PTHR11624 11 333 2.6E-151 T 22-04-2016 IPR033247 Transketolase family TRD_RS08555 edf588898fcd18a52e9171f76fd380c7 388 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 66 350 5.3E-98 T 22-04-2016 IPR011862 Phosphate binding protein GO:0006810 TRD_RS08555 edf588898fcd18a52e9171f76fd380c7 388 SUPERFAMILY SSF53850 85 363 4.17E-83 T 22-04-2016 TRD_RS08555 edf588898fcd18a52e9171f76fd380c7 388 PANTHER PTHR30570:SF1 65 386 6.3E-105 T 22-04-2016 TRD_RS08555 edf588898fcd18a52e9171f76fd380c7 388 Pfam PF12849 PBP superfamily domain 79 337 2.8E-38 T 22-04-2016 IPR024370 PBP domain TRD_RS08555 edf588898fcd18a52e9171f76fd380c7 388 Gene3D G3DSA:3.40.190.10 86 231 3.7E-40 T 22-04-2016 TRD_RS08555 edf588898fcd18a52e9171f76fd380c7 388 PANTHER PTHR30570 65 386 6.3E-105 T 22-04-2016 TRD_RS04190 e445cb8d93c4347bdfae0af25b8746da 349 PANTHER PTHR30387 63 349 1.3E-73 T 22-04-2016 TRD_RS04190 e445cb8d93c4347bdfae0af25b8746da 349 PANTHER PTHR30387:SF2 63 349 1.3E-73 T 22-04-2016 TRD_RS04190 e445cb8d93c4347bdfae0af25b8746da 349 SUPERFAMILY SSF51658 51 338 5.94E-49 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS04190 e445cb8d93c4347bdfae0af25b8746da 349 Gene3D G3DSA:3.20.20.150 3 342 4.1E-108 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS04190 e445cb8d93c4347bdfae0af25b8746da 349 Pfam PF03786 D-mannonate dehydratase (UxuA) 161 340 5.9E-59 T 22-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 TRD_RS04190 e445cb8d93c4347bdfae0af25b8746da 349 Pfam PF03786 D-mannonate dehydratase (UxuA) 58 158 1.4E-20 T 22-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 PANTHER PTHR11751:SF306 15 386 2.8E-150 T 22-04-2016 TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 SUPERFAMILY SSF53383 4 388 1.99E-123 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 Gene3D G3DSA:3.90.1150.10 258 388 2.5E-43 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 Gene3D G3DSA:3.40.640.10 47 257 2.8E-74 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 Pfam PF00155 Aminotransferase class I and II 33 383 1.6E-72 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 TRD_RS06105 cd1b76eeee5c5c00cd9f16f67ac11c60 389 PANTHER PTHR11751 15 386 2.8E-150 T 22-04-2016 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SUPERFAMILY SSF46894 179 250 7.14E-22 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SMART SM00448 32 145 7.5E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PANTHER PTHR26402:SF151 32 252 5.4E-68 T 22-04-2016 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Pfam PF00196 Bacterial regulatory proteins, luxR family 189 243 1.5E-20 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SMART SM00421 187 244 8.6E-25 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Pfam PF00072 Response regulator receiver domain 34 145 4.2E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 SUPERFAMILY SSF52172 31 160 2.13E-31 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 220 232 2.7E-14 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 204 2.7E-14 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 220 2.7E-14 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Gene3D G3DSA:1.10.10.10 191 250 1.8E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 Gene3D G3DSA:3.40.50.2300 31 190 1.1E-35 T 22-04-2016 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 ProSitePatterns PS00622 LuxR-type HTH domain signature. 204 231 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS05530 dbd2bcfdb0314b5e2a4d2f79e162de79 261 PANTHER PTHR26402 32 252 5.4E-68 T 22-04-2016 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 PANTHER PTHR11938:SF1 15 1493 0.0 T 22-04-2016 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF00310 Glutamine amidotransferases class-II 25 444 1.2E-169 T 22-04-2016 IPR017932 Glutamine amidotransferase type 2 domain TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF01645 Conserved region in glutamate synthase 813 1175 1.1E-150 T 22-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:2.160.20.60 1234 1490 2.1E-93 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 PANTHER PTHR11938 15 1493 0.0 T 22-04-2016 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:3.20.20.70 826 1196 4.1E-167 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF01493 GXGXG motif 1257 1444 9.0E-73 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:3.60.20.10 25 452 1.1E-167 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 SUPERFAMILY SSF56235 25 446 1.37E-146 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 SUPERFAMILY SSF51395 461 1210 4.89E-249 T 22-04-2016 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Pfam PF04898 Glutamate synthase central domain 472 753 1.7E-105 T 22-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 SUPERFAMILY SSF69336 1232 1483 8.76E-86 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 TRD_RS05130 58718e4fe75bbf2ba68c0005e6c1e93e 1508 Gene3D G3DSA:3.20.20.70 462 799 6.4E-97 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS06575 4ffc351784fa99a088640c9d5dd5854b 350 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 299 3.1E-35 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 TRD_RS06575 4ffc351784fa99a088640c9d5dd5854b 350 PANTHER PTHR30482 1 339 1.5E-80 T 22-04-2016 TRD_RS06575 4ffc351784fa99a088640c9d5dd5854b 350 PANTHER PTHR30482:SF2 1 339 1.5E-80 T 22-04-2016 TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4 223 5.8E-67 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 225 6.9E-64 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 SUPERFAMILY SSF53448 4 224 5.84E-56 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 2 226 29.496 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 PANTHER PTHR32125 4 228 8.0E-68 T 22-04-2016 TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 PANTHER PTHR32125:SF4 4 228 8.0E-68 T 22-04-2016 TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 Gene3D G3DSA:3.90.550.10 2 226 2.5E-71 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS08075 ebbc595f76674315dbe02a9edada68d3 231 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 100 107 - T 22-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 TRD_RS06940 9d7b2c90ad7ebe18225221f5fe0a12a9 244 PANTHER PTHR31272 18 240 3.0E-23 T 22-04-2016 TRD_RS06940 9d7b2c90ad7ebe18225221f5fe0a12a9 244 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 24 238 3.9E-20 T 22-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 Gene3D G3DSA:1.10.1660.10 255 361 1.3E-13 T 22-04-2016 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 SMART SM00422 254 323 0.0047 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 Gene3D G3DSA:1.10.443.10 130 239 7.4E-4 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 38 102 1.3E-11 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 SUPERFAMILY SSF46955 254 361 2.47E-14 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 SUPERFAMILY SSF56349 29 239 1.06E-13 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 Pfam PF13411 MerR HTH family regulatory protein 255 316 2.1E-12 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS00240 cbc48072c44909bfec7a8509fb63bfec 375 Gene3D G3DSA:1.10.150.130 37 108 1.2E-14 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal TRD_RS04940 e4112a2ed5c45ebf46a8e741d8b83043 289 SUPERFAMILY SSF53335 28 215 5.88E-36 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS04940 e4112a2ed5c45ebf46a8e741d8b83043 289 Pfam PF08241 Methyltransferase domain 50 140 9.6E-23 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 TRD_RS04940 e4112a2ed5c45ebf46a8e741d8b83043 289 PANTHER PTHR10108 45 195 9.4E-25 T 22-04-2016 TRD_RS04940 e4112a2ed5c45ebf46a8e741d8b83043 289 Gene3D G3DSA:3.40.50.150 35 213 2.0E-36 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS04940 e4112a2ed5c45ebf46a8e741d8b83043 289 PANTHER PTHR10108:SF779 45 195 9.4E-25 T 22-04-2016 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 Gene3D G3DSA:2.40.10.170 4 80 6.5E-33 T 22-04-2016 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 SMART SM00382 148 333 1.3E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 PANTHER PTHR15184 1 470 0.0 T 22-04-2016 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 136 348 1.8E-68 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 SUPERFAMILY SSF52540 82 353 1.42E-94 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 Gene3D G3DSA:1.10.1140.10 351 469 7.7E-55 T 22-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 Gene3D G3DSA:3.40.50.300 81 350 3.4E-110 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 10 78 1.0E-24 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 SUPERFAMILY SSF47917 351 467 7.59E-53 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 SUPERFAMILY SSF50615 7 80 1.0E-26 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 7 466 6.6E-250 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 339 348 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 Hamap MF_01347 ATP synthase subunit beta [atpB]. 5 466 59.204 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05735 2c916ed52b9fa79416c60f195e81cdb7 470 PANTHER PTHR15184:SF8 1 470 0.0 T 22-04-2016 TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 PIRSF PIRSF002122 3 156 7.6E-64 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.0E-65 T 22-04-2016 IPR023798 Ribosomal protein S7 domain TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 Gene3D G3DSA:1.10.455.10 7 156 4.4E-68 T 22-04-2016 IPR023798 Ribosomal protein S7 domain TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.727 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 SUPERFAMILY SSF47973 1 149 1.31E-61 T 22-04-2016 IPR023798 Ribosomal protein S7 domain TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 22-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 PANTHER PTHR11205 1 156 3.9E-93 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 TRD_RS04545 b0f157584addc8bd5471f1967954be72 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.1E-68 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 TRD_RS06370 1de43657727a1e0cbd171886d16757f4 345 PANTHER PTHR30011 13 277 6.4E-36 T 22-04-2016 TRD_RS06370 1de43657727a1e0cbd171886d16757f4 345 SUPERFAMILY SSF51679 51 341 5.1E-53 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS06370 1de43657727a1e0cbd171886d16757f4 345 Pfam PF00296 Luciferase-like monooxygenase 63 271 5.0E-41 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS06370 1de43657727a1e0cbd171886d16757f4 345 Gene3D G3DSA:3.20.20.30 50 341 1.6E-58 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 PANTHER PTHR11908 4 572 9.1E-280 T 22-04-2016 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 PANTHER PTHR11908 614 789 9.1E-280 T 22-04-2016 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 151 723 2.4E-187 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 288 362 1.8E-41 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 124 179 1.8E-41 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 SUPERFAMILY SSF54665 4 156 6.54E-47 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 135 1.8E-30 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 SUPERFAMILY SSF56003 127 785 4.19E-198 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 464 597 4.3E-50 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 PANTHER PTHR11908:SF76 4 572 9.1E-280 T 22-04-2016 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 PANTHER PTHR11908:SF76 614 789 9.1E-280 T 22-04-2016 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 SMART SM01008 20 135 1.1E-48 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 638 785 2.3E-65 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 365 463 2.3E-65 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.30.365.10 180 286 1.7E-36 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS02670 2c17f7151a19e51730063b569c65c16d 791 Gene3D G3DSA:3.90.1170.50 4 123 2.5E-43 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PANTHER PTHR11206:SF90 7 22 2.1E-32 T 22-04-2016 TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PANTHER PTHR11206:SF90 232 456 2.1E-32 T 22-04-2016 TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PANTHER PTHR11206:SF90 486 506 2.1E-32 T 22-04-2016 TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PRINTS PR01806 Virulence factor MviN signature 154 178 1.9E-6 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PRINTS PR01806 Virulence factor MviN signature 276 302 1.9E-6 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PRINTS PR01806 Virulence factor MviN signature 69 85 1.9E-6 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PRINTS PR01806 Virulence factor MviN signature 178 199 1.9E-6 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 Pfam PF03023 MviN-like protein 48 486 7.4E-64 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 21 528 3.1E-71 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PANTHER PTHR11206 7 22 2.1E-32 T 22-04-2016 TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PANTHER PTHR11206 232 456 2.1E-32 T 22-04-2016 TRD_RS08610 ef7ff23bdc9871b5a54d9d885f8598e2 537 PANTHER PTHR11206 486 506 2.1E-32 T 22-04-2016 TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 Gene3D G3DSA:3.40.50.1000 4 215 4.8E-39 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 111 186 3.8E-13 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 3.7E-8 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 3.7E-8 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 3.7E-8 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 SUPERFAMILY SSF56784 5 221 8.68E-45 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 PANTHER PTHR12725 1 250 1.8E-45 T 22-04-2016 TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 191 2.7E-23 T 22-04-2016 IPR023214 HAD-like domain TRD_RS07785 db15ce8a686c2b318d9706126c58f174 254 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 111 191 2.4E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 295 307 - T 22-04-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 SUPERFAMILY SSF55920 139 363 3.93E-76 T 22-04-2016 IPR000994 Peptidase M24, structural domain TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 PANTHER PTHR10804:SF110 5 362 1.1E-88 T 22-04-2016 TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 Gene3D G3DSA:3.90.230.10 139 363 6.8E-79 T 22-04-2016 IPR000994 Peptidase M24, structural domain TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 Gene3D G3DSA:3.40.350.10 4 137 2.0E-19 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 Pfam PF00557 Metallopeptidase family M24 146 349 1.6E-66 T 22-04-2016 IPR000994 Peptidase M24, structural domain TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 Pfam PF01321 Creatinase/Prolidase N-terminal domain 6 138 5.8E-19 T 22-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 PANTHER PTHR10804 5 362 1.1E-88 T 22-04-2016 TRD_RS07950 ac81bcb1302991021e5eb68113c6a43c 367 SUPERFAMILY SSF53092 4 137 2.62E-19 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 175 183 - T 22-04-2016 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 Gene3D G3DSA:3.30.70.150 3 126 7.7E-38 T 22-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 PANTHER PTHR23321:SF19 15 302 1.0E-59 T 22-04-2016 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 PANTHER PTHR23321 15 302 1.0E-59 T 22-04-2016 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 12 123 5.3E-10 T 22-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 133 411 2.9E-89 T 22-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 Gene3D G3DSA:3.20.20.110 129 413 3.2E-85 T 22-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 SUPERFAMILY SSF51649 129 413 1.23E-94 T 22-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS00635 76d44e77bae8d748bf28c26b3338fe57 418 SUPERFAMILY SSF54966 3 127 3.14E-36 T 22-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 TRD_RS07795 607b2261a492480917bd765567ceb2dd 281 Pfam PF04321 RmlD substrate binding domain 3 278 2.2E-93 T 22-04-2016 IPR029903 RmlD-like substrate binding domain TRD_RS07795 607b2261a492480917bd765567ceb2dd 281 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 276 5.2E-93 T 22-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family TRD_RS07795 607b2261a492480917bd765567ceb2dd 281 PANTHER PTHR10491 3 279 6.2E-95 T 22-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family TRD_RS07795 607b2261a492480917bd765567ceb2dd 281 Gene3D G3DSA:3.40.50.720 3 227 1.2E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07795 607b2261a492480917bd765567ceb2dd 281 SUPERFAMILY SSF51735 3 277 2.61E-90 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07795 607b2261a492480917bd765567ceb2dd 281 PANTHER PTHR10491:SF4 3 279 6.2E-95 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 Gene3D G3DSA:3.40.50.740 347 499 1.4E-53 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 702 837 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 23 122 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 426 511 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 702 837 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 Gene3D G3DSA:3.40.228.10 4 121 1.2E-62 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 Gene3D G3DSA:3.40.228.10 180 290 1.2E-62 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 SUPERFAMILY SSF50692 708 837 8.61E-44 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 SUPERFAMILY SSF50692 658 680 8.61E-44 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 313 407 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 Gene3D G3DSA:2.40.40.20 640 837 2.1E-46 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 590 679 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 23 122 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 313 407 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 241 278 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 Pfam PF00384 Molybdopterin oxidoreductase 14 406 2.4E-20 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 590 679 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 241 278 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615 150 213 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 Pfam PF01568 Molydopterin dinucleotide binding domain 713 829 1.2E-16 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 150 213 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 PANTHER PTHR11615:SF126 426 511 6.2E-151 T 22-04-2016 TRD_RS09215 e9880ba9c6d44986bf91946304a685b3 846 SUPERFAMILY SSF53706 1 671 1.96E-191 T 22-04-2016 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 PANTHER PTHR36932:SF1 6 372 1.3E-50 T 22-04-2016 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 PANTHER PTHR36932 6 372 1.3E-50 T 22-04-2016 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 Gene3D G3DSA:3.40.50.980 95 253 2.3E-6 T 22-04-2016 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 SUPERFAMILY SSF56801 27 438 3.27E-36 T 22-04-2016 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 Pfam PF00501 AMP-binding enzyme 85 289 7.9E-9 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 Gene3D G3DSA:3.30.300.30 337 439 7.8E-18 T 22-04-2016 TRD_RS07890 c029b06c844d1f4323fcdabfe12b9c13 443 Pfam PF14535 AMP-binding enzyme C-terminal domain 347 436 4.6E-6 T 22-04-2016 IPR028154 AMP-dependent ligase, C-terminal TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.30.9.10 86 140 4.0E-31 T 22-04-2016 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.30.9.10 220 311 4.0E-31 T 22-04-2016 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.50.50.60 141 219 6.7E-66 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.50.50.60 3 82 6.7E-66 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 Gene3D G3DSA:3.50.50.60 312 372 6.7E-66 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 SUPERFAMILY SSF54373 222 311 8.73E-6 T 22-04-2016 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 SUPERFAMILY SSF51905 5 220 7.12E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 SUPERFAMILY SSF51905 312 377 7.12E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 Pfam PF01266 FAD dependent oxidoreductase 6 351 1.4E-73 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS04090 b156052e50b16eaeddfb45c4891f8243 382 PANTHER PTHR13847 3 382 3.4E-91 T 22-04-2016 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 Gene3D G3DSA:3.40.640.10 86 334 3.2E-23 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 Gene3D G3DSA:3.90.1150.10 335 445 3.6E-4 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 PIRSF PIRSF006815 1 447 3.1E-183 T 22-04-2016 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 SUPERFAMILY SSF53383 1 446 3.54E-120 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 1 446 47.198 T 22-04-2016 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 Pfam PF02347 Glycine cleavage system P-protein 5 442 2.0E-129 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 PANTHER PTHR11773 1 446 2.6E-218 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS03440 43251221ac72fcb56532c351629b0cc1 448 PANTHER PTHR11773:SF2 1 446 2.6E-218 T 22-04-2016 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 SUPERFAMILY SSF53335 5 113 9.12E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 SUPERFAMILY SSF53335 213 309 9.12E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 PIRSF PIRSF004486 1 310 7.7E-105 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 PANTHER PTHR11265:SF0 5 311 3.3E-142 T 22-04-2016 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 PANTHER PTHR11265 5 311 3.3E-142 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 Pfam PF01795 MraW methylase family 3 308 2.3E-106 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 308 2.5E-96 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 SUPERFAMILY SSF81799 114 213 1.31E-32 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 Gene3D G3DSA:1.10.150.170 113 215 4.8E-35 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 309 37.667 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 Gene3D G3DSA:3.40.50.150 5 110 4.2E-54 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00260 c21e1ebeca3dc130c4facfc61d9cbd22 314 Gene3D G3DSA:3.40.50.150 216 310 4.2E-54 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Pfam PF12146 Serine aminopeptidase, S33 266 487 1.3E-20 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:4.10.320.10 168 216 2.6E-22 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Pfam PF02817 e3 binding domain 172 207 2.7E-17 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:3.40.50.1820 218 365 2.8E-56 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:3.40.50.1820 404 510 2.8E-56 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF51230 49 131 3.27E-23 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 PRINTS PR00111 Alpha/beta hydrolase fold signature 275 290 4.2E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 PRINTS PR00111 Alpha/beta hydrolase fold signature 325 338 4.2E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 PRINTS PR00111 Alpha/beta hydrolase fold signature 450 464 4.2E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF53474 407 510 7.22E-57 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF53474 214 361 7.22E-57 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 PANTHER PTHR23151 33 216 6.9E-50 T 22-04-2016 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Gene3D G3DSA:2.40.50.100 48 131 7.0E-27 T 22-04-2016 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 SUPERFAMILY SSF47005 166 211 1.01E-13 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS06965 f88cfdeefbc42e290e03606134937c3d 518 Pfam PF00364 Biotin-requiring enzyme 53 124 1.9E-16 T 22-04-2016 IPR000089 Biotin/lipoyl attachment TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 Gene3D G3DSA:3.20.20.70 4 251 2.0E-107 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 PANTHER PTHR21235:SF2 1 254 2.2E-126 T 22-04-2016 TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 4.3E-116 T 22-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 PANTHER PTHR21235 1 254 2.2E-126 T 22-04-2016 TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 SUPERFAMILY SSF51366 1 252 1.26E-84 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 Pfam PF00977 Histidine biosynthesis protein 5 234 8.2E-89 T 22-04-2016 IPR006062 Histidine biosynthesis GO:0000105 TRD_RS00885 48b03d5696c15ed94253dc274b0371d7 260 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 49.37 T 22-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 565 586 - T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 SUPERFAMILY SSF51998 183 624 9.77E-162 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 SUPERFAMILY SSF51998 654 724 9.77E-162 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 103 180 5.1E-24 T 22-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 Gene3D G3DSA:3.20.70.20 680 717 2.4E-84 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 Gene3D G3DSA:3.20.70.20 575 620 2.4E-84 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 Gene3D G3DSA:3.20.70.20 362 520 2.4E-84 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 Gene3D G3DSA:3.20.70.20 95 305 2.4E-84 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 396 407 3.1E-44 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 472 494 3.1E-44 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 259 278 3.1E-44 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 575 602 3.1E-44 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 434 457 3.1E-44 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PRINTS PR01183 Ribonucleotide reductase large chain signature 500 523 3.1E-44 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 Pfam PF02867 Ribonucleotide reductase, barrel domain 184 719 2.7E-159 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 SUPERFAMILY SSF48168 25 182 2.75E-41 T 22-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 PANTHER PTHR11573 89 770 1.3E-257 T 22-04-2016 TRD_RS06625 fb333d65ed924c5afa39c9557b2cff0e 770 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 106 721 5.3E-193 T 22-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.10.410.10 438 527 8.7E-34 T 22-04-2016 TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.30.1510.10 124 240 2.5E-45 T 22-04-2016 TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 551 40.707 T 22-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 SUPERFAMILY SSF52540 7 549 3.19E-201 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 PANTHER PTHR10025 11 550 2.0E-272 T 22-04-2016 TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 Pfam PF01268 Formate--tetrahydrofolate ligase 7 550 3.6E-223 T 22-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.40.50.300 241 436 2.5E-122 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04130 11c6c0e95dd438cedf1d3425581b36f2 551 Gene3D G3DSA:3.40.50.300 9 123 2.5E-122 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 9 398 5.2E-138 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 Pfam PF02601 Exonuclease VII, large subunit 334 395 7.2E-9 T 22-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 Pfam PF02601 Exonuclease VII, large subunit 125 343 6.8E-79 T 22-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 PANTHER PTHR30008:SF0 1 403 2.6E-133 T 22-04-2016 TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 4 399 27.148 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 Pfam PF13742 OB-fold nucleic acid binding domain 9 102 3.2E-22 T 22-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 TRD_RS07965 6dd0752068725b321509c1e598b407a7 405 PANTHER PTHR30008 1 403 2.6E-133 T 22-04-2016 TRD_RS05465 c7b50dc5663f5a54a02ffd7a13dda3be 144 Gene3D G3DSA:3.90.1010.10 8 131 3.3E-26 T 22-04-2016 TRD_RS05465 c7b50dc5663f5a54a02ffd7a13dda3be 144 SUPERFAMILY SSF82649 8 129 7.06E-28 T 22-04-2016 TRD_RS05465 c7b50dc5663f5a54a02ffd7a13dda3be 144 PANTHER PTHR10093 11 135 2.1E-21 T 22-04-2016 TRD_RS05465 c7b50dc5663f5a54a02ffd7a13dda3be 144 Pfam PF01592 NifU-like N terminal domain 10 130 4.2E-23 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 TRD_RS05080 5b0e95289966ed7c0c5c7f8816f6f871 333 PANTHER PTHR21240 2 333 1.2E-70 T 22-04-2016 TRD_RS05080 5b0e95289966ed7c0c5c7f8816f6f871 333 Pfam PF04909 Amidohydrolase 3 325 8.1E-47 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS05080 5b0e95289966ed7c0c5c7f8816f6f871 333 Gene3D G3DSA:3.20.20.140 3 328 6.8E-96 T 22-04-2016 TRD_RS05080 5b0e95289966ed7c0c5c7f8816f6f871 333 SUPERFAMILY SSF51556 2 326 9.87E-86 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS13730 c7632596c95761076182bbbf74466f5a 328 Gene3D G3DSA:3.40.33.10 202 322 7.5E-7 T 22-04-2016 IPR014044 CAP domain TRD_RS13730 c7632596c95761076182bbbf74466f5a 328 SUPERFAMILY SSF55797 203 323 9.59E-18 T 22-04-2016 IPR014044 CAP domain TRD_RS13730 c7632596c95761076182bbbf74466f5a 328 PANTHER PTHR31157 202 323 8.4E-20 T 22-04-2016 TRD_RS13730 c7632596c95761076182bbbf74466f5a 328 Pfam PF00188 Cysteine-rich secretory protein family 206 322 1.4E-14 T 22-04-2016 IPR014044 CAP domain TRD_RS13730 c7632596c95761076182bbbf74466f5a 328 PANTHER PTHR31157:SF1 202 323 8.4E-20 T 22-04-2016 TRD_RS08460 4e9841dead9fc036fbe47a9a28ed7ce7 167 Gene3D G3DSA:3.40.30.10 2 151 5.8E-13 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS08460 4e9841dead9fc036fbe47a9a28ed7ce7 167 Pfam PF00578 AhpC/TSA family 8 128 2.3E-9 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 TRD_RS08460 4e9841dead9fc036fbe47a9a28ed7ce7 167 SUPERFAMILY SSF52833 4 164 1.3E-15 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS05535 18da2ca4305465adf6e573a3648d81c9 177 Pfam PF00293 NUDIX domain 41 150 2.7E-14 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 TRD_RS05535 18da2ca4305465adf6e573a3648d81c9 177 PANTHER PTHR11839 2 169 1.8E-53 T 22-04-2016 TRD_RS05535 18da2ca4305465adf6e573a3648d81c9 177 Gene3D G3DSA:3.90.79.10 6 171 1.6E-52 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS05535 18da2ca4305465adf6e573a3648d81c9 177 ProSitePatterns PS00893 Nudix box signature. 75 96 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 TRD_RS05535 18da2ca4305465adf6e573a3648d81c9 177 PANTHER PTHR11839:SF9 2 169 1.8E-53 T 22-04-2016 TRD_RS05535 18da2ca4305465adf6e573a3648d81c9 177 SUPERFAMILY SSF55811 8 174 1.25E-45 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 3 227 36.908 T 22-04-2016 IPR022877 Protein of unknown funcion UPF0173 TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 Pfam PF13483 Beta-lactamase superfamily domain 5 190 6.1E-23 T 22-04-2016 TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 PANTHER PTHR15032:SF12 3 228 6.1E-69 T 22-04-2016 TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 SUPERFAMILY SSF56281 3 212 7.73E-39 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 SMART SM00849 9 190 2.6E-19 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 PANTHER PTHR15032 3 228 6.1E-69 T 22-04-2016 TRD_RS01790 d67d91fb07ce1572ec4145d8203e6c0d 228 Gene3D G3DSA:3.60.15.10 3 227 3.2E-58 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS04155 e968f6e40df164a8b94ea97f263f4780 227 Gene3D G3DSA:3.50.30.40 23 181 1.2E-41 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04155 e968f6e40df164a8b94ea97f263f4780 227 PANTHER PTHR33254 10 208 1.2E-49 T 22-04-2016 TRD_RS04155 e968f6e40df164a8b94ea97f263f4780 227 Pfam PF03737 Demethylmenaquinone methyltransferase 33 173 3.0E-33 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04155 e968f6e40df164a8b94ea97f263f4780 227 PANTHER PTHR33254:SF5 10 208 1.2E-49 T 22-04-2016 TRD_RS04155 e968f6e40df164a8b94ea97f263f4780 227 SUPERFAMILY SSF89562 22 184 7.72E-41 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 PANTHER PTHR10291 85 321 1.7E-113 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 Pfam PF01255 Putative undecaprenyl diphosphate synthase 92 308 1.4E-79 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 85 308 2.2E-85 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 254 271 - T 22-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 SUPERFAMILY SSF64005 83 304 3.14E-84 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 85 309 40.474 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 TRD_RS04610 b6be573edf49d95a41c8e21ca2be9e9e 327 Gene3D G3DSA:3.40.1180.10 79 311 7.4E-96 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 22 106 8.6E-21 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 Gene3D G3DSA:1.10.443.10 129 299 7.9E-50 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 Pfam PF00589 Phage integrase family 130 298 2.0E-40 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 PANTHER PTHR30349 18 297 2.2E-88 T 22-04-2016 TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 PANTHER PTHR30349:SF5 18 297 2.2E-88 T 22-04-2016 TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 18 313 26.315 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 Gene3D G3DSA:1.10.150.130 18 115 1.9E-28 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal TRD_RS04870 30af08b6bbe3b849298c8d174269430a 331 SUPERFAMILY SSF56349 20 298 8.24E-56 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 PANTHER PTHR30135:SF3 2 437 1.4E-157 T 22-04-2016 TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 Gene3D G3DSA:3.40.50.10680 199 427 3.7E-54 T 22-04-2016 TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 PANTHER PTHR30135 2 437 1.4E-157 T 22-04-2016 TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 Hamap MF_00973 Gluconeogenesis factor. 116 427 35.571 T 22-04-2016 IPR010119 Gluconeogenesis factor TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 120 425 2.5E-108 T 22-04-2016 IPR010119 Gluconeogenesis factor TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 Pfam PF01933 Uncharacterised protein family UPF0052 120 401 8.4E-97 T 22-04-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 TRD_RS03555 0798a17563b5e58cb862df6242259d78 462 SUPERFAMILY SSF142338 118 422 1.28E-95 T 22-04-2016 TRD_RS07205 b1cb3bf31265a0fbc246264db1b4ab06 346 Gene3D G3DSA:1.10.10.10 18 77 5.0E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07205 b1cb3bf31265a0fbc246264db1b4ab06 346 PANTHER PTHR34580 10 337 9.0E-66 T 22-04-2016 TRD_RS07205 b1cb3bf31265a0fbc246264db1b4ab06 346 SUPERFAMILY SSF46785 19 77 1.77E-6 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07205 b1cb3bf31265a0fbc246264db1b4ab06 346 Pfam PF08279 HTH domain 20 74 8.2E-5 T 22-04-2016 IPR013196 Helix-turn-helix, type 11 TRD_RS07205 b1cb3bf31265a0fbc246264db1b4ab06 346 Pfam PF13280 WYL domain 154 328 1.6E-43 T 22-04-2016 IPR026881 WYL domain TRD_RS07205 b1cb3bf31265a0fbc246264db1b4ab06 346 PANTHER PTHR34580:SF3 10 337 9.0E-66 T 22-04-2016 TRD_RS00290 4051ea7d48518f31b8e186bc47d3a8ad 424 PANTHER PTHR30474:SF2 7 399 4.8E-127 T 22-04-2016 TRD_RS00290 4051ea7d48518f31b8e186bc47d3a8ad 424 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 26 378 1.1E-109 T 22-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 TRD_RS00290 4051ea7d48518f31b8e186bc47d3a8ad 424 Pfam PF01098 Cell cycle protein 28 378 1.2E-96 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 TRD_RS00290 4051ea7d48518f31b8e186bc47d3a8ad 424 PANTHER PTHR30474 7 399 4.8E-127 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 TRD_RS03290 4e5e70f4f167195e4f71aa747b9d5486 395 SUPERFAMILY SSF53383 3 386 3.23E-87 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS03290 4e5e70f4f167195e4f71aa747b9d5486 395 Pfam PF00266 Aminotransferase class-V 35 377 5.4E-63 T 22-04-2016 IPR000192 Aminotransferase class V domain TRD_RS03290 4e5e70f4f167195e4f71aa747b9d5486 395 Gene3D G3DSA:3.90.1150.10 277 386 3.0E-19 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS03290 4e5e70f4f167195e4f71aa747b9d5486 395 Gene3D G3DSA:3.40.640.10 31 276 8.2E-70 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS03290 4e5e70f4f167195e4f71aa747b9d5486 395 PANTHER PTHR11601 5 387 9.5E-89 T 22-04-2016 TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 Pfam PF00557 Metallopeptidase family M24 13 239 1.5E-50 T 22-04-2016 IPR000994 Peptidase M24, structural domain TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 SUPERFAMILY SSF55920 4 247 1.31E-79 T 22-04-2016 IPR000994 Peptidase M24, structural domain TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 6.2E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 6.2E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 6.2E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 6.2E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 248 1.7E-88 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 Hamap MF_01974 Methionine aminopeptidase [map]. 3 249 37.68 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 PANTHER PTHR10804 1 248 2.0E-110 T 22-04-2016 TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 PANTHER PTHR10804:SF41 1 248 2.0E-110 T 22-04-2016 TRD_RS04420 701779f17f95bac4c39ead389fc5b727 249 Gene3D G3DSA:3.90.230.10 4 248 2.0E-80 T 22-04-2016 IPR000994 Peptidase M24, structural domain TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 118 1.2E-10 T 22-04-2016 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 572 25.199 T 22-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 SUPERFAMILY SSF55874 2 213 9.43E-51 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 22-04-2016 IPR014762 DNA mismatch repair, conserved site TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 Pfam PF08676 MutL C terminal dimerisation domain 390 532 1.0E-40 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 2 307 6.9E-89 T 22-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 SMART SM00853 393 532 1.0E-41 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 210 326 3.6E-32 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 Gene3D G3DSA:3.30.230.10 203 326 7.0E-35 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 SUPERFAMILY SSF118116 389 574 8.24E-51 T 22-04-2016 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 SUPERFAMILY SSF54211 190 326 4.55E-32 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 Gene3D G3DSA:3.30.565.10 2 202 2.3E-71 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 PANTHER PTHR10073 3 575 6.7E-160 T 22-04-2016 TRD_RS07815 2f80658643950e842b02ba80fa300caf 575 SMART SM01340 208 327 5.8E-47 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS02510 6948c0026575c52c29712a08e7536eb4 258 Pfam PF00483 Nucleotidyl transferase 2 233 3.2E-49 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 TRD_RS02510 6948c0026575c52c29712a08e7536eb4 258 Gene3D G3DSA:3.90.550.10 1 239 2.4E-63 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS02510 6948c0026575c52c29712a08e7536eb4 258 SUPERFAMILY SSF53448 1 236 3.82E-69 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS02510 6948c0026575c52c29712a08e7536eb4 258 PANTHER PTHR22572:SF13 2 232 1.2E-90 T 22-04-2016 TRD_RS02510 6948c0026575c52c29712a08e7536eb4 258 PANTHER PTHR22572 2 232 1.2E-90 T 22-04-2016 TRD_RS09105 a7e849473f711507ef68a4625eaf2900 238 PANTHER PTHR10366 5 211 7.8E-40 T 22-04-2016 TRD_RS09105 a7e849473f711507ef68a4625eaf2900 238 SUPERFAMILY SSF51735 1 233 3.42E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS09105 a7e849473f711507ef68a4625eaf2900 238 PANTHER PTHR10366:SF367 5 211 7.8E-40 T 22-04-2016 TRD_RS09105 a7e849473f711507ef68a4625eaf2900 238 Gene3D G3DSA:3.40.50.720 2 197 1.3E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS09105 a7e849473f711507ef68a4625eaf2900 238 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 165 2.9E-23 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 TRD_RS06400 7654cc1c278d9cc346e92ebe3108f0b7 310 PANTHER PTHR30535 2 288 3.8E-69 T 22-04-2016 TRD_RS06400 7654cc1c278d9cc346e92ebe3108f0b7 310 SUPERFAMILY SSF53807 2 288 1.26E-44 T 22-04-2016 TRD_RS06400 7654cc1c278d9cc346e92ebe3108f0b7 310 Pfam PF01497 Periplasmic binding protein 3 264 2.6E-17 T 22-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 TRD_RS06400 7654cc1c278d9cc346e92ebe3108f0b7 310 PANTHER PTHR30535:SF2 2 288 3.8E-69 T 22-04-2016 TRD_RS06400 7654cc1c278d9cc346e92ebe3108f0b7 310 Gene3D G3DSA:3.40.50.1980 2 150 1.8E-23 T 22-04-2016 TRD_RS06400 7654cc1c278d9cc346e92ebe3108f0b7 310 Gene3D G3DSA:3.40.50.1980 153 289 3.9E-23 T 22-04-2016 TRD_RS13705 fbfd74323c21427ad13eab648e8f1c2a 64 Pfam PF02609 Exonuclease VII small subunit 16 64 1.7E-18 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 TRD_RS13705 fbfd74323c21427ad13eab648e8f1c2a 64 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 16 54 2.0E-7 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 TRD_RS13705 fbfd74323c21427ad13eab648e8f1c2a 64 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 16 64 4.2E-18 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 TRD_RS13705 fbfd74323c21427ad13eab648e8f1c2a 64 Gene3D G3DSA:1.10.287.1040 16 64 7.1E-18 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 TRD_RS13705 fbfd74323c21427ad13eab648e8f1c2a 64 PANTHER PTHR34137 3 64 1.6E-15 T 22-04-2016 TRD_RS13705 fbfd74323c21427ad13eab648e8f1c2a 64 SUPERFAMILY SSF116842 16 63 6.15E-15 T 22-04-2016 TRD_RS12540 720220aba8b068a707482050b83a7002 200 Gene3D G3DSA:3.20.20.140 3 200 1.4E-71 T 22-04-2016 TRD_RS12540 720220aba8b068a707482050b83a7002 200 Pfam PF01026 TatD related DNase 3 200 1.3E-61 T 22-04-2016 IPR001130 TatD family GO:0016788 TRD_RS12540 720220aba8b068a707482050b83a7002 200 PANTHER PTHR10060:SF20 4 200 5.2E-78 T 22-04-2016 TRD_RS12540 720220aba8b068a707482050b83a7002 200 PANTHER PTHR10060 4 200 5.2E-78 T 22-04-2016 IPR001130 TatD family GO:0016788 TRD_RS12540 720220aba8b068a707482050b83a7002 200 SUPERFAMILY SSF51556 2 200 5.84E-67 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS12540 720220aba8b068a707482050b83a7002 200 PIRSF PIRSF005902 2 200 4.4E-60 T 22-04-2016 IPR001130 TatD family GO:0016788 TRD_RS04410 39b823ad60a28246c30b286ff91c29bf 37 Pfam PF00444 Ribosomal protein L36 1 37 1.4E-17 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04410 39b823ad60a28246c30b286ff91c29bf 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.124 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04410 39b823ad60a28246c30b286ff91c29bf 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04410 39b823ad60a28246c30b286ff91c29bf 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 1.3E-21 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04410 39b823ad60a28246c30b286ff91c29bf 37 SUPERFAMILY SSF57840 1 37 3.79E-16 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04410 39b823ad60a28246c30b286ff91c29bf 37 PANTHER PTHR18804 1 37 2.6E-16 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS08435 18494e741635c4787beca3311206185c 345 Gene3D G3DSA:3.40.50.970 16 344 1.4E-114 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08435 18494e741635c4787beca3311206185c 345 SUPERFAMILY SSF52518 12 343 7.81E-89 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08435 18494e741635c4787beca3311206185c 345 PANTHER PTHR11516:SF25 20 344 2.4E-128 T 22-04-2016 TRD_RS08435 18494e741635c4787beca3311206185c 345 PANTHER PTHR11516 20 344 2.4E-128 T 22-04-2016 TRD_RS08435 18494e741635c4787beca3311206185c 345 Pfam PF00676 Dehydrogenase E1 component 58 336 5.9E-74 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 TRD_RS02770 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 Pfam PF02449 Beta-galactosidase 83 142 9.5E-6 T 22-04-2016 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 TRD_RS02770 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 PANTHER PTHR12631:SF4 64 399 3.6E-65 T 22-04-2016 TRD_RS02770 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 Gene3D G3DSA:3.20.20.80 78 396 2.5E-57 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS02770 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 SUPERFAMILY SSF51445 64 396 9.72E-60 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS02770 cd3183bb6fcf1e4b3ff3ceeaacaf0329 400 PANTHER PTHR12631 64 399 3.6E-65 T 22-04-2016 TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 PANTHER PTHR11680 1 418 5.3E-256 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 4 412 53.099 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 PIRSF PIRSF000412 1 417 9.1E-170 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 Pfam PF00464 Serine hydroxymethyltransferase 7 381 9.3E-169 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 SUPERFAMILY SSF53383 3 413 6.6E-179 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 Gene3D G3DSA:3.90.1150.10 280 413 1.7E-55 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS03450 9df12faa720adab8f717ca0a4bdccded 426 Gene3D G3DSA:3.40.640.10 34 279 2.8E-105 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 PANTHER PTHR13832 8 279 5.0E-63 T 22-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 Gene3D G3DSA:3.60.40.10 16 259 1.1E-73 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 PANTHER PTHR13832:SF278 8 279 5.0E-63 T 22-04-2016 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 SMART SM00331 32 259 3.2E-31 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 SUPERFAMILY SSF81606 18 260 2.35E-67 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 SMART SM00332 13 257 9.8E-37 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS02890 99ee83360fd9af80556754038360a4d6 305 Pfam PF13672 Protein phosphatase 2C 44 227 2.6E-17 T 22-04-2016 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 186 1.1E-28 T 22-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Gene3D G3DSA:3.40.47.10 163 326 2.1E-54 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 SUPERFAMILY SSF53901 6 326 1.14E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 326 1.8E-122 T 22-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 PANTHER PTHR34069 1 333 2.6E-132 T 22-04-2016 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 PANTHER PTHR34069:SF2 1 333 2.6E-132 T 22-04-2016 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 238 326 4.9E-35 T 22-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 326 69.32 T 22-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 TRD_RS07590 1fabdf41c0b8fcff563e4acdde8d4d4a 335 Gene3D G3DSA:3.40.47.10 3 162 2.8E-66 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS04635 13b383a4f21864a42a7b6f2049284a3e 711 Pfam PF04234 CopC domain 35 131 7.2E-19 T 22-04-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 TRD_RS04635 13b383a4f21864a42a7b6f2049284a3e 711 SUPERFAMILY SSF81296 34 131 1.12E-17 T 22-04-2016 IPR014756 Immunoglobulin E-set TRD_RS04635 13b383a4f21864a42a7b6f2049284a3e 711 PANTHER PTHR34820 10 565 1.4E-29 T 22-04-2016 TRD_RS04635 13b383a4f21864a42a7b6f2049284a3e 711 Gene3D G3DSA:2.60.40.1220 34 131 2.3E-20 T 22-04-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like TRD_RS13495 bc0fc3d93acee6f514c19606d78a5b21 116 SMART SM00530 12 67 1.9E-12 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 TRD_RS13495 bc0fc3d93acee6f514c19606d78a5b21 116 Gene3D G3DSA:1.10.260.40 7 71 4.2E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS13495 bc0fc3d93acee6f514c19606d78a5b21 116 Pfam PF13560 Helix-turn-helix domain 9 62 1.6E-12 T 22-04-2016 TRD_RS13495 bc0fc3d93acee6f514c19606d78a5b21 116 SUPERFAMILY SSF47413 6 70 1.58E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS07830 8111907279689887478bbd37e33b3917 320 PANTHER PTHR30465 4 318 6.7E-96 T 22-04-2016 TRD_RS07830 8111907279689887478bbd37e33b3917 320 SUPERFAMILY SSF161098 97 302 1.87E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07830 8111907279689887478bbd37e33b3917 320 PANTHER PTHR30465:SF0 4 318 6.7E-96 T 22-04-2016 TRD_RS07830 8111907279689887478bbd37e33b3917 320 Gene3D G3DSA:1.10.3720.10 95 314 3.0E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07830 8111907279689887478bbd37e33b3917 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 317 1.4E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04355 2d435db8b3a219c036b857dc3a7859fa 221 PANTHER PTHR12553 6 215 1.6E-25 T 22-04-2016 TRD_RS04355 2d435db8b3a219c036b857dc3a7859fa 221 Pfam PF12706 Beta-lactamase superfamily domain 6 182 1.4E-20 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS04355 2d435db8b3a219c036b857dc3a7859fa 221 Gene3D G3DSA:3.60.15.10 4 213 1.2E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS04355 2d435db8b3a219c036b857dc3a7859fa 221 SUPERFAMILY SSF56281 6 214 1.31E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 157 2.3E-56 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 SUPERFAMILY SSF52467 145 342 4.37E-61 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 PANTHER PTHR18968:SF116 1 543 2.7E-287 T 22-04-2016 TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 Gene3D G3DSA:3.40.50.970 346 545 1.3E-68 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 SUPERFAMILY SSF52518 2 170 2.47E-60 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 Gene3D G3DSA:3.40.50.970 2 160 1.3E-70 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 544 5.7E-229 T 22-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 Gene3D G3DSA:3.40.50.1220 177 339 2.5E-66 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 PANTHER PTHR18968 1 543 2.7E-287 T 22-04-2016 TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 SUPERFAMILY SSF52518 352 546 1.47E-63 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 183 318 1.5E-48 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 TRD_RS02870 eda16004ce22106ee1d46bdacb6809f2 552 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 520 2.7E-44 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 TRD_RS03720 195feec979adb918612f64cbb3ba20f6 94 SUPERFAMILY SSF54975 4 93 2.62E-28 T 22-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 TRD_RS03720 195feec979adb918612f64cbb3ba20f6 94 ProSitePatterns PS00150 Acylphosphatase signature 1. 11 21 - T 22-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 TRD_RS03720 195feec979adb918612f64cbb3ba20f6 94 Pfam PF00708 Acylphosphatase 6 93 4.1E-26 T 22-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 TRD_RS03720 195feec979adb918612f64cbb3ba20f6 94 Gene3D G3DSA:3.30.70.100 6 93 3.1E-29 T 22-04-2016 TRD_RS03720 195feec979adb918612f64cbb3ba20f6 94 PANTHER PTHR10029 10 94 9.5E-24 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 126 277 2.0E-12 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 PANTHER PTHR41710:SF1 368 538 3.5E-69 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 PANTHER PTHR41710:SF1 598 742 3.5E-69 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 TIGRFAM TIGR03663 TIGR03663: TIGR03663 family protein 79 532 3.6E-63 T 22-04-2016 IPR019962 Conserved hypothetical protein CHP03663 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 PANTHER PTHR41710 70 306 3.5E-69 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 PANTHER PTHR41710:SF1 70 306 3.5E-69 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 PANTHER PTHR41710 368 538 3.5E-69 T 22-04-2016 TRD_RS05945 83dcccb8725d3e147ef4b02bbc5302cd 848 PANTHER PTHR41710 598 742 3.5E-69 T 22-04-2016 TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 PANTHER PTHR24220:SF86 14 233 6.3E-109 T 22-04-2016 TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 Pfam PF00005 ABC transporter 32 180 2.0E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 PANTHER PTHR24220 14 233 6.3E-109 T 22-04-2016 TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 SMART SM00382 41 229 4.9E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 SUPERFAMILY SSF52540 12 234 4.76E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS01280 3143f10f91a80051e22ddff8ae7581c0 245 Gene3D G3DSA:3.40.50.300 11 234 9.5E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02060 c7189f233da2f4fbd47eb53239bdddaf 363 Gene3D G3DSA:3.20.20.210 3 363 1.7E-96 T 22-04-2016 TRD_RS02060 c7189f233da2f4fbd47eb53239bdddaf 363 PANTHER PTHR30519 3 363 1.4E-83 T 22-04-2016 TRD_RS02060 c7189f233da2f4fbd47eb53239bdddaf 363 PANTHER PTHR30519:SF3 3 363 1.4E-83 T 22-04-2016 TRD_RS02060 c7189f233da2f4fbd47eb53239bdddaf 363 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 8 335 1.6E-21 T 22-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 TRD_RS02060 c7189f233da2f4fbd47eb53239bdddaf 363 SUPERFAMILY SSF51726 6 362 7.59E-64 T 22-04-2016 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 SUPERFAMILY SSF56719 31 488 3.01E-182 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 11 803 0.0 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 PANTHER PTHR10169:SF48 3 780 0.0 T 22-04-2016 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Gene3D G3DSA:3.90.199.10 35 217 2.3E-86 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Gene3D G3DSA:1.10.268.10 364 462 2.5E-33 T 22-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 PANTHER PTHR10169 3 780 0.0 T 22-04-2016 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Gene3D G3DSA:3.30.1360.40 237 333 1.7E-41 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Gene3D G3DSA:2.120.10.90 497 804 2.3E-119 T 22-04-2016 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 SMART SM00434 12 466 3.9E-288 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 505 551 8.3E-11 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 710 755 3.5E-13 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 659 705 3.1E-15 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 760 803 6.8E-12 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 555 604 4.3E-11 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 613 656 1.3E-8 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 471 2.0E-161 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 804 29.243 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 TRD_RS02985 24e29d6277f6b895158489c44c77a3f9 804 SUPERFAMILY SSF101904 500 804 9.16E-102 T 22-04-2016 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 Gene3D G3DSA:2.170.120.20 101 191 1.3E-17 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 PANTHER PTHR33284 8 207 1.4E-36 T 22-04-2016 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 93 5.0E-6 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 9 180 6.2E-25 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 184 21.648 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 SUPERFAMILY SSF50715 6 190 4.71E-36 T 22-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 Gene3D G3DSA:2.40.240.10 7 95 2.5E-20 T 22-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 Pfam PF01386 Ribosomal L25p family 8 93 1.3E-16 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 TRD_RS05380 ce57769b8c9fc5525134cc92c27a1554 223 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 101 183 4.1E-16 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain TRD_RS00505 797036458088055b0531844648738e11 275 SUPERFAMILY SSF51366 18 264 4.05E-77 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS00505 797036458088055b0531844648738e11 275 Gene3D G3DSA:3.20.20.70 6 264 9.8E-95 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00505 797036458088055b0531844648738e11 275 Pfam PF00218 Indole-3-glycerol phosphate synthase 8 264 6.5E-84 T 22-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 TRD_RS00505 797036458088055b0531844648738e11 275 PANTHER PTHR22854:SF2 3 264 7.2E-100 T 22-04-2016 TRD_RS00505 797036458088055b0531844648738e11 275 Hamap MF_00134_A Indole-3-glycerol phosphate synthase [trpC]. 37 262 29.903 T 22-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 TRD_RS00505 797036458088055b0531844648738e11 275 PANTHER PTHR22854 3 264 7.2E-100 T 22-04-2016 TRD_RS00505 797036458088055b0531844648738e11 275 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 6 266 34.207 T 22-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 PANTHER PTHR19375:SF117 2 319 1.5E-148 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 Pfam PF06723 MreB/Mbl protein 3 326 1.2E-137 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 Gene3D G3DSA:3.30.420.40 255 309 1.2E-32 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 Gene3D G3DSA:3.30.420.40 152 178 1.2E-32 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 Gene3D G3DSA:3.30.420.40 3 151 6.9E-42 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 Gene3D G3DSA:3.90.640.10 179 251 3.5E-29 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 2 327 1.6E-140 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 124 143 1.6E-36 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 292 318 1.6E-36 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 179 199 1.6E-36 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 40 58 1.6E-36 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 SUPERFAMILY SSF53067 142 324 4.05E-49 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 PANTHER PTHR19375 2 319 1.5E-148 T 22-04-2016 TRD_RS07320 b1783260ae15f1fe1fad40a2cbf75cb4 334 SUPERFAMILY SSF53067 4 138 1.55E-38 T 22-04-2016 TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 Pfam PF00535 Glycosyl transferase family 2 7 191 3.2E-22 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 PANTHER PTHR22916 168 305 3.2E-60 T 22-04-2016 TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 PANTHER PTHR22916 5 145 3.2E-60 T 22-04-2016 TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 PANTHER PTHR22916:SF9 168 305 3.2E-60 T 22-04-2016 TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 PANTHER PTHR22916:SF9 5 145 3.2E-60 T 22-04-2016 TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 SUPERFAMILY SSF53448 5 262 5.44E-54 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS07440 c4f8136e285fbe15f868aa933bc52387 312 Gene3D G3DSA:3.90.550.10 6 256 5.0E-49 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS04735 456e95b6f6f6c59016488bca3bbea3f8 306 Gene3D G3DSA:3.90.245.10 1 299 1.1E-85 T 22-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain TRD_RS04735 456e95b6f6f6c59016488bca3bbea3f8 306 SUPERFAMILY SSF53590 1 299 1.44E-79 T 22-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain TRD_RS04735 456e95b6f6f6c59016488bca3bbea3f8 306 PANTHER PTHR12304:SF4 2 299 1.6E-77 T 22-04-2016 TRD_RS04735 456e95b6f6f6c59016488bca3bbea3f8 306 PANTHER PTHR12304 2 299 1.6E-77 T 22-04-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase TRD_RS04735 456e95b6f6f6c59016488bca3bbea3f8 306 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 290 2.0E-62 T 22-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain TRD_RS02190 b4692271a1c6b301386e5cc0644b2102 475 Pfam PF08239 Bacterial SH3 domain 46 102 5.1E-7 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS02190 b4692271a1c6b301386e5cc0644b2102 475 Gene3D G3DSA:2.30.30.40 64 106 7.9E-4 T 22-04-2016 TRD_RS06395 184843cb6be69ae9033eb3700a3fa6ff 104 SMART SM00418 16 96 0.0088 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS06395 184843cb6be69ae9033eb3700a3fa6ff 104 Pfam PF01638 HxlR-like helix-turn-helix 20 104 6.9E-26 T 22-04-2016 IPR002577 Helix-turn-helix, HxlR type TRD_RS06395 184843cb6be69ae9033eb3700a3fa6ff 104 Gene3D G3DSA:1.10.10.10 1 104 6.2E-37 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06395 184843cb6be69ae9033eb3700a3fa6ff 104 SUPERFAMILY SSF46785 8 104 3.48E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06395 184843cb6be69ae9033eb3700a3fa6ff 104 PANTHER PTHR33204 1 104 1.4E-33 T 22-04-2016 TRD_RS09245 a38ead88b590d11cb076df3e80ae1769 108 Gene3D G3DSA:3.30.460.10 6 93 3.5E-15 T 22-04-2016 TRD_RS09245 a38ead88b590d11cb076df3e80ae1769 108 SUPERFAMILY SSF81301 3 101 1.06E-15 T 22-04-2016 TRD_RS09245 a38ead88b590d11cb076df3e80ae1769 108 Pfam PF01909 Nucleotidyltransferase domain 15 85 1.0E-7 T 22-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 TRD_RS09240 4390632f269a603033cee8c3fbf92ff5 131 Pfam PF05168 HEPN domain 7 126 4.8E-34 T 22-04-2016 IPR007842 HEPN domain TRD_RS09240 4390632f269a603033cee8c3fbf92ff5 131 Gene3D G3DSA:1.20.120.330 4 128 4.7E-43 T 22-04-2016 TRD_RS09240 4390632f269a603033cee8c3fbf92ff5 131 PANTHER PTHR15600 3 131 4.3E-39 T 22-04-2016 TRD_RS09240 4390632f269a603033cee8c3fbf92ff5 131 SMART SM00748 9 120 6.2E-33 T 22-04-2016 IPR007842 HEPN domain TRD_RS09240 4390632f269a603033cee8c3fbf92ff5 131 SUPERFAMILY SSF81593 3 126 4.71E-40 T 22-04-2016 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 SUPERFAMILY SSF56003 165 800 6.54E-208 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.90.1170.50 37 161 5.8E-38 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 SUPERFAMILY SSF54665 38 195 5.5E-42 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 326 401 5.2E-39 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 162 216 5.2E-39 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 PANTHER PTHR11908:SF76 621 806 2.8E-296 T 22-04-2016 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 SMART SM01008 59 173 1.8E-38 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 PANTHER PTHR11908:SF76 26 603 2.8E-296 T 22-04-2016 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 217 323 3.9E-36 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 60 173 1.8E-23 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 PANTHER PTHR11908 621 806 2.8E-296 T 22-04-2016 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 PANTHER PTHR11908 26 603 2.8E-296 T 22-04-2016 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 189 737 3.7E-177 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 652 800 3.2E-69 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 404 495 3.2E-69 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS05670 2fd56ba022d6041aac990cff49594cda 809 Gene3D G3DSA:3.30.365.10 496 649 6.3E-49 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 217 5.4E-25 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 PANTHER PTHR10909:SF305 1 371 4.8E-159 T 22-04-2016 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 Gene3D G3DSA:2.40.110.10 122 222 2.4E-40 T 22-04-2016 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 PANTHER PTHR10909 1 371 4.8E-159 T 22-04-2016 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 Gene3D G3DSA:1.20.140.10 223 379 1.6E-60 T 22-04-2016 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 2.7E-38 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 SUPERFAMILY SSF56645 1 242 2.36E-88 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 1.1E-43 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 SUPERFAMILY SSF47203 227 384 1.18E-51 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 TRD_RS00185 58928177692ebd003c41d304b20c2f41 403 Gene3D G3DSA:1.10.540.10 1 119 2.8E-42 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 Gene3D G3DSA:3.40.50.1000 206 288 1.3E-44 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 Gene3D G3DSA:3.40.50.1000 15 86 1.3E-44 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 Pfam PF08282 haloacid dehalogenase-like hydrolase 207 284 2.5E-22 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 Pfam PF08282 haloacid dehalogenase-like hydrolase 17 113 3.5E-19 T 22-04-2016 IPR023214 HAD-like domain TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 261 273 5.9E-6 T 22-04-2016 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 123 133 5.9E-6 T 22-04-2016 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 238 257 5.9E-6 T 22-04-2016 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 16 257 2.8E-22 T 22-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 PANTHER PTHR10000 14 290 4.0E-58 T 22-04-2016 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 PANTHER PTHR10000:SF8 14 290 4.0E-58 T 22-04-2016 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 ProSitePatterns PS01229 Hypothetical cof family signature 2. 238 260 - T 22-04-2016 TRD_RS08955 0707f57ca896bd4d4311d62844060dd0 299 SUPERFAMILY SSF56784 14 289 7.24E-53 T 22-04-2016 IPR023214 HAD-like domain TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 40 222 1.2E-57 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 57 77 9.0E-42 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 151 177 9.0E-42 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 40 57 9.0E-42 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 116 136 9.0E-42 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 199 223 9.0E-42 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 95 115 9.0E-42 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 PANTHER PTHR30071 16 219 8.6E-61 T 22-04-2016 TRD_RS05680 6a077b016f882fdbdfe483a1a3eb8de5 239 Pfam PF01578 Cytochrome C assembly protein 17 179 1.4E-34 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 PRINTS PR00598 Bacterial regulatory protein MarR family signature 60 76 3.4E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 112 3.4E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 3.4E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 PRINTS PR00598 Bacterial regulatory protein MarR family signature 77 92 3.4E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 SUPERFAMILY SSF46785 15 149 7.26E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 Gene3D G3DSA:1.10.10.10 12 145 9.7E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 PANTHER PTHR33164:SF16 6 146 1.2E-14 T 22-04-2016 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 PANTHER PTHR33164 6 146 1.2E-14 T 22-04-2016 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 SMART SM00347 34 135 1.1E-13 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 ProSitePatterns PS01117 MarR-type HTH domain signature. 75 109 - T 22-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site TRD_RS07985 c4dc6a2ea1cc82d3dbaf47240991441f 214 Pfam PF12802 MarR family 39 99 4.6E-8 T 22-04-2016 TRD_RS02275 529be52f60c6055f965df55d317563db 114 Pfam PF01588 Putative tRNA binding domain 17 111 4.3E-15 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 TRD_RS02275 529be52f60c6055f965df55d317563db 114 PANTHER PTHR11586 7 110 1.4E-31 T 22-04-2016 TRD_RS02275 529be52f60c6055f965df55d317563db 114 Gene3D G3DSA:2.40.50.140 4 113 8.0E-33 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02275 529be52f60c6055f965df55d317563db 114 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 10 113 1.1E-42 T 22-04-2016 IPR008231 Probable chaperone CsaA TRD_RS02275 529be52f60c6055f965df55d317563db 114 SUPERFAMILY SSF50249 7 113 1.49E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 Pfam PF00107 Zinc-binding dehydrogenase 216 350 2.2E-21 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 Gene3D G3DSA:3.40.50.720 207 343 2.9E-27 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 SUPERFAMILY SSF51735 181 346 4.96E-27 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 PANTHER PTHR11695:SF38 34 389 7.3E-78 T 22-04-2016 TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 SUPERFAMILY SSF50129 24 214 6.24E-37 T 22-04-2016 IPR011032 GroES-like TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 Gene3D G3DSA:3.90.180.10 25 206 2.1E-37 T 22-04-2016 IPR011032 GroES-like TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 SMART SM00829 32 405 0.0019 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 86 100 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 PANTHER PTHR11695 34 389 7.3E-78 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 TRD_RS09075 5de86ae07a4c8a292c1f75929bd2f8a8 413 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 47 175 2.4E-22 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 TIGRFAM TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family 6 403 3.5E-164 T 22-04-2016 IPR011875 Glycogen synthase, corynebacterial KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00934 TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 Pfam PF00534 Glycosyl transferases group 1 207 381 2.0E-34 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 PANTHER PTHR12526:SF355 1 403 1.6E-177 T 22-04-2016 TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 SUPERFAMILY SSF53756 8 402 6.28E-93 T 22-04-2016 TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 Pfam PF13439 Glycosyltransferase Family 4 19 189 3.6E-32 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 PANTHER PTHR12526 1 403 1.6E-177 T 22-04-2016 TRD_RS08300 e56e88bf84a5411a34d00b957e5c7628 403 Gene3D G3DSA:3.40.50.2000 171 381 2.6E-50 T 22-04-2016 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 Gene3D G3DSA:2.60.15.10 4 91 5.7E-28 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-17 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 SUPERFAMILY SSF46604 88 134 2.54E-6 T 22-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 131 8.7E-10 T 22-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 Gene3D G3DSA:1.20.5.440 92 132 5.5E-9 T 22-04-2016 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 PANTHER PTHR13822 1 144 3.4E-36 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 22.153 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 2.9E-26 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 131 2.1E-33 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS05730 b7df8157113512bfc9959088507ba8c7 151 SUPERFAMILY SSF51344 5 86 1.44E-21 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 SUPERFAMILY SSF53187 15 91 1.08E-59 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 SUPERFAMILY SSF53187 178 364 1.08E-59 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 PIRSF PIRSF001123 12 369 2.1E-99 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 Gene3D G3DSA:3.40.630.10 11 82 3.7E-72 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 Gene3D G3DSA:3.40.630.10 175 365 3.7E-72 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 PANTHER PTHR32481:SF0 10 371 2.2E-115 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 Gene3D G3DSA:2.40.30.40 83 168 1.4E-25 T 22-04-2016 IPR023367 Peptidase M42, domain 2 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 PANTHER PTHR32481 10 371 2.2E-115 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 SUPERFAMILY SSF101821 81 186 8.24E-23 T 22-04-2016 TRD_RS04910 c49735c176a82e240befb4198826a2fc 373 Pfam PF05343 M42 glutamyl aminopeptidase 56 352 1.5E-85 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS01760 cae5b166f48fabf84f500bcfab5eff27 471 Pfam PF01458 Uncharacterized protein family (UPF0051) 217 442 4.9E-76 T 22-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 TRD_RS01760 cae5b166f48fabf84f500bcfab5eff27 471 PANTHER PTHR30508:SF1 14 471 5.4E-248 T 22-04-2016 TRD_RS01760 cae5b166f48fabf84f500bcfab5eff27 471 PANTHER PTHR30508 14 471 5.4E-248 T 22-04-2016 TRD_RS01760 cae5b166f48fabf84f500bcfab5eff27 471 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 17 462 5.7E-224 T 22-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 TRD_RS01760 cae5b166f48fabf84f500bcfab5eff27 471 SUPERFAMILY SSF101960 38 468 1.44E-143 T 22-04-2016 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 PANTHER PTHR30349 55 356 8.5E-47 T 22-04-2016 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 56 112 5.5E-12 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 SUPERFAMILY SSF56349 55 344 1.0E-64 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 Pfam PF00589 Phage integrase family 161 341 8.2E-21 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 Gene3D G3DSA:1.10.443.10 161 347 2.7E-39 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 PANTHER PTHR30349:SF20 55 356 8.5E-47 T 22-04-2016 TRD_RS02555 a9f875f18e54932132416258ac3bca25 359 Gene3D G3DSA:1.10.150.130 56 148 2.0E-13 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 PANTHER PTHR10884:SF6 32 180 4.6E-60 T 22-04-2016 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 56 178 8.7E-43 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 SUPERFAMILY SSF143243 33 187 1.44E-50 T 22-04-2016 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 PANTHER PTHR10884 32 180 4.6E-60 T 22-04-2016 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 30 187 28.502 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 139 160 - T 22-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 57 180 7.2E-46 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 TRD_RS08320 6ae5e4c8890c178168e9845e088e8792 204 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 112 175 2.0E-17 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 TRD_RS03745 8a3e228af886a2366a2c8b3ce9a45e03 179 Pfam PF12728 Helix-turn-helix domain 125 173 4.0E-8 T 22-04-2016 TRD_RS03745 8a3e228af886a2366a2c8b3ce9a45e03 179 SUPERFAMILY SSF46955 124 175 9.34E-7 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS03745 8a3e228af886a2366a2c8b3ce9a45e03 179 Gene3D G3DSA:1.10.10.60 127 146 4.3E-4 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 TRD_RS03745 8a3e228af886a2366a2c8b3ce9a45e03 179 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 126 167 4.1E-9 T 22-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 PANTHER PTHR22573 7 446 2.9E-161 T 22-04-2016 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF55957 367 447 1.74E-20 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 444 2.7E-9 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 TIGRFAM TIGR03990 Arch_GlmM: phosphoglucosamine mutase 7 445 6.1E-139 T 22-04-2016 IPR024086 Phosphoglucosamine mutase, archaeal type GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 3.3E-27 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 PANTHER PTHR22573:SF28 7 446 2.9E-161 T 22-04-2016 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.30.310.50 368 448 1.6E-22 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 122 3.0E-38 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.2E-24 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.2E-24 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 217 1.2E-24 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.2E-24 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.40.120.10 250 367 1.8E-40 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 253 6.7E-25 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF53738 153 256 8.63E-30 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.40.120.10 8 120 2.2E-36 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF53738 7 177 1.22E-38 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 SUPERFAMILY SSF53738 258 362 1.22E-32 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS05490 a2458ec2473714c8695eea8ae2e7724c 451 Gene3D G3DSA:3.40.120.10 173 248 4.6E-32 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 TRD_RS02265 df7255a314141aa6af34d53b9bc9ded7 278 PANTHER PTHR30622:SF4 1 276 2.6E-105 T 22-04-2016 TRD_RS02265 df7255a314141aa6af34d53b9bc9ded7 278 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 274 17.816 T 22-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 TRD_RS02265 df7255a314141aa6af34d53b9bc9ded7 278 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 6 267 2.2E-71 T 22-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 TRD_RS02265 df7255a314141aa6af34d53b9bc9ded7 278 Pfam PF02673 Bacitracin resistance protein BacA 6 269 4.3E-71 T 22-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 TRD_RS02265 df7255a314141aa6af34d53b9bc9ded7 278 PANTHER PTHR30622 1 276 2.6E-105 T 22-04-2016 TRD_RS03800 df2840804c0c602251e37519f1808768 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 5.0E-5 T 22-04-2016 TRD_RS03800 df2840804c0c602251e37519f1808768 117 Pfam PF00453 Ribosomal protein L20 3 109 1.2E-47 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 PANTHER PTHR10986 2 117 3.4E-60 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.455 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 7.3E-47 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.0E-38 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.0E-38 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.0E-38 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 TRD_RS03800 df2840804c0c602251e37519f1808768 117 Gene3D G3DSA:1.10.1900.20 55 117 3.8E-30 T 22-04-2016 TRD_RS03800 df2840804c0c602251e37519f1808768 117 SUPERFAMILY SSF74731 2 116 2.88E-47 T 22-04-2016 TRD_RS03800 df2840804c0c602251e37519f1808768 117 PANTHER PTHR10986:SF12 2 117 3.4E-60 T 22-04-2016 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 SUPERFAMILY SSF48179 184 330 2.21E-70 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 329 2.2E-134 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 9.0E-67 T 22-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 SUPERFAMILY SSF51735 3 183 4.01E-72 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 2 329 44.758 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 178 8.5E-74 T 22-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 PANTHER PTHR21371 1 334 1.0E-191 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02860 ee8fbe2462e3aab7ce173dd3eda52be4 335 Gene3D G3DSA:1.10.1040.10 30 326 2.0E-112 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 Gene3D G3DSA:2.30.40.10 271 361 2.2E-13 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 PANTHER PTHR11113:SF2 14 357 2.8E-180 T 22-04-2016 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 PANTHER PTHR11113:SF2 398 569 2.8E-180 T 22-04-2016 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 Pfam PF13382 Adenine deaminase C-terminal domain 404 566 3.8E-63 T 22-04-2016 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 PANTHER PTHR11113 14 357 2.8E-180 T 22-04-2016 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 PANTHER PTHR11113 398 569 2.8E-180 T 22-04-2016 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 Hamap MF_01518 Adenine deaminase [ade]. 28 569 35.101 T 22-04-2016 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 TIGRFAM TIGR01178 ade: adenine deaminase 28 566 1.0E-165 T 22-04-2016 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 Pfam PF01979 Amidohydrolase family 76 348 1.0E-20 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 Gene3D G3DSA:2.30.40.10 20 125 7.3E-19 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 SUPERFAMILY SSF51338 324 362 3.6E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 SUPERFAMILY SSF51338 22 78 3.6E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS05545 2150c2cb115b52acafbd55a38f4c72c0 569 SUPERFAMILY SSF51556 80 322 2.8E-26 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 Pfam PF01063 Amino-transferase class IV 53 268 7.6E-47 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 PANTHER PTHR11825 9 306 2.7E-126 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 Gene3D G3DSA:3.20.10.10 137 295 1.9E-52 T 22-04-2016 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 22-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 2.1E-89 T 22-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 PANTHER PTHR11825:SF52 9 306 2.7E-126 T 22-04-2016 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 SUPERFAMILY SSF56752 9 304 1.06E-82 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 TRD_RS07610 8d793a78d17834452de52935f9c05f47 316 Gene3D G3DSA:3.30.470.10 10 133 1.1E-29 T 22-04-2016 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 3.2E-20 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 3.2E-20 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 52 3.2E-20 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 3.2E-20 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 PANTHER PTHR33154 14 105 8.5E-24 T 22-04-2016 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 Pfam PF01022 Bacterial regulatory protein, arsR family 25 72 2.5E-16 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 Gene3D G3DSA:1.10.10.10 14 95 2.2E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 SMART SM00418 18 96 9.3E-28 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS00350 73ed3bc6e7bfc1b4edd96e80ab1e5e3e 105 SUPERFAMILY SSF46785 14 99 1.27E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 SUPERFAMILY SSF53649 7 78 4.84E-72 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 SUPERFAMILY SSF53649 311 517 4.84E-72 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 7 517 2.2E-206 T 22-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 Pfam PF01676 Metalloenzyme superfamily 7 506 1.1E-77 T 22-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 5 518 48.284 T 22-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 PIRSF PIRSF001492 2 519 2.1E-200 T 22-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 83 300 8.6E-83 T 22-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 SUPERFAMILY SSF64158 80 311 7.19E-86 T 22-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 PANTHER PTHR31637 7 521 1.7E-272 T 22-04-2016 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 PANTHER PTHR31637:SF0 7 521 1.7E-272 T 22-04-2016 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 Gene3D G3DSA:3.40.1450.10 80 311 2.3E-94 T 22-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 Gene3D G3DSA:3.40.720.10 316 517 2.9E-84 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 TRD_RS02935 615249dc562f3c516e8a82e590f9c545 524 Gene3D G3DSA:3.40.720.10 6 79 2.9E-84 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 TRD_RS06485 d23387eef71be7349f5e99fe040372a6 259 SUPERFAMILY SSF89550 1 197 1.88E-15 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS06485 d23387eef71be7349f5e99fe040372a6 259 PIRSF PIRSF016557 1 247 1.7E-60 T 22-04-2016 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 UniPathway: UPA00934 TRD_RS06485 d23387eef71be7349f5e99fe040372a6 259 Gene3D G3DSA:3.20.20.140 1 198 2.7E-8 T 22-04-2016 TRD_RS06485 d23387eef71be7349f5e99fe040372a6 259 PANTHER PTHR39181 1 255 4.9E-49 T 22-04-2016 TRD_RS06485 d23387eef71be7349f5e99fe040372a6 259 PANTHER PTHR39181:SF1 1 255 4.9E-49 T 22-04-2016 TRD_RS02810 aa1b9ae40c41550cb2fa0737f4fa29e4 344 PANTHER PTHR10192 119 317 2.0E-20 T 22-04-2016 TRD_RS02810 aa1b9ae40c41550cb2fa0737f4fa29e4 344 SUPERFAMILY SSF53218 186 304 8.9E-12 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS02810 aa1b9ae40c41550cb2fa0737f4fa29e4 344 PANTHER PTHR10192:SF13 119 317 2.0E-20 T 22-04-2016 TRD_RS02810 aa1b9ae40c41550cb2fa0737f4fa29e4 344 Gene3D G3DSA:3.40.980.10 153 302 3.2E-12 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS05325 f12a75b4469c4f490e3bac7b13d4cfe8 255 PANTHER PTHR11054 1 238 2.0E-82 T 22-04-2016 TRD_RS05325 f12a75b4469c4f490e3bac7b13d4cfe8 255 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 3 238 1.3E-61 T 22-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 TRD_RS05325 f12a75b4469c4f490e3bac7b13d4cfe8 255 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 4 228 9.8E-67 T 22-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 TRD_RS05325 f12a75b4469c4f490e3bac7b13d4cfe8 255 SUPERFAMILY SSF100950 2 238 1.44E-68 T 22-04-2016 TRD_RS05325 f12a75b4469c4f490e3bac7b13d4cfe8 255 Gene3D G3DSA:3.40.50.1360 3 238 7.2E-73 T 22-04-2016 TRD_RS12635 cc96878536eacbcc53cafa7e468680b4 257 PANTHER PTHR10566 1 244 1.3E-64 T 22-04-2016 TRD_RS12635 cc96878536eacbcc53cafa7e468680b4 257 SUPERFAMILY SSF56112 2 198 2.2E-10 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS12635 cc96878536eacbcc53cafa7e468680b4 257 PANTHER PTHR10566:SF10 1 244 1.3E-64 T 22-04-2016 TRD_RS12635 cc96878536eacbcc53cafa7e468680b4 257 Gene3D G3DSA:3.90.1200.10 30 85 1.6E-6 T 22-04-2016 TRD_RS02480 83406aa6e6661f19ef234b016dc5ffea 82 SUPERFAMILY SSF46955 9 61 5.95E-11 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS02480 83406aa6e6661f19ef234b016dc5ffea 82 Pfam PF12728 Helix-turn-helix domain 9 58 9.6E-14 T 22-04-2016 TRD_RS02480 83406aa6e6661f19ef234b016dc5ffea 82 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 9 57 6.8E-10 T 22-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 TRD_RS02480 83406aa6e6661f19ef234b016dc5ffea 82 Gene3D G3DSA:1.10.1660.10 8 60 1.6E-6 T 22-04-2016 TRD_RS00510 7cfe104c81e38bc30cdc310b806b9541 230 Gene3D G3DSA:3.20.20.70 4 213 8.1E-65 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00510 7cfe104c81e38bc30cdc310b806b9541 230 PANTHER PTHR22854 4 213 1.8E-60 T 22-04-2016 TRD_RS00510 7cfe104c81e38bc30cdc310b806b9541 230 PANTHER PTHR22854:SF6 4 213 1.8E-60 T 22-04-2016 TRD_RS00510 7cfe104c81e38bc30cdc310b806b9541 230 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 214 35.068 T 22-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 TRD_RS00510 7cfe104c81e38bc30cdc310b806b9541 230 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 209 1.4E-45 T 22-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 TRD_RS00510 7cfe104c81e38bc30cdc310b806b9541 230 SUPERFAMILY SSF51366 4 212 3.14E-51 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS09110 1f7f4d481f25698f4089233a87f502eb 279 Gene3D G3DSA:1.10.3720.10 67 267 3.3E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS09110 1f7f4d481f25698f4089233a87f502eb 279 PANTHER PTHR30465 7 277 1.2E-68 T 22-04-2016 TRD_RS09110 1f7f4d481f25698f4089233a87f502eb 279 PANTHER PTHR30465:SF26 7 277 1.2E-68 T 22-04-2016 TRD_RS09110 1f7f4d481f25698f4089233a87f502eb 279 SUPERFAMILY SSF161098 68 256 1.44E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS09110 1f7f4d481f25698f4089233a87f502eb 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 275 2.0E-20 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 SMART SM00967 32 107 9.3E-10 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 SUPERFAMILY SSF75217 95 263 7.19E-35 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 32 104 5.8E-8 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 SUPERFAMILY SSF55315 4 105 2.59E-23 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 PANTHER PTHR12029 4 265 3.8E-62 T 22-04-2016 TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 Pfam PF00588 SpoU rRNA Methylase family 118 254 1.0E-27 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 Gene3D G3DSA:3.30.1330.30 4 104 5.7E-26 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS03805 ef94b94a21cb45ae6398396d779e7c73 271 Gene3D G3DSA:3.40.1280.10 116 264 2.4E-43 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 PANTHER PTHR17224 43 236 1.7E-74 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 Pfam PF01195 Peptidyl-tRNA hydrolase 44 225 1.6E-52 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 SUPERFAMILY SSF53178 42 226 1.83E-62 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 44 226 1.9E-57 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 55 68 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 Gene3D G3DSA:3.40.50.1470 36 227 5.6E-68 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 TRD_RS03695 8a5d623af313fbeaf24e3014d9b0a1a5 239 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 42 219 32.998 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 4.7E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 4.7E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 4.7E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 4.7E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 4.7E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 Gene3D G3DSA:3.30.360.10 163 317 2.5E-78 T 22-04-2016 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PIRSF PIRSF000149 1 335 1.9E-138 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 Gene3D G3DSA:3.40.50.720 3 162 3.9E-75 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PANTHER PTHR10836 2 340 2.0E-217 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 SUPERFAMILY SSF55347 154 316 1.58E-73 T 22-04-2016 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 327 4.8E-139 T 22-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 22-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 SUPERFAMILY SSF51735 3 170 4.86E-63 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 SMART SM00846 3 154 7.5E-94 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 154 7.6E-59 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 PANTHER PTHR10836:SF50 2 340 2.0E-217 T 22-04-2016 TRD_RS03560 a9a68322be10cbea1d660110b30d7fde 340 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 315 1.2E-69 T 22-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 TRD_RS05830 24cc7694fbb70e7e8d442e19e9d5c486 151 Pfam PF00436 Single-strand binding protein family 5 107 6.7E-35 T 22-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 TRD_RS05830 24cc7694fbb70e7e8d442e19e9d5c486 151 Gene3D G3DSA:2.40.50.140 2 151 4.2E-42 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS05830 24cc7694fbb70e7e8d442e19e9d5c486 151 SUPERFAMILY SSF50249 3 151 4.11E-44 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS05830 24cc7694fbb70e7e8d442e19e9d5c486 151 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 112 1.9E-39 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 TRD_RS05830 24cc7694fbb70e7e8d442e19e9d5c486 151 PANTHER PTHR10302 1 116 1.0E-43 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 TRD_RS05830 24cc7694fbb70e7e8d442e19e9d5c486 151 Hamap MF_00984 Single-stranded DNA-binding protein. 