locus-tag class description tll0002 PF13180 PDZ domain tll0007 PF07238 PilZ domain tll0007 PF03170 Bacterial cellulose synthase subunit tll0007 PF00535 Glycosyl transferase family 2 tll0013 PF07687 Peptidase dimerisation domain tll0013 PF01546 Peptidase family M20/M25/M40 tll0014 PF01928 CYTH domain tll0015 PF03055 Retinal pigment epithelial membrane protein tll0016 PF03092 BT1 family tll0019 PF02681 Divergent PAP2 family tll0020 PF00348 Polyprenyl synthetase tll0021 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain tll0021 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain tll0025 PF01475 Ferric uptake regulator family tll0032 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD tll0032 PF00132 Bacterial transferase hexapeptide (six repeats) tll0037 PF02562 PhoH-like protein tll0043 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain tll0043 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain tll0044 PF00581 Rhodanese-like domain tll0044 PF01206 Sulfurtransferase TusA tll0045 PF00361 Proton-conducting membrane transporter tll0046 PF02016 LD-carboxypeptidase N-terminal domain tll0046 PF17676 LD-carboxypeptidase C-terminal domain tll0048 PF01475 Ferric uptake regulator family tll0049 PF00905 Penicillin binding protein transpeptidase domain tll0049 PF00912 Transglycosylase tll0054 PF00625 Guanylate kinase tll0060 PF00149 Calcineurin-like phosphoesterase tll0062 PF00814 Glycoprotease family tll0065 PF05690 Thiazole biosynthesis protein ThiG tll0072 PF01594 AI-2E family transporter tll0073 PF08245 Mur ligase middle domain tll0073 PF02875 Mur ligase family, glutamate ligase domain tll0076 PF01434 Peptidase family M41 tll0076 PF17862 AAA+ lid domain tll0076 PF00004 ATPase family associated with various cellular activities (AAA) tll0076 PF06480 FtsH Extracellular tll0080 PF01702 Queuine tRNA-ribosyltransferase tll0113 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain tll0114 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tll0114 PF01348 Type II intron maturase tll0118 PF00226 DnaJ domain tll0118 PF01556 DnaJ C terminal domain tll0119 PF00482 Type II secretion system (T2SS), protein F tll0120 PF00482 Type II secretion system (T2SS), protein F tll0121 PF00437 Type II/IV secretion system protein tll0122 PF00437 Type II/IV secretion system protein tll0122 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain tll0128 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system tll0130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain tll0130 PF16582 Middle domain of thiamine pyrophosphate tll0130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain tll0131 PF00004 ATPase family associated with various cellular activities (AAA) tll0131 PF17862 AAA+ lid domain tll0131 PF06480 FtsH Extracellular tll0131 PF01434 Peptidase family M41 tll0133 PF00475 Imidazoleglycerol-phosphate dehydratase tll0139 PF07690 Major Facilitator Superfamily tll0142 PF07884 Vitamin K epoxide reductase family tll0145 PF00654 Voltage gated chloride channel tll0150 PF01494 FAD binding domain tll0154 PF00582 Universal stress protein family tll0155 PF01385 Probable transposase tll0155 PF12323 Helix-turn-helix domain tll0155 PF07282 Putative transposase DNA-binding domain tll0156 PF07282 Putative transposase DNA-binding domain tll0156 PF01385 Probable transposase tll0156 PF12323 Helix-turn-helix domain tll0158 PF00999 Sodium/hydrogen exchanger family tll0162 PF08402 TOBE domain tll0162 PF00005 ABC transporter tll0167 PF00829 Ribosomal prokaryotic L21 protein tll0169 PF02082 Transcriptional regulator tll0172 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases tll0173 PF02570 Precorrin-8X methylmutase tll0175 PF01709 Transcriptional regulator tll0178 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) tll0180 PF01634 ATP phosphoribosyltransferase tll0181 PF13393 Histidyl-tRNA synthetase tll0182 PF00226 DnaJ domain tll0182 PF00684 DnaJ central domain tll0182 PF01556 DnaJ C terminal domain tll0183 PF00551 Formyl transferase tll0183 PF01842 ACT domain tll0184 PF17760 UvrA interaction domain tll0184 PF17755 UvrA DNA-binding domain tll0185 PF00118 TCP-1/cpn60 chaperonin family tll0186 PF00166 Chaperonin 10 Kd subunit tll0187 PF00528 Binding-protein-dependent transport system inner membrane component tll0188 PF00909 Ammonium Transporter Family tll0202 PF07549 SecD/SecF GG Motif tll0202 PF02355 Protein export membrane protein tll0203 PF07549 SecD/SecF GG Motif tll0203 PF02355 Protein export membrane protein tll0204 PF00364 Biotin-requiring enzyme tll0204 PF02779 Transketolase, pyrimidine binding domain tll0204 PF02780 Transketolase, C-terminal domain tll0205 PF12323 Helix-turn-helix domain tll0205 PF01385 Probable transposase tll0205 PF07282 Putative transposase DNA-binding domain tll0211 PF02617 ATP-dependent Clp protease adaptor protein ClpS tll0212 PF00152 tRNA synthetases class II (D, K and N) tll0212 PF01336 OB-fold nucleic acid binding domain tll0214 PF00664 ABC transporter transmembrane region tll0214 PF00005 ABC transporter tll0216 PF00977 Histidine biosynthesis protein tll0218 PF14489 QueF-like protein tll0220 PF02469 Fasciclin domain tll0222 PF07282 Putative transposase DNA-binding domain tll0222 PF12323 Helix-turn-helix domain tll0222 PF01385 Probable transposase tll0223 PF06472 ABC transporter transmembrane region 2 tll0223 PF00005 ABC transporter tll0231 PF02445 Quinolinate synthetase A protein tll0232 PF01593 Flavin containing amine oxidoreductase tll0233 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase tll0233 PF01502 Phosphoribosyl-AMP cyclohydrolase tll0236 PF13537 Glutamine amidotransferase domain tll0236 PF00733 Asparagine synthase tll0251 PF01520 N-acetylmuramoyl-L-alanine amidase tll0251 PF04122 Putative cell wall binding repeat 2 tll0255 PF13520 Amino acid permease tll0256 PF01797 Transposase IS200 like tll0259 PF01765 Ribosome recycling factor tll0260 PF00696 Amino acid kinase family tll0266 PF02567 Phenazine biosynthesis-like protein tll0268 PF03741 Integral membrane protein TerC family tll0277 PF00742 Homoserine dehydrogenase tll0277 PF03447 Homoserine dehydrogenase, NAD binding domain tll0277 PF01842 ACT domain tll0280 PF00226 DnaJ domain tll0280 PF01556 DnaJ C terminal domain tll0288 PF07992 Pyridine nucleotide-disulphide oxidoreductase tll0303 PF02386 Cation transport protein tll0307 PF02861 Clp amino terminal domain, pathogenicity island component tll0307 PF17871 AAA lid domain tll0307 PF07724 AAA domain (Cdc48 subfamily) tll0307 PF10431 C-terminal, D2-small domain, of ClpB protein tll0307 PF00004 ATPase family associated with various cellular activities (AAA) tll0312 PF13361 UvrD-like helicase C-terminal domain tll0312 PF00580 UvrD/REP helicase N-terminal domain tll0314 PF00535 Glycosyl transferase family 2 tll0314 PF13181 Tetratricopeptide repeat tll0316 PF01618 MotA/TolQ/ExbB proton channel family tll0321 PF02684 Lipid-A-disaccharide synthetase tll0322 PF04107 Glutamate-cysteine ligase family 2(GCS2) tll0327 PF13439 Glycosyltransferase Family 4 tll0327 PF00534 Glycosyl transferases group 1 tll0328 PF00005 ABC transporter tll0330 PF00699 Urease beta subunit tll0331 PF01243 Pyridoxamine 5'-phosphate oxidase tll0331 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region tll0337 PF01593 Flavin containing amine oxidoreductase tll0340 PF12697 Alpha/beta hydrolase family tll0358 PF18152 DAHP synthase ferredoxin-like domain tll0358 PF00793 DAHP synthetase I family tll0365 PF01126 Heme oxygenase tll0366 PF14698 Argininosuccinate lyase C-terminal tll0366 PF00206 Lyase tll0369 PF13181 Tetratricopeptide repeat tll0369 PF00535 Glycosyl transferase family 2 tll0370 PF01565 FAD binding domain tll0370 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain tll0371 PF01225 Mur ligase family, catalytic domain tll0371 PF02875 Mur ligase family, glutamate ligase domain tll0371 PF08245 Mur ligase middle domain tll0381 PF08486 Stage II sporulation protein tll0384 PF00534 Glycosyl transferases group 1 tll0384 PF13439 Glycosyltransferase Family 4 tll0385 PF00231 ATP synthase tll0387 PF12323 Helix-turn-helix domain tll0387 PF07282 Putative transposase DNA-binding domain tll0387 PF01385 Probable transposase tll0391 PF08486 Stage II sporulation protein tll0395 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family tll0397 PF00581 Rhodanese-like domain tll0398 PF16363 GDP-mannose 4,6 dehydratase tll0400 PF01797 Transposase IS200 like tll0403 PF04029 2-phosphosulpholactate phosphatase tll0415 PF18074 Primosomal protein N C-terminal domain tll0415 PF17764 3′ DNA-binding domain (3′BD) tll0415 PF00270 DEAD/DEAH box helicase tll0415 PF00271 Helicase conserved C-terminal domain tll0415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain tll0418 PF13439 Glycosyltransferase Family 4 tll0418 PF00534 Glycosyl transferases group 1 tll0422 PF00490 Delta-aminolevulinic acid dehydratase tll0424 PF00557 Metallopeptidase family M24 tll0425 PF03441 FAD binding domain of DNA photolyase tll0425 PF00875 DNA photolyase tll0439 PF00290 Tryptophan synthase alpha chain tll0443 PF08352 Oligopeptide/dipeptide transporter, C-terminal region tll0443 PF00005 ABC transporter tll0444 PF01716 Manganese-stabilising protein / photosystem II polypeptide tll0447 PF10664 Cyanobacterial and plastid NDH-1 subunit M tll0451 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus tll0452 PF02687 FtsX-like permease family tll0452 PF18075 FtsX extracellular domain tll0453 PF00005 ABC transporter tll0454 PF03808 Glycosyl transferase WecB/TagA/CpsF family tll0456 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase tll0457 PF00483 Nucleotidyl transferase tll0458 PF16363 GDP-mannose 4,6 dehydratase tll0460 PF01168 Alanine racemase, N-terminal domain tll0460 PF00842 Alanine racemase, C-terminal domain tll0463 PF01264 Chorismate synthase tll0464 PF01521 Iron-sulphur cluster biosynthesis tll0465 PF08338 Domain of unknown function (DUF1731) tll0465 PF01370 NAD dependent epimerase/dehydratase family tll0467 PF13202 EF hand tll0467 PF00923 Transaldolase/Fructose-6-phosphate aldolase tll0468 PF07282 Putative transposase DNA-binding domain tll0468 PF01385 Probable transposase tll0468 PF12323 Helix-turn-helix domain tll0476 PF01478 Type IV leader peptidase family tll0476 PF06750 Bacterial Peptidase A24 N-terminal domain tll0480 PF00512 His Kinase A (phospho-acceptor) domain tll0480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll0487 PF00111 2Fe-2S iron-sulfur cluster binding domain tll0490 PF01458 Uncharacterized protein family (UPF0051) tll0500 PF00288 GHMP kinases N terminal domain tll0500 PF08544 GHMP kinases C terminal tll0502 PF00814 Glycoprotease family tll0506 PF00749 tRNA synthetases class I (E and Q), catalytic domain tll0511 PF00106 short chain dehydrogenase tll0512 PF12323 Helix-turn-helix domain tll0512 PF01385 Probable transposase tll0512 PF07282 Putative transposase DNA-binding domain tll0517 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion tll0518 PF09115 DNA polymerase III, delta subunit, C terminal tll0519 PF00571 CBS domain tll0519 PF01743 Poly A polymerase head domain tll0523 PF01820 D-ala D-ala ligase N-terminus tll0523 PF07478 D-ala D-ala ligase C-terminus tll0527 PF03462 PCRF domain tll0527 PF00472 RF-1 domain tll0529 PF01523 Putative modulator of DNA gyrase tll0530 PF01386 Ribosomal L25p family tll0531 PF00709 Adenylosuccinate synthetase tll0538 PF00999 Sodium/hydrogen exchanger family tll0538 PF02254 TrkA-N domain tll0539 PF10128 Glucose-6-phosphate dehydrogenase subunit tll0539 PF01471 Putative peptidoglycan binding domain tll0540 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain tll0540 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain tll0541 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain tll0552 PF00875 