5 113 31.792 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 SUPERFAMILY SSF55347 137 302 9.15E-46 T 22-04-2016 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 6.6E-21 T 22-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 Gene3D G3DSA:3.40.50.720 1 148 3.0E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 PANTHER PTHR21499 1 319 1.6E-114 T 22-04-2016 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 PIRSF PIRSF036497 1 323 1.8E-91 T 22-04-2016 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 22-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 Gene3D G3DSA:3.30.360.10 149 299 1.1E-49 T 22-04-2016 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 PANTHER PTHR21499:SF2 1 319 1.6E-114 T 22-04-2016 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 Pfam PF00742 Homoserine dehydrogenase 137 315 4.3E-58 T 22-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 TRD_RS01700 936958faad32a8db77dd082fd529e3e1 332 SUPERFAMILY SSF51735 1 158 3.19E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04065 8babe7e5d018808d6a9c112e1c57903f 491 Pfam PF07171 MlrC C-terminus 290 479 9.1E-33 T 22-04-2016 IPR010799 Microcystin LR degradation protein MlrC, C-terminal TRD_RS04065 8babe7e5d018808d6a9c112e1c57903f 491 Pfam PF07364 Metallopeptidase family M81 2 280 2.6E-55 T 22-04-2016 IPR015995 Microcystin LR degradation protein MlrC, N-terminal TRD_RS08605 323d056ce731472609cc2098dbef1e37 177 PANTHER PTHR10739:SF26 21 162 2.6E-38 T 22-04-2016 TRD_RS08605 323d056ce731472609cc2098dbef1e37 177 Pfam PF01467 Cytidylyltransferase-like 22 116 1.4E-13 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 TRD_RS08605 323d056ce731472609cc2098dbef1e37 177 PANTHER PTHR10739 21 162 2.6E-38 T 22-04-2016 TRD_RS08605 323d056ce731472609cc2098dbef1e37 177 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 20 85 2.4E-14 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 TRD_RS08605 323d056ce731472609cc2098dbef1e37 177 SUPERFAMILY SSF52374 18 158 1.33E-21 T 22-04-2016 TRD_RS08605 323d056ce731472609cc2098dbef1e37 177 Gene3D G3DSA:3.40.50.620 18 146 2.0E-32 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS13755 19da52428578bfe2218a4aa29cf27e28 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 191 6.8E-27 T 22-04-2016 IPR023214 HAD-like domain TRD_RS13755 19da52428578bfe2218a4aa29cf27e28 222 PANTHER PTHR18901 1 206 1.1E-48 T 22-04-2016 TRD_RS13755 19da52428578bfe2218a4aa29cf27e28 222 Gene3D G3DSA:3.40.50.1000 6 206 1.6E-35 T 22-04-2016 IPR023214 HAD-like domain TRD_RS13755 19da52428578bfe2218a4aa29cf27e28 222 SUPERFAMILY SSF56784 6 214 7.27E-46 T 22-04-2016 IPR023214 HAD-like domain TRD_RS13755 19da52428578bfe2218a4aa29cf27e28 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 130 189 6.4E-13 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS08110 57735e5fa5eff50472223076d458136d 337 Pfam PF00676 Dehydrogenase E1 component 26 322 1.2E-96 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 TRD_RS08110 57735e5fa5eff50472223076d458136d 337 PANTHER PTHR11516 5 333 3.2E-167 T 22-04-2016 TRD_RS08110 57735e5fa5eff50472223076d458136d 337 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 17 331 8.6E-137 T 22-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 TRD_RS08110 57735e5fa5eff50472223076d458136d 337 SUPERFAMILY SSF52518 16 333 1.63E-109 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08110 57735e5fa5eff50472223076d458136d 337 Gene3D G3DSA:3.40.50.970 13 333 4.4E-142 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 PANTHER PTHR10996 43 326 2.2E-121 T 22-04-2016 TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 Gene3D G3DSA:3.40.50.720 124 296 9.0E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 122 294 3.8E-61 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 SUPERFAMILY SSF51735 113 295 4.58E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 SUPERFAMILY SSF52283 39 145 1.19E-30 T 22-04-2016 TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 205 227 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 25 326 4.4E-33 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 TRD_RS08650 e008bc659fea56a723d7771277f89c9e 333 Gene3D G3DSA:3.40.50.720 26 123 3.8E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 Gene3D G3DSA:2.20.25.90 32 87 4.7E-22 T 22-04-2016 TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 PANTHER PTHR11615 37 178 1.3E-48 T 22-04-2016 TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 SMART SM00926 32 86 1.5E-19 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 37 85 1.6E-16 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 Gene3D G3DSA:3.40.50.740 95 178 1.1E-6 T 22-04-2016 TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 PANTHER PTHR11615:SF126 37 178 1.3E-48 T 22-04-2016 TRD_RS09220 0ab31406b03a31bcbf36b829529aee95 178 SUPERFAMILY SSF53706 28 178 3.53E-47 T 22-04-2016 TRD_RS07380 266e0b82d435e6a2ed3b6f72384a3741 394 Pfam PF02646 RmuC family 120 374 9.6E-19 T 22-04-2016 IPR003798 DNA recombination RmuC TRD_RS07380 266e0b82d435e6a2ed3b6f72384a3741 394 SUPERFAMILY SSF57997 38 161 2.06E-6 T 22-04-2016 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 1 404 1.7E-163 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 Gene3D G3DSA:3.40.47.10 3 255 4.7E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 250 364 4.4E-38 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 Gene3D G3DSA:3.40.47.10 259 408 3.3E-61 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 SMART SM00825 Beta-ketoacyl synthase 1 409 3.7E-18 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 PIRSF PIRSF000447 1 409 7.3E-159 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 SUPERFAMILY SSF53901 210 407 2.47E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 150 166 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 SUPERFAMILY SSF53901 1 247 2.28E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 242 1.3E-53 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal TRD_RS02440 533f2e6cdad6eaea9766d4c659d677ce 424 PANTHER PTHR11712 1 407 2.2E-182 T 22-04-2016 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF55326 10 186 9.27E-47 T 22-04-2016 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.90.650.10 208 347 1.8E-5 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 PANTHER PTHR10099:SF2 6 731 0.0 T 22-04-2016 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 13 719 8.5E-272 T 22-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 PANTHER PTHR10099 6 731 0.0 T 22-04-2016 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 733 295.933 T 22-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Pfam PF02769 AIR synthase related protein, C-terminal domain 197 344 1.2E-31 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Pfam PF02769 AIR synthase related protein, C-terminal domain 571 706 6.4E-16 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 PIRSF PIRSF001587 3 731 6.7E-287 T 22-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF56042 195 421 1.09E-54 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF55326 391 561 2.88E-55 T 22-04-2016 TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Pfam PF00586 AIR synthase related protein, N-terminal domain 83 184 8.6E-23 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Pfam PF00586 AIR synthase related protein, N-terminal domain 437 553 2.0E-23 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 SUPERFAMILY SSF56042 569 730 1.92E-34 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.30.1330.10 45 191 1.5E-46 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS03420 caed10f54a6124c5e73358a654c76f96 733 Gene3D G3DSA:3.30.1330.10 409 558 3.1E-58 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS08330 fd9f5441bc8c86d5c90f72573c89c544 341 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 51 66 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 TRD_RS08330 fd9f5441bc8c86d5c90f72573c89c544 341 PANTHER PTHR11432:SF3 1 335 9.0E-149 T 22-04-2016 TRD_RS08330 fd9f5441bc8c86d5c90f72573c89c544 341 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 225 238 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 TRD_RS08330 fd9f5441bc8c86d5c90f72573c89c544 341 PANTHER PTHR11432 1 335 9.0E-149 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 TRD_RS08330 fd9f5441bc8c86d5c90f72573c89c544 341 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 5 337 25.053 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 TRD_RS08330 fd9f5441bc8c86d5c90f72573c89c544 341 Pfam PF00146 NADH dehydrogenase 15 330 1.3E-125 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 38 53 - T 22-04-2016 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 SUPERFAMILY SSF56317 4 261 3.53E-66 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 TIGRFAM TIGR00552 nadE: NAD+ synthetase 308 559 6.2E-57 T 22-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 SUPERFAMILY SSF52402 299 565 5.95E-75 T 22-04-2016 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 PANTHER PTHR23090 3 578 1.4E-173 T 22-04-2016 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 Gene3D G3DSA:3.60.110.10 5 249 4.5E-63 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 Pfam PF00795 Carbon-nitrogen hydrolase 7 247 7.4E-34 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 Pfam PF02540 NAD synthase 308 557 1.3E-74 T 22-04-2016 IPR022310 NAD/GMP synthase TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 PIRSF PIRSF006630 3 582 8.2E-201 T 22-04-2016 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|UniPathway: UPA00253 TRD_RS02110 6de38d2659252e1c7cc25a64de59c6e7 582 Gene3D G3DSA:3.40.50.620 302 563 1.6E-72 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 220 235 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 SUPERFAMILY SSF55931 94 433 5.79E-123 T 22-04-2016 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 Gene3D G3DSA:3.30.590.10 98 422 9.1E-124 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 SMART SM01230 94 345 4.2E-133 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 9 88 4.2E-29 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 SUPERFAMILY SSF54368 1 93 2.62E-30 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 ProSitePatterns PS00180 Glutamine synthetase signature 1. 44 62 - T 22-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 PANTHER PTHR20852:SF7 1 435 2.0E-178 T 22-04-2016 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 Pfam PF00120 Glutamine synthetase, catalytic domain 95 431 3.6E-128 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 432 6.3E-154 T 22-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 PANTHER PTHR20852 1 435 2.0E-178 T 22-04-2016 TRD_RS07285 287e59408a1aa7c2c0ebbfd23e5e2d5f 435 Gene3D G3DSA:3.10.20.70 1 97 1.7E-36 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 TRD_RS04650 72ffc6c76a3deddeeb7f2603df4fc472 483 SUPERFAMILY SSF52540 114 411 1.33E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04650 72ffc6c76a3deddeeb7f2603df4fc472 483 PANTHER PTHR30258:SF3 59 466 2.8E-142 T 22-04-2016 TRD_RS04650 72ffc6c76a3deddeeb7f2603df4fc472 483 PANTHER PTHR30258 59 466 2.8E-142 T 22-04-2016 TRD_RS04650 72ffc6c76a3deddeeb7f2603df4fc472 483 Gene3D G3DSA:3.40.50.300 225 441 3.3E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04650 72ffc6c76a3deddeeb7f2603df4fc472 483 Pfam PF00437 Type II/IV secretion system protein 129 404 1.0E-88 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 TRD_RS04650 72ffc6c76a3deddeeb7f2603df4fc472 483 Gene3D G3DSA:3.30.450.90 125 222 1.7E-39 T 22-04-2016 TRD_RS03455 a5aec06f7294a6f1feb3be6895631d91 369 PANTHER PTHR22926:SF3 4 369 5.9E-79 T 22-04-2016 TRD_RS03455 a5aec06f7294a6f1feb3be6895631d91 369 Pfam PF00953 Glycosyl transferase family 4 86 252 1.3E-38 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS03455 a5aec06f7294a6f1feb3be6895631d91 369 PANTHER PTHR22926 4 369 5.9E-79 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS13515 2047abed623b0e4d2805361dc9c2922f 159 Pfam PF09723 Zinc ribbon domain 1 42 5.8E-13 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain TRD_RS13515 2047abed623b0e4d2805361dc9c2922f 159 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 48 3.8E-14 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain TRD_RS13515 2047abed623b0e4d2805361dc9c2922f 159 SMART SM00834 1 44 6.8E-11 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain TRD_RS13515 2047abed623b0e4d2805361dc9c2922f 159 PANTHER PTHR34404 2 152 1.1E-12 T 22-04-2016 TRD_RS13515 2047abed623b0e4d2805361dc9c2922f 159 PANTHER PTHR34404:SF3 2 152 1.1E-12 T 22-04-2016 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 Hamap MF_00104 Ribonuclease 3 [rnc]. 21 243 29.73 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 PANTHER PTHR11207 22 250 1.7E-70 T 22-04-2016 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 Pfam PF14622 Ribonuclease-III-like 33 166 4.0E-32 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 Gene3D G3DSA:1.10.1520.10 23 167 5.9E-43 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 SMART SM00535 33 173 1.5E-49 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 SUPERFAMILY SSF54768 134 246 4.0E-25 T 22-04-2016 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 Gene3D G3DSA:3.30.160.20 179 246 2.3E-23 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 SMART SM00358 180 247 1.7E-22 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 SUPERFAMILY SSF69065 14 170 1.74E-44 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 Pfam PF00035 Double-stranded RNA binding motif 180 246 1.1E-15 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 ProSitePatterns PS00517 Ribonuclease III family signature. 61 69 - T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 TRD_RS06460 a192e9c331334b245d3fd8145ae3d0c7 252 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 23 246 3.0E-68 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 TRD_RS04790 45585af064da237f6f7abcc155a8db60 105 PANTHER PTHR33204 1 103 2.7E-26 T 22-04-2016 TRD_RS04790 45585af064da237f6f7abcc155a8db60 105 Gene3D G3DSA:1.10.10.10 9 104 2.6E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04790 45585af064da237f6f7abcc155a8db60 105 SUPERFAMILY SSF46785 7 104 7.29E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04790 45585af064da237f6f7abcc155a8db60 105 SMART SM00418 15 93 0.0095 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS04790 45585af064da237f6f7abcc155a8db60 105 Pfam PF01638 HxlR-like helix-turn-helix 20 104 1.1E-20 T 22-04-2016 IPR002577 Helix-turn-helix, HxlR type TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Pfam PF00448 SRP54-type protein, GTPase domain 100 295 3.2E-74 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Gene3D G3DSA:3.40.50.300 97 296 4.6E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 444 35.183 T 22-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 PANTHER PTHR11564:SF7 1 432 6.7E-257 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 SUPERFAMILY SSF47446 326 428 5.72E-39 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Gene3D G3DSA:1.10.260.30 326 429 5.5E-42 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 SMART SM00382 99 273 3.7E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 SUPERFAMILY SSF52540 42 352 7.7E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 SMART SM00962 100 295 2.2E-112 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 6.6E-23 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 SMART SM00963 1 86 1.3E-35 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Pfam PF02978 Signal peptide binding domain 326 425 2.9E-36 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 Gene3D G3DSA:1.20.120.140 2 89 1.5E-33 T 22-04-2016 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 426 1.5E-186 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 TRD_RS08485 050a6f64502560ec4dabc10ecc261427 488 PANTHER PTHR11564 1 432 6.7E-257 T 22-04-2016 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 17 521 1.5E-244 T 22-04-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 SUPERFAMILY SSF51645 4 521 4.45E-199 T 22-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 ProSitePatterns PS00510 Malate synthase signature. 259 274 - T 22-04-2016 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 PIRSF PIRSF001363 1 522 2.6E-253 T 22-04-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 PANTHER PTHR21631:SF1 3 521 3.1E-283 T 22-04-2016 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 Pfam PF01274 Malate synthase 5 521 2.4E-207 T 22-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 Gene3D G3DSA:1.20.1220.12 407 514 3.2E-24 T 22-04-2016 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 Gene3D G3DSA:3.20.20.360 65 404 7.2E-128 T 22-04-2016 TRD_RS02285 3236fe30c5d5c0622583187cbb99e3b4 522 PANTHER PTHR21631 3 521 3.1E-283 T 22-04-2016 TRD_RS00675 207fffe6ef7cfc75332ad79317b0989b 306 PANTHER PTHR22953 25 294 1.6E-27 T 22-04-2016 TRD_RS00675 207fffe6ef7cfc75332ad79317b0989b 306 SUPERFAMILY SSF56300 65 292 5.13E-42 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS00675 207fffe6ef7cfc75332ad79317b0989b 306 Gene3D G3DSA:3.60.21.10 42 292 6.8E-48 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS00675 207fffe6ef7cfc75332ad79317b0989b 306 PANTHER PTHR22953:SF0 25 294 1.6E-27 T 22-04-2016 TRD_RS00675 207fffe6ef7cfc75332ad79317b0989b 306 Pfam PF00149 Calcineurin-like phosphoesterase 61 225 6.5E-13 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 Pfam PF02080 TrkA-C domain 149 216 6.9E-16 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 Pfam PF02254 TrkA-N domain 3 118 2.1E-31 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 Gene3D G3DSA:3.30.70.1450 146 216 5.6E-11 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 Gene3D G3DSA:3.40.50.720 1 141 1.2E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 SUPERFAMILY SSF116726 140 216 1.18E-15 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 PANTHER PTHR16254 1 159 4.8E-34 T 22-04-2016 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.1E-13 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.1E-13 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.1E-13 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.1E-13 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.1E-13 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 TRD_RS06905 153ed65dbf96523508058044d4eb87e4 222 SUPERFAMILY SSF51735 1 140 4.41E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS05335 a9418bc7553d78eb5c742ec9850577f1 136 Pfam PF04238 Protein of unknown function (DUF420) 5 133 3.6E-37 T 22-04-2016 IPR007352 Protein of unknown function DUF420 TRD_RS05335 a9418bc7553d78eb5c742ec9850577f1 136 PANTHER PTHR37692 5 136 1.8E-34 T 22-04-2016 TRD_RS05335 a9418bc7553d78eb5c742ec9850577f1 136 Gene3D G3DSA:1.20.120.80 2 134 9.9E-7 T 22-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF06733 DEAD_2 419 509 2.5E-5 T 22-04-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF00270 DEAD/DEAH box helicase 279 333 9.5E-5 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SMART SM00479 4 165 7.0E-39 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF00929 Exonuclease 6 156 3.9E-25 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Gene3D G3DSA:3.30.420.10 5 164 1.2E-41 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 PANTHER PTHR11472:SF37 267 945 1.7E-147 T 22-04-2016 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Gene3D G3DSA:3.40.50.300 278 382 1.9E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Gene3D G3DSA:3.40.50.300 457 518 1.9E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF53098 3 176 1.48E-42 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 452 505 1.11E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 263 374 1.11E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 885 920 1.11E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SMART SM00491 797 926 6.0E-25 T 22-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 435 522 4.61E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 775 869 4.61E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SUPERFAMILY SSF52540 896 922 4.61E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 Pfam PF13307 Helicase C-terminal domain 779 939 9.5E-32 T 22-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 SMART SM00487 266 569 0.0023 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS01555 5233d3635daedc88a5bf10ad0e10db98 982 PANTHER PTHR11472 267 945 1.7E-147 T 22-04-2016 TRD_RS07305 05b103b35dafe72a38b613aefee0e02e 524 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 11 521 2.4E-230 T 22-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 TRD_RS07305 05b103b35dafe72a38b613aefee0e02e 524 SUPERFAMILY SSF51703 8 520 2.88E-211 T 22-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 TRD_RS07305 05b103b35dafe72a38b613aefee0e02e 524 Pfam PF01642 Methylmalonyl-CoA mutase 11 518 7.2E-227 T 22-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 TRD_RS07305 05b103b35dafe72a38b613aefee0e02e 524 Gene3D G3DSA:3.20.20.240 11 520 1.2E-228 T 22-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 TRD_RS07305 05b103b35dafe72a38b613aefee0e02e 524 PANTHER PTHR23408:SF7 11 522 1.3E-293 T 22-04-2016 TRD_RS07305 05b103b35dafe72a38b613aefee0e02e 524 PANTHER PTHR23408 11 522 1.3E-293 T 22-04-2016 TRD_RS00970 74ae92d914879260115c15f3505d5c27 114 PANTHER PTHR38456 6 113 8.5E-37 T 22-04-2016 TRD_RS00970 74ae92d914879260115c15f3505d5c27 114 Gene3D G3DSA:3.30.70.120 6 112 3.0E-12 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal TRD_RS00970 74ae92d914879260115c15f3505d5c27 114 SUPERFAMILY SSF54913 6 113 1.05E-10 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS00970 74ae92d914879260115c15f3505d5c27 114 Pfam PF06153 Cyclic-di-AMP receptor 6 112 1.9E-38 T 22-04-2016 IPR010375 Cyclic-di-AMP receptor TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 PANTHER PTHR11624 5 339 1.3E-174 T 22-04-2016 IPR033247 Transketolase family TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 Gene3D G3DSA:3.40.50.920 210 338 5.1E-45 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 PANTHER PTHR11624:SF77 5 339 1.3E-174 T 22-04-2016 TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 SUPERFAMILY SSF52518 6 219 6.96E-67 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 Pfam PF02780 Transketolase, C-terminal domain 209 331 8.5E-43 T 22-04-2016 IPR033248 Transketolase, C-terminal domain TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 SUPERFAMILY SSF52922 203 339 1.7E-42 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 Gene3D G3DSA:3.40.50.970 5 209 1.0E-81 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 Pfam PF02779 Transketolase, pyrimidine binding domain 8 195 1.3E-53 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS06975 bdc97219d2da5f160c4f95f21fb24925 339 SMART SM00861 8 195 1.0E-63 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 PANTHER PTHR11819:SF159 297 378 8.6E-206 T 22-04-2016 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 55 613 1.9E-223 T 22-04-2016 IPR019899 Sodium/solute symporter, VC2705 subfamily TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 PANTHER PTHR11819:SF159 406 613 8.6E-206 T 22-04-2016 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 PANTHER PTHR11819 406 613 8.6E-206 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 Pfam PF00474 Sodium:solute symporter family 435 550 5.7E-22 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 Pfam PF00474 Sodium:solute symporter family 80 365 8.9E-37 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 PANTHER PTHR11819:SF159 51 274 8.6E-206 T 22-04-2016 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 PANTHER PTHR11819 51 274 8.6E-206 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 80 550 1.3E-60 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 532 552 - T 22-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 TRD_RS05165 d1479311d76378db1dfee642b8463dba 615 PANTHER PTHR11819 297 378 8.6E-206 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 SUPERFAMILY SSF52540 150 389 2.95E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 SMART SM00448 1 114 4.8E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 153 346 4.7E-22 T 22-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 Gene3D G3DSA:3.40.50.300 151 388 1.4E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 Pfam PF00072 Response regulator receiver domain 3 115 3.3E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 PANTHER PTHR13696 88 399 7.7E-30 T 22-04-2016 TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 Gene3D G3DSA:3.40.50.2300 1 150 3.4E-29 T 22-04-2016 TRD_RS04655 41cca7b4842fc5992c46f28c740cacac 419 SUPERFAMILY SSF52172 1 119 8.97E-29 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS09070 153fb37381f9501ff4dfd79e42e76601 404 Gene3D G3DSA:3.40.225.10 245 392 3.6E-19 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS09070 153fb37381f9501ff4dfd79e42e76601 404 SMART SM01007 236 401 7.4E-4 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS09070 153fb37381f9501ff4dfd79e42e76601 404 SUPERFAMILY SSF53639 244 393 4.71E-20 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS09070 153fb37381f9501ff4dfd79e42e76601 404 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 245 334 1.4E-10 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal TRD_RS01040 695c5d170ababc879977f275ae59880c 218 SUPERFAMILY SSF52972 2 183 3.66E-55 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like TRD_RS01040 695c5d170ababc879977f275ae59880c 218 Gene3D G3DSA:3.90.950.10 2 186 4.8E-58 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like TRD_RS01040 695c5d170ababc879977f275ae59880c 218 Hamap MF_00528 Septum formation protein Maf [maf]. 2 188 27.098 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 TRD_RS01040 695c5d170ababc879977f275ae59880c 218 Pfam PF02545 Maf-like protein 3 183 2.7E-48 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 TRD_RS01040 695c5d170ababc879977f275ae59880c 218 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 2.5E-41 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 TRD_RS01040 695c5d170ababc879977f275ae59880c 218 PIRSF PIRSF006305 1 189 5.7E-46 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 TIGRFAM TIGR00608 radc: DNA repair protein RadC 19 230 1.4E-66 T 22-04-2016 IPR001405 RadC protein TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 Pfam PF04002 RadC-like JAB domain 111 230 8.3E-38 T 22-04-2016 IPR025657 RadC-like JAB domain TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 PANTHER PTHR30471:SF3 6 232 5.6E-92 T 22-04-2016 TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 SUPERFAMILY SSF102712 150 198 2.75E-5 T 22-04-2016 TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 SUPERFAMILY SSF47781 27 98 2.05E-7 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 Gene3D G3DSA:3.40.140.10 108 230 1.4E-41 T 22-04-2016 TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 PANTHER PTHR30471 6 232 5.6E-92 T 22-04-2016 TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 181 186 - T 22-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site TRD_RS08495 548bab91ae569ea3f2dca27bcd64328e 236 Gene3D G3DSA:1.10.150.20 55 94 9.0E-5 T 22-04-2016 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.50.50.60 140 218 2.0E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.50.50.60 5 81 2.0E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.50.50.60 316 374 2.0E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 Pfam PF01266 FAD dependent oxidoreductase 5 352 9.6E-61 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 SUPERFAMILY SSF51905 316 376 3.63E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 SUPERFAMILY SSF51905 5 219 3.63E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 PANTHER PTHR13847 5 371 1.0E-70 T 22-04-2016 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.30.9.10 86 139 2.6E-21 T 22-04-2016 TRD_RS00590 2f0b4abe8eae72f6501793b7c68c7b0d 387 Gene3D G3DSA:3.30.9.10 219 315 2.6E-21 T 22-04-2016 TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 166 186 1.9E-36 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 248 266 1.9E-36 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 28 45 1.9E-36 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 104 125 1.9E-36 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 206 223 1.9E-36 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 143 165 1.9E-36 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PANTHER PTHR10907 18 296 4.2E-72 T 22-04-2016 TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 PANTHER PTHR10907:SF47 18 296 4.2E-72 T 22-04-2016 TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 Gene3D G3DSA:2.120.10.30 18 291 3.8E-78 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 SUPERFAMILY SSF63829 14 288 1.32E-59 T 22-04-2016 TRD_RS09095 d4906e6ca6e771a66b4d1b55017ff6f5 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 27 266 5.0E-71 T 22-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 Gene3D G3DSA:3.30.450.20 465 584 1.2E-16 T 22-04-2016 TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 Pfam PF00990 Diguanylate cyclase, GGDEF domain 599 750 4.1E-40 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 SUPERFAMILY SSF141868 771 999 2.48E-24 T 22-04-2016 IPR001633 EAL domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 SMART SM00267 588 755 2.6E-58 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 475 595 2.8E-7 T 22-04-2016 IPR000014 PAS domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 595 754 2.8E-40 T 22-04-2016 IPR000160 GGDEF domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 SMART SM00091 479 546 8.7E-6 T 22-04-2016 IPR000014 PAS domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 Pfam PF00563 EAL domain 771 998 3.8E-23 T 22-04-2016 IPR001633 EAL domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 Pfam PF08448 PAS fold 485 590 5.7E-10 T 22-04-2016 IPR013656 PAS fold-4 TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 Gene3D G3DSA:3.20.20.450 769 1000 3.2E-23 T 22-04-2016 IPR001633 EAL domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 Gene3D G3DSA:3.30.70.270 601 763 2.9E-55 T 22-04-2016 TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 PANTHER PTHR10799:SF710 562 861 9.7E-43 T 22-04-2016 TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 SUPERFAMILY SSF55785 464 584 1.62E-17 T 22-04-2016 IPR000014 PAS domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 SUPERFAMILY SSF55073 604 757 2.28E-47 T 22-04-2016 IPR029787 Nucleotide cyclase TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 SMART SM00052 765 1011 1.9E-6 T 22-04-2016 IPR001633 EAL domain TRD_RS13735 37c1fa895331cee8e845db7f3f6fc8a4 1056 PANTHER PTHR10799 562 861 9.7E-43 T 22-04-2016 TRD_RS06005 e20de7126f3e42702b6bd5f79373e0b5 289 Pfam PF02274 Amidinotransferase 40 287 4.6E-40 T 22-04-2016 TRD_RS06005 e20de7126f3e42702b6bd5f79373e0b5 289 Gene3D G3DSA:3.75.10.10 5 287 3.6E-62 T 22-04-2016 TRD_RS06005 e20de7126f3e42702b6bd5f79373e0b5 289 PANTHER PTHR12737 18 288 2.3E-45 T 22-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 TRD_RS06005 e20de7126f3e42702b6bd5f79373e0b5 289 SUPERFAMILY SSF55909 1 287 1.55E-55 T 22-04-2016 TRD_RS10490 fa92aa0c3ac6afdbe2942631466e1aa5 299 Pfam PF00149 Calcineurin-like phosphoesterase 54 287 4.0E-14 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS10490 fa92aa0c3ac6afdbe2942631466e1aa5 299 Gene3D G3DSA:3.60.21.10 53 299 8.4E-42 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS10490 fa92aa0c3ac6afdbe2942631466e1aa5 299 PANTHER PTHR30337 53 299 2.7E-48 T 22-04-2016 TRD_RS10490 fa92aa0c3ac6afdbe2942631466e1aa5 299 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 54 299 6.8E-35 T 22-04-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 TRD_RS10490 fa92aa0c3ac6afdbe2942631466e1aa5 299 SUPERFAMILY SSF56300 54 298 2.8E-38 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS10490 fa92aa0c3ac6afdbe2942631466e1aa5 299 PANTHER PTHR30337:SF0 53 299 2.7E-48 T 22-04-2016 TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 Gene3D G3DSA:1.10.10.10 161 206 3.2E-4 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 Pfam PF02631 RecX family 88 207 3.0E-30 T 22-04-2016 IPR003783 Regulatory protein RecX GO:0006282 TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 Gene3D G3DSA:1.10.10.10 112 153 2.7E-6 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 Gene3D G3DSA:1.10.10.10 66 110 8.3E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 Hamap MF_01114 Regulatory protein RecX [recX]. 46 212 15.821 T 22-04-2016 IPR003783 Regulatory protein RecX GO:0006282 TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 PANTHER PTHR33602 6 208 1.3E-34 T 22-04-2016 TRD_RS05780 9b3f7499c31dceabfe3f16ea4bd672fb 222 PANTHER PTHR33602:SF1 6 208 1.3E-34 T 22-04-2016 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 Gene3D G3DSA:3.90.180.10 2 188 9.8E-65 T 22-04-2016 IPR011032 GroES-like TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 PANTHER PTHR11695 127 368 1.9E-122 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 PANTHER PTHR11695 15 107 1.9E-122 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 SUPERFAMILY SSF51735 157 333 3.68E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 Pfam PF00107 Zinc-binding dehydrogenase 196 324 1.6E-33 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 SUPERFAMILY SSF50129 318 367 4.71E-8 T 22-04-2016 IPR011032 GroES-like TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 153 6.6E-29 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 Gene3D G3DSA:3.40.50.720 189 308 1.9E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 PANTHER PTHR11695:SF269 127 368 1.9E-122 T 22-04-2016 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 PANTHER PTHR11695:SF269 15 107 1.9E-122 T 22-04-2016 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 SMART SM00829 13 367 7.7E-6 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 TRD_RS03510 ad969f9e766952332c967dc794a7cf9e 369 SUPERFAMILY SSF50129 1 192 5.63E-65 T 22-04-2016 IPR011032 GroES-like TRD_RS07115 49daab32d385512f89c001754d241412 51 PANTHER PTHR40393 2 51 3.0E-12 T 22-04-2016 TRD_RS07115 49daab32d385512f89c001754d241412 51 PANTHER PTHR40393:SF1 2 51 3.0E-12 T 22-04-2016 TRD_RS07115 49daab32d385512f89c001754d241412 51 Gene3D G3DSA:2.20.28.30 2 27 0.001 T 22-04-2016 IPR006591 RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 GO:0003677|GO:0003899|GO:0006351 TRD_RS07115 49daab32d385512f89c001754d241412 51 TIGRFAM TIGR01206 lysW: lysine biosynthesis protein LysW 2 51 6.6E-22 T 22-04-2016 IPR005906 Lysine biosynthesis protein LysW UniPathway: UPA00033 TRD_RS00955 9b8aa4ef4d1c51cdd8164c2336f0c094 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 4 201 5.9E-56 T 22-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 TRD_RS00955 9b8aa4ef4d1c51cdd8164c2336f0c094 213 Gene3D G3DSA:3.20.20.70 2 204 2.5E-70 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00955 9b8aa4ef4d1c51cdd8164c2336f0c094 213 PANTHER PTHR30246:SF4 1 209 2.8E-77 T 22-04-2016 TRD_RS00955 9b8aa4ef4d1c51cdd8164c2336f0c094 213 Pfam PF01081 KDPG and KHG aldolase 4 191 2.1E-43 T 22-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 TRD_RS00955 9b8aa4ef4d1c51cdd8164c2336f0c094 213 SUPERFAMILY SSF51569 2 199 7.33E-60 T 22-04-2016 TRD_RS00955 9b8aa4ef4d1c51cdd8164c2336f0c094 213 PANTHER PTHR30246 1 209 2.8E-77 T 22-04-2016 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 Pfam PF00005 ABC transporter 22 163 2.0E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 Pfam PF13732 Domain of unknown function (DUF4162) 218 299 2.9E-7 T 22-04-2016 IPR025302 Domain of unknown function DUF4162 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 SMART SM00382 29 220 8.4E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 Gene3D G3DSA:3.40.50.300 2 227 5.2E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 301 1.0E-106 T 22-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 PANTHER PTHR24220 6 241 2.3E-128 T 22-04-2016 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 PANTHER PTHR24220 269 305 2.3E-128 T 22-04-2016 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 PANTHER PTHR24220:SF429 6 241 2.3E-128 T 22-04-2016 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 PANTHER PTHR24220:SF429 269 305 2.3E-128 T 22-04-2016 TRD_RS02560 aa78a423be6034b830559c54cac69be4 306 SUPERFAMILY SSF52540 4 225 2.3E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07270 c6cfd74fdc11bea2503257ba71d1eaf0 127 Pfam PF01521 Iron-sulphur cluster biosynthesis 7 107 4.4E-20 T 22-04-2016 IPR000361 FeS cluster biogenesis TRD_RS07270 c6cfd74fdc11bea2503257ba71d1eaf0 127 Gene3D G3DSA:2.60.300.12 2 98 7.6E-33 T 22-04-2016 IPR000361 FeS cluster biogenesis TRD_RS07270 c6cfd74fdc11bea2503257ba71d1eaf0 127 SUPERFAMILY SSF89360 6 100 3.92E-32 T 22-04-2016 IPR000361 FeS cluster biogenesis TRD_RS07270 c6cfd74fdc11bea2503257ba71d1eaf0 127 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 93 110 - T 22-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site TRD_RS07270 c6cfd74fdc11bea2503257ba71d1eaf0 127 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 111 9.9E-38 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 TRD_RS07270 c6cfd74fdc11bea2503257ba71d1eaf0 127 PANTHER PTHR10072 6 111 8.0E-48 T 22-04-2016 TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 Gene3D G3DSA:3.90.420.10 192 367 8.9E-52 T 22-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 PANTHER PTHR19372 187 484 2.6E-66 T 22-04-2016 TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 Gene3D G3DSA:2.60.40.650 370 481 7.9E-26 T 22-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 Pfam PF00174 Oxidoreductase molybdopterin binding domain 211 358 4.0E-39 T 22-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 SUPERFAMILY SSF81296 370 481 1.05E-27 T 22-04-2016 IPR014756 Immunoglobulin E-set TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 370 479 2.6E-9 T 22-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 TRD_RS05360 873a0f973d2d886d2cdc5283448422d3 485 SUPERFAMILY SSF56524 193 399 1.05E-54 T 22-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 Gene3D G3DSA:3.30.280.10 1 100 5.2E-37 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.3E-33 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 Pfam PF00547 Urease, gamma subunit 1 99 4.7E-36 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 PANTHER PTHR33569 2 100 1.1E-31 T 22-04-2016 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 PANTHER PTHR33569:SF1 2 100 1.1E-31 T 22-04-2016 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 SUPERFAMILY SSF54111 1 100 2.62E-33 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS02470 1403b56b1f435abab941af733a0868da 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-25 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:3.30.200.20 4 75 2.9E-27 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 SUPERFAMILY SSF56112 6 272 9.31E-88 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 SMART SM00740 391 457 5.8E-10 T 22-04-2016 IPR005543 PASTA domain TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 SMART SM00740 458 522 9.1E-8 T 22-04-2016 IPR005543 PASTA domain TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 22-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 22-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 PANTHER PTHR24362:SF160 426 510 4.1E-118 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 PANTHER PTHR24362:SF160 5 309 4.1E-118 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 PANTHER PTHR24362:SF160 339 392 4.1E-118 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF00069 Protein kinase domain 10 264 1.4E-54 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 PANTHER PTHR24362 5 309 4.1E-118 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 PANTHER PTHR24362 339 392 4.1E-118 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF03793 PASTA domain 526 597 2.4E-5 T 22-04-2016 IPR005543 PASTA domain TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF03793 PASTA domain 397 457 2.9E-12 T 22-04-2016 IPR005543 PASTA domain TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 Pfam PF03793 PASTA domain 467 521 9.3E-8 T 22-04-2016 IPR005543 PASTA domain TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 PANTHER PTHR24362 426 510 4.1E-118 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 Gene3D G3DSA:1.10.510.10 76 266 2.5E-57 T 22-04-2016 TRD_RS06160 8eb982a171edc8b913dc8be8a6f8c98f 604 SMART SM00220 10 267 4.9E-77 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 TRD_RS04210 b1fcf5a4acd66f30e0c74ab85f780171 333 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 305 1.2E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04210 b1fcf5a4acd66f30e0c74ab85f780171 333 PANTHER PTHR10366:SF427 3 330 1.5E-82 T 22-04-2016 TRD_RS04210 b1fcf5a4acd66f30e0c74ab85f780171 333 Gene3D G3DSA:3.40.50.720 3 183 7.3E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04210 b1fcf5a4acd66f30e0c74ab85f780171 333 PANTHER PTHR10366 3 330 1.5E-82 T 22-04-2016 TRD_RS04210 b1fcf5a4acd66f30e0c74ab85f780171 333 SUPERFAMILY SSF51735 1 312 3.38E-75 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04210 b1fcf5a4acd66f30e0c74ab85f780171 333 Gene3D G3DSA:3.90.25.10 184 311 5.2E-20 T 22-04-2016 TRD_RS01170 13a9e06e08767007799630904d1cebea 304 PANTHER PTHR11732 4 304 4.6E-63 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta TRD_RS01170 13a9e06e08767007799630904d1cebea 304 Pfam PF00248 Aldo/keto reductase family 21 300 2.4E-42 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain TRD_RS01170 13a9e06e08767007799630904d1cebea 304 SUPERFAMILY SSF51430 4 303 1.7E-55 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain TRD_RS01170 13a9e06e08767007799630904d1cebea 304 Gene3D G3DSA:3.20.20.100 4 304 9.9E-51 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain TRD_RS01170 13a9e06e08767007799630904d1cebea 304 PANTHER PTHR11732:SF241 4 304 4.6E-63 T 22-04-2016 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Pfam PF03129 Anticodon binding domain 294 390 1.3E-17 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 149 160 9.4E-8 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 110 121 9.4E-8 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 69 87 9.4E-8 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 PRINTS PR01046 Prolyl-tRNA synthetase signature 140 148 9.4E-8 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 TIGRFAM TIGR00408 proS_fam_I: proline--tRNA ligase 13 484 2.4E-166 T 22-04-2016 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 420 484 3.1E-19 T 22-04-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 SUPERFAMILY SSF64586 413 484 1.14E-18 T 22-04-2016 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Gene3D G3DSA:3.30.110.30 412 483 1.1E-24 T 22-04-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 PANTHER PTHR11451 13 458 2.0E-225 T 22-04-2016 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Hamap MF_01571 Proline--tRNA ligase [proS]. 11 484 42.298 T 22-04-2016 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Gene3D G3DSA:3.40.50.800 288 407 8.1E-40 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Gene3D G3DSA:3.30.930.10 10 287 8.6E-106 T 22-04-2016 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 105 275 5.7E-15 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 SUPERFAMILY SSF55681 15 281 9.64E-73 T 22-04-2016 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 PANTHER PTHR11451:SF6 13 458 2.0E-225 T 22-04-2016 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 SUPERFAMILY SSF52954 283 408 1.31E-31 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS02785 f49028c0a6a17ffc69d5117ec5ba811f 484 SMART SM00946 417 484 1.7E-24 T 22-04-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS08545 1837b06da91511bd0f28a6e778850553 291 PANTHER PTHR30425:SF2 1 291 2.0E-136 T 22-04-2016 TRD_RS08545 1837b06da91511bd0f28a6e778850553 291 SUPERFAMILY SSF161098 32 275 8.72E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08545 1837b06da91511bd0f28a6e778850553 291 PANTHER PTHR30425 1 291 2.0E-136 T 22-04-2016 TRD_RS08545 1837b06da91511bd0f28a6e778850553 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 290 8.0E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08545 1837b06da91511bd0f28a6e778850553 291 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 20 286 6.3E-83 T 22-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 TRD_RS08545 1837b06da91511bd0f28a6e778850553 291 Gene3D G3DSA:1.10.3720.10 23 288 1.6E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04615 9e57d83ac93188b3c0bd92a64576ed8f 289 PANTHER PTHR13773 151 280 1.0E-45 T 22-04-2016 TRD_RS04615 9e57d83ac93188b3c0bd92a64576ed8f 289 PANTHER PTHR13773:SF0 151 280 1.0E-45 T 22-04-2016 TRD_RS04615 9e57d83ac93188b3c0bd92a64576ed8f 289 PANTHER PTHR13773:SF0 3 127 1.0E-45 T 22-04-2016 TRD_RS04615 9e57d83ac93188b3c0bd92a64576ed8f 289 Pfam PF01148 Cytidylyltransferase family 3 280 1.4E-49 T 22-04-2016 TRD_RS04615 9e57d83ac93188b3c0bd92a64576ed8f 289 PANTHER PTHR13773 3 127 1.0E-45 T 22-04-2016 TRD_RS04615 9e57d83ac93188b3c0bd92a64576ed8f 289 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 242 268 - T 22-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 TRD_RS07605 b6906ac1fcd234bd099dffc4165e29da 254 SUPERFAMILY SSF51621 1 244 1.8E-69 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS07605 b6906ac1fcd234bd099dffc4165e29da 254 PANTHER PTHR30502 1 254 3.1E-79 T 22-04-2016 TRD_RS07605 b6906ac1fcd234bd099dffc4165e29da 254 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 17 231 4.7E-34 T 22-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 TRD_RS07605 b6906ac1fcd234bd099dffc4165e29da 254 Gene3D G3DSA:3.20.20.60 2 247 7.1E-68 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 PRINTS PR01650 Bacterial translocase SecE signature 73 89 6.0E-5 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 PRINTS PR01650 Bacterial translocase SecE signature 29 49 6.0E-5 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 PRINTS PR01650 Bacterial translocase SecE signature 53 73 6.0E-5 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 36 86 1.6E-14 T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 Gene3D G3DSA:1.20.5.1030 33 86 3.3E-14 T 22-04-2016 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 34 86 5.3E-11 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 TRD_RS03110 616193972ef5e14f1647b08e1384b2c3 89 Hamap MF_00422 Protein translocase subunit SecE [secE]. 30 85 11.237 T 22-04-2016 IPR022943 Preprotein translocase subunit SecE TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 Gene3D G3DSA:3.40.50.300 18 183 2.1E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 PANTHER PTHR11669:SF8 276 282 2.8E-54 T 22-04-2016 TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 PANTHER PTHR11669:SF8 18 231 2.8E-54 T 22-04-2016 TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 SUPERFAMILY SSF52540 18 221 3.79E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 PANTHER PTHR11669 18 231 2.8E-54 T 22-04-2016 TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 PANTHER PTHR11669 276 282 2.8E-54 T 22-04-2016 TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 26 214 4.3E-59 T 22-04-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS00010 a8d79ef3c7db4a466c79a0888b2ec308 350 Pfam PF13177 DNA polymerase III, delta subunit 21 184 1.2E-50 T 22-04-2016 TRD_RS00960 8b7056a7c0fdafae5b8623d69dc0c660 287 Gene3D G3DSA:3.40.50.10330 11 122 3.9E-21 T 22-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS00960 8b7056a7c0fdafae5b8623d69dc0c660 287 SUPERFAMILY SSF111331 5 267 2.88E-65 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain TRD_RS00960 8b7056a7c0fdafae5b8623d69dc0c660 287 Pfam PF01513 ATP-NAD kinase 47 248 2.8E-46 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS00960 8b7056a7c0fdafae5b8623d69dc0c660 287 Hamap MF_00361 NAD kinase [nadK]. 3 265 27.204 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS00960 8b7056a7c0fdafae5b8623d69dc0c660 287 PANTHER PTHR20275 3 279 1.1E-54 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS00960 8b7056a7c0fdafae5b8623d69dc0c660 287 Gene3D G3DSA:2.60.200.30 123 240 5.2E-33 T 22-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 21 270 2.2E-111 T 22-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 PANTHER PTHR24220 22 269 1.5E-119 T 22-04-2016 TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 Gene3D G3DSA:3.40.50.300 16 262 8.6E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 Pfam PF00005 ABC transporter 37 189 2.7E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 PANTHER PTHR24220:SF468 22 269 1.5E-119 T 22-04-2016 TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 SUPERFAMILY SSF52540 20 264 1.57E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08540 37fb6ea71be72e1c5f3aea84154ca031 270 SMART SM00382 45 257 1.5E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00050 664529ba7400e51527dbf4837ecdffd5 179 PANTHER PTHR11019 4 164 1.3E-54 T 22-04-2016 TRD_RS00050 664529ba7400e51527dbf4837ecdffd5 179 Pfam PF01965 DJ-1/PfpI family 7 169 6.0E-56 T 22-04-2016 IPR002818 DJ-1/PfpI TRD_RS00050 664529ba7400e51527dbf4837ecdffd5 179 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 9 171 6.2E-59 T 22-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 TRD_RS00050 664529ba7400e51527dbf4837ecdffd5 179 PANTHER PTHR11019:SF115 4 164 1.3E-54 T 22-04-2016 TRD_RS00050 664529ba7400e51527dbf4837ecdffd5 179 Gene3D G3DSA:3.40.50.880 3 172 8.6E-58 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00050 664529ba7400e51527dbf4837ecdffd5 179 SUPERFAMILY SSF52317 6 171 1.36E-50 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS09335 b83cc0fdcd8ea71f8937bcb2785783f7 89 PANTHER PTHR12029 1 71 7.5E-18 T 22-04-2016 TRD_RS09335 b83cc0fdcd8ea71f8937bcb2785783f7 89 Pfam PF00588 SpoU rRNA Methylase family 1 42 2.2E-10 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 TRD_RS09335 b83cc0fdcd8ea71f8937bcb2785783f7 89 Gene3D G3DSA:3.40.1280.10 1 58 5.8E-19 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal TRD_RS09335 b83cc0fdcd8ea71f8937bcb2785783f7 89 SUPERFAMILY SSF75217 1 66 4.71E-18 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 9 400 54.8 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Pfam PF02772 S-adenosylmethionine synthetase, central domain 132 248 2.0E-43 T 22-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 133 143 - T 22-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 250 389 9.8E-66 T 22-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 SUPERFAMILY SSF55973 127 249 3.14E-48 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 13 397 2.5E-166 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 PIRSF PIRSF000497 5 400 4.2E-162 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 SUPERFAMILY SSF55973 250 401 1.61E-66 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Gene3D G3DSA:3.30.300.10 18 151 4.0E-38 T 22-04-2016 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 SUPERFAMILY SSF55973 11 117 3.92E-40 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 11 108 1.3E-36 T 22-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 PANTHER PTHR11964 6 395 1.9E-230 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 276 284 - T 22-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Gene3D G3DSA:3.30.300.10 152 250 1.0E-42 T 22-04-2016 TRD_RS04215 dcfa2f53201befed9fd473670883db4c 409 Gene3D G3DSA:3.30.300.10 261 400 2.0E-66 T 22-04-2016 TRD_RS08090 169cf9cda2f9390b151aebf9f005a990 84 Pfam PF04232 Stage V sporulation protein S (SpoVS) 1 82 2.1E-35 T 22-04-2016 IPR007347 Sporulation stage V, protein S TRD_RS08090 169cf9cda2f9390b151aebf9f005a990 84 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 1 84 7.0E-16 T 22-04-2016 IPR007347 Sporulation stage V, protein S TRD_RS08090 169cf9cda2f9390b151aebf9f005a990 84 PANTHER PTHR35331 1 84 3.2E-44 T 22-04-2016 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Gene3D G3DSA:1.20.5.100 203 229 6.2E-19 T 22-04-2016 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SUPERFAMILY SSF48179 199 296 1.16E-32 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Gene3D G3DSA:3.40.50.720 230 433 4.9E-73 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 415 5.4E-32 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SMART SM00984 314 415 1.4E-45 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 185 2.0E-62 T 22-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 411 4.4E-145 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SUPERFAMILY SSF52413 301 425 1.29E-36 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 PIRSF PIRSF000124 2 430 1.4E-144 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 PANTHER PTHR11374:SF18 1 435 1.7E-228 T 22-04-2016 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 PIRSF PIRSF500134 2 433 1.7E-169 T 22-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 SUPERFAMILY SSF51735 3 189 2.27E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 291 1.3E-38 T 22-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 Gene3D G3DSA:3.40.50.720 3 202 7.8E-69 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03725 36f6fe46445b511b7a4faaf5e2dd0b2a 438 PANTHER PTHR11374 1 435 1.7E-228 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 TRD_RS13455 3cb34b29a4dbb8955d3db35e437c2d38 203 Pfam PF09858 Predicted membrane protein (DUF2085) 75 164 1.6E-29 T 22-04-2016 IPR019206 Protein of unknown function DUF2085, transmembrane TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 Pfam PF00364 Biotin-requiring enzyme 93 163 3.8E-13 T 22-04-2016 IPR000089 Biotin/lipoyl attachment TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PANTHER PTHR23151 89 169 3.3E-25 T 22-04-2016 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PANTHER PTHR23151 6 65 3.3E-25 T 22-04-2016 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PANTHER PTHR23151:SF64 89 169 3.3E-25 T 22-04-2016 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PANTHER PTHR23151:SF64 6 65 3.3E-25 T 22-04-2016 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 127 140 2.2E-9 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 112 126 2.2E-9 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 95 108 2.2E-9 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 SUPERFAMILY SSF51230 90 165 4.06E-17 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 Gene3D G3DSA:2.40.50.100 91 165 2.6E-20 T 22-04-2016 TRD_RS07875 95295223511ae0aec4a782b53e56c58b 180 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 122 139 - T 22-04-2016 IPR001882 Biotin-binding site TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PANTHER PTHR22942:SF1 3 334 6.4E-203 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 242 271 3.8E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 126 155 3.8E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 209 237 3.8E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 296 313 3.8E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 164 193 3.8E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PRINTS PR00142 RecA protein signature 92 121 3.8E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 Gene3D G3DSA:3.40.50.300 33 266 4.4E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00905 8745757e42763f5dffda74308a660e32 354 Gene3D G3DSA:3.30.250.10 269 324 1.8E-24 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal TRD_RS00905 8745757e42763f5dffda74308a660e32 354 Pfam PF00154 recA bacterial DNA recombination protein 5 267 3.5E-144 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 SUPERFAMILY SSF52540 4 266 1.05E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00905 8745757e42763f5dffda74308a660e32 354 SUPERFAMILY SSF54752 268 324 4.06E-19 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal TRD_RS00905 8745757e42763f5dffda74308a660e32 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 2 323 4.0E-174 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 PANTHER PTHR22942 3 334 6.4E-203 T 22-04-2016 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 Hamap MF_00268 Protein RecA [recA]. 3 328 52.451 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 TRD_RS00905 8745757e42763f5dffda74308a660e32 354 SMART SM00382 56 227 9.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00905 8745757e42763f5dffda74308a660e32 354 ProSitePatterns PS00321 recA signature. 212 220 - T 22-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 300 7.1E-20 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 320 4.1E-28 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 SMART SM00382 33 233 2.4E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 PANTHER PTHR24220 6 323 2.2E-167 T 22-04-2016 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 SUPERFAMILY SSF52540 33 319 4.94E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 Pfam PF00005 ABC transporter 25 183 2.1E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 PANTHER PTHR24220:SF535 6 323 2.2E-167 T 22-04-2016 TRD_RS07620 2ed15e6db694adc1c08ec3363ebacf08 341 Gene3D G3DSA:3.40.50.300 3 257 8.2E-80 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 77 92 2.3E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 126 146 2.3E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 60 76 2.3E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 112 2.3E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 SMART SM00418 42 121 0.0063 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 Pfam PF12802 MarR family 42 100 4.5E-18 T 22-04-2016 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 PANTHER PTHR33164 12 160 8.0E-24 T 22-04-2016 TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 Gene3D G3DSA:1.10.10.10 13 153 2.6E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 SUPERFAMILY SSF46785 13 149 5.82E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS13605 5b0a4c2feb54cfbc1d7db67b25fb3021 162 SMART SM00347 36 136 9.2E-21 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 Gene3D G3DSA:3.40.50.1100 108 186 5.4E-22 T 22-04-2016 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 11 400 53.826 T 22-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 16 398 1.5E-192 T 22-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 PIRSF PIRSF001413 2 404 1.1E-166 T 22-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 Gene3D G3DSA:3.40.50.1100 187 401 9.9E-98 T 22-04-2016 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 PANTHER PTHR10314 16 400 1.2E-233 T 22-04-2016 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 SUPERFAMILY SSF53686 12 398 6.29E-149 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 90 104 - T 22-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 63 387 1.4E-47 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS00515 eb660328e826675a084e0a98065bea4c 404 PANTHER PTHR10314:SF3 16 400 1.2E-233 T 22-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 173 189 4.8E-13 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 132 149 4.8E-13 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 36 49 4.8E-13 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 10 29 4.8E-13 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 99 115 4.8E-13 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PIRSF PIRSF036483 5 396 3.6E-93 T 22-04-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 Gene3D G3DSA:3.40.50.450 8 189 1.7E-41 T 22-04-2016 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PANTHER PTHR13697:SF19 95 369 9.8E-31 T 22-04-2016 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 5 396 37.193 T 22-04-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 Pfam PF00365 Phosphofructokinase 9 322 6.9E-42 T 22-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 Gene3D G3DSA:3.40.50.460 190 303 1.1E-5 T 22-04-2016 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 SUPERFAMILY SSF53784 8 389 1.83E-74 T 22-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS05085 109e0f0db76b1b69acafd36d47ee445d 398 PANTHER PTHR13697 95 369 9.8E-31 T 22-04-2016 TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 PANTHER PTHR30013 3 292 2.6E-51 T 22-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 Gene3D G3DSA:3.40.50.700 11 212 1.4E-46 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 PIRSF PIRSF000310 1 343 1.5E-92 T 22-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 SUPERFAMILY SSF56770 11 293 3.92E-69 T 22-04-2016 TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 Gene3D G3DSA:4.10.480.10 214 293 8.4E-27 T 22-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 214 292 2.4E-24 T 22-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal TRD_RS08780 8fe40a1b8f8d03e34ed33582226020b8 346 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 23 191 1.7E-27 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 TRD_RS06535 4c7c39e375699bae22add90b7e08b81b 182 SUPERFAMILY SSF50475 19 170 1.13E-43 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 TRD_RS06535 4c7c39e375699bae22add90b7e08b81b 182 PANTHER PTHR30466:SF2 17 168 4.0E-54 T 22-04-2016 TRD_RS06535 4c7c39e375699bae22add90b7e08b81b 182 SMART SM00903 29 169 2.2E-49 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 TRD_RS06535 4c7c39e375699bae22add90b7e08b81b 182 PANTHER PTHR30466 17 168 4.0E-54 T 22-04-2016 TRD_RS06535 4c7c39e375699bae22add90b7e08b81b 182 Pfam PF01613 Flavin reductase like domain 29 168 3.4E-33 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 TRD_RS06535 4c7c39e375699bae22add90b7e08b81b 182 Gene3D G3DSA:2.30.110.10 18 168 1.5E-49 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 PANTHER PTHR31964 1 140 1.9E-32 T 22-04-2016 TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 Gene3D G3DSA:3.40.50.620 1 140 2.1E-39 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 SUPERFAMILY SSF52402 2 140 1.67E-38 T 22-04-2016 TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 Pfam PF00582 Universal stress protein family 1 140 2.4E-35 T 22-04-2016 IPR006016 UspA GO:0006950 TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 PANTHER PTHR31964:SF26 1 140 1.9E-32 T 22-04-2016 TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 PRINTS PR01438 Universal stress protein signature 100 112 5.5E-17 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 PRINTS PR01438 Universal stress protein signature 2 20 5.5E-17 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS09230 c4cd50e209c7f30e430c6bb1971e2570 141 PRINTS PR01438 Universal stress protein signature 118 140 5.5E-17 T 22-04-2016 IPR006015 Universal stress protein A TRD_RS01385 f640117a8385d71ff1daee8173225283 185 SUPERFAMILY SSF53271 12 180 3.54E-53 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS01385 f640117a8385d71ff1daee8173225283 185 PANTHER PTHR22573:SF56 11 180 1.9E-73 T 22-04-2016 TRD_RS01385 f640117a8385d71ff1daee8173225283 185 Pfam PF00156 Phosphoribosyl transferase domain 23 165 7.6E-24 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 TRD_RS01385 f640117a8385d71ff1daee8173225283 185 Gene3D G3DSA:3.40.50.2020 10 181 1.5E-73 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS01385 f640117a8385d71ff1daee8173225283 185 PANTHER PTHR22573 11 180 1.9E-73 T 22-04-2016 TRD_RS01385 f640117a8385d71ff1daee8173225283 185 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 15 178 4.8E-64 T 22-04-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 PANTHER PTHR33162:SF1 1 108 1.9E-19 T 22-04-2016 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 3 23 7.3E-7 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 23 42 7.3E-7 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 PANTHER PTHR33162 1 108 1.9E-19 T 22-04-2016 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 79 16.939 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 51 1.8E-16 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 TRD_RS03705 d990d7710bb1c4695c755ac61bb2f9de 171 Pfam PF02416 mttA/Hcf106 family 6 54 4.4E-16 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 TRD_RS03585 2541d8c3a53a52ec1a091e4e8d30bcc7 62 Pfam PF02416 mttA/Hcf106 family 10 54 7.3E-18 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 TRD_RS03585 2541d8c3a53a52ec1a091e4e8d30bcc7 62 PANTHER PTHR33162 8 55 1.9E-14 T 22-04-2016 TRD_RS03585 2541d8c3a53a52ec1a091e4e8d30bcc7 62 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 6 26 6.6E-5 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 TRD_RS03585 2541d8c3a53a52ec1a091e4e8d30bcc7 62 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 26 45 6.6E-5 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 TRD_RS03585 2541d8c3a53a52ec1a091e4e8d30bcc7 62 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 6 54 16.973 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 TRD_RS03585 2541d8c3a53a52ec1a091e4e8d30bcc7 62 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 8 54 2.2E-19 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 SUPERFAMILY SSF54292 1 78 5.24E-26 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 Gene3D G3DSA:3.10.20.30 1 74 5.9E-29 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 SUPERFAMILY SSF47741 84 153 1.57E-35 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 Pfam PF01799 [2Fe-2S] binding domain 73 145 1.4E-33 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 59 2.2E-5 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 PANTHER PTHR11908 1 144 1.6E-45 T 22-04-2016 TRD_RS05625 63aa6e4f301c36cafb7cc97fe3a2f530 156 Gene3D G3DSA:1.10.150.120 75 154 1.0E-39 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 PANTHER PTHR33866:SF2 2 114 1.1E-44 T 22-04-2016 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 PANTHER PTHR33866 2 114 1.1E-44 T 22-04-2016 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 4.5E-33 T 22-04-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 112 9.2E-39 T 22-04-2016 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 28.236 T 22-04-2016 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 SUPERFAMILY SSF56276 3 114 1.69E-35 T 22-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 TRD_RS01050 0e532ccc0d7a46dcb87b0b4e728e7071 116 Gene3D G3DSA:3.60.90.10 2 113 2.7E-38 T 22-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 24.339 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 PIRSF PIRSF029827 1 90 2.2E-29 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 PANTHER PTHR36965:SF1 2 92 6.3E-40 T 22-04-2016 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 4.7E-35 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 4.0E-23 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 Gene3D G3DSA:1.10.3880.10 1 89 5.2E-33 T 22-04-2016 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 SUPERFAMILY SSF111148 1 89 1.11E-32 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 TRD_RS04200 d19503fe9046a4d6d8d74d8b86a306a4 102 PANTHER PTHR36965 2 92 6.3E-40 T 22-04-2016 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 PANTHER PTHR30465 1 58 1.5E-108 T 22-04-2016 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 PANTHER PTHR30465:SF74 1 58 1.5E-108 T 22-04-2016 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 PANTHER PTHR30465:SF74 85 335 1.5E-108 T 22-04-2016 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 139 334 1.6E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 PANTHER PTHR30465 85 335 1.5E-108 T 22-04-2016 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 SUPERFAMILY SSF161098 115 322 1.09E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01825 56e1cec750165c45e14d23a641dc6f7e 335 Gene3D G3DSA:1.10.3720.10 116 329 1.1E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 189 1.9E-43 T 22-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 PANTHER PTHR35561:SF1 1 191 8.2E-39 T 22-04-2016 TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 Gene3D G3DSA:3.90.1140.10 6 190 4.6E-53 T 22-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 SUPERFAMILY SSF55144 5 190 3.66E-44 T 22-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 PANTHER PTHR35561 1 191 8.2E-39 T 22-04-2016 TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 190 25.644 T 22-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 TRD_RS00445 08254e55e5a2f2fc341c1eca18228dd1 191 Pfam PF13563 2'-5' RNA ligase superfamily 20 173 2.4E-19 T 22-04-2016 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Pfam PF05192 MutS domain III 269 555 2.8E-40 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 686 702 - T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Pfam PF00488 MutS domain V 608 797 2.7E-84 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Pfam PF01624 MutS domain I 3 112 5.9E-38 T 22-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 SUPERFAMILY SSF55271 3 109 4.71E-35 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 2 850 24.689 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 SUPERFAMILY SSF53150 108 265 1.83E-35 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Gene3D G3DSA:3.40.50.300 563 798 2.6E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 SMART SM00533 282 587 3.6E-95 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 SUPERFAMILY SSF52540 563 798 7.38E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 SMART SM00534 605 794 8.7E-122 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Pfam PF05190 MutS family domain IV 424 515 1.4E-28 T 22-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Gene3D G3DSA:3.40.1170.10 3 114 2.9E-42 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Gene3D G3DSA:3.30.420.110 120 254 1.0E-33 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 PANTHER PTHR11361 3 814 0.0 T 22-04-2016 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Pfam PF05188 MutS domain II 123 251 1.5E-16 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 PIRSF PIRSF037677 1 825 3.9E-173 T 22-04-2016 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 Gene3D G3DSA:1.10.1420.10 262 464 4.7E-53 T 22-04-2016 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 3 855 1.6E-297 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 SUPERFAMILY SSF48334 266 559 1.44E-83 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 TRD_RS05155 e95b432d8a014eb42ec315d36a7b5d4b 862 PANTHER PTHR11361:SF86 3 814 0.0 T 22-04-2016 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 Pfam PF13646 HEAT repeats 302 372 8.6E-10 T 22-04-2016 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 Gene3D G3DSA:1.25.10.10 300 374 2.3E-8 T 22-04-2016 IPR011989 Armadillo-like helical TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 Pfam PF08331 Domain of unknown function (DUF1730) 60 135 1.6E-19 T 22-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 Gene3D G3DSA:3.30.70.20 187 256 5.3E-6 T 22-04-2016 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 PANTHER PTHR30002 5 368 4.1E-111 T 22-04-2016 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 PANTHER PTHR30002:SF4 5 368 4.1E-111 T 22-04-2016 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 SUPERFAMILY SSF46548 134 252 4.71E-17 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 9 344 1.1E-97 T 22-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 SUPERFAMILY SSF48371 298 374 1.31E-8 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 TRD_RS04895 8431f749860bdfe50b87ba10911c42c8 392 Pfam PF13484 4Fe-4S double cluster binding domain 187 250 2.9E-18 T 22-04-2016 TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 109 199 1.1E-30 T 22-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 PANTHER PTHR23091 109 236 2.7E-41 T 22-04-2016 TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 PANTHER PTHR23091 30 76 2.7E-41 T 22-04-2016 TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 Pfam PF00583 Acetyltransferase (GNAT) family 110 180 5.2E-14 T 22-04-2016 IPR000182 GNAT domain GO:0008080 TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 Gene3D G3DSA:3.40.630.30 28 77 1.7E-31 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 Gene3D G3DSA:3.40.630.30 110 200 1.7E-31 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 SUPERFAMILY SSF55729 29 200 1.03E-27 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 PANTHER PTHR23091:SF1 109 236 2.7E-41 T 22-04-2016 TRD_RS00850 a3a7fe318708299cea6774ca0ffc00ee 236 PANTHER PTHR23091:SF1 30 76 2.7E-41 T 22-04-2016 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 4.5E-132 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.5E-31 T 22-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 SMART SM01383 42 118 1.3E-45 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 PIRSF PIRSF002158 5 274 7.6E-97 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 Gene3D G3DSA:2.40.50.140 1 114 2.8E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 Gene3D G3DSA:2.30.30.30 119 195 3.7E-35 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 SUPERFAMILY SSF50249 3 124 6.85E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 3.6E-54 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 PANTHER PTHR13691 1 272 1.7E-140 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 Gene3D G3DSA:4.10.950.10 196 272 3.8E-30 T 22-04-2016 IPR014726 Ribosomal protein L2, domain 3 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 SMART SM01382 124 252 1.3E-84 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 SUPERFAMILY SSF50104 126 272 5.3E-61 T 22-04-2016 IPR008991 Translation protein SH3-like domain TRD_RS04510 8051968b88755312719cf1bc4dccb620 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 48.019 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 230 399 3.9E-16 T 22-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 SUPERFAMILY SSF50249 16 73 2.11E-8 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 384 394 - T 22-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 332 363 - T 22-04-2016 IPR030390 RNA methyltransferase TrmA, active site TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 PANTHER PTHR11061 5 406 2.1E-129 T 22-04-2016 TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 SUPERFAMILY SSF53335 74 399 6.15E-76 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 Gene3D G3DSA:3.40.50.150 216 400 1.8E-58 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 Gene3D G3DSA:2.40.50.140 14 86 2.5E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 PANTHER PTHR11061:SF30 5 406 2.1E-129 T 22-04-2016 TRD_RS01045 7986e8dc2eca693264221427ecf184e9 406 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 217 394 3.3E-55 T 22-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 Pfam PF00171 Aldehyde dehydrogenase family 19 482 1.2E-186 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 SUPERFAMILY SSF53720 7 486 3.93E-183 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 Gene3D G3DSA:3.40.309.10 268 457 8.4E-75 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 PANTHER PTHR11699 7 493 2.6E-257 T 22-04-2016 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 Gene3D G3DSA:3.40.605.10 9 267 8.7E-106 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 TRD_RS08520 14506be166d347fb9c03e7ce73e75b6a 501 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 TRD_RS01540 ad02af9960eae64a6699fa68f20b181f 137 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 5 115 4.9E-13 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 TRD_RS01540 ad02af9960eae64a6699fa68f20b181f 137 SUPERFAMILY SSF81343 15 131 3.27E-23 T 22-04-2016 TRD_RS01540 ad02af9960eae64a6699fa68f20b181f 137 Gene3D G3DSA:1.20.1300.10 14 123 3.6E-25 T 22-04-2016 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Gene3D G3DSA:3.90.1150.10 322 423 6.4E-40 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Gene3D G3DSA:3.90.1150.10 11 55 6.4E-40 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 275 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 SUPERFAMILY SSF53383 17 422 7.98E-141 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 PANTHER PTHR11986 9 425 8.2E-192 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 PANTHER PTHR11986:SF17 9 425 8.2E-192 T 22-04-2016 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Gene3D G3DSA:3.40.640.10 56 321 1.6E-94 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS06825 0d95cc8c6ede92e2b921a73a7fe64f6d 425 Pfam PF00202 Aminotransferase class-III 21 421 7.1E-134 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 TRD_RS06655 601822f63f71beaba34dfb936318a78e 324 PANTHER PTHR33393:SF2 1 267 2.8E-47 T 22-04-2016 TRD_RS06655 601822f63f71beaba34dfb936318a78e 324 SMART SM00854 5 249 3.2E-72 T 22-04-2016 IPR019079 Capsule synthesis protein, CapA TRD_RS06655 601822f63f71beaba34dfb936318a78e 324 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 6 249 1.5E-65 T 22-04-2016 IPR019079 Capsule synthesis protein, CapA TRD_RS06655 601822f63f71beaba34dfb936318a78e 324 Gene3D G3DSA:3.60.21.30 5 247 7.7E-12 T 22-04-2016 TRD_RS06655 601822f63f71beaba34dfb936318a78e 324 SUPERFAMILY SSF56300 4 302 1.73E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06655 601822f63f71beaba34dfb936318a78e 324 PANTHER PTHR33393 1 267 2.8E-47 T 22-04-2016 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 SUPERFAMILY SSF52009 495 602 1.28E-30 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 PANTHER PTHR22931:SF7 512 600 8.0E-38 T 22-04-2016 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 PANTHER PTHR22931:SF7 107 157 8.0E-38 T 22-04-2016 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 Gene3D G3DSA:3.50.30.10 497 601 1.3E-30 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 Pfam PF00391 PEP-utilising enzyme, mobile domain 527 598 1.5E-23 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 PANTHER PTHR22931 512 600 8.0E-38 T 22-04-2016 TRD_RS07870 0c65bfac91eebe52b5af6c602706cdef 604 PANTHER PTHR22931 107 157 8.0E-38 T 22-04-2016 TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 PANTHER PTHR11993:SF28 1 376 8.4E-195 T 22-04-2016 TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 381 46.342 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 SUPERFAMILY SSF56762 6 381 6.41E-128 T 22-04-2016 IPR029014 NiFe hydrogenase-like TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 110 381 8.8E-113 T 22-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 1 381 1.9E-161 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 Gene3D G3DSA:1.10.645.10 224 370 3.5E-18 T 22-04-2016 IPR029014 NiFe hydrogenase-like TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 Gene3D G3DSA:1.10.645.10 1 221 1.4E-41 T 22-04-2016 IPR029014 NiFe hydrogenase-like TRD_RS08325 699e090aa0204e87a749b2f3fa0e8822 381 PANTHER PTHR11993 1 376 8.4E-195 T 22-04-2016 TRD_RS06770 94da240fc652f20011fb887d24e0e2d6 292 PANTHER PTHR30011 22 232 3.6E-59 T 22-04-2016 TRD_RS06770 94da240fc652f20011fb887d24e0e2d6 292 SUPERFAMILY SSF51679 14 284 2.62E-68 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS06770 94da240fc652f20011fb887d24e0e2d6 292 Pfam PF00296 Luciferase-like monooxygenase 16 232 1.2E-56 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS06770 94da240fc652f20011fb887d24e0e2d6 292 Gene3D G3DSA:3.20.20.30 239 285 3.1E-4 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS06770 94da240fc652f20011fb887d24e0e2d6 292 Gene3D G3DSA:3.20.20.30 9 230 4.3E-68 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 SMART SM00967 12 88 1.9E-21 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 12 87 2.0E-20 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 PANTHER PTHR12029 1 246 1.7E-72 T 22-04-2016 TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 Gene3D G3DSA:3.30.1330.30 10 84 5.9E-21 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 Pfam PF00588 SpoU rRNA Methylase family 101 242 3.7E-35 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 Gene3D G3DSA:3.40.1280.10 99 251 2.6E-47 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 10 246 1.7E-58 T 22-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 SUPERFAMILY SSF75217 76 249 6.28E-46 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases TRD_RS03195 17a982932ac6ffd12cf243ccf94d5b58 261 SUPERFAMILY SSF55315 8 85 2.59E-18 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS13725 f10af480292bd20e2311e6b998e17ff2 114 SUPERFAMILY SSF51735 3 74 9.14E-9 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS13725 f10af480292bd20e2311e6b998e17ff2 114 Gene3D G3DSA:3.40.50.720 14 74 5.9E-9 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 SUPERFAMILY SSF81333 1 66 1.57E-17 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 ProSitePatterns PS00605 ATP synthase c subunit signature. 30 51 - T 22-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 PRINTS PR00124 ATP synthase C subunit signature 23 38 9.3E-19 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 PRINTS PR00124 ATP synthase C subunit signature 40 65 9.3E-19 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 PRINTS PR00124 ATP synthase C subunit signature 2 21 9.3E-19 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 PANTHER PTHR10031 1 68 1.7E-16 T 22-04-2016 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 Pfam PF00137 ATP synthase subunit C 1 64 5.1E-17 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 11 66 5.5E-14 T 22-04-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 Gene3D G3DSA:1.20.20.10 1 66 1.4E-22 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 TRD_RS05760 55f82a8148f6078ab39355803c4cb029 68 Hamap MF_01396 ATP synthase subunit c [atpH]. 1 67 15.46 T 22-04-2016 TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 Gene3D G3DSA:3.10.180.10 164 293 1.9E-23 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 PANTHER PTHR10374 1 179 1.9E-37 T 22-04-2016 TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 Gene3D G3DSA:3.10.180.10 12 142 1.8E-20 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 PANTHER PTHR10374:SF14 1 179 1.9E-37 T 22-04-2016 TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 174 271 1.5E-4 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 SUPERFAMILY SSF54593 6 161 4.16E-31 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 SUPERFAMILY SSF54593 166 294 1.09E-27 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08640 642f5eb5d9e5343ec8289b4ae87a97c6 295 ProSitePatterns PS00934 Glyoxalase I signature 1. 