DNA photolyase tll0552 PF03441 FAD binding domain of DNA photolyase tll0553 PF07689 KaiB domain tll0554 PF00437 Type II/IV secretion system protein tll0559 PF00005 ABC transporter tll0559 PF00664 ABC transporter transmembrane region tll0562 PF01965 DJ-1/PfpI family tll0565 PF00850 Histone deacetylase domain tll0568 PF02895 Signal transducing histidine kinase, homodimeric domain tll0568 PF01627 Hpt domain tll0568 PF00072 Response regulator receiver domain tll0568 PF01584 CheW-like domain tll0568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll0569 PF01590 GAF domain tll0569 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain tll0571 PF00072 Response regulator receiver domain tll0572 PF00072 Response regulator receiver domain tll0572 PF14332 Domain of unknown function (DUF4388) tll0573 PF04966 Carbohydrate-selective porin, OprB family tll0573 PF00395 S-layer homology domain tll0574 PF04055 Radical SAM superfamily tll0578 PF02806 Alpha amylase, C-terminal all-beta domain tll0578 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) tll0578 PF00128 Alpha amylase, catalytic domain tll0579 PF01180 Dihydroorotate dehydrogenase tll0581 PF00005 ABC transporter tll0583 PF00391 PEP-utilising enzyme, mobile domain tll0583 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain tll0583 PF02896 PEP-utilising enzyme, TIM barrel domain tll0584 PF02824 TGS domain tll0584 PF13291 ACT domain tll0584 PF04607 Region found in RelA / SpoT proteins tll0586 PF00731 AIR carboxylase tll0590 PF08501 Shikimate dehydrogenase substrate binding domain tll0590 PF18317 Shikimate 5'-dehydrogenase C-terminal domain tll0591 PF00543 Nitrogen regulatory protein P-II tll0596 PF06463 Molybdenum Cofactor Synthesis C tll0596 PF04055 Radical SAM superfamily tll0600 PF02096 60Kd inner membrane protein tll0601 PF00825 Ribonuclease P tll0604 PF07282 Putative transposase DNA-binding domain tll0604 PF12323 Helix-turn-helix domain tll0604 PF01385 Probable transposase tll0614 PF00210 Ferritin-like domain tll0617 PF04539 Sigma-70 region 3 tll0617 PF04545 Sigma-70, region 4 tll0617 PF04542 Sigma-70 region 2 tll0617 PF00140 Sigma-70 factor, region 1.2 tll0623 PF02779 Transketolase, pyrimidine binding domain tll0623 PF13292 1-deoxy-D-xylulose-5-phosphate synthase tll0623 PF02780 Transketolase, C-terminal domain tll0627 PF00498 FHA domain tll0627 PF00990 Diguanylate cyclase, GGDEF domain tll0627 PF00563 EAL domain tll0633 PF01370 NAD dependent epimerase/dehydratase family tll0634 PF16363 GDP-mannose 4,6 dehydratase tll0639 PF01435 Peptidase family M48 tll0640 PF04998 RNA polymerase Rpb1, domain 5 tll0640 PF05000 RNA polymerase Rpb1, domain 4 tll0640 PF04983 RNA polymerase Rpb1, domain 3 tll0641 PF04983 RNA polymerase Rpb1, domain 3 tll0641 PF00623 RNA polymerase Rpb1, domain 2 tll0641 PF04997 RNA polymerase Rpb1, domain 1 tll0642 PF04560 RNA polymerase Rpb2, domain 7 tll0642 PF04565 RNA polymerase Rpb2, domain 3 tll0642 PF10385 RNA polymerase beta subunit external 1 domain tll0642 PF00562 RNA polymerase Rpb2, domain 6 tll0642 PF04561 RNA polymerase Rpb2, domain 2 tll0642 PF04563 RNA polymerase beta subunit tll0643 PF00005 ABC transporter tll0643 PF12704 MacB-like periplasmic core domain tll0643 PF02687 FtsX-like permease family tll0645 PF00529 HlyD membrane-fusion protein of T1SS tll0645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion tll0646 PF00849 RNA pseudouridylate synthase tll0647 PF01751 Toprim domain tll0647 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll0647 PF00986 DNA gyrase B subunit, carboxyl terminus tll0647 PF00204 DNA gyrase B tll0657 PF00403 Heavy-metal-associated domain tll0661 PF04055 Radical SAM superfamily tll0661 PF06968 Biotin and Thiamin Synthesis associated domain tll0662 PF03483 B3/4 domain tll0662 PF03484 tRNA synthetase B5 domain tll0662 PF03147 Ferredoxin-fold anticodon binding domain tll0662 PF01588 Putative tRNA binding domain tll0662 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain tll0663 PF01351 Ribonuclease HII tll0664 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain tll0664 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain tll0664 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain tll0665 PF01370 NAD dependent epimerase/dehydratase family tll0666 PF01979 Amidohydrolase family tll0683 PF05140 ResB-like family tll0684 PF01218 Coproporphyrinogen III oxidase tll0687 PF07282 Putative transposase DNA-binding domain tll0687 PF12323 Helix-turn-helix domain tll0687 PF01385 Probable transposase tll0697 PF13419 Haloacid dehalogenase-like hydrolase tll0698 PF00218 Indole-3-glycerol phosphate synthase tll0717 PF00342 Phosphoglucose isomerase tll0719 PF00361 Proton-conducting membrane transporter tll0720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus tll0720 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus tll0720 PF00361 Proton-conducting membrane transporter tll0730 PF01042 Endoribonuclease L-PSP tll0734 PF17862 AAA+ lid domain tll0734 PF06480 FtsH Extracellular tll0734 PF01434 Peptidase family M41 tll0734 PF00004 ATPase family associated with various cellular activities (AAA) tll0735 PF00271 Helicase conserved C-terminal domain tll0735 PF00270 DEAD/DEAH box helicase tll0735 PF17191 RecG wedge domain tll0745 PF08669 Glycine cleavage T-protein C-terminal barrel domain tll0745 PF01571 Aminomethyltransferase folate-binding domain tll0746 PF03190 Protein of unknown function, DUF255 tll0747 PF02152 Dihydroneopterin aldolase tll0748 PF03040 CemA family tll0759 PF00528 Binding-protein-dependent transport system inner membrane component tll0760 PF00117 Glutamine amidotransferase class-I tll0760 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain tll0761 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding tll0761 PF01628 HrcA protein C terminal domain tll0763 PF00534 Glycosyl transferases group 1 tll0763 PF08323 Starch synthase catalytic domain tll0768 PF00117 Glutamine amidotransferase class-I tll0768 PF06418 CTP synthase N-terminus tll0769 PF01022 Bacterial regulatory protein, arsR family tll0770 PF02310 B12 binding domain tll0770 PF13282 Domain of unknown function (DUF4070) tll0770 PF04055 Radical SAM superfamily tll0771 PF00149 Calcineurin-like phosphoesterase tll0772 PF00892 EamA-like transporter family tll0780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tll0787 PF01029 NusB family tll0790 PF00226 DnaJ domain tll0790 PF01556 DnaJ C terminal domain tll0790 PF00684 DnaJ central domain tll0791 PF00012 Hsp70 protein tll0792 PF11016 Protein of unknown function (DUF2854) tll0793 PF04461 Protein of unknown function (DUF520) tll0794 PF13458 Periplasmic binding protein tll0808 PF01430 Hsp33 protein tll0810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle tll0812 PF00085 Thioredoxin tll0815 PF08534 Redoxin tll0815 PF00462 Glutaredoxin tll0819 PF00005 ABC transporter tll0820 PF01297 Zinc-uptake complex component A periplasmic tll0824 PF00692 dUTPase tll0826 PF03485 Arginyl tRNA synthetase N terminal domain tll0826 PF05746 DALR anticodon binding domain tll0826 PF00750 tRNA synthetases class I (R) tll0831 PF04539 Sigma-70 region 3 tll0831 PF04545 Sigma-70, region 4 tll0831 PF04542 Sigma-70 region 2 tll0831 PF00140 Sigma-70 factor, region 1.2 tll0832 PF03099 Biotin/lipoate A/B protein ligase family tll0857 PF12826 Helix-hairpin-helix motif tll0857 PF00533 BRCA1 C Terminus (BRCT) domain tll0857 PF01653 NAD-dependent DNA ligase adenylation domain tll0857 PF03120 NAD-dependent DNA ligase OB-fold domain tll0857 PF03119 NAD-dependent DNA ligase C4 zinc finger domain tll0858 PF01513 ATP-NAD kinase tll0859 PF05368 NmrA-like family tll0867 PF01521 Iron-sulphur cluster biosynthesis tll0868 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain tll0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase tll0869 PF04015 Domain of unknown function (DUF362) tll0874 PF00462 Glutaredoxin tll0876 PF00672 HAMP domain tll0876 PF00072 Response regulator receiver domain tll0876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll0876 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) tll0876 PF01627 Hpt domain tll0876 PF00512 His Kinase A (phospho-acceptor) domain tll0880 PF10369 Small subunit of acetolactate synthase tll0881 PF01556 DnaJ C terminal domain tll0881 PF00684 DnaJ central domain tll0881 PF00226 DnaJ domain tll0885 PF01625 Peptide methionine sulfoxide reductase tll0887 PF00501 AMP-binding enzyme tll0887 PF13193 AMP-binding enzyme C-terminal domain tll0887 PF16177 Acetyl-coenzyme A synthetase N-terminus tll0891 PF05050 Methyltransferase FkbM domain tll0893 PF02627 Carboxymuconolactone decarboxylase family tll0895 PF04055 Radical SAM superfamily tll0899 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll0899 PF00512 His Kinase A (phospho-acceptor) domain tll0901 PF02632 BioY family tll0913 PF00266 Aminotransferase class-V tll0915 PF12706 Beta-lactamase superfamily domain tll0918 PF00561 alpha/beta hydrolase fold tll0920 PF00795 Carbon-nitrogen hydrolase tll0922 PF02547 Queuosine biosynthesis protein tll0925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll0925 PF00989 PAS fold tll0925 PF00512 His Kinase A (phospho-acceptor) domain tll0933 PF14718 Soluble lytic murein transglycosylase L domain tll0933 PF01464 Transglycosylase SLT domain tll0944 PF00132 Bacterial transferase hexapeptide (six repeats) tll0944 PF00101 Ribulose bisphosphate carboxylase, small chain tll0945 PF03319 Ethanolamine utilisation protein EutN/carboxysome tll0946 PF00936 BMC domain tll0947 PF00936 BMC domain tll0950 PF03109 ABC1 family tll0952 PF02559 CarD-like/TRCF domain tll0952 PF00270 DEAD/DEAH box helicase tll0952 PF00271 Helicase conserved C-terminal domain tll0952 PF03461 TRCF domain tll0952 PF17757 UvrB interaction domain tll0956 PF00502 Phycobilisome protein tll0957 PF00502 Phycobilisome protein tll0964 PF07282 Putative transposase DNA-binding domain tll0964 PF01385 Probable transposase tll0964 PF12323 Helix-turn-helix domain tll0970 PF00107 Zinc-binding dehydrogenase tll0970 PF08240 Alcohol dehydrogenase GroES-like domain tll0971 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 tll0971 PF00953 Glycosyl transferase family 4 tll0978 PF00438 S-adenosylmethionine synthetase, N-terminal domain tll0978 PF02772 S-adenosylmethionine synthetase, central domain tll0978 PF02773 S-adenosylmethionine synthetase, C-terminal domain tll0980 PF01812 5-formyltetrahydrofolate cyclo-ligase family tll0985 PF00571 CBS domain tll0985 PF01595 Cyclin M transmembrane N-terminal domain tll0985 PF03471 Transporter associated domain tll0987 PF03193 RsgA GTPase tll0990 PF02901 Pyruvate formate lyase-like tll0990 PF01228 Glycine radical tll0991 PF01207 Dihydrouridine synthase (Dus) tll0992 PF00535 Glycosyl transferase family 2 tll0993 PF00535 Glycosyl transferase family 2 tll0994 PF01531 Glycosyl transferase family 11 tll0995 PF01501 Glycosyl transferase family 8 tll0995 PF00535 Glycosyl transferase family 2 tll1003 PF01425 Amidase tll1011 PF08334 Type II secretion system (T2SS), protein G tll1011 PF07963 Prokaryotic N-terminal methylation motif tll1015 PF00535 Glycosyl transferase family 2 tll1019 PF07963 Prokaryotic N-terminal methylation motif tll1019 PF14245 Type IV pilin PilA tll1021 PF01584 CheW-like domain tll1021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll1021 PF00072 Response regulator receiver domain tll1021 PF01627 Hpt domain tll1022 PF01590 GAF domain tll1022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain tll1024 PF00072 Response regulator receiver domain tll1025 PF00072 Response regulator receiver domain tll1027 PF02574 Homocysteine S-methyltransferase tll1027 PF02965 Vitamin B12 dependent methionine synthase, activation domain tll1027 PF02607 B12 binding domain tll1027 PF02310 B12 binding domain tll1027 PF00809 Pterin binding enzyme tll1029 PF13460 NAD(P)H-binding tll1031 PF02441 Flavoprotein tll1033 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain tll1033 PF01522 Polysaccharide deacetylase tll1034 PF02091 Glycyl-tRNA synthetase alpha subunit tll1035 PF01507 Phosphoadenosine phosphosulfate reductase family tll1037 PF01168 Alanine racemase, N-terminal domain tll1042 PF00588 SpoU rRNA Methylase family tll1042 PF08032 RNA 2'-O ribose methyltransferase substrate binding tll1043 PF00933 Glycosyl hydrolase family 3 N terminal domain tll1043 PF01915 Glycosyl hydrolase family 3 C-terminal domain tll1044 PF14306 PUA-like domain tll1044 PF01747 ATP-sulfurylase tll1048 PF00486 Transcriptional regulatory protein, C terminal tll1048 PF00072 Response regulator receiver domain tll1049 PF00072 Response regulator receiver domain tll1049 PF00486 Transcriptional regulatory protein, C terminal tll1049 PF01627 Hpt domain tll1052 PF11780 Protein of unknown function (DUF3318) tll1057 PF00920 Dehydratase family tll1061 PF01008 Initiation factor 2 subunit family tll1077 PF00633 Helix-hairpin-helix motif tll1077 PF14815 NUDIX domain tll1077 PF00730 HhH-GPD superfamily base excision DNA repair protein tll1089 PF02657 Fe-S metabolism associated domain tll1092 PF10726 Protein of function (DUF2518) tll1105 PF00528 Binding-protein-dependent transport system inner membrane component tll1106 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain tll1106 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain tll1107 PF02660 Glycerol-3-phosphate acyltransferase tll1111 PF02237 Biotin protein ligase C terminal domain tll1111 PF03099 Biotin/lipoate A/B protein ligase family tll1126 PF01758 Sodium Bile acid symporter family tll1141 PF01797 Transposase IS200 like tll1144 PF01336 OB-fold nucleic acid binding domain tll1144 PF00152 tRNA synthetases class II (D, K and N) tll1144 PF02938 GAD domain tll1148 PF00936 BMC domain tll1149 PF03309 Type III pantothenate kinase tll1152 PF12323 Helix-turn-helix domain tll1152 PF01385 Probable transposase tll1152 PF07282 Putative transposase DNA-binding domain tll1155 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain tll1155 PF12706 Beta-lactamase superfamily domain tll1162 PF07282 Putative transposase DNA-binding domain tll1162 PF12323 Helix-turn-helix domain tll1162 PF01385 Probable transposase tll1167 PF04168 A predicted alpha-helical domain with a conserved ER motif. tll1167 PF14403 Circularly permuted ATP-grasp type 2 tll1175 PF01797 Transposase IS200 like tll1181 PF01432 Peptidase family M3 tll1182 PF01551 Peptidase family M23 tll1183 PF03717 Penicillin-binding Protein dimerisation domain tll1183 PF00905 Penicillin binding protein transpeptidase domain tll1186 PF09364 XFP N-terminal domain tll1186 PF09363 XFP C-terminal domain tll1186 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase tll1187 PF01026 TatD related DNase tll1189 PF00731 AIR carboxylase tll1191 PF00183 Hsp90 protein tll1192 PF04055 Radical SAM superfamily tll1193 PF03699 Uncharacterised protein family (UPF0182) tll1195 PF13181 Tetratricopeptide repeat tll1195 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) tll1199 PF10609 NUBPL iron-transfer P-loop NTPase tll1200 PF01370 NAD dependent epimerase/dehydratase family tll1201 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain tll1201 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain tll1201 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain tll1202 PF13439 Glycosyltransferase Family 4 tll1202 PF00534 Glycosyl transferases group 1 tll1205 PF00805 Pentapeptide repeats (8 copies) tll1205 PF00069 Protein kinase domain tll1213 PF00425 chorismate binding enzyme tll1221 PF13193 AMP-binding enzyme C-terminal domain tll1221 PF00501 AMP-binding enzyme tll1225 PF00291 Pyridoxal-phosphate dependent enzyme tll1227 PF00291 Pyridoxal-phosphate dependent enzyme tll1237 PF01380 SIS domain tll1241 PF02540 NAD synthase tll1243 PF01368 DHH family tll1243 PF10141 Single-strand DNA-specific exonuclease, C terminal domain tll1243 PF02272 DHHA1 domain tll1243 PF17768 RecJ OB domain tll1269 PF09150 Orange carotenoid protein, N-terminal tll1273 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) tll1275 PF01066 CDP-alcohol phosphatidyltransferase tll1276 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded tll1278 PF01557 Fumarylacetoacetate (FAA) hydrolase family tll1282 PF00672 HAMP domain tll1282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll1282 PF00512 His Kinase A (phospho-acceptor) domain tll1282 PF01627 Hpt domain tll1282 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) tll1282 PF00072 Response regulator receiver domain tll1283 PF13442 Cytochrome C oxidase, cbb3-type, subunit III tll1284 PF14495 Cytochrome c-550 domain tll1285 PF14495 Cytochrome c-550 domain tll1291 PF02782 FGGY family of carbohydrate kinases, C-terminal domain tll1297 PF02638 Glycosyl hydrolase-like 10 tll1298 PF00005 ABC transporter tll1299 PF02817 e3 binding domain tll1299 PF00364 Biotin-requiring enzyme tll1299 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) tll1301 PF00501 AMP-binding enzyme tll1304 PF00571 CBS domain tll1304 PF02163 Peptidase family M50 tll1307 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases tll1307 PF01077 Nitrite and sulphite reductase 4Fe-4S domain tll1309 PF01227 GTP cyclohydrolase I tll1311 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit tll1312 PF01488 Shikimate / quinate 5-dehydrogenase tll1313 PF11266 Long-chain fatty aldehyde decarbonylase tll1316 PF00365 Phosphofructokinase tll1318 PF00005 ABC transporter tll1318 PF12399 Branched-chain amino acid ATP-binding cassette transporter tll1319 PF02653 Branched-chain amino acid transport system / permease component tll1319 PF11862 Domain of unknown function (DUF3382) tll1327 PF17975 Ribonucleotide reductase alpha domain tll1329 PF00005 ABC transporter tll1329 PF00498 FHA domain tll1329 PF01061 ABC-2 type transporter tll1337 PF02654 Cobalamin-5-phosphate synthase tll1338 PF00675 Insulinase (Peptidase family M16) tll1338 PF05193 Peptidase M16 inactive domain tll1339 PF01367 5'-3' exonuclease, C-terminal SAM fold tll1339 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain tll1339 PF00476 DNA polymerase family A tll1339 PF01612 3'-5' exonuclease tll1340 PF00498 FHA domain tll1340 PF00005 ABC transporter tll1340 PF01061 ABC-2 type transporter tll1358 PF00591 Glycosyl transferase family, a/b domain tll1358 PF02885 Glycosyl transferase family, helical bundle domain tll1359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family tll1359 PF03466 LysR substrate binding domain tll1360 PF02391 MoaE protein tll1362 PF01967 MoaC family tll1362 PF12804 MobA-like NTP transferase domain tll1363 PF04055 Radical SAM superfamily tll1363 PF06463 Molybdenum Cofactor Synthesis C tll1364 PF00994 Probable molybdopterin binding domain tll1364 PF03454 MoeA C-terminal region (domain IV) tll1364 PF03453 MoeA N-terminal region (domain I and II) tll1365 PF01730 UreF tll1366 PF02814 UreE urease accessory protein, N-terminal domain tll1366 PF05194 UreE urease accessory protein, C-terminal domain tll1367 PF00512 His Kinase A (phospho-acceptor) domain tll1367 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll1367 PF00072 Response regulator receiver domain tll1367 PF09308 LuxQ, periplasmic tll1368 PF00310 Glutamine amidotransferases class-II tll1368 PF04898 Glutamate synthase central domain tll1368 PF01493 GXGXG motif tll1368 PF01645 Conserved region in glutamate synthase tll1373 PF00258 Flavodoxin tll1373 PF01613 Flavin reductase like domain tll1374 PF07282 Putative transposase DNA-binding domain tll1374 PF01385 Probable transposase tll1374 PF12323 Helix-turn-helix domain tll1375 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family tll1379 PF01797 Transposase IS200 like tll1382 PF00528 Binding-protein-dependent transport system inner membrane component tll1383 PF00005 ABC transporter tll1383 PF02687 FtsX-like permease family tll1383 PF12704 MacB-like periplasmic core domain tll1384 PF01195 Peptidyl-tRNA hydrolase tll1388 PF02392 Ycf4 tll1395 PF13614 AAA domain tll1397 PF00682 HMGL-like tll1397 PF08502 LeuA allosteric (dimerisation) domain tll1398 PF01903 CbiX tll1401 PF13230 Glutamine amidotransferases class-II tll1403 PF01070 FMN-dependent dehydrogenase tll1404 PF01494 FAD binding domain tll1405 PF16916 Dimerisation domain of Zinc Transporter tll1405 PF01545 Cation efflux family tll1406 PF03572 Peptidase family S41 tll1406 PF00595 PDZ domain tll1408 PF00696 Amino acid kinase family tll1411 PF00188 Cysteine-rich secretory protein family tll1413 PF17863 AAA lid domain tll1413 PF01078 Magnesium chelatase, subunit ChlI tll1413 PF13519 von Willebrand factor type A domain tll1418 PF01891 Cobalt uptake substrate-specific transmembrane region tll1428 PF00294 pfkB family carbohydrate kinase tll1433 PF01556 DnaJ C terminal domain tll1433 PF00226 DnaJ domain tll1433 PF00684 DnaJ central domain tll1440 PF03949 Malic enzyme, NAD binding domain tll1440 PF00390 Malic enzyme, N-terminal domain tll1451 PF00578 AhpC/TSA family tll1454 PF00578 AhpC/TSA family tll1454 PF10417 C-terminal domain of 1-Cys peroxiredoxin tll1457 PF01479 S4 domain tll1457 PF01728 FtsJ-like methyltransferase tll1462 PF01063 Amino-transferase class IV tll1465 PF00266 Aminotransferase class-V tll1466 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain tll1466 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain tll1482 PF01555 DNA methylase tll1486 PF00069 Protein kinase domain tll1488 PF00498 FHA domain tll1488 PF12773 Double zinc ribbon tll1492 PF00005 ABC transporter tll1492 PF12857 TOBE-like domain tll1495 PF02685 Glucokinase tll1496 PF01259 SAICAR synthetase tll1499 PF10674 Protein of unknown function (DUF2488) tll1504 PF00101 Ribulose bisphosphate carboxylase, small chain tll1505 PF02341 RbcX protein tll1506 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain tll1506 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain tll1511 PF17863 AAA lid domain tll1511 PF01078 Magnesium chelatase, subunit ChlI tll1515 PF04055 Radical SAM superfamily tll1519 PF02777 Iron/manganese superoxide dismutases, C-terminal domain tll1519 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain tll1525 PF13176 Tetratricopeptide repeat tll1525 PF00515 Tetratricopeptide repeat tll1534 PF10415 Fumarase C C-terminus tll1534 PF00206 Lyase tll1537 PF00498 FHA domain tll1538 PF01479 S4 domain tll1538 PF00849 RNA pseudouridylate synthase tll1539 PF01040 UbiA prenyltransferase family tll1545 PF00528 Binding-protein-dependent transport system inner membrane component tll1551 PF00502 Phycobilisome protein tll1555 PF07726 ATPase family associated with various cellular activities (AAA) tll1555 PF17863 AAA lid domain tll1556 PF01687 Riboflavin kinase tll1556 PF06574 FAD synthetase tll1558 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain tll1558 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain tll1559 PF00156 Phosphoribosyl transferase domain tll1561 PF01593 Flavin containing amine oxidoreductase tll1566 PF06827 Zinc finger found in FPG and IleRS tll1566 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain tll1566 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain tll1569 PF00793 DAHP synthetase I family tll1571 PF00005 ABC transporter tll1571 PF12399 Branched-chain amino acid ATP-binding cassette transporter tll1587 PF01926 50S ribosome-binding GTPase tll1587 PF06071 Protein of unknown function (DUF933) tll1588 PF00120 Glutamine synthetase, catalytic domain tll1588 PF03951 Glutamine synthetase, beta-Grasp domain tll1590 PF13439 Glycosyltransferase Family 4 tll1590 PF00534 Glycosyl transferases group 1 tll1591 PF13439 Glycosyltransferase Family 4 tll1596 PF00936 