177 198 - T 22-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 TRD_RS06190 d6b55c03a0a938c6afd4e75a6a14332f 214 Gene3D G3DSA:3.50.30.50 3 212 4.2E-64 T 22-04-2016 TRD_RS06190 d6b55c03a0a938c6afd4e75a6a14332f 214 Pfam PF04199 Putative cyclase 7 154 2.1E-33 T 22-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 TRD_RS06190 d6b55c03a0a938c6afd4e75a6a14332f 214 PANTHER PTHR31118 4 211 1.5E-54 T 22-04-2016 TRD_RS06190 d6b55c03a0a938c6afd4e75a6a14332f 214 SUPERFAMILY SSF102198 3 212 3.01E-58 T 22-04-2016 TRD_RS04585 fc70cb13f3e8ec2cceb3bb1d8e1d8ae8 300 Pfam PF08239 Bacterial SH3 domain 240 296 2.0E-12 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS04585 fc70cb13f3e8ec2cceb3bb1d8e1d8ae8 300 SMART SM00287 229 299 7.5E-7 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 Gene3D G3DSA:3.40.50.1220 197 323 3.3E-47 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 PANTHER PTHR10909 111 321 1.9E-33 T 22-04-2016 TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 PANTHER PTHR10909:SF294 111 321 1.9E-33 T 22-04-2016 TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 PIRSF PIRSF000089 4 327 1.3E-88 T 22-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 SUPERFAMILY SSF52467 200 322 2.18E-41 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 SUPERFAMILY SSF52402 6 183 1.74E-35 T 22-04-2016 TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 Gene3D G3DSA:3.40.50.620 5 191 2.2E-38 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 SMART SM00893 6 193 4.7E-20 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 Pfam PF01012 Electron transfer flavoprotein domain 7 174 2.8E-31 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS00205 ebd9ee0a590fb63d6f533da298d29503 330 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 202 285 2.1E-31 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal TRD_RS00600 8238fadbf5d669f5ea49f7f1679ed188 511 SUPERFAMILY SSF46689 439 470 2.37E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 TRD_RS00600 8238fadbf5d669f5ea49f7f1679ed188 511 PANTHER PTHR33744:SF3 4 502 3.5E-53 T 22-04-2016 TRD_RS00600 8238fadbf5d669f5ea49f7f1679ed188 511 Gene3D G3DSA:1.10.10.60 439 470 9.4E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 TRD_RS00600 8238fadbf5d669f5ea49f7f1679ed188 511 Pfam PF07905 Purine catabolism regulatory protein-like family 7 123 1.5E-29 T 22-04-2016 IPR012914 Purine catabolism PurC-like domain TRD_RS00600 8238fadbf5d669f5ea49f7f1679ed188 511 PANTHER PTHR33744 4 502 3.5E-53 T 22-04-2016 TRD_RS00600 8238fadbf5d669f5ea49f7f1679ed188 511 Pfam PF13556 PucR C-terminal helix-turn-helix domain 434 492 8.7E-20 T 22-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain TRD_RS06475 3bfd7557aa4b63417391dbdeabf51a38 122 PANTHER PTHR28259 1 121 1.0E-33 T 22-04-2016 TRD_RS06475 3bfd7557aa4b63417391dbdeabf51a38 122 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 114 3.6E-24 T 22-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 TRD_RS06475 3bfd7557aa4b63417391dbdeabf51a38 122 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 119 18.868 T 22-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 TRD_RS06475 3bfd7557aa4b63417391dbdeabf51a38 122 TIGRFAM TIGR00494 crcB: protein CrcB 6 117 4.7E-28 T 22-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 TRD_RS06075 f0051c2ff27be8c96a69839bc2ecb697 432 Pfam PF08239 Bacterial SH3 domain 157 201 1.4E-7 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS06425 7c3c8fda70cff239c305877f5ec9a652 254 SMART SM00849 35 225 6.7E-8 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS06425 7c3c8fda70cff239c305877f5ec9a652 254 PANTHER PTHR12553:SF7 4 252 6.9E-64 T 22-04-2016 TRD_RS06425 7c3c8fda70cff239c305877f5ec9a652 254 PANTHER PTHR12553 4 252 6.9E-64 T 22-04-2016 TRD_RS06425 7c3c8fda70cff239c305877f5ec9a652 254 Pfam PF12706 Beta-lactamase superfamily domain 46 225 3.9E-35 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS06425 7c3c8fda70cff239c305877f5ec9a652 254 Gene3D G3DSA:3.60.15.10 4 253 3.0E-69 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS06425 7c3c8fda70cff239c305877f5ec9a652 254 SUPERFAMILY SSF56281 4 253 4.85E-45 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS00575 0369f17235f07f7362d8b50b9bec9c1e 394 SUPERFAMILY SSF53850 78 392 8.4E-64 T 22-04-2016 TRD_RS00575 0369f17235f07f7362d8b50b9bec9c1e 394 Gene3D G3DSA:3.40.190.10 78 189 1.1E-13 T 22-04-2016 TRD_RS00575 0369f17235f07f7362d8b50b9bec9c1e 394 Pfam PF13416 Bacterial extracellular solute-binding protein 110 348 1.2E-35 T 22-04-2016 TRD_RS00575 0369f17235f07f7362d8b50b9bec9c1e 394 PANTHER PTHR30222 77 394 2.4E-90 T 22-04-2016 TRD_RS00575 0369f17235f07f7362d8b50b9bec9c1e 394 PANTHER PTHR30222:SF2 77 394 2.4E-90 T 22-04-2016 TRD_RS00575 0369f17235f07f7362d8b50b9bec9c1e 394 Gene3D G3DSA:3.40.190.10 190 335 5.5E-31 T 22-04-2016 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PANTHER PTHR11458 1 335 9.5E-191 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 299 318 1.4E-58 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 154 173 1.4E-58 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 124 138 1.4E-58 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 192 211 1.4E-58 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 244 260 1.4E-58 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 269 284 1.4E-58 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 Gene3D G3DSA:3.20.20.70 8 327 6.0E-153 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 PIRSF PIRSF001415 2 328 1.5E-153 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 SMART SM01004 8 325 1.1E-239 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 9 324 5.1E-153 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 SUPERFAMILY SSF51569 7 326 2.2E-144 T 22-04-2016 TRD_RS05220 8a1c18cb632d0acc5e7b0acd102628b3 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 244 256 - T 22-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 TRD_RS01855 aeccc9f0c44124df726b2493d370e8e3 66 PANTHER PTHR34472:SF1 1 66 2.7E-26 T 22-04-2016 TRD_RS01855 aeccc9f0c44124df726b2493d370e8e3 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 6.9E-24 T 22-04-2016 IPR010035 ThiS, thiamine-biosynthesis TRD_RS01855 aeccc9f0c44124df726b2493d370e8e3 66 Gene3D G3DSA:3.10.20.30 3 66 2.5E-26 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS01855 aeccc9f0c44124df726b2493d370e8e3 66 Pfam PF02597 ThiS family 3 66 3.0E-14 T 22-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 TRD_RS01855 aeccc9f0c44124df726b2493d370e8e3 66 SUPERFAMILY SSF54285 2 65 2.24E-19 T 22-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp TRD_RS01855 aeccc9f0c44124df726b2493d370e8e3 66 PANTHER PTHR34472 1 66 2.7E-26 T 22-04-2016 TRD_RS00610 409f91091b3870f8d24a38ae31c8915f 296 SUPERFAMILY SSF56349 4 272 2.94E-61 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 TRD_RS00610 409f91091b3870f8d24a38ae31c8915f 296 PANTHER PTHR30349 4 293 1.5E-57 T 22-04-2016 TRD_RS00610 409f91091b3870f8d24a38ae31c8915f 296 Gene3D G3DSA:1.10.443.10 78 272 1.9E-42 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS00610 409f91091b3870f8d24a38ae31c8915f 296 PANTHER PTHR30349:SF20 4 293 1.5E-57 T 22-04-2016 TRD_RS00610 409f91091b3870f8d24a38ae31c8915f 296 Pfam PF00589 Phage integrase family 79 264 8.0E-26 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS00610 409f91091b3870f8d24a38ae31c8915f 296 Gene3D G3DSA:1.10.150.130 4 68 6.2E-9 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 SMART SM00843 680 745 9.2E-32 T 22-04-2016 IPR018541 FtsK gamma domain TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 SMART SM00382 427 604 0.0021 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 Gene3D G3DSA:3.40.50.300 366 648 4.2E-76 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 PANTHER PTHR22683:SF41 199 741 4.4E-192 T 22-04-2016 TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 SUPERFAMILY SSF52540 366 656 2.24E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 SUPERFAMILY SSF46785 681 743 5.44E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 Pfam PF01580 FtsK/SpoIIIE family 392 529 6.1E-40 T 22-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 PANTHER PTHR22683 199 741 4.4E-192 T 22-04-2016 TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 Pfam PF09397 Ftsk gamma domain 683 741 1.7E-25 T 22-04-2016 IPR018541 FtsK gamma domain TRD_RS00995 59465ca220069f50612bdb5a588771e7 745 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 76 190 3.7E-9 T 22-04-2016 IPR025199 DNA translocase FtsK, 4TM region TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 Pfam PF07690 Major Facilitator Superfamily 48 249 8.5E-17 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 Pfam PF07690 Major Facilitator Superfamily 256 402 3.5E-8 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 SUPERFAMILY SSF103473 7 402 7.46E-38 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 PANTHER PTHR23518:SF1 1 413 4.2E-133 T 22-04-2016 TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 PANTHER PTHR23518 1 413 4.2E-133 T 22-04-2016 TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 Gene3D G3DSA:1.20.1250.20 14 207 6.4E-18 T 22-04-2016 TRD_RS02620 9f06539a55a4d779f148468e7b1cf640 413 Gene3D G3DSA:1.20.1250.20 238 398 1.3E-11 T 22-04-2016 TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 199 282 4.3E-33 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 Gene3D G3DSA:3.40.50.620 4 189 3.6E-37 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 PANTHER PTHR10909:SF309 108 318 4.9E-46 T 22-04-2016 TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 Gene3D G3DSA:3.40.50.1220 195 320 6.1E-51 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 SUPERFAMILY SSF52467 199 319 6.29E-44 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 SUPERFAMILY SSF52402 5 189 2.3E-35 T 22-04-2016 TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 SMART SM00893 5 188 3.9E-21 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 PANTHER PTHR10909 108 318 4.9E-46 T 22-04-2016 TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 PIRSF PIRSF000089 1 321 8.0E-89 T 22-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 TRD_RS00715 3faed46459e402d5ba7acbbf71c2de74 321 Pfam PF01012 Electron transfer flavoprotein domain 7 178 1.9E-31 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 Gene3D G3DSA:3.100.10.10 32 145 2.2E-33 T 22-04-2016 TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 145 20.369 T 22-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 PANTHER PTHR12934 1 145 1.5E-64 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 SUPERFAMILY SSF52080 4 145 4.84E-43 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 143 6.8E-32 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 22-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04435 0ccfc56fbb9dca4eeb9385ed6f9a325c 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 5.6E-46 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 TRD_RS06730 5eefdc75a8017da8324052c82966b440 158 SUPERFAMILY SSF49764 12 148 2.09E-32 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS06730 5eefdc75a8017da8324052c82966b440 158 PANTHER PTHR11527:SF122 5 154 3.6E-31 T 22-04-2016 TRD_RS06730 5eefdc75a8017da8324052c82966b440 158 PANTHER PTHR11527 5 154 3.6E-31 T 22-04-2016 IPR031107 Small heat shock protein HSP20 TRD_RS06730 5eefdc75a8017da8324052c82966b440 158 Pfam PF00011 Hsp20/alpha crystallin family 48 148 8.4E-18 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain TRD_RS06730 5eefdc75a8017da8324052c82966b440 158 Gene3D G3DSA:2.60.40.790 2 148 1.9E-37 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 249 4.2E-48 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 PANTHER PTHR21581 5 268 2.5E-62 T 22-04-2016 TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 PANTHER PTHR21581:SF1 5 268 2.5E-62 T 22-04-2016 TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 106 123 6.7E-10 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 6.7E-10 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 SUPERFAMILY SSF56601 5 269 2.11E-62 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS13490 674ac4e6f3c6675d386ae3dac34681c0 549 Gene3D G3DSA:3.40.710.10 25 270 3.5E-83 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 PANTHER PTHR30290 5 556 4.4E-102 T 22-04-2016 TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 SUPERFAMILY SSF53850 72 555 1.52E-110 T 22-04-2016 TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 Gene3D G3DSA:3.10.105.10 342 525 1.8E-30 T 22-04-2016 TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 119 479 1.9E-71 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 PIRSF PIRSF002741 24 551 1.2E-75 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 Gene3D G3DSA:3.40.190.10 227 341 2.5E-25 T 22-04-2016 TRD_RS07120 f0975dc072e41b693d5d2073378abc1c 557 Gene3D G3DSA:3.90.76.10 86 226 9.9E-34 T 22-04-2016 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 PANTHER PTHR30454 1 365 1.4E-175 T 22-04-2016 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 3 363 34.316 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 PIRSF PIRSF004640 1 369 9.0E-143 T 22-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 5 355 2.4E-125 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 Pfam PF04551 GcpE protein 8 359 6.0E-133 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 Gene3D G3DSA:3.20.20.70 166 211 1.3E-5 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 Gene3D G3DSA:3.20.20.70 30 132 1.3E-5 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 SUPERFAMILY SSF51717 13 214 2.12E-8 T 22-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 TRD_RS04885 58b339552a4c559370e35c26ee3876a7 383 SUPERFAMILY SSF56014 272 367 4.97E-13 T 22-04-2016 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 Pfam PF01416 tRNA pseudouridine synthase 12 96 5.8E-7 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 Pfam PF01416 tRNA pseudouridine synthase 145 261 4.4E-24 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 4 260 32.906 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 PIRSF PIRSF001430 3 277 2.0E-73 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 Gene3D G3DSA:3.30.70.660 109 258 4.2E-41 T 22-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 SUPERFAMILY SSF55120 4 266 7.34E-78 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 PANTHER PTHR11142 3 262 7.0E-85 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 Gene3D G3DSA:3.30.70.580 3 105 1.0E-33 T 22-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS04380 6a8a308a0f488d743ed40bc841539651 279 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 8 255 1.3E-51 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 Gene3D G3DSA:3.30.450.40 221 368 3.2E-13 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 SUPERFAMILY SSF109604 22 197 7.85E-43 T 22-04-2016 TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 TIGRFAM TIGR00277 HDIG: HDIG domain 35 127 6.3E-9 T 22-04-2016 IPR006675 HDIG domain TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 SUPERFAMILY SSF55781 220 367 1.4E-14 T 22-04-2016 IPR029016 GAF domain-like TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 Pfam PF01966 HD domain 37 159 4.1E-24 T 22-04-2016 IPR006674 HD domain TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 Gene3D G3DSA:1.10.3210.10 24 198 2.2E-27 T 22-04-2016 IPR006674 HD domain TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 SMART SM00471 33 168 7.6E-16 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS13560 ca23c3d74ccabf57627c40ba67c77d29 431 Pfam PF13185 GAF domain 240 368 1.3E-10 T 22-04-2016 IPR003018 GAF domain GO:0005515 TRD_RS05655 3b3c78aab3134e9001b3975c92b3840d 262 Gene3D G3DSA:3.50.50.60 87 130 6.2E-6 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05655 3b3c78aab3134e9001b3975c92b3840d 262 SUPERFAMILY SSF51905 75 151 8.39E-6 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05655 3b3c78aab3134e9001b3975c92b3840d 262 PANTHER PTHR30388:SF4 1 253 1.0E-72 T 22-04-2016 TRD_RS05655 3b3c78aab3134e9001b3975c92b3840d 262 PANTHER PTHR30388 1 253 1.0E-72 T 22-04-2016 TRD_RS05655 3b3c78aab3134e9001b3975c92b3840d 262 Pfam PF13478 XdhC Rossmann domain 94 236 2.6E-45 T 22-04-2016 IPR027051 XdhC Rossmann domain TRD_RS05655 3b3c78aab3134e9001b3975c92b3840d 262 Pfam PF02625 XdhC and CoxI family 13 73 1.0E-12 T 22-04-2016 IPR003777 XdhC- CoxI TRD_RS05455 e2f11be0c743fc54a93f5d55accbdc0d 188 PANTHER PTHR35368 1 174 5.3E-41 T 22-04-2016 TRD_RS05455 e2f11be0c743fc54a93f5d55accbdc0d 188 SUPERFAMILY SSF82784 12 171 2.49E-47 T 22-04-2016 IPR003718 OsmC/Ohr family TRD_RS05455 e2f11be0c743fc54a93f5d55accbdc0d 188 Pfam PF02566 OsmC-like protein 64 168 2.8E-26 T 22-04-2016 IPR003718 OsmC/Ohr family TRD_RS05455 e2f11be0c743fc54a93f5d55accbdc0d 188 Gene3D G3DSA:3.30.300.20 9 161 8.8E-49 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta TRD_RS05455 e2f11be0c743fc54a93f5d55accbdc0d 188 PANTHER PTHR35368:SF1 1 174 5.3E-41 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 PANTHER PTHR24031 409 712 1.5E-122 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 PANTHER PTHR24031 735 781 1.5E-122 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 PANTHER PTHR24031 278 392 1.5E-122 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:2.40.50.140 173 256 1.3E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 SUPERFAMILY SSF52540 296 563 1.14E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 SUPERFAMILY SSF52540 562 760 1.81E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Pfam PF00270 DEAD/DEAH box helicase 382 541 8.5E-15 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:3.40.50.300 564 747 4.5E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Pfam PF00271 Helicase conserved C-terminal domain 582 698 2.3E-19 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 PANTHER PTHR24031:SF249 409 712 1.5E-122 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 PANTHER PTHR24031:SF249 735 781 1.5E-122 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 PANTHER PTHR24031:SF249 278 392 1.5E-122 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:1.10.150.20 112 149 1.8E-5 T 22-04-2016 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Gene3D G3DSA:3.40.50.300 362 563 2.2E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 SUPERFAMILY SSF50249 118 291 7.2E-37 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 140 772 1.2E-216 T 22-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 Pfam PF17191 RecG wedge domain 126 286 3.3E-22 T 22-04-2016 IPR033454 RecG, wedge domain TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 SMART SM00487 375 569 1.2E-32 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS00400 ee290a319cb6491c6b638498421eef67 807 SMART SM00490 615 699 2.5E-20 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 SUPERFAMILY SSF53448 266 551 2.12E-59 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 PANTHER PTHR22916:SF9 275 414 9.0E-67 T 22-04-2016 TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 PANTHER PTHR22916:SF9 440 586 9.0E-67 T 22-04-2016 TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 Pfam PF00535 Glycosyl transferase family 2 11 131 1.6E-15 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 Pfam PF00535 Glycosyl transferase family 2 277 463 2.3E-25 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 Gene3D G3DSA:3.90.550.10 9 103 1.3E-12 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 Gene3D G3DSA:3.90.550.10 276 513 1.7E-54 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 SUPERFAMILY SSF53448 8 147 5.28E-22 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 PANTHER PTHR22916 275 414 9.0E-67 T 22-04-2016 TRD_RS13675 024d3dd90947b7831f37a1faf340db63 592 PANTHER PTHR22916 440 586 9.0E-67 T 22-04-2016 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 Pfam PF01479 S4 domain 4 47 1.5E-11 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 Gene3D G3DSA:3.10.290.10 3 66 1.3E-24 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 SUPERFAMILY SSF55174 3 70 3.53E-14 T 22-04-2016 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 69 226 2.9E-48 T 22-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 101 115 - T 22-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 SUPERFAMILY SSF55120 50 240 4.32E-46 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 Pfam PF00849 RNA pseudouridylate synthase 65 195 1.3E-16 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 PANTHER PTHR21600 3 237 1.6E-79 T 22-04-2016 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 PANTHER PTHR21600:SF2 3 237 1.6E-79 T 22-04-2016 TRD_RS02015 503c8c6653b86b0cc5e5c4a5e4a84d97 278 SMART SM00363 4 66 9.8E-12 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 Gene3D G3DSA:3.40.50.720 5 141 8.7E-68 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 8 115 1.1E-12 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 PANTHER PTHR41706 2 307 4.7E-143 T 22-04-2016 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 129 275 1.5E-60 T 22-04-2016 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 SUPERFAMILY SSF51735 6 153 1.97E-30 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 7 300 1.6E-137 T 22-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 308 134.69 T 22-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 PIRSF PIRSF015689 3 306 4.3E-127 T 22-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 SMART SM00859 8 121 9.3E-12 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 Gene3D G3DSA:3.30.360.10 142 275 3.7E-63 T 22-04-2016 TRD_RS06545 556981ec119106e197b58c3745dfb38f 308 SUPERFAMILY SSF55347 129 275 4.84E-59 T 22-04-2016 TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 PANTHER PTHR10795 1 298 7.5E-71 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 PANTHER PTHR10795 315 408 7.5E-71 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 175 185 - T 22-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 353 363 - T 22-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 141 152 - T 22-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 SUPERFAMILY SSF52743 23 391 2.75E-73 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF07705 CARDB 430 511 4.6E-11 T 22-04-2016 IPR011635 CARDB domain TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF07705 CARDB 535 627 1.4E-6 T 22-04-2016 IPR011635 CARDB domain TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:2.60.40.360 442 530 2.5E-4 T 22-04-2016 IPR008962 PapD-like TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF05922 Peptidase inhibitor I9 34 108 5.2E-6 T 22-04-2016 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Pfam PF00082 Subtilase family 141 387 4.8E-47 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:3.30.70.80 28 112 1.6E-7 T 22-04-2016 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 Gene3D G3DSA:3.40.50.200 139 390 9.3E-77 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 352 368 1.3E-17 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 136 155 1.3E-17 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS13710 e399fb5b4b90072a2756d42fc61b3193 642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 171 184 1.3E-17 T 22-04-2016 IPR015500 Peptidase S8, subtilisin-related TRD_RS03010 6ad6610cff146df56d46c2866ac64749 365 SUPERFAMILY SSF53756 14 361 2.48E-75 T 22-04-2016 TRD_RS03010 6ad6610cff146df56d46c2866ac64749 365 PANTHER PTHR12526 14 365 1.0E-65 T 22-04-2016 TRD_RS03010 6ad6610cff146df56d46c2866ac64749 365 Pfam PF00534 Glycosyl transferases group 1 188 339 4.8E-31 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS03010 6ad6610cff146df56d46c2866ac64749 365 Pfam PF13439 Glycosyltransferase Family 4 57 167 1.7E-13 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS03010 6ad6610cff146df56d46c2866ac64749 365 Gene3D G3DSA:3.40.50.2000 149 339 9.2E-30 T 22-04-2016 TRD_RS07595 bda212f50ca35854ec4f39be93a6a573 69 PANTHER PTHR35534 3 62 4.4E-13 T 22-04-2016 TRD_RS07595 bda212f50ca35854ec4f39be93a6a573 69 Pfam PF01783 Ribosomal L32p protein family 3 57 5.4E-19 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 TRD_RS07595 bda212f50ca35854ec4f39be93a6a573 69 SUPERFAMILY SSF57829 3 56 3.54E-19 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 TRD_RS07595 bda212f50ca35854ec4f39be93a6a573 69 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 3 56 4.6E-18 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 TRD_RS07595 bda212f50ca35854ec4f39be93a6a573 69 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 56 15.199 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 TRD_RS04575 6f7a85254af79f05bd2eb83da3e099f8 186 PANTHER PTHR35024 69 182 1.3E-26 T 22-04-2016 TRD_RS04575 6f7a85254af79f05bd2eb83da3e099f8 186 PANTHER PTHR35024:SF2 69 182 1.3E-26 T 22-04-2016 TRD_RS04575 6f7a85254af79f05bd2eb83da3e099f8 186 Pfam PF04519 Polymer-forming cytoskeletal 72 168 1.2E-24 T 22-04-2016 IPR007607 Protein of unknown function DUF583 TRD_RS07170 86b04e27a3269b4a82c80513dd9988c4 157 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 65 153 7.2E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS07170 86b04e27a3269b4a82c80513dd9988c4 157 SUPERFAMILY SSF46626 13 157 1.43E-15 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS07170 86b04e27a3269b4a82c80513dd9988c4 157 Gene3D G3DSA:1.10.760.10 6 156 2.4E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS03890 b6ae82e464ca60a305d31ef9f6872260 344 Pfam PF06144 DNA polymerase III, delta subunit 21 154 2.0E-6 T 22-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 TRD_RS03890 b6ae82e464ca60a305d31ef9f6872260 344 SUPERFAMILY SSF48019 217 329 2.89E-8 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 TRD_RS03890 b6ae82e464ca60a305d31ef9f6872260 344 Gene3D G3DSA:1.20.272.10 225 271 7.9E-5 T 22-04-2016 TRD_RS03890 b6ae82e464ca60a305d31ef9f6872260 344 Gene3D G3DSA:1.10.8.60 125 224 2.8E-8 T 22-04-2016 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 SUPERFAMILY SSF56300 1 242 2.43E-61 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PIRSF PIRSF000883 1 243 1.8E-60 T 22-04-2016 IPR011152 Phosphoesterase MJ0912 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 Gene3D G3DSA:3.60.21.10 1 242 3.4E-82 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PANTHER PTHR11124 1 71 1.6E-53 T 22-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PANTHER PTHR11124 180 242 1.6E-53 T 22-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PANTHER PTHR11124 97 158 1.6E-53 T 22-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 200 7.3E-28 T 22-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PANTHER PTHR11124:SF2 1 71 1.6E-53 T 22-04-2016 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PANTHER PTHR11124:SF2 180 242 1.6E-53 T 22-04-2016 TRD_RS06920 5dd09d1e52301296109983b3f42899c3 243 PANTHER PTHR11124:SF2 97 158 1.6E-53 T 22-04-2016 TRD_RS00030 698986d06ab65e0f836035bb5eac18d7 341 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 313 1.3E-81 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS00030 698986d06ab65e0f836035bb5eac18d7 341 Gene3D G3DSA:3.40.50.1100 80 326 9.3E-69 T 22-04-2016 TRD_RS00030 698986d06ab65e0f836035bb5eac18d7 341 PANTHER PTHR10314 14 322 3.5E-108 T 22-04-2016 TRD_RS00030 698986d06ab65e0f836035bb5eac18d7 341 PANTHER PTHR10314:SF17 14 322 3.5E-108 T 22-04-2016 TRD_RS00030 698986d06ab65e0f836035bb5eac18d7 341 SUPERFAMILY SSF53686 12 317 5.76E-97 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS05660 e765868350f0cc4aeb988fef76cae7a3 202 Gene3D G3DSA:3.90.550.10 1 199 3.3E-40 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05660 e765868350f0cc4aeb988fef76cae7a3 202 SUPERFAMILY SSF53448 3 188 5.2E-34 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05660 e765868350f0cc4aeb988fef76cae7a3 202 PANTHER PTHR19136 1 196 3.2E-38 T 22-04-2016 TRD_RS05660 e765868350f0cc4aeb988fef76cae7a3 202 Pfam PF12804 MobA-like NTP transferase domain 6 166 4.2E-40 T 22-04-2016 IPR025877 MobA-like NTP transferase TRD_RS05660 e765868350f0cc4aeb988fef76cae7a3 202 PANTHER PTHR19136:SF78 1 196 3.2E-38 T 22-04-2016 TRD_RS08565 5d166885865cd5f135b6244f012b5c50 124 Gene3D G3DSA:3.40.50.2300 7 118 3.3E-7 T 22-04-2016 TRD_RS08565 5d166885865cd5f135b6244f012b5c50 124 SUPERFAMILY SSF52172 7 117 3.95E-10 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 Pfam PF02934 GatB/GatE catalytic domain 9 292 1.4E-109 T 22-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 6 482 3.8E-172 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 PANTHER PTHR11659:SF0 6 487 3.1E-239 T 22-04-2016 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 PANTHER PTHR11659 6 487 3.1E-239 T 22-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 6 483 37.516 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 150 164 - T 22-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 SUPERFAMILY SSF89095 303 410 1.12E-24 T 22-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 Pfam PF02637 GatB domain 334 482 3.4E-42 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 Gene3D G3DSA:1.10.10.410 424 483 9.9E-4 T 22-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 SMART SM00845 334 482 7.4E-59 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 TRD_RS06890 9299701df07596cbfc2905cbfc5b5fae 487 SUPERFAMILY SSF55931 8 302 6.54E-114 T 22-04-2016 TRD_RS04150 344e159d770f040ecc01a2a4c03558a2 243 Gene3D G3DSA:3.40.50.10320 5 237 2.1E-49 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS04150 344e159d770f040ecc01a2a4c03558a2 243 Pfam PF02585 GlcNAc-PI de-N-acetylase 8 136 1.2E-19 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS04150 344e159d770f040ecc01a2a4c03558a2 243 SUPERFAMILY SSF102588 5 239 1.7E-49 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS04150 344e159d770f040ecc01a2a4c03558a2 243 PANTHER PTHR12993 6 230 7.5E-33 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS04150 344e159d770f040ecc01a2a4c03558a2 243 PANTHER PTHR12993:SF11 6 230 7.5E-33 T 22-04-2016 TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 SUPERFAMILY SSF56176 328 416 2.73E-21 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 Pfam PF03471 Transporter associated domain 332 407 7.5E-22 T 22-04-2016 IPR005170 Transporter-associated domain TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 SMART SM01091 330 408 5.3E-26 T 22-04-2016 IPR005170 Transporter-associated domain TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 PANTHER PTHR22777 178 418 9.4E-91 T 22-04-2016 TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 SMART SM00116 204 253 2.7E-6 T 22-04-2016 IPR000644 CBS domain TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 SMART SM00116 267 315 2.4 T 22-04-2016 IPR000644 CBS domain TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 Gene3D G3DSA:3.10.580.10 182 309 2.7E-27 T 22-04-2016 TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 Gene3D G3DSA:3.30.465.10 310 407 8.0E-27 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 Pfam PF00571 CBS domain 196 253 1.1E-7 T 22-04-2016 IPR000644 CBS domain TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 Pfam PF00571 CBS domain 261 315 2.7E-6 T 22-04-2016 IPR000644 CBS domain TRD_RS13385 8edd34336463ff7b4ac1fdb577395105 420 SUPERFAMILY SSF54631 190 331 8.72E-39 T 22-04-2016 TRD_RS04710 d3de0d8a4ba221d36ea4d90431096f93 149 PANTHER PTHR11527:SF118 10 134 1.2E-21 T 22-04-2016 TRD_RS04710 d3de0d8a4ba221d36ea4d90431096f93 149 PANTHER PTHR11527 10 134 1.2E-21 T 22-04-2016 IPR031107 Small heat shock protein HSP20 TRD_RS04710 d3de0d8a4ba221d36ea4d90431096f93 149 Pfam PF00011 Hsp20/alpha crystallin family 47 138 1.7E-13 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain TRD_RS04710 d3de0d8a4ba221d36ea4d90431096f93 149 Gene3D G3DSA:2.60.40.790 3 137 7.2E-25 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS04710 d3de0d8a4ba221d36ea4d90431096f93 149 SUPERFAMILY SSF49764 19 139 1.88E-26 T 22-04-2016 IPR008978 HSP20-like chaperone TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 Pfam PF00196 Bacterial regulatory proteins, luxR family 169 224 6.7E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 PANTHER PTHR26402:SF151 12 238 1.1E-34 T 22-04-2016 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 Gene3D G3DSA:1.10.10.10 138 231 3.8E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 Gene3D G3DSA:3.40.50.2300 14 137 5.8E-10 T 22-04-2016 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 SUPERFAMILY SSF46894 164 230 1.56E-19 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 SMART SM00421 167 224 6.1E-22 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 PANTHER PTHR26402 12 238 1.1E-34 T 22-04-2016 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 SUPERFAMILY SSF52172 13 147 6.4E-8 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 212 9.4E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 200 9.4E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS08210 495a2867df0ca6edfeb6c2e114bd14da 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 184 9.4E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS02215 00010d8a041f801fc501cfa5a3f17e01 165 Pfam PF05425 Copper resistance protein D 50 154 1.4E-13 T 22-04-2016 IPR008457 Copper resistance protein D GO:0016021 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 PIRSF PIRSF002144 1 94 1.8E-31 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 6.3E-24 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 6.3E-24 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 6.3E-24 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 Pfam PF00203 Ribosomal protein S19 3 83 9.8E-35 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.122 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 90 3.2E-41 T 22-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 Gene3D G3DSA:3.30.860.10 1 92 5.7E-39 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 PANTHER PTHR11880 1 86 4.8E-47 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 SUPERFAMILY SSF54570 3 85 6.67E-34 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 TRD_RS04505 6648051a64988ed24cfac30ae9a74061 94 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 22-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 SMART SM00943 12 174 4.5E-4 T 22-04-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 SUPERFAMILY SSF56747 9 154 1.44E-13 T 22-04-2016 TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 Pfam PF13481 AAA domain 285 444 1.0E-20 T 22-04-2016 TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 Gene3D G3DSA:3.40.50.300 287 517 9.7E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 Gene3D G3DSA:1.10.10.10 526 578 1.2E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 SUPERFAMILY SSF52540 297 512 1.3E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 SUPERFAMILY SSF46785 528 588 6.83E-7 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 SMART SM00942 191 256 3.2E-10 T 22-04-2016 IPR014820 Primase, C-terminal 1 TRD_RS02540 027bc8a454bd61d1d35f0ba664b724bb 781 Pfam PF08708 Primase C terminal 1 (PriCT-1) 195 254 4.3E-9 T 22-04-2016 IPR014820 Primase, C-terminal 1 TRD_RS07510 8947fee2604aad8bbd0597b0fed4dda1 240 PANTHER PTHR10859 9 235 2.5E-102 T 22-04-2016 TRD_RS07510 8947fee2604aad8bbd0597b0fed4dda1 240 PANTHER PTHR10859:SF74 9 235 2.5E-102 T 22-04-2016 TRD_RS07510 8947fee2604aad8bbd0597b0fed4dda1 240 Gene3D G3DSA:3.90.550.10 9 205 1.6E-30 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS07510 8947fee2604aad8bbd0597b0fed4dda1 240 Pfam PF00535 Glycosyl transferase family 2 11 132 1.4E-32 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS07510 8947fee2604aad8bbd0597b0fed4dda1 240 SUPERFAMILY SSF53448 9 231 5.63E-49 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS01135 4b79e092b0242974775641a939432e68 151 SUPERFAMILY SSF51182 2 147 5.28E-42 T 22-04-2016 IPR011051 RmlC-like cupin domain TRD_RS01135 4b79e092b0242974775641a939432e68 151 PANTHER PTHR21047:SF4 2 149 5.6E-48 T 22-04-2016 TRD_RS01135 4b79e092b0242974775641a939432e68 151 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 2 147 2.0E-17 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 TRD_RS01135 4b79e092b0242974775641a939432e68 151 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 2 146 1.8E-17 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 TRD_RS01135 4b79e092b0242974775641a939432e68 151 PANTHER PTHR21047 2 149 5.6E-48 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 TRD_RS01135 4b79e092b0242974775641a939432e68 151 Gene3D G3DSA:2.60.120.10 2 149 2.1E-30 T 22-04-2016 IPR014710 RmlC-like jelly roll fold TRD_RS01030 33ce84d3825db1216e198652f8742808 383 SMART SM01097 7 137 1.3E-80 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 Gene3D G3DSA:3.50.30.20 10 142 6.7E-56 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 Gene3D G3DSA:3.40.50.880 181 367 4.0E-64 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS01030 33ce84d3825db1216e198652f8742808 383 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 10 136 5.1E-51 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00096 Glutamine amidotransferase superfamily signature 339 352 2.9E-12 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00096 Glutamine amidotransferase superfamily signature 252 263 2.9E-12 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00096 Glutamine amidotransferase superfamily signature 224 233 2.9E-12 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 7 368 44.874 T 22-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PANTHER PTHR11405 7 366 3.8E-183 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 SUPERFAMILY SSF52021 10 146 6.93E-53 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 269 286 3.6E-35 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 221 235 3.6E-35 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 294 305 3.6E-35 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 252 268 3.6E-35 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 182 196 3.6E-35 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00097 Anthranilate synthase component II signature 224 233 8.7E-9 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00097 Anthranilate synthase component II signature 339 352 8.7E-9 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 PRINTS PR00097 Anthranilate synthase component II signature 252 263 8.7E-9 T 22-04-2016 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 SUPERFAMILY SSF52317 170 367 4.09E-57 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS01030 33ce84d3825db1216e198652f8742808 383 Pfam PF00117 Glutamine amidotransferase class-I 183 362 1.3E-44 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 TRD_RS01030 33ce84d3825db1216e198652f8742808 383 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 10 365 1.1E-133 T 22-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 TRD_RS13460 229d383b7186caa47e0b1a73cdec7748 562 SUPERFAMILY SSF103647 482 540 1.7E-5 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 TRD_RS13460 229d383b7186caa47e0b1a73cdec7748 562 Gene3D G3DSA:4.10.1080.10 483 540 6.0E-8 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 TRD_RS08945 6279cf93d14c158ecf5958be4f304b07 185 SUPERFAMILY SSF54593 46 178 1.75E-18 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08945 6279cf93d14c158ecf5958be4f304b07 185 Gene3D G3DSA:3.10.180.10 47 177 3.4E-14 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08945 6279cf93d14c158ecf5958be4f304b07 185 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 46 76 1.4E-5 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS08945 6279cf93d14c158ecf5958be4f304b07 185 ProSitePatterns PS00934 Glyoxalase I signature 1. 48 69 - T 22-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 TRD_RS06620 1e821e4527718dc38eb4dcc0aa6fd1f6 328 PANTHER PTHR23409 15 321 5.0E-74 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 TRD_RS06620 1e821e4527718dc38eb4dcc0aa6fd1f6 328 Gene3D G3DSA:1.10.620.20 4 301 1.7E-82 T 22-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 TRD_RS06620 1e821e4527718dc38eb4dcc0aa6fd1f6 328 PIRSF PIRSF000355 1 328 4.8E-94 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 TRD_RS06620 1e821e4527718dc38eb4dcc0aa6fd1f6 328 SUPERFAMILY SSF47240 4 325 8.12E-80 T 22-04-2016 IPR009078 Ferritin-like superfamily TRD_RS06620 1e821e4527718dc38eb4dcc0aa6fd1f6 328 Pfam PF00268 Ribonucleotide reductase, small chain 14 297 3.8E-67 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 TRD_RS06620 1e821e4527718dc38eb4dcc0aa6fd1f6 328 PANTHER PTHR23409:SF18 15 321 5.0E-74 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 1.0E-76 T 22-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.7E-35 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 164 177 1.7E-35 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.7E-35 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.7E-35 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.7E-35 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.7E-35 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 Pfam PF00117 Glutamine amidotransferase class-I 3 187 2.8E-52 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PANTHER PTHR11922:SF7 1 194 3.9E-95 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.7E-6 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.7E-6 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 SUPERFAMILY SSF52317 1 189 1.16E-56 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 Gene3D G3DSA:3.40.50.880 1 188 1.0E-67 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 4.3E-13 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.3E-13 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.3E-13 T 22-04-2016 TRD_RS00495 3ab390f28d33db1ade0ca8d19479725c 203 PANTHER PTHR11922 1 194 3.9E-95 T 22-04-2016 TRD_RS06725 1586563b75322522578d3392b21726f7 408 Pfam PF07690 Major Facilitator Superfamily 15 351 1.2E-37 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS06725 1586563b75322522578d3392b21726f7 408 Gene3D G3DSA:1.20.1250.20 214 394 3.7E-28 T 22-04-2016 TRD_RS06725 1586563b75322522578d3392b21726f7 408 Gene3D G3DSA:1.20.1250.20 9 186 3.8E-25 T 22-04-2016 TRD_RS06725 1586563b75322522578d3392b21726f7 408 SUPERFAMILY SSF103473 8 394 9.55E-58 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS06725 1586563b75322522578d3392b21726f7 408 PRINTS PR01035 Tetracycline resistance protein signature 17 33 3.2E-7 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 TRD_RS06725 1586563b75322522578d3392b21726f7 408 PRINTS PR01035 Tetracycline resistance protein signature 133 155 3.2E-7 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 TRD_RS06725 1586563b75322522578d3392b21726f7 408 PRINTS PR01035 Tetracycline resistance protein signature 240 260 3.2E-7 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 TRD_RS06725 1586563b75322522578d3392b21726f7 408 PANTHER PTHR23517 8 406 4.4E-30 T 22-04-2016 TRD_RS06725 1586563b75322522578d3392b21726f7 408 ProSitePatterns PS00216 Sugar transport proteins signature 1. 265 281 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 Gene3D G3DSA:3.90.870.10 3 214 5.1E-94 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 PANTHER PTHR21327 2 409 5.8E-227 T 22-04-2016 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 SUPERFAMILY SSF55821 3 205 6.87E-83 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 2 206 39.561 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 Pfam PF00925 GTP cyclohydrolase II 211 376 6.7E-72 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 201 7.3E-84 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 PIRSF PIRSF001259 2 409 5.2E-170 T 22-04-2016 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 PANTHER PTHR21327:SF6 2 409 5.8E-227 T 22-04-2016 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 207 402 42.842 T 22-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 211 400 2.9E-78 T 22-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 202 1.3E-76 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 3 398 52.03 T 22-04-2016 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275|UniPathway: UPA00275 TRD_RS02325 0a5816e88f71ae9055192b2933f0627f 417 SUPERFAMILY SSF142695 210 378 1.57E-69 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 Gene3D G3DSA:3.40.50.1770 200 357 4.3E-24 T 22-04-2016 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 Gene3D G3DSA:3.40.50.1770 2 176 1.4E-59 T 22-04-2016 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 22-04-2016 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 PIRSF PIRSF000183 1 370 1.4E-167 T 22-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 SMART SM01002 149 297 6.1E-85 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 PANTHER PTHR10160 1 370 1.3E-193 T 22-04-2016 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 5.1E-46 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 1.2E-82 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 Gene3D G3DSA:3.90.180.10 177 199 6.7E-5 T 22-04-2016 IPR011032 GroES-like TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 SMART SM01003 4 137 1.4E-74 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 SUPERFAMILY SSF51735 137 303 1.6E-50 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 2 368 3.4E-165 T 22-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 SUPERFAMILY SSF52283 305 360 9.35E-65 T 22-04-2016 TRD_RS04875 ca65286eddd3e77935369d4b753af2fb 370 SUPERFAMILY SSF52283 2 137 9.35E-65 T 22-04-2016 TRD_RS07130 6a9b50c0e3aed1379246d07a9156de95 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 1.8E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07130 6a9b50c0e3aed1379246d07a9156de95 299 PANTHER PTHR30465 13 296 3.5E-101 T 22-04-2016 TRD_RS07130 6a9b50c0e3aed1379246d07a9156de95 299 PANTHER PTHR30465:SF10 13 296 3.5E-101 T 22-04-2016 TRD_RS07130 6a9b50c0e3aed1379246d07a9156de95 299 SUPERFAMILY SSF161098 91 276 1.31E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07130 6a9b50c0e3aed1379246d07a9156de95 299 Gene3D G3DSA:1.10.3720.10 87 292 1.0E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 336 526 1.6E-45 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 PANTHER PTHR32089 529 563 6.5E-54 T 22-04-2016 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 PANTHER PTHR32089 212 244 6.5E-54 T 22-04-2016 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 PANTHER PTHR32089 280 507 6.5E-54 T 22-04-2016 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 Pfam PF11563 Protoglobin 21 182 4.1E-25 T 22-04-2016 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 Gene3D G3DSA:1.10.287.950 293 508 8.0E-48 T 22-04-2016 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 SUPERFAMILY SSF58104 284 550 9.81E-55 T 22-04-2016 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 SUPERFAMILY SSF46458 10 178 1.14E-24 T 22-04-2016 IPR009050 Globin-like TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 SMART SM00283 278 560 1.4E-51 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS13400 12976fba9c51ff73c0cde93cf4c3f8b4 642 Gene3D G3DSA:1.10.490.10 10 179 1.5E-40 T 22-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 TRD_RS01110 1105d3752255eaad40d4301abc9e7bc3 116 SUPERFAMILY SSF52540 1 110 2.07E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01110 1105d3752255eaad40d4301abc9e7bc3 116 Gene3D G3DSA:3.40.50.300 37 110 1.3E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01110 1105d3752255eaad40d4301abc9e7bc3 116 Gene3D G3DSA:3.40.50.300 1 33 3.0E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS11095 9b7439d195ef7b6a2eadff826f2ed019 129 SUPERFAMILY SSF103647 67 124 5.1E-7 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 TRD_RS11095 9b7439d195ef7b6a2eadff826f2ed019 129 Gene3D G3DSA:4.10.1080.10 69 124 2.3E-7 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 SUPERFAMILY SSF46589 28 112 3.77E-18 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 Pfam PF01409 tRNA synthetases class II core domain (F) 105 354 2.3E-99 T 22-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 33 100 3.2E-21 T 22-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 51 354 1.9E-93 T 22-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 PANTHER PTHR11538 54 65 8.8E-89 T 22-04-2016 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 PANTHER PTHR11538 103 354 8.8E-89 T 22-04-2016 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 Gene3D G3DSA:3.30.930.10 22 355 1.7E-118 T 22-04-2016 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 SUPERFAMILY SSF55681 105 355 3.82E-78 T 22-04-2016 TRD_RS02925 4f73b199a61f8ecda1e45f667f0c3b83 359 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 21 354 45.151 T 22-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 128 140 5.2E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 76 95 5.2E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 60 75 5.2E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 45 60 5.2E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 95 112 5.2E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PRINTS PR01034 Ribosomal protein S12 signature 112 128 5.2E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 Gene3D G3DSA:2.40.50.140 2 141 3.2E-63 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PANTHER PTHR11652 2 25 2.9E-67 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 PANTHER PTHR11652 44 134 2.9E-67 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 Pfam PF00164 Ribosomal protein S12/S23 2 141 8.4E-41 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 ProSitePatterns PS00055 Ribosomal protein S12 signature. 61 68 - T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 141 7.2E-66 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 141 40.726 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 TRD_RS04550 fdfc248bc2fd289700745760c2e27186 142 SUPERFAMILY SSF50249 2 141 2.48E-48 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS06815 61157dd19e5771b042ae8aa181c6f748 71 Pfam PF04964 Flp/Fap pilin component 27 61 4.0E-8 T 22-04-2016 IPR007047 Flp/Fap pilin component TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 315 1.5E-52 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 11 327 6.4E-88 T 22-04-2016 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 Gene3D G3DSA:3.40.50.1100 49 119 6.6E-4 T 22-04-2016 TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 SUPERFAMILY SSF53686 5 326 8.23E-85 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 Gene3D G3DSA:3.40.50.1100 120 327 3.2E-67 T 22-04-2016 TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 PANTHER PTHR10314 2 316 1.4E-88 T 22-04-2016 TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 PIRSF PIRSF006278 1 334 1.0E-95 T 22-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase TRD_RS07535 63072fba48ba9e4bec6bc3e8a30ffb1c 340 PANTHER PTHR10314:SF105 2 316 1.4E-88 T 22-04-2016 TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 SUPERFAMILY SSF50969 666 877 7.53E-6 T 22-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 Gene3D G3DSA:2.130.10.10 664 694 1.0E-10 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 Gene3D G3DSA:2.130.10.10 749 827 1.0E-10 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 Gene3D G3DSA:2.130.10.10 352 493 1.0E-10 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 SUPERFAMILY SSF82171 321 422 2.35E-14 T 22-04-2016 TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 SUPERFAMILY SSF82171 554 689 2.35E-14 T 22-04-2016 TRD_RS00040 f2dcc2358ccc8d085cf6d6a105e5738e 894 SUPERFAMILY SSF82171 208 265 2.35E-14 T 22-04-2016 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 PANTHER PTHR24220 306 319 1.0E-110 T 22-04-2016 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 PANTHER PTHR24220 21 237 1.0E-110 T 22-04-2016 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 PANTHER PTHR24220:SF414 306 319 1.0E-110 T 22-04-2016 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 PANTHER PTHR24220:SF414 21 237 1.0E-110 T 22-04-2016 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 Pfam PF00005 ABC transporter 36 173 2.6E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 SUPERFAMILY SSF52540 13 238 4.12E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 Gene3D G3DSA:3.40.50.300 11 243 3.3E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05345 a4fa1a4b4c76f4a0b67f2d869e2fe5e0 319 SMART SM00382 44 222 6.5E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 SUPERFAMILY SSF56235 2 173 7.12E-56 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 4 175 38.346 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 Gene3D G3DSA:3.60.20.10 5 172 3.9E-74 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 PANTHER PTHR32194 2 172 4.6E-95 T 22-04-2016 TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 Pfam PF00227 Proteasome subunit 1 173 8.3E-23 T 22-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 5 173 1.8E-76 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 TRD_RS07500 a42ed816ba39618fd9e013ea9d2fda49 192 PIRSF PIRSF039093 1 177 3.8E-78 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 TRD_RS00420 40d87a5f43c5d83be24c961e4440f9f1 446 SUPERFAMILY SSF53756 67 429 1.26E-81 T 22-04-2016 TRD_RS00420 40d87a5f43c5d83be24c961e4440f9f1 446 Pfam PF13439 Glycosyltransferase Family 4 69 225 1.7E-20 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS00420 40d87a5f43c5d83be24c961e4440f9f1 446 Gene3D G3DSA:3.40.50.2000 213 405 2.0E-28 T 22-04-2016 TRD_RS00420 40d87a5f43c5d83be24c961e4440f9f1 446 Pfam PF00534 Glycosyl transferases group 1 248 404 1.2E-27 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS00420 40d87a5f43c5d83be24c961e4440f9f1 446 PANTHER PTHR12526 120 430 8.4E-71 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 SUPERFAMILY SSF53850 91 594 3.26E-129 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 Gene3D G3DSA:3.10.105.10 378 573 2.7E-52 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 Gene3D G3DSA:3.40.190.10 280 377 1.5E-34 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 Gene3D G3DSA:3.90.76.10 105 279 2.6E-43 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 PANTHER PTHR30290 26 593 4.0E-149 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 139 521 7.7E-83 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 PANTHER PTHR30290:SF10 26 593 4.0E-149 T 22-04-2016 TRD_RS01820 abfc9347ec6f6e09516ffb100cd9fc45 610 PIRSF PIRSF002741 35 596 2.2E-104 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 TIGRFAM TIGR01391 dnaG: DNA primase 5 430 1.8E-125 T 22-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 PIRSF PIRSF002811 1 597 3.5E-153 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 SMART SM00493 254 325 5.4E-15 T 22-04-2016 IPR006171 Toprim domain TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Hamap MF_00974 DNA primase [dnaG]. 1 588 26.597 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 PANTHER PTHR30313 1 323 3.5E-128 T 22-04-2016 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 PANTHER PTHR30313 345 592 3.5E-128 T 22-04-2016 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Gene3D G3DSA:3.90.580.10 3 94 6.3E-38 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Gene3D G3DSA:3.90.980.10 110 235 5.0E-41 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 SMART SM00400 32 86 2.2E-32 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 SUPERFAMILY SSF56731 110 436 2.49E-90 T 22-04-2016 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 SUPERFAMILY SSF57783 3 97 1.87E-35 T 22-04-2016 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Pfam PF08275 DNA primase catalytic core, N-terminal domain 129 246 2.9E-37 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Gene3D G3DSA:3.40.1360.10 236 377 1.5E-37 T 22-04-2016 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Pfam PF13155 Toprim-like 257 324 4.2E-14 T 22-04-2016 TRD_RS01945 c5e0cb1f203204506525b4fc81a95dce 616 Pfam PF01807 CHC2 zinc finger 4 94 5.6E-37 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 TRD_RS01240 1595707f0ece7de43a7261ad6bf42822 392 SUPERFAMILY SSF49452 25 119 2.55E-6 T 22-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 TRD_RS01240 1595707f0ece7de43a7261ad6bf42822 392 Pfam PF13620 Carboxypeptidase regulatory-like domain 33 119 1.3E-10 T 22-04-2016 TRD_RS01240 1595707f0ece7de43a7261ad6bf42822 392 Gene3D G3DSA:2.60.40.1120 33 125 2.3E-5 T 22-04-2016 IPR014766 Carboxypeptidase, regulatory domain TRD_RS00840 15c5b9c9c5dd997b2aee4b1332e39ad9 179 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 17 148 1.3E-29 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 TRD_RS00840 15c5b9c9c5dd997b2aee4b1332e39ad9 179 PANTHER PTHR33540 8 167 4.7E-40 T 22-04-2016 TRD_RS00840 15c5b9c9c5dd997b2aee4b1332e39ad9 179 PANTHER PTHR33540:SF2 8 167 4.7E-40 T 22-04-2016 TRD_RS00840 15c5b9c9c5dd997b2aee4b1332e39ad9 179 SUPERFAMILY SSF52540 25 123 4.97E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00840 15c5b9c9c5dd997b2aee4b1332e39ad9 179 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 13 138 5.0E-34 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 TRD_RS00840 15c5b9c9c5dd997b2aee4b1332e39ad9 179 Gene3D G3DSA:3.40.50.300 10 162 1.6E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08865 949aaab9658c37d08174810a975cab12 115 Pfam PF01230 HIT domain 14 108 3.7E-24 T 22-04-2016 IPR001310 Histidine triad (HIT) protein TRD_RS08865 949aaab9658c37d08174810a975cab12 115 SUPERFAMILY SSF54197 2 109 8.2E-35 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 TRD_RS08865 949aaab9658c37d08174810a975cab12 115 PANTHER PTHR23089:SF2 5 115 1.0E-35 T 22-04-2016 TRD_RS08865 949aaab9658c37d08174810a975cab12 115 PRINTS PR00332 Histidine triad family signature 95 105 1.9E-13 T 22-04-2016 IPR001310 Histidine triad (HIT) protein TRD_RS08865 949aaab9658c37d08174810a975cab12 115 PRINTS PR00332 Histidine triad family signature 27 45 1.9E-13 T 22-04-2016 IPR001310 Histidine triad (HIT) protein TRD_RS08865 949aaab9658c37d08174810a975cab12 115 PRINTS PR00332 Histidine triad family signature 6 22 1.9E-13 T 22-04-2016 IPR001310 Histidine triad (HIT) protein TRD_RS08865 949aaab9658c37d08174810a975cab12 115 Gene3D G3DSA:3.30.428.10 4 110 2.5E-35 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 TRD_RS08865 949aaab9658c37d08174810a975cab12 115 PANTHER PTHR23089 5 115 1.0E-35 T 22-04-2016 IPR001310 Histidine triad (HIT) protein TRD_RS08865 949aaab9658c37d08174810a975cab12 115 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 22-04-2016 IPR019808 Histidine triad, conserved site TRD_RS02255 ac1a1cad7c51173664bb1960351cd49d 232 PANTHER PTHR12993 1 213 1.0E-42 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS02255 ac1a1cad7c51173664bb1960351cd49d 232 SUPERFAMILY SSF102588 2 208 9.29E-51 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS02255 ac1a1cad7c51173664bb1960351cd49d 232 PANTHER PTHR12993:SF11 1 213 1.0E-42 T 22-04-2016 TRD_RS02255 ac1a1cad7c51173664bb1960351cd49d 232 Gene3D G3DSA:3.40.50.10320 2 227 3.1E-57 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS02255 ac1a1cad7c51173664bb1960351cd49d 232 Pfam PF02585 GlcNAc-PI de-N-acetylase 1 129 1.2E-31 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS06270 32a4fe057107ce24e2b6d00453c25a80 280 Pfam PF01925 Sulfite exporter TauE/SafE 10 265 1.3E-44 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 TRD_RS06270 32a4fe057107ce24e2b6d00453c25a80 280 PANTHER PTHR30269 1 276 2.9E-72 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 TRD_RS06270 32a4fe057107ce24e2b6d00453c25a80 280 PANTHER PTHR30269:SF23 1 276 2.9E-72 T 22-04-2016 TRD_RS01020 55262fea52e239b02889a3879ea28e4a 442 PANTHER PTHR31503 33 309 2.6E-51 T 22-04-2016 TRD_RS01020 55262fea52e239b02889a3879ea28e4a 442 Pfam PF01699 Sodium/calcium exchanger protein 26 171 1.2E-8 T 22-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 TRD_RS01020 55262fea52e239b02889a3879ea28e4a 442 Pfam PF01699 Sodium/calcium exchanger protein 193 313 7.0E-6 T 22-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 SUPERFAMILY SSF56042 133 319 5.53E-48 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 PANTHER PTHR10256 5 322 2.5E-96 T 22-04-2016 TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 Pfam PF00586 AIR synthase related protein, N-terminal domain 21 127 3.5E-17 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 Gene3D G3DSA:3.90.650.10 146 320 7.5E-17 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 Pfam PF02769 AIR synthase related protein, C-terminal domain 139 319 5.3E-24 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 Gene3D G3DSA:3.30.1330.10 4 132 1.0E-26 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 PIRSF PIRSF036407 1 323 2.0E-98 T 22-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 SUPERFAMILY SSF55326 8 131 5.83E-36 T 22-04-2016 TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 Hamap MF_00625 Selenide, water dikinase [selD]. 1 324 34.716 T 22-04-2016 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 TRD_RS06120 f73dd2ccb4de8acb15396c3b05977f0f 325 TIGRFAM TIGR00476 selD: selenide, water dikinase 8 290 1.4E-101 T 22-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 TRD_RS00785 26398a8af2fa41b3b58b970eea1356a6 140 Pfam PF00210 Ferritin-like domain 7 137 3.4E-29 T 22-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 TRD_RS00785 26398a8af2fa41b3b58b970eea1356a6 140 PANTHER PTHR30295 1 137 2.3E-30 T 22-04-2016 TRD_RS00785 26398a8af2fa41b3b58b970eea1356a6 140 PANTHER PTHR30295:SF7 1 137 2.3E-30 T 22-04-2016 TRD_RS00785 26398a8af2fa41b3b58b970eea1356a6 140 Gene3D G3DSA:1.20.1260.10 1 138 3.8E-38 T 22-04-2016 IPR012347 Ferritin-related TRD_RS00785 26398a8af2fa41b3b58b970eea1356a6 140 SUPERFAMILY SSF47240 1 137 1.96E-34 T 22-04-2016 IPR009078 Ferritin-like superfamily TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 SMART SM00382 31 225 8.8E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 Gene3D G3DSA:3.40.50.300 5 245 1.3E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 246 1.5E-9 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 Pfam PF00005 ABC transporter 22 177 1.2E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 SUPERFAMILY SSF52540 5 245 7.0E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 PANTHER PTHR24220:SF358 8 246 6.4E-88 T 22-04-2016 TRD_RS06580 c3ad7d4d247dbc6ee752f8f7a954369e 258 PANTHER PTHR24220 8 246 6.4E-88 T 22-04-2016 TRD_RS06590 84d40922768b0be1d5c2a112b21eb79f 312 Gene3D G3DSA:3.20.20.140 1 299 1.9E-77 T 22-04-2016 TRD_RS06590 84d40922768b0be1d5c2a112b21eb79f 312 PANTHER PTHR21240 1 299 6.5E-77 T 22-04-2016 TRD_RS06590 84d40922768b0be1d5c2a112b21eb79f 312 SUPERFAMILY SSF51556 1 299 2.19E-71 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS06590 84d40922768b0be1d5c2a112b21eb79f 312 PANTHER PTHR21240:SF3 1 299 6.5E-77 T 22-04-2016 IPR032465 Amino-carboxymuconate-semialdehyde decarboxylase GO:0001760|GO:0006568|GO:1904984 KEGG: 00380+4.1.1.45|MetaCyc: PWY-5647|MetaCyc: PWY-5652|MetaCyc: PWY-5654|UniPathway: UPA00270 TRD_RS06590 84d40922768b0be1d5c2a112b21eb79f 312 Pfam PF04909 Amidohydrolase 3 298 1.6E-28 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 SMART SM01092 181 284 4.6E-29 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 2.1E-44 T 22-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 PANTHER PTHR11908 1 287 2.2E-83 T 22-04-2016 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 Gene3D G3DSA:3.30.43.10 1 54 1.1E-22 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 Gene3D G3DSA:3.30.390.50 179 289 6.2E-34 T 22-04-2016 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 SUPERFAMILY SSF55447 180 285 2.09E-27 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 182 282 2.1E-25 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 SUPERFAMILY SSF56176 1 174 2.38E-52 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 Gene3D G3DSA:3.30.465.10 59 174 1.6E-32 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 TRD_RS02660 d92d3cf64177d17bd29c243e46b0229d 294 PANTHER PTHR11908:SF68 1 287 2.2E-83 T 22-04-2016 TRD_RS05620 c4ca45a9754b4832116836b2c5b63eb2 148 Gene3D G3DSA:3.30.530.20 2 146 2.8E-49 T 22-04-2016 IPR023393 START-like domain TRD_RS05620 c4ca45a9754b4832116836b2c5b63eb2 148 PANTHER PTHR38588:SF1 2 148 1.4E-32 T 22-04-2016 TRD_RS05620 c4ca45a9754b4832116836b2c5b63eb2 148 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 144 3.9E-33 T 22-04-2016 IPR010419 Carbon monoxide dehydrogenase subunit G TRD_RS05620 c4ca45a9754b4832116836b2c5b63eb2 148 PANTHER PTHR38588 2 148 1.4E-32 T 22-04-2016 TRD_RS05620 c4ca45a9754b4832116836b2c5b63eb2 148 SUPERFAMILY SSF55961 2 144 1.9E-39 T 22-04-2016 TRD_RS03960 6919f7aaf9475bd8d8fdbb1373eab39c 121 SUPERFAMILY SSF103196 4 114 1.2E-15 T 22-04-2016 TRD_RS03960 6919f7aaf9475bd8d8fdbb1373eab39c 121 SMART SM00960 3 92 7.0E-9 T 22-04-2016 IPR004942 Roadblock/LAMTOR2 domain TRD_RS03960 6919f7aaf9475bd8d8fdbb1373eab39c 121 Gene3D G3DSA:3.30.450.30 3 116 6.9E-17 T 22-04-2016 TRD_RS03960 6919f7aaf9475bd8d8fdbb1373eab39c 121 Pfam PF03259 Roadblock/LC7 domain 3 92 7.8E-10 T 22-04-2016 IPR004942 Roadblock/LAMTOR2 domain TRD_RS13425 257be94ac4bee47cabfac3cb19457ef9 282 SMART SM00849 55 260 1.8E-14 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS13425 257be94ac4bee47cabfac3cb19457ef9 282 PANTHER PTHR23200 1 271 8.9E-42 T 22-04-2016 TRD_RS13425 257be94ac4bee47cabfac3cb19457ef9 282 Gene3D G3DSA:3.60.15.10 22 272 2.4E-42 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS13425 257be94ac4bee47cabfac3cb19457ef9 282 SUPERFAMILY SSF56281 52 270 2.88E-35 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS13425 257be94ac4bee47cabfac3cb19457ef9 282 Pfam PF00753 Metallo-beta-lactamase superfamily 56 260 2.7E-20 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS13425 257be94ac4bee47cabfac3cb19457ef9 282 PANTHER PTHR23200:SF43 1 271 8.9E-42 T 22-04-2016 TRD_RS01305 c8a6e3e47a41d985ce89afadbe4db1ed 251 SUPERFAMILY SSF144091 12 231 6.15E-43 T 22-04-2016 TRD_RS01305 c8a6e3e47a41d985ce89afadbe4db1ed 251 Gene3D G3DSA:1.20.1540.10 15 226 1.3E-43 T 22-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 TRD_RS01305 c8a6e3e47a41d985ce89afadbe4db1ed 251 PANTHER PTHR22936 13 239 9.6E-39 T 22-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 TRD_RS01305 c8a6e3e47a41d985ce89afadbe4db1ed 251 Pfam PF01694 Rhomboid family 73 227 2.9E-38 T 22-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 SMART SM00518 1 270 6.0E-103 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 SUPERFAMILY SSF51658 1 272 1.31E-88 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 Gene3D G3DSA:3.20.20.150 1 273 4.6E-104 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 PANTHER PTHR21445 1 273 4.6E-112 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 PANTHER PTHR21445:SF0 1 273 4.6E-112 T 22-04-2016 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 59 67 - T 22-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 1 267 1.9E-83 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 Hamap MF_00152 Probable endonuclease 4 [nfo]. 1 270 38.54 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 206 222 - T 22-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 TRD_RS07800 a075c0e72dd06b39e3f610299bb9e7f3 275 Pfam PF01261 Xylose isomerase-like TIM barrel 12 230 5.1E-41 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS00775 eacddf7b93c2fa5f9d64000abc7ee30c 77 Gene3D G3DSA:3.30.110.40 3 75 1.6E-29 T 22-04-2016 IPR001455 TusA-like domain TRD_RS00775 eacddf7b93c2fa5f9d64000abc7ee30c 77 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 22-04-2016 IPR001455 TusA-like domain TRD_RS00775 eacddf7b93c2fa5f9d64000abc7ee30c 77 Pfam PF01206 Sulfurtransferase TusA 7 74 4.3E-22 T 22-04-2016 IPR001455 TusA-like domain TRD_RS00775 eacddf7b93c2fa5f9d64000abc7ee30c 77 PANTHER PTHR33279 2 77 5.2E-23 T 22-04-2016 TRD_RS00775 eacddf7b93c2fa5f9d64000abc7ee30c 77 SUPERFAMILY SSF64307 2 75 2.49E-23 T 22-04-2016 IPR001455 TusA-like domain TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 PANTHER PTHR18968 6 352 3.5E-89 T 22-04-2016 TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 334 8.4E-28 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 PANTHER PTHR18968:SF13 6 352 3.5E-89 T 22-04-2016 TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 Gene3D G3DSA:3.40.50.1220 193 352 1.0E-36 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 SUPERFAMILY SSF52467 165 358 1.16E-37 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 180 2.7E-55 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 Gene3D G3DSA:3.40.50.970 11 186 2.9E-59 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS12845 ce19147af380591dd25da3a2744a5dbc 380 SUPERFAMILY SSF52518 11 194 5.44E-52 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Pfam PF01266 FAD dependent oxidoreductase 85 432 2.2E-59 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.30.9.10 297 389 3.0E-7 T 22-04-2016 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.30.9.10 165 217 3.0E-7 T 22-04-2016 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 SUPERFAMILY SSF51905 83 297 1.86E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 SUPERFAMILY SSF51905 393 457 1.86E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.50.50.60 393 451 2.2E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.50.50.60 77 160 2.2E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 Gene3D G3DSA:3.50.50.60 218 296 2.2E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06805 36a27b8a87ec572ca3e0d9a2ce4d2042 471 PANTHER PTHR13847 81 450 8.7E-74 T 22-04-2016 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 Hamap MF_00323 Ferrochelatase [hemH]. 4 310 31.424 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 ProSitePatterns PS00534 Ferrochelatase signature. 181 199 - T 22-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 TIGRFAM TIGR00109 hemH: ferrochelatase 3 309 6.3E-73 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 Gene3D G3DSA:3.40.50.1400 4 189 3.0E-46 T 22-04-2016 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 PANTHER PTHR11108 3 318 8.9E-94 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 Pfam PF00762 Ferrochelatase 6 309 3.3E-82 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 Gene3D G3DSA:3.40.50.1400 190 310 1.0E-35 T 22-04-2016 TRD_RS06495 93ecbcce440908b958d23718b59ea8da 318 SUPERFAMILY SSF53800 3 310 3.27E-82 T 22-04-2016 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 SMART SM00905 5 119 2.6E-51 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 119 2.1E-38 T 22-04-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 PANTHER PTHR20941 3 122 1.1E-31 T 22-04-2016 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 Gene3D G3DSA:3.30.1130.10 2 121 2.3E-44 T 22-04-2016 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 Pfam PF02152 Dihydroneopterin aldolase 6 118 6.7E-37 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 TIGRFAM TIGR00526 folB_dom: FolB domain 3 121 4.2E-31 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06230 fdec45947ab23c0c6488c47a1b0c6a2c 123 SUPERFAMILY SSF55620 1 121 1.02E-38 T 22-04-2016 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 SUPERFAMILY SSF52540 1 231 1.16E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 Gene3D G3DSA:3.40.50.300 1 232 2.5E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 Gene3D G3DSA:3.40.50.300 273 500 9.4E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 PANTHER PTHR24220 298 404 3.2E-75 T 22-04-2016 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 PANTHER PTHR24220 3 282 3.2E-75 T 22-04-2016 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 32 45 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 SUPERFAMILY SSF52540 272 500 3.24E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 SMART SM00382 28 235 5.4E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 SMART SM00382 307 488 4.9E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 Pfam PF00005 ABC transporter 24 170 3.2E-23 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS00915 0935b6889be01e064ec2a1d0aac58e5b 554 Pfam PF00005 ABC transporter 298 439 9.6E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 Gene3D G3DSA:3.40.50.10410 97 191 1.6E-30 T 22-04-2016 IPR023215 Nitrophenylphosphatase-like domain TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 PANTHER PTHR19288:SF3 5 270 6.2E-90 T 22-04-2016 TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 Pfam PF13242 HAD-hyrolase-like 191 265 2.4E-22 T 22-04-2016 TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 Pfam PF13344 Haloacid dehalogenase-like hydrolase 18 113 2.4E-27 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 SUPERFAMILY SSF56784 17 266 6.24E-69 T 22-04-2016 IPR023214 HAD-like domain TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 Gene3D G3DSA:3.40.50.1000 14 91 6.1E-46 T 22-04-2016 IPR023214 HAD-like domain TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 Gene3D G3DSA:3.40.50.1000 192 268 6.1E-46 T 22-04-2016 IPR023214 HAD-like domain TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 PANTHER PTHR19288 5 270 6.2E-90 T 22-04-2016 TRD_RS04945 871be2a0cdf10d68b1abb8348234ea57 274 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 18 241 2.3E-47 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 127 205 1.1E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 45 126 3.3E-10 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 225 304 4.4E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 128 202 2.4E-11 T 22-04-2016 IPR003029 S1 domain GO:0003676 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 223 293 9.5E-23 T 22-04-2016 IPR003029 S1 domain GO:0003676 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 44 112 4.0E-9 T 22-04-2016 IPR003029 S1 domain GO:0003676 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Pfam PF00575 S1 RNA binding domain 307 379 2.5E-19 T 22-04-2016 IPR003029 S1 domain GO:0003676 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PANTHER PTHR10724 25 393 2.1E-95 T 22-04-2016 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 245 266 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 134 150 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 323 342 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 362 380 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 63 77 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 45 63 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PRINTS PR00681 Ribosomal protein S1 signature 110 129 3.8E-46 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 129 217 7.8E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 Gene3D G3DSA:2.40.50.140 305 382 4.6E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 222 306 2.98E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 PANTHER PTHR10724:SF6 25 393 2.1E-95 T 22-04-2016 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 28 138 6.04E-16 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SUPERFAMILY SSF50249 295 381 9.29E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 43 113 3.5E-6 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 308 379 2.9E-23 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 129 204 4.4E-10 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS04775 aca5f044e5869a069534cea88fec2f89 443 SMART SM00316 223 293 2.1E-28 T 22-04-2016 IPR022967 RNA-binding domain, S1 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Hamap MF_01894 Chromosome partition protein Smc [smc]. 3 1183 19.924 T 22-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 SUPERFAMILY SSF52540 3 202 8.5E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 SUPERFAMILY SSF52540 1067 1179 8.5E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 5 183 2.5E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 317 338 2.5E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 675 725 1.2E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 859 860 1.2E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Gene3D G3DSA:3.40.50.300 1074 1184 1.2E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 SMART SM00968 521 638 6.1E-31 T 22-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 SUPERFAMILY SSF75553 505 681 1.11E-37 T 22-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 PIRSF PIRSF005719 3 1185 1.8E-236 T 22-04-2016 IPR024704 Structural maintenance of chromosomes protein TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 4 1181 5.5E-235 T 22-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 1174 4.7E-61 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 PANTHER PTHR18937 3 483 3.0E-191 T 22-04-2016 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 PANTHER PTHR18937 511 1183 3.0E-191 T 22-04-2016 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 Pfam PF06470 SMC proteins Flexible Hinge Domain 521 637 8.4E-26 T 22-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 PANTHER PTHR18937:SF171 3 483 3.0E-191 T 22-04-2016 TRD_RS08175 45803025f6d852a5a896548d2d374f63 1187 PANTHER PTHR18937:SF171 511 1183 3.0E-191 T 22-04-2016 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 49 133 5.0E-34 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 PANTHER PTHR10938 1 133 4.4E-55 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 Gene3D G3DSA:3.30.110.10 45 134 2.3E-34 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 41 9.1E-19 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 ProSitePatterns PS00938 Initiation factor 3 signature. 24 37 - T 22-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 133 5.2E-54 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 SUPERFAMILY SSF55200 49 134 1.44E-30 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 SUPERFAMILY SSF54364 1 44 7.85E-17 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 TRD_RS03790 48167f6590e9ef7bc81739ab04d4a1e5 152 Gene3D G3DSA:3.10.20.80 1 44 3.9E-20 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 SUPERFAMILY SSF50156 60 167 9.73E-23 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 67 136 2.1E-13 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 28 332 1.0E-87 T 22-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 SUPERFAMILY SSF52096 160 334 5.14E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 SUPERFAMILY SSF52096 6 86 5.14E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 SMART SM00245 141 330 2.4E-60 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 Pfam PF03572 Peptidase family S41 166 329 4.8E-48 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 Gene3D G3DSA:3.30.750.44 10 74 2.5E-8 T 22-04-2016 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 Gene3D G3DSA:2.30.42.10 75 149 1.5E-24 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 PANTHER PTHR32060 6 367 2.0E-98 T 22-04-2016 TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 Gene3D G3DSA:3.90.226.10 150 335 5.3E-56 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS02245 93bc57cef853b34bf34fc30b1a06b28a 370 SMART SM00228 68 139 1.8E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 Gene3D G3DSA:2.130.10.140 159 276 4.1E-23 T 22-04-2016 TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 Gene3D G3DSA:2.130.10.140 317 432 4.1E-23 T 22-04-2016 TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 Gene3D G3DSA:2.130.10.140 14 158 9.3E-9 T 22-04-2016 TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF50939 204 268 3.33E-22 T 22-04-2016 IPR011040 Sialidases TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF50939 109 168 3.33E-22 T 22-04-2016 IPR011040 Sialidases TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF50939 301 430 3.33E-22 T 22-04-2016 IPR011040 Sialidases TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF69322 251 330 4.58E-5 T 22-04-2016 TRD_RS07860 7730044ae351e51ce7adf611142cc76c 601 SUPERFAMILY SSF69322 416 550 4.58E-5 T 22-04-2016 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 215 227 4.2E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 4.2E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 4.2E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 4.2E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 Gene3D G3DSA:1.10.240.10 232 330 2.3E-30 T 22-04-2016 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 Pfam PF00579 tRNA synthetases class I (W and Y) 36 319 1.7E-71 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 SUPERFAMILY SSF52374 11 318 2.93E-89 T 22-04-2016 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 Gene3D G3DSA:3.10.290.10 331 398 9.5E-21 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 11 398 4.9E-105 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 Pfam PF01479 S4 domain 342 381 3.5E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 PANTHER PTHR11766 14 397 3.1E-197 T 22-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 Gene3D G3DSA:3.40.50.620 6 231 1.3E-76 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 SMART SM00363 339 400 2.8E-5 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 SUPERFAMILY SSF55174 305 398 1.57E-16 T 22-04-2016 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 6 400 42.686 T 22-04-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 TRD_RS03515 d5cd74f3fe70f40ae0b25c46e99522cf 405 PANTHER PTHR11766:SF1 14 397 3.1E-197 T 22-04-2016 TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Gene3D G3DSA:3.40.190.10 239 340 1.5E-22 T 22-04-2016 TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Gene3D G3DSA:3.10.105.10 341 539 1.2E-51 T 22-04-2016 TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Gene3D G3DSA:3.90.76.10 81 238 3.4E-49 T 22-04-2016 TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 PIRSF PIRSF002741 36 568 1.1E-109 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 PANTHER PTHR30290 74 550 1.3E-120 T 22-04-2016 TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 115 482 1.5E-85 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS07615 b2c6d2fa4b1ff63d441d8431350b7d8f 574 SUPERFAMILY SSF53850 73 556 1.85E-127 T 22-04-2016 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 Pfam PF00085 Thioredoxin 5 106 4.0E-33 T 22-04-2016 IPR013766 Thioredoxin domain GO:0045454 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 PIRSF PIRSF000077 1 107 3.1E-43 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 PANTHER PTHR10438 5 107 5.4E-45 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 PANTHER PTHR10438:SF256 5 107 5.4E-45 T 22-04-2016 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 Gene3D G3DSA:3.40.30.10 4 107 1.2E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 PRINTS PR00421 Thioredoxin family signature 23 31 1.2E-9 T 22-04-2016 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 PRINTS PR00421 Thioredoxin family signature 31 40 1.2E-9 T 22-04-2016 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 PRINTS PR00421 Thioredoxin family signature 71 82 1.2E-9 T 22-04-2016 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 106 1.6E-40 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 TRD_RS00330 ee0f76319579d9ccdc8a0ca048d472ad 107 SUPERFAMILY SSF52833 3 107 6.12E-40 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 SMART SM00562 1 138 2.6E-76 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 36.059 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 22-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 Gene3D G3DSA:3.30.70.141 2 147 1.9E-58 T 22-04-2016 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 Pfam PF00334 Nucleoside diphosphate kinase 2 135 1.3E-54 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PANTHER PTHR11349 1 147 1.1E-78 T 22-04-2016 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 6.9E-43 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 6.9E-43 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 6.9E-43 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 6.9E-43 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 6.9E-43 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 TRD_RS08275 7cac91f0b6f3a9191dba1de9e01fb7fc 149 SUPERFAMILY SSF54919 1 147 2.75E-56 T 22-04-2016 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 Pfam PF01174 SNO glutamine amidotransferase family 7 193 3.9E-55 T 22-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 PANTHER PTHR31559:SF0 1 197 1.1E-87 T 22-04-2016 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 PIRSF PIRSF005639 1 198 9.9E-72 T 22-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 SUPERFAMILY SSF52317 3 193 2.17E-52 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 5 193 37.165 T 22-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 5 191 7.6E-64 T 22-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 ProSitePatterns PS01236 PdxT/SNO family family signature. 42 52 - T 22-04-2016 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 Gene3D G3DSA:3.40.50.880 2 196 8.1E-76 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00120 f085cc2a6a04174c71f77e3d328f061a 202 PANTHER PTHR31559 1 197 1.1E-87 T 22-04-2016 TRD_RS03545 cb26d43c27ffc7e8edf3665745b6039e 119 SUPERFAMILY SSF64376 16 100 4.32E-24 T 22-04-2016 IPR007393 Domain of unknown function DUF448 TRD_RS03545 cb26d43c27ffc7e8edf3665745b6039e 119 Gene3D G3DSA:3.30.1230.10 16 98 5.9E-27 T 22-04-2016 IPR007393 Domain of unknown function DUF448 TRD_RS03545 cb26d43c27ffc7e8edf3665745b6039e 119 PANTHER PTHR34215:SF1 1 117 2.9E-22 T 22-04-2016 TRD_RS03545 cb26d43c27ffc7e8edf3665745b6039e 119 PANTHER PTHR34215 1 117 2.9E-22 T 22-04-2016 TRD_RS03545 cb26d43c27ffc7e8edf3665745b6039e 119 Pfam PF04296 Protein of unknown function (DUF448) 21 93 4.6E-24 T 22-04-2016 IPR007393 Domain of unknown function DUF448 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 4 28 2.8E-31 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 140 158 2.8E-31 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 170 183 2.8E-31 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 28 52 2.8E-31 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PRINTS PR00086 L-lactate dehydrogenase signature 116 136 2.8E-31 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 SUPERFAMILY SSF56327 144 305 4.04E-53 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PIRSF PIRSF000102 1 309 1.6E-105 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 Gene3D G3DSA:3.90.110.10 144 307 4.3E-57 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 SUPERFAMILY SSF51735 2 142 1.81E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 Hamap MF_00487 Malate dehydrogenase [mdh]. 3 306 41.666 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PANTHER PTHR11540 2 303 1.3E-135 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 Gene3D G3DSA:3.40.50.720 2 142 3.9E-47 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 2 303 1.7E-143 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 4 142 1.9E-40 T 22-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 146 303 1.0E-29 T 22-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 TRD_RS04235 729c7bd1b664f7ed880df4e61d9931bb 309 PANTHER PTHR11540:SF16 2 303 1.3E-135 T 22-04-2016 TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 PANTHER PTHR13812:SF19 1 329 1.5E-101 T 22-04-2016 TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 2 317 3.9E-79 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 Gene3D G3DSA:3.40.50.720 139 302 5.3E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 PANTHER PTHR13812 1 329 1.5E-101 T 22-04-2016 TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 SUPERFAMILY SSF51735 1 328 1.2E-95 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 PIRSF PIRSF001439 1 329 1.8E-85 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin TRD_RS03635 0c11c7906b7c76354f6d8016311a9b80 329 Gene3D G3DSA:3.30.1780.10 1 138 2.0E-47 T 22-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 SUPERFAMILY SSF52540 13 238 8.14E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 SUPERFAMILY SSF48019 252 434 9.86E-76 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 56 165 1.0E-17 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 PANTHER PTHR13779:SF7 5 439 9.7E-218 T 22-04-2016 TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 SMART SM00382 52 169 3.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 PANTHER PTHR13779 5 439 9.7E-218 T 22-04-2016 TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Pfam PF16193 AAA C-terminal domain 193 266 1.7E-23 T 22-04-2016 IPR032423 AAA ATPase, C-terminal domain TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:1.20.272.10 248 346 9.3E-46 T 22-04-2016 TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Pfam PF12002 MgsA AAA+ ATPase C terminal 267 432 1.6E-69 T 22-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:3.40.50.300 12 157 6.5E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:1.10.8.60 158 238 7.7E-14 T 22-04-2016 TRD_RS01990 1d28e1d6accdc6a889874f0c867b79e2 450 Gene3D G3DSA:1.10.3710.10 347 439 1.4E-30 T 22-04-2016 TRD_RS05030 a3bda5b84c551ca4df72badec858ccc6 69 PANTHER PTHR33383 1 69 1.7E-42 T 22-04-2016 TRD_RS05030 a3bda5b84c551ca4df72badec858ccc6 69 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.83 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor TRD_RS05030 a3bda5b84c551ca4df72badec858ccc6 69 SMART SM01234 1 68 2.9E-47 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor TRD_RS05030 a3bda5b84c551ca4df72badec858ccc6 69 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 69 3.9E-29 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor TRD_RS05030 a3bda5b84c551ca4df72badec858ccc6 69 Pfam PF01809 Haemolytic domain 3 68 2.1E-32 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor TRD_RS05030 a3bda5b84c551ca4df72badec858ccc6 69 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 4.0E-18 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor TRD_RS09160 24eec684e53e351d393d8ffd0cda65b2 121 SUPERFAMILY SSF54106 73 118 8.37E-14 T 22-04-2016 IPR018392 LysM domain TRD_RS09160 24eec684e53e351d393d8ffd0cda65b2 121 Pfam PF01476 LysM domain 75 118 3.2E-16 T 22-04-2016 IPR018392 LysM domain TRD_RS09160 24eec684e53e351d393d8ffd0cda65b2 121 Gene3D G3DSA:3.10.350.10 73 118 3.5E-20 T 22-04-2016 IPR018392 LysM domain TRD_RS09160 24eec684e53e351d393d8ffd0cda65b2 121 SMART SM00257 74 118 1.7E-18 T 22-04-2016 IPR018392 LysM domain TRD_RS08885 2f812ffbdc0c71a18c0c65a83ea6569e 251 Gene3D G3DSA:3.40.50.10320 7 244 2.0E-63 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS08885 2f812ffbdc0c71a18c0c65a83ea6569e 251 Pfam PF02585 GlcNAc-PI de-N-acetylase 11 149 2.6E-33 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS08885 2f812ffbdc0c71a18c0c65a83ea6569e 251 PANTHER PTHR12993 5 220 1.2E-40 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS08885 2f812ffbdc0c71a18c0c65a83ea6569e 251 PANTHER PTHR12993:SF11 5 220 1.2E-40 T 22-04-2016 TRD_RS08885 2f812ffbdc0c71a18c0c65a83ea6569e 251 SUPERFAMILY SSF102588 7 242 9.55E-56 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS02825 f49e640e1976ecda33e4725306787186 583 PANTHER PTHR12631 181 583 6.1E-72 T 22-04-2016 TRD_RS02825 f49e640e1976ecda33e4725306787186 583 SUPERFAMILY SSF51445 248 581 6.49E-59 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS02825 f49e640e1976ecda33e4725306787186 583 Gene3D G3DSA:3.20.20.80 265 581 2.2E-56 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS02825 f49e640e1976ecda33e4725306787186 583 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 251 404 8.8E-9 T 22-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 TRD_RS02825 f49e640e1976ecda33e4725306787186 583 PANTHER PTHR12631:SF4 181 583 6.1E-72 T 22-04-2016 TRD_RS05495 c26bdcc84190a939d7dccc3ca0297d3d 163 SUPERFAMILY SSF159234 50 160 1.18E-16 T 22-04-2016 TRD_RS05495 c26bdcc84190a939d7dccc3ca0297d3d 163 PANTHER PTHR39159 5 159 1.3E-22 T 22-04-2016 TRD_RS05495 c26bdcc84190a939d7dccc3ca0297d3d 163 PANTHER PTHR39159:SF1 5 159 1.3E-22 T 22-04-2016 TRD_RS05495 c26bdcc84190a939d7dccc3ca0297d3d 163 Gene3D G3DSA:2.40.380.10 12 159 5.1E-26 T 22-04-2016 IPR007295 Domain of unknown function DUF402 TRD_RS05495 c26bdcc84190a939d7dccc3ca0297d3d 163 Pfam PF04167 Protein of unknown function (DUF402) 61 125 5.1E-15 T 22-04-2016 IPR007295 Domain of unknown function DUF402 TRD_RS08370 f659527f16dbf7817fb633b3c441de1d 400 PANTHER PTHR11751:SF294 11 397 2.0E-118 T 22-04-2016 TRD_RS08370 f659527f16dbf7817fb633b3c441de1d 400 Gene3D G3DSA:3.40.640.10 65 276 9.7E-82 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS08370 f659527f16dbf7817fb633b3c441de1d 400 SUPERFAMILY SSF53383 3 392 6.12E-105 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS08370 f659527f16dbf7817fb633b3c441de1d 400 PANTHER PTHR11751 11 397 2.0E-118 T 22-04-2016 TRD_RS08370 f659527f16dbf7817fb633b3c441de1d 400 Pfam PF00155 Aminotransferase class I and II 66 386 5.8E-32 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 TRD_RS08370 f659527f16dbf7817fb633b3c441de1d 400 Gene3D G3DSA:3.90.1150.10 277 391 5.9E-8 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS09155 14c012f060226835f5b0a6aa57dc19a1 371 SUPERFAMILY SSF141523 250 369 5.36E-34 T 22-04-2016 TRD_RS09155 14c012f060226835f5b0a6aa57dc19a1 371 Gene3D G3DSA:2.40.440.10 249 370 1.7E-25 T 22-04-2016 TRD_RS09155 14c012f060226835f5b0a6aa57dc19a1 371 PANTHER PTHR30582:SF2 247 371 1.9E-40 T 22-04-2016 TRD_RS09155 14c012f060226835f5b0a6aa57dc19a1 371 Pfam PF03734 L,D-transpeptidase catalytic domain 252 369 2.0E-22 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 TRD_RS09155 14c012f060226835f5b0a6aa57dc19a1 371 PANTHER PTHR30582 247 371 1.9E-40 T 22-04-2016 TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 PANTHER PTHR36110 4 320 1.2E-139 T 22-04-2016 TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 Gene3D G3DSA:3.10.180.10 144 316 1.2E-52 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 Gene3D G3DSA:3.10.180.10 5 131 1.3E-38 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 SUPERFAMILY SSF54593 5 305 2.41E-56 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 PANTHER PTHR36110:SF3 4 320 1.2E-139 T 22-04-2016 TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 128 3.3E-13 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS01440 9eb418bf1e07882682a240cab0ff8448 320 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 157 275 3.7E-17 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 498 2.3E-213 T 22-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 500 1.8E-36 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 510 42.725 T 22-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 22-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 SUPERFAMILY SSF110921 396 500 7.72E-26 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 PANTHER PTHR10277:SF9 1 509 3.5E-260 T 22-04-2016 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 Gene3D G3DSA:3.20.20.70 1 347 6.8E-150 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 Pfam PF00682 HMGL-like 5 274 1.1E-91 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 SMART SM00917 371 501 4.3E-34 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 22-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 SUPERFAMILY SSF51569 1 292 7.69E-99 T 22-04-2016 TRD_RS07915 48451e5d325645a4ee16bdf310a4b238 512 PANTHER PTHR10277 1 509 3.5E-260 T 22-04-2016 TRD_RS06380 ecd416ce167d3a941d44310ec988dba0 198 Gene3D G3DSA:1.10.472.60 42 147 4.4E-26 T 22-04-2016 IPR023169 UPF0413, central domain TRD_RS06380 ecd416ce167d3a941d44310ec988dba0 198 Gene3D G3DSA:3.40.30.10 148 191 1.6E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS06380 ecd416ce167d3a941d44310ec988dba0 198 Gene3D G3DSA:3.40.30.10 5 29 1.6E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS06380 ecd416ce167d3a941d44310ec988dba0 198 SUPERFAMILY SSF52833 2 190 3.96E-27 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS06380 ecd416ce167d3a941d44310ec988dba0 198 Pfam PF01323 DSBA-like thioredoxin domain 2 183 1.2E-12 T 22-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 TRD_RS06745 6250f98597980f4028e0b7ba23a0f9fa 275 PANTHER PTHR13696 3 262 9.1E-88 T 22-04-2016 TRD_RS06745 6250f98597980f4028e0b7ba23a0f9fa 275 Gene3D G3DSA:3.40.50.300 3 253 4.8E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06745 6250f98597980f4028e0b7ba23a0f9fa 275 PANTHER PTHR13696:SF52 3 262 9.1E-88 T 22-04-2016 TRD_RS06745 6250f98597980f4028e0b7ba23a0f9fa 275 SUPERFAMILY SSF52540 3 254 1.01E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06745 6250f98597980f4028e0b7ba23a0f9fa 275 Pfam PF13614 AAA domain 3 177 3.1E-56 T 22-04-2016 IPR025669 AAA domain TRD_RS06290 bebe08949ef69b1ef592bb63e04029be 369 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 62 353 5.1E-61 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS06290 bebe08949ef69b1ef592bb63e04029be 369 SUPERFAMILY SSF53686 2 367 5.11E-76 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme TRD_RS06290 bebe08949ef69b1ef592bb63e04029be 369 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 85 98 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 TRD_RS06290 bebe08949ef69b1ef592bb63e04029be 369 Gene3D G3DSA:3.40.50.1100 129 365 6.5E-50 T 22-04-2016 TRD_RS06290 bebe08949ef69b1ef592bb63e04029be 369 PANTHER PTHR10314:SF78 35 363 6.2E-65 T 22-04-2016 TRD_RS06290 bebe08949ef69b1ef592bb63e04029be 369 PANTHER PTHR10314 35 363 6.2E-65 T 22-04-2016 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 Gene3D G3DSA:3.40.50.450 5 228 9.3E-68 T 22-04-2016 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PANTHER PTHR13697 8 352 7.3E-101 T 22-04-2016 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 7 370 39.5 T 22-04-2016 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PIRSF PIRSF000532 5 371 9.1E-110 T 22-04-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 ProSitePatterns PS00433 Phosphofructokinase signature. 