BMC domain tll1601 PF02322 Cytochrome bd terminal oxidase subunit II tll1602 PF01654 Cytochrome bd terminal oxidase subunit I tll1603 PF02347 Glycine cleavage system P-protein tll1604 PF08241 Methyltransferase domain tll1608 PF07992 Pyridine nucleotide-disulphide oxidoreductase tll1608 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain tll1617 PF03989 DNA gyrase C-terminal domain, beta-propeller tll1617 PF00521 DNA gyrase/topoisomerase IV, subunit A tll1618 PF00873 AcrB/AcrD/AcrF family tll1619 PF00529 HlyD membrane-fusion protein of T1SS tll1619 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion tll1622 PF05430 S-adenosyl-L-methionine-dependent methyltransferase tll1622 PF01266 FAD dependent oxidoreductase tll1624 PF07683 Cobalamin synthesis protein cobW C-terminal domain tll1624 PF02492 CobW/HypB/UreG, nucleotide-binding domain tll1625 PF02913 FAD linked oxidases, C-terminal domain tll1625 PF01565 FAD binding domain tll1629 PF02033 Ribosome-binding factor A tll1633 PF02696 Uncharacterized ACR, YdiU/UPF0061 family tll1634 PF07720 Tetratricopeptide repeat tll1634 PF01435 Peptidase family M48 tll1639 PF00753 Metallo-beta-lactamase superfamily tll1639 PF16123 Hydroxyacylglutathione hydrolase C-terminus tll1641 PF00730 HhH-GPD superfamily base excision DNA repair protein tll1641 PF00633 Helix-hairpin-helix motif tll1642 PF13180 PDZ domain tll1642 PF02163 Peptidase family M50 tll1646 PF03900 Porphobilinogen deaminase, C-terminal domain tll1646 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain tll1650 PF13545 Crp-like helix-turn-helix domain tll1650 PF00027 Cyclic nucleotide-binding domain tll1659 PF00512 His Kinase A (phospho-acceptor) domain tll1659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll1659 PF13426 PAS domain tll1659 PF00672 HAMP domain tll1663 PF13183 4Fe-4S dicluster domain tll1663 PF02754 Cysteine-rich domain tll1664 PF01565 FAD binding domain tll1665 PF00072 Response regulator receiver domain tll1665 PF00990 Diguanylate cyclase, GGDEF domain tll1667 PF00795 Carbon-nitrogen hydrolase tll1671 PF13545 Crp-like helix-turn-helix domain tll1672 PF00425 chorismate binding enzyme tll1672 PF04715 Anthranilate synthase component I, N terminal region tll1680 PF02541 Ppx/GppA phosphatase family tll1687 PF00889 Elongation factor TS tll1688 PF00318 Ribosomal protein S2 tll1692 PF04012 PspA/IM30 family tll1694 PF00355 Rieske [2Fe-2S] domain tll1695 PF14870 Photosynthesis system II assembly factor YCF48 tll1696 PF00301 Rubredoxin tll1698 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily tll1699 PF09367 CpeS-like protein tll1704 PF02527 rRNA small subunit methyltransferase G tll1706 PF04966 Carbohydrate-selective porin, OprB family tll1706 PF00395 S-layer homology domain tll1708 PF03976 Polyphosphate kinase 2 (PPK2) tll1711 PF09366 Protein of unknown function (DUF1997) tll1712 PF00528 Binding-protein-dependent transport system inner membrane component tll1713 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain tll1713 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain tll1714 PF00591 Glycosyl transferase family, a/b domain tll1714 PF02885 Glycosyl transferase family, helical bundle domain tll1716 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain tll1716 PF07685 CobB/CobQ-like glutamine amidotransferase domain tll1720 PF06969 HemN C-terminal domain tll1721 PF01126 Heme oxygenase tll1723 PF11378 Protein of unknown function (DUF3181) tll1724 PF02531 PsaD tll1726 PF08241 Methyltransferase domain tll1737 PF02021 Uncharacterised protein family UPF0102 tll1738 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain tll1738 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain tll1738 PF01488 Shikimate / quinate 5-dehydrogenase tll1742 PF00155 Aminotransferase class I and II tll1759 PF00574 Clp protease tll1771 PF02219 Methylenetetrahydrofolate reductase tll1772 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I tll1772 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain tll1772 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III tll1772 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II tll1774 PF01520 N-acetylmuramoyl-L-alanine amidase tll1774 PF08239 Bacterial SH3 domain tll1777 PF03600 Citrate transporter tll1783 PF01699 Sodium/calcium exchanger protein tll1784 PF11283 Protein of unknown function (DUF3084) tll1786 PF01975 Survival protein SurE tll1797 PF01725 Ham1 family tll1800 PF09383 NIL domain tll1800 PF00005 ABC transporter tll1801 PF09587 Bacterial capsule synthesis protein PGA_cap tll1802 PF01380 SIS domain tll1802 PF00571 CBS domain tll1804 PF01343 Peptidase family S49 tll1807 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain tll1807 PF17944 Arginine decarboxylase C-terminal helical extension tll1807 PF17810 Arginine decarboxylase helical bundle domain tll1817 PF00361 Proton-conducting membrane transporter tll1824 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain tll1824 PF00205 Thiamine pyrophosphate enzyme, central domain tll1824 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain tll1826 PF00253 Ribosomal protein S14p/S29e tll1829 PF10397 Adenylosuccinate lyase C-terminus tll1829 PF00206 Lyase tll1831 PF00563 EAL domain tll1831 PF00498 FHA domain tll1831 PF00990 Diguanylate cyclase, GGDEF domain tll1832 PF00004 ATPase family associated with various cellular activities (AAA) tll1832 PF17862 AAA+ lid domain tll1832 PF06480 FtsH Extracellular tll1832 PF01434 Peptidase family M41 tll1841 PF00005 ABC transporter tll1841 PF02687 FtsX-like permease family tll1841 PF12704 MacB-like periplasmic core domain tll1842 PF02374 Anion-transporting ATPase tll1842 PF17886 HSP20-like domain found in ArsA tll1845 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus tll1845 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term tll1851 PF07516 SecA Wing and Scaffold domain tll1851 PF01043 SecA preprotein cross-linking domain tll1851 PF07517 SecA DEAD-like domain tll1859 PF03707 Bacterial signalling protein N terminal repeat tll1859 PF00990 Diguanylate cyclase, GGDEF domain tll1859 PF00563 EAL domain tll1867 PF06949 Protein of unknown function (DUF1292) tll1870 PF00456 Transketolase, thiamine diphosphate binding domain tll1870 PF02780 Transketolase, C-terminal domain tll1870 PF02779 Transketolase, pyrimidine binding domain tll1871 PF00109 Beta-ketoacyl synthase, N-terminal domain tll1871 PF02801 Beta-ketoacyl synthase, C-terminal domain tll1881 PF01751 Toprim domain tll1881 PF01131 DNA topoisomerase tll1881 PF13368 Topoisomerase C-terminal repeat tll1883 PF00719 Inorganic pyrophosphatase tll1888 PF13411 MerR HTH family regulatory protein tll1891 PF00106 short chain dehydrogenase tll1893 PF01040 UbiA prenyltransferase family tll1894 PF02628 Cytochrome oxidase assembly protein tll1898 PF13393 Histidyl-tRNA synthetase tll1898 PF03129 Anticodon binding domain tll1899 PF02463 RecF/RecN/SMC N terminal domain tll1907 PF18331 PKHD-type hydroxylase C-terminal domain tll1907 PF13640 2OG-Fe(II) oxygenase superfamily tll1909 PF16736 Single Cache-like tll1909 PF00512 His Kinase A (phospho-acceptor) domain tll1909 PF00989 PAS fold tll1909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll1910 PF01627 Hpt domain tll1910 PF00072 Response regulator receiver domain tll1910 PF00486 Transcriptional regulatory protein, C terminal tll1911 PF01960 ArgJ family tll1912 PF00311 Phosphoenolpyruvate carboxylase tll1914 PF00485 Phosphoribulokinase / Uridine kinase family tll1920 PF00403 Heavy-metal-associated domain tll1923 PF01925 Sulfite exporter TauE/SafE tll1924 PF07992 Pyridine nucleotide-disulphide oxidoreductase tll1927 PF01668 SmpB protein tll1935 PF00202 Aminotransferase class-III tll1937 PF08529 NusA N-terminal domain tll1937 PF00575 S1 RNA binding domain tll1937 PF13184 NusA-like KH domain tll1938 PF02576 RimP N-terminal domain tll1940 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain tll1940 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain tll1944 PF01555 DNA methylase tll1956 PF03167 Uracil DNA glycosylase superfamily tll1968 PF08032 RNA 2'-O ribose methyltransferase substrate binding tll1968 PF00588 SpoU rRNA Methylase family tll1969 PF00117 Glutamine amidotransferase class-I tll1969 PF01171 PP-loop family tll1969 PF00958 GMP synthase C terminal domain tll1970 PF08264 Anticodon-binding domain of tRNA tll1970 PF10458 Valyl tRNA synthetase tRNA binding arm tll1970 PF00133 tRNA synthetases class I (I, L, M and V) tll1970 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase tll1971 PF14403 Circularly permuted ATP-grasp type 2 tll1974 PF09210 Domain of unknown function (DUF1957) tll1974 PF03065 Glycosyl hydrolase family 57 tll1975 PF01497 Periplasmic binding protein tll1983 PF02390 Putative methyltransferase tll1985 PF00909 Ammonium Transporter Family tll1987 PF01113 Dihydrodipicolinate reductase, N-terminus tll1987 PF05173 Dihydrodipicolinate reductase, C-terminus tll2004 PF12323 Helix-turn-helix domain tll2004 PF01385 Probable transposase tll2004 PF07282 Putative transposase DNA-binding domain tll2009 PF00510 Cytochrome c oxidase subunit III tll2010 PF00115 Cytochrome C and Quinol oxidase polypeptide I tll2011 PF02790 Cytochrome C oxidase subunit II, transmembrane domain tll2011 PF00116 Cytochrome C oxidase subunit II, periplasmic domain tll2021 PF00534 Glycosyl transferases group 1 tll2021 PF13579 Glycosyl transferase 4-like domain tll2030 PF01544 CorA-like Mg2+ transporter protein tll2031 PF01797 Transposase IS200 like tll2040 PF02350 UDP-N-acetylglucosamine 2-epimerase tll2043 PF01063 Amino-transferase class IV tll2045 PF04166 Pyridoxal phosphate biosynthetic protein PdxA tll2046 PF00575 S1 RNA binding domain tll2049 PF02705 K+ potassium transporter tll2050 PF00155 Aminotransferase class I and II tll2051 PF00465 Iron-containing alcohol dehydrogenase tll2053 PF01266 FAD dependent oxidoreductase tll2056 PF14579 Helix-hairpin-helix motif tll2056 PF01336 OB-fold nucleic acid binding domain tll2056 PF17657 Bacterial DNA polymerase III alpha subunit finger domain tll2056 PF07733 Bacterial DNA polymerase III alpha NTPase domain tll2056 PF02811 PHP domain tll2058 PF05670 NFACT protein RNA binding domain tll2069 PF07733 Bacterial DNA polymerase III alpha NTPase domain tll2069 PF17657 Bacterial DNA polymerase III alpha subunit finger domain tll2069 PF14579 Helix-hairpin-helix motif tll2069 PF02811 PHP domain tll2069 PF01336 OB-fold nucleic acid binding domain tll2077 PF06055 Exopolysaccharide synthesis, ExoD tll2079 PF00343 Carbohydrate phosphorylase tll2087 PF00085 Thioredoxin tll2090 PF00583 Acetyltransferase (GNAT) family tll2093 PF01979 Amidohydrolase family tll2098 PF08264 Anticodon-binding domain of tRNA tll2098 PF00133 tRNA synthetases class I (I, L, M and V) tll2098 PF13603 Leucyl-tRNA synthetase, Domain 2 tll2099 PF00072 Response regulator receiver domain tll2099 PF00486 Transcriptional regulatory protein, C terminal tll2102 PF00155 Aminotransferase class I and II tll2103 PF02272 DHHA1 domain tll2103 PF01411 tRNA synthetases class II (A) tll2103 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain tll2111 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus tll2111 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus tll2114 PF00005 ABC transporter tll2114 PF12399 Branched-chain amino acid ATP-binding cassette transporter tll2116 PF00588 SpoU rRNA Methylase family tll2117 PF00392 Bacterial regulatory proteins, gntR family tll2118 PF01472 PUA domain tll2118 PF00696 Amino acid kinase family tll2147 PF02245 Methylpurine-DNA glycosylase (MPG) tll2149 PF01556 DnaJ C terminal domain tll2149 PF00226 DnaJ domain tll2150 PF00012 Hsp70 protein tll2157 PF01790 Prolipoprotein diacylglyceryl transferase tll2158 PF00453 Ribosomal protein L20 tll2178 PF00106 short chain dehydrogenase tll2180 PF01565 FAD binding domain tll2180 PF04030 D-arabinono-1,4-lactone oxidase tll2183 PF01040 UbiA prenyltransferase family tll2190 PF00478 IMP dehydrogenase / GMP reductase domain tll2192 PF02092 Glycyl-tRNA synthetase beta subunit tll2193 PF00575 S1 RNA binding domain tll2193 PF00013 KH domain tll2193 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain tll2193 PF01138 3' exoribonuclease family, domain 1 tll2193 PF03725 3' exoribonuclease family, domain 2 tll2198 PF00583 Acetyltransferase (GNAT) family tll2201 PF00881 Nitroreductase family tll2202 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain tll2202 PF03129 Anticodon binding domain tll2202 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) tll2204 PF02132 RecR protein tll2204 PF00633 Helix-hairpin-helix motif tll2204 PF13662 Toprim domain tll2205 PF16658 Class II release factor RF3, C-terminal domain tll2205 PF00009 Elongation factor Tu GTP binding domain tll2215 PF00012 Hsp70 protein tll2219 PF01118 Semialdehyde dehydrogenase, NAD binding domain tll2219 PF02774 Semialdehyde dehydrogenase, dimerisation domain tll2222 PF03793 PASTA domain tll2222 PF00069 Protein kinase domain tll2224 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 tll2224 PF00132 Bacterial transferase hexapeptide (six repeats) tll2227 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) tll2227 PF11867 Domain of unknown function (DUF3387) tll2227 PF18766 SWI2/SNF2 ATPase tll2228 PF12161 HsdM N-terminal domain tll2228 PF02384 N-6 DNA Methylase tll2230 PF12008 Type I restriction and modification enzyme - subunit R C terminal tll2230 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) tll2230 PF18766 SWI2/SNF2 ATPase tll2237 PF01797 Transposase IS200 like tll2252 PF00815 Histidinol dehydrogenase tll2253 PF05496 Holliday junction DNA helicase RuvB P-loop domain tll2253 PF17864 RuvB AAA lid domain tll2253 PF05491 RuvB C-terminal winged helix domain tll2254 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain tll2254 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain tll2265 PF05195 Aminopeptidase P, N-terminal domain tll2265 PF00557 Metallopeptidase family M24 tll2266 PF00155 Aminotransferase class I and II tll2267 PF00216 Bacterial DNA-binding protein tll2268 PF00162 Phosphoglycerate kinase tll2272 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase tll2275 PF02887 Pyruvate kinase, alpha/beta domain tll2275 PF00391 PEP-utilising enzyme, mobile domain tll2275 PF00224 Pyruvate kinase, barrel domain tll2280 PF00211 Adenylate and Guanylate cyclase catalytic domain tll2285 PF03109 ABC1 family tll2291 PF05684 Protein of unknown function (DUF819) tll2294 PF01678 Diaminopimelate epimerase tll2296 PF01969 Protein of unknown function DUF111 tll2307 PF02578 Multi-copper polyphenol oxidoreductase laccase tll2308 PF05996 Ferredoxin-dependent bilin reductase tll2310 PF01435 Peptidase family M48 tll2310 PF13181 Tetratricopeptide repeat tll2311 PF00291 Pyridoxal-phosphate dependent enzyme tll2311 PF00571 CBS domain tll2320 PF00156 Phosphoribosyl transferase domain tll2321 PF01797 Transposase IS200 like tll2327 PF00266 Aminotransferase class-V tll2329 PF03652 Holliday junction resolvase tll2332 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain tll2332 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain tll2332 PF02142 MGS-like domain tll2345 PF00148 Nitrogenase component 1 type Oxidoreductase tll2346 PF17265 Family of unknown function (DUF5331) tll2347 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family tll2349 PF02768 DNA polymerase III beta subunit, C-terminal domain tll2349 PF02767 DNA polymerase III beta subunit, central domain tll2349 PF00712 DNA polymerase III beta subunit, N-terminal domain tll2350 PF03023 Lipid II flippase MurJ tll2351 PF00989 PAS fold tll2351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tll2351 PF16736 Single Cache-like tll2351 PF00512 His Kinase A (phospho-acceptor) domain tll2353 PF01018 GTP1/OBG tll2353 PF01926 50S ribosome-binding GTPase tll2357 PF00155 Aminotransferase class I and II tll2359 PF03764 Elongation factor G, domain IV tll2359 PF00009 Elongation factor Tu GTP binding domain tll2359 PF14492 Elongation Factor G, domain II tll2359 PF00679 Elongation factor G C-terminus tll2364 PF00486 Transcriptional regulatory protein, C terminal tll2364 PF00072 Response regulator receiver domain tll2365 PF00502 Phycobilisome protein tll2365 PF00427 Phycobilisome Linker polypeptide tll2366 PF00586 AIR synthase related protein, N-terminal domain tll2366 PF02769 AIR synthase related protein, C-terminal domain tll2369 PF00834 Ribulose-phosphate 3 epimerase family tll2372 PF00582 Universal stress protein family tll2373 PF01209 ubiE/COQ5 methyltransferase family tll2382 PF00091 Tubulin/FtsZ family, GTPase domain tll2382 PF12327 FtsZ family, C-terminal domain tll2383 PF00950 ABC 3 transport family tll2385 PF01609 Transposase DDE domain tll2390 PF05221 S-adenosyl-L-homocysteine hydrolase tll2390 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain tll2392 PF00148 Nitrogenase component 1 type Oxidoreductase tll2392 PF08369 Proto-chlorophyllide reductase 57 kD subunit tll2395 PF03853 YjeF-related protein N-terminus tll2395 PF01256 Carbohydrate kinase tll2396 PF03702 Anhydro-N-acetylmuramic acid kinase tll2398 PF01797 Transposase IS200 like tll2408 PF00890 FAD binding domain tll2408 PF02910 Fumarate reductase flavoprotein C-term tll2409 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) tll2410 PF00211 Adenylate and Guanylate cyclase catalytic domain tll2418 PF00117 Glutamine amidotransferase class-I tll2418 PF02540 NAD synthase tll2418 PF00958 GMP synthase C terminal domain tll2421 PF00149 Calcineurin-like phosphoesterase tll2425 PF04055 Radical SAM superfamily tll2427 PF00535 Glycosyl transferase family 2 tll2427 PF13181 Tetratricopeptide repeat tll2429 PF13442 Cytochrome C oxidase, cbb3-type, subunit III tll2431 PF12323 Helix-turn-helix domain tll2431 PF01385 Probable transposase tll2431 PF07282 Putative transposase DNA-binding domain tll2435 PF02153 Prephenate dehydrogenase tll2438 PF00072 Response regulator receiver domain tll2439 PF00005 ABC transporter tll2441 PF02553 Cobalt transport protein component CbiN tll2442 PF01891 Cobalt uptake substrate-specific transmembrane region tll2444 PF02463 RecF/RecN/SMC N terminal domain tll2446 PF00072 Response regulator receiver domain tll2447 PF07687 Peptidase dimerisation domain tll2447 PF01546 Peptidase family M20/M25/M40 tll2450 PF02224 Cytidylate kinase tll2450 PF02569 Pantoate-beta-alanine ligase tll2453 PF10431 C-terminal, D2-small domain, of ClpB protein tll2453 PF17871 AAA lid domain tll2453 PF07724 AAA domain (Cdc48 subfamily) tll2453 PF02861 Clp amino terminal domain, pathogenicity island component tll2453 PF00004 ATPase family associated with various cellular activities (AAA) tll2458 PF00378 Enoyl-CoA hydratase/isomerase tll2463 PF01427 D-ala-D-ala dipeptidase tll2464 PF13326 Photosystem II Pbs27 tll2466 PF08676 MutL C terminal dimerisation domain tll2466 PF01119 DNA mismatch repair protein, C-terminal domain tll2467 PF02441 Flavoprotein tll2467 PF04127 DNA / pantothenate metabolism flavoprotein tll2474 PF00582 Universal stress protein family tll2474 PF00999 Sodium/hydrogen exchanger family tll2475 PF00291 Pyridoxal-phosphate dependent enzyme tlr0001 PF00107 Zinc-binding dehydrogenase tlr0001 PF08240 Alcohol dehydrogenase GroES-like domain tlr0005 PF01979 Amidohydrolase family tlr0005 PF00449 Urease alpha-subunit, N-terminal domain tlr0010 PF00005 ABC transporter tlr0018 PF01050 Mannose-6-phosphate isomerase tlr0018 PF00483 Nucleotidyl transferase tlr0029 PF00512 His Kinase A (phospho-acceptor) domain tlr0029 PF07689 KaiB domain tlr0029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr0031 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr0036 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain tlr0036 PF02777 Iron/manganese superoxide dismutases, C-terminal domain tlr0041 PF00698 Acyl transferase domain tlr0042 PF13193 AMP-binding enzyme C-terminal domain tlr0042 PF00501 AMP-binding enzyme tlr0042 PF01553 Acyltransferase tlr0050 PF01479 S4 domain tlr0050 PF00579 tRNA synthetases class I (W and Y) tlr0051 PF05193 Peptidase M16 inactive domain tlr0051 PF00675 Insulinase (Peptidase family M16) tlr0053 PF00005 ABC transporter tlr0055 PF02472 Biopolymer transport protein ExbD/TolR tlr0056 PF01926 50S ribosome-binding GTPase tlr0056 PF07650 KH domain tlr0057 PF02492 CobW/HypB/UreG, nucleotide-binding domain tlr0058 PF13180 PDZ domain tlr0067 PF00885 6,7-dimethyl-8-ribityllumazine synthase tlr0069 PF01118 Semialdehyde dehydrogenase, NAD binding domain tlr0069 PF02774 Semialdehyde dehydrogenase, dimerisation domain tlr0081 PF00297 Ribosomal protein L3 tlr0082 PF00573 Ribosomal protein L4/L1 family tlr0083 PF00276 Ribosomal protein L23 tlr0084 PF03947 Ribosomal Proteins L2, C-terminal domain tlr0084 PF00181 Ribosomal Proteins L2, RNA binding domain tlr0086 PF00237 Ribosomal protein L22p/L17e tlr0087 PF00189 Ribosomal protein S3, C-terminal domain tlr0087 PF07650 KH domain tlr0088 PF00252 Ribosomal protein L16p/L10e tlr0091 PF00238 Ribosomal protein L14p/L23e tlr0092 PF00467 KOW motif tlr0092 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 tlr0093 PF00673 ribosomal L5P family C-terminus tlr0093 PF00281 Ribosomal protein L5 tlr0094 PF00410 Ribosomal protein S8 tlr0095 PF00347 Ribosomal protein L6 tlr0096 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast tlr0097 PF03719 Ribosomal protein S5, C-terminal domain tlr0097 PF00333 Ribosomal protein S5, N-terminal domain tlr0098 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A tlr0099 PF00344 SecY translocase tlr0103 PF00416 Ribosomal protein S13/S18 tlr0104 PF00411 Ribosomal protein S11 tlr0105 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain tlr0105 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain tlr0105 PF01000 RNA polymerase Rpb3/RpoA insert domain tlr0106 PF01196 Ribosomal protein L17 tlr0107 PF01416 tRNA pseudouridine synthase tlr0108 PF00572 Ribosomal protein L13 tlr0109 PF00380 Ribosomal protein S9/S16 tlr0111 PF04371 Porphyromonas-type peptidyl-arginine deiminase tlr0115 PF00266 Aminotransferase class-V tlr0132 PF00684 DnaJ central domain tlr0132 PF00226 DnaJ domain tlr0132 PF01556 DnaJ C terminal domain tlr0134 PF07282 Putative transposase DNA-binding domain tlr0134 PF12323 Helix-turn-helix domain tlr0134 PF01385 Probable transposase tlr0137 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD tlr0140 PF03209 PUCC protein tlr0143 PF01300 Telomere recombination tlr0144 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases tlr0147 PF00163 Ribosomal protein S4/S9 N-terminal domain tlr0147 PF01479 S4 domain tlr0148 PF03462 PCRF domain tlr0148 PF00472 RF-1 domain tlr0151 PF01676 Metalloenzyme superfamily tlr0151 PF06415 BPG-independent PGAM N-terminus (iPGM_N) tlr0152 PF00664 ABC transporter transmembrane region tlr0152 PF00005 ABC transporter tlr0174 PF17768 RecJ OB domain tlr0174 PF01368 DHH family tlr0174 PF10141 Single-strand DNA-specific exonuclease, C terminal domain tlr0174 PF02272 DHHA1 domain tlr0177 PF14437 MafB19-like deaminase tlr0179 PF03437 BtpA family tlr0190 PF08245 Mur ligase middle domain tlr0190 PF02875 Mur ligase family, glutamate ligase domain tlr0192 PF01475 Ferric uptake regulator family tlr0195 PF00512 His Kinase A (phospho-acceptor) domain tlr0195 PF00672 HAMP domain tlr0195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr0207 PF13417 Glutathione S-transferase, N-terminal domain tlr0207 PF00043 Glutathione S-transferase, C-terminal domain tlr0209 PF01029 NusB family tlr0209 PF01189 16S rRNA methyltransferase RsmB/F tlr0213 PF02503 Polyphosphate kinase middle domain