282 300 - T 22-04-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 SUPERFAMILY SSF53784 5 361 7.72E-112 T 22-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 11 30 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 137 154 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 278 300 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 37 50 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 175 191 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 193 210 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 110 126 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 155 173 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 229 241 4.2E-71 T 22-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS02780 59d063072bb5d4c44e35c0b8a36a4f53 375 Pfam PF00365 Phosphofructokinase 8 314 8.1E-96 T 22-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS07040 86acaf3d98281c11666e5cb8902cf8d1 166 Pfam PF02464 Competence-damaged protein 5 156 8.2E-60 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS07040 86acaf3d98281c11666e5cb8902cf8d1 166 Gene3D G3DSA:3.90.950.20 5 158 4.8E-61 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS07040 86acaf3d98281c11666e5cb8902cf8d1 166 PANTHER PTHR13939 3 165 3.5E-66 T 22-04-2016 TRD_RS07040 86acaf3d98281c11666e5cb8902cf8d1 166 PANTHER PTHR13939:SF0 3 165 3.5E-66 T 22-04-2016 TRD_RS07040 86acaf3d98281c11666e5cb8902cf8d1 166 SUPERFAMILY SSF142433 4 157 1.29E-56 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS07040 86acaf3d98281c11666e5cb8902cf8d1 166 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 154 2.5E-47 T 22-04-2016 IPR008136 CinA, C-terminal TRD_RS00195 0f4e304631eae2185dc1abfde32142f3 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 TRD_RS00195 0f4e304631eae2185dc1abfde32142f3 257 PANTHER PTHR11941 3 254 6.5E-106 T 22-04-2016 TRD_RS00195 0f4e304631eae2185dc1abfde32142f3 257 Gene3D G3DSA:1.10.12.10 198 257 5.6E-24 T 22-04-2016 IPR014748 Crontonase, C-terminal TRD_RS00195 0f4e304631eae2185dc1abfde32142f3 257 Gene3D G3DSA:3.90.226.10 3 197 1.1E-75 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS00195 0f4e304631eae2185dc1abfde32142f3 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 256 1.3E-71 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 TRD_RS00195 0f4e304631eae2185dc1abfde32142f3 257 SUPERFAMILY SSF52096 3 257 2.87E-96 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS01785 7773ef0399770ac59c4f253445498ef9 170 PANTHER PTHR30231:SF4 1 164 2.0E-26 T 22-04-2016 TRD_RS01785 7773ef0399770ac59c4f253445498ef9 170 PANTHER PTHR30231 1 164 2.0E-26 T 22-04-2016 TRD_RS01785 7773ef0399770ac59c4f253445498ef9 170 SUPERFAMILY SSF53098 1 167 1.82E-36 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS01785 7773ef0399770ac59c4f253445498ef9 170 Pfam PF00929 Exonuclease 1 155 8.0E-19 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III TRD_RS01785 7773ef0399770ac59c4f253445498ef9 170 Gene3D G3DSA:3.30.420.10 1 166 7.4E-37 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS01785 7773ef0399770ac59c4f253445498ef9 170 SMART SM00479 1 168 2.8E-29 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 Pfam PF01424 R3H domain 167 226 2.9E-13 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 SUPERFAMILY SSF82708 176 227 2.39E-8 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 PANTHER PTHR35800 6 228 5.6E-49 T 22-04-2016 TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 Gene3D G3DSA:3.30.1370.50 159 228 2.2E-26 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 Gene3D G3DSA:3.30.30.80 6 38 7.0E-8 T 22-04-2016 IPR032782 Jag, N-terminal TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 Gene3D G3DSA:3.30.300.120 72 158 9.6E-19 T 22-04-2016 TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 SMART SM00393 148 227 1.3E-19 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 SMART SM01245 9 55 3.7E-9 T 22-04-2016 IPR032782 Jag, N-terminal TRD_RS05020 510dc6a044a6832d3a69c9e01055050b 228 Pfam PF14804 Jag N-terminus 11 38 3.1E-7 T 22-04-2016 IPR032782 Jag, N-terminal TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 SMART SM00529 19 118 2.1E-40 T 22-04-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 Gene3D G3DSA:1.10.10.10 1 65 8.1E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 Pfam PF04023 FeoA domain 139 210 2.6E-17 T 22-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 Gene3D G3DSA:1.10.60.10 68 132 6.0E-27 T 22-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 PANTHER PTHR33238:SF1 1 215 7.5E-79 T 22-04-2016 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 SUPERFAMILY SSF50037 140 210 4.58E-11 T 22-04-2016 IPR008988 Transcriptional repressor, C-terminal TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 58 126 7.2E-28 T 22-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 SMART SM00899 138 211 1.8E-13 T 22-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 1 55 4.8E-16 T 22-04-2016 IPR022687 DTXR-type HTH domain GO:0003677 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 SUPERFAMILY SSF47979 58 132 1.31E-23 T 22-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 SUPERFAMILY SSF46785 1 57 8.77E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS05570 7494a98c47af8002b31a9157f553a0c7 222 PANTHER PTHR33238 1 215 7.5E-79 T 22-04-2016 TRD_RS03860 595844b412fdd275e7418cdd6deb9682 499 Pfam PF04932 O-Antigen ligase 269 424 2.9E-20 T 22-04-2016 IPR007016 O-antigen ligase-related TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 PANTHER PTHR10668:SF83 4 519 7.0E-186 T 22-04-2016 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 PANTHER PTHR10668 4 519 7.0E-186 T 22-04-2016 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 Gene3D G3DSA:3.50.50.60 208 310 1.9E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 Gene3D G3DSA:3.50.50.60 124 125 1.9E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 Gene3D G3DSA:3.50.50.60 5 59 1.9E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 PRINTS PR00891 Rab GDI/REP protein family signature 25 42 8.9E-5 T 22-04-2016 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 PRINTS PR00891 Rab GDI/REP protein family signature 231 252 8.9E-5 T 22-04-2016 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 PRINTS PR00891 Rab GDI/REP protein family signature 7 25 8.9E-5 T 22-04-2016 IPR018203 GDP dissociation inhibitor GO:0005092|GO:0007264 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 SUPERFAMILY SSF51905 2 340 8.72E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 SUPERFAMILY SSF51905 376 397 8.72E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02130 5e7626945187405c5f65488e1eee4e0d 521 Pfam PF01593 Flavin containing amine oxidoreductase 17 328 3.8E-14 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 TRD_RS00790 6ee4064c1c122bad7eff9fcd7a98a7c1 488 SUPERFAMILY SSF53383 28 480 3.58E-110 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS00790 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 5 480 57.295 T 22-04-2016 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 TRD_RS00790 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Gene3D G3DSA:3.40.640.10 78 281 1.3E-35 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS00790 6ee4064c1c122bad7eff9fcd7a98a7c1 488 PANTHER PTHR11773 3 478 6.6E-262 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS00790 6ee4064c1c122bad7eff9fcd7a98a7c1 488 Pfam PF02347 Glycine cleavage system P-protein 42 297 3.4E-10 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS03830 66f8419fec9a50f20d4360c5101b433c 546 SUPERFAMILY SSF56601 272 542 1.82E-81 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS03830 66f8419fec9a50f20d4360c5101b433c 546 SUPERFAMILY SSF56601 158 241 1.82E-81 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS03830 66f8419fec9a50f20d4360c5101b433c 546 Gene3D G3DSA:3.40.710.10 205 543 1.2E-82 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS03830 66f8419fec9a50f20d4360c5101b433c 546 PANTHER PTHR30627 148 543 1.6E-89 T 22-04-2016 TRD_RS03830 66f8419fec9a50f20d4360c5101b433c 546 Gene3D G3DSA:3.90.1310.10 138 204 7.9E-6 T 22-04-2016 TRD_RS03830 66f8419fec9a50f20d4360c5101b433c 546 Pfam PF00905 Penicillin binding protein transpeptidase domain 217 539 5.2E-58 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 SUPERFAMILY SSF54106 293 337 8.5E-12 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:2.70.70.10 412 541 2.2E-40 T 22-04-2016 TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 SUPERFAMILY SSF51261 412 541 2.3E-44 T 22-04-2016 IPR011055 Duplicated hybrid motif TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 PANTHER PTHR21666 421 541 2.2E-37 T 22-04-2016 TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 346 391 4.8E-7 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 293 337 4.2E-17 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Pfam PF01551 Peptidase family M23 441 537 1.7E-28 T 22-04-2016 IPR016047 Peptidase M23 TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 185 230 1.9E-5 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Gene3D G3DSA:3.10.350.10 236 282 3.9E-5 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 185 230 0.87 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 294 338 1.2E-12 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 344 390 1.2 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 SMART SM00257 236 282 0.64 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 189 230 0.019 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 346 390 7.1E-4 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 237 262 3.1E-4 T 22-04-2016 IPR018392 LysM domain TRD_RS13775 82b507502267aa75cf020f461214cf0c 542 Pfam PF01476 LysM domain 295 337 9.0E-15 T 22-04-2016 IPR018392 LysM domain TRD_RS10525 d2e0c83471c3d2c1ec74be1efb64b9ff 122 Gene3D G3DSA:2.40.30.40 6 78 6.7E-15 T 22-04-2016 IPR023367 Peptidase M42, domain 2 TRD_RS10525 d2e0c83471c3d2c1ec74be1efb64b9ff 122 PANTHER PTHR32481 14 121 6.9E-19 T 22-04-2016 TRD_RS10525 d2e0c83471c3d2c1ec74be1efb64b9ff 122 Pfam PF05343 M42 glutamyl aminopeptidase 9 121 1.8E-20 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS10525 d2e0c83471c3d2c1ec74be1efb64b9ff 122 SUPERFAMILY SSF101821 6 95 5.8E-13 T 22-04-2016 TRD_RS10525 d2e0c83471c3d2c1ec74be1efb64b9ff 122 Gene3D G3DSA:3.40.630.10 84 122 6.1E-4 T 22-04-2016 TRD_RS01890 0ce9198bb43b5454938bc42121a09efc 206 PANTHER PTHR12151:SF0 4 206 2.5E-56 T 22-04-2016 TRD_RS01890 0ce9198bb43b5454938bc42121a09efc 206 Pfam PF02630 SCO1/SenC 51 183 4.4E-34 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC TRD_RS01890 0ce9198bb43b5454938bc42121a09efc 206 SUPERFAMILY SSF52833 45 204 1.19E-50 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS01890 0ce9198bb43b5454938bc42121a09efc 206 PANTHER PTHR12151 4 206 2.5E-56 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC TRD_RS01890 0ce9198bb43b5454938bc42121a09efc 206 Gene3D G3DSA:3.40.30.10 17 205 6.5E-56 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS01775 5ec4649e95a8c9511d34a8c4cfc712cc 162 Pfam PF01592 NifU-like N terminal domain 8 130 3.3E-21 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 TRD_RS01775 5ec4649e95a8c9511d34a8c4cfc712cc 162 PANTHER PTHR10093 7 146 1.2E-20 T 22-04-2016 TRD_RS01775 5ec4649e95a8c9511d34a8c4cfc712cc 162 SUPERFAMILY SSF82649 6 129 5.23E-29 T 22-04-2016 TRD_RS01775 5ec4649e95a8c9511d34a8c4cfc712cc 162 Gene3D G3DSA:3.90.1010.10 8 130 7.5E-27 T 22-04-2016 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PANTHER PTHR11686 24 543 1.3E-153 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 257 276 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 352 370 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 422 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 112 130 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 228 244 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 430 447 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 130 149 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 45 70 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 376 394 1.8E-44 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 SUPERFAMILY SSF56235 11 543 2.32E-155 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 Pfam PF01019 Gamma-glutamyltranspeptidase 38 537 1.8E-141 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS01660 1c3b8204a998a7f0be1fe342a73ec606 543 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 25 535 9.9E-111 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 PANTHER PTHR31760:SF0 4 251 5.1E-66 T 22-04-2016 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 30 210 6.0E-43 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 PANTHER PTHR31760 4 251 5.1E-66 T 22-04-2016 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 Pfam PF02527 rRNA small subunit methyltransferase G 28 208 3.2E-44 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 SUPERFAMILY SSF53335 12 247 2.67E-31 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 19 208 24.635 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 PIRSF PIRSF003078 7 229 2.5E-45 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 TRD_RS05975 0eaacbfba3cc5d353796ca168d524d99 254 Gene3D G3DSA:3.40.50.150 9 247 5.9E-63 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 Pfam PF02163 Peptidase family M50 7 418 8.4E-61 T 22-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 431 6.6E-77 T 22-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 Gene3D G3DSA:2.30.42.10 198 272 1.2E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 Gene3D G3DSA:2.30.42.10 85 185 2.9E-21 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 SMART SM00228 108 176 8.1E-9 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 SMART SM00228 194 264 8.8E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 SUPERFAMILY SSF50156 208 292 3.94E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 PANTHER PTHR22939 203 432 2.0E-52 T 22-04-2016 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 Pfam PF13180 PDZ domain 119 183 4.2E-9 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 Pfam PF13180 PDZ domain 203 273 8.4E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 PANTHER PTHR22939:SF78 203 432 2.0E-52 T 22-04-2016 TRD_RS04880 8e40fff2d0400960693825b8f00748fe 438 SUPERFAMILY SSF50156 93 184 1.05E-16 T 22-04-2016 IPR001478 PDZ domain GO:0005515 TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 43 171 9.7E-50 T 22-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 PANTHER PTHR11373:SF25 1 340 1.1E-84 T 22-04-2016 TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 Pfam PF13286 Phosphohydrolase-associated domain 258 344 5.2E-24 T 22-04-2016 IPR026875 Phosphohydrolase-associated domain TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 Pfam PF01966 HD domain 80 197 6.2E-17 T 22-04-2016 IPR006674 HD domain TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 PANTHER PTHR11373 1 340 1.1E-84 T 22-04-2016 TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 SMART SM00471 76 208 4.9E-13 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 21 347 30.977 T 22-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 SUPERFAMILY SSF109604 33 353 1.07E-79 T 22-04-2016 TRD_RS01950 3faede3ea04f06cec90dab9fefaae066 356 Gene3D G3DSA:1.10.3210.10 42 345 3.0E-74 T 22-04-2016 IPR006674 HD domain TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 Gene3D G3DSA:3.40.190.10 2 89 3.9E-30 T 22-04-2016 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 Pfam PF00800 Prephenate dehydratase 4 184 1.3E-66 T 22-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 PANTHER PTHR21022:SF0 1 275 3.1E-115 T 22-04-2016 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 Gene3D G3DSA:3.30.70.260 187 274 3.4E-28 T 22-04-2016 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 Gene3D G3DSA:3.40.190.10 90 171 7.1E-29 T 22-04-2016 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 221 228 - T 22-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 SUPERFAMILY SSF55021 177 274 7.42E-25 T 22-04-2016 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 Pfam PF01842 ACT domain 200 259 6.9E-7 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 PANTHER PTHR21022 1 275 3.1E-115 T 22-04-2016 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 PIRSF PIRSF001500 1 275 1.6E-84 T 22-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 TRD_RS00455 1337dc1ff7859b51246daa70d1ea7467 285 SUPERFAMILY SSF53850 2 189 6.84E-58 T 22-04-2016 TRD_RS08660 fa6188504eedc178f3e8e660cc67a752 378 Pfam PF06032 Protein of unknown function (DUF917) 8 356 6.6E-132 T 22-04-2016 IPR010318 Protein of unknown function DUF917 TRD_RS08660 fa6188504eedc178f3e8e660cc67a752 378 SUPERFAMILY SSF160991 1 355 9.55E-123 T 22-04-2016 TRD_RS08660 fa6188504eedc178f3e8e660cc67a752 378 Gene3D G3DSA:2.40.390.10 221 348 7.3E-35 T 22-04-2016 IPR024071 Protein of unknown function DUF917, C-terminal TRD_RS08660 fa6188504eedc178f3e8e660cc67a752 378 PANTHER PTHR40138:SF1 1 369 3.4E-117 T 22-04-2016 TRD_RS08660 fa6188504eedc178f3e8e660cc67a752 378 PANTHER PTHR40138 1 369 3.4E-117 T 22-04-2016 TRD_RS08660 fa6188504eedc178f3e8e660cc67a752 378 Gene3D G3DSA:3.40.1610.10 1 220 8.7E-82 T 22-04-2016 IPR027479 Protein of unknown function DUF917, N-terminal TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 Pfam PF13522 Glutamine amidotransferase domain 68 171 2.0E-17 T 22-04-2016 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 Gene3D G3DSA:3.40.50.10490 258 423 2.9E-44 T 22-04-2016 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 Gene3D G3DSA:3.40.50.10490 452 602 2.1E-48 T 22-04-2016 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 SUPERFAMILY SSF53697 259 602 2.34E-82 T 22-04-2016 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 Gene3D G3DSA:3.60.20.10 2 235 5.3E-58 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 602 7.9E-173 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 PANTHER PTHR10937:SF0 1 603 3.7E-214 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 PANTHER PTHR10937 1 603 3.7E-214 T 22-04-2016 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 SUPERFAMILY SSF56235 2 238 1.72E-54 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 Pfam PF01380 SIS domain 461 584 4.2E-19 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 TRD_RS03395 d80f3b37a70ceac5140eeda6ada7d7df 603 Pfam PF01380 SIS domain 302 422 4.4E-22 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 ProSitePatterns PS01215 Mrp family signature. 204 220 - T 22-04-2016 IPR000808 Mrp, conserved site GO:0005524 TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 Hamap MF_02040 Iron-sulfur cluster carrier protein. 94 341 39.84 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 Gene3D G3DSA:3.40.50.300 90 339 7.3E-111 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 PANTHER PTHR23264 1 363 6.5E-170 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 Pfam PF01883 Domain of unknown function DUF59 6 77 1.3E-26 T 22-04-2016 IPR002744 Domain of unknown function DUF59 TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 99 339 7.5E-105 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 SUPERFAMILY SSF117916 1 79 2.06E-24 T 22-04-2016 TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 PANTHER PTHR23264:SF19 1 363 6.5E-170 T 22-04-2016 TRD_RS02435 cb2242d93d5f060a05432b2769338a2c 363 SUPERFAMILY SSF52540 101 345 4.28E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 17 361 70.874 T 22-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 Gene3D G3DSA:3.20.20.70 117 354 4.6E-17 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 15 364 4.2E-124 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 PANTHER PTHR30544 1 369 9.8E-164 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 Pfam PF04055 Radical SAM superfamily 123 286 4.2E-20 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 SUPERFAMILY SSF102114 109 330 2.88E-17 T 22-04-2016 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 PANTHER PTHR30544:SF5 1 369 9.8E-164 T 22-04-2016 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 PIRSF PIRSF006004 12 370 1.2E-134 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 TRD_RS01475 9b7fcc33a52307b1e9f6ea7e68bb5650 370 SMART SM00729 117 332 0.0058 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 TRD_RS05510 39961e1fb45a5f85aa53c19490038fcd 370 PANTHER PTHR28004 10 370 1.1E-111 T 22-04-2016 TRD_RS05510 39961e1fb45a5f85aa53c19490038fcd 370 SMART SM01119 259 353 7.0E-43 T 22-04-2016 IPR026956 D-serine dehydratase-like domain TRD_RS05510 39961e1fb45a5f85aa53c19490038fcd 370 Pfam PF14031 Putative serine dehydratase domain 259 352 6.0E-25 T 22-04-2016 IPR026956 D-serine dehydratase-like domain TRD_RS05510 39961e1fb45a5f85aa53c19490038fcd 370 SUPERFAMILY SSF51419 17 247 3.01E-44 T 22-04-2016 IPR029066 PLP-binding barrel TRD_RS05510 39961e1fb45a5f85aa53c19490038fcd 370 Gene3D G3DSA:3.20.20.10 12 245 9.7E-31 T 22-04-2016 IPR029066 PLP-binding barrel TRD_RS05510 39961e1fb45a5f85aa53c19490038fcd 370 Pfam PF01168 Alanine racemase, N-terminal domain 17 243 7.6E-37 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 TRD_RS05075 f50afcea0d358830e4f8244140bb8594 253 Gene3D G3DSA:3.40.50.150 64 233 7.7E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS05075 f50afcea0d358830e4f8244140bb8594 253 SUPERFAMILY SSF53335 70 232 1.94E-24 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS05075 f50afcea0d358830e4f8244140bb8594 253 PANTHER PTHR14614 6 224 8.1E-29 T 22-04-2016 TRD_RS05075 f50afcea0d358830e4f8244140bb8594 253 Pfam PF13489 Methyltransferase domain 95 223 1.1E-8 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.20.1580.10 708 834 3.2E-56 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.20.1580.10 257 290 1.4E-56 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.20.1580.10 93 131 1.4E-56 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.20.1580.10 417 493 1.4E-56 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 ProSitePatterns PS00211 ABC transporters family signature. 844 858 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.30.1490.20 202 256 1.0E-20 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.30.1490.20 132 155 1.0E-20 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 954 23.03 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:1.10.8.280 292 416 5.6E-39 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 939 0.0 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.40.50.300 835 953 3.5E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.40.50.300 494 611 2.3E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.40.50.300 628 706 3.5E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 Gene3D G3DSA:3.40.50.300 5 53 2.3E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 SUPERFAMILY SSF52540 443 585 8.15E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 SUPERFAMILY SSF52540 11 206 8.15E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 PANTHER PTHR32282:SF2 2 954 0.0 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 PANTHER PTHR32282 2 954 0.0 T 22-04-2016 TRD_RS08145 d8bb54edb8f6f14d7ce4a39bc7d54f76 961 SUPERFAMILY SSF52540 632 927 4.39E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00075 c511d161a7d5f21797bc023b91c6e47c 287 PIRSF PIRSF005054 1 270 1.7E-49 T 22-04-2016 IPR010156 CRISPR-associated protein, Cas6 GO:0016788 TRD_RS00075 c511d161a7d5f21797bc023b91c6e47c 287 Pfam PF01881 CRISPR associated protein Cas6 95 265 3.2E-32 T 22-04-2016 IPR010156 CRISPR-associated protein, Cas6 GO:0016788 TRD_RS00075 c511d161a7d5f21797bc023b91c6e47c 287 PANTHER PTHR36984 208 277 5.8E-34 T 22-04-2016 TRD_RS00075 c511d161a7d5f21797bc023b91c6e47c 287 PANTHER PTHR36984 2 183 5.8E-34 T 22-04-2016 TRD_RS08065 f684d99b9825143b527aac1655c43d42 154 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 36.21 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 TRD_RS08065 f684d99b9825143b527aac1655c43d42 154 SUPERFAMILY SSF69500 1 145 1.31E-57 T 22-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain TRD_RS08065 f684d99b9825143b527aac1655c43d42 154 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 145 1.3E-55 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 TRD_RS08065 f684d99b9825143b527aac1655c43d42 154 Gene3D G3DSA:3.50.80.10 2 145 3.9E-60 T 22-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain TRD_RS08065 f684d99b9825143b527aac1655c43d42 154 PANTHER PTHR10472 2 148 6.4E-79 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 TRD_RS08065 f684d99b9825143b527aac1655c43d42 154 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 1.2E-56 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 TRD_RS01315 aaa204c75d850b97d13a6a226cf72c39 237 PANTHER PTHR18901:SF27 1 228 3.8E-39 T 22-04-2016 TRD_RS01315 aaa204c75d850b97d13a6a226cf72c39 237 Gene3D G3DSA:1.10.150.240 20 77 2.7E-8 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 TRD_RS01315 aaa204c75d850b97d13a6a226cf72c39 237 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 187 3.6E-15 T 22-04-2016 TRD_RS01315 aaa204c75d850b97d13a6a226cf72c39 237 SUPERFAMILY SSF56784 4 227 7.74E-33 T 22-04-2016 IPR023214 HAD-like domain TRD_RS01315 aaa204c75d850b97d13a6a226cf72c39 237 PANTHER PTHR18901 1 228 3.8E-39 T 22-04-2016 TRD_RS01315 aaa204c75d850b97d13a6a226cf72c39 237 Gene3D G3DSA:3.40.50.1000 81 227 5.2E-27 T 22-04-2016 IPR023214 HAD-like domain TRD_RS03530 e910f73f889b81648928de6b63192ee0 328 SUPERFAMILY SSF64182 11 301 6.93E-49 T 22-04-2016 TRD_RS03530 e910f73f889b81648928de6b63192ee0 328 Pfam PF02272 DHHA1 domain 254 306 8.6E-7 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 TRD_RS03530 e910f73f889b81648928de6b63192ee0 328 Pfam PF01368 DHH family 13 157 2.5E-9 T 22-04-2016 IPR001667 DDH domain TRD_RS03530 e910f73f889b81648928de6b63192ee0 328 Gene3D G3DSA:3.90.1640.10 11 197 2.2E-25 T 22-04-2016 TRD_RS04805 287f275e72202ca2c1b19993d5e132f1 232 PANTHER PTHR12993 9 209 3.7E-43 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS04805 287f275e72202ca2c1b19993d5e132f1 232 Pfam PF02585 GlcNAc-PI de-N-acetylase 11 137 5.4E-31 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS04805 287f275e72202ca2c1b19993d5e132f1 232 Gene3D G3DSA:3.40.50.10320 8 229 1.8E-65 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS04805 287f275e72202ca2c1b19993d5e132f1 232 SUPERFAMILY SSF102588 8 228 1.7E-57 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 Pfam PF03725 3' exoribonuclease family, domain 2 163 227 7.1E-11 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 PANTHER PTHR11953 11 240 2.4E-71 T 22-04-2016 TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 10 240 2.7E-102 T 22-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 Hamap MF_00564 Ribonuclease PH [rph]. 7 241 44.221 T 22-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 Pfam PF01138 3' exoribonuclease family, domain 1 16 143 5.8E-19 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 SUPERFAMILY SSF54211 11 186 5.06E-39 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 Gene3D G3DSA:3.30.230.70 12 239 1.4E-29 T 22-04-2016 IPR027408 PNPase/RNase PH domain TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 SUPERFAMILY SSF55666 157 240 3.53E-22 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 TRD_RS01995 3c619584ea42eb639e1bd5952a833edf 243 PANTHER PTHR11953:SF0 11 240 2.4E-71 T 22-04-2016 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 153 41.622 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 Gene3D G3DSA:3.30.420.10 1 155 1.3E-55 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 60 76 2.3E-34 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 2.3E-34 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 106 125 2.3E-34 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 2.3E-34 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 82 98 2.3E-34 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 155 1.2E-35 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 149 3.2E-47 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 SUPERFAMILY SSF53098 2 154 1.44E-43 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 PANTHER PTHR30194 1 161 4.3E-58 T 22-04-2016 TRD_RS03665 a549f91d6b2b655daa24443822b98741 163 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 112 147 - T 22-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 PANTHER PTHR30007 29 275 7.4E-36 T 22-04-2016 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 Gene3D G3DSA:3.20.20.140 29 112 1.7E-34 T 22-04-2016 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 Gene3D G3DSA:3.20.20.140 175 278 1.7E-34 T 22-04-2016 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 SMART SM00481 29 94 3.2E-15 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 PANTHER PTHR30007:SF4 29 275 7.4E-36 T 22-04-2016 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 SUPERFAMILY SSF89550 187 280 8.54E-41 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS05480 af79e0efff5a672e46a3d705dc43b382 321 SUPERFAMILY SSF89550 29 107 8.54E-41 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 SUPERFAMILY SSF52821 8 149 2.49E-31 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 PANTHER PTHR11364 1 293 1.6E-71 T 22-04-2016 TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 Gene3D G3DSA:3.40.250.10 158 282 1.3E-34 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 Gene3D G3DSA:3.40.250.10 8 149 6.9E-35 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 SMART SM00450 11 135 1.8E-15 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 SMART SM00450 161 281 5.3E-21 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 SUPERFAMILY SSF52821 156 286 1.22E-32 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 22-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 Pfam PF00581 Rhodanese-like domain 164 276 8.8E-14 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS02385 6d867ce8589e0355a98eed6c3b791f6e 295 Pfam PF00581 Rhodanese-like domain 13 131 8.2E-15 T 22-04-2016 IPR001763 Rhodanese-like domain TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 PIRSF PIRSF000148 4 350 3.5E-100 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 SMART SM00859 6 130 1.0E-31 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 PANTHER PTHR10174:SF141 78 202 1.1E-96 T 22-04-2016 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 PANTHER PTHR10174 78 202 1.1E-96 T 22-04-2016 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 Gene3D G3DSA:3.40.50.720 3 173 5.8E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 128 1.1E-29 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 PANTHER PTHR10174:SF141 222 350 1.1E-96 T 22-04-2016 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 SUPERFAMILY SSF55347 148 332 1.26E-45 T 22-04-2016 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 159 330 2.0E-36 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 Gene3D G3DSA:3.30.360.10 191 319 2.5E-20 T 22-04-2016 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 PANTHER PTHR10174 222 350 1.1E-96 T 22-04-2016 TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 SUPERFAMILY SSF51735 5 177 4.12E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01695 add0cccc55d481346dbd0d395ad8197f 350 TIGRFAM TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase 6 345 7.6E-135 T 22-04-2016 IPR005676 Aspartate-semialdehyde dehydrogenase, peptidoglycan lacking GO:0004073|GO:0006531|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 SUPERFAMILY SSF53383 11 412 1.46E-129 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 14 416 4.6E-174 T 22-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 Gene3D G3DSA:3.40.640.10 44 293 3.6E-86 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 PANTHER PTHR11601:SF17 13 415 2.5E-191 T 22-04-2016 TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 Pfam PF00266 Aminotransferase class-V 33 404 9.9E-145 T 22-04-2016 IPR000192 Aminotransferase class V domain TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 Gene3D G3DSA:3.90.1150.10 294 410 4.1E-31 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS01750 894da1981c63c72468da6f7bd9af1671 419 PANTHER PTHR11601 13 415 2.5E-191 T 22-04-2016 TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 PANTHER PTHR13794 59 398 3.3E-92 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 PANTHER PTHR13794:SF50 59 398 3.3E-92 T 22-04-2016 TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 SMART SM00922 167 270 3.6E-20 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Gene3D G3DSA:3.20.20.120 153 385 6.7E-74 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Gene3D G3DSA:3.30.390.10 1 152 6.6E-37 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 59 147 1.0E-13 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 Pfam PF13378 Enolase C-terminal domain-like 173 387 1.2E-58 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 SUPERFAMILY SSF51604 135 391 1.05E-70 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 122 147 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 TRD_RS06310 3bdc3d855a5a2ddfd1f1aa310b439f64 399 SUPERFAMILY SSF54826 56 151 2.19E-24 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS03165 892bfa0e1a70b3230f12a1f40188e5d8 272 Gene3D G3DSA:3.40.50.300 84 253 3.1E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03165 892bfa0e1a70b3230f12a1f40188e5d8 272 PANTHER PTHR30050 73 270 1.9E-48 T 22-04-2016 TRD_RS03165 892bfa0e1a70b3230f12a1f40188e5d8 272 PANTHER PTHR30050:SF7 73 270 1.9E-48 T 22-04-2016 TRD_RS03165 892bfa0e1a70b3230f12a1f40188e5d8 272 SMART SM00382 126 257 1.0E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS03165 892bfa0e1a70b3230f12a1f40188e5d8 272 SUPERFAMILY SSF52540 98 268 2.93E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03165 892bfa0e1a70b3230f12a1f40188e5d8 272 Pfam PF01695 IstB-like ATP binding protein 120 246 2.6E-18 T 22-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 30 134 4.2E-14 T 22-04-2016 IPR000014 PAS domain TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 PANTHER PTHR24423:SF383 29 146 1.5E-16 T 22-04-2016 TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 Gene3D G3DSA:3.30.450.20 6 145 1.1E-28 T 22-04-2016 TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 Pfam PF08447 PAS fold 35 116 1.2E-20 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 SMART SM00086 85 127 1.5E-8 T 22-04-2016 IPR001610 PAC motif TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 SUPERFAMILY SSF55785 29 130 1.45E-23 T 22-04-2016 IPR000014 PAS domain TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 SMART SM00091 2 79 1.9E-5 T 22-04-2016 IPR000014 PAS domain TRD_RS09565 558b4de33076861928b8a4acfb7484b1 146 PANTHER PTHR24423 29 146 1.5E-16 T 22-04-2016 TRD_RS04785 fe58e9711417af0990cacef5c7e56ab2 487 Pfam PF04932 O-Antigen ligase 278 404 2.3E-9 T 22-04-2016 IPR007016 O-antigen ligase-related TRD_RS07760 9bc67938af176c2a40638de293e2ac39 572 SUPERFAMILY SSF55797 116 166 4.19E-10 T 22-04-2016 IPR014044 CAP domain TRD_RS07760 9bc67938af176c2a40638de293e2ac39 572 SUPERFAMILY SSF55797 35 86 4.19E-10 T 22-04-2016 IPR014044 CAP domain TRD_RS07760 9bc67938af176c2a40638de293e2ac39 572 Pfam PF00188 Cysteine-rich secretory protein family 42 162 2.2E-9 T 22-04-2016 IPR014044 CAP domain TRD_RS01830 d076854c4588a5d28a395acf54470629 329 SUPERFAMILY SSF161098 106 308 4.19E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01830 d076854c4588a5d28a395acf54470629 329 Gene3D G3DSA:1.10.3720.10 101 324 1.4E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01830 d076854c4588a5d28a395acf54470629 329 PANTHER PTHR30465:SF71 15 328 7.2E-117 T 22-04-2016 TRD_RS01830 d076854c4588a5d28a395acf54470629 329 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 67 1.2E-14 T 22-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain TRD_RS01830 d076854c4588a5d28a395acf54470629 329 PANTHER PTHR30465 15 328 7.2E-117 T 22-04-2016 TRD_RS01830 d076854c4588a5d28a395acf54470629 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 326 2.3E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS13995 d5dda0f791723929206ab9fa63c27665 214 Gene3D G3DSA:2.40.50.140 74 165 2.3E-6 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS13995 d5dda0f791723929206ab9fa63c27665 214 SUPERFAMILY SSF50249 73 155 5.49E-5 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS13995 d5dda0f791723929206ab9fa63c27665 214 PANTHER PTHR32294 1 214 3.2E-36 T 22-04-2016 TRD_RS13995 d5dda0f791723929206ab9fa63c27665 214 PANTHER PTHR32294:SF0 1 214 3.2E-36 T 22-04-2016 TRD_RS13995 d5dda0f791723929206ab9fa63c27665 214 Pfam PF01336 OB-fold nucleic acid binding domain 94 162 5.5E-9 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 TRD_RS02195 249ba924f8ec60b4d037b9747ec00e4a 280 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 27 273 2.1E-50 T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 TRD_RS02195 249ba924f8ec60b4d037b9747ec00e4a 280 SUPERFAMILY SSF52518 8 277 2.03E-89 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02195 249ba924f8ec60b4d037b9747ec00e4a 280 PANTHER PTHR11624 12 279 1.6E-104 T 22-04-2016 IPR033247 Transketolase family TRD_RS02195 249ba924f8ec60b4d037b9747ec00e4a 280 Gene3D G3DSA:3.40.50.970 5 279 4.8E-106 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 127 143 2.8E-17 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 95 110 2.8E-17 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 52 60 2.8E-17 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 PANTHER PTHR33695:SF1 1 160 5.6E-48 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 2 152 16.229 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 TIGRFAM TIGR00077 lspA: signal peptidase II 9 146 6.9E-35 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 Pfam PF01252 Signal peptidase (SPase) II 11 146 2.3E-35 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 TRD_RS04755 c353e4dbd3a64662a89c9c6c453afdb0 169 PANTHER PTHR33695 1 160 5.6E-48 T 22-04-2016 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Pfam PF00483 Nucleotidyl transferase 7 258 6.0E-61 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 379 401 1.6E-4 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 332 359 0.0013 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Gene3D G3DSA:3.90.550.10 6 268 7.0E-82 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Gene3D G3DSA:3.90.550.10 306 340 7.0E-82 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Gene3D G3DSA:2.160.10.10 341 402 1.6E-6 T 22-04-2016 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 PANTHER PTHR22572 5 399 8.7E-176 T 22-04-2016 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 98 106 - T 22-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 SUPERFAMILY SSF53448 4 261 1.15E-83 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 358 8.2E-136 T 22-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 SUPERFAMILY SSF51161 229 407 8.64E-25 T 22-04-2016 IPR011004 Trimeric LpxA-like TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 PANTHER PTHR22572:SF10 5 399 8.7E-176 T 22-04-2016 TRD_RS05885 bfe386b0939b239d45cff0f0b763ba7f 428 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 387 44.676 T 22-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 SUPERFAMILY SSF56801 13 625 6.41E-163 T 22-04-2016 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Pfam PF00501 AMP-binding enzyme 66 505 5.4E-83 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Gene3D G3DSA:3.40.50.980 70 246 2.2E-32 T 22-04-2016 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Pfam PF13193 AMP-binding enzyme C-terminal domain 514 592 4.7E-24 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 PANTHER PTHR24095 16 621 7.9E-231 T 22-04-2016 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Gene3D G3DSA:3.30.300.30 502 604 9.6E-25 T 22-04-2016 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 13 60 2.6E-11 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Gene3D G3DSA:3.40.50.980 247 407 3.2E-23 T 22-04-2016 TRD_RS05185 d8fa89f2b97d273d1ed3a7039f46bd28 653 Gene3D G3DSA:2.30.38.10 416 495 2.7E-14 T 22-04-2016 TRD_RS04280 44983909b7a4d014dd4030652a001b00 309 SUPERFAMILY SSF82171 15 278 1.45E-42 T 22-04-2016 TRD_RS04280 44983909b7a4d014dd4030652a001b00 309 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 161 264 5.0E-8 T 22-04-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 TRD_RS04280 44983909b7a4d014dd4030652a001b00 309 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 36 123 2.2E-7 T 22-04-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 TRD_RS04280 44983909b7a4d014dd4030652a001b00 309 PANTHER PTHR11731 51 265 7.2E-20 T 22-04-2016 TRD_RS04280 44983909b7a4d014dd4030652a001b00 309 Gene3D G3DSA:2.120.10.30 117 278 8.8E-44 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS04280 44983909b7a4d014dd4030652a001b00 309 Gene3D G3DSA:2.130.10.10 11 116 6.5E-15 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS00660 10f77329c99615ccd5451c11fef590a7 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 294 4.7E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00660 10f77329c99615ccd5451c11fef590a7 302 Gene3D G3DSA:1.10.3720.10 24 288 6.1E-59 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00660 10f77329c99615ccd5451c11fef590a7 302 PANTHER PTHR32243 20 301 1.0E-86 T 22-04-2016 TRD_RS00660 10f77329c99615ccd5451c11fef590a7 302 PANTHER PTHR32243:SF11 20 301 1.0E-86 T 22-04-2016 TRD_RS00660 10f77329c99615ccd5451c11fef590a7 302 SUPERFAMILY SSF161098 27 299 8.04E-64 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02735 7ab6e7e9ee895b497952ccfa98edf1e1 252 SUPERFAMILY SSF161098 49 229 7.33E-34 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02735 7ab6e7e9ee895b497952ccfa98edf1e1 252 PANTHER PTHR30151 2 251 1.7E-97 T 22-04-2016 TRD_RS02735 7ab6e7e9ee895b497952ccfa98edf1e1 252 Gene3D G3DSA:1.10.3720.10 52 241 7.3E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02735 7ab6e7e9ee895b497952ccfa98edf1e1 252 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 69 239 9.2E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02735 7ab6e7e9ee895b497952ccfa98edf1e1 252 PANTHER PTHR30151:SF20 2 251 1.7E-97 T 22-04-2016 TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 SUPERFAMILY SSF52540 12 232 3.15E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 PANTHER PTHR24220:SF160 15 229 9.3E-107 T 22-04-2016 TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 Pfam PF00005 ABC transporter 29 171 1.7E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 SMART SM00382 38 242 8.1E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 Gene3D G3DSA:3.40.50.300 8 231 7.8E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS07020 15356b60ae8c60776b950aac75dbc9a4 318 PANTHER PTHR24220 15 229 9.3E-107 T 22-04-2016 TRD_RS03200 514915120d68583199601b0d537e51bb 463 Pfam PF09190 DALR domain 348 406 2.9E-15 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 14 312 1.7E-121 T 22-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 463 37.473 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 TRD_RS03200 514915120d68583199601b0d537e51bb 463 SMART SM00840 348 417 1.1E-15 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 189 207 6.1E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 220 241 6.1E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 6.1E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 6.1E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 Gene3D G3DSA:1.20.120.640 305 401 3.0E-17 T 22-04-2016 TRD_RS03200 514915120d68583199601b0d537e51bb 463 PANTHER PTHR10890 1 462 5.3E-230 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 TRD_RS03200 514915120d68583199601b0d537e51bb 463 Gene3D G3DSA:3.40.50.620 18 304 6.1E-105 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS03200 514915120d68583199601b0d537e51bb 463 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 461 1.1E-155 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 TRD_RS03200 514915120d68583199601b0d537e51bb 463 SUPERFAMILY SSF52374 2 312 4.56E-96 T 22-04-2016 TRD_RS03200 514915120d68583199601b0d537e51bb 463 SUPERFAMILY SSF47323 333 462 2.88E-30 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 Pfam PF00534 Glycosyl transferases group 1 303 454 2.9E-11 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 Gene3D G3DSA:3.40.50.2000 261 464 5.6E-65 T 22-04-2016 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 16 482 6.9E-148 T 22-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 Pfam PF08323 Starch synthase catalytic domain 16 247 4.6E-59 T 22-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 SUPERFAMILY SSF53756 10 486 7.07E-106 T 22-04-2016 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 PANTHER PTHR12526:SF17 16 483 2.7E-121 T 22-04-2016 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 PANTHER PTHR12526 16 483 2.7E-121 T 22-04-2016 TRD_RS05880 ed77fb5003f1b0c25d16f515de761573 496 Hamap MF_00484 Glycogen synthase [glgA]. 14 483 39.766 T 22-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 TRD_RS06985 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 95 119 2.2E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 TRD_RS06985 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 68 90 2.2E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 TRD_RS06985 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 33 51 2.2E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 TRD_RS06985 4572332124abf054a7de9b1e64a09ebe 161 PRINTS PR01837 MgtC/SapB protein signature 14 33 2.2E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 TRD_RS06985 4572332124abf054a7de9b1e64a09ebe 161 Pfam PF02308 MgtC family 11 141 7.6E-39 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 TRD_RS06985 4572332124abf054a7de9b1e64a09ebe 161 PANTHER PTHR33778 1 154 1.5E-49 T 22-04-2016 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 PANTHER PTHR11820:SF82 17 22 9.4E-56 T 22-04-2016 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 PANTHER PTHR11820:SF82 58 264 9.4E-56 T 22-04-2016 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 PANTHER PTHR11820 17 22 9.4E-56 T 22-04-2016 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 PANTHER PTHR11820 58 264 9.4E-56 T 22-04-2016 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 Gene3D G3DSA:3.90.850.10 64 270 6.2E-26 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 SUPERFAMILY SSF56529 57 263 2.88E-27 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS08960 db363ee88e8c37559531df0f46486dcd 271 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 96 264 5.8E-16 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 PANTHER PTHR11451 1 247 2.4E-109 T 22-04-2016 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 SUPERFAMILY SSF64586 202 251 4.71E-11 T 22-04-2016 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 209 250 6.7E-12 T 22-04-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 Pfam PF03129 Anticodon binding domain 83 179 3.6E-18 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 Gene3D G3DSA:3.30.930.10 2 76 1.1E-21 T 22-04-2016 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 SMART SM00946 206 252 2.1E-4 T 22-04-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 SUPERFAMILY SSF55681 2 89 6.63E-19 T 22-04-2016 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 SUPERFAMILY SSF52954 72 197 3.17E-32 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 PANTHER PTHR11451:SF6 1 247 2.4E-109 T 22-04-2016 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 Gene3D G3DSA:3.40.50.800 77 196 2.1E-40 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS11955 512592abee87affc3c5f55d7cdcfd2af 252 Gene3D G3DSA:3.30.110.30 201 251 9.1E-17 T 22-04-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 TRD_RS08515 fb37aef046bd4a4b51273dbd1d3e6a07 665 PANTHER PTHR31616 3 657 3.1E-82 T 22-04-2016 TRD_RS08515 fb37aef046bd4a4b51273dbd1d3e6a07 665 Gene3D G3DSA:1.50.10.10 270 649 1.0E-107 T 22-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 TRD_RS08515 fb37aef046bd4a4b51273dbd1d3e6a07 665 PANTHER PTHR31616:SF0 3 657 3.1E-82 T 22-04-2016 TRD_RS08515 fb37aef046bd4a4b51273dbd1d3e6a07 665 Pfam PF00723 Glycosyl hydrolases family 15 376 584 9.0E-13 T 22-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 TRD_RS08515 fb37aef046bd4a4b51273dbd1d3e6a07 665 SUPERFAMILY SSF48208 237 649 2.04E-106 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 TRD_RS08515 fb37aef046bd4a4b51273dbd1d3e6a07 665 SUPERFAMILY SSF74650 63 191 7.85E-5 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 TRD_RS02645 889902c760d7b22dcd8a4beb4dffca5a 486 Gene3D G3DSA:1.10.10.660 95 156 2.5E-31 T 22-04-2016 IPR024033 Uncharacterised domain, YlbE TRD_RS02645 889902c760d7b22dcd8a4beb4dffca5a 486 Gene3D G3DSA:3.90.1710.10 157 303 3.5E-66 T 22-04-2016 TRD_RS02645 889902c760d7b22dcd8a4beb4dffca5a 486 Pfam PF06545 Protein of unknown function (DUF1116) 143 357 1.7E-98 T 22-04-2016 IPR009499 Protein of unknown function DUF1116 TRD_RS02645 889902c760d7b22dcd8a4beb4dffca5a 486 Gene3D G3DSA:3.90.1700.10 305 470 2.8E-76 T 22-04-2016 TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 Pfam PF02163 Peptidase family M50 136 196 1.1E-6 T 22-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 Pfam PF00571 CBS domain 245 297 4.4E-15 T 22-04-2016 IPR000644 CBS domain TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 Pfam PF00571 CBS domain 307 363 6.5E-12 T 22-04-2016 IPR000644 CBS domain TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 PANTHER PTHR11911 245 362 2.7E-31 T 22-04-2016 TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 PIRSF PIRSF006404 1 371 3.9E-105 T 22-04-2016 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 Gene3D G3DSA:3.20.20.70 244 364 6.3E-33 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 SUPERFAMILY SSF54631 235 363 1.11E-31 T 22-04-2016 TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 SMART SM00116 316 363 2.8E-10 T 22-04-2016 IPR000644 CBS domain TRD_RS08045 0f11b722b51e507ec7552a905ed84f01 389 SMART SM00116 252 299 1.6E-11 T 22-04-2016 IPR000644 CBS domain TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 PANTHER PTHR13696:SF1 3 256 2.3E-99 T 22-04-2016 TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 SUPERFAMILY SSF52540 9 255 1.54E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 10 264 1.6E-121 T 22-04-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 PIRSF PIRSF003092 1 270 2.6E-88 T 22-04-2016 IPR025501 ATP binding protein MinD TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 12 215 1.8E-34 T 22-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 Gene3D G3DSA:3.40.50.300 8 246 8.3E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS08990 40570d8bb2cbda61690e61fa99ba94b9 274 PANTHER PTHR13696 3 256 2.3E-99 T 22-04-2016 TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 Gene3D G3DSA:3.60.21.10 194 433 1.0E-50 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 PRINTS PR00114 Serine/threonine phosphatase family signature 243 270 2.5E-6 T 22-04-2016 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04660+3.1.3.16 TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 PRINTS PR00114 Serine/threonine phosphatase family signature 196 223 2.5E-6 T 22-04-2016 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04660+3.1.3.16 TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 SUPERFAMILY SSF56300 192 423 4.18E-44 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 Gene3D G3DSA:3.40.50.300 25 159 7.4E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 Pfam PF00149 Calcineurin-like phosphoesterase 196 395 1.5E-11 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 Pfam PF13671 AAA domain 25 153 8.5E-23 T 22-04-2016 TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 SUPERFAMILY SSF52540 18 154 7.14E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 PANTHER PTHR24032 184 224 1.9E-44 T 22-04-2016 TRD_RS04305 6a47194b3949014787ffe1e437024dcb 493 PANTHER PTHR24032 242 430 1.9E-44 T 22-04-2016 TRD_RS02500 62b8c8fa17c1bec600b699c002840c32 221 SUPERFAMILY SSF48613 2 214 8.73E-70 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 TRD_RS02500 62b8c8fa17c1bec600b699c002840c32 221 PANTHER PTHR20858:SF20 4 180 1.1E-60 T 22-04-2016 TRD_RS02500 62b8c8fa17c1bec600b699c002840c32 221 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 13 215 6.0E-48 T 22-04-2016 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356|UniPathway: UPA00060 TRD_RS02500 62b8c8fa17c1bec600b699c002840c32 221 PANTHER PTHR20858 4 180 1.1E-60 T 22-04-2016 TRD_RS02500 62b8c8fa17c1bec600b699c002840c32 221 Pfam PF03070 TENA/THI-4/PQQC family 9 215 3.4E-45 T 22-04-2016 IPR004305 Thiaminase-2/PQQC TRD_RS02500 62b8c8fa17c1bec600b699c002840c32 221 Gene3D G3DSA:1.20.910.10 2 220 3.5E-75 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 TRD_RS00190 2ff708776d81bde79b98893526b6e5a8 178 PANTHER PTHR13061 2 170 3.7E-63 T 22-04-2016 TRD_RS00190 2ff708776d81bde79b98893526b6e5a8 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 123 1.0E-4 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS00190 2ff708776d81bde79b98893526b6e5a8 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 47 3.4E-4 T 22-04-2016 IPR001451 Hexapeptide repeat TRD_RS00190 2ff708776d81bde79b98893526b6e5a8 178 Gene3D G3DSA:2.160.10.10 8 171 2.3E-46 T 22-04-2016 TRD_RS00190 2ff708776d81bde79b98893526b6e5a8 178 SUPERFAMILY SSF51161 7 171 6.1E-46 T 22-04-2016 IPR011004 Trimeric LpxA-like TRD_RS01770 ba03a1ac8611c397565e5eddd6aadaa1 143 PANTHER PTHR33202 4 132 8.9E-39 T 22-04-2016 TRD_RS01770 ba03a1ac8611c397565e5eddd6aadaa1 143 PANTHER PTHR33202:SF7 4 132 8.9E-39 T 22-04-2016 TRD_RS01770 ba03a1ac8611c397565e5eddd6aadaa1 143 SUPERFAMILY SSF46785 4 125 2.98E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01770 ba03a1ac8611c397565e5eddd6aadaa1 143 Gene3D G3DSA:1.10.10.10 4 73 1.3E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01770 ba03a1ac8611c397565e5eddd6aadaa1 143 Pfam PF01475 Ferric uptake regulator family 4 117 3.3E-30 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 407 4.0E-172 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 Gene3D G3DSA:3.40.47.10 262 408 4.9E-62 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 243 9.4E-52 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 PANTHER PTHR11712 1 407 3.5E-181 T 22-04-2016 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 SUPERFAMILY SSF53901 1 250 3.76E-71 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 367 2.1E-35 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 PIRSF PIRSF000447 1 409 1.5E-158 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 SUPERFAMILY SSF53901 213 408 1.54E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 SMART SM00825 Beta-ketoacyl synthase 4 407 2.5E-14 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain TRD_RS03650 b9f62e94859936f18346f822f51caa94 409 Gene3D G3DSA:3.40.47.10 1 258 2.2E-68 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 TRD_RS04740 7020a0248b32ca3c434928cdde4b1e71 541 PANTHER PTHR33393 369 523 2.8E-14 T 22-04-2016 TRD_RS04740 7020a0248b32ca3c434928cdde4b1e71 541 TIGRFAM TIGR04275 beta_prop_Msarc: beta propeller repeat 173 211 8.0E-14 T 22-04-2016 IPR027618 Beta propeller repeat, Msarc-type TRD_RS04740 7020a0248b32ca3c434928cdde4b1e71 541 PANTHER PTHR33393:SF4 369 523 2.8E-14 T 22-04-2016 TRD_RS04740 7020a0248b32ca3c434928cdde4b1e71 541 Gene3D G3DSA:2.120.10.30 73 309 1.9E-20 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS04740 7020a0248b32ca3c434928cdde4b1e71 541 SUPERFAMILY SSF69304 62 309 4.84E-21 T 22-04-2016 TRD_RS03065 1fc03151f7b9d51369dcdc54fbe0d57d 74 SUPERFAMILY SSF54913 9 71 3.56E-6 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS03065 1fc03151f7b9d51369dcdc54fbe0d57d 74 Pfam PF09413 Putative prokaryotic signal transducing protein 13 71 2.1E-7 T 22-04-2016 IPR018551 Domain of unknown function DUF2007 TRD_RS06900 8968e3456a5527ae4dd4014e034bd77b 356 Pfam PF13166 AAA domain 51 201 1.1E-10 T 22-04-2016 IPR026866 P-loop containing protein CR006/PrrC TRD_RS06900 8968e3456a5527ae4dd4014e034bd77b 356 SUPERFAMILY SSF57997 51 207 7.85E-13 T 22-04-2016 TRD_RS06900 8968e3456a5527ae4dd4014e034bd77b 356 Gene3D G3DSA:1.10.287.370 86 122 4.1E-4 T 22-04-2016 IPR009053 Prefoldin TRD_RS06900 8968e3456a5527ae4dd4014e034bd77b 356 PANTHER PTHR18937 8 205 5.3E-13 T 22-04-2016 TRD_RS06900 8968e3456a5527ae4dd4014e034bd77b 356 Gene3D G3DSA:1.20.5.340 123 175 4.4E-4 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 Gene3D G3DSA:3.30.420.40 254 473 2.2E-31 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 217 2.0E-33 T 22-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 SUPERFAMILY SSF53067 7 250 2.41E-46 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 PANTHER PTHR10196:SF41 4 486 4.0E-97 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 SUPERFAMILY SSF53067 249 484 1.42E-35 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 Gene3D G3DSA:3.30.420.40 4 247 1.2E-42 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 PANTHER PTHR10196 4 486 4.0E-97 T 22-04-2016 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 437 4.3E-18 T 22-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 TRD_RS06215 787b3aee7db4c5771779f940b1aae615 494 PIRSF PIRSF000538 5 493 1.2E-75 T 22-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 132 218 1.6E-4 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 SMART SM00382 128 284 2.2E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 Gene3D G3DSA:3.30.1370.50 502 559 1.8E-8 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 Gene3D G3DSA:3.40.50.300 122 253 1.6E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 SMART SM00393 476 558 2.8E-6 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 SUPERFAMILY SSF82708 509 557 2.55E-8 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 PANTHER PTHR20953:SF4 3 483 5.7E-165 T 22-04-2016 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 PANTHER PTHR20953 3 483 5.7E-165 T 22-04-2016 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 Pfam PF01424 R3H domain 503 557 5.5E-9 T 22-04-2016 IPR001374 R3H domain GO:0003676 TRD_RS00980 c311d2287064429d07f2a0c83375afc8 562 SUPERFAMILY SSF52540 29 273 1.36E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 Pfam PF00005 ABC transporter 367 513 1.5E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 SUPERFAMILY SSF52540 349 585 1.71E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 PANTHER PTHR24220 352 588 3.8E-103 T 22-04-2016 TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 Gene3D G3DSA:3.40.50.300 348 582 7.0E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 562 584 1.9E-6 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 SMART SM00382 375 570 1.3E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 Pfam PF02653 Branched-chain amino acid transport system / permease component 34 283 4.6E-23 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 TRD_RS06605 8b3ca65b0a2afc01dbbcc57bcc8d3aac 589 PANTHER PTHR24220:SF358 352 588 3.8E-103 T 22-04-2016 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 223 1.7E-82 T 22-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 PANTHER PTHR11921:SF15 1 229 1.9E-107 T 22-04-2016 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 Gene3D G3DSA:3.10.20.30 1 102 5.9E-40 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 SUPERFAMILY SSF54292 1 102 2.85E-30 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 107 6.4E-37 T 22-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 Gene3D G3DSA:1.10.1060.10 103 227 1.9E-39 T 22-04-2016 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 Pfam PF13237 4Fe-4S dicluster domain 138 210 2.8E-11 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 SUPERFAMILY SSF46548 103 227 5.76E-33 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 PANTHER PTHR11921 1 229 1.9E-107 T 22-04-2016 TRD_RS01530 4b99789517c2c6b9b1cf38ec54cad2d7 231 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS01060 ec1ff3a39e4e729c899699fd09329abd 421 SMART SM00382 160 342 4.3E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01060 ec1ff3a39e4e729c899699fd09329abd 421 Gene3D G3DSA:3.40.50.300 147 185 2.2E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01060 ec1ff3a39e4e729c899699fd09329abd 421 Gene3D G3DSA:3.40.50.300 227 369 2.2E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01060 ec1ff3a39e4e729c899699fd09329abd 421 SUPERFAMILY SSF52540 135 414 1.57E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01195 32eeca13c1f0365de0bf707592101eb9 511 Gene3D G3DSA:3.40.190.10 52 183 6.7E-22 T 22-04-2016 TRD_RS01195 32eeca13c1f0365de0bf707592101eb9 511 Pfam PF01547 Bacterial extracellular solute-binding protein 61 394 4.2E-36 T 22-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 TRD_RS01195 32eeca13c1f0365de0bf707592101eb9 511 PANTHER PTHR12203 46 480 1.0E-63 T 22-04-2016 TRD_RS01195 32eeca13c1f0365de0bf707592101eb9 511 Gene3D G3DSA:3.40.190.10 184 415 9.3E-44 T 22-04-2016 TRD_RS01195 32eeca13c1f0365de0bf707592101eb9 511 PANTHER PTHR12203:SF13 46 480 1.0E-63 T 22-04-2016 TRD_RS01195 32eeca13c1f0365de0bf707592101eb9 511 SUPERFAMILY SSF53850 24 502 8.15E-66 T 22-04-2016 TRD_RS00910 c11f79938841fa87534d3654c4910a88 112 Gene3D G3DSA:3.30.70.120 2 110 2.0E-11 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal TRD_RS00910 c11f79938841fa87534d3654c4910a88 112 PANTHER PTHR38456 2 109 2.0E-33 T 22-04-2016 TRD_RS00910 c11f79938841fa87534d3654c4910a88 112 SUPERFAMILY SSF54913 2 110 1.74E-9 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS00910 c11f79938841fa87534d3654c4910a88 112 Pfam PF06153 Cyclic-di-AMP receptor 1 108 3.7E-32 T 22-04-2016 IPR010375 Cyclic-di-AMP receptor TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 PIRSF PIRSF006648 1 251 1.2E-59 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 6.6E-12 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 PRINTS PR00164 ABC-2 type transport system membrane protein signature 175 194 6.6E-12 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 PRINTS PR00164 ABC-2 type transport system membrane protein signature 138 162 6.6E-12 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 PRINTS PR00164 ABC-2 type transport system membrane protein signature 195 214 6.6E-12 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 PANTHER PTHR30294 6 249 4.0E-47 T 22-04-2016 TRD_RS04965 89fbb80634d24b7d6fa121f1f8177b5d 252 Pfam PF01061 ABC-2 type transporter 17 217 1.8E-36 T 22-04-2016 IPR013525 ABC-2 type transporter GO:0016020 TRD_RS00060 35a7221255e768ebc3155305e4e81382 308 PANTHER PTHR24220 8 237 4.6E-99 T 22-04-2016 TRD_RS00060 35a7221255e768ebc3155305e4e81382 308 SUPERFAMILY SSF52540 5 222 7.76E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00060 35a7221255e768ebc3155305e4e81382 308 SMART SM00382 31 208 9.8E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS00060 35a7221255e768ebc3155305e4e81382 308 Gene3D G3DSA:3.40.50.300 5 233 7.0E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00060 35a7221255e768ebc3155305e4e81382 308 Pfam PF00005 ABC transporter 24 161 9.1E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS00060 35a7221255e768ebc3155305e4e81382 308 PANTHER PTHR24220:SF160 8 237 4.6E-99 T 22-04-2016 TRD_RS13600 167332b01be66301003af3fcf1ab5925 523 PANTHER PTHR39419 1 290 5.0E-39 T 22-04-2016 IPR007354 Carotene biosynthesis associated membrane protein TRD_RS13600 167332b01be66301003af3fcf1ab5925 523 Pfam PF04240 Protein of unknown function (DUF422) 52 262 2.1E-65 T 22-04-2016 IPR007354 Carotene biosynthesis associated membrane protein TRD_RS13600 167332b01be66301003af3fcf1ab5925 523 SUPERFAMILY SSF69593 296 488 1.83E-7 T 22-04-2016 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 SUPERFAMILY SSF89000 287 335 7.85E-17 T 22-04-2016 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 Pfam PF07836 DmpG-like communication domain 273 332 1.2E-28 T 22-04-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 Pfam PF00682 HMGL-like 8 263 1.2E-64 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 7 335 6.6E-169 T 22-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 275 335 2.0E-22 T 22-04-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 PANTHER PTHR10277:SF3 6 335 4.7E-126 T 22-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 PANTHER PTHR10277 6 335 4.7E-126 T 22-04-2016 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 Gene3D G3DSA:3.20.20.70 5 263 6.5E-60 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 Gene3D G3DSA:1.10.8.60 275 336 2.9E-29 T 22-04-2016 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 342 186.066 T 22-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 TRD_RS06540 ec9fed9edbebebd264cb86c08d26d658 356 SUPERFAMILY SSF51569 5 274 1.7E-71 T 22-04-2016 TRD_RS06835 a33f0c8406008b790cfb381c9d8831ed 198 PANTHER PTHR35458:SF2 5 195 2.4E-47 T 22-04-2016 TRD_RS06835 a33f0c8406008b790cfb381c9d8831ed 198 PANTHER PTHR35458 5 195 2.4E-47 T 22-04-2016 TRD_RS06835 a33f0c8406008b790cfb381c9d8831ed 198 Pfam PF01936 NYN domain 9 157 1.1E-28 T 22-04-2016 IPR021139 NYN domain, limkain-b1-type TRD_RS06835 a33f0c8406008b790cfb381c9d8831ed 198 Gene3D G3DSA:3.40.50.1010 7 157 8.6E-38 T 22-04-2016 IPR029060 PIN domain-like TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 PANTHER PTHR18895 2 278 1.1E-64 T 22-04-2016 TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 Gene3D G3DSA:1.10.8.10 3 86 1.4E-28 T 22-04-2016 TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 Gene3D G3DSA:3.40.50.150 88 277 1.2E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 279 38.004 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 Pfam PF13847 Methyltransferase domain 113 240 1.3E-8 T 22-04-2016 IPR025714 Methyltransferase domain TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 3 275 1.9E-48 T 22-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 PANTHER PTHR18895:SF64 2 278 1.1E-64 T 22-04-2016 TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 SUPERFAMILY SSF53335 9 253 1.37E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00430 68547fb8794dc4fca08bc697c6cc2e11 283 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 26 275 4.6E-63 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 PANTHER PTHR12220 1 136 4.4E-71 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 SUPERFAMILY SSF54686 1 137 2.49E-55 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 24 36 4.3E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 88 117 4.3E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 42 53 4.3E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 PRINTS PR00060 Ribosomal protein L16 signature 58 87 4.3E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 Gene3D G3DSA:3.90.1170.10 23 136 7.8E-53 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.929 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 8.8E-59 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 TRD_RS04490 9ea1293dc51684c992c7fa613b87fc4f 146 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.7E-47 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 TRD_RS01285 e986ea49d1f0f57ba8b447ec68ca5b82 987 PANTHER PTHR30489 27 221 8.1E-45 T 22-04-2016 TRD_RS01285 e986ea49d1f0f57ba8b447ec68ca5b82 987 PANTHER PTHR30489 631 987 8.1E-45 T 22-04-2016 TRD_RS01285 e986ea49d1f0f57ba8b447ec68ca5b82 987 PANTHER PTHR30489 287 582 8.1E-45 T 22-04-2016 TRD_RS01285 e986ea49d1f0f57ba8b447ec68ca5b82 987 Pfam PF12704 MacB-like periplasmic core domain 52 265 1.1E-12 T 22-04-2016 IPR025857 MacB-like periplasmic core domain TRD_RS01285 e986ea49d1f0f57ba8b447ec68ca5b82 987 Pfam PF02687 FtsX-like permease family 860 979 4.9E-15 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 TRD_RS01285 e986ea49d1f0f57ba8b447ec68ca5b82 987 Pfam PF02687 FtsX-like permease family 316 435 3.2E-17 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 TRD_RS08195 2273df7ac90a6b698143b489a76cefca 243 Pfam PF04402 Protein of unknown function (DUF541) 45 239 4.3E-41 T 22-04-2016 IPR007497 Protein of unknown function DUF541 TRD_RS08195 2273df7ac90a6b698143b489a76cefca 243 PANTHER PTHR34387 3 243 3.1E-40 T 22-04-2016 TRD_RS08195 2273df7ac90a6b698143b489a76cefca 243 PANTHER PTHR34387:SF1 3 243 3.1E-40 T 22-04-2016 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 Pfam PF02887 Pyruvate kinase, alpha/beta domain 362 474 2.2E-21 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF50800 81 170 6.45E-15 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF52935 329 477 1.27E-28 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:3.20.20.60 11 82 5.3E-87 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:3.20.20.60 175 331 5.3E-87 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PANTHER PTHR11817 9 463 1.2E-160 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 ProSitePatterns PS00110 Pyruvate kinase active site signature. 221 233 - T 22-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 11 478 7.1E-137 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:2.40.33.10 83 170 3.6E-17 T 22-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 Gene3D G3DSA:3.40.1380.20 332 475 7.1E-36 T 22-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 Pfam PF00224 Pyruvate kinase, barrel domain 11 346 2.1E-95 T 22-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF51621 9 84 4.57E-86 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 SUPERFAMILY SSF51621 174 345 4.57E-86 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 275 299 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 193 207 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 250 274 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 223 249 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 319 335 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 300 318 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS08095 be5abb1cb5134605b2edfc13f41204b1 479 PRINTS PR01050 Pyruvate kinase family signature 68 84 2.6E-54 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 SUPERFAMILY SSF53850 78 567 1.81E-104 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 123 486 6.1E-64 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 Gene3D G3DSA:3.90.76.10 90 256 1.1E-41 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 PANTHER PTHR30290 6 50 1.2E-112 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 PANTHER PTHR30290 78 573 1.2E-112 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 Gene3D G3DSA:3.40.190.10 257 354 1.9E-19 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 PIRSF PIRSF002741 50 570 1.0E-76 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 Gene3D G3DSA:3.10.105.10 355 536 2.9E-37 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 PANTHER PTHR30290:SF10 6 50 1.2E-112 T 22-04-2016 TRD_RS01115 3e76ca0ea9c1342c61830a74442cad4e 573 PANTHER PTHR30290:SF10 78 573 1.2E-112 T 22-04-2016 TRD_RS02185 1c5310abf560786f0295a87db679a8c9 327 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 4 293 2.3E-22 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS05065 665cab3886ecf614d54ff7b14cb5e527 420 Gene3D G3DSA:1.20.1250.20 214 395 3.8E-19 T 22-04-2016 TRD_RS05065 665cab3886ecf614d54ff7b14cb5e527 420 Gene3D G3DSA:1.20.1250.20 13 200 2.0E-23 T 22-04-2016 TRD_RS05065 665cab3886ecf614d54ff7b14cb5e527 420 SUPERFAMILY SSF103473 8 396 2.88E-52 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS05065 665cab3886ecf614d54ff7b14cb5e527 420 PANTHER PTHR11360:SF115 9 399 4.8E-64 T 22-04-2016 TRD_RS05065 665cab3886ecf614d54ff7b14cb5e527 420 Pfam PF07690 Major Facilitator Superfamily 26 241 6.3E-22 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS05065 665cab3886ecf614d54ff7b14cb5e527 420 PANTHER PTHR11360 9 399 4.8E-64 T 22-04-2016 TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 Pfam PF13692 Glycosyl transferases group 1 223 358 4.4E-28 T 22-04-2016 TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 PANTHER PTHR12526 76 392 9.5E-31 T 22-04-2016 TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 PANTHER PTHR12526:SF141 76 392 9.5E-31 T 22-04-2016 TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 PANTHER PTHR12526:SF141 2 59 9.5E-31 T 22-04-2016 TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 SUPERFAMILY SSF53756 3 394 1.57E-44 T 22-04-2016 TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 Pfam PF13579 Glycosyl transferase 4-like domain 16 205 1.0E-27 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS02080 c3b29a2fd8d2d815a054ee0cad0f13d7 401 PANTHER PTHR12526 2 59 9.5E-31 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF50447 185 291 7.78E-22 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PANTHER PTHR23115 400 599 3.4E-277 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PANTHER PTHR23115 1 376 3.4E-277 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF00679 Elongation factor G C-terminus 402 488 1.1E-20 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:2.40.30.10 197 292 4.3E-23 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 2.5E-53 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PANTHER PTHR23115:SF175 400 599 3.4E-277 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PANTHER PTHR23115:SF175 1 376 3.4E-277 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF54980 402 497 4.17E-23 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 178 8.4E-19 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF52540 1 217 5.01E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF03144 Elongation factor Tu domain 2 208 278 1.6E-10 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 SMART SM00838 401 489 0.0024 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Pfam PF06421 GTP-binding protein LepA C-terminus 491 597 7.6E-50 T 22-04-2016 IPR013842 GTP-binding protein LepA, C-terminal TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 7.4E-286 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.30.70.240 404 492 2.9E-19 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.30.70.870 294 372 8.8E-26 T 22-04-2016 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Gene3D G3DSA:3.40.50.300 1 196 6.9E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 SUPERFAMILY SSF54980 295 373 1.08E-18 T 22-04-2016 IPR009022 Elongation factor G, III-V domain TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 PRINTS PR00315 GTP-binding elongation factor signature 52 60 1.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 TRD_RS03905 d8108ecbc6b383a844c00f664fde6bf1 608 Hamap MF_00071 Elongation factor 4 [lepA]. 1 601 286.703 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 TRD_RS08080 1c3d0b68502494e2a84a7c6d7e5a7353 377 Gene3D G3DSA:3.40.50.1010 181 306 3.8E-20 T 22-04-2016 IPR029060 PIN domain-like TRD_RS08080 1c3d0b68502494e2a84a7c6d7e5a7353 377 PANTHER PTHR11603 165 376 1.3E-57 T 22-04-2016 TRD_RS08080 1c3d0b68502494e2a84a7c6d7e5a7353 377 PANTHER PTHR11603:SF147 165 376 1.3E-57 T 22-04-2016 TRD_RS08080 1c3d0b68502494e2a84a7c6d7e5a7353 377 SUPERFAMILY SSF88723 180 304 6.17E-18 T 22-04-2016 IPR029060 PIN domain-like TRD_RS08080 1c3d0b68502494e2a84a7c6d7e5a7353 377 SMART SM00670 179 285 1.3E-5 T 22-04-2016 IPR002716 PIN domain TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 Gene3D G3DSA:2.40.30.90 171 266 1.4E-21 T 22-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 PANTHER PTHR35092 8 270 3.0E-82 T 22-04-2016 TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 11 263 5.1E-77 T 22-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 PIRSF PIRSF006779 6 268 6.8E-69 T 22-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 SUPERFAMILY SSF101852 173 265 1.28E-19 T 22-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 PANTHER PTHR35092:SF1 8 270 3.0E-82 T 22-04-2016 TRD_RS01655 dbff43331c8f8db4128225d6ad30416f 270 SUPERFAMILY SSF102522 9 168 4.32E-54 T 22-04-2016 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal TRD_RS01850 8ca36e65099b6b74246ea39e7eccd6e2 208 PANTHER PTHR20857 1 204 1.5E-48 T 22-04-2016 TRD_RS01850 8ca36e65099b6b74246ea39e7eccd6e2 208 SUPERFAMILY SSF51391 2 202 1.31E-55 T 22-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01850 8ca36e65099b6b74246ea39e7eccd6e2 208 Pfam PF02581 Thiamine monophosphate synthase/TENI 6 185 5.5E-47 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01850 8ca36e65099b6b74246ea39e7eccd6e2 208 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 5 197 2.2E-44 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01850 8ca36e65099b6b74246ea39e7eccd6e2 208 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 3 203 21.485 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 TRD_RS01850 8ca36e65099b6b74246ea39e7eccd6e2 208 Gene3D G3DSA:3.20.20.70 4 204 4.4E-60 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 SMART SM00926 225 279 4.7E-5 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF12838 4Fe-4S dicluster domain 154 212 2.4E-6 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.10.20.30 6 62 1.2E-7 T 22-04-2016 IPR012675 Beta-grasp domain TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 SUPERFAMILY SSF53706 218 756 1.24E-110 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 SUPERFAMILY SSF54862 143 214 3.35E-14 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 92 130 9.7E-15 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 SUPERFAMILY SSF54292 10 132 1.11E-31 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 PANTHER PTHR11615 11 288 9.5E-105 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 PANTHER PTHR11615 426 745 9.5E-105 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 107 119 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 39 56 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF00384 Molybdopterin oxidoreductase 288 717 1.7E-30 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.30.70.20 205 234 9.4E-5 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.40.50.740 538 562 7.8E-57 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.40.50.740 604 753 7.8E-57 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.40.50.740 282 350 7.8E-57 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:2.20.25.90 235 280 5.9E-11 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 PANTHER PTHR11615:SF38 11 288 9.5E-105 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 PANTHER PTHR11615:SF38 426 745 9.5E-105 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.30.70.20 145 204 6.7E-12 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Gene3D G3DSA:3.40.228.10 359 537 1.2E-22 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 227 278 2.0E-9 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 8 85 7.2E-19 T 22-04-2016 TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS06885 db66dc948e4e824563bfb479ed31edc7 811 SMART SM00929 92 132 2.8E-14 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 TRD_RS01805 1eaed877585429b5fca518d7939caa86 279 Gene3D G3DSA:3.20.20.370 3 265 2.6E-62 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 TRD_RS01805 1eaed877585429b5fca518d7939caa86 279 SUPERFAMILY SSF88713 2 265 4.65E-56 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 TRD_RS01805 1eaed877585429b5fca518d7939caa86 279 PANTHER PTHR10587 54 158 3.5E-25 T 22-04-2016 TRD_RS01805 1eaed877585429b5fca518d7939caa86 279 Pfam PF01522 Polysaccharide deacetylase 54 153 1.7E-21 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 TRD_RS06950 23a6124a6d9a76557bba6663bff1ab44 427 ProSitePatterns PS00216 Sugar transport proteins signature 1. 