tlr0213 PF17941 Polyphosphate kinase C-terminal domain 1 tlr0213 PF13089 Polyphosphate kinase N-terminal domain tlr0213 PF13090 Polyphosphate kinase C-terminal domain 2 tlr0221 PF00171 Aldehyde dehydrogenase family tlr0226 PF04055 Radical SAM superfamily tlr0227 PF00171 Aldehyde dehydrogenase family tlr0227 PF00465 Iron-containing alcohol dehydrogenase tlr0228 PF03099 Biotin/lipoate A/B protein ligase family tlr0241 PF01728 FtsJ-like methyltransferase tlr0242 PF13439 Glycosyltransferase Family 4 tlr0242 PF00534 Glycosyl transferases group 1 tlr0244 PF13537 Glutamine amidotransferase domain tlr0244 PF00733 Asparagine synthase tlr0247 PF01609 Transposase DDE domain tlr0257 PF12323 Helix-turn-helix domain tlr0257 PF07282 Putative transposase DNA-binding domain tlr0257 PF01385 Probable transposase tlr0261 PF00072 Response regulator receiver domain tlr0261 PF00486 Transcriptional regulatory protein, C terminal tlr0263 PF01145 SPFH domain / Band 7 family tlr0263 PF15975 Flotillin tlr0264 PF00140 Sigma-70 factor, region 1.2 tlr0264 PF04542 Sigma-70 region 2 tlr0264 PF04545 Sigma-70, region 4 tlr0264 PF04539 Sigma-70 region 3 tlr0265 PF12557 Cob(I)alamin adenosyltransferase N terminal tlr0265 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP tlr0267 PF00334 Nucleoside diphosphate kinase tlr0270 PF00005 ABC transporter tlr0271 PF02514 CobN/Magnesium Chelatase tlr0271 PF11965 Domain of unknown function (DUF3479) tlr0273 PF12323 Helix-turn-helix domain tlr0273 PF07282 Putative transposase DNA-binding domain tlr0273 PF01385 Probable transposase tlr0275 PF00528 Binding-protein-dependent transport system inner membrane component tlr0276 PF00528 Binding-protein-dependent transport system inner membrane component tlr0279 PF02548 Ketopantoate hydroxymethyltransferase tlr0281 PF00155 Aminotransferase class I and II tlr0283 PF04012 PspA/IM30 family tlr0284 PF02361 Cobalt transport protein tlr0285 PF04715 Anthranilate synthase component I, N terminal region tlr0285 PF00425 chorismate binding enzyme tlr0289 PF00436 Single-strand binding protein family tlr0294 PF00467 KOW motif tlr0294 PF02357 Transcription termination factor nusG tlr0295 PF03946 Ribosomal protein L11, N-terminal domain tlr0295 PF00298 Ribosomal protein L11, RNA binding domain tlr0296 PF00687 Ribosomal protein L1p/L10e family tlr0297 PF00466 Ribosomal protein L10 tlr0298 PF00542 Ribosomal protein L7/L12 C-terminal domain tlr0298 PF16320 Ribosomal protein L7/L12 dimerisation domain tlr0299 PF00075 RNase H tlr0301 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) tlr0302 PF00180 Isocitrate/isopropylmalate dehydrogenase tlr0304 PF00009 Elongation factor Tu GTP binding domain tlr0304 PF00679 Elongation factor G C-terminus tlr0304 PF03144 Elongation factor Tu domain 2 tlr0304 PF06421 GTP-binding protein LepA C-terminus tlr0308 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr0310 PF13419 Haloacid dehalogenase-like hydrolase tlr0317 PF08281 Sigma-70, region 4 tlr0317 PF04542 Sigma-70 region 2 tlr0324 PF00226 DnaJ domain tlr0324 PF00684 DnaJ central domain tlr0324 PF01556 DnaJ C terminal domain tlr0325 PF01842 ACT domain tlr0325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tlr0325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain tlr0333 PF03330 Lytic transglycolase tlr0334 PF01964 Radical SAM ThiC family tlr0335 PF01384 Phosphate transporter family tlr0339 PF01077 Nitrite and sulphite reductase 4Fe-4S domain tlr0339 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain tlr0343 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tlr0345 PF00072 Response regulator receiver domain tlr0346 PF00072 Response regulator receiver domain tlr0348 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain tlr0348 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term tlr0349 PF01584 CheW-like domain tlr0349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr0349 PF01627 Hpt domain tlr0349 PF02895 Signal transducing histidine kinase, homodimeric domain tlr0349 PF00072 Response regulator receiver domain tlr0350 PF00270 DEAD/DEAH box helicase tlr0350 PF08148 DSHCT (NUC185) domain tlr0350 PF00271 Helicase conserved C-terminal domain tlr0351 PF14251 Domain of unknown function (DUF4346) tlr0355 PF00085 Thioredoxin tlr0364 PF01523 Putative modulator of DNA gyrase tlr0374 PF01593 Flavin containing amine oxidoreductase tlr0376 PF01116 Fructose-bisphosphate aldolase class-II tlr0379 PF01169 Uncharacterized protein family UPF0016 tlr0389 PF01797 Transposase IS200 like tlr0393 PF12804 MobA-like NTP transferase domain tlr0393 PF00132 Bacterial transferase hexapeptide (six repeats) tlr0401 PF07282 Putative transposase DNA-binding domain tlr0401 PF01385 Probable transposase tlr0401 PF12323 Helix-turn-helix domain tlr0402 PF01040 UbiA prenyltransferase family tlr0405 PF10502 Signal peptidase, peptidase S26 tlr0406 PF01385 Probable transposase tlr0406 PF12323 Helix-turn-helix domain tlr0406 PF07282 Putative transposase DNA-binding domain tlr0408 PF00202 Aminotransferase class-III tlr0412 PF02080 TrkA-C domain tlr0412 PF02254 TrkA-N domain tlr0416 PF00171 Aldehyde dehydrogenase family tlr0421 PF03358 NADPH-dependent FMN reductase tlr0428 PF00636 Ribonuclease III domain tlr0429 PF12966 N-ATPase, AtpR subunit tlr0430 PF00119 ATP synthase A chain tlr0431 PF00137 ATP synthase subunit C tlr0432 PF00430 ATP synthase B/B' CF(0) tlr0433 PF00430 ATP synthase B/B' CF(0) tlr0434 PF00213 ATP synthase delta (OSCP) subunit tlr0435 PF00306 ATP synthase alpha/beta chain, C terminal domain tlr0435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain tlr0435 PF02874 ATP synthase alpha/beta family, beta-barrel domain tlr0436 PF00483 Nucleotidyl transferase tlr0437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr0437 PF00989 PAS fold tlr0437 PF00512 His Kinase A (phospho-acceptor) domain tlr0437 PF00672 HAMP domain tlr0440 PF01098 Cell cycle protein tlr0445 PF00069 Protein kinase domain tlr0449 PF00999 Sodium/hydrogen exchanger family tlr0450 PF01134 Glucose inhibited division protein A tlr0455 PF00124 Photosynthetic reaction centre protein tlr0459 PF14437 MafB19-like deaminase tlr0461 PF01177 Asp/Glu/Hydantoin racemase tlr0462 PF01027 Inhibitor of apoptosis-promoting Bax1 tlr0470 PF01797 Transposase IS200 like tlr0479 PF00202 Aminotransferase class-III tlr0481 PF07688 KaiA C-terminal domain tlr0482 PF07689 KaiB domain tlr0483 PF06745 KaiC tlr0484 PF01513 ATP-NAD kinase tlr0492 PF12697 Alpha/beta hydrolase family tlr0493 PF03912 Psb28 protein tlr0494 PF01220 Dehydroquinase class II tlr0497 PF00027 Cyclic nucleotide-binding domain tlr0497 PF13545 Crp-like helix-turn-helix domain tlr0499 PF04545 Sigma-70, region 4 tlr0499 PF04539 Sigma-70 region 3 tlr0499 PF04542 Sigma-70 region 2 tlr0499 PF00140 Sigma-70 factor, region 1.2 tlr0501 PF00950 ABC 3 transport family tlr0503 PF02082 Transcriptional regulator tlr0504 PF00291 Pyridoxal-phosphate dependent enzyme tlr0508 PF05698 Bacterial trigger factor protein (TF) C-terminus tlr0508 PF05697 Bacterial trigger factor protein (TF) tlr0509 PF00574 Clp protease tlr0510 PF07724 AAA domain (Cdc48 subfamily) tlr0510 PF10431 C-terminal, D2-small domain, of ClpB protein tlr0510 PF06689 ClpX C4-type zinc finger tlr0516 PF02887 Pyruvate kinase, alpha/beta domain tlr0516 PF00224 Pyruvate kinase, barrel domain tlr0522 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr0525 PF02874 ATP synthase alpha/beta family, beta-barrel domain tlr0525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain tlr0526 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain tlr0526 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain tlr0528 PF06480 FtsH Extracellular tlr0528 PF01434 Peptidase family M41 tlr0528 PF17862 AAA+ lid domain tlr0528 PF00004 ATPase family associated with various cellular activities (AAA) tlr0532 PF07499 RuvA, C-terminal domain tlr0532 PF01330 RuvA N terminal domain tlr0535 PF01134 Glucose inhibited division protein A tlr0535 PF13932 GidA associated domain tlr0536 PF01774 UreD urease accessory protein tlr0551 PF13581 Histidine kinase-like ATPase domain tlr0563 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases tlr0575 PF00106 short chain dehydrogenase tlr0576 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase tlr0576 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain tlr0577 PF00005 ABC transporter tlr0577 PF00664 ABC transporter transmembrane region tlr0582 PF00862 Sucrose synthase tlr0582 PF00534 Glycosyl transferases group 1 tlr0587 PF08331 Domain of unknown function (DUF1730) tlr0589 PF00072 Response regulator receiver domain tlr0589 PF00486 Transcriptional regulatory protein, C terminal tlr0592 PF01138 3' exoribonuclease family, domain 1 tlr0592 PF03725 3' exoribonuclease family, domain 2 tlr0594 PF13335 Magnesium chelatase, subunit ChlI C-terminal tlr0594 PF01078 Magnesium chelatase, subunit ChlI tlr0597 PF10150 Ribonuclease E/G family tlr0598 PF04960 Glutaminase tlr0603 PF08299 Bacterial dnaA protein helix-turn-helix tlr0603 PF00308 Bacterial dnaA protein tlr0603 PF11638 DnaA N-terminal domain tlr0605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase tlr0611 PF00483 Nucleotidyl transferase tlr0612 PF03773 Predicted permease tlr0613 PF04055 Radical SAM superfamily tlr0613 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family tlr0620 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr0622 PF02801 Beta-ketoacyl synthase, C-terminal domain tlr0622 PF00109 Beta-ketoacyl synthase, N-terminal domain tlr0626 PF02397 Bacterial sugar transferase tlr0628 PF00675 Insulinase (Peptidase family M16) tlr0628 PF05193 Peptidase M16 inactive domain tlr0652 PF00773 RNB domain tlr0655 PF00005 ABC transporter tlr0655 PF00664 ABC transporter transmembrane region tlr0656 PF00849 RNA pseudouridylate synthase tlr0656 PF01479 S4 domain tlr0658 PF00113 Enolase, C-terminal TIM barrel domain tlr0658 PF03952 Enolase, N-terminal domain tlr0659 PF00398 Ribosomal RNA adenine dimethylase tlr0667 PF00146 NADH dehydrogenase tlr0668 PF12838 4Fe-4S dicluster domain tlr0669 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 tlr0670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L tlr0671 PF13180 PDZ domain tlr0672 PF11805 Protein of unknown function (DUF3326) tlr0690 PF01409 tRNA synthetases class II core domain (F) tlr0690 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain tlr0691 PF13614 AAA domain tlr0693 PF06434 Aconitate hydratase 2 N-terminus tlr0693 PF00330 Aconitase family (aconitate hydratase) tlr0693 PF11791 Aconitate B N-terminal domain tlr0694 PF05222 Alanine dehydrogenase/PNT, N-terminal domain tlr0694 PF01262 Alanine dehydrogenase/PNT, C-terminal domain tlr0696 PF02233 NAD(P) transhydrogenase beta subunit tlr0699 PF04244 Deoxyribodipyrimidine photo-lyase-related protein tlr0700 PF04244 Deoxyribodipyrimidine photo-lyase-related protein tlr0701 PF04244 Deoxyribodipyrimidine photo-lyase-related protein tlr0704 PF01112 Asparaginase tlr0705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit tlr0708 PF02446 4-alpha-glucanotransferase tlr0710 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family tlr0711 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain tlr0711 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tlr0712 PF00764 Arginosuccinate synthase tlr0715 PF01743 Poly A polymerase head domain tlr0715 PF12627 Probable RNA and SrmB- binding site of polymerase A tlr0715 PF13735 tRNA nucleotidyltransferase domain 2 putative tlr0723 PF02575 YbaB/EbfC DNA-binding family tlr0724 PF00196 Bacterial regulatory proteins, luxR family tlr0724 PF00072 Response regulator receiver domain tlr0731 PF00223 Photosystem I psaA/psaB protein tlr0732 PF00223 Photosystem I psaA/psaB protein tlr0733 PF05552 Conserved TM helix tlr0737 PF02673 Bacitracin