77 94 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 TRD_RS06950 23a6124a6d9a76557bba6663bff1ab44 427 PANTHER PTHR23501 15 427 2.7E-49 T 22-04-2016 TRD_RS06950 23a6124a6d9a76557bba6663bff1ab44 427 SUPERFAMILY SSF103473 15 408 6.15E-71 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS06950 23a6124a6d9a76557bba6663bff1ab44 427 Gene3D G3DSA:1.20.1250.20 225 407 2.6E-28 T 22-04-2016 TRD_RS06950 23a6124a6d9a76557bba6663bff1ab44 427 Gene3D G3DSA:1.20.1250.20 21 206 2.7E-38 T 22-04-2016 TRD_RS06950 23a6124a6d9a76557bba6663bff1ab44 427 Pfam PF07690 Major Facilitator Superfamily 31 253 8.4E-39 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 PANTHER PTHR24220 12 238 2.8E-102 T 22-04-2016 TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 Pfam PF00005 ABC transporter 32 169 1.1E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 SUPERFAMILY SSF52540 11 235 1.06E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 SMART SM00382 39 220 6.9E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 Gene3D G3DSA:3.40.50.300 6 229 1.6E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS02740 9b17457b1b6a9aedfe162ba7820eb7f5 268 PANTHER PTHR24220:SF14 12 238 2.8E-102 T 22-04-2016 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 SUPERFAMILY SSF52016 373 551 1.57E-59 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 551 4.9E-209 T 22-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 SUPERFAMILY SSF143975 1 372 1.7E-125 T 22-04-2016 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 PANTHER PTHR21000 2 549 5.0E-289 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 119 129 - T 22-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 PANTHER PTHR21000:SF5 2 549 5.0E-289 T 22-04-2016 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 459 470 - T 22-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 551 44.92 T 22-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS02940 48b690da35b326a987c40e353f3ae833 556 Pfam PF00920 Dehydratase family 31 548 1.7E-204 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 335 2.8E-121 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 SUPERFAMILY SSF53067 248 330 4.73E-43 T 22-04-2016 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 SUPERFAMILY SSF53067 2 220 4.73E-43 T 22-04-2016 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 Pfam PF00814 Glycoprotease family 24 329 2.4E-97 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 329 9.3E-101 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 354 62.191 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 5.7E-44 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 289 298 5.7E-44 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 5.7E-44 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 5.7E-44 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 160 181 5.7E-44 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PANTHER PTHR11735:SF6 1 354 4.2E-147 T 22-04-2016 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 PANTHER PTHR11735 1 354 4.2E-147 T 22-04-2016 TRD_RS00855 ffcc2a70d520289942973939c17b97ea 365 Gene3D G3DSA:3.30.420.40 2 165 8.8E-49 T 22-04-2016 TRD_RS13500 95e56a0e564399613a09abc2fc96a294 575 SUPERFAMILY SSF101898 126 222 5.75E-6 T 22-04-2016 TRD_RS13500 95e56a0e564399613a09abc2fc96a294 575 SUPERFAMILY SSF101898 264 355 5.75E-6 T 22-04-2016 TRD_RS13500 95e56a0e564399613a09abc2fc96a294 575 Gene3D G3DSA:2.120.10.30 124 191 2.4E-4 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS13500 95e56a0e564399613a09abc2fc96a294 575 Gene3D G3DSA:2.120.10.30 241 344 2.4E-4 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 PANTHER PTHR11908 593 775 0.0 T 22-04-2016 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 PANTHER PTHR11908 5 575 0.0 T 22-04-2016 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.30.365.10 190 297 3.1E-40 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 SUPERFAMILY SSF56003 138 772 6.8E-207 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.30.365.10 467 621 2.2E-50 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 163 708 1.2E-183 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 PANTHER PTHR11908:SF76 593 775 0.0 T 22-04-2016 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 PANTHER PTHR11908:SF76 5 575 0.0 T 22-04-2016 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.90.1170.50 5 134 1.2E-42 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 SUPERFAMILY SSF54665 5 168 2.22E-44 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 SMART SM01008 21 146 7.1E-47 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 146 2.7E-27 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.30.365.10 135 189 5.7E-45 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.30.365.10 299 372 5.7E-45 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.30.365.10 375 466 3.2E-65 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS08630 8063bf61148fdf29f33379df7ed371ba 776 Gene3D G3DSA:3.30.365.10 623 772 3.2E-65 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 TRD_RS13565 82eaf5bab6b9156568af162695c7bb47 206 Gene3D G3DSA:3.40.30.10 15 205 1.2E-43 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS13565 82eaf5bab6b9156568af162695c7bb47 206 Pfam PF02630 SCO1/SenC 48 182 2.1E-26 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC TRD_RS13565 82eaf5bab6b9156568af162695c7bb47 206 PANTHER PTHR12151:SF0 45 206 5.5E-42 T 22-04-2016 TRD_RS13565 82eaf5bab6b9156568af162695c7bb47 206 PANTHER PTHR12151 45 206 5.5E-42 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC TRD_RS13565 82eaf5bab6b9156568af162695c7bb47 206 SUPERFAMILY SSF52833 44 205 4.99E-41 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 PANTHER PTHR22642:SF2 5 530 1.4E-169 T 22-04-2016 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 PANTHER PTHR22642 5 530 1.4E-169 T 22-04-2016 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 Pfam PF07969 Amidohydrolase family 52 529 1.1E-111 T 22-04-2016 IPR013108 Amidohydrolase 3 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 SUPERFAMILY SSF51556 195 488 1.27E-40 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 SUPERFAMILY SSF51556 60 119 1.27E-40 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:3.20.20.140 201 470 3.5E-40 T 22-04-2016 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:3.20.20.140 68 82 3.5E-40 T 22-04-2016 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:2.30.40.10 1 67 2.2E-9 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 Gene3D G3DSA:2.30.40.10 471 530 2.4E-5 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 SUPERFAMILY SSF51338 4 61 3.24E-14 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS00345 d4506478ec5fd0603a187402cbe0f809 531 SUPERFAMILY SSF51338 488 530 3.24E-14 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS08680 60ed439525375dfbac02682a971c142d 438 SUPERFAMILY SSF103473 23 436 6.15E-38 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS08680 60ed439525375dfbac02682a971c142d 438 Gene3D G3DSA:1.20.1250.20 13 221 9.2E-20 T 22-04-2016 TRD_RS08680 60ed439525375dfbac02682a971c142d 438 Gene3D G3DSA:1.20.1250.20 253 434 5.3E-13 T 22-04-2016 TRD_RS08680 60ed439525375dfbac02682a971c142d 438 Pfam PF07690 Major Facilitator Superfamily 31 398 2.7E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS08680 60ed439525375dfbac02682a971c142d 438 PANTHER PTHR23513 7 438 6.1E-60 T 22-04-2016 TRD_RS06405 e425096bca99b06630353c4fa287827a 264 PIRSF PIRSF037395 1 259 6.5E-54 T 22-04-2016 IPR017196 ECF transporter, predicted substrate-specific component UCP037395 TRD_RS06405 e425096bca99b06630353c4fa287827a 264 Pfam PF12822 Protein of unknown function (DUF3816) 70 238 9.7E-14 T 22-04-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 TIGRFAM TIGR01499 folC: bifunctional protein FolC 10 319 2.0E-74 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 Pfam PF02875 Mur ligase family, glutamate ligase domain 187 255 3.0E-10 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 PANTHER PTHR11136 11 330 2.1E-82 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 SUPERFAMILY SSF53623 7 185 1.1E-44 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 SUPERFAMILY SSF53244 187 320 1.05E-29 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 Gene3D G3DSA:3.40.1190.10 7 185 5.7E-50 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 Pfam PF08245 Mur ligase middle domain 21 160 8.1E-9 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS13930 387a2b5be7a0a431a2b293346c8ef006 347 Gene3D G3DSA:3.90.190.20 188 320 3.0E-33 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS05905 4d68475097481c267d6035e68a194849 394 Pfam PF00571 CBS domain 315 367 3.5E-7 T 22-04-2016 IPR000644 CBS domain TRD_RS05905 4d68475097481c267d6035e68a194849 394 SUPERFAMILY SSF54631 279 369 2.19E-14 T 22-04-2016 TRD_RS05905 4d68475097481c267d6035e68a194849 394 PIRSF PIRSF006404 14 378 2.1E-65 T 22-04-2016 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS TRD_RS05905 4d68475097481c267d6035e68a194849 394 Gene3D G3DSA:3.10.580.10 281 366 5.9E-14 T 22-04-2016 TRD_RS05905 4d68475097481c267d6035e68a194849 394 Pfam PF02163 Peptidase family M50 146 211 2.0E-7 T 22-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 TRD_RS05905 4d68475097481c267d6035e68a194849 394 PANTHER PTHR39188 1 355 4.3E-17 T 22-04-2016 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 PANTHER PTHR30270:SF0 6 340 7.2E-97 T 22-04-2016 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 PANTHER PTHR30270 6 340 7.2E-97 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 Gene3D G3DSA:3.30.1330.10 8 152 6.8E-41 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 Pfam PF02769 AIR synthase related protein, C-terminal domain 164 315 2.4E-15 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 SUPERFAMILY SSF55326 13 149 2.44E-31 T 22-04-2016 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 Pfam PF00586 AIR synthase related protein, N-terminal domain 37 149 1.6E-22 T 22-04-2016 IPR016188 PurM-like, N-terminal domain TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 Gene3D G3DSA:3.90.650.10 159 338 4.8E-38 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 11 335 28.054 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 13 338 1.1E-83 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 PIRSF PIRSF005303 6 338 2.6E-84 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 TRD_RS00830 74a24c4155e0f89b6f860f48e4d31af3 341 SUPERFAMILY SSF56042 157 311 9.72E-32 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain TRD_RS13405 f9b61afeaec079fe1e44d2892f2e8716 262 SUPERFAMILY SSF53850 47 243 1.57E-7 T 22-04-2016 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 68 296 2.5E-35 T 22-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 SUPERFAMILY SSF53756 2 338 1.95E-83 T 22-04-2016 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 Gene3D G3DSA:3.40.50.2000 4 142 3.4E-41 T 22-04-2016 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 Gene3D G3DSA:3.40.50.2000 155 338 1.4E-43 T 22-04-2016 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 PANTHER PTHR30160:SF7 1 344 4.3E-56 T 22-04-2016 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 4 337 3.6E-41 T 22-04-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 TRD_RS03020 8d39dbc7fbc371c6e5a5f8e263ccc9ab 344 PANTHER PTHR30160 1 344 4.3E-56 T 22-04-2016 TRD_RS07780 599abee3f65461810cb3fe509fed3b32 320 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 8 300 31.611 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 TRD_RS07780 599abee3f65461810cb3fe509fed3b32 320 PANTHER PTHR30426 8 320 7.4E-95 T 22-04-2016 TRD_RS07780 599abee3f65461810cb3fe509fed3b32 320 Pfam PF02401 LytB protein 10 296 1.6E-80 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 TRD_RS07780 599abee3f65461810cb3fe509fed3b32 320 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 9 298 1.2E-80 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 TRD_RS04920 4d2e59745c550a5ec630e0b871c2b6e7 142 PANTHER PTHR33033 13 134 1.0E-17 T 22-04-2016 TRD_RS04920 4d2e59745c550a5ec630e0b871c2b6e7 142 Gene3D G3DSA:3.30.420.10 12 132 9.7E-10 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS04920 4d2e59745c550a5ec630e0b871c2b6e7 142 SUPERFAMILY SSF53098 12 134 2.4E-18 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS04920 4d2e59745c550a5ec630e0b871c2b6e7 142 PANTHER PTHR33033:SF11 13 134 1.0E-17 T 22-04-2016 TRD_RS04920 4d2e59745c550a5ec630e0b871c2b6e7 142 Pfam PF13456 Reverse transcriptase-like 45 134 5.1E-10 T 22-04-2016 TRD_RS05755 fc4108390c44aea83ee52967cd1b6f30 165 Pfam PF00430 ATP synthase B/B' CF(0) 11 140 2.5E-30 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 TRD_RS05755 fc4108390c44aea83ee52967cd1b6f30 165 SUPERFAMILY SSF81573 66 125 3.79E-11 T 22-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain TRD_RS05755 fc4108390c44aea83ee52967cd1b6f30 165 Hamap MF_01398 ATP synthase subunit b [atpF]. 4 160 13.84 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 TRD_RS05755 fc4108390c44aea83ee52967cd1b6f30 165 PANTHER PTHR33445 1 165 3.2E-39 T 22-04-2016 TRD_RS05755 fc4108390c44aea83ee52967cd1b6f30 165 Gene3D G3DSA:1.20.5.620 66 125 4.4E-13 T 22-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain TRD_RS05755 fc4108390c44aea83ee52967cd1b6f30 165 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 14 160 2.2E-35 T 22-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 TRD_RS13540 be5f668b95f82f37577e2a5a67ccf758 320 PANTHER PTHR11138 83 215 8.5E-26 T 22-04-2016 TRD_RS13540 be5f668b95f82f37577e2a5a67ccf758 320 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 167 190 - T 22-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS13540 be5f668b95f82f37577e2a5a67ccf758 320 Pfam PF00551 Formyl transferase 113 190 3.1E-17 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS13540 be5f668b95f82f37577e2a5a67ccf758 320 Gene3D G3DSA:3.40.50.170 78 215 2.2E-28 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS13540 be5f668b95f82f37577e2a5a67ccf758 320 SUPERFAMILY SSF53328 71 216 2.22E-31 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 Gene3D G3DSA:3.30.70.360 293 340 7.1E-21 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 Gene3D G3DSA:3.30.70.360 206 245 7.1E-21 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 Gene3D G3DSA:3.40.630.10 379 441 1.9E-56 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 Gene3D G3DSA:3.40.630.10 11 205 1.9E-56 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 77 86 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 Pfam PF01546 Peptidase family M20/M25/M40 78 438 1.5E-33 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 PANTHER PTHR11014:SF106 279 445 7.9E-80 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 SUPERFAMILY SSF55031 294 342 1.62E-10 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 SUPERFAMILY SSF55031 197 245 1.62E-10 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 PANTHER PTHR11014:SF106 12 255 7.9E-80 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 112 151 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 PANTHER PTHR11014 12 255 7.9E-80 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 Pfam PF07687 Peptidase dimerisation domain 193 342 9.3E-16 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 PANTHER PTHR11014 279 445 7.9E-80 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 SUPERFAMILY SSF53187 354 441 8.0E-53 T 22-04-2016 TRD_RS01320 0e6ec64eca3e5f228d97baee3a95099f 448 SUPERFAMILY SSF53187 9 186 8.0E-53 T 22-04-2016 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 18 427 6.7E-126 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 PIRSF PIRSF000505 10 433 2.7E-144 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 18 433 33.454 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 PANTHER PTHR21090 10 432 4.6E-163 T 22-04-2016 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 ProSitePatterns PS00104 EPSP synthase signature 1. 97 111 - T 22-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 ProSitePatterns PS00885 EPSP synthase signature 2. 346 364 - T 22-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 PANTHER PTHR21090:SF5 10 432 4.6E-163 T 22-04-2016 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 Gene3D G3DSA:3.65.10.10 30 244 2.7E-62 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 Gene3D G3DSA:3.65.10.10 245 429 9.6E-68 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 23 429 1.7E-134 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 TRD_RS01130 d855726b0f5ee0b8245297d5754b3a9e 434 SUPERFAMILY SSF55205 18 429 2.75E-122 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 TRD_RS13440 6f6bbef4ce5228cb6b9c1ba6e695b3f6 386 Pfam PF13367 Protease prsW family 67 263 7.3E-47 T 22-04-2016 IPR026898 Protease PrsW GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- TRD_RS13440 6f6bbef4ce5228cb6b9c1ba6e695b3f6 386 PANTHER PTHR36844 286 377 1.0E-23 T 22-04-2016 TRD_RS13440 6f6bbef4ce5228cb6b9c1ba6e695b3f6 386 PANTHER PTHR36844 27 270 1.0E-23 T 22-04-2016 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 Gene3D G3DSA:3.40.640.10 49 261 6.5E-70 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 Gene3D G3DSA:3.90.1150.10 262 358 6.2E-26 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 357 1.1E-100 T 22-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 360 57.218 T 22-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 SUPERFAMILY SSF53383 18 358 1.13E-87 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS02005 40e83568a26325b34624742c049fecd2 360 Pfam PF00155 Aminotransferase class I and II 36 356 8.8E-55 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 PANTHER PTHR11751:SF3 21 360 7.2E-91 T 22-04-2016 TRD_RS02005 40e83568a26325b34624742c049fecd2 360 PANTHER PTHR11751 21 360 7.2E-91 T 22-04-2016 TRD_RS11045 6b5d02525dbef8066b7941101116ee16 174 PANTHER PTHR30465:SF74 94 174 6.6E-38 T 22-04-2016 TRD_RS11045 6b5d02525dbef8066b7941101116ee16 174 PANTHER PTHR30465 8 67 6.6E-38 T 22-04-2016 TRD_RS11045 6b5d02525dbef8066b7941101116ee16 174 PANTHER PTHR30465 94 174 6.6E-38 T 22-04-2016 TRD_RS11045 6b5d02525dbef8066b7941101116ee16 174 PANTHER PTHR30465:SF74 8 67 6.6E-38 T 22-04-2016 TRD_RS06525 d2e62f6de408e664711917962d61358a 71 SUPERFAMILY SSF55331 1 61 2.36E-15 T 22-04-2016 IPR014347 Tautomerase/MIF superfamily TRD_RS06525 d2e62f6de408e664711917962d61358a 71 PANTHER PTHR35530 1 68 1.0E-12 T 22-04-2016 TRD_RS06525 d2e62f6de408e664711917962d61358a 71 Pfam PF01361 Tautomerase enzyme 4 54 6.2E-11 T 22-04-2016 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 TRD_RS06525 d2e62f6de408e664711917962d61358a 71 PANTHER PTHR35530:SF1 1 68 1.0E-12 T 22-04-2016 TRD_RS06525 d2e62f6de408e664711917962d61358a 71 Gene3D G3DSA:3.30.429.20 1 63 8.3E-20 T 22-04-2016 TRD_RS13530 4555380ec7878fcf24bf62bee8ebec46 224 Pfam PF08241 Methyltransferase domain 65 156 2.3E-18 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 TRD_RS13530 4555380ec7878fcf24bf62bee8ebec46 224 PANTHER PTHR10108 3 177 5.7E-23 T 22-04-2016 TRD_RS13530 4555380ec7878fcf24bf62bee8ebec46 224 Gene3D G3DSA:3.40.50.150 28 179 9.6E-26 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS13530 4555380ec7878fcf24bf62bee8ebec46 224 SUPERFAMILY SSF53335 29 185 3.1E-29 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS13530 4555380ec7878fcf24bf62bee8ebec46 224 PANTHER PTHR10108:SF705 3 177 5.7E-23 T 22-04-2016 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 SUPERFAMILY SSF51338 3 60 3.46E-26 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 SUPERFAMILY SSF51338 477 528 3.46E-26 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:3.20.20.140 74 290 8.0E-95 T 22-04-2016 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:3.20.20.140 394 462 8.0E-95 T 22-04-2016 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 PANTHER PTHR22935:SF55 119 536 5.3E-35 T 22-04-2016 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 SUPERFAMILY SSF51556 60 298 5.21E-67 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS09080 f496311249befbca58615442d5cc25a6 542 SUPERFAMILY SSF51556 338 477 5.21E-67 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS09080 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:2.30.40.10 3 73 1.2E-18 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 Gene3D G3DSA:2.30.40.10 463 528 3.7E-10 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 Pfam PF07969 Amidohydrolase family 48 286 2.3E-7 T 22-04-2016 IPR013108 Amidohydrolase 3 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 Pfam PF07969 Amidohydrolase family 401 521 1.0E-15 T 22-04-2016 IPR013108 Amidohydrolase 3 TRD_RS09080 f496311249befbca58615442d5cc25a6 542 PANTHER PTHR22935 119 536 5.3E-35 T 22-04-2016 TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 198 31.395 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 197 3.5E-51 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 SUPERFAMILY SSF52374 3 198 1.31E-48 T 22-04-2016 TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 68 1.1E-9 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 PANTHER PTHR12039 5 198 1.2E-43 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 Gene3D G3DSA:3.40.50.620 2 199 2.0E-61 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS02975 d4110cf24d7a828aa3b449f581579cc4 214 Pfam PF01467 Cytidylyltransferase-like 6 172 8.1E-27 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 TRD_RS03680 d039c2c0af998bdc4d0457417c6c910a 318 Gene3D G3DSA:3.40.50.300 45 244 2.3E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03680 d039c2c0af998bdc4d0457417c6c910a 318 Pfam PF03308 ArgK protein 20 265 3.2E-62 T 22-04-2016 TRD_RS03680 d039c2c0af998bdc4d0457417c6c910a 318 PANTHER PTHR23408:SF3 7 277 3.1E-49 T 22-04-2016 TRD_RS03680 d039c2c0af998bdc4d0457417c6c910a 318 PANTHER PTHR23408 7 277 3.1E-49 T 22-04-2016 TRD_RS03680 d039c2c0af998bdc4d0457417c6c910a 318 SUPERFAMILY SSF52540 4 268 2.87E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 SMART SM00116 236 283 3.6E-6 T 22-04-2016 IPR000644 CBS domain TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 SMART SM00116 171 219 5.0E-4 T 22-04-2016 IPR000644 CBS domain TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Gene3D G3DSA:3.10.580.10 166 279 6.4E-29 T 22-04-2016 TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 SMART SM00100 18 137 4.1E-9 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 SUPERFAMILY SSF51206 11 144 1.31E-24 T 22-04-2016 IPR018490 Cyclic nucleotide-binding-like TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Gene3D G3DSA:2.60.120.10 13 146 2.3E-20 T 22-04-2016 IPR014710 RmlC-like jelly roll fold TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF00027 Cyclic nucleotide-binding domain 38 124 3.0E-13 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF00571 CBS domain 229 279 1.4E-8 T 22-04-2016 IPR000644 CBS domain TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF00571 CBS domain 168 217 1.7E-8 T 22-04-2016 IPR000644 CBS domain TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 SUPERFAMILY SSF54631 165 279 1.89E-27 T 22-04-2016 TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 484 628 1.2E-48 T 22-04-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 PANTHER PTHR11911 169 279 5.6E-23 T 22-04-2016 TRD_RS05180 9ed9383e50c22aa93ee46ef08ea921a0 635 Pfam PF03445 Putative nucleotidyltransferase DUF294 310 447 8.0E-47 T 22-04-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 376 4.0E-15 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 Gene3D G3DSA:3.40.50.300 2 182 1.9E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 Gene3D G3DSA:3.40.50.300 268 376 1.9E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 PANTHER PTHR32182:SF0 1 394 1.7E-51 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 PANTHER PTHR32182 1 394 1.7E-51 T 22-04-2016 TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 396 80.28 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 SUPERFAMILY SSF52540 1 231 1.08E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 SUPERFAMILY SSF52540 268 375 1.08E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 377 4.6E-82 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 TRD_RS03275 f36d72b5e25d58d55654ef893a56f59b 396 ProSitePatterns PS00617 RecF protein signature 1. 128 148 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 TRD_RS08105 73fe7c722c722a737949d291724004eb 165 PANTHER PTHR36155 1 161 4.1E-93 T 22-04-2016 TRD_RS08105 73fe7c722c722a737949d291724004eb 165 Pfam PF04008 Adenosine specific kinase 6 159 7.1E-72 T 22-04-2016 IPR007153 Adenosine specific kinase TRD_RS08105 73fe7c722c722a737949d291724004eb 165 PANTHER PTHR36155:SF1 1 161 4.1E-93 T 22-04-2016 TRD_RS08105 73fe7c722c722a737949d291724004eb 165 SUPERFAMILY SSF103165 1 160 4.32E-68 T 22-04-2016 IPR007153 Adenosine specific kinase TRD_RS08105 73fe7c722c722a737949d291724004eb 165 Gene3D G3DSA:3.40.1520.10 1 160 8.6E-75 T 22-04-2016 IPR007153 Adenosine specific kinase TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 SMART SM01012 128 183 2.8E-25 T 22-04-2016 IPR005561 ANTAR domain GO:0003723 TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 SMART SM00448 1 112 2.7E-37 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 Gene3D G3DSA:1.10.10.10 131 188 2.7E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 SUPERFAMILY SSF52172 1 183 2.42E-59 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 PANTHER PTHR26402:SF474 1 146 1.7E-46 T 22-04-2016 TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 Pfam PF03861 ANTAR domain 131 183 5.9E-23 T 22-04-2016 IPR005561 ANTAR domain GO:0003723 TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 PANTHER PTHR26402 1 146 1.7E-46 T 22-04-2016 TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 PIRSF PIRSF036382 1 190 2.9E-68 T 22-04-2016 IPR008327 Signal transduction response regulator, antiterminator TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 Gene3D G3DSA:3.40.50.2300 1 124 1.9E-38 T 22-04-2016 TRD_RS03145 76846f1dba35731edce756779a49e9ba 199 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS01500 65bf58437fef7e03605462084d3ec38d 68 SUPERFAMILY SSF55331 11 52 2.29E-6 T 22-04-2016 IPR014347 Tautomerase/MIF superfamily TRD_RS01500 65bf58437fef7e03605462084d3ec38d 68 Gene3D G3DSA:3.30.429.20 1 51 4.0E-7 T 22-04-2016 TRD_RS08895 59d57de1ccbbd61693b178464dcf7acb 84 Pfam PF02416 mttA/Hcf106 family 15 54 2.0E-10 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PANTHER PTHR11482 17 448 7.6E-149 T 22-04-2016 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 Gene3D G3DSA:2.40.37.10 297 441 4.5E-43 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 SUPERFAMILY SSF50621 282 440 2.3E-46 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 327 417 1.7E-13 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PANTHER PTHR11482:SF5 17 448 7.6E-149 T 22-04-2016 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 18 440 6.7E-133 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 SUPERFAMILY SSF51419 39 309 9.81E-72 T 22-04-2016 IPR029066 PLP-binding barrel TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 28 441 38.297 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 64 307 1.9E-53 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 Gene3D G3DSA:3.20.20.10 49 296 1.0E-77 T 22-04-2016 IPR029066 PLP-binding barrel TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 180 189 1.6E-23 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 326 344 1.6E-23 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 408 430 1.6E-23 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01181 Diaminopimelate decarboxylase signature 90 107 1.6E-23 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 72 90 - T 22-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 72 90 3.4E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 297 316 3.4E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 92 104 3.4E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 398 411 3.4E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 TRD_RS08025 92dffdb5a4cd4bf04c78db769f7616c6 449 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 208 221 3.4E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 2.4E-8 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 69 80 2.4E-8 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 PANTHER PTHR21581:SF1 39 335 1.6E-41 T 22-04-2016 TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 Gene3D G3DSA:3.40.710.10 31 285 4.4E-62 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 37 270 5.6E-37 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 PANTHER PTHR21581 39 335 1.6E-41 T 22-04-2016 TRD_RS13465 2878e7a8343b1ec941441bad93457f96 364 SUPERFAMILY SSF56601 25 289 8.45E-48 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS13610 2f9d3191375027e55b98a21f4057bc30 319 PANTHER PTHR31302 15 291 1.1E-42 T 22-04-2016 TRD_RS13610 2f9d3191375027e55b98a21f4057bc30 319 PANTHER PTHR31302:SF6 15 291 1.1E-42 T 22-04-2016 TRD_RS13610 2f9d3191375027e55b98a21f4057bc30 319 SUPERFAMILY SSF56300 256 290 7.06E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS13610 2f9d3191375027e55b98a21f4057bc30 319 SUPERFAMILY SSF56300 49 223 7.06E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS13610 2f9d3191375027e55b98a21f4057bc30 319 Pfam PF00149 Calcineurin-like phosphoesterase 50 217 4.8E-11 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS13610 2f9d3191375027e55b98a21f4057bc30 319 Gene3D G3DSA:3.60.21.10 50 222 2.3E-16 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 SMART SM00938 4 105 2.1E-44 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 PANTHER PTHR30115:SF8 1 112 1.1E-51 T 22-04-2016 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 6.4E-34 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 22-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 PANTHER PTHR30115 1 112 1.1E-51 T 22-04-2016 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 52 75 4.4E-25 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 2 17 4.4E-25 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 83 103 4.4E-25 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 PRINTS PR00340 P-II protein signature 23 41 4.4E-25 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 Gene3D G3DSA:3.30.70.120 1 112 8.3E-40 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal TRD_RS05135 57a9d5f0b2da0b8beacd59a743145b2b 116 SUPERFAMILY SSF54913 1 112 4.77E-37 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 PANTHER PTHR21381:SF3 1 264 1.6E-92 T 22-04-2016 TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 Gene3D G3DSA:3.20.20.70 66 238 8.9E-8 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 Pfam PF03437 BtpA family 13 262 5.4E-87 T 22-04-2016 IPR005137 Photosystem I BtpA, assembly TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 PANTHER PTHR21381 1 264 1.6E-92 T 22-04-2016 IPR005137 Photosystem I BtpA, assembly TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 52 201 4.0E-34 T 22-04-2016 IPR005137 Photosystem I BtpA, assembly TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 TIGRFAM TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family 13 263 1.5E-87 T 22-04-2016 IPR005137 Photosystem I BtpA, assembly TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 SUPERFAMILY SSF51366 17 266 2.35E-27 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS05560 5e75a8e140be6458790571464d1a3cb5 268 PIRSF PIRSF005956 2 267 2.2E-97 T 22-04-2016 IPR005137 Photosystem I BtpA, assembly TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PANTHER PTHR32472:SF10 3 453 1.0E-198 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 SMART SM00382 89 243 3.4E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 SUPERFAMILY SSF54211 254 268 1.14E-36 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 SUPERFAMILY SSF54211 302 452 1.14E-36 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PANTHER PTHR32472 3 453 1.0E-198 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 247 273 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 321 344 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 81 109 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 123 140 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 173 197 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 212 240 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 PRINTS PR01874 DNA repair protein radA signature 14 38 1.6E-85 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 Pfam PF13481 AAA domain 72 221 7.2E-19 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 Gene3D G3DSA:3.40.50.300 59 275 5.8E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 SUPERFAMILY SSF52540 69 288 7.62E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 428 1.5E-9 T 22-04-2016 TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 Gene3D G3DSA:3.30.230.10 284 451 2.8E-31 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS04765 e640307a011be2c0f58515f9033d6f71 470 TIGRFAM TIGR00416 sms: DNA repair protein RadA 7 450 9.9E-170 T 22-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 TRD_RS07520 7958542d9b3fb321157cbcee556cbe7c 595 PANTHER PTHR30290:SF10 114 593 6.7E-84 T 22-04-2016 TRD_RS07520 7958542d9b3fb321157cbcee556cbe7c 595 PANTHER PTHR30290 114 593 6.7E-84 T 22-04-2016 TRD_RS07520 7958542d9b3fb321157cbcee556cbe7c 595 SUPERFAMILY SSF53850 115 573 1.09E-84 T 22-04-2016 TRD_RS07520 7958542d9b3fb321157cbcee556cbe7c 595 Gene3D G3DSA:3.10.105.10 341 553 1.4E-30 T 22-04-2016 TRD_RS07520 7958542d9b3fb321157cbcee556cbe7c 595 Gene3D G3DSA:3.90.76.10 115 269 3.8E-35 T 22-04-2016 TRD_RS07520 7958542d9b3fb321157cbcee556cbe7c 595 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 128 500 1.2E-57 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS05565 1479e653137638e9c55d551d9d91cce2 561 SUPERFAMILY SSF64182 51 442 7.85E-97 T 22-04-2016 TRD_RS05565 1479e653137638e9c55d551d9d91cce2 561 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 553 6.8E-128 T 22-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 TRD_RS05565 1479e653137638e9c55d551d9d91cce2 561 PANTHER PTHR30255:SF2 1 559 6.4E-165 T 22-04-2016 TRD_RS05565 1479e653137638e9c55d551d9d91cce2 561 Pfam PF02272 DHHA1 domain 370 432 1.1E-8 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 TRD_RS05565 1479e653137638e9c55d551d9d91cce2 561 Pfam PF01368 DHH family 77 203 3.3E-8 T 22-04-2016 IPR001667 DDH domain TRD_RS05565 1479e653137638e9c55d551d9d91cce2 561 PANTHER PTHR30255 1 559 6.4E-165 T 22-04-2016 TRD_RS02125 f4a017a6189933b9e58a343f67b58619 322 SUPERFAMILY SSF51679 2 319 3.4E-74 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS02125 f4a017a6189933b9e58a343f67b58619 322 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 5 227 4.7E-76 T 22-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c TRD_RS02125 f4a017a6189933b9e58a343f67b58619 322 Pfam PF00296 Luciferase-like monooxygenase 9 292 3.2E-56 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS02125 f4a017a6189933b9e58a343f67b58619 322 PANTHER PTHR30011 6 246 1.5E-64 T 22-04-2016 TRD_RS02125 f4a017a6189933b9e58a343f67b58619 322 PANTHER PTHR30011:SF5 6 246 1.5E-64 T 22-04-2016 TRD_RS02125 f4a017a6189933b9e58a343f67b58619 322 Gene3D G3DSA:3.20.20.30 1 318 5.3E-80 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 PANTHER PTHR11715 3 142 2.8E-48 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 Gene3D G3DSA:2.40.50.100 15 138 3.7E-32 T 22-04-2016 TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 SUPERFAMILY SSF51230 10 123 1.83E-30 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 55 84 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 10 134 25.432 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 Pfam PF01597 Glycine cleavage H-protein 15 132 1.4E-34 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00695 0bccb1015db031b2ad6b57e0fe6e53d7 145 PANTHER PTHR11715:SF13 3 142 2.8E-48 T 22-04-2016 TRD_RS03380 64741d4399b06136ef47b588b310cb0d 67 Gene3D G3DSA:3.40.1190.10 16 62 4.2E-9 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS03380 64741d4399b06136ef47b588b310cb0d 67 SUPERFAMILY SSF53623 14 58 1.22E-9 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS03925 41c99edc0a2278830c288a82fe389db9 137 PANTHER PTHR33202 1 137 1.3E-25 T 22-04-2016 TRD_RS03925 41c99edc0a2278830c288a82fe389db9 137 Pfam PF01475 Ferric uptake regulator family 15 104 1.1E-17 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 TRD_RS03925 41c99edc0a2278830c288a82fe389db9 137 SUPERFAMILY SSF46785 9 135 7.61E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03925 41c99edc0a2278830c288a82fe389db9 137 Gene3D G3DSA:1.10.10.10 9 80 2.8E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 Pfam PF06969 HemN C-terminal domain 322 387 2.8E-16 T 22-04-2016 IPR010723 HemN, C-terminal TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 24 372 6.6E-91 T 22-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 Pfam PF04055 Radical SAM superfamily 26 194 7.7E-21 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 Gene3D G3DSA:3.80.30.20 24 257 2.1E-38 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 PANTHER PTHR13932:SF5 18 399 2.5E-147 T 22-04-2016 TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 SMART SM00729 21 241 3.9E-55 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 SUPERFAMILY SSF102114 11 397 1.44E-119 T 22-04-2016 TRD_RS06740 a7ed488b9a038234fe8ed33e7e7bfb69 404 PANTHER PTHR13932 18 399 2.5E-147 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 PANTHER PTHR24095 22 651 8.1E-291 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 18 654 52.904 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 SUPERFAMILY SSF56801 39 651 1.1E-180 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Gene3D G3DSA:3.40.50.980 276 433 2.1E-28 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 40 90 2.3E-20 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Gene3D G3DSA:3.30.300.30 529 636 1.1E-27 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 39 652 2.5E-297 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Gene3D G3DSA:2.30.38.10 450 526 1.1E-11 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Pfam PF00501 AMP-binding enzyme 99 533 1.4E-96 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 ProSitePatterns PS00455 Putative AMP-binding domain signature. 271 282 - T 22-04-2016 IPR020845 AMP-binding, conserved site TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Gene3D G3DSA:3.40.50.980 92 275 3.6E-39 T 22-04-2016 TRD_RS03265 0cb43339af893a4133bc37d23161effb 662 Pfam PF13193 AMP-binding enzyme C-terminal domain 542 620 7.0E-28 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain TRD_RS00425 d2aa82772d7b9b50844e49e254459943 63 SUPERFAMILY SSF143800 3 59 4.51E-25 T 22-04-2016 TRD_RS00425 d2aa82772d7b9b50844e49e254459943 63 Pfam PF00830 Ribosomal L28 family 3 58 1.4E-27 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 TRD_RS00425 d2aa82772d7b9b50844e49e254459943 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 55 5.2E-23 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS00425 d2aa82772d7b9b50844e49e254459943 63 Gene3D G3DSA:2.30.170.40 2 58 2.7E-25 T 22-04-2016 TRD_RS00425 d2aa82772d7b9b50844e49e254459943 63 PANTHER PTHR13528 3 59 1.1E-17 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 TRD_RS00425 d2aa82772d7b9b50844e49e254459943 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 63 17.694 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS08825 e0232a38ff12ca832b37599c4a582291 93 PANTHER PTHR12599 1 92 2.3E-34 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 TRD_RS08825 e0232a38ff12ca832b37599c4a582291 93 SUPERFAMILY SSF55248 2 92 1.12E-33 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 TRD_RS08825 e0232a38ff12ca832b37599c4a582291 93 Gene3D G3DSA:3.30.1360.20 2 92 5.0E-33 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 TRD_RS08825 e0232a38ff12ca832b37599c4a582291 93 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 1 92 24.47 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 TRD_RS08825 e0232a38ff12ca832b37599c4a582291 93 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 3 90 2.0E-31 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 Pfam PF00580 UvrD/REP helicase N-terminal domain 1 188 5.4E-39 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 Gene3D G3DSA:3.40.50.300 154 188 5.4E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 Gene3D G3DSA:3.40.50.300 1 72 5.4E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 PANTHER PTHR11070 1 188 6.7E-57 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 SUPERFAMILY SSF52540 1 188 1.99E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 Gene3D G3DSA:1.10.10.160 76 153 7.8E-22 T 22-04-2016 IPR013986 DExx box DNA helicase domain TRD_RS10640 948d2ecc1cf55adeb4ea3fc45b1965d0 188 PANTHER PTHR11070:SF7 1 188 6.7E-57 T 22-04-2016 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 PANTHER PTHR21198 1 230 1.6E-58 T 22-04-2016 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 TIGRFAM TIGR00035 asp_race: aspartate racemase 5 234 1.5E-60 T 22-04-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 PANTHER PTHR21198:SF6 1 230 1.6E-58 T 22-04-2016 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 226 5.0E-62 T 22-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 82 90 - T 22-04-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 SUPERFAMILY SSF53681 123 230 1.96E-24 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 SUPERFAMILY SSF53681 6 114 2.03E-33 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 Gene3D G3DSA:3.40.50.1860 6 115 3.5E-42 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 195 205 - T 22-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05095 4164ffe6766094043974d6d355f7f0c4 245 Gene3D G3DSA:3.40.50.1860 116 218 2.0E-26 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 185 200 3.2E-13 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 43 62 3.2E-13 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 228 239 3.2E-13 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 115 128 3.2E-13 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 PRINTS PR00990 Ribokinase signature 16 37 3.2E-13 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 PANTHER PTHR10584 14 314 1.1E-49 T 22-04-2016 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 SUPERFAMILY SSF53613 13 313 2.65E-59 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 257 270 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 48 72 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 Gene3D G3DSA:3.40.1190.20 6 315 2.2E-66 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS04890 b196a800f83a70da492d9cdced5814c0 321 Pfam PF00294 pfkB family carbohydrate kinase 12 305 3.0E-47 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB TRD_RS02390 b52bb3a42bdb7425727a18af01c2cde2 208 Gene3D G3DSA:3.40.50.150 8 197 4.7E-33 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS02390 b52bb3a42bdb7425727a18af01c2cde2 208 Pfam PF08241 Methyltransferase domain 49 143 1.7E-21 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 TRD_RS02390 b52bb3a42bdb7425727a18af01c2cde2 208 PANTHER PTHR10108:SF714 8 207 1.1E-29 T 22-04-2016 TRD_RS02390 b52bb3a42bdb7425727a18af01c2cde2 208 PANTHER PTHR10108 8 207 1.1E-29 T 22-04-2016 TRD_RS02390 b52bb3a42bdb7425727a18af01c2cde2 208 SUPERFAMILY SSF53335 11 193 3.28E-34 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 Gene3D G3DSA:3.40.50.1000 166 259 5.3E-34 T 22-04-2016 IPR023214 HAD-like domain TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 Gene3D G3DSA:3.40.50.1000 19 91 5.3E-34 T 22-04-2016 IPR023214 HAD-like domain TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 19 253 8.1E-37 T 22-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 Pfam PF02358 Trehalose-phosphatase 21 211 2.5E-33 T 22-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 PANTHER PTHR10788 1 208 1.8E-17 T 22-04-2016 TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 PANTHER PTHR10788:SF31 1 208 1.8E-17 T 22-04-2016 TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 19 209 8.6E-15 T 22-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 TRD_RS04070 b2a06f9888d3705f0792280d69eacd2d 263 SUPERFAMILY SSF56784 19 256 2.01E-33 T 22-04-2016 IPR023214 HAD-like domain TRD_RS05150 50b7e5dd45c605266e8e0ce16da662d0 420 PANTHER PTHR23501 23 395 8.2E-35 T 22-04-2016 TRD_RS05150 50b7e5dd45c605266e8e0ce16da662d0 420 SUPERFAMILY SSF103473 14 398 3.53E-54 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS05150 50b7e5dd45c605266e8e0ce16da662d0 420 Gene3D G3DSA:1.20.1250.20 14 190 7.2E-24 T 22-04-2016 TRD_RS05150 50b7e5dd45c605266e8e0ce16da662d0 420 Gene3D G3DSA:1.20.1250.20 219 398 9.2E-23 T 22-04-2016 TRD_RS05150 50b7e5dd45c605266e8e0ce16da662d0 420 Pfam PF07690 Major Facilitator Superfamily 23 237 5.2E-21 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.3E-55 T 22-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 Gene3D G3DSA:1.10.8.50 1 72 8.2E-32 T 22-04-2016 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 29.714 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 PIRSF PIRSF002134 1 125 5.8E-49 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 Gene3D G3DSA:4.10.910.10 73 122 5.1E-27 T 22-04-2016 IPR027437 30s ribosomal protein S13, C-terminal TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 PANTHER PTHR10871 1 122 2.7E-68 T 22-04-2016 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 22-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 Pfam PF00416 Ribosomal protein S13/S18 3 109 7.4E-35 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04405 74d5bf348e7baecd11253dfcd6ce6faf 128 SUPERFAMILY SSF46946 2 121 1.16E-48 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 TRD_RS01120 fcbaecd8b225a6ad0f2cf381a09dcc09 304 Pfam PF08445 FR47-like protein 84 128 5.2E-5 T 22-04-2016 IPR013653 FR47-like GO:0016747 TRD_RS01120 fcbaecd8b225a6ad0f2cf381a09dcc09 304 PANTHER PTHR23091 116 277 3.8E-17 T 22-04-2016 TRD_RS01120 fcbaecd8b225a6ad0f2cf381a09dcc09 304 SUPERFAMILY SSF55729 92 279 3.26E-30 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS01120 fcbaecd8b225a6ad0f2cf381a09dcc09 304 Pfam PF00583 Acetyltransferase (GNAT) family 197 272 1.8E-15 T 22-04-2016 IPR000182 GNAT domain GO:0008080 TRD_RS01120 fcbaecd8b225a6ad0f2cf381a09dcc09 304 Gene3D G3DSA:3.40.630.30 161 279 1.8E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS01120 fcbaecd8b225a6ad0f2cf381a09dcc09 304 Gene3D G3DSA:3.40.630.30 87 130 1.2E-4 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS03945 152871975eb450e841447d02d27d8bf9 311 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 12 302 2.1E-45 T 22-04-2016 IPR018659 Protein of unknown function DUF2090 TRD_RS03945 152871975eb450e841447d02d27d8bf9 311 Gene3D G3DSA:3.20.20.70 15 291 6.1E-16 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS03945 152871975eb450e841447d02d27d8bf9 311 SUPERFAMILY SSF51569 10 275 1.03E-7 T 22-04-2016 TRD_RS05425 08cf140510c5c1012a6c91d776c99908 327 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 16 303 1.3E-76 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 TRD_RS05425 08cf140510c5c1012a6c91d776c99908 327 Pfam PF02401 LytB protein 17 303 7.6E-78 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 TRD_RS05425 08cf140510c5c1012a6c91d776c99908 327 PANTHER PTHR30426 15 303 2.4E-88 T 22-04-2016 TRD_RS05425 08cf140510c5c1012a6c91d776c99908 327 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 15 307 30.972 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 TRD_RS00665 3ad4f2b4e1a8a0e17e57c7ed8e5d19bc 101 Gene3D G3DSA:3.30.70.900 5 92 2.5E-5 T 22-04-2016 TRD_RS00665 3ad4f2b4e1a8a0e17e57c7ed8e5d19bc 101 SUPERFAMILY SSF54909 1 85 1.27E-6 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel TRD_RS07090 e25ee87e11239811eeda7dc5ebc1236e 216 Pfam PF13847 Methyltransferase domain 57 167 3.5E-17 T 22-04-2016 IPR025714 Methyltransferase domain TRD_RS07090 e25ee87e11239811eeda7dc5ebc1236e 216 Gene3D G3DSA:3.40.50.150 32 196 1.5E-33 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS07090 e25ee87e11239811eeda7dc5ebc1236e 216 SUPERFAMILY SSF53335 39 208 1.15E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS07090 e25ee87e11239811eeda7dc5ebc1236e 216 PANTHER PTHR10108 18 167 6.8E-24 T 22-04-2016 TRD_RS06385 234be0e69c0a5dd4419bd09e3d7e8318 129 PANTHER PTHR33452 2 117 1.5E-13 T 22-04-2016 TRD_RS06385 234be0e69c0a5dd4419bd09e3d7e8318 129 PANTHER PTHR33452:SF6 2 117 1.5E-13 T 22-04-2016 TRD_RS06385 234be0e69c0a5dd4419bd09e3d7e8318 129 Pfam PF07681 DoxX 5 85 1.7E-10 T 22-04-2016 IPR032808 DoxX family TRD_RS02365 1b0fdfe6c151a4c9e2b30000bcbbd6f0 209 PANTHER PTHR41913:SF1 14 192 4.1E-41 T 22-04-2016 TRD_RS02365 1b0fdfe6c151a4c9e2b30000bcbbd6f0 209 Pfam PF07920 Protein of unknown function (DUF1684) 49 185 1.3E-44 T 22-04-2016 IPR012467 Protein of unknown function DUF1684 TRD_RS02365 1b0fdfe6c151a4c9e2b30000bcbbd6f0 209 PANTHER PTHR41913 14 192 4.1E-41 T 22-04-2016 TRD_RS04320 3c4adc9e85d9048239c053fdac68859d 133 SUPERFAMILY SSF57716 91 125 3.28E-8 T 22-04-2016 TRD_RS04320 3c4adc9e85d9048239c053fdac68859d 133 SUPERFAMILY SSF109635 13 90 1.44E-6 T 22-04-2016 TRD_RS04320 3c4adc9e85d9048239c053fdac68859d 133 PANTHER PTHR33823 6 131 9.7E-19 T 22-04-2016 TRD_RS04320 3c4adc9e85d9048239c053fdac68859d 133 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 89 124 5.1E-12 T 22-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 PANTHER PTHR31118:SF9 211 273 2.4E-24 T 22-04-2016 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 PANTHER PTHR31118:SF9 5 181 2.4E-24 T 22-04-2016 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 Gene3D G3DSA:3.50.30.50 8 270 1.7E-53 T 22-04-2016 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 Pfam PF04199 Putative cyclase 12 181 1.2E-31 T 22-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 SUPERFAMILY SSF102198 8 182 2.62E-42 T 22-04-2016 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 SUPERFAMILY SSF102198 212 268 2.62E-42 T 22-04-2016 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 PANTHER PTHR31118 211 273 2.4E-24 T 22-04-2016 TRD_RS02680 dfdf4af68a6f46c9351c7975edb6be97 273 PANTHER PTHR31118 5 181 2.4E-24 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 SUPERFAMILY SSF52025 86 175 1.2E-9 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 PANTHER PTHR12147 31 439 2.6E-43 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 SUPERFAMILY SSF53187 17 62 1.15E-51 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 SUPERFAMILY SSF53187 216 434 1.15E-51 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 Gene3D G3DSA:3.50.30.30 94 177 7.2E-8 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 Gene3D G3DSA:3.40.630.10 19 74 2.1E-62 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 Gene3D G3DSA:3.40.630.10 231 437 2.1E-62 T 22-04-2016 TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 Pfam PF02225 PA domain 112 204 1.4E-6 T 22-04-2016 IPR003137 PA domain TRD_RS00340 cb5f8c83fee13a72289dd3f5459d4117 467 Pfam PF04389 Peptidase family M28 232 426 1.0E-31 T 22-04-2016 IPR007484 Peptidase M28 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PANTHER PTHR30222:SF5 55 390 3.9E-86 T 22-04-2016 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 Pfam PF13416 Bacterial extracellular solute-binding protein 85 359 2.4E-32 T 22-04-2016 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 Gene3D G3DSA:3.40.190.10 178 312 3.2E-12 T 22-04-2016 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PANTHER PTHR30222 55 390 3.9E-86 T 22-04-2016 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PIRSF PIRSF019574 52 392 2.0E-99 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 Gene3D G3DSA:3.40.190.10 313 359 3.7E-52 T 22-04-2016 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 Gene3D G3DSA:3.40.190.10 70 174 3.7E-52 T 22-04-2016 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 91 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 118 132 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 112 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 338 364 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 165 181 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 190 204 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 134 147 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 210 229 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 291 310 1.8E-37 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS05330 a1dc816f9879eed2f3a949f007d5393a 392 SUPERFAMILY SSF53850 69 392 8.28E-82 T 22-04-2016 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 Gene3D G3DSA:3.40.80.10 170 322 3.3E-25 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 PANTHER PTHR21666:SF176 181 314 7.1E-24 T 22-04-2016 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 SUPERFAMILY SSF55846 172 322 1.54E-35 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 188 308 6.1E-14 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 PANTHER PTHR21666 181 314 7.1E-24 T 22-04-2016 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 SMART SM00644 178 322 6.8E-22 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 TRD_RS13685 6af0874e20a02f8ac99395ce1a87d556 413 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 35 159 3.3E-5 T 22-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 TRD_RS06275 1b9e1501506bf0831f49e39b05e95b1e 240 SUPERFAMILY SSF49503 42 141 7.34E-19 T 22-04-2016 IPR008972 Cupredoxin TRD_RS06275 1b9e1501506bf0831f49e39b05e95b1e 240 Pfam PF13473 Cupredoxin-like domain 43 129 1.1E-8 T 22-04-2016 IPR028096 EfeO-type cupredoxin-like domain TRD_RS06275 1b9e1501506bf0831f49e39b05e95b1e 240 Gene3D G3DSA:2.60.40.420 42 143 2.3E-19 T 22-04-2016 IPR008972 Cupredoxin TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 SUPERFAMILY SSF51735 6 327 3.97E-91 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 PANTHER PTHR10366:SF39 217 327 1.4E-96 T 22-04-2016 TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 PANTHER PTHR10366:SF39 6 195 1.4E-96 T 22-04-2016 TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 Gene3D G3DSA:3.90.25.10 182 327 1.1E-33 T 22-04-2016 TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 Gene3D G3DSA:3.40.50.720 6 179 4.3E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 253 3.3E-58 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 7 326 1.3E-102 T 22-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 PANTHER PTHR10366 217 327 1.4E-96 T 22-04-2016 TRD_RS08180 ff07f224356122e88479c9f24ccc1f67 329 PANTHER PTHR10366 6 195 1.4E-96 T 22-04-2016 TRD_RS07460 d000a9b75d2c2d83044a37b74a9a2009 433 Pfam PF06245 Protein of unknown function (DUF1015) 21 424 2.5E-78 T 22-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 TRD_RS07460 d000a9b75d2c2d83044a37b74a9a2009 433 PANTHER PTHR36454 15 429 3.0E-60 T 22-04-2016 TRD_RS07460 d000a9b75d2c2d83044a37b74a9a2009 433 PANTHER PTHR36454:SF1 15 429 3.0E-60 T 22-04-2016 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 SUPERFAMILY SSF52029 189 377 8.2E-33 T 22-04-2016 IPR027409 GroEL-like apical domain TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 Gene3D G3DSA:1.10.560.10 413 525 8.5E-37 T 22-04-2016 IPR027413 GroEL-like equatorial domain TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 Gene3D G3DSA:1.10.560.10 6 137 8.5E-37 T 22-04-2016 IPR027413 GroEL-like equatorial domain TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 Pfam PF00118 TCP-1/cpn60 chaperonin family 225 525 4.3E-22 T 22-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 Pfam PF00118 TCP-1/cpn60 chaperonin family 24 143 1.1E-15 T 22-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 401 422 2.3E-20 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 27 53 2.3E-20 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 271 294 2.3E-20 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 353 378 2.3E-20 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PRINTS PR00298 60kDa chaperonin signature 86 113 2.3E-20 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 Gene3D G3DSA:3.50.7.10 177 377 5.7E-38 T 22-04-2016 IPR027409 GroEL-like apical domain TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 SUPERFAMILY SSF48592 407 526 7.72E-40 T 22-04-2016 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 SUPERFAMILY SSF48592 5 134 7.72E-40 T 22-04-2016 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PANTHER PTHR11353 5 525 5.6E-45 T 22-04-2016 TRD_RS07855 9f4309882413798ea981ac1c273bbb39 536 PANTHER PTHR11353:SF64 5 525 5.6E-45 T 22-04-2016 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 PANTHER PTHR10961 8 368 1.1E-114 T 22-04-2016 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 SUPERFAMILY SSF54373 217 318 5.1E-22 T 22-04-2016 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 Pfam PF01266 FAD dependent oxidoreductase 8 357 3.5E-55 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 PANTHER PTHR10961:SF7 8 368 1.1E-114 T 22-04-2016 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.30.9.10 62 149 8.2E-49 T 22-04-2016 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.30.9.10 215 318 8.2E-49 T 22-04-2016 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 SUPERFAMILY SSF51905 7 219 4.73E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 SUPERFAMILY SSF51905 318 375 4.73E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.50.50.60 321 377 3.1E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.50.50.60 150 211 3.1E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08290 b6fe3145e854bd02fdb74bae60867b9c 379 Gene3D G3DSA:3.50.50.60 5 60 3.1E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 PANTHER PTHR11911 3 122 4.7E-34 T 22-04-2016 TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 SUPERFAMILY SSF54631 6 121 1.39E-35 T 22-04-2016 TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 Gene3D G3DSA:3.20.20.70 11 122 3.5E-36 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 Pfam PF00571 CBS domain 69 122 9.8E-15 T 22-04-2016 IPR000644 CBS domain TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 Pfam PF00571 CBS domain 11 64 1.4E-16 T 22-04-2016 IPR000644 CBS domain TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 SUPERFAMILY SSF57802 124 151 1.82E-5 T 22-04-2016 TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 Gene3D G3DSA:2.20.28.10 125 150 8.2E-7 T 22-04-2016 IPR004039 Rubredoxin-type fold TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 SMART SM00116 76 123 2.5E-11 T 22-04-2016 IPR000644 CBS domain TRD_RS04085 df74e0d78fe78950659a95130f6cd10f 162 SMART SM00116 18 66 3.0E-14 T 22-04-2016 IPR000644 CBS domain TRD_RS01620 ee081be04445a85062a609f1415ee496 389 Pfam PF03465 eRF1 domain 3 274 383 1.7E-7 T 22-04-2016 IPR005142 eRF1 domain 3 TRD_RS01620 ee081be04445a85062a609f1415ee496 389 SUPERFAMILY SSF53137 156 235 7.41E-15 T 22-04-2016 TRD_RS01620 ee081be04445a85062a609f1415ee496 389 SUPERFAMILY SSF55315 263 307 9.42E-11 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS01620 ee081be04445a85062a609f1415ee496 389 SUPERFAMILY SSF55315 339 383 9.42E-11 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS01620 ee081be04445a85062a609f1415ee496 389 Pfam PF03464 eRF1 domain 2 154 225 1.1E-8 T 22-04-2016 IPR005141 eRF1 domain 2 TRD_RS01620 ee081be04445a85062a609f1415ee496 389 Gene3D G3DSA:3.30.1330.30 275 384 1.9E-9 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 Gene3D G3DSA:4.10.960.10 75 155 1.3E-31 T 22-04-2016 TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 Gene3D G3DSA:2.40.30.10 156 210 3.2E-11 T 22-04-2016 TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 Gene3D G3DSA:2.40.30.10 4 33 3.2E-11 T 22-04-2016 TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 202 1.1E-82 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 PANTHER PTHR11229 4 206 3.3E-101 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 Pfam PF00297 Ribosomal protein L3 96 180 4.9E-16 T 22-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 SUPERFAMILY SSF50447 2 209 3.8E-75 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain TRD_RS04525 6698870c11973fc9b0a010a55cf09687 214 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 205 38.295 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 PANTHER PTHR10668:SF4 4 492 3.8E-109 T 22-04-2016 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 Pfam PF01593 Flavin containing amine oxidoreductase 12 482 4.0E-35 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 494 6.0E-154 T 22-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 Gene3D G3DSA:3.50.50.60 2 80 6.4E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 Gene3D G3DSA:3.50.50.60 209 290 6.4E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 Gene3D G3DSA:3.50.50.60 446 494 6.4E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 SUPERFAMILY SSF51905 451 488 1.94E-68 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 SUPERFAMILY SSF51905 1 318 1.94E-68 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 PANTHER PTHR10668 4 492 3.8E-109 T 22-04-2016 TRD_RS05420 d0276a23aa1d70ac35c594d0b59841c8 513 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 460 480 - T 22-04-2016 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site TRD_RS04095 0a8a253949b85735f982e4d00f49d0df 97 PANTHER PTHR36441 2 94 5.5E-26 T 22-04-2016 TRD_RS04095 0a8a253949b85735f982e4d00f49d0df 97 Gene3D G3DSA:3.30.70.1120 1 95 4.6E-33 T 22-04-2016 IPR007546 Protein of unknown function DUF503 TRD_RS04095 0a8a253949b85735f982e4d00f49d0df 97 SUPERFAMILY SSF103007 1 94 9.15E-29 T 22-04-2016 IPR007546 Protein of unknown function DUF503 TRD_RS04095 0a8a253949b85735f982e4d00f49d0df 97 Pfam PF04456 Protein of unknown function (DUF503) 3 89 1.0E-31 T 22-04-2016 IPR007546 Protein of unknown function DUF503 TRD_RS00805 5fa6894756865f95fd197bb08d81042e 164 Gene3D G3DSA:3.40.630.30 17 155 1.2E-35 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS00805 5fa6894756865f95fd197bb08d81042e 164 Pfam PF13673 Acetyltransferase (GNAT) domain 29 155 5.9E-23 T 22-04-2016 IPR000182 GNAT domain GO:0008080 TRD_RS00805 5fa6894756865f95fd197bb08d81042e 164 PANTHER PTHR23091 9 157 1.3E-25 T 22-04-2016 TRD_RS00805 5fa6894756865f95fd197bb08d81042e 164 SUPERFAMILY SSF55729 23 153 1.11E-32 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PANTHER PTHR24421:SF23 129 351 6.0E-51 T 22-04-2016 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PANTHER PTHR24421 30 46 6.0E-51 T 22-04-2016 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 Pfam PF07730 Histidine kinase 134 204 4.8E-14 T 22-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 SUPERFAMILY SSF55874 207 334 2.62E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PANTHER PTHR24421 129 351 6.0E-51 T 22-04-2016 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 292 1.3E-5 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 316 1.3E-5 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 335 1.3E-5 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 SMART SM00387 242 338 3.4E-11 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 247 337 3.3E-12 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 PANTHER PTHR24421:SF23 30 46 6.0E-51 T 22-04-2016 TRD_RS07805 a91412a97b57a89e64254f952679a4da 364 Gene3D G3DSA:3.30.565.10 203 337 2.8E-12 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 138 2.0E-24 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 108 118 - T 22-04-2016 IPR020549 Endoribonuclease YbeY, conserved site TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 SUPERFAMILY SSF55486 16 148 1.73E-33 T 22-04-2016 TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 PANTHER PTHR22881 40 148 2.1E-23 T 22-04-2016 TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 Pfam PF02130 Uncharacterized protein family UPF0054 26 137 1.9E-30 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 Gene3D G3DSA:3.40.390.30 16 144 4.8E-35 T 22-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 TRD_RS06045 174c66828ee417ba1e38602785cd9629 165 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 147 18.029 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 TRD_RS11560 87b846840bd98855060d245e76b12028 216 PANTHER PTHR10108:SF714 7 205 4.0E-30 T 22-04-2016 TRD_RS11560 87b846840bd98855060d245e76b12028 216 PANTHER PTHR10108 7 205 4.0E-30 T 22-04-2016 TRD_RS11560 87b846840bd98855060d245e76b12028 216 Gene3D G3DSA:3.40.50.150 15 205 4.9E-33 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS11560 87b846840bd98855060d245e76b12028 216 Pfam PF08241 Methyltransferase domain 60 154 1.8E-21 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 TRD_RS11560 87b846840bd98855060d245e76b12028 216 SUPERFAMILY SSF53335 22 204 5.21E-34 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS08260 0b122ddec9f7e36e6c69529e5dbb5219 186 Gene3D G3DSA:3.40.50.360 3 186 1.7E-54 T 22-04-2016 IPR029039 Flavoprotein-like domain TRD_RS08260 0b122ddec9f7e36e6c69529e5dbb5219 186 Pfam PF03358 NADPH-dependent FMN reductase 7 152 4.4E-39 T 22-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 TRD_RS08260 0b122ddec9f7e36e6c69529e5dbb5219 186 SUPERFAMILY SSF52218 7 178 4.86E-45 T 22-04-2016 IPR029039 Flavoprotein-like domain TRD_RS08260 0b122ddec9f7e36e6c69529e5dbb5219 186 PANTHER PTHR30543:SF6 2 185 2.1E-52 T 22-04-2016 TRD_RS08260 0b122ddec9f7e36e6c69529e5dbb5219 186 PANTHER PTHR30543 2 185 2.1E-52 T 22-04-2016 TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 SUPERFAMILY SSF52096 41 164 4.68E-43 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 SUPERFAMILY SSF52096 193 253 4.68E-43 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 Gene3D G3DSA:3.90.226.10 194 270 4.1E-58 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 Gene3D G3DSA:3.90.226.10 28 156 4.1E-58 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 Pfam PF01343 Peptidase family S49 117 267 1.5E-52 T 22-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 48 265 6.8E-70 T 22-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 TRD_RS05935 d4587242713dec1fb95d22d16a08be8b 321 PANTHER PTHR33209 33 287 2.9E-88 T 22-04-2016 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 281 314 - T 22-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 SUPERFAMILY SSF53218 206 350 4.45E-37 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:2.40.340.10 360 427 3.2E-21 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 SUPERFAMILY SSF63867 354 431 1.96E-20 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Pfam PF03454 MoeA C-terminal region (domain IV) 358 428 2.2E-18 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 196 1.5E-37 T 22-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 SUPERFAMILY SSF63882 12 205 1.83E-53 T 22-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 206 341 2.4E-27 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Pfam PF00994 Probable molybdopterin binding domain 209 343 1.4E-21 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:2.170.190.11 57 160 5.2E-31 T 22-04-2016 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:3.90.105.10 161 191 3.4E-19 T 22-04-2016 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 SMART SM00852 209 345 4.9E-33 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 PANTHER PTHR10192 14 442 4.9E-156 T 22-04-2016 TRD_RS04240 ec55323e273aa1d26e44375305e0228a 442 Gene3D G3DSA:3.40.980.10 192 359 5.8E-54 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS03170 3af9caf0959241af961cab7c1f960401 234 Gene3D G3DSA:1.10.10.630 139 201 6.7E-16 T 22-04-2016 IPR006343 Replication protein, DnaD/DnaB domain TRD_RS03170 3af9caf0959241af961cab7c1f960401 234 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 142 201 3.1E-11 T 22-04-2016 IPR006343 Replication protein, DnaD/DnaB domain TRD_RS03170 3af9caf0959241af961cab7c1f960401 234 SUPERFAMILY SSF158499 141 201 1.07E-13 T 22-04-2016 IPR006343 Replication protein, DnaD/DnaB domain TRD_RS03170 3af9caf0959241af961cab7c1f960401 234 Pfam PF07261 Replication initiation and membrane attachment 143 201 1.5E-10 T 22-04-2016 IPR006343 Replication protein, DnaD/DnaB domain TRD_RS09185 3da89e15f647fc4e1b0b5ed1e9080672 168 Gene3D G3DSA:2.30.30.240 2 61 4.7E-8 T 22-04-2016 TRD_RS09185 3da89e15f647fc4e1b0b5ed1e9080672 168 Gene3D G3DSA:2.30.30.240 77 144 1.4E-14 T 22-04-2016 TRD_RS09185 3da89e15f647fc4e1b0b5ed1e9080672 168 SUPERFAMILY SSF50346 1 62 3.14E-7 T 22-04-2016 IPR011033 PRC-barrel-like TRD_RS09185 3da89e15f647fc4e1b0b5ed1e9080672 168 Pfam PF05239 PRC-barrel domain 77 147 5.5E-10 T 22-04-2016 IPR027275 PRC-barrel domain TRD_RS09185 3da89e15f647fc4e1b0b5ed1e9080672 168 Pfam PF05239 PRC-barrel domain 1 61 1.2E-5 T 22-04-2016 IPR027275 PRC-barrel domain TRD_RS09185 3da89e15f647fc4e1b0b5ed1e9080672 168 SUPERFAMILY SSF50346 76 145 9.61E-13 T 22-04-2016 IPR011033 PRC-barrel-like TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 TIGRFAM TIGR00767 rho: transcription termination factor Rho 22 431 2.6E-195 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 SUPERFAMILY SSF68912 21 65 1.02E-8 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 SUPERFAMILY SSF52540 107 385 1.15E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 Pfam PF07498 Rho termination factor, N-terminal domain 24 66 8.0E-13 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 SUPERFAMILY SSF50249 68 142 3.39E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 SMART SM00382 184 369 2.2E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 PANTHER PTHR15184 1 430 3.8E-175 T 22-04-2016 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 Gene3D G3DSA:3.40.50.300 149 430 1.4E-94 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 174 377 1.6E-21 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 433 212.838 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 SMART SM00959 24 66 8.5E-13 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 Gene3D G3DSA:2.40.50.140 22 142 4.6E-48 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 SMART SM00357 71 135 3.6E-16 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 PANTHER PTHR15184:SF34 1 430 3.8E-175 T 22-04-2016 TRD_RS01565 e33ab3e0d88ecd0dcf5672984330f431 434 Pfam PF07497 Rho termination factor, RNA-binding domain 71 142 3.8E-34 T 22-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 Gene3D G3DSA:3.40.50.300 100 207 9.6E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 Gene3D G3DSA:3.40.50.300 17 40 9.6E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 Gene3D G3DSA:3.30.63.10 47 99 2.8E-24 T 22-04-2016 TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 Pfam PF00625 Guanylate kinase 18 198 5.2E-43 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 SUPERFAMILY SSF52540 16 204 7.11E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 PANTHER PTHR23117 18 211 6.2E-81 T 22-04-2016 TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 19 197 1.9E-61 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 SMART SM00072 17 201 7.4E-58 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 Hamap MF_00328 Guanylate kinase [gmk]. 16 201 31.714 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 TRD_RS07550 0358f4d931bd8438c46eb53cfcc902bc 211 ProSitePatterns PS00856 Guanylate kinase-like signature. 52 69 - T 22-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 PANTHER PTHR13779:SF7 1 235 1.7E-108 T 22-04-2016 TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 Pfam PF16193 AAA C-terminal domain 170 235 3.4E-17 T 22-04-2016 IPR032423 AAA ATPase, C-terminal domain TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 SMART SM00382 29 146 3.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 PANTHER PTHR13779 1 235 1.7E-108 T 22-04-2016 TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 Gene3D G3DSA:3.40.50.300 1 134 3.6E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 33 142 2.6E-18 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 SUPERFAMILY SSF52540 1 212 2.98E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS11200 c560e8d6f938f40ae1c92c06bb1b81dd 235 Gene3D G3DSA:1.10.8.60 135 215 2.2E-14 T 22-04-2016 TRD_RS12335 3a8e2371508ce5569abd74116bb5c913 234 Pfam PF03796 DnaB-like helicase C terminal domain 30 234 1.2E-92 T 22-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 TRD_RS12335 3a8e2371508ce5569abd74116bb5c913 234 SUPERFAMILY SSF52540 28 234 7.96E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS12335 3a8e2371508ce5569abd74116bb5c913 234 PANTHER PTHR30153 2 234 2.1E-116 T 22-04-2016 TRD_RS12335 3a8e2371508ce5569abd74116bb5c913 234 Gene3D G3DSA:3.40.50.300 16 234 7.7E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07385 2000676c0d8c53dc1134561d960f60bc 335 Gene3D G3DSA:3.20.20.210 7 327 1.3E-37 T 22-04-2016 TRD_RS07385 2000676c0d8c53dc1134561d960f60bc 335 SUPERFAMILY SSF51726 6 330 2.22E-44 T 22-04-2016 TRD_RS07385 2000676c0d8c53dc1134561d960f60bc 335 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 7 327 2.3E-32 T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS06365 1527377b6cc71f83ca31ff50a0809836 241 SUPERFAMILY SSF102588 16 238 6.93E-51 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS06365 1527377b6cc71f83ca31ff50a0809836 241 PANTHER PTHR12993 4 205 1.5E-38 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS06365 1527377b6cc71f83ca31ff50a0809836 241 Gene3D G3DSA:3.40.50.10320 16 238 1.2E-59 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS06365 1527377b6cc71f83ca31ff50a0809836 241 Pfam PF02585 GlcNAc-PI de-N-acetylase 19 146 4.6E-32 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 PANTHER PTHR11911 4 66 1.0E-32 T 22-04-2016 TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 PANTHER PTHR11911 94 147 1.0E-32 T 22-04-2016 TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 SMART SM00116 103 151 3.2E-8 T 22-04-2016 IPR000644 CBS domain TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 SMART SM00116 14 62 5.6E-12 T 22-04-2016 IPR000644 CBS domain TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 Pfam PF00571 CBS domain 7 59 2.9E-14 T 22-04-2016 IPR000644 CBS domain TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 Pfam PF00571 CBS domain 97 147 1.9E-14 T 22-04-2016 IPR000644 CBS domain TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 Gene3D G3DSA:3.20.20.70 4 148 1.1E-35 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS03740 e4e93cb42ad7454171a32681f28dec71 166 SUPERFAMILY SSF54631 4 147 2.65E-37 T 22-04-2016 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 Gene3D G3DSA:1.20.1200.10 12 172 7.2E-47 T 22-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 PANTHER PTHR12213 2 171 3.0E-48 T 22-04-2016 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 PANTHER PTHR12213:SF0 2 171 3.0E-48 T 22-04-2016 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 3 171 1.6E-42 T 22-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 SUPERFAMILY SSF89028 2 172 4.71E-50 T 22-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 8 142 2.0E-19 T 22-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 TRD_RS02530 b244bac7e9badb0df24961015aecadce 179 Pfam PF01923 Cobalamin adenosyltransferase 3 164 1.8E-46 T 22-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 PANTHER PTHR34218 12 784 2.1E-174 T 22-04-2016 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 Pfam PF01804 Penicillin amidase 42 771 1.4E-182 T 22-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 SUPERFAMILY SSF56235 37 782 4.63E-181 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 Gene3D G3DSA:2.30.120.10 318 380 1.1E-8 T 22-04-2016 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 Gene3D G3DSA:1.10.439.10 27 190 4.6E-45 T 22-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 PIRSF PIRSF001227 1 783 1.1E-166 T 22-04-2016 IPR014395 Penicillin acylase GO:0016811 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 PANTHER PTHR34218:SF2 12 784 2.1E-174 T 22-04-2016 TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 Gene3D G3DSA:3.60.20.10 242 317 6.6E-86 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS05195 e0dad4a6083939d95052154fcdb5f429 784 Gene3D G3DSA:3.60.20.10 392 593 6.6E-86 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal TRD_RS01545 fc5b7c8ffe35e25cdca69f4033c0d511 139 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 23 126 1.3E-20 T 22-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 TRD_RS01545 fc5b7c8ffe35e25cdca69f4033c0d511 139 SUPERFAMILY SSF81343 22 129 9.37E-21 T 22-04-2016 TRD_RS01545 fc5b7c8ffe35e25cdca69f4033c0d511 139 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 21 121 2.7E-20 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 TRD_RS01545 fc5b7c8ffe35e25cdca69f4033c0d511 139 Gene3D G3DSA:1.20.1300.10 23 129 4.2E-24 T 22-04-2016 TRD_RS01545 fc5b7c8ffe35e25cdca69f4033c0d511 139 PANTHER PTHR41910 18 139 2.3E-26 T 22-04-2016 TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.9E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.9E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 PANTHER PTHR30055 9 176 1.4E-27 T 22-04-2016 TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 SUPERFAMILY SSF46689 8 75 7.48E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 SUPERFAMILY SSF48498 82 190 1.81E-11 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 Gene3D G3DSA:1.10.357.10 8 191 3.4E-36 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 TRD_RS13590 9cef069b1a740cc28180b220e353e159 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 2.7E-16 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 SMART SM00937 59 167 1.6E-47 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 Pfam PF00472 RF-1 domain 201 310 2.3E-41 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 Gene3D G3DSA:1.20.58.410 2 88 1.3E-19 T 22-04-2016 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 337 1.4E-146 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 338 36.704 T 22-04-2016 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 SUPERFAMILY SSF75620 6 339 4.05E-127 T 22-04-2016 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 Gene3D G3DSA:3.30.160.20 200 278 3.9E-37 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain TRD_RS07655 61a930f6d618771c9246c05c01789902 350 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 217 233 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 PANTHER PTHR11075 1 345 9.7E-153 T 22-04-2016 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 Pfam PF03462 PCRF domain 5 192 2.3E-59 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 TRD_RS07655 61a930f6d618771c9246c05c01789902 350 PANTHER PTHR11075:SF6 1 345 9.7E-153 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 Pfam PF13416 Bacterial extracellular solute-binding protein 110 420 6.6E-34 T 22-04-2016 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 PANTHER PTHR30061 77 482 1.8E-56 T 22-04-2016 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 PANTHER PTHR30061 4 54 1.8E-56 T 22-04-2016 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 PANTHER PTHR30061:SF1 77 482 1.8E-56 T 22-04-2016 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 PANTHER PTHR30061:SF1 4 54 1.8E-56 T 22-04-2016 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 SUPERFAMILY SSF53850 86 437 7.58E-56 T 22-04-2016 TRD_RS05290 d16c89c118bbeb756186cb6e2db6b139 482 Gene3D G3DSA:3.40.190.10 205 403 1.7E-31 T 22-04-2016 TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 PANTHER PTHR34655 5 72 1.4E-46 T 22-04-2016 TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 PANTHER PTHR34655 88 173 1.4E-46 T 22-04-2016 TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 SUPERFAMILY SSF75169 115 172 4.45E-21 T 22-04-2016 IPR027396 DsrEFH-like TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 SUPERFAMILY SSF75169 11 56 4.45E-21 T 22-04-2016 IPR027396 DsrEFH-like TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 Pfam PF13686 DsrE/DsrF/DrsH-like family 11 172 2.1E-47 T 22-04-2016 IPR032836 DsrE/DsrF/DrsH-like family TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 Gene3D G3DSA:3.40.1260.10 9 173 1.0E-49 T 22-04-2016 IPR027396 DsrEFH-like TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 PANTHER PTHR34655:SF2 5 72 1.4E-46 T 22-04-2016 TRD_RS00770 cde3c9eeddf3d8c56cc9746f52a95d46 173 PANTHER PTHR34655:SF2 88 173 1.4E-46 T 22-04-2016 TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 8.4E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.4E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.4E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.4E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.4E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.4E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 Gene3D G3DSA:3.40.50.720 1 247 1.5E-85 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PANTHER PTHR24322 11 140 7.2E-52 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PANTHER PTHR24322 156 192 7.2E-52 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 SUPERFAMILY SSF51735 6 247 1.12E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.0E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.0E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.0E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS04180 4628946615d5ed56da500255bb1819cd 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 2.4E-65 T 22-04-2016 TRD_RS03345 47b4c5ce5950f0b825b473d7e74185c0 95 Pfam PF06153 Cyclic-di-AMP receptor 1 73 8.1E-27 T 22-04-2016 IPR010375 Cyclic-di-AMP receptor TRD_RS03345 47b4c5ce5950f0b825b473d7e74185c0 95 SUPERFAMILY SSF54913 1 94 1.08E-13 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta TRD_RS03345 47b4c5ce5950f0b825b473d7e74185c0 95 Gene3D G3DSA:3.30.70.120 1 94 2.4E-13 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal TRD_RS03345 47b4c5ce5950f0b825b473d7e74185c0 95 PANTHER PTHR38456 2 90 4.7E-25 T 22-04-2016 TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 SUPERFAMILY SSF52540 19 244 5.59E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 PANTHER PTHR24220:SF589 20 241 4.9E-88 T 22-04-2016 TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 PANTHER PTHR24220 20 241 4.9E-88 T 22-04-2016 TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 SMART SM00382 47 238 4.3E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 Gene3D G3DSA:3.40.50.300 11 229 3.0E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS01490 1c9acd248074ee15d6fe3a9ebbecde7d 274 Pfam PF00005 ABC transporter 38 175 5.4E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS08355 4529de66a7d299038109cb808c7414cc 495 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 484 17.877 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 TRD_RS08355 4529de66a7d299038109cb808c7414cc 495 PANTHER PTHR22773:SF41 2 489 6.1E-152 T 22-04-2016 TRD_RS08355 4529de66a7d299038109cb808c7414cc 495 Pfam PF00361 Proton-conducting membrane transporter 131 432 8.5E-72 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 TRD_RS08355 4529de66a7d299038109cb808c7414cc 495 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 12 483 3.2E-125 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 TRD_RS08355 4529de66a7d299038109cb808c7414cc 495 PANTHER PTHR22773 2 489 6.1E-152 T 22-04-2016 TRD_RS07820 184939277cb64547340dc85a17af13fd 458 Pfam PF06271 RDD family 270 404 8.5E-21 T 22-04-2016 IPR010432 RDD TRD_RS03825 bd89a52d23184321a00b425432bfc753 125 SUPERFAMILY SSF55486 6 122 4.23E-32 T 22-04-2016 TRD_RS03825 bd89a52d23184321a00b425432bfc753 125 Pfam PF06262 Zinicin-like metallopeptidase 29 123 2.2E-27 T 22-04-2016 IPR010428 Zinicin-like metallopeptidase TRD_RS03825 bd89a52d23184321a00b425432bfc753 125 PANTHER PTHR41522 1 125 2.8E-31 T 22-04-2016 TRD_RS07570 f79a33c3de7583978763b7c36cda372d 141 SUPERFAMILY SSF48013 6 136 1.96E-41 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 TRD_RS07570 f79a33c3de7583978763b7c36cda372d 141 Pfam PF01029 NusB family 8 133 2.3E-39 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 TRD_RS07570 f79a33c3de7583978763b7c36cda372d 141 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 5 137 22.075 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 TRD_RS07570 f79a33c3de7583978763b7c36cda372d 141 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 7 135 1.6E-43 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 TRD_RS07570 f79a33c3de7583978763b7c36cda372d 141 PANTHER PTHR11078 1 137 4.0E-45 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 TRD_RS07570 f79a33c3de7583978763b7c36cda372d 141 Gene3D G3DSA:1.10.940.10 6 136 6.0E-46 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 TRD_RS05640 4de1b54c5e62c62cc80a69c04c50113c 298 SUPERFAMILY SSF52540 114 257 4.91E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05640 4de1b54c5e62c62cc80a69c04c50113c 298 SUPERFAMILY SSF52540 27 81 4.91E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05640 4de1b54c5e62c62cc80a69c04c50113c 298 Pfam PF07728 AAA domain (dynein-related subfamily) 40 193 5.0E-12 T 22-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 TRD_RS05640 4de1b54c5e62c62cc80a69c04c50113c 298 Gene3D G3DSA:3.40.50.300 30 221 1.6E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05640 4de1b54c5e62c62cc80a69c04c50113c 298 PANTHER PTHR22908 6 284 7.1E-90 T 22-04-2016 TRD_RS05640 4de1b54c5e62c62cc80a69c04c50113c 298 PANTHER PTHR22908:SF67 6 284 7.1E-90 T 22-04-2016 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 10 281 1.4E-101 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 Pfam PF01039 Carboxyl transferase domain 57 242 1.3E-13 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PANTHER PTHR22855:SF17 5 281 1.1E-124 T 22-04-2016 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 3.7E-29 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 3.7E-29 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 3.7E-29 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 3.7E-29 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 3.7E-29 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 Gene3D G3DSA:3.90.226.10 20 282 2.9E-63 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 SUPERFAMILY SSF52096 26 285 8.5E-77 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 PANTHER PTHR22855 5 281 1.1E-124 T 22-04-2016 TRD_RS05890 1146adfaf60bafbec824b1a09324586a 300 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 283 37.24 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 TRD_RS01495 bceadd5a092689d0407c7d5261b0d003 277 PANTHER PTHR30151 14 272 1.5E-59 T 22-04-2016 TRD_RS01495 bceadd5a092689d0407c7d5261b0d003 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 271 1.2E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01495 bceadd5a092689d0407c7d5261b0d003 277 Gene3D G3DSA:1.10.3720.10 74 267 2.7E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01495 bceadd5a092689d0407c7d5261b0d003 277 SUPERFAMILY SSF161098 74 255 7.33E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS13920 f1b995ff37ce634c0019fa75921055c5 166 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 118 166 5.3E-18 T 22-04-2016 IPR001162 UvrC family homology region TRD_RS13920 f1b995ff37ce634c0019fa75921055c5 166 PANTHER PTHR30562:SF1 1 166 8.9E-52 T 22-04-2016 TRD_RS13920 f1b995ff37ce634c0019fa75921055c5 166 PANTHER PTHR30562 1 166 8.9E-52 T 22-04-2016 TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 185 30.699 T 22-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 184 2.5E-57 T 22-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 Pfam PF00692 dUTPase 74 175 8.3E-9 T 22-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 SUPERFAMILY SSF51283 1 186 5.1E-49 T 22-04-2016 IPR029054 dUTPase-like TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 PANTHER PTHR11241:SF7 1 187 1.6E-55 T 22-04-2016 TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 Gene3D G3DSA:2.70.40.10 1 185 4.3E-54 T 22-04-2016 IPR029054 dUTPase-like TRD_RS02525 bb6e093d6089cbe171aa57a595bcae67 197 PANTHER PTHR11241 1 187 1.6E-55 T 22-04-2016 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 22-04-2016 IPR020081 SsrA-binding protein, conserved site TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 Pfam PF01668 SmpB protein 14 76 9.1E-31 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 PANTHER PTHR30308 2 160 2.5E-74 T 22-04-2016 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 1.0E-39 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 67.207 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 3.3E-54 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 Gene3D G3DSA:2.40.280.10 13 134 2.7E-48 T 22-04-2016 IPR023620 Small protein B TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 PANTHER PTHR30308:SF2 2 160 2.5E-74 T 22-04-2016 TRD_RS01145 8f50b7e861f9ce6d05cb6a3e0b1ab299 160 SUPERFAMILY SSF74982 9 139 9.16E-49 T 22-04-2016 IPR023620 Small protein B TRD_RS05500 b70a249ec5ee7421eb1275e0cc0fc946 229 SUPERFAMILY SSF46955 23 73 9.61E-13 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS05500 b70a249ec5ee7421eb1275e0cc0fc946 229 Pfam PF12728 Helix-turn-helix domain 23 72 1.4E-13 T 22-04-2016 TRD_RS05500 b70a249ec5ee7421eb1275e0cc0fc946 229 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 23 71 3.1E-11 T 22-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 TRD_RS05500 b70a249ec5ee7421eb1275e0cc0fc946 229 Gene3D G3DSA:1.10.1660.10 25 69 2.0E-11 T 22-04-2016 TRD_RS05500 b70a249ec5ee7421eb1275e0cc0fc946 229 PANTHER PTHR30204 16 70 4.9E-12 T 22-04-2016 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 78 93 - T 22-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 Hamap MF_00013 Octanoyltransferase [lipB]. 5 203 31.352 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 82 135 3.0E-8 T 22-04-2016 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 166 8.4E-6 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 30 200 1.5E-46 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 SUPERFAMILY SSF55681 6 202 1.66E-61 T 22-04-2016 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 PANTHER PTHR10993 6 204 4.3E-77 T 22-04-2016 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 PIRSF PIRSF016262 4 203 8.2E-61 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00815 946cebbdd57ce3ab8538ac193c81f46e 204 Gene3D G3DSA:3.90.1550.10 6 202 3.5E-68 T 22-04-2016 TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 PANTHER PTHR24220 9 229 2.1E-104 T 22-04-2016 TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 SMART SM00382 36 221 2.4E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 PANTHER PTHR24220:SF578 9 229 2.1E-104 T 22-04-2016 TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 Gene3D G3DSA:3.40.50.300 6 225 1.4E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 SUPERFAMILY SSF52540 7 225 4.05E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01080 8f9ffa8e23f98ffa174c69908902dccc 234 Pfam PF00005 ABC transporter 27 173 8.9E-38 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS00310 c5cbedff840e715e05834e9fcc632f49 239 Pfam PF08478 POTRA domain, FtsQ-type 44 109 9.1E-13 T 22-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type TRD_RS00310 c5cbedff840e715e05834e9fcc632f49 239 PANTHER PTHR37820 3 235 1.2E-17 T 22-04-2016 TRD_RS00310 c5cbedff840e715e05834e9fcc632f49 239 Pfam PF03799 Cell division protein FtsQ 114 226 7.5E-6 T 22-04-2016 IPR005548 Cell division protein FtsQ/DivIB TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 PANTHER PTHR24220 5 323 1.0E-95 T 22-04-2016 TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 SUPERFAMILY SSF52540 4 261 4.85E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 SMART SM00382 37 239 1.2E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 Pfam PF00005 ABC transporter 39 181 2.4E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 299 1.1E-12 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 319 3.4E-17 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 Gene3D G3DSA:3.40.50.300 2 254 9.1E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS09130 db748c8570d05dcb162cee375df678a1 347 PANTHER PTHR24220:SF592 5 323 1.0E-95 T 22-04-2016 TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 PRINTS PR00625 DnaJ domain signature 32 47 4.2E-13 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 PRINTS PR00625 DnaJ domain signature 52 72 4.2E-13 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 PRINTS PR00625 DnaJ domain signature 14 32 4.2E-13 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 SMART SM00271 11 72 6.4E-23 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 SUPERFAMILY SSF46565 10 76 1.83E-25 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 Pfam PF00226 DnaJ domain 12 77 2.6E-21 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 PANTHER PTHR24074 9 78 3.6E-24 T 22-04-2016 TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 Gene3D G3DSA:1.10.287.110 10 81 3.8E-24 T 22-04-2016 IPR001623 DnaJ domain TRD_RS01330 555dd915a9cee30dfd3326f389eef670 152 PANTHER PTHR24074:SF10 9 78 3.6E-24 T 22-04-2016 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 Gene3D G3DSA:3.40.50.2000 8 208 8.4E-54 T 22-04-2016 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 11 149 8.0E-32 T 22-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 PANTHER PTHR21015 6 388 8.0E-98 T 22-04-2016 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 SUPERFAMILY SSF53756 10 376 8.53E-96 T 22-04-2016 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 11 375 31.615 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 8 371 2.0E-80 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 PANTHER PTHR21015:SF22 6 388 8.0E-98 T 22-04-2016 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 Gene3D G3DSA:3.40.50.2000 269 350 4.4E-8 T 22-04-2016 TRD_RS04760 919477bcb03a4563c981abcb23ef630a 390 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 195 352 1.8E-33 T 22-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 TRD_RS01730 d22f68bc2369b18d4c9cde3de2bfcf3d 202 PANTHER PTHR10587 7 196 5.5E-41 T 22-04-2016 TRD_RS01730 d22f68bc2369b18d4c9cde3de2bfcf3d 202 SUPERFAMILY SSF88713 3 199 1.58E-50 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 TRD_RS01730 d22f68bc2369b18d4c9cde3de2bfcf3d 202 Gene3D G3DSA:3.20.20.370 3 199 1.8E-52 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 TRD_RS01730 d22f68bc2369b18d4c9cde3de2bfcf3d 202 Pfam PF01522 Polysaccharide deacetylase 4 133 4.2E-23 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 PANTHER PTHR30121 40 504 2.4E-13 T 22-04-2016 TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 SUPERFAMILY SSF52540 148 369 5.84E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 SUPERFAMILY SSF52540 411 505 5.84E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 SMART SM00382 176 508 9.7E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 Gene3D G3DSA:3.40.50.300 388 501 2.6E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 Gene3D G3DSA:3.40.50.300 176 260 2.6E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06640 964c145384d47d0ac72cb13685d9c0cc 589 Pfam PF01935 Domain of unknown function DUF87 179 263 4.5E-11 T 22-04-2016 IPR002789 Helicase HerA, central domain TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 Gene3D G3DSA:3.40.50.620 8 223 8.5E-72 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 PANTHER PTHR11587 6 222 1.4E-85 T 22-04-2016 TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 10 210 7.9E-61 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 Pfam PF06508 Queuosine biosynthesis protein QueC 9 217 3.9E-68 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 8 223 49.859 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 PIRSF PIRSF006293 6 226 7.1E-69 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 PANTHER PTHR11587:SF3 6 222 1.4E-85 T 22-04-2016 TRD_RS08400 ac09d2ec997fc19de18dcfcaf65bae29 226 SUPERFAMILY SSF52402 8 223 1.26E-56 T 22-04-2016 TRD_RS00220 eff75297cd97b71ac46534c14a2669b9 167 Gene3D G3DSA:3.40.630.30 21 159 1.2E-27 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS00220 eff75297cd97b71ac46534c14a2669b9 167 PANTHER PTHR23091 7 159 6.6E-24 T 22-04-2016 TRD_RS00220 eff75297cd97b71ac46534c14a2669b9 167 Pfam PF13508 Acetyltransferase (GNAT) domain 61 139 6.3E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 TRD_RS00220 eff75297cd97b71ac46534c14a2669b9 167 SUPERFAMILY SSF55729 19 160 7.98E-28 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 Gene3D G3DSA:1.10.3370.10 1 432 4.8E-140 T 22-04-2016 IPR023201 SecY subunit domain TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PANTHER PTHR10906 1 432 3.9E-174 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 431 28.032 T 22-04-2016 IPR026593 Protein translocase subunit SecY TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 22-04-2016 IPR030659 SecY conserved site TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PANTHER PTHR10906:SF2 1 432 3.9E-174 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 109 132 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 400 418 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 266 285 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 68 88 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 3.8E-88 T 22-04-2016 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 ProSitePatterns PS00755 Protein secY signature 1. 69 88 - T 22-04-2016 IPR030659 SecY conserved site TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 427 4.1E-115 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 Pfam PF00344 SecY translocase 69 415 3.1E-104 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 SUPERFAMILY SSF103491 1 422 2.48E-112 T 22-04-2016 IPR023201 SecY subunit domain TRD_RS04430 d79884ee5925928553788fa65a6e818d 432 PIRSF PIRSF004557 1 432 9.6E-118 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 TRD_RS04660 3290c419ddce8ae294f41791fd80fb8f 331 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 110 146 1.9E-8 T 22-04-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain TRD_RS04660 3290c419ddce8ae294f41791fd80fb8f 331 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 9 148 5.7E-27 T 22-04-2016 IPR017592 Pilus assembly, Flp-type CpaB TRD_RS04660 3290c419ddce8ae294f41791fd80fb8f 331 Pfam PF08666 SAF domain 45 105 4.1E-11 T 22-04-2016 IPR013974 SAF domain TRD_RS04660 3290c419ddce8ae294f41791fd80fb8f 331 SMART SM00858 44 106 1.6E-11 T 22-04-2016 IPR013974 SAF domain TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 Pfam PF00471 Ribosomal protein L33 10 56 5.8E-25 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 8.8E-26 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 PANTHER PTHR15238 1 55 1.2E-24 T 22-04-2016 TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 56 20.027 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 PANTHER PTHR15238:SF3 1 55 1.2E-24 T 22-04-2016 TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 24 43 - T 22-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03100 074ad2231d849f1cfafae29a6518d304 56 SUPERFAMILY SSF57829 4 56 3.43E-21 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 TRD_RS02520 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 140 294 4.9E-44 T 22-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain TRD_RS02520 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 PANTHER PTHR33392 39 375 5.3E-77 T 22-04-2016 TRD_RS02520 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 PANTHER PTHR33392:SF6 39 375 5.3E-77 T 22-04-2016 TRD_RS02520 ef5e2a1046f4cc4ac76ec8eaea3ec4c3 484 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 139 294 4.2E-37 T 22-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain TRD_RS00415 356c958b387838e556064953776c84aa 378 Pfam PF00534 Glycosyl transferases group 1 186 343 8.7E-36 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS00415 356c958b387838e556064953776c84aa 378 PANTHER PTHR12526 1 370 1.1E-54 T 22-04-2016 TRD_RS00415 356c958b387838e556064953776c84aa 378 Gene3D G3DSA:3.40.50.2000 180 343 2.9E-32 T 22-04-2016 TRD_RS00415 356c958b387838e556064953776c84aa 378 SUPERFAMILY SSF53756 21 365 1.77E-72 T 22-04-2016 TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 PIRSF PIRSF002161 7 188 7.0E-64 T 22-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 Gene3D G3DSA:3.30.1440.10 11 187 1.1E-74 T 22-04-2016 IPR022803 Ribosomal protein L5 domain TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 Pfam PF00281 Ribosomal protein L5 36 89 5.5E-25 T 22-04-2016 IPR031310 Ribosomal protein L5, N-terminal TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 10 188 44.545 T 22-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 PANTHER PTHR11994 7 187 5.8E-91 T 22-04-2016 TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 Pfam PF00673 ribosomal L5P family C-terminus 93 186 4.5E-40 T 22-04-2016 IPR031309 Ribosomal protein L5, C-terminal TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 SUPERFAMILY SSF55282 12 187 8.24E-75 T 22-04-2016 IPR022803 Ribosomal protein L5 domain TRD_RS04465 a9a8995e04fb05402a3376d709e0186f 188 ProSitePatterns PS00358 Ribosomal protein L5 signature. 66 82 - T 22-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS01485 89b23ff84e6d62338dea7a4317e6934a 273 Pfam PF02535 ZIP Zinc transporter 119 268 2.7E-17 T 22-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 TRD_RS01485 89b23ff84e6d62338dea7a4317e6934a 273 PANTHER PTHR11040:SF33 2 272 1.6E-110 T 22-04-2016 TRD_RS01485 89b23ff84e6d62338dea7a4317e6934a 273 PANTHER PTHR11040 2 272 1.6E-110 T 22-04-2016 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 SUPERFAMILY SSF53328 4 201 9.16E-51 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 5 192 26.448 T 22-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 Gene3D G3DSA:3.40.50.170 4 200 3.8E-54 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 PANTHER PTHR10520 5 198 1.5E-77 T 22-04-2016 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 Pfam PF00551 Formyl transferase 5 186 3.6E-40 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 5 196 5.7E-47 T 22-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 TRD_RS05515 dffa949adca9e1f90f358fdcc4ee72ad 207 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 22-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 TRD_RS03235 a1a2d2bb981404163607bb281e3723d6 686 PANTHER PTHR31998:SF0 6 680 0.0 T 22-04-2016 TRD_RS03235 a1a2d2bb981404163607bb281e3723d6 686 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 11 681 1.2E-249 T 22-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 TRD_RS03235 a1a2d2bb981404163607bb281e3723d6 686 PANTHER PTHR31998 6 680 0.0 T 22-04-2016 TRD_RS03235 a1a2d2bb981404163607bb281e3723d6 686 Pfam PF03030 Inorganic H+ pyrophosphatase 14 679 2.1E-263 T 22-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 TRD_RS03235 a1a2d2bb981404163607bb281e3723d6 686 PIRSF PIRSF001265 1 684 2.3E-256 T 22-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 TRD_RS03235 a1a2d2bb981404163607bb281e3723d6 686 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 3 684 25.372 T 22-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 TRD_RS03025 f6f8875c7fb50924d5cf68f79524f55c 149 SUPERFAMILY SSF54637 2 138 6.63E-49 T 22-04-2016 IPR029069 HotDog domain TRD_RS03025 f6f8875c7fb50924d5cf68f79524f55c 149 Pfam PF07977 FabA-like domain 11 133 1.8E-34 T 22-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 TRD_RS03025 f6f8875c7fb50924d5cf68f79524f55c 149 PANTHER PTHR30272 1 143 1.7E-77 T 22-04-2016 TRD_RS03025 f6f8875c7fb50924d5cf68f79524f55c 149 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 4 138 4.2E-56 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 TRD_RS03025 f6f8875c7fb50924d5cf68f79524f55c 149 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 141 34.192 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 TRD_RS03025 f6f8875c7fb50924d5cf68f79524f55c 149 Gene3D G3DSA:3.10.129.10 3 139 1.3E-55 T 22-04-2016 IPR029069 HotDog domain TRD_RS07900 eb15f97e0a74f2b219070a42b91ebbac 322 SUPERFAMILY SSF53474 45 320 1.79E-74 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS07900 eb15f97e0a74f2b219070a42b91ebbac 322 Pfam PF07859 alpha/beta hydrolase fold 87 295 9.0E-70 T 22-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 TRD_RS07900 eb15f97e0a74f2b219070a42b91ebbac 322 Gene3D G3DSA:3.40.50.1820 6 320 3.1E-94 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS07900 eb15f97e0a74f2b219070a42b91ebbac 322 PANTHER PTHR23024 70 322 7.3E-82 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.1E-6 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 193 208 8.1E-6 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.50.50.60 3 81 7.6E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.50.50.60 140 218 7.6E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.50.50.60 316 372 7.6E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 SUPERFAMILY SSF51905 316 371 9.71E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 SUPERFAMILY SSF51905 4 219 9.71E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 SUPERFAMILY SSF54373 221 315 1.31E-6 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 PANTHER PTHR13847 3 371 1.4E-68 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.30.9.10 86 139 1.4E-23 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 Gene3D G3DSA:3.30.9.10 219 315 1.4E-23 T 22-04-2016 TRD_RS00580 91c1b36943e2aee3b530e45c6a6a9739 388 Pfam PF01266 FAD dependent oxidoreductase 5 352 1.2E-58 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS00440 48f2de638c075982667e1d0382bed436 169 PANTHER PTHR31223:SF22 5 125 2.9E-32 T 22-04-2016 TRD_RS00440 48f2de638c075982667e1d0382bed436 169 PANTHER PTHR31223 5 125 2.9E-32 T 22-04-2016 TRD_RS00440 48f2de638c075982667e1d0382bed436 169 TIGRFAM TIGR00725 TIGR00725: TIGR00725 family protein 6 155 1.8E-38 T 22-04-2016 IPR005268 Conserved hypothetical protein CHP00725 TRD_RS00440 48f2de638c075982667e1d0382bed436 169 Pfam PF03641 Possible lysine decarboxylase 46 116 1.3E-4 T 22-04-2016 IPR031100 LOG family TRD_RS00440 48f2de638c075982667e1d0382bed436 169 SUPERFAMILY SSF102405 4 134 2.44E-30 T 22-04-2016 TRD_RS00440 48f2de638c075982667e1d0382bed436 169 Gene3D G3DSA:3.40.50.450 5 152 2.5E-28 T 22-04-2016 TRD_RS08940 c6baf7e869a844d4fe10cbf2fff6494e 155 Gene3D G3DSA:1.20.120.450 3 144 1.7E-20 T 22-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase TRD_RS08940 c6baf7e869a844d4fe10cbf2fff6494e 155 SUPERFAMILY SSF109854 3 143 8.85E-19 T 22-04-2016 TRD_RS08940 c6baf7e869a844d4fe10cbf2fff6494e 155 Pfam PF12867 DinB superfamily 35 139 4.3E-11 T 22-04-2016 IPR024775 DinB-like domain TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 Gene3D G3DSA:3.30.420.80 17 136 2.6E-55 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 Pfam PF00411 Ribosomal protein S11 27 136 1.5E-48 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 PIRSF PIRSF002131 9 137 4.6E-53 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 137 33.941 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 18 134 2.5E-59 T 22-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 SUPERFAMILY SSF53137 22 136 1.02E-50 T 22-04-2016 TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 ProSitePatterns PS00054 Ribosomal protein S11 signature. 105 127 - T 22-04-2016 IPR018102 Ribosomal S11, conserved site TRD_RS04400 6281a74ca974c5928745e21f63ec49f9 137 PANTHER PTHR11759 18 137 3.5E-66 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 TRD_RS06110 798695441e4b9ac892aa183759b1e7c5 274 SUPERFAMILY SSF102705 33 255 4.45E-6 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 PANTHER PTHR13789 7 370 4.8E-20 T 22-04-2016 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 4.7E-6 T 22-04-2016 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 4.7E-6 T 22-04-2016 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 4.7E-6 T 22-04-2016 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 Pfam PF01494 FAD binding domain 9 173 1.7E-8 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 Gene3D G3DSA:3.50.50.60 285 325 6.2E-26 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 Gene3D G3DSA:3.50.50.60 7 176 6.2E-26 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 SUPERFAMILY SSF51905 8 173 2.77E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS02605 f836ef4416d35c2f6a3f930d891c8744 418 SUPERFAMILY SSF51905 282 370 2.77E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS13480 07400ab35e76a4605854097a0989f89b 136 PANTHER PTHR34796 22 88 1.2E-14 T 22-04-2016 TRD_RS13480 07400ab35e76a4605854097a0989f89b 136 Pfam PF03745 Domain of unknown function (DUF309) 22 76 1.6E-18 T 22-04-2016 IPR005500 Protein of unknown function DUF309 TRD_RS13480 07400ab35e76a4605854097a0989f89b 136 SUPERFAMILY SSF140663 13 114 3.01E-28 T 22-04-2016 IPR023203 TTHA0068-like domain TRD_RS13480 07400ab35e76a4605854097a0989f89b 136 PANTHER PTHR34796:SF1 22 88 1.2E-14 T 22-04-2016 TRD_RS13480 07400ab35e76a4605854097a0989f89b 136 Gene3D G3DSA:1.10.3450.10 12 113 1.0E-27 T 22-04-2016 IPR023203 TTHA0068-like domain TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 PANTHER PTHR11922:SF5 14 30 6.5E-123 T 22-04-2016 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 PANTHER PTHR11922:SF5 64 339 6.5E-123 T 22-04-2016 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 Pfam PF00591 Glycosyl transferase family, a/b domain 74 328 3.7E-100 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 4 337 39.721 T 22-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 PANTHER PTHR11922 14 30 6.5E-123 T 22-04-2016 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 PANTHER PTHR11922 64 339 6.5E-123 T 22-04-2016 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 6 334 1.0E-127 T 22-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 Gene3D G3DSA:3.40.1030.10 74 339 1.7E-113 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 Gene3D G3DSA:1.20.970.10 5 69 5.4E-24 T 22-04-2016 TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 64 1.8E-17 T 22-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 SUPERFAMILY SSF47648 2 68 8.63E-18 T 22-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain TRD_RS00500 387a1754ae252d73c9c382d19f3d6e94 348 SUPERFAMILY SSF52418 74 340 2.09E-97 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 PANTHER PTHR23046 1 154 6.5E-85 T 22-04-2016 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 1 150 29.811 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 SMART SM01001 1 146 7.9E-96 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 Gene3D G3DSA:3.40.50.7700 1 151 1.0E-72 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 1 151 1.3E-65 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 Pfam PF00731 AIR carboxylase 1 143 6.3E-63 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 SUPERFAMILY SSF52255 1 153 6.28E-65 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 PIRSF PIRSF001338 1 154 1.1E-63 T 22-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS02950 8f8ccdb9ecabd9ad2cb64a5ad2debf50 156 PANTHER PTHR23046:SF2 1 154 6.5E-85 T 22-04-2016 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 6 337 3.7E-126 T 22-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 SUPERFAMILY SSF51726 3 341 4.19E-110 T 22-04-2016 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 19 28 - T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 PANTHER PTHR21091 7 343 7.3E-133 T 22-04-2016 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 3 339 48.444 T 22-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 Gene3D G3DSA:3.20.20.210 3 340 7.6E-140 T 22-04-2016 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 338 2.5E-127 T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 PANTHER PTHR21091:SF2 7 343 7.3E-133 T 22-04-2016 TRD_RS06500 957aa4042ab41bafeb26c9d267c63e86 344 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 137 153 - T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 PANTHER PTHR10381 10 198 5.1E-119 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 Gene3D G3DSA:3.90.226.10 11 198 2.1E-76 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 Pfam PF00574 Clp protease 19 198 2.3E-78 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 4.1E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 4.1E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 4.1E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 4.1E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 4.1E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 41.382 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 TRD_RS05605 0a6cb28218c00603ce3fe37aeab1765b 205 SUPERFAMILY SSF52096 18 200 1.62E-66 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS06135 7b7f6bb9cdc361946a79532f15bedba6 155 Gene3D G3DSA:3.10.129.10 9 139 7.9E-46 T 22-04-2016 IPR029069 HotDog domain TRD_RS06135 7b7f6bb9cdc361946a79532f15bedba6 155 PANTHER PTHR12418 32 148 2.6E-21 T 22-04-2016 TRD_RS06135 7b7f6bb9cdc361946a79532f15bedba6 155 Pfam PF03061 Thioesterase superfamily 50 120 1.7E-13 T 22-04-2016 IPR006683 Thioesterase domain TRD_RS06135 7b7f6bb9cdc361946a79532f15bedba6 155 SUPERFAMILY SSF54637 11 133 1.5E-35 T 22-04-2016 IPR029069 HotDog domain TRD_RS06135 7b7f6bb9cdc361946a79532f15bedba6 155 PANTHER PTHR12418:SF16 32 148 2.6E-21 T 22-04-2016 TRD_RS13615 25f34bc4e4ac30096c42f2e28e7d28de 464 PANTHER PTHR10657 24 174 2.0E-38 T 22-04-2016 TRD_RS13615 25f34bc4e4ac30096c42f2e28e7d28de 464 PANTHER PTHR10657 243 414 2.0E-38 T 22-04-2016 TRD_RS13615 25f34bc4e4ac30096c42f2e28e7d28de 464 Gene3D G3DSA:3.10.50.40 289 399 3.4E-35 T 22-04-2016 TRD_RS13615 25f34bc4e4ac30096c42f2e28e7d28de 464 SUPERFAMILY SSF109998 66 163 5.1E-6 T 22-04-2016 IPR027304 Trigger factor/SurA domain TRD_RS13615 25f34bc4e4ac30096c42f2e28e7d28de 464 SUPERFAMILY SSF54534 289 379 4.84E-30 T 22-04-2016 TRD_RS13615 25f34bc4e4ac30096c42f2e28e7d28de 464 Pfam PF00639 PPIC-type PPIASE domain 301 377 1.3E-22 T 22-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 PANTHER PTHR24031:SF261 6 511 2.3E-198 T 22-04-2016 TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 Pfam PF00271 Helicase conserved C-terminal domain 229 337 6.4E-31 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 SUPERFAMILY SSF52540 72 358 2.35E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 Gene3D G3DSA:3.40.50.300 210 374 4.5E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 SMART SM00490 256 337 1.7E-38 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 Pfam PF03880 DbpA RNA binding domain 450 520 1.3E-25 T 22-04-2016 IPR005580 DbpA, RNA-binding domain TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 Gene3D G3DSA:3.40.50.300 4 209 1.1E-80 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 SMART SM00487 23 215 3.5E-63 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 PANTHER PTHR24031 6 511 2.3E-198 T 22-04-2016 TRD_RS05255 ee9a96cfcedb1e24f818d68f5c511cd2 526 Pfam PF00270 DEAD/DEAH box helicase 29 191 5.6E-50 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS06355 c0f3408fedadbb9bf377183f11795868 395 PANTHER PTHR37560:SF2 30 377 3.6E-49 T 22-04-2016 TRD_RS06355 c0f3408fedadbb9bf377183f11795868 395 SUPERFAMILY SSF51998 19 375 2.93E-87 T 22-04-2016 TRD_RS06355 c0f3408fedadbb9bf377183f11795868 395 Gene3D G3DSA:3.20.70.20 17 380 4.2E-90 T 22-04-2016 TRD_RS06355 c0f3408fedadbb9bf377183f11795868 395 Pfam PF05167 Uncharacterised ACR (DUF711) 18 362 6.2E-85 T 22-04-2016 IPR007841 Uncharacterised protein family UPF0210 TRD_RS06355 c0f3408fedadbb9bf377183f11795868 395 PANTHER PTHR37560 30 377 3.6E-49 T 22-04-2016 TRD_RS06300 9036f1c7bbe90e31add59261c8953402 176 SUPERFAMILY SSF52949 4 172 6.06E-45 T 22-04-2016 TRD_RS06300 9036f1c7bbe90e31add59261c8953402 176 Pfam PF01661 Macro domain 22 136 3.7E-26 T 22-04-2016 IPR002589 Macro domain TRD_RS06300 9036f1c7bbe90e31add59261c8953402 176 SMART SM00506 5 137 4.9E-34 T 22-04-2016 IPR002589 Macro domain TRD_RS06300 9036f1c7bbe90e31add59261c8953402 176 Gene3D G3DSA:3.40.220.10 6 172 2.9E-41 T 22-04-2016 TRD_RS06300 9036f1c7bbe90e31add59261c8953402 176 PANTHER PTHR11106 9 172 6.3E-38 T 22-04-2016 TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 206 220 - T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 SUPERFAMILY SSF53383 30 399 7.29E-114 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 Gene3D G3DSA:3.40.640.10 10 261 2.3E-91 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 PIRSF PIRSF001434 2 402 1.4E-137 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 Gene3D G3DSA:3.90.1150.10 262 399 1.2E-46 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 PANTHER PTHR11808 2 402 3.8E-169 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 TRD_RS01815 91a0f3be0c3712d4f50b6bc5c8167f38 402 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 398 9.0E-126 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 TRD_RS04035 afb27abd745e75a0bbda1c6ecad850bb 300 SUPERFAMILY SSF161098 29 289 6.15E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04035 afb27abd745e75a0bbda1c6ecad850bb 300 PANTHER PTHR30193 18 298 4.5E-112 T 22-04-2016 TRD_RS04035 afb27abd745e75a0bbda1c6ecad850bb 300 PANTHER PTHR30193:SF8 18 298 4.5E-112 T 22-04-2016 TRD_RS04035 afb27abd745e75a0bbda1c6ecad850bb 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 287 9.5E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04035 afb27abd745e75a0bbda1c6ecad850bb 300 Gene3D G3DSA:1.10.3720.10 24 288 2.1E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.20.20.80 361 477 7.1E-111 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.20.20.80 21 121 7.1E-111 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.20.20.80 195 329 7.1E-111 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 PANTHER PTHR10357:SF164 1 415 8.8E-279 T 22-04-2016 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 PANTHER PTHR10357:SF164 454 580 8.8E-279 T 22-04-2016 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Pfam PF16657 Maltogenic Amylase, C-terminal domain 478 555 2.5E-27 T 22-04-2016 IPR032091 Maltogenic Amylase, C-terminal TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 581 1116 1.1E-149 T 22-04-2016 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF51011 478 559 1.05E-16 T 22-04-2016 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF51445 21 341 8.16E-132 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF51445 368 475 8.16E-132 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Pfam PF01636 Phosphotransferase enzyme family 873 1044 4.9E-9 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 SMART SM00642 31 430 1.6E-102 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.90.400.10 122 191 1.4E-23 T 22-04-2016 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 PANTHER PTHR10357 1 415 8.8E-279 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 PANTHER PTHR10357 454 580 8.8E-279 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:2.60.40.1180 478 558 2.1E-19 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 23 558 1.7E-280 T 22-04-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF56112 754 817 2.21E-19 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 SUPERFAMILY SSF56112 866 1120 2.21E-19 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Gene3D G3DSA:3.90.1200.10 876 993 6.9E-6 T 22-04-2016 TRD_RS09020 4bbd874c90c5368bf9864b9402caacfa 1123 Pfam PF00128 Alpha amylase, catalytic domain 46 399 9.8E-76 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 30 281 2.1E-67 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 2 292 26.961 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 PRINTS PR01755 Bacterial translocase SecF protein signature 29 44 8.6E-19 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 PRINTS PR01755 Bacterial translocase SecF protein signature 229 244 8.6E-19 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 PRINTS PR01755 Bacterial translocase SecF protein signature 197 215 8.6E-19 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 Pfam PF07549 SecD/SecF GG Motif 24 51 2.3E-6 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 Gene3D G3DSA:1.20.1640.10 116 288 5.8E-19 T 22-04-2016 TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 PANTHER PTHR30081 1 295 2.3E-68 T 22-04-2016 TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 Pfam PF02355 Protein export membrane protein 97 290 1.3E-57 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 PANTHER PTHR30081:SF8 1 295 2.3E-68 T 22-04-2016 TRD_RS02965 d8d19925a8686510876786e39c1025c9 307 SUPERFAMILY SSF82866 88 293 1.28E-32 T 22-04-2016 TRD_RS03205 9bb6fea1cbcc553d7e048fa2f2f76e08 81 Pfam PF09723 Zinc ribbon domain 1 39 6.2E-18 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain TRD_RS03205 9bb6fea1cbcc553d7e048fa2f2f76e08 81 PANTHER PTHR34404:SF2 2 78 3.5E-23 T 22-04-2016 TRD_RS03205 9bb6fea1cbcc553d7e048fa2f2f76e08 81 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 51 5.7E-22 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain TRD_RS03205 9bb6fea1cbcc553d7e048fa2f2f76e08 81 Gene3D G3DSA:2.20.28.30 5 34 1.6E-4 T 22-04-2016 IPR006591 RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 GO:0003677|GO:0003899|GO:0006351 TRD_RS03205 9bb6fea1cbcc553d7e048fa2f2f76e08 81 SMART SM00834 1 41 2.9E-17 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain TRD_RS03205 9bb6fea1cbcc553d7e048fa2f2f76e08 81 PANTHER PTHR34404 2 78 3.5E-23 T 22-04-2016 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 PIRSF PIRSF006661 2 272 3.2E-102 T 22-04-2016 IPR005232 Conserved hypothetical protein CHP00268 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 Pfam PF00733 Asparagine synthase 15 130 7.5E-6 T 22-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 PANTHER PTHR11807 1 267 4.9E-67 T 22-04-2016 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 SUPERFAMILY SSF52402 21 223 9.04E-37 T 22-04-2016 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 PANTHER PTHR11807:SF17 1 267 4.9E-67 T 22-04-2016 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 8 261 2.9E-77 T 22-04-2016 IPR005232 Conserved hypothetical protein CHP00268 TRD_RS02840 9497a5138713da2c6685cae39dff99b5 279 Gene3D G3DSA:3.40.50.620 18 173 2.4E-31 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS01885 03cdfd26c23e28d485cc13c02d6f3c29 143 PANTHER PTHR36302:SF1 4 142 2.0E-33 T 22-04-2016 TRD_RS01885 03cdfd26c23e28d485cc13c02d6f3c29 143 PANTHER PTHR36302 4 142 2.0E-33 T 22-04-2016 TRD_RS01885 03cdfd26c23e28d485cc13c02d6f3c29 143 Pfam PF04314 Protein of unknown function (DUF461) 28 136 4.5E-44 T 22-04-2016 IPR007410 DR1885-like metal-binding protein TRD_RS01885 03cdfd26c23e28d485cc13c02d6f3c29 143 SUPERFAMILY SSF110087 16 142 2.88E-46 T 22-04-2016 IPR007410 DR1885-like metal-binding protein TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 PANTHER PTHR11911 109 417 5.1E-42 T 22-04-2016 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 SUPERFAMILY SSF158791 10 131 8.11E-21 T 22-04-2016 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Pfam PF03448 MgtE intracellular N domain 35 132 3.0E-19 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Pfam PF00571 CBS domain 198 252 8.5E-13 T 22-04-2016 IPR000644 CBS domain TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Pfam PF00571 CBS domain 138 190 1.2E-4 T 22-04-2016 IPR000644 CBS domain TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 SMART SM00116 141 194 2.9 T 22-04-2016 IPR000644 CBS domain TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 SMART SM00116 205 253 3.8E-10 T 22-04-2016 IPR000644 CBS domain TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Gene3D G3DSA:3.10.580.10 127 260 8.7E-27 T 22-04-2016 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 PANTHER PTHR11911:SF23 109 417 5.1E-42 T 22-04-2016 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 SUPERFAMILY SSF54631 133 270 7.83E-34 T 22-04-2016 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Gene3D G3DSA:1.25.60.10 7 126 5.9E-23 T 22-04-2016 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Gene3D G3DSA:1.10.357.20 278 449 1.3E-55 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 SMART SM00924 31 134 1.1E-22 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 Pfam PF01769 Divalent cation transporter 320 442 3.5E-27 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 TIGRFAM TIGR00400 mgtE: magnesium transporter 11 449 5.6E-110 T 22-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 TRD_RS02610 e2a7542561ab806f025d0aef02117f36 452 SUPERFAMILY SSF161093 278 448 6.67E-48 T 22-04-2016 TRD_RS02415 b63e4e73458ac6fb4fdb60d214ca20d2 304 Gene3D G3DSA:1.10.3720.10 25 296 2.7E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02415 b63e4e73458ac6fb4fdb60d214ca20d2 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 295 2.3E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02415 b63e4e73458ac6fb4fdb60d214ca20d2 304 PANTHER PTHR30193:SF10 5 304 2.8E-127 T 22-04-2016 TRD_RS02415 b63e4e73458ac6fb4fdb60d214ca20d2 304 SUPERFAMILY SSF161098 29 298 1.03E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS02415 b63e4e73458ac6fb4fdb60d214ca20d2 304 PANTHER PTHR30193 5 304 2.8E-127 T 22-04-2016 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 166 188 3.1E-41 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 44 68 3.1E-41 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 213 233 3.1E-41 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 136 154 3.1E-41 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 2 21 3.1E-41 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PRINTS PR00783 Major intrinsic protein family signature 81 100 3.1E-41 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 SUPERFAMILY SSF81338 2 232 3.66E-59 T 22-04-2016 IPR023271 Aquaporin-like TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 Gene3D G3DSA:1.20.1080.10 2 232 1.8E-66 T 22-04-2016 IPR023271 Aquaporin-like TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PANTHER PTHR19139:SF147 1 233 2.1E-60 T 22-04-2016 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 PANTHER PTHR19139 1 233 2.1E-60 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 Pfam PF00230 Major intrinsic protein 2 226 1.3E-40 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 TRD_RS01875 c967f1779d856bc2d540389790fe35fe 233 ProSitePatterns PS00221 MIP family signature. 62 70 - T 22-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 PANTHER PTHR11904 2 281 2.1E-78 T 22-04-2016 IPR001369 PNP/MTAP phosphorylase TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 PANTHER PTHR11904:SF9 2 281 2.1E-78 T 22-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 SUPERFAMILY SSF53167 7 279 2.92E-68 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 Pfam PF01048 Phosphorylase superfamily 29 270 7.0E-40 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 Gene3D G3DSA:3.40.50.1580 9 277 8.5E-77 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 29 269 1.3E-66 T 22-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 TRD_RS00945 5257a7602e1fd3cb0494cfdb63bdb1f1 289 PIRSF PIRSF000477 2 276 7.1E-70 T 22-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 TRD_RS02445 42438075062a720ad9827deba266284d 318 PIRSF PIRSF036979 14 313 4.3E-100 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02445 42438075062a720ad9827deba266284d 318 PANTHER PTHR11358 1 310 4.7E-105 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02445 42438075062a720ad9827deba266284d 318 TIGRFAM TIGR01230 agmatinase: agmatinase 34 307 1.3E-64 T 22-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 TRD_RS02445 42438075062a720ad9827deba266284d 318 PRINTS PR00116 Arginase signature 234 263 2.9E-15 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02445 42438075062a720ad9827deba266284d 318 PRINTS PR00116 Arginase signature 121 136 2.9E-15 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS02445 42438075062a720ad9827deba266284d 318 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 22-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 TRD_RS02445 42438075062a720ad9827deba266284d 318 Gene3D G3DSA:3.40.800.10 7 311 3.5E-116 T 22-04-2016 IPR023696 Ureohydrolase domain TRD_RS02445 42438075062a720ad9827deba266284d 318 SUPERFAMILY SSF52768 14 312 1.28E-101 T 22-04-2016 TRD_RS02445 42438075062a720ad9827deba266284d 318 Pfam PF00491 Arginase family 35 306 8.2E-88 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 Gene3D G3DSA:3.50.50.60 10 121 4.6E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 338 1.4E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 SUPERFAMILY SSF51905 4 347 2.67E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PANTHER PTHR22912:SF140 11 346 1.9E-31 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 Gene3D G3DSA:3.50.50.60 122 346 1.6E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PANTHER PTHR22912 11 346 1.9E-31 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 4.4E-6 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 4.4E-6 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 4.4E-6 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 9.0E-14 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 9.0E-14 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 9.0E-14 T 22-04-2016 TRD_RS08930 e290f0132fd10ad02d89d00d5e890cac 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 9.0E-14 T 22-04-2016 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 161 8.1E-56 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 162 33.624 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 PANTHER PTHR21342:SF1 1 167 1.7E-71 T 22-04-2016 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 SUPERFAMILY SSF52374 3 160 4.02E-43 T 22-04-2016 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.3E-31 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.3E-31 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 116 138 2.3E-31 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 89 105 2.3E-31 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 Pfam PF01467 Cytidylyltransferase-like 6 137 6.7E-20 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 PANTHER PTHR21342 1 167 1.7E-71 T 22-04-2016 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 66 1.8E-16 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 TRD_RS00465 f25a560fd3a18137f0a5607f24a5bc20 167 Gene3D G3DSA:3.40.50.620 4 161 2.6E-52 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS01665 a8f7822f99c5c02e1211c783f7dbc8d6 216 Gene3D G3DSA:3.90.550.10 3 202 1.2E-51 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS01665 a8f7822f99c5c02e1211c783f7dbc8d6 216 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 197 24.709 T 22-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 TRD_RS01665 a8f7822f99c5c02e1211c783f7dbc8d6 216 SUPERFAMILY SSF53448 2 194 4.51E-32 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS01665 a8f7822f99c5c02e1211c783f7dbc8d6 216 PANTHER PTHR19136 4 200 5.7E-37 T 22-04-2016 TRD_RS01665 a8f7822f99c5c02e1211c783f7dbc8d6 216 Pfam PF12804 MobA-like NTP transferase domain 6 153 1.0E-37 T 22-04-2016 IPR025877 MobA-like NTP transferase TRD_RS01665 a8f7822f99c5c02e1211c783f7dbc8d6 216 PANTHER PTHR19136:SF81 4 200 5.7E-37 T 22-04-2016 TRD_RS01970 c77136bcb150c95c9987aa99be337c7c 209 PANTHER PTHR17490 12 204 1.2E-65 T 22-04-2016 TRD_RS01970 c77136bcb150c95c9987aa99be337c7c 209 Gene3D G3DSA:3.90.870.10 8 205 6.9E-68 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain TRD_RS01970 c77136bcb150c95c9987aa99be337c7c 209 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 11 204 1.6E-54 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 TRD_RS01970 c77136bcb150c95c9987aa99be337c7c 209 SUPERFAMILY SSF55821 11 204 2.96E-58 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain TRD_RS01970 c77136bcb150c95c9987aa99be337c7c 209 Pfam PF01300 Telomere recombination 18 193 1.6E-49 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 PANTHER PTHR13794 148 398 1.5E-94 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 PANTHER PTHR13794 10 122 1.5E-94 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 108 3.0E-15 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 Gene3D G3DSA:3.20.20.120 115 375 8.4E-73 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 SUPERFAMILY SSF51604 155 390 9.96E-70 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 SUPERFAMILY SSF51604 96 120 9.96E-70 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 Gene3D G3DSA:3.30.390.10 13 114 1.0E-33 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 SUPERFAMILY SSF54826 1 112 2.86E-25 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 PANTHER PTHR13794:SF4 148 398 1.5E-94 T 22-04-2016 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 PANTHER PTHR13794:SF4 10 122 1.5E-94 T 22-04-2016 TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 Pfam PF13378 Enolase C-terminal domain-like 163 386 1.1E-51 T 22-04-2016 IPR029065 Enolase C-terminal domain-like TRD_RS09145 c8be20c155551bf3f947cf626b5d11eb 399 SMART SM00922 159 266 1.8E-16 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 PANTHER PTHR24023:SF593 32 45 7.2E-38 T 22-04-2016 TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 PANTHER PTHR24023:SF593 61 389 7.2E-38 T 22-04-2016 TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 SUPERFAMILY SSF89796 11 402 9.29E-141 T 22-04-2016 IPR023606 CoA-transferase family III domain TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 Gene3D G3DSA:3.30.1540.10 231 311 5.5E-33 T 22-04-2016 TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 Pfam PF02515 CoA-transferase family III 13 379 8.2E-132 T 22-04-2016 IPR003673 CoA-transferase family III GO:0003824 TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 Gene3D G3DSA:3.40.50.10540 312 402 3.8E-119 T 22-04-2016 IPR023606 CoA-transferase family III domain TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 Gene3D G3DSA:3.40.50.10540 10 223 3.8E-119 T 22-04-2016 IPR023606 CoA-transferase family III domain TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 PANTHER PTHR24023 32 45 7.2E-38 T 22-04-2016 TRD_RS08245 bd60c0c244ab1095869bd671865965a2 412 PANTHER PTHR24023 61 389 7.2E-38 T 22-04-2016 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 167 186 8.34E-18 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 43 59 8.34E-18 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 119 131 8.34E-18 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 ProSitePatterns PS00501 Signal peptidases I serine active site. 52 59 - T 22-04-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 SUPERFAMILY SSF51306 47 213 4.71E-54 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 ProSitePatterns PS00760 Signal peptidases I lysine active site. 121 133 - T 22-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PANTHER PTHR12383 98 213 6.1E-51 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PANTHER PTHR12383 16 69 6.1E-51 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 29 207 2.0E-46 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 Pfam PF00717 Peptidase S24-like 49 143 8.6E-20 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 ProSitePatterns PS00761 Signal peptidases I signature 3. 172 185 - T 22-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 Gene3D G3DSA:2.10.109.10 47 129 8.2E-42 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 Gene3D G3DSA:2.10.109.10 167 212 8.2E-42 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PANTHER PTHR12383:SF14 98 213 6.1E-51 T 22-04-2016 TRD_RS03605 2875663cc1bd17f750b9d7d8580f28c3 221 PANTHER PTHR12383:SF14 16 69 6.1E-51 T 22-04-2016 TRD_RS13700 44cc66ecea50722569c2d128a24f2bc0 216 Pfam PF01569 PAP2 superfamily 90 202 1.1E-18 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase TRD_RS13700 44cc66ecea50722569c2d128a24f2bc0 216 Gene3D G3DSA:1.20.144.10 48 200 7.2E-27 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase TRD_RS13700 44cc66ecea50722569c2d128a24f2bc0 216 SMART SM00014 89 202 7.0E-10 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase TRD_RS13700 44cc66ecea50722569c2d128a24f2bc0 216 PANTHER PTHR14969 36 204 5.1E-19 T 22-04-2016 TRD_RS13700 44cc66ecea50722569c2d128a24f2bc0 216 SUPERFAMILY SSF48317 16 203 9.29E-28 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase TRD_RS08130 30f3c1882be945a803ea06bac3a4aaa3 124 Pfam PF01594 Domain of unknown function DUF20 4 82 2.4E-11 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like TRD_RS02505 56662d7c8a5160c265d834c8c5847668 214 Gene3D G3DSA:1.20.910.10 5 213 1.3E-57 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 TRD_RS02505 56662d7c8a5160c265d834c8c5847668 214 PANTHER PTHR20858:SF18 1 176 8.9E-40 T 22-04-2016 TRD_RS02505 56662d7c8a5160c265d834c8c5847668 214 Pfam PF03070 TENA/THI-4/PQQC family 11 208 7.7E-32 T 22-04-2016 IPR004305 Thiaminase-2/PQQC TRD_RS02505 56662d7c8a5160c265d834c8c5847668 214 SUPERFAMILY SSF48613 4 207 3.71E-53 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 TRD_RS02505 56662d7c8a5160c265d834c8c5847668 214 PIRSF PIRSF003170 2 211 2.4E-35 T 22-04-2016 IPR026285 TenA_E protein TRD_RS02505 56662d7c8a5160c265d834c8c5847668 214 PANTHER PTHR20858 1 176 8.9E-40 T 22-04-2016 TRD_RS13485 4aa4402500347d5341fbd39278cad4e9 248 Pfam PF00293 NUDIX domain 53 171 5.9E-8 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 TRD_RS13485 4aa4402500347d5341fbd39278cad4e9 248 Gene3D G3DSA:3.90.79.10 8 182 7.8E-36 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS13485 4aa4402500347d5341fbd39278cad4e9 248 SUPERFAMILY SSF55811 13 178 1.1E-20 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS01155 c5df332e850472f318023ca8b39f73ae 158 SUPERFAMILY SSF88697 5 146 1.41E-18 T 22-04-2016 IPR015947 PUA-like domain TRD_RS01155 c5df332e850472f318023ca8b39f73ae 158 Gene3D G3DSA:3.10.590.10 5 147 1.5E-32 T 22-04-2016 IPR002740 EVE domain TRD_RS01155 c5df332e850472f318023ca8b39f73ae 158 Pfam PF01878 EVE domain 5 145 5.5E-15 T 22-04-2016 IPR002740 EVE domain TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 SUPERFAMILY SSF52980 6 115 7.72E-23 T 22-04-2016 IPR011335 Restriction endonuclease type II-like TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 6 109 1.2E-22 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 PANTHER PTHR34039 1 123 2.2E-33 T 22-04-2016 TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 PANTHER PTHR34039:SF1 1 123 2.2E-33 T 22-04-2016 TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 Gene3D G3DSA:3.40.1350.10 10 113 3.6E-34 T 22-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 Pfam PF02021 Uncharacterised protein family UPF0102 10 101 4.3E-26 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 TRD_RS04825 58e4195da7c3ec6294a5cd39964172f4 125 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 114 20.71 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 TRD_RS03875 1b20cb5ec9f5f1f4d1fab0830c0fc7ac 528 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 373 502 4.1E-11 T 22-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain TRD_RS03875 1b20cb5ec9f5f1f4d1fab0830c0fc7ac 528 Pfam PF01943 Polysaccharide biosynthesis protein 51 322 6.5E-28 T 22-04-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 Gene3D G3DSA:1.10.10.10 264 355 3.4E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01520 35a526996de511ee3babf21841094f5e 357 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 280 295 7.0E-10 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 312 327 7.0E-10 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 327 342 7.0E-10 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 PANTHER PTHR33154 280 357 7.7E-16 T 22-04-2016 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 PANTHER PTHR33154:SF1 280 357 7.7E-16 T 22-04-2016 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 SMART SM00418 278 356 5.4E-22 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS01520 35a526996de511ee3babf21841094f5e 357 SUPERFAMILY SSF46785 273 356 1.49E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01520 35a526996de511ee3babf21841094f5e 357 Pfam PF01022 Bacterial regulatory protein, arsR family 285 330 4.9E-15 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 Pfam PF00005 ABC transporter 23 180 2.5E-20 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 PANTHER PTHR24220:SF85 9 255 1.4E-129 T 22-04-2016 TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 Gene3D G3DSA:3.40.50.300 5 239 2.8E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 PANTHER PTHR24220 9 255 1.4E-129 T 22-04-2016 TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 10 252 2.1E-106 T 22-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 SUPERFAMILY SSF52540 6 239 1.49E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS01765 c577a8bc256c3b81d32ff003855d0e0c 261 SMART SM00382 32 238 0.0011 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 SUPERFAMILY SSF75304 5 484 9.81E-175 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 477 1.6E-188 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 Gene3D G3DSA:3.90.1300.10 3 484 1.1E-193 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 PANTHER PTHR11895:SF75 14 483 5.0E-245 T 22-04-2016 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 Pfam PF01425 Amidase 26 466 1.3E-164 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 PANTHER PTHR11895 14 483 5.0E-245 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 477 95.825 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS08220 91d57e38f3fad721a4e0834d7b420793 489 ProSitePatterns PS00571 Amidases signature. 153 184 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 17 265 34.395 T 22-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 Pfam PF00290 Tryptophan synthase alpha chain 11 252 2.3E-86 T 22-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 PANTHER PTHR10314:SF4 1 54 1.0E-24 T 22-04-2016 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 PANTHER PTHR10314:SF4 77 133 1.0E-24 T 22-04-2016 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 SUPERFAMILY SSF51366 5 255 2.35E-85 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 PANTHER PTHR10314 1 54 1.0E-24 T 22-04-2016 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 PANTHER PTHR10314 77 133 1.0E-24 T 22-04-2016 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 Gene3D G3DSA:3.20.20.70 5 267 1.2E-96 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 51 64 - T 22-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS00520 14c07109c14ba46c902f4bd6c7d4f034 276 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 11 246 4.1E-79 T 22-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 TRD_RS08250 c7095ec854085d8a169e0cdc8ca6198d 261 Gene3D G3DSA:3.90.226.10 2 256 1.5E-71 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS08250 c7095ec854085d8a169e0cdc8ca6198d 261 PANTHER PTHR11941:SF54 4 256 1.0E-70 T 22-04-2016 TRD_RS08250 c7095ec854085d8a169e0cdc8ca6198d 261 SUPERFAMILY SSF52096 3 257 4.04E-75 T 22-04-2016 IPR029045 ClpP/crotonase-like domain TRD_RS08250 c7095ec854085d8a169e0cdc8ca6198d 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 258 3.1E-52 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 TRD_RS08250 c7095ec854085d8a169e0cdc8ca6198d 261 PANTHER PTHR11941 4 256 1.0E-70 T 22-04-2016 TRD_RS01895 ce499d25ab28df7e003757f907e2aeb3 215 SUPERFAMILY SSF52833 43 191 9.34E-17 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS01895 ce499d25ab28df7e003757f907e2aeb3 215 Gene3D G3DSA:3.40.30.10 38 190 1.3E-14 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS07175 664ae2f6548e48e276db04bc8bd31264 263 SUPERFAMILY SSF53448 4 225 1.13E-46 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS07175 664ae2f6548e48e276db04bc8bd31264 263 PANTHER PTHR10859 5 249 2.2E-62 T 22-04-2016 TRD_RS07175 664ae2f6548e48e276db04bc8bd31264 263 Gene3D G3DSA:3.90.550.10 5 246 5.9E-32 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases TRD_RS07175 664ae2f6548e48e276db04bc8bd31264 263 Pfam PF00535 Glycosyl transferase family 2 6 173 4.8E-29 T 22-04-2016 IPR001173 Glycosyltransferase 2-like TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PANTHER PTHR23023 331 394 3.2E-61 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PANTHER PTHR23023 4 61 3.2E-61 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PANTHER PTHR23023 78 314 3.2E-61 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 SUPERFAMILY SSF51905 77 391 2.41E-30 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 SUPERFAMILY SSF51905 8 49 2.41E-30 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 Gene3D G3DSA:3.50.50.60 245 286 5.1E-8 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.8E-7 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 151 160 2.8E-7 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 311 2.8E-7 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 312 6.0E-11 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.0E-11 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 6.0E-11 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 198 216 6.0E-11 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PANTHER PTHR23023:SF100 331 394 3.2E-61 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PANTHER PTHR23023:SF100 4 61 3.2E-61 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 PANTHER PTHR23023:SF100 78 314 3.2E-61 T 22-04-2016 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 Gene3D G3DSA:3.50.50.60 8 217 1.5E-22 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00360 4a85a3a5c1e6b4fc7e8a7bdc90ad64c6 497 Pfam PF01266 FAD dependent oxidoreductase 9 315 1.1E-8 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 TRD_RS12515 e5eeb79eb1049d2c04c4852e9f38abb8 160 PANTHER PTHR32294:SF0 1 159 7.0E-71 T 22-04-2016 TRD_RS12515 e5eeb79eb1049d2c04c4852e9f38abb8 160 Pfam PF14579 Helix-hairpin-helix motif 113 160 1.7E-12 T 22-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 TRD_RS12515 e5eeb79eb1049d2c04c4852e9f38abb8 160 PANTHER PTHR32294 1 159 7.0E-71 T 22-04-2016 TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.3E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.3E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.3E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.1E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.1E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.1E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.1E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.1E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PANTHER PTHR24321:SF6 1 249 1.6E-76 T 22-04-2016 TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 Gene3D G3DSA:3.40.50.720 2 249 7.8E-92 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 PANTHER PTHR24321 1 249 1.6E-76 T 22-04-2016 TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 247 2.4E-71 T 22-04-2016 TRD_RS01180 1194d0a6ec791e2b3bf7d232f83ec42e 250 SUPERFAMILY SSF51735 1 249 2.6E-85 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01835 9babcd75f58d1c0c6c01896a1ab85230 275 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 259 7.6E-108 T 22-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 TRD_RS01835 9babcd75f58d1c0c6c01896a1ab85230 275 Gene3D G3DSA:3.40.1190.20 4 260 4.9E-110 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS01835 9babcd75f58d1c0c6c01896a1ab85230 275 PANTHER PTHR20858 1 275 3.9E-134 T 22-04-2016 TRD_RS01835 9babcd75f58d1c0c6c01896a1ab85230 275 Pfam PF08543 Phosphomethylpyrimidine kinase 13 257 3.8E-100 T 22-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 TRD_RS01835 9babcd75f58d1c0c6c01896a1ab85230 275 PANTHER PTHR20858:SF17 1 275 3.9E-134 T 22-04-2016 TRD_RS01835 9babcd75f58d1c0c6c01896a1ab85230 275 SUPERFAMILY SSF53613 1 263 2.34E-87 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 269 33.089 T 22-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 PANTHER PTHR19278:SF1 2 226 1.2E-67 T 22-04-2016 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 255 7.4E-73 T 22-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 Gene3D G3DSA:3.20.20.70 5 263 4.5E-68 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 SMART SM00934 17 256 6.4E-47 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 SUPERFAMILY SSF51366 3 264 1.06E-79 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 250 1.5E-27 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS00045 16b8e175f5cff5304e5a5bfd8c4f4896 281 PANTHER PTHR19278 2 226 1.2E-67 T 22-04-2016 TRD_RS03675 1b57bc9d419f673326f55a473557076c 238 Gene3D G3DSA:3.40.50.7700 82 214 2.7E-23 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS03675 1b57bc9d419f673326f55a473557076c 238 SMART SM01001 81 216 2.1E-27 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS03675 1b57bc9d419f673326f55a473557076c 238 SUPERFAMILY SSF52255 81 219 1.03E-26 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS03675 1b57bc9d419f673326f55a473557076c 238 PANTHER PTHR23046 2 213 1.2E-84 T 22-04-2016 TRD_RS03675 1b57bc9d419f673326f55a473557076c 238 Pfam PF00731 AIR carboxylase 82 214 9.6E-17 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 TRD_RS03675 1b57bc9d419f673326f55a473557076c 238 PANTHER PTHR23046:SF3 2 213 1.2E-84 T 22-04-2016 TRD_RS00065 3e651dd8041a6449e0e72f2e63b4b592 217 Gene3D G3DSA:3.40.1280.10 11 193 8.0E-44 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal TRD_RS00065 3e651dd8041a6449e0e72f2e63b4b592 217 PANTHER PTHR12029:SF45 5 199 3.1E-57 T 22-04-2016 TRD_RS00065 3e651dd8041a6449e0e72f2e63b4b592 217 SUPERFAMILY SSF75217 7 189 2.94E-45 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases TRD_RS00065 3e651dd8041a6449e0e72f2e63b4b592 217 PANTHER PTHR12029 5 199 3.1E-57 T 22-04-2016 TRD_RS00065 3e651dd8041a6449e0e72f2e63b4b592 217 Pfam PF00588 SpoU rRNA Methylase family 24 166 5.2E-33 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 TRD_RS02455 c879236c34b215da02b9b8715eff96e1 212 Pfam PF09347 Domain of unknown function (DUF1989) 23 185 1.2E-56 T 22-04-2016 IPR018959 Domain of unknown function DUF1989 TRD_RS02455 c879236c34b215da02b9b8715eff96e1 212 PANTHER PTHR31527:SF0 23 212 5.9E-52 T 22-04-2016 TRD_RS02455 c879236c34b215da02b9b8715eff96e1 212 PANTHER PTHR31527 23 212 5.9E-52 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 Gene3D G3DSA:1.20.1090.10 195 425 8.6E-61 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 PANTHER PTHR11496:SF62 231 300 4.1E-161 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 PANTHER PTHR11496:SF62 316 428 4.1E-161 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 PANTHER PTHR11496:SF62 18 214 4.1E-161 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 Gene3D G3DSA:3.40.50.1970 18 194 1.2E-51 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 Pfam PF00465 Iron-containing alcohol dehydrogenase 18 415 3.6E-106 T 22-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 PANTHER PTHR11496 231 300 4.1E-161 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 PANTHER PTHR11496 316 428 4.1E-161 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 PANTHER PTHR11496 18 214 4.1E-161 T 22-04-2016 TRD_RS00940 e4bc6d4c47274a178cee38d41d2616cc 428 SUPERFAMILY SSF56796 18 424 6.28E-103 T 22-04-2016 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PANTHER PTHR10422:SF17 41 546 6.2E-140 T 22-04-2016 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 67 90 1.6E-10 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 353 371 1.6E-10 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 432 453 1.6E-10 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 158 176 1.6E-10 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 381 400 1.6E-10 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 34 479 4.3E-81 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 Gene3D G3DSA:1.20.210.10 34 504 1.4E-73 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 SUPERFAMILY SSF81442 34 550 1.96E-97 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS02580 57036a141e0940e757c5c0ac061ea660 562 PANTHER PTHR10422 41 546 6.2E-140 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS04340 fdcaa2f9ad22884b1b68c54cc76612b8 137 Gene3D G3DSA:3.30.160.100 3 98 4.9E-7 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 TRD_RS04340 fdcaa2f9ad22884b1b68c54cc76612b8 137 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 13 98 2.0E-5 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 TRD_RS04340 fdcaa2f9ad22884b1b68c54cc76612b8 137 SUPERFAMILY SSF69754 3 99 3.92E-8 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 TRD_RS06650 0f0780e258f9f9af6f7e6bfd119681b7 103 PANTHER PTHR33677:SF3 11 100 2.1E-26 T 22-04-2016 TRD_RS06650 0f0780e258f9f9af6f7e6bfd119681b7 103 Pfam PF02583 Metal-sensitive transcriptional repressor 20 96 4.8E-28 T 22-04-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 TRD_RS06650 0f0780e258f9f9af6f7e6bfd119681b7 103 PANTHER PTHR33677 11 100 2.1E-26 T 22-04-2016 TRD_RS05650 a4c80a95940ea1b9ae4ed335fc23ffdd 106 Pfam PF02625 XdhC and CoxI family 11 78 3.0E-27 T 22-04-2016 IPR003777 XdhC- CoxI TRD_RS05650 a4c80a95940ea1b9ae4ed335fc23ffdd 106 PANTHER PTHR30388 1 102 2.1E-42 T 22-04-2016 TRD_RS05650 a4c80a95940ea1b9ae4ed335fc23ffdd 106 PANTHER PTHR30388:SF4 1 102 2.1E-42 T 22-04-2016 TRD_RS00795 e79f23b4f5674904d736b539a3386d3b 335 PANTHER PTHR31223:SF5 142 299 2.8E-29 T 22-04-2016 TRD_RS00795 e79f23b4f5674904d736b539a3386d3b 335 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 55 293 5.0E-54 T 22-04-2016 IPR010787 Protein of unknown function DUF1385 TRD_RS00795 e79f23b4f5674904d736b539a3386d3b 335 PANTHER PTHR31223 142 299 2.8E-29 T 22-04-2016 TRD_RS00795 e79f23b4f5674904d736b539a3386d3b 335 Pfam PF07136 Protein of unknown function (DUF1385) 55 296 3.8E-77 T 22-04-2016 IPR010787 Protein of unknown function DUF1385 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 122 208 19.844 T 22-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 PANTHER PTHR21256 5 214 2.9E-101 T 22-04-2016 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 11 213 35.576 T 22-04-2016 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19|UniPathway: UPA00031|UniPathway: UPA00031 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 SUPERFAMILY SSF141734 10 113 1.96E-44 T 22-04-2016 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 125 208 6.9E-29 T 22-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 SUPERFAMILY SSF101386 123 208 4.11E-24 T 22-04-2016 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 127 211 1.2E-16 T 22-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 Gene3D G3DSA:1.10.287.1080 154 199 5.8E-4 T 22-04-2016 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 58 107 2.0E-16 T 22-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 9 112 28.687 T 22-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 TRD_RS00535 cbef63f0f6a4404ebd846fa0a24eb988 218 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 35 107 1.5E-33 T 22-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 TRD_RS01720 5d5b8203c09ce62856bb04c3e77829cd 530 Gene3D G3DSA:3.40.50.2000 29 298 3.4E-60 T 22-04-2016 TRD_RS01720 5d5b8203c09ce62856bb04c3e77829cd 530 PANTHER PTHR10788:SF6 27 522 9.9E-101 T 22-04-2016 TRD_RS01720 5d5b8203c09ce62856bb04c3e77829cd 530 SUPERFAMILY SSF53756 30 517 1.15E-102 T 22-04-2016 TRD_RS01720 5d5b8203c09ce62856bb04c3e77829cd 530 PANTHER PTHR10788 27 522 9.9E-101 T 22-04-2016 TRD_RS01720 5d5b8203c09ce62856bb04c3e77829cd 530 Pfam PF00982 Glycosyltransferase family 20 31 515 2.3E-106 T 22-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 TRD_RS01720 5d5b8203c09ce62856bb04c3e77829cd 530 Gene3D G3DSA:3.40.50.2000 299 499 8.1E-49 T 22-04-2016 TRD_RS05470 49d29c7be1c40514bca52bc108ef794b 465 PANTHER PTHR23300:SF1 1 463 1.1E-239 T 22-04-2016 TRD_RS05470 49d29c7be1c40514bca52bc108ef794b 465 SUPERFAMILY SSF75011 56 403 4.05E-25 T 22-04-2016 TRD_RS05470 49d29c7be1c40514bca52bc108ef794b 465 Pfam PF05694 56kDa selenium binding protein (SBP56) 5 463 1.4E-200 T 22-04-2016 IPR008826 Selenium-binding protein GO:0008430 TRD_RS05470 49d29c7be1c40514bca52bc108ef794b 465 PANTHER PTHR23300 1 463 1.1E-239 T 22-04-2016 IPR008826 Selenium-binding protein GO:0008430 TRD_RS05470 49d29c7be1c40514bca52bc108ef794b 465 Gene3D G3DSA:2.130.10.10 325 403 2.9E-12 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS05470 49d29c7be1c40514bca52bc108ef794b 465 Gene3D G3DSA:2.130.10.10 94 251 2.9E-12 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 PANTHER PTHR32114 143 850 3.9E-35 T 22-04-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 PANTHER PTHR32114:SF2 143 850 3.9E-35 T 22-04-2016 TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 Gene3D G3DSA:3.40.50.300 734 835 7.2E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 SUPERFAMILY SSF52540 1 257 3.58E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 Gene3D G3DSA:3.40.50.300 1 148 2.7E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 Gene3D G3DSA:1.10.287.510 377 480 1.2E-12 T 22-04-2016 TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 SUPERFAMILY SSF52540 617 845 4.46E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 Pfam PF13558 Putative exonuclease SbcCD, C subunit 752 809 3.2E-6 T 22-04-2016 TRD_RS05920 842924240b327c3a8a142048b66eaee2 850 Pfam PF04423 Rad50 zinc hook motif 403 437 2.4E-5 T 22-04-2016 IPR013134 RAD50, zinc hook TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 PANTHER PTHR11785 351 478 9.7E-21 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 PANTHER PTHR11785 499 545 9.7E-21 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 PANTHER PTHR11785 15 131 9.7E-21 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 PANTHER PTHR11785 236 330 9.7E-21 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 PANTHER PTHR11785 150 216 9.7E-21 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 Pfam PF13520 Amino acid permease 36 483 2.1E-19 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS06185 8670d3b19ddcf182499c72de6aeda12b 545 PIRSF PIRSF006060 6 540 1.2E-32 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS08595 26775ed4556992039a2e872f69224f9c 301 PANTHER PTHR30465 34 300 6.3E-85 T 22-04-2016 TRD_RS08595 26775ed4556992039a2e872f69224f9c 301 SUPERFAMILY SSF161098 92 281 5.49E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08595 26775ed4556992039a2e872f69224f9c 301 Gene3D G3DSA:1.10.3720.10 91 295 3.5E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08595 26775ed4556992039a2e872f69224f9c 301 PANTHER PTHR30465:SF2 34 300 6.3E-85 T 22-04-2016 TRD_RS08595 26775ed4556992039a2e872f69224f9c 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 1.7E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS12605 ccd1b513be4d2ac9b2ccd3a603c0a10c 115 Gene3D G3DSA:3.40.640.10 6 110 4.6E-11 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS12605 ccd1b513be4d2ac9b2ccd3a603c0a10c 115 Pfam PF02347 Glycine cleavage system P-protein 8 113 4.4E-25 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS12605 ccd1b513be4d2ac9b2ccd3a603c0a10c 115 SUPERFAMILY SSF53383 4 114 1.97E-26 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS12605 ccd1b513be4d2ac9b2ccd3a603c0a10c 115 PANTHER PTHR11773:SF2 1 115 4.9E-41 T 22-04-2016 TRD_RS12605 ccd1b513be4d2ac9b2ccd3a603c0a10c 115 PANTHER PTHR11773 1 115 4.9E-41 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS13450 af3d40534b85ea96306ca19bad085f57 119 Pfam PF12831 FAD dependent oxidoreductase 24 107 4.6E-14 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS05245 2bfbdf558eb65610fdb81f0b4f052c2b 252 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 14 229 3.4E-32 T 22-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 TRD_RS05245 2bfbdf558eb65610fdb81f0b4f052c2b 252 SUPERFAMILY SSF51621 2 238 2.17E-64 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS05245 2bfbdf558eb65610fdb81f0b4f052c2b 252 PANTHER PTHR30502 1 252 6.3E-71 T 22-04-2016 TRD_RS05245 2bfbdf558eb65610fdb81f0b4f052c2b 252 Gene3D G3DSA:3.20.20.60 3 240 4.6E-64 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 PANTHER PTHR23083 128 233 2.7E-14 T 22-04-2016 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 PANTHER PTHR23083 484 511 2.7E-14 T 22-04-2016 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 PANTHER PTHR23083 10 107 2.7E-14 T 22-04-2016 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 SUPERFAMILY SSF48452 129 227 3.45E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 Gene3D G3DSA:1.25.40.10 9 229 1.5E-28 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 Gene3D G3DSA:1.25.40.10 435 508 1.5E-28 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 SUPERFAMILY SSF48452 11 116 9.16E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS08280 bc6980874a663b786d205d0428ab9104 511 Pfam PF14559 Tetratricopeptide repeat 52 102 3.9E-7 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 PANTHER PTHR11615 67 733 1.6E-37 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Gene3D G3DSA:3.40.50.740 364 530 7.2E-30 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Gene3D G3DSA:3.40.50.740 119 178 7.2E-30 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Pfam PF01568 Molydopterin dinucleotide binding domain 623 705 2.7E-13 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Gene3D G3DSA:3.40.228.10 186 363 4.1E-26 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 SUPERFAMILY SSF53706 53 535 8.11E-75 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Gene3D G3DSA:2.40.40.20 576 720 1.8E-24 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Pfam PF00384 Molybdopterin oxidoreductase 117 374 5.4E-13 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Pfam PF00384 Molybdopterin oxidoreductase 402 496 1.3E-6 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 Gene3D G3DSA:2.20.25.90 67 110 4.8E-6 T 22-04-2016 TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 SUPERFAMILY SSF50692 585 718 1.06E-22 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain TRD_RS02160 72c77bba6041c2e56c944c716b0232a4 747 PANTHER PTHR11615:SF139 67 733 1.6E-37 T 22-04-2016 TRD_RS05785 e6b4250056beffbf5474f882ba2ffac2 199 Pfam PF02698 DUF218 domain 43 168 2.0E-26 T 22-04-2016 IPR003848 Domain of unknown function DUF218 TRD_RS05785 e6b4250056beffbf5474f882ba2ffac2 199 Gene3D G3DSA:3.40.50.620 36 169 1.3E-23 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS05785 e6b4250056beffbf5474f882ba2ffac2 199 PANTHER PTHR30336 1 199 2.6E-30 T 22-04-2016 TRD_RS06955 aead8b04fc1afcadebc4ba81ebf2458f 108 SUPERFAMILY SSF51182 5 101 2.2E-16 T 22-04-2016 IPR011051 RmlC-like cupin domain TRD_RS06955 aead8b04fc1afcadebc4ba81ebf2458f 108 Pfam PF07883 Cupin domain 37 88 2.8E-9 T 22-04-2016 IPR013096 Cupin 2, conserved barrel TRD_RS06955 aead8b04fc1afcadebc4ba81ebf2458f 108 Gene3D G3DSA:2.60.120.10 22 90 9.5E-14 T 22-04-2016 IPR014710 RmlC-like jelly roll fold TRD_RS05595 fd8ab7f3f5afa4014b674694da146eec 154 SUPERFAMILY SSF109854 6 134 2.75E-9 T 22-04-2016 TRD_RS05595 fd8ab7f3f5afa4014b674694da146eec 154 Pfam PF08020 Protein of unknown function (DUF1706) 7 115 6.9E-10 T 22-04-2016 IPR012550 Protein of unknown function DUF1706 TRD_RS05595 fd8ab7f3f5afa4014b674694da146eec 154 Gene3D G3DSA:1.20.120.450 6 115 9.5E-10 T 22-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase TRD_RS08165 4b432fd7bc3924f04163f3f4f4ff9925 276 Gene3D G3DSA:3.20.20.70 1 273 4.3E-110 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS08165 4b432fd7bc3924f04163f3f4f4ff9925 276 Pfam PF05853 beta-keto acid cleavage enzyme 3 271 1.7E-107 T 22-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 TRD_RS08165 4b432fd7bc3924f04163f3f4f4ff9925 276 PANTHER PTHR37418:SF2 1 274 6.1E-111 T 22-04-2016 TRD_RS08165 4b432fd7bc3924f04163f3f4f4ff9925 276 PANTHER PTHR37418 1 274 6.1E-111 T 22-04-2016 TRD_RS09250 447aef11698d644ee73c94baa6c8b16c 608 Gene3D G3DSA:3.60.10.10 374 605 1.2E-16 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase TRD_RS09250 447aef11698d644ee73c94baa6c8b16c 608 PANTHER PTHR14859:SF0 366 608 4.8E-35 T 22-04-2016 TRD_RS09250 447aef11698d644ee73c94baa6c8b16c 608 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 386 598 3.6E-17 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase TRD_RS09250 447aef11698d644ee73c94baa6c8b16c 608 SUPERFAMILY SSF56219 381 606 6.54E-35 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase TRD_RS09250 447aef11698d644ee73c94baa6c8b16c 608 PANTHER PTHR14859 366 608 4.8E-35 T 22-04-2016 IPR027317 PGAP2-interacting protein TRD_RS06570 e9eb1877ab7edd9ec401021b8f6c7dda 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 269 1.0E-37 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 TRD_RS06570 e9eb1877ab7edd9ec401021b8f6c7dda 287 PANTHER PTHR11795 11 284 1.3E-63 T 22-04-2016 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 6.7E-17 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 6.7E-17 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 223 237 6.7E-17 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 6.7E-17 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 PANTHER PTHR10992 16 168 1.0E-43 T 22-04-2016 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 PANTHER PTHR10992 187 279 1.0E-43 T 22-04-2016 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 Gene3D G3DSA:3.40.50.1820 8 279 1.9E-61 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 Pfam PF12697 Alpha/beta hydrolase family 26 271 1.0E-19 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 TRD_RS06530 ac34c68b02d1929165d974f40d779bb2 281 SUPERFAMILY SSF53474 8 278 3.95E-56 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 Gene3D G3DSA:2.10.109.10 82 213 1.3E-35 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 Hamap MF_00015 LexA repressor [lexA]. 4 213 31.181 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 SUPERFAMILY SSF51306 81 211 4.53E-28 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 PANTHER PTHR33516:SF2 3 214 6.1E-71 T 22-04-2016 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 Pfam PF01726 LexA DNA binding domain 3 66 1.4E-17 T 22-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 136 147 7.4E-8 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 166 178 7.4E-8 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 135 7.4E-8 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 TIGRFAM TIGR00498 lexA: repressor LexA 3 213 2.8E-55 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 SUPERFAMILY SSF46785 4 71 1.45E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 Gene3D G3DSA:1.10.10.10 3 70 7.8E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 PANTHER PTHR33516 3 214 6.1E-71 T 22-04-2016 TRD_RS03050 f73071ad5b83bb5339a4ab488c840a17 214 Pfam PF00717 Peptidase S24-like 128 195 4.7E-11 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B TRD_RS08980 c9fea306fe76e3334d96735aac22ad9c 140 PANTHER PTHR21366 3 135 2.6E-25 T 22-04-2016 TRD_RS08980 c9fea306fe76e3334d96735aac22ad9c 140 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 116 5.5E-20 T 22-04-2016 TRD_RS08980 c9fea306fe76e3334d96735aac22ad9c 140 PANTHER PTHR21366:SF0 3 135 2.6E-25 T 22-04-2016 TRD_RS08980 c9fea306fe76e3334d96735aac22ad9c 140 Gene3D G3DSA:3.10.180.10 5 131 8.3E-37 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS08980 c9fea306fe76e3334d96735aac22ad9c 140 SUPERFAMILY SSF54593 3 133 3.52E-28 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS09065 53b48f493e0f74ce48a5e9ba8346069c 332 Pfam PF00781 Diacylglycerol kinase catalytic domain 21 146 2.7E-25 T 22-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 TRD_RS09065 53b48f493e0f74ce48a5e9ba8346069c 332 SUPERFAMILY SSF111331 21 326 2.4E-73 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain TRD_RS09065 53b48f493e0f74ce48a5e9ba8346069c 332 PANTHER PTHR12358:SF43 18 325 4.6E-64 T 22-04-2016 TRD_RS09065 53b48f493e0f74ce48a5e9ba8346069c 332 SMART SM00046 20 160 4.6E-4 T 22-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 TRD_RS09065 53b48f493e0f74ce48a5e9ba8346069c 332 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 21 324 3.6E-49 T 22-04-2016 IPR005218 Diacylglycerol/lipid kinase TRD_RS09065 53b48f493e0f74ce48a5e9ba8346069c 332 PANTHER PTHR12358 18 325 4.6E-64 T 22-04-2016 TRD_RS05710 a74456ee2059d54299836df6cf94202d 148 Pfam PF03100 CcmE 19 141 1.3E-30 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 TRD_RS05710 a74456ee2059d54299836df6cf94202d 148 PANTHER PTHR34128:SF1 12 118 4.0E-12 T 22-04-2016 TRD_RS05710 a74456ee2059d54299836df6cf94202d 148 PANTHER PTHR34128 12 118 4.0E-12 T 22-04-2016 TRD_RS05710 a74456ee2059d54299836df6cf94202d 148 Gene3D G3DSA:2.40.50.140 43 136 2.5E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS05710 a74456ee2059d54299836df6cf94202d 148 SUPERFAMILY SSF82093 44 143 3.66E-24 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 Gene3D G3DSA:3.30.70.360 179 284 3.0E-17 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01550 2877c49502cf9648ee410c2052223104 373 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 Gene3D G3DSA:3.40.630.10 21 178 1.2E-43 T 22-04-2016 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 Gene3D G3DSA:3.40.630.10 289 370 1.2E-43 T 22-04-2016 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 PANTHER PTHR11014:SF95 18 372 1.5E-67 T 22-04-2016 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 SUPERFAMILY SSF53187 286 370 1.46E-46 T 22-04-2016 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 SUPERFAMILY SSF53187 17 191 1.46E-46 T 22-04-2016 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 SUPERFAMILY SSF55031 179 286 4.49E-16 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01550 2877c49502cf9648ee410c2052223104 373 Pfam PF01546 Peptidase family M20/M25/M40 74 368 1.1E-19 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 TRD_RS01550 2877c49502cf9648ee410c2052223104 373 Pfam PF07687 Peptidase dimerisation domain 179 273 1.7E-14 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain TRD_RS01550 2877c49502cf9648ee410c2052223104 373 PANTHER PTHR11014 18 372 1.5E-67 T 22-04-2016 TRD_RS03785 1eb70dce7ee3ebd565f8403b0cf8368f 779 TIGRFAM TIGR03662 Chlor_Arch_YYY: chlor_Arch_YYY domain 7 773 8.6E-116 T 22-04-2016 IPR018746 Protein of unknown function DUF2298 TRD_RS03785 1eb70dce7ee3ebd565f8403b0cf8368f 779 Pfam PF10060 Uncharacterized membrane protein (DUF2298) 46 561 7.9E-115 T 22-04-2016 IPR018746 Protein of unknown function DUF2298 TRD_RS04140 4b019cbfc51f4d2b81865e3ea5a21bf5 391 SUPERFAMILY SSF53850 93 315 3.72E-26 T 22-04-2016 TRD_RS04140 4b019cbfc51f4d2b81865e3ea5a21bf5 391 Gene3D G3DSA:3.40.190.10 178 263 1.2E-12 T 22-04-2016 TRD_RS04140 4b019cbfc51f4d2b81865e3ea5a21bf5 391 PANTHER PTHR31528 93 388 5.4E-16 T 22-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 TRD_RS04140 4b019cbfc51f4d2b81865e3ea5a21bf5 391 Pfam PF09084 NMT1/THI5 like 90 310 2.4E-19 T 22-04-2016 IPR015168 SsuA/THI5-like TRD_RS03130 81ec53b0e0158b065e76671e41a99338 179 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 22-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03130 81ec53b0e0158b065e76671e41a99338 179 Pfam PF00466 Ribosomal protein L10 5 98 7.9E-25 T 22-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 TRD_RS03130 81ec53b0e0158b065e76671e41a99338 179 PANTHER PTHR11560 1 179 1.8E-53 T 22-04-2016 TRD_RS03130 81ec53b0e0158b065e76671e41a99338 179 SUPERFAMILY SSF160369 3 168 3.79E-51 T 22-04-2016 TRD_RS03130 81ec53b0e0158b065e76671e41a99338 179 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 3 170 0.001 T 22-04-2016 TRD_RS03130 81ec53b0e0158b065e76671e41a99338 179 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 159 25.141 T 22-04-2016 IPR022973 Ribosomal protein L10 TRD_RS01175 3b32b6d5273abf89a7d55ba6076a0235 126 PANTHER PTHR34389 1 114 2.9E-35 T 22-04-2016 TRD_RS01175 3b32b6d5273abf89a7d55ba6076a0235 126 PANTHER PTHR34389:SF3 1 114 2.9E-35 T 22-04-2016 TRD_RS01175 3b32b6d5273abf89a7d55ba6076a0235 126 SUPERFAMILY SSF54909 1 110 3.38E-28 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel TRD_RS01175 3b32b6d5273abf89a7d55ba6076a0235 126 Pfam PF05336 Domain of unknown function (DUF718) 4 109 1.7E-28 T 22-04-2016 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 UniPathway: UPA00125 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 Gene3D G3DSA:2.30.40.10 1 63 4.1E-15 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 Gene3D G3DSA:3.20.20.140 64 352 1.7E-111 T 22-04-2016 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 SUPERFAMILY SSF51556 52 372 2.64E-99 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 Gene3D G3DSA:3.20.20.140 353 380 6.3E-6 T 22-04-2016 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 PANTHER PTHR32027:SF0 4 427 2.1E-136 T 22-04-2016 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 Pfam PF07969 Amidohydrolase family 40 401 2.0E-42 T 22-04-2016 IPR013108 Amidohydrolase 3 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 SUPERFAMILY SSF51338 363 403 6.29E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 SUPERFAMILY SSF51338 1 52 6.29E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 TRD_RS08615 8621c8512a90d12ae1af56d4202d72d8 432 PANTHER PTHR32027 4 427 2.1E-136 T 22-04-2016 TRD_RS04105 0343a4d44f948b0b2dca6cb5c42c6873 280 SUPERFAMILY SSF46565 132 170 3.53E-6 T 22-04-2016 IPR001623 DnaJ domain TRD_RS04105 0343a4d44f948b0b2dca6cb5c42c6873 280 Gene3D G3DSA:1.10.287.110 131 170 8.8E-6 T 22-04-2016 IPR001623 DnaJ domain TRD_RS05580 30e754dcac332644a08380a276f46045 361 Pfam PF08735 Putative pyruvate format-lyase activating enzyme (DUF1786) 64 313 7.4E-82 T 22-04-2016 IPR014846 Protein of unknown function DUF1786, putative pyruvate format-lyase activating enzyme TRD_RS00630 9b7e322160197618ea2cf1fdf0a5ef71 441 Pfam PF07005 Putative sugar-binding N-terminal domain 6 240 2.9E-45 T 22-04-2016 IPR010737 Putative sugar-binding, N-terminal domain TRD_RS00630 9b7e322160197618ea2cf1fdf0a5ef71 441 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 267 431 9.2E-33 T 22-04-2016 IPR031475 Putative nucleotide-binding C-terminal domain TRD_RS00630 9b7e322160197618ea2cf1fdf0a5ef71 441 SUPERFAMILY SSF142764 6 437 5.36E-84 T 22-04-2016 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 SUPERFAMILY SSF161098 12 134 2.13E-10 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 177 334 5.9E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 PANTHER PTHR32243:SF11 168 341 1.3E-62 T 22-04-2016 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 PANTHER PTHR32243:SF11 7 114 1.3E-62 T 22-04-2016 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 Gene3D G3DSA:1.10.3720.10 11 116 1.2E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 Gene3D G3DSA:1.10.3720.10 170 328 1.2E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 PANTHER PTHR32243 168 341 1.3E-62 T 22-04-2016 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 PANTHER PTHR32243 7 114 1.3E-62 T 22-04-2016 TRD_RS01185 65bd5ab73c391a07f68ba7327753a01d 341 SUPERFAMILY SSF161098 142 341 1.14E-45 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 SUPERFAMILY SSF52161 3 140 2.75E-59 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 141 6.4E-63 T 22-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 Gene3D G3DSA:3.90.1180.10 4 141 9.8E-62 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 Pfam PF00572 Ribosomal protein L13 15 139 1.0E-55 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 ProSitePatterns PS00783 Ribosomal protein L13 signature. 