resistance protein BacA tlr0738 PF04545 Sigma-70, region 4 tlr0738 PF04539 Sigma-70 region 3 tlr0738 PF04542 Sigma-70 region 2 tlr0741 PF01208 Uroporphyrinogen decarboxylase (URO-D) tlr0750 PF09334 tRNA synthetases class I (M) tlr0750 PF08264 Anticodon-binding domain of tRNA tlr0758 PF00684 DnaJ central domain tlr0758 PF01556 DnaJ C terminal domain tlr0758 PF00226 DnaJ domain tlr0764 PF00171 Aldehyde dehydrogenase family tlr0765 PF00391 PEP-utilising enzyme, mobile domain tlr0765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain tlr0765 PF02896 PEP-utilising enzyme, TIM barrel domain tlr0767 PF01888 CbiD tlr0777 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) tlr0777 PF03129 Anticodon binding domain tlr0777 PF04073 Aminoacyl-tRNA editing domain tlr0782 PF00343 Carbohydrate phosphorylase tlr0783 PF07690 Major Facilitator Superfamily tlr0784 PF01761 3-dehydroquinate synthase tlr0796 PF00033 Cytochrome b/b6/petB tlr0797 PF00032 Cytochrome b(C-terminal)/b6/petD tlr0800 PF16124 RecQ zinc-binding tlr0800 PF00271 Helicase conserved C-terminal domain tlr0800 PF00270 DEAD/DEAH box helicase tlr0803 PF13419 Haloacid dehalogenase-like hydrolase tlr0806 PF01553 Acyltransferase tlr0809 PF03819 MazG nucleotide pyrophosphohydrolase domain tlr0818 PF01916 Deoxyhypusine synthase tlr0821 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD tlr0823 PF10396 GTP-binding protein TrmE N-terminus tlr0823 PF01926 50S ribosome-binding GTPase tlr0823 PF12631 MnmE helical domain tlr0829 PF12794 Mechanosensitive ion channel inner membrane domain 1 tlr0829 PF00924 Mechanosensitive ion channel tlr0829 PF12795 Mechanosensitive ion channel porin domain tlr0833 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus tlr0833 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein tlr0838 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ tlr0843 PF00132 Bacterial transferase hexapeptide (six repeats) tlr0844 PF02504 Fatty acid synthesis protein tlr0845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III tlr0845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal tlr0850 PF00682 HMGL-like tlr0850 PF08502 LeuA allosteric (dimerisation) domain tlr0851 PF00132 Bacterial transferase hexapeptide (six repeats) tlr0851 PF06426 Serine acetyltransferase, N-terminal tlr0861 PF03588 Leucyl/phenylalanyl-tRNA protein transferase tlr0873 PF00011 Hsp20/alpha crystallin family tlr0878 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal tlr0878 PF01926 50S ribosome-binding GTPase tlr0882 PF01202 Shikimate kinase tlr0890 PF00005 ABC transporter tlr0892 PF00005 ABC transporter tlr0898 PF01121 Dephospho-CoA kinase tlr0900 PF02514 CobN/Magnesium Chelatase tlr0904 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus tlr0904 PF00361 Proton-conducting membrane transporter tlr0904 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus tlr0905 PF00361 Proton-conducting membrane transporter tlr0908 PF02951 Prokaryotic glutathione synthetase, N-terminal domain tlr0908 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain tlr0909 PF00330 Aconitase family (aconitate hydratase) tlr0911 PF00563 EAL domain tlr0911 PF03707 Bacterial signalling protein N terminal repeat tlr0911 PF00990 Diguanylate cyclase, GGDEF domain tlr0924 PF00563 EAL domain tlr0924 PF00360 Phytochrome region tlr0924 PF00990 Diguanylate cyclase, GGDEF domain tlr0924 PF01590 GAF domain tlr0926 PF08352 Oligopeptide/dipeptide transporter, C-terminal region tlr0926 PF00005 ABC transporter tlr0927 PF00459 Inositol monophosphatase family tlr0928 PF00448 SRP54-type protein, GTPase domain tlr0928 PF02881 SRP54-type protein, helical bundle domain tlr0930 PF00155 Aminotransferase class I and II tlr0942 PF05958 tRNA (Uracil-5-)-methyltransferase tlr0942 PF01938 TRAM domain tlr0951 PF04321 RmlD substrate binding domain tlr0953 PF00902 Sec-independent protein translocase protein (TatC) tlr0954 PF00936 BMC domain tlr0959 PF00355 Rieske [2Fe-2S] domain tlr0960 PF16639 Apocytochrome F, N-terminal tlr0960 PF01333 Apocytochrome F, C-terminal tlr0961 PF01926 50S ribosome-binding GTPase tlr0961 PF10396 GTP-binding protein TrmE N-terminus tlr0961 PF12631 MnmE helical domain tlr0962 PF00664 ABC transporter transmembrane region tlr0962 PF00005 ABC transporter tlr0963 PF13614 AAA domain tlr0966 PF00121 Triosephosphate isomerase tlr0969 PF06725 3D domain tlr0969 PF03562 MltA specific insert domain tlr0974 PF00092 von Willebrand factor type A domain tlr0979 PF02754 Cysteine-rich domain tlr0981 PF00547 Urease, gamma subunit tlr0982 PF00291 Pyridoxal-phosphate dependent enzyme tlr0996 PF04551 GcpE protein tlr0997 PF01230 HIT domain tlr0998 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr1005 PF10396 GTP-binding protein TrmE N-terminus tlr1005 PF12631 MnmE helical domain tlr1005 PF01926 50S ribosome-binding GTPase tlr1018 PF01022 Bacterial regulatory protein, arsR family tlr1040 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain tlr1040 PF13288 DXP reductoisomerase C-terminal domain tlr1040 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase tlr1041 PF02401 LytB protein tlr1045 PF08241 Methyltransferase domain tlr1045 PF12697 Alpha/beta hydrolase family tlr1047 PF00534 Glycosyl transferases group 1 tlr1047 PF00862 Sucrose synthase tlr1050 PF00421 Photosystem II protein tlr1054 PF00248 Aldo/keto reductase family tlr1056 PF02571 Precorrin-6x reductase CbiJ/CobK tlr1065 PF01782 RimM N-terminal domain tlr1065 PF05239 PRC-barrel domain tlr1066 PF04760 Translation initiation factor IF-2, N-terminal region tlr1066 PF11987 Translation-initiation factor 2 tlr1066 PF00009 Elongation factor Tu GTP binding domain tlr1067 PF00497 Bacterial extracellular solute-binding proteins, family 3 tlr1070 PF10017 Histidine-specific methyltransferase, SAM-dependent tlr1071 PF00574 Clp protease tlr1073 PF16166 Chloroplast import apparatus Tic20-like tlr1076 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase tlr1079 PF01791 DeoC/LacD family aldolase tlr1083 PF00570 HRDC domain tlr1083 PF01612 3'-5' exonuclease tlr1088 PF00753 Metallo-beta-lactamase superfamily tlr1088 PF01613 Flavin reductase like domain tlr1090 PF08267 Cobalamin-independent synthase, N-terminal domain tlr1090 PF01717 Cobalamin-independent synthase, Catalytic domain tlr1098 PF00069 Protein kinase domain tlr1098 PF00805 Pentapeptide repeats (8 copies) tlr1102 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase tlr1103 PF18073 Rubredoxin metal binding domain tlr1103 PF06745 KaiC tlr1113 PF12323 Helix-turn-helix domain tlr1113 PF01385 Probable transposase tlr1113 PF07282 Putative transposase DNA-binding domain tlr1118 PF01348 Type II intron maturase tlr1118 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr1121 PF02653 Branched-chain amino acid transport system / permease component tlr1122 PF02653 Branched-chain amino acid transport system / permease component tlr1123 PF00005 ABC transporter tlr1123 PF12399 Branched-chain amino acid ATP-binding cassette transporter tlr1124 PF00005 ABC transporter tlr1127 PF12323 Helix-turn-helix domain tlr1127 PF01385 Probable transposase tlr1127 PF07282 Putative transposase DNA-binding domain tlr1128 PF00069 Protein kinase domain tlr1128 PF00805 Pentapeptide repeats (8 copies) tlr1130 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N tlr1132 PF12169 DNA polymerase III subunits gamma and tau domain III tlr1134 PF11264 Thylakoid formation protein tlr1136 PF07992 Pyridine nucleotide-disulphide oxidoreductase tlr1137 PF02075 Crossover junction endodeoxyribonuclease RuvC tlr1142 PF07282 Putative transposase DNA-binding domain tlr1142 PF12323 Helix-turn-helix domain tlr1142 PF01385 Probable transposase tlr1146 PF00924 Mechanosensitive ion channel tlr1151 PF00528 Binding-protein-dependent transport system inner membrane component tlr1151 PF12911 N-terminal TM domain of oligopeptide transport permease C tlr1153 PF00072 Response regulator receiver domain tlr1153 PF00486 Transcriptional regulatory protein, C terminal tlr1157 PF00561 alpha/beta hydrolase fold tlr1158 PF00990 Diguanylate cyclase, GGDEF domain tlr1158 PF07694 5TMR of 5TMR-LYT tlr1159 PF00873 AcrB/AcrD/AcrF family tlr1161 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) tlr1165 PF01467 Cytidylyltransferase-like tlr1169 PF00676 Dehydrogenase E1 component tlr1171 PF13580 SIS domain tlr1174 PF13378 Enolase C-terminal domain-like tlr1176 PF07282 Putative transposase DNA-binding domain tlr1176 PF12323 Helix-turn-helix domain tlr1176 PF01385 Probable transposase tlr1177 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain tlr1177 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family tlr1178 PF01467 Cytidylyltransferase-like tlr1180 PF02540 NAD synthase tlr1180 PF00795 Carbon-nitrogen hydrolase tlr1185 PF00977 Histidine biosynthesis protein tlr1194 PF00578 AhpC/TSA family tlr1197 PF00528 Binding-protein-dependent transport system inner membrane component tlr1198 PF00578 AhpC/TSA family tlr1206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family tlr1206 PF03466 LysR substrate binding domain tlr1210 PF00990 Diguanylate cyclase, GGDEF domain tlr1211 PF00970 Oxidoreductase FAD-binding domain tlr1211 PF01383 CpcD/allophycocyanin linker domain tlr1211 PF00175 Oxidoreductase NAD-binding domain tlr1214 PF01641 SelR domain tlr1215 PF00512 His Kinase A (phospho-acceptor) domain tlr1215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr1215 PF00672 HAMP domain tlr1215 PF00072 Response regulator receiver domain tlr1215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) tlr1215 PF01627 Hpt domain tlr1216 PF04472 Cell division protein SepF tlr1217 PF14748 Pyrroline-5-carboxylate reductase dimerisation tlr1217 PF03807 NADP oxidoreductase coenzyme F420-dependent tlr1219 PF00701 Dihydrodipicolinate synthetase family tlr1220 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain tlr1220 PF17770 Ribonuclease J C-terminal domain tlr1220 PF00753 Metallo-beta-lactamase superfamily tlr1224 PF00690 Cation transporter/ATPase, N-terminus tlr1224 PF00689 Cation transporting ATPase, C-terminus tlr1228 PF00300 Histidine phosphatase superfamily (branch 1) tlr1233 PF00962 Adenosine/AMP deaminase tlr1234 PF00694 Aconitase C-terminal domain tlr1236 PF00111 2Fe-2S iron-sulfur cluster binding domain tlr1239 PF08245 Mur ligase middle domain tlr1239 PF01225 Mur ligase family, catalytic domain tlr1239 PF02875 Mur ligase family, glutamate ligase domain tlr1246 PF00395 S-layer homology domain tlr1246 PF04966 Carbohydrate-selective porin, OprB family tlr1250 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF tlr1250 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF tlr1250 PF01189 16S rRNA methyltransferase RsmB/F tlr1252 PF11897 Protein of unknown function (DUF3417) tlr1252 PF00343 Carbohydrate phosphorylase tlr1253 PF00005 ABC transporter tlr1253 PF00498 FHA domain tlr1253 PF01061 ABC-2 type transporter tlr1257 PF13380 CoA binding domain tlr1257 PF00583 Acetyltransferase (GNAT) family tlr1257 PF13607 Succinyl-CoA ligase like flavodoxin domain tlr1258 PF02222 ATP-grasp domain tlr1258 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain tlr1261 PF00528 Binding-protein-dependent transport system inner membrane component tlr1263 PF00072 Response regulator receiver domain tlr1263 PF00486 Transcriptional regulatory protein, C terminal tlr1266 PF00300 Histidine phosphatase superfamily (branch 1) tlr1279 PF01250 Ribosomal protein S6 tlr1281 PF01048 Phosphorylase superfamily tlr1287 PF00483 Nucleotidyl transferase tlr1288 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit tlr1290 PF01926 50S ribosome-binding GTPase tlr1290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal tlr1294 PF08207 Elongation factor P (EF-P) KOW-like domain tlr1294 PF01132 Elongation factor P (EF-P) OB