106 128 - T 22-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 144 27.363 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 PANTHER PTHR11545 3 141 9.3E-68 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 TRD_RS04375 cf980dbb4733c9c739c049952b08bc27 145 PIRSF PIRSF002181 1 143 1.6E-49 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 PANTHER PTHR33280:SF2 1 95 7.5E-41 T 22-04-2016 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 SUPERFAMILY SSF143800 1 65 1.33E-23 T 22-04-2016 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 Pfam PF01197 Ribosomal protein L31 1 64 2.2E-28 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 PANTHER PTHR33280 1 95 7.5E-41 T 22-04-2016 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.3E-16 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.3E-16 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.3E-16 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 2.4E-27 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06685 d6e7d97a3d0079d2f62f81df936b4a9c 106 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 27.164 T 22-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 Gene3D G3DSA:3.40.50.970 13 188 6.7E-56 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 PANTHER PTHR11624 14 320 1.5E-112 T 22-04-2016 IPR033247 Transketolase family TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 SMART SM00861 13 178 2.9E-51 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 Gene3D G3DSA:3.40.50.920 189 316 2.0E-35 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 PANTHER PTHR11624:SF2 14 320 1.5E-112 T 22-04-2016 TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 Pfam PF02779 Transketolase, pyrimidine binding domain 14 174 9.7E-34 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 SUPERFAMILY SSF52922 186 316 5.37E-33 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 Pfam PF02780 Transketolase, C-terminal domain 189 309 4.5E-29 T 22-04-2016 IPR033248 Transketolase, C-terminal domain TRD_RS02200 ee2f4984b5261e700bc378b340629fe8 320 SUPERFAMILY SSF52518 13 180 2.8E-53 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS13625 5d84c20c7a0ae59b211a2c332c38f407 309 SUPERFAMILY SSF53335 87 267 2.32E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS13625 5d84c20c7a0ae59b211a2c332c38f407 309 PANTHER PTHR10108:SF739 69 294 2.5E-21 T 22-04-2016 TRD_RS13625 5d84c20c7a0ae59b211a2c332c38f407 309 Gene3D G3DSA:3.40.50.150 88 264 2.2E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS13625 5d84c20c7a0ae59b211a2c332c38f407 309 PANTHER PTHR10108 69 294 2.5E-21 T 22-04-2016 TRD_RS13625 5d84c20c7a0ae59b211a2c332c38f407 309 Pfam PF13489 Methyltransferase domain 82 241 3.5E-21 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 PANTHER PTHR11938:SF86 137 155 3.5E-46 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 PANTHER PTHR11938:SF86 1 119 3.5E-46 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 PANTHER PTHR11938:SF86 171 227 3.5E-46 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 Gene3D G3DSA:3.30.70.20 74 109 3.5E-14 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 Gene3D G3DSA:3.30.70.20 110 131 2.7E-4 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 Gene3D G3DSA:3.30.70.20 141 227 5.8E-50 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 Gene3D G3DSA:3.30.70.20 2 72 5.8E-50 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 PANTHER PTHR11938 137 155 3.5E-46 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 PANTHER PTHR11938 1 119 3.5E-46 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 PANTHER PTHR11938 171 227 3.5E-46 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 SUPERFAMILY SSF54862 1 227 2.72E-56 T 22-04-2016 TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 Pfam PF12838 4Fe-4S dicluster domain 12 82 6.6E-8 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS02155 cffc60f27ca95b16956587e2e061404a 241 Pfam PF12838 4Fe-4S dicluster domain 99 185 5.0E-9 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS01955 4f5323c689474f10aa3405242f629381 469 Pfam PF01571 Aminomethyltransferase folate-binding domain 30 255 1.3E-40 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal TRD_RS01955 4f5323c689474f10aa3405242f629381 469 Gene3D G3DSA:3.30.1360.120 36 62 4.3E-21 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 TRD_RS01955 4f5323c689474f10aa3405242f629381 469 Gene3D G3DSA:3.30.1360.120 159 252 4.3E-21 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 TRD_RS01955 4f5323c689474f10aa3405242f629381 469 SUPERFAMILY SSF103025 21 256 4.87E-51 T 22-04-2016 TRD_RS01955 4f5323c689474f10aa3405242f629381 469 SUPERFAMILY SSF103025 292 330 4.87E-51 T 22-04-2016 TRD_RS01955 4f5323c689474f10aa3405242f629381 469 Gene3D G3DSA:3.30.70.1400 63 136 1.1E-8 T 22-04-2016 TRD_RS01955 4f5323c689474f10aa3405242f629381 469 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 316 423 1.0E-7 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 Pfam PF13242 HAD-hyrolase-like 181 230 6.9E-10 T 22-04-2016 TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 Gene3D G3DSA:3.40.50.1000 181 250 9.5E-33 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 Gene3D G3DSA:3.40.50.1000 6 82 9.5E-33 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 SUPERFAMILY SSF56784 5 251 2.8E-51 T 22-04-2016 IPR023214 HAD-like domain TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 PANTHER PTHR19288 1 251 6.1E-64 T 22-04-2016 TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 Gene3D G3DSA:3.40.50.10410 89 180 9.1E-28 T 22-04-2016 IPR023215 Nitrophenylphosphatase-like domain TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 182 220 3.9E-6 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 10 226 4.3E-38 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA TRD_RS06015 e3505ca2d55a5fb1bc041eedbadc8864 251 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 107 2.2E-24 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 Pfam PF05343 M42 glutamyl aminopeptidase 46 337 1.6E-65 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 SUPERFAMILY SSF101821 70 179 9.77E-15 T 22-04-2016 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 Gene3D G3DSA:2.40.30.40 73 162 4.3E-18 T 22-04-2016 IPR023367 Peptidase M42, domain 2 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 PIRSF PIRSF001123 2 349 2.4E-69 T 22-04-2016 IPR008007 Peptidase M42 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 PANTHER PTHR32481 1 346 4.1E-88 T 22-04-2016 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 SUPERFAMILY SSF53187 171 344 2.22E-51 T 22-04-2016 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 SUPERFAMILY SSF53187 6 79 2.22E-51 T 22-04-2016 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 Gene3D G3DSA:3.40.630.10 170 344 8.8E-60 T 22-04-2016 TRD_RS01270 f7a7f5301debce525d6d9fb5297d9afd 349 Gene3D G3DSA:3.40.630.10 2 72 8.8E-60 T 22-04-2016 TRD_RS04715 e5de9db3bac99ab9d35b19ff13697e5c 313 PANTHER PTHR11048:SF5 20 274 1.1E-45 T 22-04-2016 TRD_RS04715 e5de9db3bac99ab9d35b19ff13697e5c 313 PANTHER PTHR11048 20 274 1.1E-45 T 22-04-2016 TRD_RS04715 e5de9db3bac99ab9d35b19ff13697e5c 313 Pfam PF01040 UbiA prenyltransferase family 50 274 1.2E-17 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 TRD_RS09085 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 Gene3D G3DSA:3.50.30.40 28 202 5.2E-43 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS09085 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 PANTHER PTHR33254:SF2 10 248 1.3E-65 T 22-04-2016 TRD_RS09085 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 SUPERFAMILY SSF89562 25 203 5.76E-40 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS09085 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 PANTHER PTHR33254 10 248 1.3E-65 T 22-04-2016 TRD_RS09085 2fdd3eb7ba9d93dbae81c17dd4867ae0 249 Pfam PF03737 Demethylmenaquinone methyltransferase 28 193 9.8E-34 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04450 350fb0fa570ce68fc5f09407f9e0b2d3 124 PANTHER PTHR12899 12 124 1.8E-48 T 22-04-2016 TRD_RS04450 350fb0fa570ce68fc5f09407f9e0b2d3 124 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 124 2.5E-48 T 22-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04450 350fb0fa570ce68fc5f09407f9e0b2d3 124 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 10 124 4.0E-42 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04450 350fb0fa570ce68fc5f09407f9e0b2d3 124 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 7 124 29.486 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04450 350fb0fa570ce68fc5f09407f9e0b2d3 124 Gene3D G3DSA:3.30.420.100 25 124 2.3E-43 T 22-04-2016 TRD_RS04450 350fb0fa570ce68fc5f09407f9e0b2d3 124 SUPERFAMILY SSF53137 11 122 3.05E-53 T 22-04-2016 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PIRSF PIRSF001529 1 424 4.5E-168 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 SUPERFAMILY SSF55681 115 416 1.39E-97 T 22-04-2016 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 Gene3D G3DSA:3.30.930.10 104 418 1.1E-135 T 22-04-2016 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PANTHER PTHR11778 1 440 3.0E-214 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 106 2.9E-29 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 314 327 2.7E-26 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 262 274 2.7E-26 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 274 287 2.7E-26 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 331 347 2.7E-26 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 PRINTS PR00981 Seryl-tRNA synthetase signature 349 365 2.7E-26 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 SUPERFAMILY SSF46589 1 111 1.2E-29 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 420 41.501 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 415 4.0E-154 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 Gene3D G3DSA:1.10.287.40 1 103 1.7E-28 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 TRD_RS08155 36d489aacc7c6a288db5cc3f6e0aed8e 445 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 219 398 8.0E-33 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 TRD_RS01920 722f046f38c662dc1f856db55f59c10b 241 SUPERFAMILY SSF56037 56 228 8.63E-25 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 TRD_RS01920 722f046f38c662dc1f856db55f59c10b 241 Pfam PF03483 B3/4 domain 65 199 4.0E-16 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 TRD_RS01920 722f046f38c662dc1f856db55f59c10b 241 SMART SM00873 63 217 1.3E-6 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 TRD_RS01920 722f046f38c662dc1f856db55f59c10b 241 PANTHER PTHR39209:SF2 1 234 3.8E-54 T 22-04-2016 TRD_RS01920 722f046f38c662dc1f856db55f59c10b 241 PANTHER PTHR39209 1 234 3.8E-54 T 22-04-2016 TRD_RS01920 722f046f38c662dc1f856db55f59c10b 241 Gene3D G3DSA:3.50.40.10 65 200 2.4E-9 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 PANTHER PTHR21666 291 425 7.6E-40 T 22-04-2016 TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 Gene3D G3DSA:3.90.1720.10 297 425 7.2E-46 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 SMART SM00287 204 274 1.1 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 SMART SM00287 111 182 2.5 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 SMART SM00287 37 107 0.018 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 Pfam PF00877 NlpC/P60 family 317 424 1.6E-26 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 Pfam PF08239 Bacterial SH3 domain 215 270 2.9E-7 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 Pfam PF08239 Bacterial SH3 domain 47 103 9.4E-14 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type TRD_RS00890 3d047a7a149208020f155fa6f4e9626c 427 SUPERFAMILY SSF54001 295 425 1.41E-43 T 22-04-2016 TRD_RS06970 a3d648cbceca40b6a4444680b8aef361 343 PANTHER PTHR11516 14 336 1.0E-161 T 22-04-2016 TRD_RS06970 a3d648cbceca40b6a4444680b8aef361 343 Gene3D G3DSA:3.40.50.970 14 337 1.1E-135 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS06970 a3d648cbceca40b6a4444680b8aef361 343 SUPERFAMILY SSF52518 14 338 3.8E-108 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold TRD_RS06970 a3d648cbceca40b6a4444680b8aef361 343 Pfam PF00676 Dehydrogenase E1 component 26 323 1.1E-97 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PIRSF PIRSF000723 1 313 2.7E-125 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 74 92 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 109 128 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 158 177 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 181 199 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 43 62 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 267 282 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PRINTS PR01469 Bacterial carbamate kinase signature 212 227 2.3E-59 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 Pfam PF00696 Amino acid kinase family 3 289 1.9E-35 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 Gene3D G3DSA:3.40.1160.10 2 312 2.6E-99 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 SUPERFAMILY SSF53633 1 311 3.01E-82 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 TIGRFAM TIGR00746 arcC: carbamate kinase 2 312 2.5E-115 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PANTHER PTHR30409:SF1 1 314 8.4E-144 T 22-04-2016 TRD_RS02640 77d4f9dad6431dc3c43f9e719b21ac34 315 PANTHER PTHR30409 1 314 8.4E-144 T 22-04-2016 TRD_RS09955 bd54db868d8e9654eb4accd94bfb5ab5 259 Gene3D G3DSA:3.40.190.10 5 103 1.6E-8 T 22-04-2016 TRD_RS09955 bd54db868d8e9654eb4accd94bfb5ab5 259 SUPERFAMILY SSF53850 2 237 4.03E-35 T 22-04-2016 TRD_RS09955 bd54db868d8e9654eb4accd94bfb5ab5 259 PANTHER PTHR30061 6 236 2.8E-25 T 22-04-2016 TRD_RS09955 bd54db868d8e9654eb4accd94bfb5ab5 259 Pfam PF01547 Bacterial extracellular solute-binding protein 3 237 2.7E-18 T 22-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 TRD_RS09955 bd54db868d8e9654eb4accd94bfb5ab5 259 Gene3D G3DSA:3.40.190.10 104 236 2.3E-22 T 22-04-2016 TRD_RS06915 84938a761eaf60eb7d7839abc1cc521b 145 Pfam PF00582 Universal stress protein family 1 136 8.2E-17 T 22-04-2016 IPR006016 UspA GO:0006950 TRD_RS06915 84938a761eaf60eb7d7839abc1cc521b 145 SUPERFAMILY SSF52402 1 136 4.77E-18 T 22-04-2016 TRD_RS06915 84938a761eaf60eb7d7839abc1cc521b 145 Gene3D G3DSA:3.40.50.620 1 136 2.5E-18 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold TRD_RS04625 5b3bbe0f1bd9cb9d8c9a9c088a3adae3 139 PANTHER PTHR11907:SF9 26 138 1.7E-29 T 22-04-2016 TRD_RS04625 5b3bbe0f1bd9cb9d8c9a9c088a3adae3 139 PANTHER PTHR11907 26 138 1.7E-29 T 22-04-2016 TRD_RS04625 5b3bbe0f1bd9cb9d8c9a9c088a3adae3 139 SUPERFAMILY SSF53271 8 136 3.41E-20 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS04625 5b3bbe0f1bd9cb9d8c9a9c088a3adae3 139 Gene3D G3DSA:3.40.50.2020 5 137 2.0E-22 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 PANTHER PTHR15184 1 485 7.2E-298 T 22-04-2016 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 PIRSF PIRSF039088 1 502 2.6E-248 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Gene3D G3DSA:2.40.30.20 2 93 4.1E-35 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 499 5.9E-249 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 5.8E-71 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Gene3D G3DSA:3.40.50.300 95 371 1.9E-115 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 SUPERFAMILY SSF50615 10 94 1.28E-28 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 496 2.3E-48 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 SUPERFAMILY SSF52540 96 370 5.96E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Gene3D G3DSA:1.20.150.20 372 500 1.5E-52 T 22-04-2016 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 SUPERFAMILY SSF47917 373 500 9.94E-45 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 PANTHER PTHR15184:SF3 1 485 7.2E-298 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 24 92 1.5E-17 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS05745 eba4b1a4a3886600139750f12a84633a 510 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 501 50.543 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 128 50.594 T 22-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 7 117 1.1E-55 T 22-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 Pfam PF14489 QueF-like protein 40 118 4.8E-34 T 22-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 SUPERFAMILY SSF55620 4 109 1.19E-28 T 22-04-2016 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 Gene3D G3DSA:3.30.1130.10 4 124 6.4E-48 T 22-04-2016 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 PANTHER PTHR34354:SF1 8 128 6.9E-53 T 22-04-2016 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 PIRSF PIRSF027377 1 124 1.3E-53 T 22-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 TRD_RS07865 69ee0f1070089aa11c6eaccf72f6248b 128 PANTHER PTHR34354 8 128 6.9E-53 T 22-04-2016 TRD_RS13470 15f1501db643235cd7676343b4949ed3 503 Gene3D G3DSA:3.40.710.10 4 250 2.2E-78 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS13470 15f1501db643235cd7676343b4949ed3 503 PANTHER PTHR21581 8 250 2.3E-65 T 22-04-2016 TRD_RS13470 15f1501db643235cd7676343b4949ed3 503 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 5 231 7.6E-45 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 TRD_RS13470 15f1501db643235cd7676343b4949ed3 503 SUPERFAMILY SSF56601 3 250 1.35E-59 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS13470 15f1501db643235cd7676343b4949ed3 503 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 38 49 1.4E-6 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 TRD_RS13470 15f1501db643235cd7676343b4949ed3 503 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 85 102 1.4E-6 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 TRD_RS07125 9f4d7a7f3d4e605d6016291eb63b2205 315 PANTHER PTHR30465 1 313 2.3E-129 T 22-04-2016 TRD_RS07125 9f4d7a7f3d4e605d6016291eb63b2205 315 PANTHER PTHR30465:SF0 1 313 2.3E-129 T 22-04-2016 TRD_RS07125 9f4d7a7f3d4e605d6016291eb63b2205 315 Gene3D G3DSA:1.10.3720.10 91 309 5.1E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07125 9f4d7a7f3d4e605d6016291eb63b2205 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 313 4.9E-44 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07125 9f4d7a7f3d4e605d6016291eb63b2205 315 SUPERFAMILY SSF161098 92 299 8.34E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00870 f9645573db1550705a7ea74915842e19 213 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 198 5.3E-66 T 22-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 TRD_RS00870 f9645573db1550705a7ea74915842e19 213 Gene3D G3DSA:3.40.50.880 2 202 8.1E-80 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00870 f9645573db1550705a7ea74915842e19 213 PANTHER PTHR21235 2 204 1.4E-80 T 22-04-2016 TRD_RS00870 f9645573db1550705a7ea74915842e19 213 PANTHER PTHR21235:SF1 2 204 1.4E-80 T 22-04-2016 TRD_RS00870 f9645573db1550705a7ea74915842e19 213 PIRSF PIRSF000495 1 202 4.3E-66 T 22-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 TRD_RS00870 f9645573db1550705a7ea74915842e19 213 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 199 34.828 T 22-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 TRD_RS00870 f9645573db1550705a7ea74915842e19 213 SUPERFAMILY SSF52317 1 202 4.86E-61 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS00870 f9645573db1550705a7ea74915842e19 213 Pfam PF00117 Glutamine amidotransferase class-I 3 196 2.2E-21 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 PANTHER PTHR11746:SF63 5 322 2.2E-35 T 22-04-2016 TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 Pfam PF00891 O-methyltransferase 105 316 4.5E-21 T 22-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 SUPERFAMILY SSF53335 99 326 8.97E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 Pfam PF16864 Dimerisation domain 10 91 1.3E-7 T 22-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 SUPERFAMILY SSF46785 5 83 8.38E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 PANTHER PTHR11746 5 322 2.2E-35 T 22-04-2016 TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 Gene3D G3DSA:3.40.50.150 146 323 4.3E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS06010 0c5ee2774da786f75b6daa44ac5d7bd0 347 Gene3D G3DSA:1.10.10.10 5 98 2.5E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04245 22e8af8cde3fe0a1a7b491ae487e3fcb 285 SUPERFAMILY SSF103481 35 135 6.93E-15 T 22-04-2016 TRD_RS04245 22e8af8cde3fe0a1a7b491ae487e3fcb 285 SUPERFAMILY SSF103481 187 285 9.94E-11 T 22-04-2016 TRD_RS04245 22e8af8cde3fe0a1a7b491ae487e3fcb 285 PANTHER PTHR22911 2 284 4.6E-43 T 22-04-2016 TRD_RS04245 22e8af8cde3fe0a1a7b491ae487e3fcb 285 Pfam PF00892 EamA-like transporter family 2 133 1.3E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 TRD_RS04245 22e8af8cde3fe0a1a7b491ae487e3fcb 285 Pfam PF00892 EamA-like transporter family 145 283 2.6E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 TRD_RS06195 97dfdeacc0f5a337b42cfcce002a96d8 326 SUPERFAMILY SSF56300 17 70 7.45E-67 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06195 97dfdeacc0f5a337b42cfcce002a96d8 326 SUPERFAMILY SSF56300 115 322 7.45E-67 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06195 97dfdeacc0f5a337b42cfcce002a96d8 326 Pfam PF00149 Calcineurin-like phosphoesterase 20 282 6.8E-5 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 TRD_RS06195 97dfdeacc0f5a337b42cfcce002a96d8 326 Gene3D G3DSA:3.60.21.10 19 53 1.2E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06195 97dfdeacc0f5a337b42cfcce002a96d8 326 Gene3D G3DSA:3.60.21.10 124 315 1.2E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like TRD_RS06195 97dfdeacc0f5a337b42cfcce002a96d8 326 PANTHER PTHR37523 13 322 3.6E-58 T 22-04-2016 TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 PANTHER PTHR32328:SF1 105 378 5.1E-35 T 22-04-2016 TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 PANTHER PTHR32328:SF1 2 84 5.1E-35 T 22-04-2016 TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 SUPERFAMILY SSF53383 23 374 3.59E-34 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 Pfam PF03841 L-seryl-tRNA selenium transferase 20 272 2.5E-10 T 22-04-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 Gene3D G3DSA:3.40.640.10 27 239 1.5E-29 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 PANTHER PTHR32328 105 378 5.1E-35 T 22-04-2016 TRD_RS05270 086d3f511acfbd80fd1980cecea3dfff 378 PANTHER PTHR32328 2 84 5.1E-35 T 22-04-2016 TRD_RS00965 6c9f75502285ae6acd4ae4d89d9b9ab8 206 Pfam PF12773 Double zinc ribbon 95 138 7.6E-12 T 22-04-2016 IPR025874 Double zinc ribbon TRD_RS00595 171eb9bf32029909b4c6a2f9cdafb9c0 165 SUPERFAMILY SSF55961 16 155 1.28E-27 T 22-04-2016 TRD_RS00595 171eb9bf32029909b4c6a2f9cdafb9c0 165 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 19 154 2.1E-15 T 22-04-2016 IPR010419 Carbon monoxide dehydrogenase subunit G TRD_RS00595 171eb9bf32029909b4c6a2f9cdafb9c0 165 Gene3D G3DSA:3.30.530.20 17 162 2.6E-29 T 22-04-2016 IPR023393 START-like domain TRD_RS00595 171eb9bf32029909b4c6a2f9cdafb9c0 165 PANTHER PTHR38588 12 159 2.8E-15 T 22-04-2016 TRD_RS00595 171eb9bf32029909b4c6a2f9cdafb9c0 165 PANTHER PTHR38588:SF1 12 159 2.8E-15 T 22-04-2016 TRD_RS02695 3c0706dde1311edc93e26c60255f427a 81 SUPERFAMILY SSF54637 1 72 2.24E-14 T 22-04-2016 IPR029069 HotDog domain TRD_RS02695 3c0706dde1311edc93e26c60255f427a 81 Gene3D G3DSA:3.10.129.10 1 72 6.4E-16 T 22-04-2016 IPR029069 HotDog domain TRD_RS06695 cc7e7d523345a9c4c4edf8223ad39f66 107 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 22-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06695 cc7e7d523345a9c4c4edf8223ad39f66 107 Pfam PF00829 Ribosomal prokaryotic L21 protein 2 101 2.4E-38 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 TRD_RS06695 cc7e7d523345a9c4c4edf8223ad39f66 107 SUPERFAMILY SSF141091 2 102 5.1E-36 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 TRD_RS06695 cc7e7d523345a9c4c4edf8223ad39f66 107 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.026 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06695 cc7e7d523345a9c4c4edf8223ad39f66 107 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 4.7E-33 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06695 cc7e7d523345a9c4c4edf8223ad39f66 107 PANTHER PTHR21349 1 103 3.8E-38 T 22-04-2016 TRD_RS07215 cb8abcb34207383659fde88d82b70d2d 183 SUPERFAMILY SSF57845 4 36 1.03E-5 T 22-04-2016 TRD_RS07215 cb8abcb34207383659fde88d82b70d2d 183 Pfam PF00643 B-box zinc finger 7 36 1.3E-6 T 22-04-2016 IPR000315 B-box-type zinc finger GO:0005622|GO:0008270 TRD_RS07215 cb8abcb34207383659fde88d82b70d2d 183 Gene3D G3DSA:4.10.45.10 6 35 8.7E-4 T 22-04-2016 IPR000315 B-box-type zinc finger GO:0005622|GO:0008270 TRD_RS05485 021e2bd2699f3c2d9310d00c2bc3d6da 252 PANTHER PTHR13799 1 245 3.2E-51 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 TRD_RS05485 021e2bd2699f3c2d9310d00c2bc3d6da 252 Gene3D G3DSA:3.40.1390.30 4 108 8.3E-30 T 22-04-2016 TRD_RS05485 021e2bd2699f3c2d9310d00c2bc3d6da 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 250 3.2E-53 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 TRD_RS05485 021e2bd2699f3c2d9310d00c2bc3d6da 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 239 1.7E-53 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 TRD_RS05485 021e2bd2699f3c2d9310d00c2bc3d6da 252 Gene3D G3DSA:3.40.1390.30 109 219 1.4E-24 T 22-04-2016 TRD_RS05485 021e2bd2699f3c2d9310d00c2bc3d6da 252 SUPERFAMILY SSF102705 4 251 1.09E-64 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 TRD_RS08725 73e058fb0d1a170a5a057efdba60013d 371 Pfam PF01924 Hydrogenase formation hypA family 12 361 1.8E-154 T 22-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 TRD_RS08725 73e058fb0d1a170a5a057efdba60013d 371 PIRSF PIRSF005622 1 367 2.4E-156 T 22-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 TRD_RS08725 73e058fb0d1a170a5a057efdba60013d 371 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 363 3.1E-148 T 22-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 TRD_RS08725 73e058fb0d1a170a5a057efdba60013d 371 PANTHER PTHR30149 2 361 1.0E-193 T 22-04-2016 TRD_RS08725 73e058fb0d1a170a5a057efdba60013d 371 PANTHER PTHR30149:SF0 2 361 1.0E-193 T 22-04-2016 TRD_RS06055 ac10f6dbcdc8a63b441eaf8f4b048b32 153 Gene3D G3DSA:1.10.1510.10 3 91 1.0E-30 T 22-04-2016 TRD_RS06055 ac10f6dbcdc8a63b441eaf8f4b048b32 153 PANTHER PTHR28055 2 150 7.4E-52 T 22-04-2016 TRD_RS06055 ac10f6dbcdc8a63b441eaf8f4b048b32 153 Pfam PF09424 Yqey-like protein 6 147 4.6E-44 T 22-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial TRD_RS06055 ac10f6dbcdc8a63b441eaf8f4b048b32 153 SUPERFAMILY SSF89095 4 147 1.1E-34 T 22-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 TRD_RS06055 ac10f6dbcdc8a63b441eaf8f4b048b32 153 Gene3D G3DSA:1.10.10.410 92 148 2.7E-15 T 22-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal TRD_RS06055 ac10f6dbcdc8a63b441eaf8f4b048b32 153 PANTHER PTHR28055:SF1 2 150 7.4E-52 T 22-04-2016 TRD_RS04030 4ea1d99716ce8e0d10ee52dd0026e676 283 SUPERFAMILY SSF161098 26 280 1.87E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04030 4ea1d99716ce8e0d10ee52dd0026e676 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 279 1.9E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04030 4ea1d99716ce8e0d10ee52dd0026e676 283 PANTHER PTHR30193:SF20 1 281 2.4E-78 T 22-04-2016 TRD_RS04030 4ea1d99716ce8e0d10ee52dd0026e676 283 Gene3D G3DSA:1.10.3720.10 28 281 6.1E-58 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04030 4ea1d99716ce8e0d10ee52dd0026e676 283 PANTHER PTHR30193 1 281 2.4E-78 T 22-04-2016 TRD_RS09175 0d9e2bcbbcf6041a66d091dbcf887cca 193 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 90 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 TRD_RS09175 0d9e2bcbbcf6041a66d091dbcf887cca 193 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 90 1.9E-14 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 TRD_RS02755 b168b2900e50a9b5144a75cd6801e6a4 303 Hamap MF_01818 Ribonuclease BN [rbn]. 2 298 30.182 T 22-04-2016 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 TRD_RS02755 b168b2900e50a9b5144a75cd6801e6a4 303 Pfam PF12706 Beta-lactamase superfamily domain 31 266 6.6E-20 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS02755 b168b2900e50a9b5144a75cd6801e6a4 303 Gene3D G3DSA:3.60.15.10 5 298 4.1E-65 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS02755 b168b2900e50a9b5144a75cd6801e6a4 303 PANTHER PTHR12553 2 149 1.8E-56 T 22-04-2016 TRD_RS02755 b168b2900e50a9b5144a75cd6801e6a4 303 PANTHER PTHR12553 177 285 1.8E-56 T 22-04-2016 TRD_RS02755 b168b2900e50a9b5144a75cd6801e6a4 303 SUPERFAMILY SSF56281 4 280 5.5E-66 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS10500 4d9cf107b8d296b63895595a88813745 217 Pfam PF01935 Domain of unknown function DUF87 48 203 1.0E-27 T 22-04-2016 IPR002789 Helicase HerA, central domain TRD_RS10500 4d9cf107b8d296b63895595a88813745 217 SUPERFAMILY SSF52540 43 202 6.34E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS10500 4d9cf107b8d296b63895595a88813745 217 PANTHER PTHR30121 2 204 7.2E-43 T 22-04-2016 TRD_RS10500 4d9cf107b8d296b63895595a88813745 217 PANTHER PTHR30121:SF3 2 204 7.2E-43 T 22-04-2016 TRD_RS10500 4d9cf107b8d296b63895595a88813745 217 Gene3D G3DSA:3.40.50.300 51 132 4.0E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 68 81 - T 22-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 SUPERFAMILY SSF53218 4 156 1.14E-45 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 PIRSF PIRSF006443 1 160 2.1E-62 T 22-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 SMART SM00852 10 154 1.1E-30 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 7 149 1.1E-36 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 Pfam PF00994 Probable molybdopterin binding domain 10 153 3.3E-34 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 PANTHER PTHR10192 1 159 1.9E-72 T 22-04-2016 TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 PANTHER PTHR10192:SF18 1 159 1.9E-72 T 22-04-2016 TRD_RS04815 d66336138ce26815016b92c5984ebf08 160 Gene3D G3DSA:3.40.980.10 3 157 2.0E-48 T 22-04-2016 IPR001453 MoaB/Mog domain TRD_RS10285 080b5c88bf7361587984cccd68cd5597 308 SUPERFAMILY SSF53335 32 301 1.36E-59 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS10285 080b5c88bf7361587984cccd68cd5597 308 PANTHER PTHR11061 2 301 7.8E-88 T 22-04-2016 TRD_RS10285 080b5c88bf7361587984cccd68cd5597 308 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 188 271 9.1E-8 T 22-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 TRD_RS10285 080b5c88bf7361587984cccd68cd5597 308 PANTHER PTHR11061:SF30 2 301 7.8E-88 T 22-04-2016 TRD_RS10285 080b5c88bf7361587984cccd68cd5597 308 Gene3D G3DSA:3.40.50.150 174 302 8.1E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS10285 080b5c88bf7361587984cccd68cd5597 308 Gene3D G3DSA:2.40.50.140 2 44 9.3E-12 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold TRD_RS02240 dcf3d269e71b5598ecdc0873c57f51ad 121 PANTHER PTHR33930 1 121 1.1E-49 T 22-04-2016 TRD_RS02240 dcf3d269e71b5598ecdc0873c57f51ad 121 SUPERFAMILY SSF69118 8 111 4.71E-22 T 22-04-2016 IPR029032 AhpD-like TRD_RS02240 dcf3d269e71b5598ecdc0873c57f51ad 121 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 43 91 9.3E-9 T 22-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 TRD_RS02240 dcf3d269e71b5598ecdc0873c57f51ad 121 Pfam PF02627 Carboxymuconolactone decarboxylase family 32 108 1.3E-13 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 TRD_RS02240 dcf3d269e71b5598ecdc0873c57f51ad 121 PANTHER PTHR33930:SF1 1 121 1.1E-49 T 22-04-2016 TRD_RS02240 dcf3d269e71b5598ecdc0873c57f51ad 121 Gene3D G3DSA:1.20.1290.10 6 116 4.6E-27 T 22-04-2016 IPR029032 AhpD-like TRD_RS05805 c3a2bbe45f116656907689c811c5460f 293 PANTHER PTHR30606:SF2 26 279 4.2E-33 T 22-04-2016 TRD_RS05805 c3a2bbe45f116656907689c811c5460f 293 PANTHER PTHR30606 26 279 4.2E-33 T 22-04-2016 TRD_RS05805 c3a2bbe45f116656907689c811c5460f 293 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 22 279 1.1E-23 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 PANTHER PTHR24220:SF586 3 315 2.4E-117 T 22-04-2016 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 293 3.4E-20 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 Gene3D G3DSA:3.40.50.300 1 252 4.6E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 229 313 5.0E-26 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 Pfam PF00005 ABC transporter 22 179 2.8E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 PANTHER PTHR24220 3 315 2.4E-117 T 22-04-2016 TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 SUPERFAMILY SSF52540 32 308 6.66E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS09125 790a52438fa8ebac36a761e50bbd2f80 320 SMART SM00382 30 228 8.5E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS05835 847ca90e7888ba8fd8346f873708e78b 105 Pfam PF01250 Ribosomal protein S6 11 102 1.7E-26 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS05835 847ca90e7888ba8fd8346f873708e78b 105 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 8 105 20.118 T 22-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS05835 847ca90e7888ba8fd8346f873708e78b 105 TIGRFAM TIGR00166 S6: ribosomal protein bS6 10 104 1.1E-23 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS05835 847ca90e7888ba8fd8346f873708e78b 105 SUPERFAMILY SSF54995 9 105 1.7E-29 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 TRD_RS05835 847ca90e7888ba8fd8346f873708e78b 105 PANTHER PTHR21011 9 105 2.0E-25 T 22-04-2016 TRD_RS05835 847ca90e7888ba8fd8346f873708e78b 105 Gene3D G3DSA:3.30.70.60 9 105 9.8E-32 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 TRD_RS02260 faf14f1de49d94ccfd74a14eeafa7e75 328 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 4 303 3.4E-56 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS02260 faf14f1de49d94ccfd74a14eeafa7e75 328 PANTHER PTHR39087 2 325 9.4E-36 T 22-04-2016 TRD_RS02260 faf14f1de49d94ccfd74a14eeafa7e75 328 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 8 306 2.1E-24 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 2 210 1.7E-86 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 PANTHER PTHR11760:SF19 2 218 1.6E-115 T 22-04-2016 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 Gene3D G3DSA:3.30.300.20 17 108 5.7E-32 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 207 35.668 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 SMART SM00322 61 126 5.5E-10 T 22-04-2016 IPR004087 K Homology domain GO:0003676 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 Pfam PF00189 Ribosomal protein S3, C-terminal domain 121 203 1.1E-31 T 22-04-2016 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 PANTHER PTHR11760 2 218 1.6E-115 T 22-04-2016 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 SUPERFAMILY SSF54821 109 207 2.22E-36 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 SUPERFAMILY SSF54814 2 107 3.66E-35 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 Pfam PF07650 KH domain 40 112 1.9E-20 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 TRD_RS04495 8f9a1e57be68addb3cdbe47f46dd5082 223 Gene3D G3DSA:3.30.1140.32 109 208 3.5E-38 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 PANTHER PTHR21057:SF1 2 345 5.9E-190 T 22-04-2016 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 PANTHER PTHR21057 2 345 5.9E-190 T 22-04-2016 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 SUPERFAMILY SSF51569 1 337 1.92E-117 T 22-04-2016 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 Gene3D G3DSA:3.30.70.1140 1 71 6.2E-23 T 22-04-2016 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 72 328 1.5E-120 T 22-04-2016 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 Gene3D G3DSA:3.20.20.70 73 336 8.2E-105 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00530 d6ef542c708fdc4a08828ac73cc49b3e 352 Pfam PF00793 DAHP synthetase I family 87 323 4.2E-78 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 SUPERFAMILY SSF51230 1 92 3.01E-24 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 SUPERFAMILY SSF47005 117 161 1.57E-12 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 438 2.0E-160 T 22-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 Pfam PF02817 e3 binding domain 122 157 9.2E-16 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 PANTHER PTHR23151 209 438 1.0E-217 T 22-04-2016 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 PANTHER PTHR23151 3 188 1.0E-217 T 22-04-2016 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 209 437 2.3E-83 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 SUPERFAMILY SSF52777 209 437 6.67E-90 T 22-04-2016 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 Pfam PF00364 Biotin-requiring enzyme 4 76 9.7E-20 T 22-04-2016 IPR000089 Biotin/lipoyl attachment TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 Gene3D G3DSA:2.40.50.100 1 93 3.9E-27 T 22-04-2016 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 PANTHER PTHR23151:SF47 209 438 1.0E-217 T 22-04-2016 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 PANTHER PTHR23151:SF47 3 188 1.0E-217 T 22-04-2016 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 Gene3D G3DSA:4.10.320.10 119 167 5.7E-20 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 TRD_RS02595 1e2d4609cf3d64421fbac64fa107d194 439 Gene3D G3DSA:3.30.559.10 205 437 4.1E-91 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 PANTHER PTHR30061 1 505 9.3E-44 T 22-04-2016 TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 Pfam PF01547 Bacterial extracellular solute-binding protein 83 392 5.0E-23 T 22-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 Gene3D G3DSA:3.40.190.10 181 379 2.0E-31 T 22-04-2016 TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 Gene3D G3DSA:3.40.190.10 380 394 1.2E-11 T 22-04-2016 TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 Gene3D G3DSA:3.40.190.10 11 174 1.2E-11 T 22-04-2016 TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 SUPERFAMILY SSF53850 23 29 1.69E-52 T 22-04-2016 TRD_RS00650 3239033302da81bb883a46a5bf4a2c1e 510 SUPERFAMILY SSF53850 59 483 1.69E-52 T 22-04-2016 TRD_RS04370 61cc18e258186cda4e0496ac6c07358f 143 Pfam PF00380 Ribosomal protein S9/S16 22 143 5.5E-45 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 TRD_RS04370 61cc18e258186cda4e0496ac6c07358f 143 Gene3D G3DSA:3.30.230.10 16 143 4.7E-50 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup TRD_RS04370 61cc18e258186cda4e0496ac6c07358f 143 ProSitePatterns PS00360 Ribosomal protein S9 signature. 82 100 - T 22-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 TRD_RS04370 61cc18e258186cda4e0496ac6c07358f 143 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 13 143 33.694 T 22-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid TRD_RS04370 61cc18e258186cda4e0496ac6c07358f 143 PANTHER PTHR21569 16 143 1.9E-61 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 TRD_RS04370 61cc18e258186cda4e0496ac6c07358f 143 SUPERFAMILY SSF54211 16 143 5.69E-46 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold TRD_RS03150 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 230 310 1.1E-6 T 22-04-2016 IPR012505 YbbR-like TRD_RS03150 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 46 122 4.9E-6 T 22-04-2016 IPR012505 YbbR-like TRD_RS03150 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 325 403 2.2E-6 T 22-04-2016 IPR012505 YbbR-like TRD_RS03150 026ecf2f36e8fd5f88d8a1a52c8190b5 414 Pfam PF07949 YbbR-like protein 131 215 1.9E-11 T 22-04-2016 IPR012505 YbbR-like TRD_RS03150 026ecf2f36e8fd5f88d8a1a52c8190b5 414 PANTHER PTHR37804 2 409 4.8E-19 T 22-04-2016 TRD_RS08950 e00f83b30fe59f6fe1041c09f8345042 593 PANTHER PTHR33393:SF4 430 588 1.3E-21 T 22-04-2016 TRD_RS08950 e00f83b30fe59f6fe1041c09f8345042 593 PANTHER PTHR33393 430 588 1.3E-21 T 22-04-2016 TRD_RS08950 e00f83b30fe59f6fe1041c09f8345042 593 Gene3D G3DSA:3.20.20.80 69 399 7.1E-31 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS08950 e00f83b30fe59f6fe1041c09f8345042 593 Pfam PF11790 Glycosyl hydrolase catalytic core 206 356 5.5E-7 T 22-04-2016 IPR024655 Uncharacterised protein family, glycosyl hydrolase catalytic domain TRD_RS08950 e00f83b30fe59f6fe1041c09f8345042 593 SUPERFAMILY SSF51445 51 399 2.15E-32 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS00690 41af3ba86320493ba1366499675ef7ed 154 PANTHER PTHR11715 10 147 7.6E-49 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00690 41af3ba86320493ba1366499675ef7ed 154 Pfam PF01597 Glycine cleavage H-protein 22 134 9.8E-29 T 22-04-2016 IPR002930 Glycine cleavage system H-protein TRD_RS00690 41af3ba86320493ba1366499675ef7ed 154 PANTHER PTHR11715:SF13 10 147 7.6E-49 T 22-04-2016 TRD_RS00690 41af3ba86320493ba1366499675ef7ed 154 SUPERFAMILY SSF51230 21 135 9.82E-24 T 22-04-2016 IPR011053 Single hybrid motif TRD_RS00690 41af3ba86320493ba1366499675ef7ed 154 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 60 89 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site TRD_RS00690 41af3ba86320493ba1366499675ef7ed 154 Gene3D G3DSA:2.40.50.100 23 134 4.3E-25 T 22-04-2016 TRD_RS02085 c4b91506440df681915b2c4a6d101a15 268 Pfam PF04250 Protein of unknown function (DUF429) 2 248 2.3E-11 T 22-04-2016 IPR007362 Protein of unknown function DUF429 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 PANTHER PTHR10098 83 321 5.0E-27 T 22-04-2016 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 PANTHER PTHR10098 423 676 5.0E-27 T 22-04-2016 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 145 178 71.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 585 618 0.02 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 465 498 350.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 225 258 59.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 265 298 48.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 505 538 27.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 345 378 110.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 545 578 15.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 185 218 220.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SMART SM00028 305 338 200.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SUPERFAMILY SSF48452 457 665 3.98E-21 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SUPERFAMILY SSF48452 260 470 4.78E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 SUPERFAMILY SSF48452 127 260 3.97E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 PANTHER PTHR10098:SF104 83 321 5.0E-27 T 22-04-2016 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 PANTHER PTHR10098:SF104 423 676 5.0E-27 T 22-04-2016 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 143 442 4.8E-28 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 443 561 1.6E-15 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 Pfam PF13424 Tetratricopeptide repeat 548 617 1.2E-9 T 22-04-2016 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 Pfam PF13424 Tetratricopeptide repeat 265 330 9.6E-8 T 22-04-2016 TRD_RS00025 43a60d2b9165dcfc576c6c680384b565 707 Gene3D G3DSA:1.25.40.10 562 654 3.5E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS08135 427f53d2f0a65fe1ce9781da02535977 119 Pfam PF01594 Domain of unknown function DUF20 6 119 9.3E-12 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like TRD_RS05700 04124d71bc8b6d112b2ccd1009156c06 161 Pfam PF03918 Cytochrome C biogenesis protein 31 154 3.0E-34 T 22-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family TRD_RS05700 04124d71bc8b6d112b2ccd1009156c06 161 PANTHER PTHR30009:SF7 29 156 6.2E-17 T 22-04-2016 TRD_RS05700 04124d71bc8b6d112b2ccd1009156c06 161 PANTHER PTHR30009 29 156 6.2E-17 T 22-04-2016 TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 2.7E-101 T 22-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PANTHER PTHR24322:SF328 155 187 2.3E-65 T 22-04-2016 TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PANTHER PTHR24322:SF328 10 139 2.3E-65 T 22-04-2016 TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.1E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.1E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 1.5E-73 T 22-04-2016 TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 4.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 4.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 4.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 4.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 Gene3D G3DSA:3.40.50.720 7 247 1.8E-94 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PANTHER PTHR24322 155 187 2.3E-65 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 PANTHER PTHR24322 10 139 2.3E-65 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 SUPERFAMILY SSF51735 8 247 6.92E-91 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07580 ca8de683c2c3e13258e0a4d863df58da 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 5.8E-8 T 22-04-2016 TRD_RS08160 5ca479f8cf17d2000e42726ae6a0d9ca 351 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 120 337 6.1E-20 T 22-04-2016 IPR005079 Peptidase C45 TRD_RS08160 5ca479f8cf17d2000e42726ae6a0d9ca 351 PANTHER PTHR34180 1 349 2.4E-35 T 22-04-2016 TRD_RS00570 d39507197d06f9e3531b72543e4d281b 146 Gene3D G3DSA:3.10.129.10 2 144 3.7E-44 T 22-04-2016 IPR029069 HotDog domain TRD_RS00570 d39507197d06f9e3531b72543e4d281b 146 SUPERFAMILY SSF54637 7 143 2.36E-42 T 22-04-2016 IPR029069 HotDog domain TRD_RS00570 d39507197d06f9e3531b72543e4d281b 146 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 17 34 - T 22-04-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 TRD_RS00570 d39507197d06f9e3531b72543e4d281b 146 PANTHER PTHR31793 1 143 1.3E-32 T 22-04-2016 TRD_RS00570 d39507197d06f9e3531b72543e4d281b 146 Pfam PF13279 Thioesterase-like superfamily 18 140 1.4E-14 T 22-04-2016 TRD_RS00570 d39507197d06f9e3531b72543e4d281b 146 PIRSF PIRSF003230 3 145 1.1E-24 T 22-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 TRD_RS08580 b24e48bd7f82209856b08adcacceedfc 245 PANTHER PTHR30348 3 240 5.1E-57 T 22-04-2016 TRD_RS08580 b24e48bd7f82209856b08adcacceedfc 245 SUPERFAMILY SSF117396 3 238 3.79E-64 T 22-04-2016 IPR002763 Protein of unknown function DUF72 TRD_RS08580 b24e48bd7f82209856b08adcacceedfc 245 Gene3D G3DSA:3.20.20.410 3 238 1.5E-62 T 22-04-2016 IPR002763 Protein of unknown function DUF72 TRD_RS08580 b24e48bd7f82209856b08adcacceedfc 245 Pfam PF01904 Protein of unknown function DUF72 19 235 1.0E-50 T 22-04-2016 IPR002763 Protein of unknown function DUF72 TRD_RS00735 3e84bfdbb32cbfdbae31c1b9d74c3351 67 Pfam PF11127 Protein of unknown function (DUF2892) 5 56 5.6E-12 T 22-04-2016 IPR021309 Protein of unknown function DUF2892 TRD_RS05555 09689f5dcf120a20b0b20e0752573867 141 Gene3D G3DSA:1.10.1660.10 10 92 4.4E-22 T 22-04-2016 TRD_RS05555 09689f5dcf120a20b0b20e0752573867 141 PANTHER PTHR30204 2 97 1.4E-15 T 22-04-2016 TRD_RS05555 09689f5dcf120a20b0b20e0752573867 141 PANTHER PTHR30204:SF1 2 97 1.4E-15 T 22-04-2016 TRD_RS05555 09689f5dcf120a20b0b20e0752573867 141 SUPERFAMILY SSF46955 10 77 6.87E-19 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS05555 09689f5dcf120a20b0b20e0752573867 141 SMART SM00422 10 78 9.7E-17 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS05555 09689f5dcf120a20b0b20e0752573867 141 Pfam PF13411 MerR HTH family regulatory protein 11 77 4.1E-19 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 SUPERFAMILY SSF52954 408 466 1.86E-5 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 Pfam PF13393 Histidyl-tRNA synthetase 239 397 9.5E-18 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 Pfam PF13393 Histidyl-tRNA synthetase 18 196 5.0E-34 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 PANTHER PTHR11476:SF5 255 480 4.8E-86 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 PANTHER PTHR11476:SF5 13 198 4.8E-86 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 PANTHER PTHR11476 255 480 4.8E-86 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 PANTHER PTHR11476 13 198 4.8E-86 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 Gene3D G3DSA:3.40.50.800 409 466 7.4E-6 T 22-04-2016 IPR004154 Anticodon-binding TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 Gene3D G3DSA:3.30.930.10 15 208 5.6E-69 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 Gene3D G3DSA:3.30.930.10 314 400 5.6E-69 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 SUPERFAMILY SSF55681 14 194 3.45E-66 T 22-04-2016 TRD_RS02915 f3a2edec815c39e90f4efdd79427a5cb 480 SUPERFAMILY SSF55681 273 399 3.45E-66 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 PANTHER PTHR32089 216 303 7.4E-58 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 PANTHER PTHR32089 332 483 7.4E-58 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 PANTHER PTHR32089 22 151 7.4E-58 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 PANTHER PTHR32089 512 596 7.4E-58 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 PANTHER PTHR32089 167 195 7.4E-58 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 SUPERFAMILY SSF58104 278 545 4.91E-48 T 22-04-2016 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 SMART SM00283 290 572 9.3E-29 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 458 2.5E-26 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 Pfam PF00672 HAMP domain 127 214 2.8E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 TRD_RS00480 db40bb57caea29d2a9b81280ae7bf74c 648 Gene3D G3DSA:1.10.287.950 305 513 1.5E-39 T 22-04-2016 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 Pfam PF08281 Sigma-70, region 4 134 182 1.3E-15 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 Gene3D G3DSA:1.10.1740.10 8 114 9.9E-33 T 22-04-2016 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 Gene3D G3DSA:1.10.10.10 125 190 1.7E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 SUPERFAMILY SSF88946 8 105 1.29E-28 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 SUPERFAMILY SSF88659 109 190 9.16E-16 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 Pfam PF04542 Sigma-70 region 2 30 97 2.9E-18 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 PANTHER PTHR30173 1 192 5.8E-49 T 22-04-2016 TRD_RS04845 be4f6f21a069dacd38f084202112b585 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 186 2.9E-30 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS03870 49bcb2424693d0951786a15bd5f68ca5 378 Pfam PF13439 Glycosyltransferase Family 4 16 171 1.0E-18 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS03870 49bcb2424693d0951786a15bd5f68ca5 378 Gene3D G3DSA:3.40.50.2000 158 347 1.0E-22 T 22-04-2016 TRD_RS03870 49bcb2424693d0951786a15bd5f68ca5 378 PANTHER PTHR12526 2 373 3.0E-56 T 22-04-2016 TRD_RS03870 49bcb2424693d0951786a15bd5f68ca5 378 Pfam PF00534 Glycosyl transferases group 1 194 348 1.5E-27 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS03870 49bcb2424693d0951786a15bd5f68ca5 378 SUPERFAMILY SSF53756 7 371 1.7E-75 T 22-04-2016 TRD_RS05265 35c66703fe5ad1ced4a0d5398178db0c 164 PANTHER PTHR34582 11 162 8.6E-22 T 22-04-2016 TRD_RS05265 35c66703fe5ad1ced4a0d5398178db0c 164 Pfam PF04239 Protein of unknown function (DUF421) 93 156 1.6E-8 T 22-04-2016 IPR007353 Protein of unknown function DUF421 TRD_RS05265 35c66703fe5ad1ced4a0d5398178db0c 164 Gene3D G3DSA:3.30.240.20 84 155 7.0E-15 T 22-04-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain TRD_RS05265 35c66703fe5ad1ced4a0d5398178db0c 164 PANTHER PTHR34582:SF4 11 162 8.6E-22 T 22-04-2016 TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 PANTHER PTHR10151 174 250 4.3E-12 T 22-04-2016 IPR024873 Ectonucleotide pyrophosphatase/phosphodiesterase family TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 PANTHER PTHR10151 4 137 4.3E-12 T 22-04-2016 IPR024873 Ectonucleotide pyrophosphatase/phosphodiesterase family TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 Gene3D G3DSA:3.40.720.10 4 254 4.5E-39 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 SUPERFAMILY SSF53649 4 423 1.16E-43 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 PANTHER PTHR10151:SF73 174 250 4.3E-12 T 22-04-2016 TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 PANTHER PTHR10151:SF73 4 137 4.3E-12 T 22-04-2016 TRD_RS08585 efc1bb3217a1e2f2ec1dabe136b8047e 486 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 6 268 4.4E-34 T 22-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 TRD_RS08125 f603cd1949c369e4c3278086aa0a1802 698 Pfam PF16075 Domain of unknown function (DUF4815) 132 214 1.6E-10 T 22-04-2016 IPR032096 Domain of unknown function DUF4815 TRD_RS07375 d96fdcce82b1f34d315f5b5583165e31 231 SUPERFAMILY SSF89392 52 225 1.02E-5 T 22-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX TRD_RS03240 60d6be0e254c256770e053955d2d5669 105 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 18 88 1.9E-11 T 22-04-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 TRD_RS03240 60d6be0e254c256770e053955d2d5669 105 TIGRFAM TIGR02229 caa3_sub_IV: caa(3)-type oxidase, subunit IV 14 89 3.9E-11 T 22-04-2016 IPR011743 Caa(3)-type oxidase, subunit IV TRD_RS07835 8872e1eefeb9a0c0e24d53a6cf3df479 292 Gene3D G3DSA:1.10.3720.10 78 284 1.3E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07835 8872e1eefeb9a0c0e24d53a6cf3df479 292 PANTHER PTHR30465:SF10 1 288 3.9E-89 T 22-04-2016 TRD_RS07835 8872e1eefeb9a0c0e24d53a6cf3df479 292 PANTHER PTHR30465 1 288 3.9E-89 T 22-04-2016 TRD_RS07835 8872e1eefeb9a0c0e24d53a6cf3df479 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 287 7.0E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07835 8872e1eefeb9a0c0e24d53a6cf3df479 292 SUPERFAMILY SSF161098 81 275 1.42E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 Gene3D G3DSA:3.30.1330.40 4 119 2.6E-48 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 PANTHER PTHR21164 1 127 9.6E-47 T 22-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 5 118 3.9E-42 T 22-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 SUPERFAMILY SSF55298 3 119 3.06E-43 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 PANTHER PTHR21164:SF0 1 127 9.6E-47 T 22-04-2016 TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 10 119 4.0E-33 T 22-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 PIRSF PIRSF005965 2 124 3.1E-44 T 22-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 TRD_RS00525 8b6582203e7fd8d52a6b32eae6765733 138 Pfam PF07736 Chorismate mutase type I 4 118 7.1E-46 T 22-04-2016 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 TRD_RS07210 0700bb29327eab7e6177914d1c4d7814 263 PANTHER PTHR34136 4 263 5.3E-81 T 22-04-2016 TRD_RS07210 0700bb29327eab7e6177914d1c4d7814 263 PANTHER PTHR34136:SF1 4 263 5.3E-81 T 22-04-2016 TRD_RS07210 0700bb29327eab7e6177914d1c4d7814 263 Gene3D G3DSA:3.20.20.70 89 198 3.0E-4 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS07210 0700bb29327eab7e6177914d1c4d7814 263 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 68 232 1.1E-49 T 22-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 TRD_RS07210 0700bb29327eab7e6177914d1c4d7814 263 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 64 238 8.7E-40 T 22-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 471 201.232 T 22-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 PANTHER PTHR32328:SF0 9 472 5.2E-175 T 22-04-2016 TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 PANTHER PTHR32328 9 472 5.2E-175 T 22-04-2016 TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 SUPERFAMILY SSF53383 76 469 8.31E-47 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 16 466 3.5E-165 T 22-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 Pfam PF03841 L-seryl-tRNA selenium transferase 86 453 4.4E-138 T 22-04-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 TRD_RS01940 4d8acd00f75e3254a7ca6e59ff46fce7 472 Gene3D G3DSA:3.40.640.10 80 324 8.6E-34 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 TRD_RS06615 8b6a650bdd2c91511dceb167768ad048 447 PANTHER PTHR30483 70 445 3.9E-43 T 22-04-2016 TRD_RS06615 8b6a650bdd2c91511dceb167768ad048 447 Gene3D G3DSA:3.40.50.2300 69 200 9.5E-32 T 22-04-2016 TRD_RS06615 8b6a650bdd2c91511dceb167768ad048 447 Gene3D G3DSA:3.40.50.2300 352 404 9.5E-32 T 22-04-2016 TRD_RS06615 8b6a650bdd2c91511dceb167768ad048 447 Gene3D G3DSA:3.40.50.2300 208 351 4.8E-15 T 22-04-2016 TRD_RS06615 8b6a650bdd2c91511dceb167768ad048 447 SUPERFAMILY SSF53822 72 438 1.91E-58 T 22-04-2016 IPR028082 Periplasmic binding protein-like I TRD_RS06615 8b6a650bdd2c91511dceb167768ad048 447 Pfam PF13458 Periplasmic binding protein 72 420 1.2E-48 T 22-04-2016 IPR028081 Leucine-binding protein domain TRD_RS05995 381d2a341a8cc7c8f318596b393b4b9a 273 PANTHER PTHR30465 1 272 6.9E-121 T 22-04-2016 TRD_RS05995 381d2a341a8cc7c8f318596b393b4b9a 273 SUPERFAMILY SSF161098 65 271 5.1E-32 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05995 381d2a341a8cc7c8f318596b393b4b9a 273 Gene3D G3DSA:1.10.3720.10 60 268 6.1E-34 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05995 381d2a341a8cc7c8f318596b393b4b9a 273 PANTHER PTHR30465:SF10 1 272 6.9E-121 T 22-04-2016 TRD_RS05995 381d2a341a8cc7c8f318596b393b4b9a 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 272 1.2E-36 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS04365 8de689f44a383bef423757e3b1b2ccfa 285 Gene3D G3DSA:3.20.20.150 5 262 2.1E-27 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS04365 8de689f44a383bef423757e3b1b2ccfa 285 PANTHER PTHR12110 1 279 5.0E-21 T 22-04-2016 TRD_RS04365 8de689f44a383bef423757e3b1b2ccfa 285 SUPERFAMILY SSF51658 6 241 1.93E-34 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS04365 8de689f44a383bef423757e3b1b2ccfa 285 Pfam PF01261 Xylose isomerase-like TIM barrel 19 215 3.6E-16 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 SUPERFAMILY SSF52317 28 242 3.21E-45 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 Gene3D G3DSA:3.40.50.880 2 245 4.7E-56 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 Pfam PF07722 Peptidase C26 4 220 1.3E-68 T 22-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 PANTHER PTHR11922 30 68 9.6E-62 T 22-04-2016 TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 PANTHER PTHR11922 84 244 9.6E-62 T 22-04-2016 TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 PANTHER PTHR11922:SF18 30 68 9.6E-62 T 22-04-2016 TRD_RS04700 12c9f798cc49db64499c084b7932f808 258 PANTHER PTHR11922:SF18 84 244 9.6E-62 T 22-04-2016 TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 Gene3D G3DSA:1.10.1660.10 9 112 1.3E-20 T 22-04-2016 TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 PANTHER PTHR30204:SF8 1 86 9.9E-30 T 22-04-2016 TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 Pfam PF13411 MerR HTH family regulatory protein 8 74 2.9E-18 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 SUPERFAMILY SSF46955 8 112 1.65E-18 T 22-04-2016 IPR009061 Putative DNA-binding domain TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 PANTHER PTHR30204 1 86 9.9E-30 T 22-04-2016 TRD_RS02040 11f5de7ade1b152013265a3a47f5a2cc 118 SMART SM00422 8 77 1.8E-20 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 TRD_RS04005 fa5aef93baca98d1fdbfabe59fd8d139 127 Gene3D G3DSA:3.30.1330.40 3 125 6.2E-54 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like TRD_RS04005 fa5aef93baca98d1fdbfabe59fd8d139 127 Pfam PF01042 Endoribonuclease L-PSP 10 126 5.1E-43 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family TRD_RS04005 fa5aef93baca98d1fdbfabe59fd8d139 127 SUPERFAMILY SSF55298 2 126 1.88E-50 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like TRD_RS04005 fa5aef93baca98d1fdbfabe59fd8d139 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 125 6.0E-50 T 22-04-2016 IPR006056 RidA family TRD_RS04005 fa5aef93baca98d1fdbfabe59fd8d139 127 PANTHER PTHR11803 1 126 2.5E-60 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family TRD_RS09005 6484e044967e5c306d32ddff7f3455b8 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 4 145 2.1E-9 T 22-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 TRD_RS00985 735dd30e4796d11a3b7a14f7dada3822 328 Gene3D G3DSA:3.40.630.30 55 132 5.2E-5 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS00985 735dd30e4796d11a3b7a14f7dada3822 328 SUPERFAMILY SSF55729 55 236 2.9E-11 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase TRD_RS08185 eddaa240aab2c82e82eff3e818f6ab81 141 Gene3D G3DSA:3.90.80.10 1 123 2.2E-21 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 TRD_RS08185 eddaa240aab2c82e82eff3e818f6ab81 141 Pfam PF00719 Inorganic pyrophosphatase 1 123 2.4E-22 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 TRD_RS08185 eddaa240aab2c82e82eff3e818f6ab81 141 PANTHER PTHR10286 34 118 4.7E-18 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 TRD_RS08185 eddaa240aab2c82e82eff3e818f6ab81 141 PANTHER PTHR10286:SF0 34 118 4.7E-18 T 22-04-2016 TRD_RS08185 eddaa240aab2c82e82eff3e818f6ab81 141 SUPERFAMILY SSF50324 1 138 6.15E-28 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 TRD_RS08655 02a0e3fe40440d4af46ed6b364d88bce 84 Pfam PF02325 YGGT family 10 79 2.7E-21 T 22-04-2016 IPR003425 CCB3/YggT GO:0016020 TRD_RS08655 02a0e3fe40440d4af46ed6b364d88bce 84 PANTHER PTHR33219:SF5 1 81 2.0E-20 T 22-04-2016 TRD_RS08655 02a0e3fe40440d4af46ed6b364d88bce 84 PANTHER PTHR33219 1 81 2.0E-20 T 22-04-2016 TRD_RS04075 7170e06e797ab4cae14900a22a4796e1 430 Gene3D G3DSA:1.20.1250.20 21 211 2.0E-19 T 22-04-2016 TRD_RS04075 7170e06e797ab4cae14900a22a4796e1 430 Gene3D G3DSA:1.20.1250.20 236 413 1.3E-18 T 22-04-2016 TRD_RS04075 7170e06e797ab4cae14900a22a4796e1 430 SUPERFAMILY SSF103473 19 413 4.05E-41 T 22-04-2016 IPR020846 Major facilitator superfamily domain TRD_RS04075 7170e06e797ab4cae14900a22a4796e1 430 Pfam PF07690 Major Facilitator Superfamily 27 339 2.3E-16 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 TRD_RS04075 7170e06e797ab4cae14900a22a4796e1 430 PANTHER PTHR23520 1 427 4.6E-25 T 22-04-2016 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 Pfam PF00311 Phosphoenolpyruvate carboxylase 153 928 1.6E-238 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 SUPERFAMILY SSF51621 25 928 3.45E-262 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 757 783 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 620 649 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 269 284 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 413 433 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 154 167 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 578 598 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 207 223 1.8E-54 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 Gene3D G3DSA:1.20.1440.90 299 416 2.1E-21 T 22-04-2016 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 580 592 - T 22-04-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 17 928 16.938 T 22-04-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PANTHER PTHR30523:SF0 24 928 6.5E-281 T 22-04-2016 TRD_RS04900 79bfd5c1a3599873729defa2d514ebe4 928 PANTHER PTHR30523 24 928 6.5E-281 T 22-04-2016 TRD_RS08310 9a884110ca544af1d963e50553c3b6e0 101 PANTHER PTHR11058 1 100 2.0E-43 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 TRD_RS08310 9a884110ca544af1d963e50553c3b6e0 101 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 4 100 5.2E-35 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 TRD_RS08310 9a884110ca544af1d963e50553c3b6e0 101 PANTHER PTHR11058:SF5 1 100 2.0E-43 T 22-04-2016 TRD_RS01095 e7db9c2ab330aa11a4870b186556f57d 438 Pfam PF13487 HD domain 308 369 9.3E-20 T 22-04-2016 TRD_RS01095 e7db9c2ab330aa11a4870b186556f57d 438 SMART SM00471 252 388 3.9E-12 T 22-04-2016 IPR003607 HD/PDEase domain TRD_RS01095 e7db9c2ab330aa11a4870b186556f57d 438 SUPERFAMILY SSF109604 248 417 1.07E-40 T 22-04-2016 TRD_RS01095 e7db9c2ab330aa11a4870b186556f57d 438 Gene3D G3DSA:1.10.3210.10 251 418 8.4E-26 T 22-04-2016 IPR006674 HD domain TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PANTHER PTHR24322 154 185 5.9E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PANTHER PTHR24322 10 138 5.9E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 Pfam PF00106 short chain dehydrogenase 7 195 8.6E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.6E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.6E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.6E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.6E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.6E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 220 2.6E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PANTHER PTHR24322:SF513 154 185 5.9E-30 T 22-04-2016 TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 PANTHER PTHR24322:SF513 10 138 5.9E-30 T 22-04-2016 TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 Gene3D G3DSA:3.40.50.720 7 235 1.0E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08905 7f35e00d38813034ab9d128d38c38460 236 SUPERFAMILY SSF51735 7 235 1.99E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 38 146 8.4E-24 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 SUPERFAMILY SSF56770 10 155 3.92E-62 T 22-04-2016 TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 12 151 5.8E-68 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 PANTHER PTHR11995:SF14 11 175 3.1E-86 T 22-04-2016 TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 Gene3D G3DSA:3.40.50.700 23 149 3.5E-32 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 152 41.259 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 TRD_RS08315 b0752c733a27d05e51f50cf43cb87448 185 PANTHER PTHR11995 11 175 3.1E-86 T 22-04-2016 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 Gene3D G3DSA:2.40.10.10 189 279 3.7E-9 T 22-04-2016 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 SUPERFAMILY SSF50494 44 279 5.71E-26 T 22-04-2016 IPR009003 Peptidase S1, PA clan TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 Pfam PF00089 Trypsin 92 262 1.5E-8 T 22-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 235 247 5.1E-5 T 22-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 163 177 5.1E-5 T 22-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 96 111 5.1E-5 T 22-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 Gene3D G3DSA:2.40.10.10 90 188 1.6E-15 T 22-04-2016 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 PANTHER PTHR15462 54 292 1.8E-28 T 22-04-2016 TRD_RS08900 9ba7c65e55e8038b41d204f8ad8e9dd7 564 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 106 111 - T 22-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 PANTHER PTHR11921:SF22 40 427 2.6E-121 T 22-04-2016 TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 Pfam PF02754 Cysteine-rich domain 308 393 4.9E-13 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 Pfam PF02754 Cysteine-rich domain 185 264 2.9E-7 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 Pfam PF13187 4Fe-4S dicluster domain 60 115 2.1E-9 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 Gene3D G3DSA:1.10.1060.10 40 131 2.4E-15 T 22-04-2016 TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 SUPERFAMILY SSF46548 35 130 8.2E-17 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 TRD_RS00725 119e41258badbd8d94f9b3cf549e979e 433 PANTHER PTHR11921 40 427 2.6E-121 T 22-04-2016 TRD_RS06775 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 Gene3D G3DSA:3.40.30.10 172 175 1.3E-28 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS06775 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 Gene3D G3DSA:3.40.30.10 3 139 1.3E-28 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS06775 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 Pfam PF14595 Thioredoxin 12 134 8.0E-32 T 22-04-2016 TRD_RS06775 c0bbe9d39ca6fe1fab5f0d13dc2bfa00 200 SUPERFAMILY SSF52833 46 142 4.9E-9 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 SUPERFAMILY SSF103025 21 256 2.51E-50 T 22-04-2016 TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 SUPERFAMILY SSF103025 292 330 2.51E-50 T 22-04-2016 TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 316 423 2.8E-7 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 Pfam PF01571 Aminomethyltransferase folate-binding domain 30 255 1.4E-39 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 Gene3D G3DSA:3.30.70.1400 63 136 1.1E-8 T 22-04-2016 TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 Gene3D G3DSA:3.30.1360.120 36 62 2.3E-20 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 TRD_RS04135 81dd62e2979ef7ae30c703216f187fcb 470 Gene3D G3DSA:3.30.1360.120 159 252 2.3E-20 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 SUPERFAMILY SSF111352 4 378 1.96E-119 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 PANTHER PTHR11730:SF17 1 397 1.3E-169 T 22-04-2016 TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 Gene3D G3DSA:1.10.3430.10 2 378 3.1E-128 T 22-04-2016 IPR029020 Ammonium/urea transporter TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 ProSitePatterns PS01219 Ammonium transporters signature. 154 179 - T 22-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 PANTHER PTHR11730 1 397 1.3E-169 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 Pfam PF00909 Ammonium Transporter Family 7 397 2.1E-116 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 TRD_RS05140 52aaea21af9fdc45fb5dd0a1a5e5efd2 430 TIGRFAM TIGR00836 amt: ammonium transporter 6 397 7.0E-129 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 TRD_RS08730 6901cabeca503c68c90a3c961bdd37d7 87 SUPERFAMILY SSF159127 29 85 6.8E-10 T 22-04-2016 TRD_RS08730 6901cabeca503c68c90a3c961bdd37d7 87 Pfam PF01455 HupF/HypC family 29 85 2.3E-10 T 22-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC TRD_RS04645 c212cd0b0dd7271cee0e313c2308d32e 323 Pfam PF00482 Type II secretion system (T2SS), protein F 158 281 3.5E-21 T 22-04-2016 IPR018076 Type II secretion system F domain TRD_RS04645 c212cd0b0dd7271cee0e313c2308d32e 323 PANTHER PTHR35007 5 323 4.6E-63 T 22-04-2016 TRD_RS04645 c212cd0b0dd7271cee0e313c2308d32e 323 PANTHER PTHR35007:SF1 5 323 4.6E-63 T 22-04-2016 TRD_RS09180 ef0f3d0b1b84f61745a09c8a81e93ee9 395 SUPERFAMILY SSF53756 2 368 9.07E-85 T 22-04-2016 TRD_RS09180 ef0f3d0b1b84f61745a09c8a81e93ee9 395 PANTHER PTHR12526 1 368 2.5E-70 T 22-04-2016 TRD_RS09180 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Gene3D G3DSA:3.40.50.2000 187 346 6.9E-30 T 22-04-2016 TRD_RS09180 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Pfam PF13439 Glycosyltransferase Family 4 14 176 2.9E-22 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain TRD_RS09180 ef0f3d0b1b84f61745a09c8a81e93ee9 395 Pfam PF00534 Glycosyl transferases group 1 188 346 3.3E-39 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS02630 fe6dab7a4e662afcbb409192f9461c22 256 Gene3D G3DSA:1.10.10.10 182 246 1.6E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02630 fe6dab7a4e662afcbb409192f9461c22 256 SUPERFAMILY SSF88659 165 247 3.92E-10 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 Pfam PF00589 Phage integrase family 148 297 1.4E-11 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 50 121 3.1E-10 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 SUPERFAMILY SSF56349 49 293 4.41E-35 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 PANTHER PTHR30349 50 315 5.6E-22 T 22-04-2016 TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 Gene3D G3DSA:1.10.443.10 144 296 1.4E-21 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 Gene3D G3DSA:1.10.150.130 50 132 1.4E-9 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal TRD_RS06245 401c1fd7abcc54206afbf5132c843c63 326 PANTHER PTHR30349:SF5 50 315 5.6E-22 T 22-04-2016 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 SMART SM00411 1 90 9.8E-34 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 3.6E-32 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 SUPERFAMILY SSF47729 1 90 7.65E-30 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 PANTHER PTHR33175 1 91 1.1E-35 T 22-04-2016 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 6.9E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 6.9E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 6.9E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 TRD_RS03810 b4b696ed9c16ceb7379e6846480f11fa 92 Gene3D G3DSA:4.10.520.10 1 90 9.0E-33 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 TRD_RS06560 615524b15032518607fec462d40c3c4f 326 Gene3D G3DSA:3.10.180.10 153 291 2.9E-35 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS06560 615524b15032518607fec462d40c3c4f 326 Gene3D G3DSA:3.10.180.10 7 128 2.2E-32 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS06560 615524b15032518607fec462d40c3c4f 326 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 249 270 - T 22-04-2016 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 TRD_RS06560 615524b15032518607fec462d40c3c4f 326 PANTHER PTHR21366 196 319 3.5E-79 T 22-04-2016 TRD_RS06560 615524b15032518607fec462d40c3c4f 326 PANTHER PTHR21366 9 79 3.5E-79 T 22-04-2016 TRD_RS06560 615524b15032518607fec462d40c3c4f 326 PANTHER PTHR21366:SF10 196 319 3.5E-79 T 22-04-2016 TRD_RS06560 615524b15032518607fec462d40c3c4f 326 PANTHER PTHR21366:SF10 9 79 3.5E-79 T 22-04-2016 TRD_RS06560 615524b15032518607fec462d40c3c4f 326 SUPERFAMILY SSF54593 10 272 1.43E-41 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase TRD_RS06560 615524b15032518607fec462d40c3c4f 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 153 271 6.4E-11 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS06560 615524b15032518607fec462d40c3c4f 326 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 120 1.6E-8 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain TRD_RS06360 eb33834d2eff06ed7b5e31f43a3b31e8 269 Pfam PF13354 Beta-lactamase enzyme family 24 228 1.7E-52 T 22-04-2016 TRD_RS06360 eb33834d2eff06ed7b5e31f43a3b31e8 269 Gene3D G3DSA:3.40.710.10 2 257 2.0E-60 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS06360 eb33834d2eff06ed7b5e31f43a3b31e8 269 SUPERFAMILY SSF56601 1 254 2.41E-49 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS06360 eb33834d2eff06ed7b5e31f43a3b31e8 269 PANTHER PTHR35333 1 264 1.1E-42 T 22-04-2016 TRD_RS09025 ecd65a17ed0538c9c8889eb281c3bbc4 664 PANTHER PTHR32438 19 633 4.6E-63 T 22-04-2016 TRD_RS09025 ecd65a17ed0538c9c8889eb281c3bbc4 664 PANTHER PTHR32438:SF5 19 633 4.6E-63 T 22-04-2016 TRD_RS09025 ecd65a17ed0538c9c8889eb281c3bbc4 664 SUPERFAMILY SSF51445 180 648 5.38E-94 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS09025 ecd65a17ed0538c9c8889eb281c3bbc4 664 Pfam PF02446 4-alpha-glucanotransferase 187 633 7.3E-78 T 22-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 TRD_RS09025 ecd65a17ed0538c9c8889eb281c3bbc4 664 Gene3D G3DSA:3.20.20.80 179 639 3.3E-100 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 116 122 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 Gene3D G3DSA:3.40.50.150 1 182 4.4E-55 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 Pfam PF03602 Conserved hypothetical protein 95 1 179 4.7E-46 T 22-04-2016 TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 PANTHER PTHR18895 1 192 2.6E-41 T 22-04-2016 TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 PIRSF PIRSF004553 1 183 2.6E-44 T 22-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 PANTHER PTHR18895:SF60 1 192 2.6E-41 T 22-04-2016 TRD_RS00460 c532835b17c3b06b4c5ed42ba4bd63a2 195 SUPERFAMILY SSF53335 1 180 2.67E-43 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS00020 79b26a62c07247ae7360850b6387bf06 774 SUPERFAMILY SSF63829 505 749 2.68E-6 T 22-04-2016 TRD_RS00020 79b26a62c07247ae7360850b6387bf06 774 Gene3D G3DSA:2.120.10.30 692 765 5.5E-6 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS00020 79b26a62c07247ae7360850b6387bf06 774 SUPERFAMILY SSF81606 35 214 3.53E-7 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS00020 79b26a62c07247ae7360850b6387bf06 774 Gene3D G3DSA:3.60.40.10 56 167 9.4E-4 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 TRD_RS09980 e08946c45c34051b73a7ff51f14fb02c 155 SUPERFAMILY SSF49265 84 155 5.52E-12 T 22-04-2016 IPR003961 Fibronectin type III GO:0005515 TRD_RS09980 e08946c45c34051b73a7ff51f14fb02c 155 Gene3D G3DSA:2.60.40.10 86 155 3.2E-14 T 22-04-2016 IPR013783 Immunoglobulin-like fold TRD_RS07220 3ea20788ff4584fec6298ef8dbdf7308 339 Gene3D G3DSA:3.40.1190.20 16 328 1.4E-49 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS07220 3ea20788ff4584fec6298ef8dbdf7308 339 Pfam PF00294 pfkB family carbohydrate kinase 22 316 4.1E-34 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB TRD_RS07220 3ea20788ff4584fec6298ef8dbdf7308 339 SUPERFAMILY SSF53613 17 326 7.17E-45 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS07220 3ea20788ff4584fec6298ef8dbdf7308 339 PANTHER PTHR10584:SF159 1 328 8.5E-75 T 22-04-2016 TRD_RS07220 3ea20788ff4584fec6298ef8dbdf7308 339 PANTHER PTHR10584 1 328 8.5E-75 T 22-04-2016 TRD_RS02145 c17ee73623a8636dd24c1e1ff18825be 457 PANTHER PTHR34856 17 434 1.6E-96 T 22-04-2016 TRD_RS02145 c17ee73623a8636dd24c1e1ff18825be 457 Pfam PF03916 Polysulphide reductase, NrfD 55 385 4.6E-20 T 22-04-2016 IPR005614 NrfD family TRD_RS02145 c17ee73623a8636dd24c1e1ff18825be 457 PANTHER PTHR34856:SF1 17 434 1.6E-96 T 22-04-2016 TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 77 3.5E-11 T 22-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 PANTHER PTHR34405 1 81 2.2E-26 T 22-04-2016 TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 SUPERFAMILY SSF143430 1 78 4.84E-25 T 22-04-2016 TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 Gene3D G3DSA:3.30.70.240 1 65 1.3E-27 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 Pfam PF09827 CRISPR associated protein Cas2 1 72 1.3E-20 T 22-04-2016 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 87 15.549 T 22-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 TRD_RS00110 ae28a926bb3b7d829f3c1f6671cabb3f 87 PANTHER PTHR34405:SF2 1 81 2.2E-26 T 22-04-2016 TRD_RS05240 f1e685799a28f85a11a8084e425518fc 287 Pfam PF01066 CDP-alcohol phosphatidyltransferase 55 112 7.8E-7 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 TRD_RS05240 f1e685799a28f85a11a8084e425518fc 287 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 93 115 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 SUPERFAMILY SSF53335 7 257 2.69E-42 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 Gene3D G3DSA:3.40.50.150 6 257 4.7E-34 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 PANTHER PTHR10108:SF705 6 16 7.3E-23 T 22-04-2016 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 PANTHER PTHR10108:SF705 34 175 7.3E-23 T 22-04-2016 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 PANTHER PTHR10108:SF705 216 269 7.3E-23 T 22-04-2016 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 PANTHER PTHR10108 6 16 7.3E-23 T 22-04-2016 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 PANTHER PTHR10108 34 175 7.3E-23 T 22-04-2016 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 PANTHER PTHR10108 216 269 7.3E-23 T 22-04-2016 TRD_RS01140 aa00524ba3d3f5110cdfed931575c456 269 Pfam PF13649 Methyltransferase domain 40 138 4.1E-21 T 22-04-2016 TRD_RS06175 585e0e0882e55fcc2afe06d64c02f681 387 SUPERFAMILY SSF81442 89 378 6.93E-33 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS06175 585e0e0882e55fcc2afe06d64c02f681 387 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 84 341 1.8E-29 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS06175 585e0e0882e55fcc2afe06d64c02f681 387 Gene3D G3DSA:1.20.210.10 87 376 3.9E-21 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 9 422 3.7E-147 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 PANTHER PTHR21090 8 421 9.5E-151 T 22-04-2016 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 17 414 2.6E-89 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 Gene3D G3DSA:3.65.10.10 27 225 4.1E-59 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 SUPERFAMILY SSF55205 9 423 1.18E-121 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 PANTHER PTHR21090:SF19 8 421 9.5E-151 T 22-04-2016 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 7 424 39.308 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 TRD_RS05725 84a9ceaedd9134f5266966a6a80d54b9 424 Gene3D G3DSA:3.65.10.10 226 422 2.5E-53 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 TRD_RS07340 839ae4674bc5aba2812f4b7ec9f4183b 343 PANTHER PTHR10953:SF156 8 275 8.1E-99 T 22-04-2016 TRD_RS07340 839ae4674bc5aba2812f4b7ec9f4183b 343 Gene3D G3DSA:3.40.50.720 3 249 5.4E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS07340 839ae4674bc5aba2812f4b7ec9f4183b 343 PANTHER PTHR10953 8 275 8.1E-99 T 22-04-2016 TRD_RS07340 839ae4674bc5aba2812f4b7ec9f4183b 343 Pfam PF00899 ThiF family 12 245 2.1E-59 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 TRD_RS07340 839ae4674bc5aba2812f4b7ec9f4183b 343 SUPERFAMILY SSF69572 3 330 9.16E-80 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 203 1.4E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 Gene3D G3DSA:3.40.50.2300 1 151 1.1E-39 T 22-04-2016 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 2.7E-7 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 2.7E-7 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 SUPERFAMILY SSF52172 1 128 7.97E-36 T 22-04-2016 IPR011006 CheY-like superfamily TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 PANTHER PTHR26402 1 209 4.4E-75 T 22-04-2016 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 SMART SM00421 145 203 8.3E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 PANTHER PTHR26402:SF151 1 209 4.4E-75 T 22-04-2016 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 Pfam PF00072 Response regulator receiver domain 4 113 4.3E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 SMART SM00448 1 113 1.6E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 Gene3D G3DSA:1.10.10.10 152 209 4.3E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07260 c60151adc9083668a2524c2e9b48abec 219 SUPERFAMILY SSF46894 140 209 7.14E-20 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 SMART SM00636 39 335 2.0E-25 T 22-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 Pfam PF00704 Glycosyl hydrolases family 18 58 333 1.5E-30 T 22-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 SUPERFAMILY SSF51445 40 250 5.38E-49 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 SUPERFAMILY SSF51445 307 341 5.38E-49 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 PANTHER PTHR11177:SF196 114 333 2.2E-49 T 22-04-2016 TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 PANTHER PTHR11177 114 333 2.2E-49 T 22-04-2016 TRD_RS07940 ba759598dbf2714b8a148fe0f306fbe6 557 Gene3D G3DSA:3.20.20.80 38 337 9.8E-44 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS04145 a070aac168270fe9663ecd99a6269e8f 309 Gene3D G3DSA:3.20.20.140 162 303 1.2E-8 T 22-04-2016 TRD_RS04145 a070aac168270fe9663ecd99a6269e8f 309 SUPERFAMILY SSF51556 18 303 9.79E-33 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS04145 a070aac168270fe9663ecd99a6269e8f 309 PIRSF PIRSF021898 9 306 9.3E-58 T 22-04-2016 IPR016797 Uncharacterised conserved protein UCP021898 TRD_RS04040 d138fbb066329ce359a12012b8723e86 407 Pfam PF13416 Bacterial extracellular solute-binding protein 118 369 2.3E-34 T 22-04-2016 TRD_RS04040 d138fbb066329ce359a12012b8723e86 407 Gene3D G3DSA:3.40.190.10 99 198 1.4E-5 T 22-04-2016 TRD_RS04040 d138fbb066329ce359a12012b8723e86 407 Gene3D G3DSA:3.40.190.10 199 347 2.5E-33 T 22-04-2016 TRD_RS04040 d138fbb066329ce359a12012b8723e86 407 SUPERFAMILY SSF53850 84 405 2.99E-58 T 22-04-2016 TRD_RS04040 d138fbb066329ce359a12012b8723e86 407 PANTHER PTHR30222 86 404 1.6E-97 T 22-04-2016 TRD_RS04040 d138fbb066329ce359a12012b8723e86 407 PANTHER PTHR30222:SF2 86 404 1.6E-97 T 22-04-2016 TRD_RS03015 e10753974e4ac04c3ed34eb6e0fe0f2e 385 Gene3D G3DSA:3.40.50.2000 30 175 1.4E-25 T 22-04-2016 TRD_RS03015 e10753974e4ac04c3ed34eb6e0fe0f2e 385 Gene3D G3DSA:3.40.50.2000 218 381 7.8E-56 T 22-04-2016 TRD_RS03015 e10753974e4ac04c3ed34eb6e0fe0f2e 385 PANTHER PTHR30160:SF7 28 380 3.1E-47 T 22-04-2016 TRD_RS03015 e10753974e4ac04c3ed34eb6e0fe0f2e 385 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 118 340 1.1E-39 T 22-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 TRD_RS03015 e10753974e4ac04c3ed34eb6e0fe0f2e 385 PANTHER PTHR30160 28 380 3.1E-47 T 22-04-2016 TRD_RS03015 e10753974e4ac04c3ed34eb6e0fe0f2e 385 SUPERFAMILY SSF53756 30 380 9.42E-78 T 22-04-2016 TRD_RS06980 282557ff4fea68c6c34636d00d7703d0 337 Gene3D G3DSA:3.40.50.10330 11 53 1.9E-4 T 22-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS06980 282557ff4fea68c6c34636d00d7703d0 337 Gene3D G3DSA:3.40.50.10330 93 140 1.9E-4 T 22-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS06980 282557ff4fea68c6c34636d00d7703d0 337 SUPERFAMILY SSF111331 13 36 8.11E-8 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain TRD_RS06980 282557ff4fea68c6c34636d00d7703d0 337 SUPERFAMILY SSF111331 84 151 8.11E-8 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain TRD_RS06980 282557ff4fea68c6c34636d00d7703d0 337 Pfam PF01513 ATP-NAD kinase 14 161 3.3E-10 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 46 61 2.3E-11 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 2.3E-11 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 14 29 2.3E-11 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 Pfam PF01022 Bacterial regulatory protein, arsR family 19 63 3.4E-14 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 SMART SM00418 12 90 3.7E-26 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 PANTHER PTHR33154 3 102 2.3E-21 T 22-04-2016 TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 Gene3D G3DSA:1.10.10.10 4 94 2.6E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07145 ded1ecfab6d3063b0a2e4e63e6d6cb01 123 SUPERFAMILY SSF46785 11 94 4.77E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 Pfam PF13416 Bacterial extracellular solute-binding protein 93 358 2.6E-35 T 22-04-2016 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 Gene3D G3DSA:3.40.190.10 194 349 7.0E-45 T 22-04-2016 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 SUPERFAMILY SSF53850 77 401 9.83E-88 T 22-04-2016 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PANTHER PTHR30222:SF5 64 399 2.0E-95 T 22-04-2016 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 Gene3D G3DSA:3.40.190.10 78 193 1.7E-22 T 22-04-2016 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PANTHER PTHR30222 64 399 2.0E-95 T 22-04-2016 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PIRSF PIRSF019574 41 401 4.3E-113 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 255 274 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 173 189 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 83 99 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 299 318 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 142 155 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 346 372 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 140 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS02405 e0a4f99e319c41b0c24e1d0b726ba982 401 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 99 120 9.8E-46 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 TRD_RS12190 ec734653a6827ef2f6abfe3ddd4df747 152 Gene3D G3DSA:3.40.50.2000 2 140 3.1E-21 T 22-04-2016 TRD_RS12190 ec734653a6827ef2f6abfe3ddd4df747 152 SUPERFAMILY SSF53756 1 152 1.78E-45 T 22-04-2016 TRD_RS12190 ec734653a6827ef2f6abfe3ddd4df747 152 Pfam PF00534 Glycosyl transferases group 1 1 140 3.7E-27 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS12190 ec734653a6827ef2f6abfe3ddd4df747 152 PANTHER PTHR12526 1 152 7.2E-38 T 22-04-2016 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 PANTHER PTHR21098:SF0 1 206 1.5E-96 T 22-04-2016 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 SUPERFAMILY SSF63380 93 194 4.85E-27 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 196 1.3E-61 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 Pfam PF00677 Lumazine binding domain 100 184 2.8E-18 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 Pfam PF00677 Lumazine binding domain 3 87 2.7E-21 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 Gene3D G3DSA:2.40.30.20 5 104 1.3E-30 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 Gene3D G3DSA:2.40.30.20 105 197 2.0E-24 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 PANTHER PTHR21098 1 206 1.5E-96 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 SUPERFAMILY SSF63380 1 88 1.45E-23 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 TRD_RS02320 cdf46cff000bd165b4a43833de3966b6 221 PIRSF PIRSF000498 1 207 2.6E-64 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 TRD_RS07255 02618e14699c9527f6f0e074dddd8dac 192 Pfam PF06168 Protein of unknown function (DUF981) 1 176 6.9E-44 T 22-04-2016 IPR009324 Protein of unknown function DUF981 TRD_RS01975 d6fdea4ec6970d91d8a49b11c54e48eb 421 PANTHER PTHR21015 7 365 1.2E-68 T 22-04-2016 TRD_RS01975 d6fdea4ec6970d91d8a49b11c54e48eb 421 Gene3D G3DSA:3.40.50.2000 213 370 7.5E-24 T 22-04-2016 TRD_RS01975 d6fdea4ec6970d91d8a49b11c54e48eb 421 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 58 204 8.7E-19 T 22-04-2016 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 TRD_RS01975 d6fdea4ec6970d91d8a49b11c54e48eb 421 Pfam PF00534 Glycosyl transferases group 1 270 338 5.0E-8 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 TRD_RS01975 d6fdea4ec6970d91d8a49b11c54e48eb 421 SUPERFAMILY SSF53756 108 343 2.72E-26 T 22-04-2016 TRD_RS01975 d6fdea4ec6970d91d8a49b11c54e48eb 421 PANTHER PTHR21015:SF21 7 365 1.2E-68 T 22-04-2016 TRD_RS01015 60c3b9025d033d8b8702bc32679a7c76 190 SUPERFAMILY SSF53271 2 182 3.02E-34 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS01015 60c3b9025d033d8b8702bc32679a7c76 190 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 2 181 1.6E-46 T 22-04-2016 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS01015 60c3b9025d033d8b8702bc32679a7c76 190 Pfam PF00156 Phosphoribosyl transferase domain 34 144 2.6E-18 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 TRD_RS01015 60c3b9025d033d8b8702bc32679a7c76 190 PANTHER PTHR19278 1 158 9.6E-29 T 22-04-2016 TRD_RS01015 60c3b9025d033d8b8702bc32679a7c76 190 Gene3D G3DSA:3.40.50.2020 2 180 9.9E-41 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like TRD_RS01015 60c3b9025d033d8b8702bc32679a7c76 190 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 190 21.704 T 22-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 TRD_RS00745 8e1fa2371fa89dfe9d0a9d93ece70d4e 405 PANTHER PTHR32479 32 389 5.5E-64 T 22-04-2016 TRD_RS00745 8e1fa2371fa89dfe9d0a9d93ece70d4e 405 Pfam PF02754 Cysteine-rich domain 218 315 3.6E-7 T 22-04-2016 IPR004017 Cysteine-rich domain TRD_RS00745 8e1fa2371fa89dfe9d0a9d93ece70d4e 405 PANTHER PTHR32479:SF12 32 389 5.5E-64 T 22-04-2016 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 Pfam PF01593 Flavin containing amine oxidoreductase 16 487 4.0E-16 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 Gene3D G3DSA:3.50.50.60 131 132 2.4E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 Gene3D G3DSA:3.50.50.60 206 308 2.4E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 Gene3D G3DSA:3.50.50.60 437 488 2.4E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 Gene3D G3DSA:3.50.50.60 6 59 2.4E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 SUPERFAMILY SSF51905 451 490 9.79E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 SUPERFAMILY SSF51905 4 330 9.79E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 PANTHER PTHR10668 9 490 7.8E-50 T 22-04-2016 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 9.7E-5 T 22-04-2016 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 391 407 9.7E-5 T 22-04-2016 TRD_RS06445 ce54bc6f2cf1d88263bb2323513ab050 517 PANTHER PTHR10668:SF4 9 490 7.8E-50 T 22-04-2016 TRD_RS03220 d1daf01d6616f96368310e7a363b9bd3 418 Pfam PF01882 Protein of unknown function DUF58 186 285 2.1E-22 T 22-04-2016 IPR002881 Domain of unknown function DUF58 TRD_RS03220 d1daf01d6616f96368310e7a363b9bd3 418 PANTHER PTHR34351:SF2 3 242 2.7E-82 T 22-04-2016 TRD_RS03220 d1daf01d6616f96368310e7a363b9bd3 418 PANTHER PTHR34351:SF2 258 406 2.7E-82 T 22-04-2016 TRD_RS03220 d1daf01d6616f96368310e7a363b9bd3 418 PANTHER PTHR34351 3 242 2.7E-82 T 22-04-2016 TRD_RS03220 d1daf01d6616f96368310e7a363b9bd3 418 PANTHER PTHR34351 258 406 2.7E-82 T 22-04-2016 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 239 5.0E-56 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 37.5 T 22-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 22-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 PANTHER PTHR21139 1 258 1.1E-110 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 Gene3D G3DSA:3.20.20.70 1 251 6.2E-97 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 Pfam PF00121 Triosephosphate isomerase 5 246 1.3E-84 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 TRD_RS03570 652e34a00298040b46be9817a006dd76 260 SUPERFAMILY SSF51351 1 250 3.27E-85 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 TRD_RS02225 3cc60db0968e8d7d3e0b3b73c9aa3d7a 117 PANTHER PTHR10160 2 94 2.3E-15 T 22-04-2016 TRD_RS02225 3cc60db0968e8d7d3e0b3b73c9aa3d7a 117 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 9 92 1.6E-28 T 22-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 TRD_RS08550 25879f6ee5b59a2f241ce228f06ab67a 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 306 3.2E-20 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08550 25879f6ee5b59a2f241ce228f06ab67a 311 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 25 306 5.8E-84 T 22-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 TRD_RS08550 25879f6ee5b59a2f241ce228f06ab67a 311 Gene3D G3DSA:1.10.3720.10 34 308 1.0E-44 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08550 25879f6ee5b59a2f241ce228f06ab67a 311 PANTHER PTHR30425 1 311 6.9E-128 T 22-04-2016 TRD_RS08550 25879f6ee5b59a2f241ce228f06ab67a 311 SUPERFAMILY SSF161098 28 303 6.82E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS08550 25879f6ee5b59a2f241ce228f06ab67a 311 PANTHER PTHR30425:SF3 1 311 6.9E-128 T 22-04-2016 TRD_RS03415 4c24792f1839799245578c965acfa75d 236 SMART SM01211 1 227 1.5E-127 T 22-04-2016 TRD_RS03415 4c24792f1839799245578c965acfa75d 236 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 210 1.5E-46 T 22-04-2016 TRD_RS03415 4c24792f1839799245578c965acfa75d 236 PANTHER PTHR10099 1 230 4.7E-113 T 22-04-2016 TRD_RS03415 4c24792f1839799245578c965acfa75d 236 SUPERFAMILY SSF52317 1 225 2.36E-77 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS03415 4c24792f1839799245578c965acfa75d 236 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 226 44.562 T 22-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03415 4c24792f1839799245578c965acfa75d 236 Gene3D G3DSA:3.40.50.880 1 225 3.5E-38 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS03415 4c24792f1839799245578c965acfa75d 236 PIRSF PIRSF001586 1 230 1.4E-84 T 22-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS03415 4c24792f1839799245578c965acfa75d 236 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 226 1.3E-95 T 22-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 TRD_RS06170 aebe8a1ee3b8a6efcd75cd8cee0ee312 183 Pfam PF06146 Phosphate-starvation-inducible E 64 130 2.3E-13 T 22-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like TRD_RS07660 3b0611d19465c26431fe6bae32e71352 413 Pfam PF13485 Peptidase MA superfamily 164 377 1.7E-32 T 22-04-2016 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 Pfam PF00005 ABC transporter 36 177 6.5E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 SUPERFAMILY SSF52540 20 258 4.06E-89 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 PANTHER PTHR24220:SF402 21 256 1.1E-144 T 22-04-2016 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 PANTHER PTHR24220:SF402 284 369 1.1E-144 T 22-04-2016 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 Gene3D G3DSA:3.40.50.300 20 250 8.3E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 SMART SM00382 44 227 3.4E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 SUPERFAMILY SSF50331 252 368 1.6E-18 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 Pfam PF08402 TOBE domain 293 368 1.1E-15 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 367 1.8E-121 T 22-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 PANTHER PTHR24220 21 256 1.1E-144 T 22-04-2016 TRD_RS04055 611eeab5864231b027fe9513b5f8da56 372 PANTHER PTHR24220 284 369 1.1E-144 T 22-04-2016 TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 Gene3D G3DSA:3.40.800.20 6 311 2.5E-114 T 22-04-2016 IPR023801 Histone deacetylase domain TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 Pfam PF00850 Histone deacetylase domain 22 310 4.6E-90 T 22-04-2016 IPR023801 Histone deacetylase domain TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 1.0E-16 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 PRINTS PR01270 Histone deacetylase superfamily signature 123 146 1.0E-16 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 PRINTS PR01270 Histone deacetylase superfamily signature 241 251 1.0E-16 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 SUPERFAMILY SSF52768 5 311 1.34E-113 T 22-04-2016 TRD_RS00865 a2e1b2ad9c6e91ba45179449844ebd48 319 PANTHER PTHR10625 21 311 3.8E-124 T 22-04-2016 IPR000286 Histone deacetylase superfamily TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Gene3D G3DSA:3.40.50.300 496 521 2.3E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Gene3D G3DSA:3.40.50.300 586 722 2.3E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 PANTHER PTHR30580 1 812 2.9E-216 T 22-04-2016 TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Gene3D G3DSA:2.20.25.10 533 557 1.4E-4 T 22-04-2016 TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 SUPERFAMILY SSF52540 220 432 3.37E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 SMART SM00490 581 678 0.0045 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Gene3D G3DSA:3.40.50.300 266 455 1.3E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Hamap MF_00983 Probable primosomal protein N' [priA]. 12 811 22.868 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 SMART SM00487 265 460 4.4E-26 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Pfam PF00270 DEAD/DEAH box helicase 270 433 8.1E-15 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 SUPERFAMILY SSF52540 584 726 1.52E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 SUPERFAMILY SSF52540 290 342 1.52E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 TIGRFAM TIGR00595 priA: primosomal protein N' 293 794 1.3E-169 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 TRD_RS07540 0d0a8eb9f456df362cc6fbb7e7161125 812 Pfam PF00271 Helicase conserved C-terminal domain 609 676 2.9E-6 T 22-04-2016 IPR001650 Helicase, C-terminal TRD_RS03360 54ef1ee3c26a58b75c586cbea065dec7 192 Pfam PF04961 Formiminotransferase-cyclodeaminase 13 170 2.0E-18 T 22-04-2016 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00379 TRD_RS03360 54ef1ee3c26a58b75c586cbea065dec7 192 SUPERFAMILY SSF101262 9 171 8.24E-18 T 22-04-2016 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00379 TRD_RS03625 6edfe85bc53da39ed42daf0a2e5c5a8d 181 PANTHER PTHR10371 41 169 3.1E-35 T 22-04-2016 TRD_RS03625 6edfe85bc53da39ed42daf0a2e5c5a8d 181 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 29 167 1.1E-35 T 22-04-2016 TRD_RS03625 6edfe85bc53da39ed42daf0a2e5c5a8d 181 SUPERFAMILY SSF52833 18 171 5.7E-37 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS03625 6edfe85bc53da39ed42daf0a2e5c5a8d 181 Gene3D G3DSA:3.40.30.10 88 167 2.8E-5 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS03625 6edfe85bc53da39ed42daf0a2e5c5a8d 181 PIRSF PIRSF000216 3 180 4.5E-40 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 TRD_RS01740 6d2e5e942596e679014ebaf406e853c6 106 PANTHER PTHR13696 6 100 4.5E-21 T 22-04-2016 TRD_RS01740 6d2e5e942596e679014ebaf406e853c6 106 SUPERFAMILY SSF117916 2 104 1.54E-31 T 22-04-2016 TRD_RS01740 6d2e5e942596e679014ebaf406e853c6 106 Pfam PF01883 Domain of unknown function DUF59 6 82 2.1E-17 T 22-04-2016 IPR002744 Domain of unknown function DUF59 TRD_RS01740 6d2e5e942596e679014ebaf406e853c6 106 PANTHER PTHR13696:SF62 6 100 4.5E-21 T 22-04-2016 TRD_RS01630 030b4b442661e5f5c51017a89007a58a 288 PANTHER PTHR34475:SF1 1 285 3.2E-26 T 22-04-2016 TRD_RS01630 030b4b442661e5f5c51017a89007a58a 288 PANTHER PTHR34475 1 285 3.2E-26 T 22-04-2016 TRD_RS01630 030b4b442661e5f5c51017a89007a58a 288 Pfam PF13464 Domain of unknown function (DUF4115) 222 280 4.6E-12 T 22-04-2016 IPR025194 Domain of unknown function DUF4115 TRD_RS01630 030b4b442661e5f5c51017a89007a58a 288 Gene3D G3DSA:1.10.260.40 1 74 9.1E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS01630 030b4b442661e5f5c51017a89007a58a 288 Pfam PF13413 Helix-turn-helix domain 8 67 4.2E-20 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 TRD_RS00755 ae91b671fab53f0145981b6e6adf3bdf 87 Pfam PF13192 Thioredoxin domain 3 79 2.6E-8 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS00755 ae91b671fab53f0145981b6e6adf3bdf 87 SUPERFAMILY SSF52833 4 81 6.21E-11 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS00755 ae91b671fab53f0145981b6e6adf3bdf 87 Gene3D G3DSA:3.40.30.10 3 79 1.3E-11 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS05340 ba6e1144a7c5a6acd02b542ce6bc50a7 369 SUPERFAMILY SSF53649 1 349 3.6E-64 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 TRD_RS05340 ba6e1144a7c5a6acd02b542ce6bc50a7 369 Gene3D G3DSA:3.40.720.10 3 266 3.8E-49 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 TRD_RS05340 ba6e1144a7c5a6acd02b542ce6bc50a7 369 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 6 245 5.3E-28 T 22-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 TRD_RS01455 6aed3c9df2555689b47f4233b790b830 226 Pfam PF03737 Demethylmenaquinone methyltransferase 31 183 1.8E-24 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS01455 6aed3c9df2555689b47f4233b790b830 226 PANTHER PTHR33254 77 210 1.5E-16 T 22-04-2016 TRD_RS01455 6aed3c9df2555689b47f4233b790b830 226 Gene3D G3DSA:3.50.30.40 16 191 3.9E-33 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS01455 6aed3c9df2555689b47f4233b790b830 226 SUPERFAMILY SSF89562 29 190 1.83E-27 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS01455 6aed3c9df2555689b47f4233b790b830 226 PANTHER PTHR33254:SF5 77 210 1.5E-16 T 22-04-2016 TRD_RS12365 c7d1988c967a4e2005da2ffe3af1b800 297 PANTHER PTHR34351 21 260 8.3E-62 T 22-04-2016 TRD_RS12365 c7d1988c967a4e2005da2ffe3af1b800 297 PANTHER PTHR34351 276 296 8.3E-62 T 22-04-2016 TRD_RS12365 c7d1988c967a4e2005da2ffe3af1b800 297 Pfam PF01882 Protein of unknown function DUF58 204 296 7.8E-21 T 22-04-2016 IPR002881 Domain of unknown function DUF58 TRD_RS12365 c7d1988c967a4e2005da2ffe3af1b800 297 PANTHER PTHR34351:SF2 21 260 8.3E-62 T 22-04-2016 TRD_RS12365 c7d1988c967a4e2005da2ffe3af1b800 297 PANTHER PTHR34351:SF2 276 296 8.3E-62 T 22-04-2016 TRD_RS02895 02afd2d46248f6bea8c3b183495b466e 290 PANTHER PTHR21240 1 290 2.6E-26 T 22-04-2016 TRD_RS02895 02afd2d46248f6bea8c3b183495b466e 290 Gene3D G3DSA:3.20.20.140 2 282 1.3E-42 T 22-04-2016 TRD_RS02895 02afd2d46248f6bea8c3b183495b466e 290 SUPERFAMILY SSF51556 3 284 4.41E-43 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS02895 02afd2d46248f6bea8c3b183495b466e 290 Pfam PF04909 Amidohydrolase 5 281 1.1E-34 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS05865 face8d792fde4301123afaae824c0983 625 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 131 530 2.5E-77 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS05865 face8d792fde4301123afaae824c0983 625 SUPERFAMILY SSF53850 86 621 3.5E-116 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 PANTHER PTHR30290 371 622 1.4E-233 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 PANTHER PTHR30290 14 354 1.4E-233 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 PANTHER PTHR30290:SF6 371 622 1.4E-233 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 PANTHER PTHR30290:SF6 14 354 1.4E-233 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 Gene3D G3DSA:3.40.190.10 255 380 2.0E-23 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 PIRSF PIRSF002741 52 624 2.3E-83 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS05865 face8d792fde4301123afaae824c0983 625 Gene3D G3DSA:3.90.76.10 99 254 1.2E-39 T 22-04-2016 TRD_RS05865 face8d792fde4301123afaae824c0983 625 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 36 5.0E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal TRD_RS05865 face8d792fde4301123afaae824c0983 625 Gene3D G3DSA:3.10.105.10 381 593 1.1E-45 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 SUPERFAMILY SSF51905 284 379 8.08E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 SUPERFAMILY SSF51905 4 184 8.08E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 310 8.2E-12 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 8.2E-12 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 8.2E-12 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 Pfam PF12831 FAD dependent oxidoreductase 7 147 2.3E-8 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 Gene3D G3DSA:3.50.50.60 3 69 3.7E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 Gene3D G3DSA:3.50.50.60 105 165 3.7E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 PANTHER PTHR10617 1 409 1.4E-123 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 Gene3D G3DSA:3.30.9.10 166 342 1.3E-23 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 PANTHER PTHR10617:SF98 1 409 1.4E-123 T 22-04-2016 TRD_RS00210 7ebc839623d8372d7fcbb081f8a6ef1d 432 SUPERFAMILY SSF54373 183 284 2.94E-17 T 22-04-2016 TRD_RS08170 820778ebd8cacecdb4a29bd1ab6d3f14 491 PIRSF PIRSF012702 1 491 8.6E-159 T 22-04-2016 IPR009197 Microcystin LR degradation protein MlrC TRD_RS08170 820778ebd8cacecdb4a29bd1ab6d3f14 491 Pfam PF07171 MlrC C-terminus 303 479 6.4E-60 T 22-04-2016 IPR010799 Microcystin LR degradation protein MlrC, C-terminal TRD_RS08170 820778ebd8cacecdb4a29bd1ab6d3f14 491 Pfam PF07364 Metallopeptidase family M81 5 292 2.4E-98 T 22-04-2016 IPR015995 Microcystin LR degradation protein MlrC, N-terminal TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 SUPERFAMILY SSF56655 4 315 3.66E-110 T 22-04-2016 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 PIRSF PIRSF004532 4 324 6.2E-142 T 22-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 6 313 2.1E-140 T 22-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 PANTHER PTHR30447 1 327 1.5E-169 T 22-04-2016 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 Gene3D G3DSA:3.30.540.10 4 175 2.4E-64 T 22-04-2016 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 Gene3D G3DSA:3.30.540.10 176 325 1.2E-44 T 22-04-2016 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 PANTHER PTHR30447:SF0 1 327 1.5E-169 T 22-04-2016 TRD_RS01560 e7da7851ab3d5c1a60cd239591402a1f 335 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 5 320 1.5E-115 T 22-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 TRD_RS02400 63b052f7fd347e14da6c28cc41e5a0e7 207 Pfam PF01966 HD domain 27 120 5.7E-10 T 22-04-2016 IPR006674 HD domain TRD_RS02400 63b052f7fd347e14da6c28cc41e5a0e7 207 Gene3D G3DSA:1.10.3210.10 8 186 1.9E-32 T 22-04-2016 IPR006674 HD domain TRD_RS02400 63b052f7fd347e14da6c28cc41e5a0e7 207 PANTHER PTHR38659 8 198 6.8E-84 T 22-04-2016 TRD_RS02400 63b052f7fd347e14da6c28cc41e5a0e7 207 TIGRFAM TIGR00277 HDIG: HDIG domain 24 99 2.7E-12 T 22-04-2016 IPR006675 HDIG domain TRD_RS02400 63b052f7fd347e14da6c28cc41e5a0e7 207 SUPERFAMILY SSF109604 11 121 2.44E-18 T 22-04-2016 TRD_RS02400 63b052f7fd347e14da6c28cc41e5a0e7 207 PANTHER PTHR38659:SF2 8 198 6.8E-84 T 22-04-2016 TRD_RS03490 0c1ad7366a819c4657a5e2533e64015e 246 Pfam PF04012 PspA/IM30 family 3 232 6.2E-25 T 22-04-2016 IPR007157 PspA/IM30 TRD_RS03490 0c1ad7366a819c4657a5e2533e64015e 246 PANTHER PTHR31088:SF0 2 243 8.2E-59 T 22-04-2016 TRD_RS03490 0c1ad7366a819c4657a5e2533e64015e 246 PANTHER PTHR31088 2 243 8.2E-59 T 22-04-2016 TRD_RS08410 5d4bee5636fe92849675e63059a909f8 822 PANTHER PTHR38454 706 820 1.5E-12 T 22-04-2016 TRD_RS08410 5d4bee5636fe92849675e63059a909f8 822 PANTHER PTHR38454:SF1 706 820 1.5E-12 T 22-04-2016 TRD_RS08410 5d4bee5636fe92849675e63059a909f8 822 Pfam PF09586 Bacterial membrane protein YfhO 715 783 5.1E-12 T 22-04-2016 IPR018580 Uncharacterised protein family YfhO TRD_RS06600 f2a82c98a0c000bce9fab5ed10678385 292 PANTHER PTHR11795 5 292 1.5E-46 T 22-04-2016 TRD_RS06600 f2a82c98a0c000bce9fab5ed10678385 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 279 2.9E-31 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 TRD_RS12610 b023bd1b18bf1d7e182b41e69eb7a9d8 69 PANTHER PTHR11773 1 66 7.7E-36 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS12610 b023bd1b18bf1d7e182b41e69eb7a9d8 69 SUPERFAMILY SSF53383 2 67 1.01E-18 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase TRD_RS12610 b023bd1b18bf1d7e182b41e69eb7a9d8 69 Pfam PF02347 Glycine cleavage system P-protein 2 64 4.2E-25 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 TRD_RS12610 b023bd1b18bf1d7e182b41e69eb7a9d8 69 Gene3D G3DSA:3.90.1150.10 28 69 3.3E-4 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 Gene3D G3DSA:3.40.50.2300 241 391 8.0E-30 T 22-04-2016 TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 Pfam PF13458 Periplasmic binding protein 113 455 4.2E-82 T 22-04-2016 IPR028081 Leucine-binding protein domain TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 PANTHER PTHR30483 96 476 5.8E-91 T 22-04-2016 TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 SUPERFAMILY SSF53822 113 460 1.5E-95 T 22-04-2016 IPR028082 Periplasmic binding protein-like I TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 PANTHER PTHR30483:SF13 96 476 5.8E-91 T 22-04-2016 TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 Gene3D G3DSA:3.40.50.2300 392 444 2.3E-48 T 22-04-2016 TRD_RS06565 a7a1aca2ad1592a7eb7a0103c3f90404 478 Gene3D G3DSA:3.40.50.2300 108 238 2.3E-48 T 22-04-2016 TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 1 25 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 Gene3D G3DSA:3.40.1190.20 1 268 8.4E-89 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 SUPERFAMILY SSF53613 1 269 4.68E-81 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 PANTHER PTHR10584:SF181 1 270 3.9E-113 T 22-04-2016 TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 PANTHER PTHR10584 1 270 3.9E-113 T 22-04-2016 TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 218 231 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 TRD_RS09690 721b98237253e4fff8682e8f0d434d62 270 Pfam PF00294 pfkB family carbohydrate kinase 1 268 2.3E-69 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 Pfam PF00276 Ribosomal protein L23 7 98 1.3E-35 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 PANTHER PTHR11620 8 62 9.9E-33 T 22-04-2016 TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 PANTHER PTHR11620 82 99 9.9E-33 T 22-04-2016 TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 6 101 23.5 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 SUPERFAMILY SSF54189 5 100 6.47E-32 T 22-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 Gene3D G3DSA:3.30.70.330 6 101 2.3E-36 T 22-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 TRD_RS04515 e6b3da979d327b4cf350b0e609699506 102 ProSitePatterns PS00050 Ribosomal protein L23 signature. 84 99 - T 22-04-2016 IPR001014 Ribosomal protein L23/L25, conserved site TRD_RS00835 e228d9de9bf08d1af10ad84d5309c807 475 PANTHER PTHR11895 2 467 1.3E-141 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS00835 e228d9de9bf08d1af10ad84d5309c807 475 ProSitePatterns PS00571 Amidases signature. 156 187 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS00835 e228d9de9bf08d1af10ad84d5309c807 475 Gene3D G3DSA:3.90.1300.10 3 465 1.3E-140 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS00835 e228d9de9bf08d1af10ad84d5309c807 475 Pfam PF01425 Amidase 29 449 9.6E-111 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS00835 e228d9de9bf08d1af10ad84d5309c807 475 SUPERFAMILY SSF75304 5 458 1.83E-142 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 TRD_RS03865 3dfa561b21559c5199bc3057f92ed72a 339 PANTHER PTHR39087 13 323 7.9E-18 T 22-04-2016 TRD_RS03865 3dfa561b21559c5199bc3057f92ed72a 339 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 33 323 2.5E-46 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS03865 3dfa561b21559c5199bc3057f92ed72a 339 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 55 212 1.2E-14 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS03865 3dfa561b21559c5199bc3057f92ed72a 339 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 233 325 1.4E-15 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS13645 ba9c301f801350cf20fdcebea32435a1 453 SUPERFAMILY SSF51679 149 445 1.06E-68 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS13645 ba9c301f801350cf20fdcebea32435a1 453 Pfam PF00296 Luciferase-like monooxygenase 154 390 9.1E-55 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS13645 ba9c301f801350cf20fdcebea32435a1 453 PANTHER PTHR30011 135 389 7.4E-58 T 22-04-2016 TRD_RS13645 ba9c301f801350cf20fdcebea32435a1 453 Gene3D G3DSA:3.20.20.30 143 444 8.6E-76 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 TRD_RS00370 27c5baca9dbc757551bde81596a20e2a 672 PANTHER PTHR11785:SF125 574 589 1.8E-161 T 22-04-2016 TRD_RS00370 27c5baca9dbc757551bde81596a20e2a 672 PANTHER PTHR11785:SF125 50 531 1.8E-161 T 22-04-2016 TRD_RS00370 27c5baca9dbc757551bde81596a20e2a 672 PANTHER PTHR11785 574 589 1.8E-161 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS00370 27c5baca9dbc757551bde81596a20e2a 672 PANTHER PTHR11785 50 531 1.8E-161 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS00370 27c5baca9dbc757551bde81596a20e2a 672 Pfam PF13520 Amino acid permease 85 489 4.9E-29 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 TRD_RS04970 2569e1f8dd92c8fa05f58ba4a0b434ee 264 PANTHER PTHR24220 5 226 5.8E-98 T 22-04-2016 TRD_RS04970 2569e1f8dd92c8fa05f58ba4a0b434ee 264 SUPERFAMILY SSF52540 3 224 7.72E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04970 2569e1f8dd92c8fa05f58ba4a0b434ee 264 SMART SM00382 28 212 2.7E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain TRD_RS04970 2569e1f8dd92c8fa05f58ba4a0b434ee 264 Gene3D G3DSA:3.40.50.300 3 224 4.7E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS04970 2569e1f8dd92c8fa05f58ba4a0b434ee 264 Pfam PF00005 ABC transporter 20 162 1.1E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 TRD_RS04970 2569e1f8dd92c8fa05f58ba4a0b434ee 264 PANTHER PTHR24220:SF429 5 226 5.8E-98 T 22-04-2016 TRD_RS07135 e78784c830224345c375ac14c2a938a5 220 PANTHER PTHR30363 10 216 4.9E-26 T 22-04-2016 TRD_RS07135 e78784c830224345c375ac14c2a938a5 220 Gene3D G3DSA:1.10.10.10 14 102 1.5E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS07135 e78784c830224345c375ac14c2a938a5 220 PANTHER PTHR30363:SF17 10 216 4.9E-26 T 22-04-2016 TRD_RS07135 e78784c830224345c375ac14c2a938a5 220 Pfam PF08279 HTH domain 14 60 2.8E-7 T 22-04-2016 IPR013196 Helix-turn-helix, type 11 TRD_RS07135 e78784c830224345c375ac14c2a938a5 220 SUPERFAMILY SSF46785 13 194 1.23E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS13510 55fd19df6dee3f5b6d9e006e15c3f272 445 PANTHER PTHR30619 4 441 7.7E-44 T 22-04-2016 TRD_RS13510 55fd19df6dee3f5b6d9e006e15c3f272 445 Pfam PF03772 Competence protein 182 437 5.5E-42 T 22-04-2016 IPR004477 ComEC/Rec2-related protein TRD_RS13510 55fd19df6dee3f5b6d9e006e15c3f272 445 PANTHER PTHR30619:SF2 4 441 7.7E-44 T 22-04-2016 TRD_RS13510 55fd19df6dee3f5b6d9e006e15c3f272 445 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 204 369 1.6E-19 T 22-04-2016 IPR004477 ComEC/Rec2-related protein TRD_RS00090 39a9e228d325052f4a4720d1269b1072 235 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 5 47 1.8E-11 T 22-04-2016 IPR013422 CRISPR-associated protein Cas5, N-terminal TRD_RS00320 adf929b8478abee0651a4f6096b79a9d 161 PANTHER PTHR30455:SF2 2 156 6.9E-66 T 22-04-2016 TRD_RS00320 adf929b8478abee0651a4f6096b79a9d 161 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 154 79.862 T 22-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 TRD_RS00320 adf929b8478abee0651a4f6096b79a9d 161 PANTHER PTHR30455 2 156 6.9E-66 T 22-04-2016 TRD_RS00320 adf929b8478abee0651a4f6096b79a9d 161 Pfam PF03477 ATP cone domain 50 135 1.3E-19 T 22-04-2016 IPR005144 ATP-cone domain TRD_RS00320 adf929b8478abee0651a4f6096b79a9d 161 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 1.4E-57 T 22-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 2.0E-21 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 PANTHER PTHR33343 1 65 3.6E-17 T 22-04-2016 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 22-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.1E-11 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.1E-11 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.1E-11 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 SUPERFAMILY SSF143034 2 64 3.79E-20 T 22-04-2016 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.679 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 TRD_RS03795 3232223a3a9a0d1980cfeeea93907baa 66 Pfam PF01632 Ribosomal protein L35 2 62 1.6E-18 T 22-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 PANTHER PTHR11926:SF16 108 194 2.9E-36 T 22-04-2016 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 PANTHER PTHR11926:SF16 213 427 2.9E-36 T 22-04-2016 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 PANTHER PTHR11926:SF16 1 77 2.9E-36 T 22-04-2016 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 264 397 6.2E-14 T 22-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 SUPERFAMILY SSF53756 6 424 3.56E-71 T 22-04-2016 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 Gene3D G3DSA:3.40.50.2000 246 404 1.3E-32 T 22-04-2016 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 PANTHER PTHR11926 108 194 2.9E-36 T 22-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 PANTHER PTHR11926 213 427 2.9E-36 T 22-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 TRD_RS06630 d2fee961fc8a4d52421c166bc917f732 435 PANTHER PTHR11926 1 77 2.9E-36 T 22-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 TRD_RS04830 5c2d9a89cc4977cf539158a12fcd826b 219 PANTHER PTHR10954 21 211 7.9E-56 T 22-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 TRD_RS04830 5c2d9a89cc4977cf539158a12fcd826b 219 Gene3D G3DSA:3.30.420.10 33 173 6.4E-40 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS04830 5c2d9a89cc4977cf539158a12fcd826b 219 Pfam PF01351 Ribonuclease HII 35 211 8.6E-34 T 22-04-2016 IPR024567 Ribonuclease HII/HIII domain TRD_RS04830 5c2d9a89cc4977cf539158a12fcd826b 219 SUPERFAMILY SSF53098 23 212 3.03E-57 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS04830 5c2d9a89cc4977cf539158a12fcd826b 219 Hamap MF_00052_B Ribonuclease HII [rnhB]. 33 213 32.717 T 22-04-2016 IPR022898 Ribonuclease HII GO:0004523 TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 7.5E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 7.5E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 7.5E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.8E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.8E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 1.8E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.8E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.8E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PANTHER PTHR24322:SF328 161 192 2.2E-37 T 22-04-2016 TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PANTHER PTHR24322:SF328 11 144 2.2E-37 T 22-04-2016 TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 SUPERFAMILY SSF51735 7 246 1.17E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PANTHER PTHR24322 161 192 2.2E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 PANTHER PTHR24322 11 144 2.2E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 Gene3D G3DSA:3.40.50.720 1 246 1.8E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01395 5b063faaee235d37839121e7d80281ee 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 244 5.3E-51 T 22-04-2016 TRD_RS02050 e46460e2bf424d7a2531e0513c241d24 74 Pfam PF11146 Protein of unknown function (DUF2905) 8 71 4.7E-23 T 22-04-2016 IPR021320 Protein of unknown function DUF2905 TRD_RS02050 e46460e2bf424d7a2531e0513c241d24 74 PANTHER PTHR36443:SF1 5 73 1.9E-21 T 22-04-2016 TRD_RS02050 e46460e2bf424d7a2531e0513c241d24 74 PANTHER PTHR36443 5 73 1.9E-21 T 22-04-2016 TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 PANTHER PTHR10344 3 210 7.4E-74 T 22-04-2016 TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 Gene3D G3DSA:3.40.50.300 4 204 1.8E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 194 1.3E-53 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 SUPERFAMILY SSF52540 4 205 3.76E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 Hamap MF_00165 Thymidylate kinase [tmk]. 3 203 30.859 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 ProSitePatterns PS01331 Thymidylate kinase signature. 90 102 - T 22-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 TRD_RS00975 4f3eeda4bd6fd667fccaac68a52d95b5 210 Pfam PF02223 Thymidylate kinase 7 194 5.7E-55 T 22-04-2016 TRD_RS05105 38fdd94bccf8283499a1a41fda98cceb 153 Pfam PF13115 YtkA-like 32 114 1.6E-14 T 22-04-2016 IPR032693 YtkA-like domain TRD_RS07160 3df3b0759aae3c3636f01cf5c9ffe46b 70 Pfam PF09851 Short C-terminal domain 41 66 4.2E-8 T 22-04-2016 IPR018649 SHOCT domain TRD_RS07325 deaf6515bbf54044aabcb58f5b20db3d 157 Pfam PF00293 NUDIX domain 24 129 1.6E-12 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 TRD_RS07325 deaf6515bbf54044aabcb58f5b20db3d 157 SUPERFAMILY SSF55811 11 140 1.14E-19 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS07325 deaf6515bbf54044aabcb58f5b20db3d 157 Gene3D G3DSA:3.90.79.10 7 140 4.1E-19 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 TRD_RS04955 fa62b7bf058cfbc6a34b0a98976d1905 244 PANTHER PTHR33254 18 241 2.1E-67 T 22-04-2016 TRD_RS04955 fa62b7bf058cfbc6a34b0a98976d1905 244 Gene3D G3DSA:3.50.30.40 20 196 2.3E-44 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04955 fa62b7bf058cfbc6a34b0a98976d1905 244 SUPERFAMILY SSF89562 20 197 2.35E-39 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04955 fa62b7bf058cfbc6a34b0a98976d1905 244 Pfam PF03737 Demethylmenaquinone methyltransferase 34 187 1.4E-29 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein TRD_RS04955 fa62b7bf058cfbc6a34b0a98976d1905 244 PANTHER PTHR33254:SF2 18 241 2.1E-67 T 22-04-2016 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 Gene3D G3DSA:3.20.20.70 26 295 8.5E-61 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 Hamap MF_00206 Lipoyl synthase [lipA]. 1 298 133.779 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 PANTHER PTHR10949 10 302 6.2E-136 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 PIRSF PIRSF005963 2 302 6.0E-123 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 SUPERFAMILY SSF102114 24 298 4.84E-57 T 22-04-2016 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 Pfam PF04055 Radical SAM superfamily 65 225 4.1E-10 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 SMART SM00729 59 267 4.7E-8 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 TRD_RS00810 c4eac55c270bfaf4ad3d5a69682c56f7 303 TIGRFAM TIGR00510 lipA: lipoyl synthase 10 294 1.9E-99 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 TRD_RS08265 eca5e8cad0f06bbde544f50974e026f4 219 PANTHER PTHR40078 7 214 2.0E-30 T 22-04-2016 TRD_RS08265 eca5e8cad0f06bbde544f50974e026f4 219 PANTHER PTHR40078:SF1 7 214 2.0E-30 T 22-04-2016 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 SUPERFAMILY SSF54534 84 155 5.89E-19 T 22-04-2016 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Hamap MF_00105 Transcription elongation factor GreA [greA]. 4 156 31.436 T 22-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Gene3D G3DSA:3.10.50.30 80 156 3.4E-25 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 PIRSF PIRSF006092 1 156 5.7E-48 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 SUPERFAMILY SSF46557 5 79 2.35E-24 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 7 155 8.3E-48 T 22-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 PANTHER PTHR30437 1 155 3.9E-50 T 22-04-2016 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Gene3D G3DSA:1.10.287.180 4 77 9.8E-28 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 1.0E-27 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 TRD_RS05005 0cbd3df596ac8b4bd5d06dd9ad4c19ea 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 155 2.9E-23 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 TRD_RS02725 043af717d5565d8c394259f7e6e75124 307 SUPERFAMILY SSF142754 5 306 4.32E-109 T 22-04-2016 TRD_RS02725 043af717d5565d8c394259f7e6e75124 307 Hamap MF_00568 Quinolinate synthase A [nadA]. 4 306 44.609 T 22-04-2016 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 TRD_RS02725 043af717d5565d8c394259f7e6e75124 307 Pfam PF02445 Quinolinate synthetase A protein 9 305 2.2E-113 T 22-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 TRD_RS02725 043af717d5565d8c394259f7e6e75124 307 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 1 306 2.0E-101 T 22-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 TRD_RS02725 043af717d5565d8c394259f7e6e75124 307 PANTHER PTHR30573 1 306 1.1E-135 T 22-04-2016 TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 PANTHER PTHR12083:SF8 16 384 8.5E-132 T 22-04-2016 TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 Gene3D G3DSA:3.40.50.300 349 530 5.2E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 Gene3D G3DSA:3.90.1200.10 136 279 2.9E-5 T 22-04-2016 TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 PANTHER PTHR12083:SF8 413 517 8.5E-132 T 22-04-2016 TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 PANTHER PTHR12083 16 384 8.5E-132 T 22-04-2016 TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 PANTHER PTHR12083 413 517 8.5E-132 T 22-04-2016 TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 SUPERFAMILY SSF52540 347 531 3.11E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 SUPERFAMILY SSF56112 8 304 3.06E-13 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS06240 de18e49ba51d586cd8e5e28f81e88866 536 Pfam PF13671 AAA domain 351 497 1.2E-23 T 22-04-2016 TRD_RS06335 db77c9577d04dd3127bb91d196e7e311 104 SUPERFAMILY SSF51182 8 88 3.61E-22 T 22-04-2016 IPR011051 RmlC-like cupin domain TRD_RS06335 db77c9577d04dd3127bb91d196e7e311 104 Pfam PF07883 Cupin domain 21 86 1.2E-14 T 22-04-2016 IPR013096 Cupin 2, conserved barrel TRD_RS06335 db77c9577d04dd3127bb91d196e7e311 104 Gene3D G3DSA:2.60.120.10 11 96 1.6E-25 T 22-04-2016 IPR014710 RmlC-like jelly roll fold TRD_RS06335 db77c9577d04dd3127bb91d196e7e311 104 PANTHER PTHR40112 4 96 4.0E-25 T 22-04-2016 TRD_RS06335 db77c9577d04dd3127bb91d196e7e311 104 PIRSF PIRSF029883 8 100 1.0E-24 T 22-04-2016 IPR025499 Pectin degradation protein KdgF UniPathway: UPA00545 TRD_RS03995 cde031362bc6671c883e72bc4d5c02f5 390 Pfam PF10103 Zinicin-like metallopeptidase 38 381 1.7E-85 T 22-04-2016 IPR018766 Zinicin-like metallopeptidase type 2 TRD_RS03995 cde031362bc6671c883e72bc4d5c02f5 390 PANTHER PTHR39420:SF1 25 384 3.1E-86 T 22-04-2016 TRD_RS03995 cde031362bc6671c883e72bc4d5c02f5 390 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 38 384 1.4E-78 T 22-04-2016 IPR018766 Zinicin-like metallopeptidase type 2 TRD_RS03995 cde031362bc6671c883e72bc4d5c02f5 390 TIGRFAM TIGR03883 DUF2342_F420: uncharacterized protein, coenzyme F420 biosynthesis associated 38 385 9.7E-124 T 22-04-2016 IPR022454 Conserved hypothetical protein CHP03883, F420 biosynthesis associated TRD_RS03995 cde031362bc6671c883e72bc4d5c02f5 390 PANTHER PTHR39420 25 384 3.1E-86 T 22-04-2016 TRD_RS03995 cde031362bc6671c883e72bc4d5c02f5 390 SUPERFAMILY SSF55486 37 384 1.83E-88 T 22-04-2016 TRD_RS02075 fcbdc38f2bb15464e45436c817cd62dc 326 Gene3D G3DSA:3.90.1200.10 111 253 3.8E-6 T 22-04-2016 TRD_RS02075 fcbdc38f2bb15464e45436c817cd62dc 326 SUPERFAMILY SSF56112 72 270 3.27E-8 T 22-04-2016 IPR011009 Protein kinase-like domain TRD_RS05190 4b5f9548dc41c49b9d5270656bc0a80e 326 Pfam PF00892 EamA-like transporter family 30 158 5.3E-11 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 TRD_RS05190 4b5f9548dc41c49b9d5270656bc0a80e 326 Pfam PF00892 EamA-like transporter family 170 303 5.2E-13 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 TRD_RS05190 4b5f9548dc41c49b9d5270656bc0a80e 326 SUPERFAMILY SSF103481 207 308 1.57E-11 T 22-04-2016 TRD_RS05190 4b5f9548dc41c49b9d5270656bc0a80e 326 PANTHER PTHR22911 1 311 1.6E-29 T 22-04-2016 TRD_RS13665 aa41f433891272b14b707c7c3c47c14d 277 Gene3D G3DSA:3.30.1490.20 93 170 3.4E-6 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 TRD_RS13665 aa41f433891272b14b707c7c3c47c14d 277 PANTHER PTHR21621 12 191 3.3E-12 T 22-04-2016 TRD_RS13665 aa41f433891272b14b707c7c3c47c14d 277 SUPERFAMILY SSF56059 78 263 1.06E-14 T 22-04-2016 TRD_RS13665 aa41f433891272b14b707c7c3c47c14d 277 SUPERFAMILY SSF52440 4 84 2.36E-8 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS13665 aa41f433891272b14b707c7c3c47c14d 277 Gene3D G3DSA:3.40.50.20 4 92 2.1E-13 T 22-04-2016 IPR016185 Pre-ATP-grasp domain TRD_RS05015 e9866be1afffcb11211479cdd881df17 293 PANTHER PTHR10584 29 287 4.3E-16 T 22-04-2016 TRD_RS05015 e9866be1afffcb11211479cdd881df17 293 Pfam PF00294 pfkB family carbohydrate kinase 189 273 8.1E-12 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB TRD_RS05015 e9866be1afffcb11211479cdd881df17 293 SUPERFAMILY SSF53613 9 282 2.81E-34 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS05015 e9866be1afffcb11211479cdd881df17 293 Gene3D G3DSA:3.40.1190.20 7 286 1.9E-33 T 22-04-2016 IPR029056 Ribokinase-like TRD_RS05015 e9866be1afffcb11211479cdd881df17 293 PANTHER PTHR10584:SF166 29 287 4.3E-16 T 22-04-2016 TRD_RS01340 4fc26de35b3c486d51ddab6761c46b3e 271 ProDom PD065237 RESTRICTION MA4585 ORF11 MM1264 PRECURSOR HGICIIM SYSTEM 5'REGION SIGNAL SIMILAR 176 262 3.0E-12 T 22-04-2016 IPR020391 Uncharacterised protein family 10.2kDa TRD_RS12565 fd97bed0d2f50249276a9d1b76071159 124 Pfam PF01259 SAICAR synthetase 1 122 5.6E-47 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS12565 fd97bed0d2f50249276a9d1b76071159 124 PANTHER PTHR11609 1 124 2.9E-52 T 22-04-2016 TRD_RS12565 fd97bed0d2f50249276a9d1b76071159 124 PANTHER PTHR11609:SF6 1 124 2.9E-52 T 22-04-2016 TRD_RS12565 fd97bed0d2f50249276a9d1b76071159 124 ProSitePatterns PS01058 SAICAR synthetase signature 2. 60 68 - T 22-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 TRD_RS12565 fd97bed0d2f50249276a9d1b76071159 124 SUPERFAMILY SSF56104 1 122 6.87E-41 T 22-04-2016 TRD_RS12565 fd97bed0d2f50249276a9d1b76071159 124 Gene3D G3DSA:3.30.470.20 1 113 2.3E-35 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 TRD_RS04975 ca232352a6844fba77955fe912a7be06 153 SUPERFAMILY SSF46785 7 144 1.8E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04975 ca232352a6844fba77955fe912a7be06 153 Gene3D G3DSA:1.10.10.10 5 143 1.6E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS04975 ca232352a6844fba77955fe912a7be06 153 SMART SM00347 27 128 5.5E-19 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS04975 ca232352a6844fba77955fe912a7be06 153 PANTHER PTHR33164 1 152 9.4E-23 T 22-04-2016 TRD_RS04975 ca232352a6844fba77955fe912a7be06 153 Pfam PF01047 MarR family 34 84 1.8E-11 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 TRD_RS02575 058b63d4daa89c1e82de9a75eae73669 155 Gene3D G3DSA:2.60.40.420 61 154 9.9E-28 T 22-04-2016 IPR008972 Cupredoxin TRD_RS02575 058b63d4daa89c1e82de9a75eae73669 155 PANTHER PTHR22888:SF12 65 154 7.0E-36 T 22-04-2016 TRD_RS02575 058b63d4daa89c1e82de9a75eae73669 155 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 82 149 8.1E-10 T 22-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 TRD_RS02575 058b63d4daa89c1e82de9a75eae73669 155 SUPERFAMILY SSF49503 63 154 4.22E-31 T 22-04-2016 IPR008972 Cupredoxin TRD_RS02575 058b63d4daa89c1e82de9a75eae73669 155 PANTHER PTHR22888 65 154 7.0E-36 T 22-04-2016 TRD_RS02575 058b63d4daa89c1e82de9a75eae73669 155 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 100 148 - T 22-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993 550 574 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993 431 530 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993 16 126 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993 349 408 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993 168 236 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 SUPERFAMILY SSF56762 9 567 7.2E-109 T 22-04-2016 IPR029014 NiFe hydrogenase-like TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 Pfam PF00374 Nickel-dependent hydrogenase 173 567 5.3E-46 T 22-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 Pfam PF00374 Nickel-dependent hydrogenase 49 130 1.7E-16 T 22-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 Gene3D G3DSA:1.10.645.10 12 567 2.2E-155 T 22-04-2016 IPR029014 NiFe hydrogenase-like TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993:SF11 550 574 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993:SF11 431 530 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993:SF11 16 126 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993:SF11 349 408 3.3E-54 T 22-04-2016 TRD_RS08775 77e3862c0f6bccaea07d882e0bb4f17e 588 PANTHER PTHR11993:SF11 168 236 3.3E-54 T 22-04-2016 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 Gene3D G3DSA:3.40.605.10 3 261 1.5E-105 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 PANTHER PTHR11699 4 499 3.2E-261 T 22-04-2016 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 PANTHER PTHR11699:SF200 4 499 3.2E-261 T 22-04-2016 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 Gene3D G3DSA:3.40.309.10 262 451 2.1E-72 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 SUPERFAMILY SSF53720 3 480 8.51E-172 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 TRD_RS07360 6d3d16e7e4b1d3c952ffb4a7cb0c1de3 499 Pfam PF00171 Aldehyde dehydrogenase family 12 477 5.7E-177 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 TRD_RS03835 66aefd6ded9b4bca12de09d94fe6ce67 434 Pfam PF01098 Cell cycle protein 73 433 8.7E-72 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 TRD_RS03835 66aefd6ded9b4bca12de09d94fe6ce67 434 PANTHER PTHR30474:SF3 69 433 4.1E-110 T 22-04-2016 TRD_RS03835 66aefd6ded9b4bca12de09d94fe6ce67 434 PANTHER PTHR30474 69 433 4.1E-110 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 TRD_RS08790 fcb7229910c7f7460b9dd2ac2eb00e0a 115 Pfam PF13451 Probable zinc-ribbon domain 7 52 1.1E-24 T 22-04-2016 IPR025306 Probable zinc-binding domain TRD_RS08790 fcb7229910c7f7460b9dd2ac2eb00e0a 115 TIGRFAM TIGR04272 cxxc_cxxc_Mbark: CxxC-x17-CxxC domain 73 109 1.3E-20 T 22-04-2016 IPR026363 CxxC-x17-CxxC domain TRD_RS00625 3939a9185c37d529eb109fb3cd477f68 279 SUPERFAMILY SSF51735 6 166 7.54E-12 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00625 3939a9185c37d529eb109fb3cd477f68 279 Gene3D G3DSA:1.10.3640.10 178 278 2.3E-36 T 22-04-2016 TRD_RS00625 3939a9185c37d529eb109fb3cd477f68 279 Gene3D G3DSA:3.40.50.720 3 168 8.6E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS00625 3939a9185c37d529eb109fb3cd477f68 279 Pfam PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term 124 277 9.7E-63 T 22-04-2016 IPR031663 Phosphogluconate dehydrogenase (decarboxylating) , C-terminal TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 2.1E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.1E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 2.1E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 2.1E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 SUPERFAMILY SSF51735 10 259 3.76E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 258 3.7E-46 T 22-04-2016 TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 Gene3D G3DSA:3.40.50.720 5 259 2.6E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 PANTHER PTHR24322 50 201 1.0E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS01265 ff9b14666abd18c589e0ff78ec3635b5 263 PANTHER PTHR24322 13 32 1.0E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR TRD_RS09035 a344e6b35556387b88b708b6ad60637e 814 Pfam PF03065 Glycosyl hydrolase family 57 110 310 5.4E-17 T 22-04-2016 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 TRD_RS09035 a344e6b35556387b88b708b6ad60637e 814 Pfam PF12055 Domain of unknown function (DUF3536) 337 620 1.4E-109 T 22-04-2016 IPR021923 Protein of unknown function DUF3536 TRD_RS09035 a344e6b35556387b88b708b6ad60637e 814 SUPERFAMILY SSF88713 3 323 1.74E-70 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 TRD_RS09035 a344e6b35556387b88b708b6ad60637e 814 Gene3D G3DSA:3.20.110.10 3 323 2.7E-65 T 22-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain TRD_RS08335 154ab0c278e11ce589409c9d02c14e52 241 PANTHER PTHR33269 1 197 2.3E-42 T 22-04-2016 TRD_RS08335 154ab0c278e11ce589409c9d02c14e52 241 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 167 9.6E-34 T 22-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 TRD_RS08335 154ab0c278e11ce589409c9d02c14e52 241 PANTHER PTHR33269:SF1 1 197 2.3E-42 T 22-04-2016 TRD_RS07190 314c4c33d93535b6e55d938ac66303f6 395 Pfam PF11611 Domain of unknown function (DUF4352) 283 385 1.8E-12 T 22-04-2016 IPR029051 Domain of unknown function DUF4352 TRD_RS07190 314c4c33d93535b6e55d938ac66303f6 395 Pfam PF11611 Domain of unknown function (DUF4352) 114 212 3.6E-13 T 22-04-2016 IPR029051 Domain of unknown function DUF4352 TRD_RS07190 314c4c33d93535b6e55d938ac66303f6 395 Gene3D G3DSA:2.60.40.1240 116 220 1.6E-10 T 22-04-2016 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain TRD_RS07190 314c4c33d93535b6e55d938ac66303f6 395 Gene3D G3DSA:2.60.40.1240 283 393 3.1E-14 T 22-04-2016 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain TRD_RS05590 eb52325548f0ffd2b1e941f87d1e0a64 230 Pfam PF04298 Putative neutral zinc metallopeptidase 8 223 2.2E-89 T 22-04-2016 IPR007395 Putative neutral zinc metallopeptidase TRD_RS05590 eb52325548f0ffd2b1e941f87d1e0a64 230 PANTHER PTHR36434 1 230 6.7E-112 T 22-04-2016 TRD_RS07750 0553fda9885e7ac9e144d4f0d31f8142 530 Pfam PF13556 PucR C-terminal helix-turn-helix domain 461 517 1.2E-20 T 22-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain TRD_RS07750 0553fda9885e7ac9e144d4f0d31f8142 530 PANTHER PTHR33744 7 528 2.1E-24 T 22-04-2016 TRD_RS06520 425d8fadb8266bfaa885e2907458d360 242 Gene3D G3DSA:3.90.850.10 7 224 2.3E-42 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS06520 425d8fadb8266bfaa885e2907458d360 242 SUPERFAMILY SSF56529 8 228 1.44E-38 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 TRD_RS06520 425d8fadb8266bfaa885e2907458d360 242 PANTHER PTHR30143 1 224 1.2E-48 T 22-04-2016 TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 PANTHER PTHR39338:SF1 4 403 2.3E-126 T 22-04-2016 TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 PANTHER PTHR39338 4 403 2.3E-126 T 22-04-2016 TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 Gene3D G3DSA:3.40.50.410 221 341 7.0E-10 T 22-04-2016 IPR002035 von Willebrand factor, type A TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 SUPERFAMILY SSF53300 223 355 4.28E-19 T 22-04-2016 IPR002035 von Willebrand factor, type A TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 Pfam PF05762 VWA domain containing CoxE-like protein 174 388 1.2E-77 T 22-04-2016 IPR008912 Uncharacterised protein family CoxE-like TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 SMART SM00327 224 400 6.4E-10 T 22-04-2016 IPR002035 von Willebrand factor, type A TRD_RS05645 41420ec20d16aa5935dd8ddacae7b29f 417 PIRSF PIRSF010256 1 398 2.8E-120 T 22-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 TRD_RS03975 80ee04bcff020dcce509ff5c8246b06b 198 Gene3D G3DSA:1.10.3210.10 21 150 3.6E-8 T 22-04-2016 IPR006674 HD domain TRD_RS03975 80ee04bcff020dcce509ff5c8246b06b 198 Pfam PF01966 HD domain 24 133 9.4E-6 T 22-04-2016 IPR006674 HD domain TRD_RS03975 80ee04bcff020dcce509ff5c8246b06b 198 PANTHER PTHR30005:SF0 21 190 7.0E-22 T 22-04-2016 TRD_RS03975 80ee04bcff020dcce509ff5c8246b06b 198 SUPERFAMILY SSF109604 20 194 9.42E-39 T 22-04-2016 TRD_RS03975 80ee04bcff020dcce509ff5c8246b06b 198 PANTHER PTHR30005 21 190 7.0E-22 T 22-04-2016 TRD_RS08510 7626019fc815ecc4f83d19eaab4f1216 275 Pfam PF09858 Predicted membrane protein (DUF2085) 51 151 1.2E-20 T 22-04-2016 IPR019206 Protein of unknown function DUF2085, transmembrane TRD_RS02095 f4ac0549c66912c8378f003252bbccc3 304 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 5 237 5.5E-44 T 22-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 TRD_RS02095 f4ac0549c66912c8378f003252bbccc3 304 PIRSF PIRSF015582 1 303 5.2E-89 T 22-04-2016 IPR011206 Citrate lyase beta subunit-like TRD_RS02095 f4ac0549c66912c8378f003252bbccc3 304 PANTHER PTHR32308:SF0 1 302 7.8E-91 T 22-04-2016 TRD_RS02095 f4ac0549c66912c8378f003252bbccc3 304 SUPERFAMILY SSF51621 3 248 1.18E-65 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS02095 f4ac0549c66912c8378f003252bbccc3 304 Gene3D G3DSA:3.20.20.60 2 248 2.2E-77 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 TRD_RS02095 f4ac0549c66912c8378f003252bbccc3 304 PANTHER PTHR32308 1 302 7.8E-91 T 22-04-2016 IPR011206 Citrate lyase beta subunit-like TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 PANTHER PTHR39425:SF1 1 177 1.0E-37 T 22-04-2016 TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 SUPERFAMILY SSF48695 12 166 1.25E-27 T 22-04-2016 IPR011031 Multihaem cytochrome TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 Gene3D G3DSA:3.90.10.10 36 84 7.2E-8 T 22-04-2016 TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 PANTHER PTHR39425 1 177 1.0E-37 T 22-04-2016 TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 Pfam PF02085 Class III cytochrome C family 38 92 2.7E-5 T 22-04-2016 IPR020942 Class III cytochrome C GO:0009055|GO:0020037 TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 Pfam PF14522 Cytochrome c7 and related cytochrome c 120 177 4.6E-6 T 22-04-2016 TRD_RS02165 fb81c720e4a1c571cc2e4bd2aa85338f 177 Gene3D G3DSA:3.90.10.10 110 176 3.6E-11 T 22-04-2016 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 PANTHER PTHR23135 263 458 2.8E-101 T 22-04-2016 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 PANTHER PTHR23135 52 232 2.8E-101 T 22-04-2016 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 Pfam PF08245 Mur ligase middle domain 57 197 1.7E-13 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 Gene3D G3DSA:3.40.1190.10 246 311 1.2E-42 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 Gene3D G3DSA:3.40.1190.10 54 198 1.2E-42 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 SUPERFAMILY SSF53623 246 309 1.05E-34 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 SUPERFAMILY SSF53623 54 199 1.05E-34 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 Pfam PF08353 Domain of unknown function (DUF1727) 331 440 8.0E-28 T 22-04-2016 IPR013564 Domain of unknown function DUF1727 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 PANTHER PTHR23135:SF7 263 458 2.8E-101 T 22-04-2016 TRD_RS09045 541841a764fbbeed69b9780c8157ff2a 459 PANTHER PTHR23135:SF7 52 232 2.8E-101 T 22-04-2016 TRD_RS13525 3c645af9d68df142d8b1daa5cf7439c2 148 PANTHER PTHR39158 1 125 9.6E-13 T 22-04-2016 TRD_RS13525 3c645af9d68df142d8b1daa5cf7439c2 148 Pfam PF09350 Domain of unknown function (DUF1992) 7 71 1.0E-20 T 22-04-2016 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain TRD_RS07790 526c19d3c952318a388343f923d99b8f 578 Gene3D G3DSA:3.20.20.80 74 400 1.1E-57 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 TRD_RS07790 526c19d3c952318a388343f923d99b8f 578 SUPERFAMILY SSF51445 74 400 8.41E-56 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily TRD_RS07790 526c19d3c952318a388343f923d99b8f 578 PANTHER PTHR12631 1 410 1.2E-61 T 22-04-2016 TRD_RS07790 526c19d3c952318a388343f923d99b8f 578 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 61 233 8.2E-12 T 22-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 TRD_RS07790 526c19d3c952318a388343f923d99b8f 578 PANTHER PTHR12631:SF4 1 410 1.2E-61 T 22-04-2016 TRD_RS01860 c4c0088a0a84f9079dc97e4e206cd008 119 Gene3D G3DSA:1.10.10.10 11 97 1.1E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain TRD_RS01860 c4c0088a0a84f9079dc97e4e206cd008 119 PANTHER PTHR10815 6 117 6.5E-29 T 22-04-2016 TRD_RS01860 c4c0088a0a84f9079dc97e4e206cd008 119 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 12 94 1.3E-22 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 TRD_RS01860 c4c0088a0a84f9079dc97e4e206cd008 119 SUPERFAMILY SSF46767 11 96 1.96E-21 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 TRD_RS06210 d6e01205f75ad7436d23f126283fab20 163 SUPERFAMILY SSF50800 4 159 1.62E-35 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain TRD_RS06210 d6e01205f75ad7436d23f126283fab20 163 Gene3D G3DSA:2.40.33.20 2 159 3.7E-42 T 22-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like TRD_RS06210 d6e01205f75ad7436d23f126283fab20 163 PANTHER PTHR36930 2 160 4.3E-18 T 22-04-2016 TRD_RS06210 d6e01205f75ad7436d23f126283fab20 163 PANTHER PTHR36930:SF1 2 160 4.3E-18 T 22-04-2016 TRD_RS06210 d6e01205f75ad7436d23f126283fab20 163 Pfam PF03473 MOSC domain 55 156 2.6E-11 T 22-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 Gene3D G3DSA:3.90.190.20 211 325 2.3E-4 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 Gene3D G3DSA:3.40.1190.10 126 194 6.8E-12 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 Gene3D G3DSA:3.40.1190.10 35 81 6.8E-12 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 SUPERFAMILY SSF53244 210 325 3.05E-5 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 PANTHER PTHR23135 37 115 7.5E-23 T 22-04-2016 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 PANTHER PTHR23135 147 311 7.5E-23 T 22-04-2016 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 PANTHER PTHR23135:SF18 37 115 7.5E-23 T 22-04-2016 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 PANTHER PTHR23135:SF18 147 311 7.5E-23 T 22-04-2016 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 SUPERFAMILY SSF53623 137 194 1.83E-9 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS03375 c137153ee82a8eb663a2ef506cc0d913 343 SUPERFAMILY SSF53623 39 84 1.83E-9 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 TRD_RS04025 7274ef97707c55a877a15c70bc801d76 351 PANTHER PTHR21716 8 351 5.2E-63 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like TRD_RS04025 7274ef97707c55a877a15c70bc801d76 351 Pfam PF01594 Domain of unknown function DUF20 15 348 1.3E-56 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 6.1E-38 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 83 3.0E-13 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 PANTHER PTHR15893 2 85 2.0E-45 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 PRINTS PR00063 Ribosomal protein L27 signature 4 28 8.5E-38 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 PRINTS PR00063 Ribosomal protein L27 signature 54 78 8.5E-38 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 PRINTS PR00063 Ribosomal protein L27 signature 29 53 8.5E-38 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 SUPERFAMILY SSF110324 2 83 8.37E-34 T 22-04-2016 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 22-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 28.382 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 Pfam PF01016 Ribosomal L27 protein 2 81 2.2E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS06690 46a7ee921d33dcfa3f45cec26c31a979 99 Gene3D G3DSA:2.40.50.100 20 83 4.8E-30 T 22-04-2016 TRD_RS13635 a71d690c86eb763d2d70498ee3cb3d32 537 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 264 437 4.9E-22 T 22-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain TRD_RS13635 a71d690c86eb763d2d70498ee3cb3d32 537 PANTHER PTHR33392:SF6 244 517 5.1E-41 T 22-04-2016 TRD_RS13635 a71d690c86eb763d2d70498ee3cb3d32 537 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 265 438 1.2E-25 T 22-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain TRD_RS13635 a71d690c86eb763d2d70498ee3cb3d32 537 PANTHER PTHR33392 244 517 5.1E-41 T 22-04-2016 TRD_RS06090 bad31a9a55e6d1319b436c18d8d89eaf 392 Gene3D G3DSA:3.40.50.2000 174 283 8.6E-7 T 22-04-2016 TRD_RS06090 bad31a9a55e6d1319b436c18d8d89eaf 392 SUPERFAMILY SSF53756 103 376 1.15E-33 T 22-04-2016 TRD_RS06090 bad31a9a55e6d1319b436c18d8d89eaf 392 PANTHER PTHR12526:SF407 119 381 4.8E-18 T 22-04-2016 TRD_RS06090 bad31a9a55e6d1319b436c18d8d89eaf 392 PANTHER PTHR12526 119 381 4.8E-18 T 22-04-2016 TRD_RS06090 bad31a9a55e6d1319b436c18d8d89eaf 392 Pfam PF13692 Glycosyl transferases group 1 205 346 2.6E-17 T 22-04-2016 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 SUPERFAMILY SSF82866 495 720 1.31E-25 T 22-04-2016 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 Pfam PF03176 MMPL family 45 360 8.0E-54 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 Pfam PF03176 MMPL family 389 725 1.6E-35 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 PANTHER PTHR33406 1 729 7.5E-130 T 22-04-2016 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 SUPERFAMILY SSF82866 111 331 2.35E-27 T 22-04-2016 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 Gene3D G3DSA:1.20.1640.10 502 724 1.2E-30 T 22-04-2016 TRD_RS01715 84159baa1e624d42e551b8e28da48fa3 736 Gene3D G3DSA:1.20.1640.10 135 334 4.8E-29 T 22-04-2016 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 PANTHER PTHR33317 1 133 8.6E-40 T 22-04-2016 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 Pfam PF03652 Holliday junction resolvase 1 128 1.5E-40 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 SUPERFAMILY SSF53098 1 130 5.61E-38 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 Gene3D G3DSA:3.30.420.140 1 135 9.0E-47 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 131 22.634 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 PANTHER PTHR33317:SF1 1 133 8.6E-40 T 22-04-2016 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 1 128 9.7E-34 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 TRD_RS03340 514448c43d69026e51dacbe2c3ca35d1 152 SMART SM00732 1 96 2.0E-27 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 TRD_RS07370 db58d5389cc7984d0704065ed6a56ae9 247 SUPERFAMILY SSF89392 80 243 4.71E-7 T 22-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 PANTHER PTHR31118 202 262 5.5E-35 T 22-04-2016 TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 PANTHER PTHR31118 2 164 5.5E-35 T 22-04-2016 TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 SUPERFAMILY SSF102198 4 165 3.14E-53 T 22-04-2016 TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 SUPERFAMILY SSF102198 204 261 3.14E-53 T 22-04-2016 TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 Gene3D G3DSA:3.50.30.50 4 165 6.3E-63 T 22-04-2016 TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 Gene3D G3DSA:3.50.30.50 204 263 6.3E-63 T 22-04-2016 TRD_RS02675 c22a0a22245f6cc121f5a87fd9355bba 264 Pfam PF04199 Putative cyclase 7 164 2.4E-36 T 22-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 TRD_RS03610 7a7169f5fe60ff473303d49f2cb32ab0 181 PANTHER PTHR15160 9 137 5.0E-30 T 22-04-2016 TRD_RS03610 7a7169f5fe60ff473303d49f2cb32ab0 181 SUPERFAMILY SSF103256 2 138 3.01E-44 T 22-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 TRD_RS03610 7a7169f5fe60ff473303d49f2cb32ab0 181 Pfam PF02577 Bifunctional nuclease 6 131 5.7E-44 T 22-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 TRD_RS07420 82f24183d0f74e675eca5a2944f7f5cf 429 Pfam PF05133 Phage portal protein, SPP1 Gp6-like 32 424 6.3E-20 T 22-04-2016 IPR021145 Portal protein, SPP1 Gp6-like TRD_RS06635 028cd057c277a3722ad888fe9e2423ee 383 SMART SM00933 65 342 3.1E-20 T 22-04-2016 IPR018977 NurA domain TRD_RS06635 028cd057c277a3722ad888fe9e2423ee 383 Pfam PF09376 NurA domain 66 341 2.5E-7 T 22-04-2016 IPR018977 NurA domain TRD_RS04630 340f1e0dfc3fe5151eb84828a93648ca 137 Gene3D G3DSA:3.60.15.10 52 122 6.8E-4 T 22-04-2016 IPR001279 Metallo-beta-lactamase TRD_RS04630 340f1e0dfc3fe5151eb84828a93648ca 137 Pfam PF02643 Uncharacterized ACR, COG1430 21 116 4.2E-19 T 22-04-2016 IPR003795 Protein of unknown function DUF192 TRD_RS07905 815e008377b2008e22e62b5253c12d74 291 Gene3D G3DSA:3.40.830.10 30 246 1.3E-7 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 TRD_RS07905 815e008377b2008e22e62b5253c12d74 291 SUPERFAMILY SSF53213 30 287 3.53E-22 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 TRD_RS07905 815e008377b2008e22e62b5253c12d74 291 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 33 282 6.5E-19 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 TRD_RS04960 23ea4fcae3da48605e9d951414382597 316 Pfam PF14257 Domain of unknown function (DUF4349) 48 304 3.1E-53 T 22-04-2016 IPR025645 Domain of unknown function DUF4349 TRD_RS02340 e412386f7afa472d5768c49a80297990 274 SUPERFAMILY SSF102588 7 263 1.05E-31 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS02340 e412386f7afa472d5768c49a80297990 274 PANTHER PTHR12993 9 231 1.6E-21 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS02340 e412386f7afa472d5768c49a80297990 274 PANTHER PTHR12993:SF10 9 231 1.6E-21 T 22-04-2016 TRD_RS02340 e412386f7afa472d5768c49a80297990 274 Pfam PF02585 GlcNAc-PI de-N-acetylase 10 157 4.3E-15 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related TRD_RS02340 e412386f7afa472d5768c49a80297990 274 Gene3D G3DSA:3.40.50.10320 8 260 3.8E-25 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain TRD_RS13720 30f76ac57a86ce58acca53de9cf404a0 133 Gene3D G3DSA:3.90.180.10 1 59 5.8E-7 T 22-04-2016 IPR011032 GroES-like TRD_RS13720 30f76ac57a86ce58acca53de9cf404a0 133 SUPERFAMILY SSF50129 20 65 4.38E-7 T 22-04-2016 IPR011032 GroES-like TRD_RS03580 0d83c5fb94bc2fd930c9c348687990b8 557 PIRSF PIRSF002741 8 545 1.1E-115 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 TRD_RS03580 0d83c5fb94bc2fd930c9c348687990b8 557 SUPERFAMILY SSF53850 56 540 4.89E-127 T 22-04-2016 TRD_RS03580 0d83c5fb94bc2fd930c9c348687990b8 557 Gene3D G3DSA:3.10.105.10 302 521 1.9E-59 T 22-04-2016 TRD_RS03580 0d83c5fb94bc2fd930c9c348687990b8 557 PANTHER PTHR30290 1 556 1.5E-131 T 22-04-2016 TRD_RS03580 0d83c5fb94bc2fd930c9c348687990b8 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 464 4.8E-83 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain TRD_RS03580 0d83c5fb94bc2fd930c9c348687990b8 557 Gene3D G3DSA:3.90.76.10 68 222 3.6E-42 T 22-04-2016 TRD_RS06220 00dbc247e81f6a18b6e1255a24285374 168 Gene3D G3DSA:3.30.70.560 4 151 2.6E-57 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06220 00dbc247e81f6a18b6e1255a24285374 168 SUPERFAMILY SSF55083 3 151 1.44E-54 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06220 00dbc247e81f6a18b6e1255a24285374 168 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 131 9.3E-44 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06220 00dbc247e81f6a18b6e1255a24285374 168 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 131 1.7E-37 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 TRD_RS06220 00dbc247e81f6a18b6e1255a24285374 168 PANTHER PTHR20941 3 153 2.5E-64 T 22-04-2016 TRD_RS08340 22e13177981934d8fb0ca5cb106f081a 102 PANTHER PTHR11434 5 102 1.4E-33 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 TRD_RS08340 22e13177981934d8fb0ca5cb106f081a 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 102 19.816 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 TRD_RS08340 22e13177981934d8fb0ca5cb106f081a 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 9 98 8.0E-26 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 TRD_RS00085 43d86085c276e7c7c3d0320830f5810b 355 TIGRFAM TIGR01875 cas_MJ0381: CRISPR-associated autoregulator DevR family 22 256 2.8E-27 T 22-04-2016 IPR010154 CRISPR-associated protein Cas7/Cst2/DevR TRD_RS00085 43d86085c276e7c7c3d0320830f5810b 355 Pfam PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 45 254 1.3E-9 T 22-04-2016 IPR010154 CRISPR-associated protein Cas7/Cst2/DevR TRD_RS00085 43d86085c276e7c7c3d0320830f5810b 355 TIGRFAM TIGR02585 cas_Cst2_DevR: CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP 18 342 7.6E-48 T 22-04-2016 IPR013414 CRISPR-associated protein Cas7, subtype I-B/Tneap TRD_RS00245 7df304c264321db1e3c35d950a0ddd6e 149 Gene3D G3DSA:3.40.30.10 2 73 1.8E-9 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS00245 7df304c264321db1e3c35d950a0ddd6e 149 SUPERFAMILY SSF52833 2 73 2.29E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS02055 2d206270d406ce03a081836977386de9 325 Pfam PF14257 Domain of unknown function (DUF4349) 85 299 6.4E-49 T 22-04-2016 IPR025645 Domain of unknown function DUF4349 TRD_RS06480 572513628bc55de8d45f9fbd4a52f37b 67 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 2.7E-20 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 TRD_RS06480 572513628bc55de8d45f9fbd4a52f37b 67 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 64 19.699 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 TRD_RS06480 572513628bc55de8d45f9fbd4a52f37b 67 Pfam PF02416 mttA/Hcf106 family 4 54 1.2E-20 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 TRD_RS06480 572513628bc55de8d45f9fbd4a52f37b 67 PANTHER PTHR33162 4 57 8.4E-17 T 22-04-2016 TRD_RS01625 3cb17201d8fc623ef1220154dc024141 302 PANTHER PTHR12358 7 294 1.9E-16 T 22-04-2016 TRD_RS01625 3cb17201d8fc623ef1220154dc024141 302 Pfam PF00781 Diacylglycerol kinase catalytic domain 7 113 2.4E-18 T 22-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 TRD_RS01625 3cb17201d8fc623ef1220154dc024141 302 SUPERFAMILY SSF111331 4 294 2.18E-55 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain TRD_RS13695 6573aeaeac5793b6ea71af0a6b79f1c6 781 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 221 229 - T 22-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 TRD_RS04485 720dfc9def6e81574ea54ec1ca6304d8 60 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.2E-18 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04485 720dfc9def6e81574ea54ec1ca6304d8 60 Pfam PF00831 Ribosomal L29 protein 4 60 1.5E-20 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04485 720dfc9def6e81574ea54ec1ca6304d8 60 PANTHER PTHR10916 1 60 2.7E-17 T 22-04-2016 TRD_RS04485 720dfc9def6e81574ea54ec1ca6304d8 60 SUPERFAMILY SSF46561 1 60 2.62E-18 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04485 720dfc9def6e81574ea54ec1ca6304d8 60 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.795 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS04485 720dfc9def6e81574ea54ec1ca6304d8 60 Gene3D G3DSA:1.10.287.310 1 60 5.6E-23 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 TRD_RS08215 324c6ee3a1a837271a7dc8d1d7dbc0eb 131 Pfam PF04977 Septum formation initiator 19 92 3.8E-12 T 22-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 TRD_RS08395 b9d48c91696cbaceedc8feb5d8ecac75 176 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 37 145 6.8E-11 T 22-04-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase TRD_RS06945 e41c28df8ef61e43f8217f6f81e68893 280 Gene3D G3DSA:3.40.50.880 17 260 1.8E-5 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like TRD_RS03880 8400f76ec0e399ad191cde0f04b956a9 381 SUPERFAMILY SSF82171 78 301 1.1E-7 T 22-04-2016 TRD_RS03880 8400f76ec0e399ad191cde0f04b956a9 381 Gene3D G3DSA:2.120.10.30 111 309 6.3E-6 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS03880 8400f76ec0e399ad191cde0f04b956a9 381 Gene3D G3DSA:2.120.10.30 349 363 6.3E-6 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like TRD_RS04125 6df35349fd283cac0dc902d3c4079b48 299 Pfam PF02219 Methylenetetrahydrofolate reductase 37 199 1.9E-12 T 22-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 TRD_RS04125 6df35349fd283cac0dc902d3c4079b48 299 SUPERFAMILY SSF51730 29 284 8.63E-36 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like TRD_RS04125 6df35349fd283cac0dc902d3c4079b48 299 Gene3D G3DSA:3.20.20.220 48 285 2.2E-31 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like TRD_RS01165 f61b7ab7e2c7bcb89da7d114ab8315aa 284 PANTHER PTHR21240 6 284 4.6E-67 T 22-04-2016 TRD_RS01165 f61b7ab7e2c7bcb89da7d114ab8315aa 284 PANTHER PTHR21240:SF1 6 284 4.6E-67 T 22-04-2016 TRD_RS01165 f61b7ab7e2c7bcb89da7d114ab8315aa 284 Gene3D G3DSA:3.20.20.140 6 284 2.1E-74 T 22-04-2016 TRD_RS01165 f61b7ab7e2c7bcb89da7d114ab8315aa 284 SUPERFAMILY SSF51556 7 284 7.26E-69 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS01165 f61b7ab7e2c7bcb89da7d114ab8315aa 284 Pfam PF04909 Amidohydrolase 10 284 2.6E-40 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 TRD_RS03575 6172662016b239809248d55db65d77ea 73 Pfam PF03840 Preprotein translocase SecG subunit 5 68 2.1E-14 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 TRD_RS03575 6172662016b239809248d55db65d77ea 73 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 69 8.3E-15 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 TRD_RS04935 90be0eca782804e8657b20c3f692c928 321 Gene3D G3DSA:3.20.20.140 5 320 2.8E-115 T 22-04-2016 TRD_RS04935 90be0eca782804e8657b20c3f692c928 321 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 5 316 2.4E-104 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 TRD_RS04935 90be0eca782804e8657b20c3f692c928 321 PANTHER PTHR10443 5 320 2.1E-95 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 TRD_RS04935 90be0eca782804e8657b20c3f692c928 321 SUPERFAMILY SSF51556 5 319 6.65E-90 T 22-04-2016 IPR032466 Metal-dependent hydrolase TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 Gene3D G3DSA:3.30.420.40 141 296 8.5E-53 T 22-04-2016 TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 ProSitePatterns PS01125 ROK family signature. 136 163 - T 22-04-2016 IPR000600 ROK family TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 SUPERFAMILY SSF53067 3 314 1.95E-63 T 22-04-2016 TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 Gene3D G3DSA:3.30.420.40 2 140 1.8E-39 T 22-04-2016 TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 PANTHER PTHR18964:SF123 1 312 1.6E-77 T 22-04-2016 TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 PANTHER PTHR18964 1 312 1.6E-77 T 22-04-2016 TRD_RS07515 185abe758bf8fae854a17755b3bb87ca 325 Pfam PF00480 ROK family 5 309 2.1E-64 T 22-04-2016 IPR000600 ROK family TRD_RS04520 8db69e98fbe284a3186b94f6254e7dc2 212 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 1.5E-59 T 22-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 TRD_RS04520 8db69e98fbe284a3186b94f6254e7dc2 212 PANTHER PTHR10746 1 203 4.5E-81 T 22-04-2016 IPR013005 50S ribosomal protein uL4 TRD_RS04520 8db69e98fbe284a3186b94f6254e7dc2 212 Gene3D G3DSA:3.40.1370.10 57 205 7.1E-53 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 TRD_RS04520 8db69e98fbe284a3186b94f6254e7dc2 212 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 208 33.298 T 22-04-2016 IPR013005 50S ribosomal protein uL4 TRD_RS04520 8db69e98fbe284a3186b94f6254e7dc2 212 SUPERFAMILY SSF52166 1 206 1.22E-72 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 TRD_RS04520 8db69e98fbe284a3186b94f6254e7dc2 212 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 204 9.2E-74 T 22-04-2016 IPR013005 50S ribosomal protein uL4 TRD_RS13580 8dd1b28932f76aaee51faa3748f35e1a 384 PANTHER PTHR38658:SF1 12 381 6.9E-34 T 22-04-2016 TRD_RS13580 8dd1b28932f76aaee51faa3748f35e1a 384 PANTHER PTHR38658 12 381 6.9E-34 T 22-04-2016 TRD_RS13580 8dd1b28932f76aaee51faa3748f35e1a 384 Pfam PF10128 Glucose-6-phosphate dehydrogenase subunit 65 368 1.2E-56 T 22-04-2016 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PANTHER PTHR30294:SF13 1 238 6.5E-52 T 22-04-2016 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 Pfam PF01061 ABC-2 type transporter 24 234 8.8E-40 T 22-04-2016 IPR013525 ABC-2 type transporter GO:0016020 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PIRSF PIRSF006648 2 285 2.2E-62 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 6.1E-17 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 156 180 6.1E-17 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 41 62 6.1E-17 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PRINTS PR00164 ABC-2 type transport system membrane protein signature 213 232 6.1E-17 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS02535 15a96c76b2e06e84b7bc6a6e98a33ff4 286 PANTHER PTHR30294 1 238 6.5E-52 T 22-04-2016 TRD_RS01755 04a1c168606741a15f9723043f55b1f7 445 PANTHER PTHR30508:SF0 1 443 6.8E-144 T 22-04-2016 TRD_RS01755 04a1c168606741a15f9723043f55b1f7 445 SUPERFAMILY SSF101960 15 443 3.01E-123 T 22-04-2016 TRD_RS01755 04a1c168606741a15f9723043f55b1f7 445 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 161 434 1.4E-80 T 22-04-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 TRD_RS01755 04a1c168606741a15f9723043f55b1f7 445 PANTHER PTHR30508 1 443 6.8E-144 T 22-04-2016 TRD_RS01755 04a1c168606741a15f9723043f55b1f7 445 Pfam PF01458 Uncharacterized protein family (UPF0051) 194 418 6.5E-74 T 22-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 TRD_RS06820 d99f6d0401e558e04309231526ce7625 354 Pfam PF05384 Sensor protein DegS 14 123 3.3E-11 T 22-04-2016 IPR008595 Sensor DegS GO:0007165|GO:0016301 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- TRD_RS00215 d1e1b1ed7c494b01272d21cba577940d 289 Pfam PF02674 Colicin V production protein 7 147 1.6E-14 T 22-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 TRD_RS13680 d910b51e5de21e5136f8baba8df65bdd 120 Pfam PF03779 SPW repeat 74 115 5.5E-7 T 22-04-2016 IPR005530 SPW repeat TRD_RS04850 f060e5742ea2f1db6a20435d3c76fbe7 479 Pfam PF13490 Putative zinc-finger 6 40 2.7E-12 T 22-04-2016 IPR027383 Putative zinc-finger TRD_RS05170 e12680e26fed7e19eafca2f7e75f7daa 86 Pfam PF02325 YGGT family 10 75 2.0E-6 T 22-04-2016 IPR003425 CCB3/YggT GO:0016020 TRD_RS05350 bee47da1e85b4236942f05e2de270407 240 PANTHER PTHR30294 1 240 5.1E-33 T 22-04-2016 TRD_RS05350 bee47da1e85b4236942f05e2de270407 240 PANTHER PTHR30294:SF21 1 240 5.1E-33 T 22-04-2016 TRD_RS05350 bee47da1e85b4236942f05e2de270407 240 Pfam PF01061 ABC-2 type transporter 11 208 3.2E-18 T 22-04-2016 IPR013525 ABC-2 type transporter GO:0016020 TRD_RS05350 bee47da1e85b4236942f05e2de270407 240 PIRSF PIRSF006648 1 240 2.5E-24 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 TRD_RS07695 1b5a1ff00d587e484d2b48723e634fce 295 SUPERFAMILY SSF56563 11 291 6.41E-21 T 22-04-2016 TRD_RS07695 1b5a1ff00d587e484d2b48723e634fce 295 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 18 230 1.7E-8 T 22-04-2016 IPR006444 Phage major capsid protein, HK97 TRD_RS07695 1b5a1ff00d587e484d2b48723e634fce 295 Pfam PF05065 Phage capsid family 18 289 6.1E-11 T 22-04-2016 IPR024455 Phage capsid TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 334 2.6E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 SUPERFAMILY SSF161098 198 319 1.7E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 SUPERFAMILY SSF161098 93 160 1.7E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 PANTHER PTHR30465:SF0 192 335 1.1E-124 T 22-04-2016 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 PANTHER PTHR30465:SF0 1 169 1.1E-124 T 22-04-2016 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 PANTHER PTHR30465 192 335 1.1E-124 T 22-04-2016 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 PANTHER PTHR30465 1 169 1.1E-124 T 22-04-2016 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 Gene3D G3DSA:1.10.3720.10 91 163 4.7E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05990 ebe3a7acdc52b8a1563b6ac5e8180ee5 336 Gene3D G3DSA:1.10.3720.10 201 325 4.7E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS06850 150bf93022ea829d90b0b7b5e16abe76 336 Pfam PF03747 ADP-ribosylglycohydrolase 16 300 1.1E-47 T 22-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 TRD_RS06850 150bf93022ea829d90b0b7b5e16abe76 336 SUPERFAMILY SSF101478 9 321 6.8E-58 T 22-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 TRD_RS06850 150bf93022ea829d90b0b7b5e16abe76 336 PANTHER PTHR16222:SF12 8 333 1.1E-48 T 22-04-2016 TRD_RS06850 150bf93022ea829d90b0b7b5e16abe76 336 PANTHER PTHR16222 8 333 1.1E-48 T 22-04-2016 TRD_RS06790 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 Gene3D G3DSA:3.50.30.50 2 219 1.6E-50 T 22-04-2016 TRD_RS06790 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 PANTHER PTHR31118 1 222 4.7E-33 T 22-04-2016 TRD_RS06790 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 Pfam PF04199 Putative cyclase 3 161 1.0E-21 T 22-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 TRD_RS06790 ec34e5ec0c8e1a6692d0e2acfe6ede6a 224 SUPERFAMILY SSF102198 2 218 8.5E-47 T 22-04-2016 TRD_RS03760 eeb7e244b6567defc54cc942d3b50d79 256 Gene3D G3DSA:3.60.140.10 41 255 1.4E-68 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase TRD_RS03760 eeb7e244b6567defc54cc942d3b50d79 256 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 42 253 1.2E-58 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase TRD_RS03760 eeb7e244b6567defc54cc942d3b50d79 256 SUPERFAMILY SSF64438 12 255 1.26E-65 T 22-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic TRD_RS03760 eeb7e244b6567defc54cc942d3b50d79 256 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 40 255 2.3E-47 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase TRD_RS03760 eeb7e244b6567defc54cc942d3b50d79 256 PANTHER PTHR30616 41 256 1.4E-64 T 22-04-2016 TRD_RS07980 9c97e14b478ac936b9472d704ff3f1c0 195 Gene3D G3DSA:1.10.490.10 22 120 3.0E-10 T 22-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 TRD_RS07980 9c97e14b478ac936b9472d704ff3f1c0 195 SUPERFAMILY SSF46458 12 182 3.45E-14 T 22-04-2016 IPR009050 Globin-like TRD_RS07980 9c97e14b478ac936b9472d704ff3f1c0 195 Pfam PF11563 Protoglobin 23 193 2.0E-34 T 22-04-2016 TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 SUPERFAMILY SSF48024 11 122 3.27E-38 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 Gene3D G3DSA:1.10.860.10 13 113 4.9E-36 T 22-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 SUPERFAMILY SSF52540 186 434 1.01E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 Gene3D G3DSA:3.40.50.300 174 443 1.2E-103 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 PANTHER PTHR30153 1 450 5.9E-203 T 22-04-2016 TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 Pfam PF03796 DnaB-like helicase C terminal domain 188 440 8.3E-114 T 22-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 12 442 2.4E-179 T 22-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 TRD_RS03175 205b0010357b5c53ea3dcbacc9b073c6 450 Pfam PF00772 DnaB-like helicase N terminal domain 13 113 7.2E-35 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 TRD_RS05045 8fbc4750d42eeb4e1aee22afee730943 375 Gene3D G3DSA:3.40.710.10 30 357 4.1E-75 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS05045 8fbc4750d42eeb4e1aee22afee730943 375 PANTHER PTHR22935 31 365 5.3E-60 T 22-04-2016 TRD_RS05045 8fbc4750d42eeb4e1aee22afee730943 375 Pfam PF00144 Beta-lactamase 36 353 7.6E-65 T 22-04-2016 IPR001466 Beta-lactamase-related TRD_RS05045 8fbc4750d42eeb4e1aee22afee730943 375 SUPERFAMILY SSF56601 28 359 3.76E-77 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like TRD_RS05815 984ece86a4bc825480fa0e7d520806ab 332 Pfam PF07853 Protein of unknown function (DUF1648) 241 287 3.6E-10 T 22-04-2016 IPR012867 Domain of unknown function DUF1648 TRD_RS05815 984ece86a4bc825480fa0e7d520806ab 332 Pfam PF10882 Bacterial PH domain 79 173 7.4E-7 T 22-04-2016 IPR027783 Bacterial Pleckstrin homology domain-related TRD_RS05010 f2e5ede491a79a3a5f0205822230bbd5 159 SUPERFAMILY SSF55826 8 155 2.22E-35 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 TRD_RS05010 f2e5ede491a79a3a5f0205822230bbd5 159 Pfam PF04073 Aminoacyl-tRNA editing domain 27 147 4.0E-30 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 TRD_RS05010 f2e5ede491a79a3a5f0205822230bbd5 159 PANTHER PTHR30411 3 157 4.2E-27 T 22-04-2016 TRD_RS05010 f2e5ede491a79a3a5f0205822230bbd5 159 Gene3D G3DSA:3.90.960.10 9 155 1.5E-39 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 TRD_RS04640 baa0e90fdaf2a0ed106b97628d6e6a0b 303 PANTHER PTHR35007:SF2 1 302 6.8E-66 T 22-04-2016 TRD_RS04640 baa0e90fdaf2a0ed106b97628d6e6a0b 303 PANTHER PTHR35007 1 302 6.8E-66 T 22-04-2016 TRD_RS04640 baa0e90fdaf2a0ed106b97628d6e6a0b 303 Pfam PF00482 Type II secretion system (T2SS), protein F 166 291 2.4E-18 T 22-04-2016 IPR018076 Type II secretion system F domain TRD_RS05110 dff05bceeb2eda6e2491ad98b92d23ad 479 SUPERFAMILY SSF54862 160 248 8.38E-5 T 22-04-2016 TRD_RS05110 dff05bceeb2eda6e2491ad98b92d23ad 479 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 231 242 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site TRD_RS02765 4f36b121d27fc6edcd4dd121a7e5a823 172 Pfam PF11290 Protein of unknown function (DUF3090) 5 162 6.3E-39 T 22-04-2016 IPR021441 Protein of unknown function DUF3090 TRD_RS05285 31bddc57feaec5712876594e7cb13702 300 Gene3D G3DSA:1.10.3720.10 66 298 6.0E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05285 31bddc57feaec5712876594e7cb13702 300 SUPERFAMILY SSF161098 60 289 2.35E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS05285 31bddc57feaec5712876594e7cb13702 300 PANTHER PTHR30193:SF2 14 300 7.3E-85 T 22-04-2016 TRD_RS05285 31bddc57feaec5712876594e7cb13702 300 PANTHER PTHR30193 14 300 7.3E-85 T 22-04-2016 TRD_RS05285 31bddc57feaec5712876594e7cb13702 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 289 7.9E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS00780 7919df5171dd27137e3f82735a5e4fbf 219 PANTHER PTHR10741 15 190 2.0E-23 T 22-04-2016 IPR002848 Translin GO:0043565 TRD_RS00780 7919df5171dd27137e3f82735a5e4fbf 219 SUPERFAMILY SSF74784 7 187 1.57E-23 T 22-04-2016 IPR002848 Translin GO:0043565 TRD_RS00100 29f04254ead0e6d5a590651aa630febd 172 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 13 170 1.0E-19 T 22-04-2016 IPR013343 CRISPR-associated protein Cas4 TRD_RS00100 29f04254ead0e6d5a590651aa630febd 172 PANTHER PTHR37168:SF1 1 171 3.4E-57 T 22-04-2016 TRD_RS00100 29f04254ead0e6d5a590651aa630febd 172 Pfam PF01930 Domain of unknown function DUF83 6 170 7.3E-43 T 22-04-2016 IPR022765 Dna2/Cas4, domain of unknown function DUF83 TRD_RS00100 29f04254ead0e6d5a590651aa630febd 172 PANTHER PTHR37168 1 171 3.4E-57 T 22-04-2016 TRD_RS07435 38299c94e434c2040ca7421a03b49dad 381 PANTHER PTHR12049 5 351 9.3E-64 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA TRD_RS07435 38299c94e434c2040ca7421a03b49dad 381 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 62 294 2.2E-50 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA TRD_RS07435 38299c94e434c2040ca7421a03b49dad 381 SUPERFAMILY SSF53335 4 356 5.81E-89 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase TRD_RS01680 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 SUPERFAMILY SSF88713 99 271 6.18E-46 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 TRD_RS01680 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 Pfam PF01522 Polysaccharide deacetylase 134 260 1.1E-34 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 TRD_RS01680 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 Gene3D G3DSA:3.20.20.370 108 263 2.3E-38 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 TRD_RS01680 7ec7a44ef35d3ed0d5d86c7c8b7c40d5 300 PANTHER PTHR34216 73 296 1.3E-67 T 22-04-2016 TRD_RS07685 9f2030cf602ef39ca822f6ffbd3bd7c5 594 SUPERFAMILY SSF101898 171 328 4.97E-5 T 22-04-2016 TRD_RS11115 ade85a42d0b637f65b25d26e7c65c595 259 SUPERFAMILY SSF52833 113 258 8.97E-16 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS11115 ade85a42d0b637f65b25d26e7c65c595 259 Gene3D G3DSA:3.40.30.10 109 258 9.7E-14 T 22-04-2016 IPR012336 Thioredoxin-like fold TRD_RS13420 bf139ecdf2f3952080b59f51edab4ec2 251 Pfam PF12483 E3 Ubiquitin ligase 80 238 4.0E-42 T 22-04-2016 IPR022170 Mitochondrial ubiquitin ligase activator of NFKB 1 GO:0004842|GO:0007005 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.-|UniPathway: UPA00143 TRD_RS03045 7b48419f15fb10d0c5908cfe4d7ebfd7 222 Pfam PF13197 Protein of unknown function (DUF4013) 23 184 4.8E-29 T 22-04-2016 IPR025098 Protein of unknown function DUF4013 TRD_RS07025 f301a342c7f99166f4cb687ffd5358c3 285 Pfam PF12679 ABC-2 family transporter protein 5 285 3.0E-18 T 22-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 TRD_RS02715 4938509e4934da20e437be12d9f74fb1 82 Gene3D G3DSA:1.10.760.10 3 80 7.1E-9 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS02715 4938509e4934da20e437be12d9f74fb1 82 SUPERFAMILY SSF46626 3 81 1.32E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 TRD_RS07410 b393f0e2b2fd73267addf2e2ddc7e221 489 Pfam PF03237 Terminase-like family 59 417 2.2E-8 T 22-04-2016 IPR004921 Terminase, large subunit TRD_RS06255 1ba1a4dfd23840152dabc8c2692e53c8 278 Pfam PF01925 Sulfite exporter TauE/SafE 8 270 9.2E-45 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 TRD_RS06255 1ba1a4dfd23840152dabc8c2692e53c8 278 PANTHER PTHR30269:SF23 2 278 3.3E-106 T 22-04-2016 TRD_RS06255 1ba1a4dfd23840152dabc8c2692e53c8 278 PANTHER PTHR30269 2 278 3.3E-106 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 TRD_RS08815 71881cbc121d0391b382cf1fc1f6f2d7 157 Pfam PF05163 DinB family 4 152 2.1E-15 T 22-04-2016 IPR007837 DNA damage-inducible protein DinB TRD_RS08815 71881cbc121d0391b382cf1fc1f6f2d7 157 Gene3D G3DSA:1.20.120.450 4 152 1.2E-16 T 22-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase TRD_RS08815 71881cbc121d0391b382cf1fc1f6f2d7 157 SUPERFAMILY SSF109854 1 148 1.28E-19 T 22-04-2016 TRD_RS07845 b816a0a61011ace79908136a11a0508c 299 SUPERFAMILY SSF161098 25 298 2.71E-70 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07845 b816a0a61011ace79908136a11a0508c 299 PANTHER PTHR32243:SF18 24 299 9.7E-100 T 22-04-2016 TRD_RS07845 b816a0a61011ace79908136a11a0508c 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 288 4.3E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS07845 b816a0a61011ace79908136a11a0508c 299 PANTHER PTHR32243 24 299 9.7E-100 T 22-04-2016 TRD_RS07845 b816a0a61011ace79908136a11a0508c 299 Gene3D G3DSA:1.10.3720.10 24 286 2.2E-64 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 TRD_RS10195 d746ef7712dd4524caa6c9374fc57327 70 Gene3D G3DSA:2.60.200.30 2 57 3.2E-7 T 22-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS10195 d746ef7712dd4524caa6c9374fc57327 70 SUPERFAMILY SSF111331 2 68 1.37E-9 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain TRD_RS10195 d746ef7712dd4524caa6c9374fc57327 70 Pfam PF01513 ATP-NAD kinase 2 65 5.9E-10 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 TRD_RS03190 46ebf100d1f0b28ba4984bc80493deb3 96 Pfam PF14076 Domain of unknown function (DUF4258) 1 75 1.8E-8 T 22-04-2016 IPR025354 Protein of unknown function DUF4258 TRD_RS13505 84115b6b29e9fa4b97768af2014316d4 283 Pfam PF11392 Protein of unknown function (DUF2877) 165 274 1.4E-23 T 22-04-2016 IPR021530 Protein of unknown function DUF2877 TRD_RS03485 2848242250ccdf517c3641cd67f0d2a9 92 Gene3D G3DSA:1.20.120.530 17 54 2.6E-4 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal TRD_RS02990 01a85f32ed1441d36122bd862d58c96f 315 PANTHER PTHR30606:SF2 5 284 1.7E-43 T 22-04-2016 TRD_RS02990 01a85f32ed1441d36122bd862d58c96f 315 PANTHER PTHR30606 5 284 1.7E-43 T 22-04-2016 TRD_RS02990 01a85f32ed1441d36122bd862d58c96f 315 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 284 4.6E-30 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 TRD_RS04580 05a731e8b81fb8b59687f3c1379c8801 149 PANTHER PTHR35024:SF2 17 146 5.6E-28 T 22-04-2016 TRD_RS04580 05a731e8b81fb8b59687f3c1379c8801 149 PANTHER PTHR35024 17 146 5.6E-28 T 22-04-2016 TRD_RS04580 05a731e8b81fb8b59687f3c1379c8801 149 Pfam PF04519 Polymer-forming cytoskeletal 17 113 4.6E-25 T 22-04-2016 IPR007607 Protein of unknown function DUF583 TRD_RS01160 688fdb5e0f7a6289d1ee5888b5a664af 130 Pfam PF10025 Uncharacterized conserved protein (DUF2267) 4 123 3.2E-37 T 22-04-2016 IPR018727 Protein of unknown function DUF2267 TRD_RS00055 93f505a575524279921b986f613a686f 270 Pfam PF12679 ABC-2 family transporter protein 4 267 2.1E-15 T 22-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 TRD_RS06260 904a97cf293b7747784bce1f65d80ef7 144 Pfam PF07843 Protein of unknown function (DUF1634) 27 138 1.5E-26 T 22-04-2016 IPR012861 Protein of unknown function DUF1634 TRD_RS09260 67f09ce6d290c58b3918edf8fbc7cdbc 282 SUPERFAMILY SSF58104 19 119 3.27E-5 T 22-04-2016 TRD_RS08060 457829b6a570ac874c565c1f761ba6a7 202 Pfam PF12773 Double zinc ribbon 3 52 2.5E-8 T 22-04-2016 IPR025874 Double zinc ribbon TRD_RS06085 9b274cb8233ea3dae35106989d879c83 307 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 16 292 4.2E-29 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD TRD_RS06265 5d0ed4a3d20e5fb165d7dc7b1681f1ea 166 Pfam PF07843 Protein of unknown function (DUF1634) 66 154 2.2E-6 T 22-04-2016 IPR012861 Protein of unknown function DUF1634 TRD_RS07180 c06e07131e3206b269f3dea17d2229fa 342 SUPERFAMILY SSF110296 3 337 5.23E-40 T 22-04-2016 TRD_RS07180 c06e07131e3206b269f3dea17d2229fa 342 Gene3D G3DSA:2.130.10.10 4 336 8.9E-53 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 TRD_RS05875 839c3086bc3daf1a7d38a4619b639c67 371 SUPERFAMILY SSF54197 84 212 5.1E-7 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 TRD_RS05370 d343ee137c54044471b24d6ff84514a3 158 Pfam PF14353 CpXC protein 24 94 2.2E-10 T 22-04-2016 IPR025682 CpXC domain TRD_RS03850 346c2e6e08b4d937283240c429aaec85 456 Pfam PF04932 O-Antigen ligase 257 389 3.6E-16 T 22-04-2016 IPR007016 O-antigen ligase-related TRD_RS02030 313cf59ac81bbcb45c50d577c6d28d3b 402 Pfam PF04015 Domain of unknown function (DUF362) 44 249 2.5E-27 T 22-04-2016 IPR007160 Domain of unknown function DUF362 TRD_RS00365 fd98cbd3e4e30ae4647fec7d3653bee9 297 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 44 283 2.4E-66 T 22-04-2016 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related TRD_RS01465 e616c4029f7a887a55028d02af5da12d 304 Pfam PF10778 Halocarboxylic acid dehydrogenase DehI 42 173 1.7E-29 T 22-04-2016 IPR019714 2-haloacid dehalogenase, DehI GO:0019120 TRD_RS09165 67e0caefb6f21fb54f3b80ec9c04558f 80 Pfam PF11213 Protein of unknown function (DUF3006) 8 75 1.9E-14 T 22-04-2016 IPR021377 Protein of unknown function DUF3006 TRD_RS03160 6d1fbef777d17f5c01dea04d1205dd2f 581 Gene3D G3DSA:1.25.40.10 49 73 4.1E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS03160 6d1fbef777d17f5c01dea04d1205dd2f 581 Gene3D G3DSA:1.25.40.10 147 177 4.1E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS03160 6d1fbef777d17f5c01dea04d1205dd2f 581 Gene3D G3DSA:1.25.40.10 400 564 4.1E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 TRD_RS00895 bb0e63b2f6454552dcd6e749f8b1495b 299 Pfam PF12730 ABC-2 family transporter protein 4 203 1.4E-11 T 22-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 TRD_RS13655 d669e776fc7af4cf1e0e256af9e9e1e0 177 Pfam PF07040 Protein of unknown function (DUF1326) 4 122 3.6E-25 T 22-04-2016 IPR009758 Protein of unknown function DUF1326 TRD_RS02150 4a426ac79ba44e09e8e4f0830b12aa85 464 PANTHER PTHR34856 24 464 1.6E-27 T 22-04-2016 TRD_RS08140 391d1808dea84bbe2fae7a910923065e 113 Pfam PF01594 Domain of unknown function DUF20 24 107 4.9E-8 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like TRD_RS07600 c34075947cb33ace662229b113ad72fc 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 169 1.2E-16 T 22-04-2016 IPR003772 Protein of unknown function DUF177 TRD_RS07630 b9e1a5a43e597040924448afe4b2859a 214 PANTHER PTHR35864 10 209 5.0E-34 T 22-04-2016 TRD_RS02140 0dfadf22a8287348191a164064b311ac 179 Pfam PF11821 Protein of unknown function (DUF3341) 6 165 6.7E-34 T 22-04-2016 IPR021776 Protein of unknown function DUF3341 TRD_RS07165 5f805a3405aca1b174663d121a7fb577 69 Pfam PF09851 Short C-terminal domain 37 64 7.2E-12 T 22-04-2016 IPR018649 SHOCT domain