domain tlr1294 PF09285 Elongation factor P, C-terminal tlr1295 PF00364 Biotin-requiring enzyme tlr1296 PF00205 Thiamine pyrophosphate enzyme, central domain tlr1296 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain tlr1296 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain tlr1302 PF02545 Maf-like protein tlr1303 PF01245 Ribosomal protein L19 tlr1314 PF01025 GrpE tlr1315 PF00919 Uncharacterized protein family UPF0004 tlr1315 PF04055 Radical SAM superfamily tlr1315 PF01938 TRAM domain tlr1317 PF08275 DNA primase catalytic core, N-terminal domain tlr1317 PF10410 DnaB-helicase binding domain of primase tlr1317 PF01807 CHC2 zinc finger tlr1326 PF00805 Pentapeptide repeats (8 copies) tlr1326 PF00069 Protein kinase domain tlr1328 PF00202 Aminotransferase class-III tlr1330 PF00486 Transcriptional regulatory protein, C terminal tlr1330 PF00072 Response regulator receiver domain tlr1331 PF00155 Aminotransferase class I and II tlr1343 PF05523 WxcM-like, C-terminal tlr1344 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family tlr1346 PF00535 Glycosyl transferase family 2 tlr1349 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain tlr1349 PF01077 Nitrite and sulphite reductase 4Fe-4S domain tlr1351 PF00528 Binding-protein-dependent transport system inner membrane component tlr1352 PF00005 ABC transporter tlr1354 PF00005 ABC transporter tlr1355 PF00384 Molybdopterin oxidoreductase tlr1355 PF01568 Molydopterin dinucleotide binding domain tlr1355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain tlr1369 PF00521 DNA gyrase/topoisomerase IV, subunit A tlr1369 PF03989 DNA gyrase C-terminal domain, beta-propeller tlr1370 PF01370 NAD dependent epimerase/dehydratase family tlr1377 PF02910 Fumarate reductase flavoprotein C-term tlr1377 PF00890 FAD binding domain tlr1378 PF00999 Sodium/hydrogen exchanger family tlr1378 PF02080 TrkA-C domain tlr1378 PF02254 TrkA-N domain tlr1380 PF07282 Putative transposase DNA-binding domain tlr1380 PF12323 Helix-turn-helix domain tlr1380 PF01385 Probable transposase tlr1389 PF00004 ATPase family associated with various cellular activities (AAA) tlr1389 PF02861 Clp amino terminal domain, pathogenicity island component tlr1389 PF10431 C-terminal, D2-small domain, of ClpB protein tlr1389 PF07724 AAA domain (Cdc48 subfamily) tlr1389 PF17871 AAA lid domain tlr1392 PF02633 Creatinine amidohydrolase tlr1393 PF12697 Alpha/beta hydrolase family tlr1412 PF00118 TCP-1/cpn60 chaperonin family tlr1423 PF01738 Dienelactone hydrolase family tlr1426 PF02915 Rubrerythrin tlr1429 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 tlr1430 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit tlr1431 PF17782 DprA winged helix domain tlr1431 PF02481 DNA recombination-mediator protein A tlr1434 PF03808 Glycosyl transferase WecB/TagA/CpsF family tlr1436 PF08240 Alcohol dehydrogenase GroES-like domain tlr1436 PF00107 Zinc-binding dehydrogenase tlr1437 PF10693 Protein of unknown function (DUF2499) tlr1438 PF03471 Transporter associated domain tlr1438 PF00999 Sodium/hydrogen exchanger family tlr1445 PF02405 Permease MlaE tlr1448 PF07670 Nucleoside recognition tlr1448 PF07664 Ferrous iron transport protein B C terminus tlr1448 PF02421 Ferrous iron transport protein B tlr1449 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases tlr1460 PF00069 Protein kinase domain tlr1468 PF08865 Domain of unknown function (DUF1830) tlr1471 PF00117 Glutamine amidotransferase class-I tlr1471 PF02885 Glycosyl transferase family, helical bundle domain tlr1471 PF00591 Glycosyl transferase family, a/b domain tlr1473 PF13732 Domain of unknown function (DUF4162) tlr1473 PF00005 ABC transporter tlr1477 PF00124 Photosynthetic reaction centre protein tlr1489 PF01385 Probable transposase tlr1489 PF07282 Putative transposase DNA-binding domain tlr1489 PF12323 Helix-turn-helix domain tlr1490 PF00436 Single-strand binding protein family tlr1491 PF17092 Penicillin-binding protein OB-like domain tlr1491 PF00905 Penicillin binding protein transpeptidase domain tlr1491 PF00912 Transglycosylase tlr1498 PF00400 WD domain, G-beta repeat tlr1503 PF08264 Anticodon-binding domain of tRNA tlr1503 PF00133 tRNA synthetases class I (I, L, M and V) tlr1503 PF10458 Valyl tRNA synthetase tRNA binding arm tlr1507 PF01926 50S ribosome-binding GTPase tlr1513 PF05175 Methyltransferase small domain tlr1514 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases tlr1520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III tlr1520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain tlr1520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II tlr1520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I tlr1522 PF00809 Pterin binding enzyme tlr1526 PF00582 Universal stress protein family tlr1530 PF00421 Photosystem II protein tlr1532 PF00300 Histidine phosphatase superfamily (branch 1) tlr1536 PF00117 Glutamine amidotransferase class-I tlr1540 PF00805 Pentapeptide repeats (8 copies) tlr1540 PF00069 Protein kinase domain tlr1546 PF14572 Phosphoribosyl synthetase-associated domain tlr1546 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase tlr1547 PF02142 MGS-like domain tlr1547 PF01808 AICARFT/IMPCHase bienzyme tlr1552 PF02403 Seryl-tRNA synthetase N-terminal domain tlr1552 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) tlr1553 PF02875 Mur ligase family, glutamate ligase domain tlr1553 PF01225 Mur ligase family, catalytic domain tlr1553 PF08245 Mur ligase middle domain tlr1564 PF00919 Uncharacterized protein family UPF0004 tlr1564 PF18693 TRAM domain tlr1564 PF04055 Radical SAM superfamily tlr1568 PF01740 STAS domain tlr1577 PF02325 YGGT family tlr1578 PF02086 D12 class N6 adenine-specific DNA methyltransferase tlr1583 PF01098 Cell cycle protein tlr1585 PF02130 Uncharacterized protein family UPF0054 tlr1586 PF01219 Prokaryotic diacylglycerol kinase tlr1593 PF00294 pfkB family carbohydrate kinase tlr1593 PF01467 Cytidylyltransferase-like tlr1594 PF16416 ARM-like repeat domain, GUN4-N terminal tlr1594 PF05419 GUN4-like tlr1597 PF04055 Radical SAM superfamily tlr1600 PF00180 Isocitrate/isopropylmalate dehydrogenase tlr1606 PF01509 TruB family pseudouridylate synthase (N terminal domain) tlr1607 PF03572 Peptidase family S41 tlr1607 PF00595 PDZ domain tlr1611 PF01746 tRNA (Guanine-1)-methyltransferase tlr1612 PF08448 PAS fold tlr1612 PF08447 PAS fold tlr1612 PF00990 Diguanylate cyclase, GGDEF domain tlr1612 PF00563 EAL domain tlr1613 PF00176 SNF2 family N-terminal domain tlr1613 PF12419 SNF2 Helicase protein tlr1613 PF00271 Helicase conserved C-terminal domain tlr1615 PF01578 Cytochrome C assembly protein tlr1616 PF01171 PP-loop family tlr1616 PF09179 TilS substrate binding domain tlr1620 PF05198 Translation initiation factor IF-3, N-terminal domain tlr1620 PF00707 Translation initiation factor IF-3, C-terminal domain tlr1626 PF00753 Metallo-beta-lactamase superfamily tlr1627 PF11127 Protein of unknown function (DUF2892) tlr1627 PF00581 Rhodanese-like domain tlr1628 PF01925 Sulfite exporter TauE/SafE tlr1630 PF00124 Photosynthetic reaction centre protein tlr1631 PF00421 Photosystem II protein tlr1636 PF00459 Inositol monophosphatase family tlr1637 PF13180 PDZ domain tlr1640 PF02086 D12 class N6 adenine-specific DNA methyltransferase tlr1643 PF01039 Carboxyl transferase domain tlr1643 PF17848 Acetyl-coA carboxylase zinc finger domain tlr1649 PF00664 ABC transporter transmembrane region tlr1649 PF00005 ABC transporter tlr1656 PF00111 2Fe-2S iron-sulfur cluster binding domain tlr1657 PF00459 Inositol monophosphatase family tlr1660 PF03109 ABC1 family tlr1676 PF01327 Polypeptide deformylase tlr1678 PF01597 Glycine cleavage H-protein tlr1679 PF02653 Branched-chain amino acid transport system / permease component tlr1682 PF00583 Acetyltransferase (GNAT) family tlr1683 PF02769 AIR synthase related protein, C-terminal domain tlr1683 PF00586 AIR synthase related protein, N-terminal domain tlr1683 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain tlr1684 PF00156 Phosphoribosyl transferase domain tlr1684 PF13537 Glutamine amidotransferase domain tlr1685 PF00326 Prolyl oligopeptidase family tlr1686 PF00677 Lumazine binding domain tlr1689 PF13614 AAA domain tlr1690 PF03459 TOBE domain tlr1690 PF00005 ABC transporter tlr1697 PF17746 SfsA N-terminal OB domain tlr1697 PF03749 Sugar fermentation stimulation protein RE domain tlr1700 PF10792 Protein of unknown function (DUF2605) tlr1707 PF04002 RadC-like JAB domain tlr1707 PF00633 Helix-hairpin-helix motif tlr1710 PF00171 Aldehyde dehydrogenase family tlr1722 PF02915 Rubrerythrin tlr1727 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase tlr1727 PF00925 GTP cyclohydrolase II tlr1732 PF06508 Queuosine biosynthesis protein QueC tlr1733 PF00012 Hsp70 protein tlr1736 PF12795 Mechanosensitive ion channel porin domain tlr1736 PF12794 Mechanosensitive ion channel inner membrane domain 1 tlr1736 PF00924 Mechanosensitive ion channel tlr1740 PF07670 Nucleoside recognition tlr1740 PF02421 Ferrous iron transport protein B tlr1740 PF07664 Ferrous iron transport protein B C terminus tlr1741 PF00210 Ferritin-like domain tlr1743 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion tlr1745 PF02789 Cytosol aminopeptidase family, N-terminal domain tlr1745 PF00883 Cytosol aminopeptidase family, catalytic domain tlr1746 PF04452 RNA methyltransferase tlr1747 PF00164 Ribosomal protein S12/S23 tlr1748 PF00177 Ribosomal protein S7p/S5e tlr1749 PF14492 Elongation Factor G, domain II tlr1749 PF03764 Elongation factor G, domain IV tlr1749 PF03144 Elongation factor Tu domain 2 tlr1749 PF00679 Elongation factor G C-terminus tlr1749 PF00009 Elongation factor Tu GTP binding domain tlr1750 PF03143 Elongation factor Tu C-terminal domain tlr1750 PF00009 Elongation factor Tu GTP binding domain tlr1750 PF03144 Elongation factor Tu domain 2 tlr1751 PF00338 Ribosomal protein S10p/S20e tlr1753 PF01541 GIY-YIG catalytic domain tlr1753 PF12826 Helix-hairpin-helix motif tlr1753 PF08459 UvrC Helix-hairpin-helix N-terminal tlr1753 PF02151 UvrB/uvrC motif tlr1754 PF13085 2Fe-2S iron-sulfur cluster binding domain tlr1756 PF03459 TOBE domain tlr1756 PF00005 ABC transporter tlr1756 PF17912 MalK OB fold domain tlr1757 PF00348 Polyprenyl synthetase tlr1758 PF03816 Cell envelope-related transcriptional attenuator domain tlr1761 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain tlr1761 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain tlr1762 PF02457 DisA bacterial checkpoint controller nucleotide-binding tlr1763 PF01255 Putative undecaprenyl diphosphate synthase tlr1765 PF00288 GHMP kinases N terminal domain tlr1765 PF08544 GHMP kinases C terminal tlr1766 PF18578 Rubisco accumulation factor 1 alpha helical domain tlr1766 PF18087 Rubisco Assembly chaperone C-terminal domain tlr1766 PF18579 Rubisco accumulation factor 1 helix turn helix domain tlr1769 PF00005 ABC transporter tlr1773 PF01467 Cytidylyltransferase-like tlr1773 PF00294 pfkB family carbohydrate kinase tlr1790 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase tlr1791 PF07977 FabA-like domain tlr1792 PF00132 Bacterial transferase hexapeptide (six repeats) tlr1792 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 tlr1793 PF00588 SpoU rRNA Methylase family tlr1795 PF07238 PilZ domain tlr1795 PF03552 Cellulose synthase tlr1795 PF00535 Glycosyl transferase family 2 tlr1799 PF05685 Putative restriction endonuclease tlr1808 PF00289 Biotin carboxylase, N-terminal domain tlr1808 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain tlr1808 PF02785 Biotin carboxylase C-terminal domain tlr1809 PF04101 Glycosyltransferase family 28 C-terminal domain tlr1809 PF03033 Glycosyltransferase family 28 N-terminal domain tlr1810 PF01451 Low molecular weight phosphotyrosine protein phosphatase tlr1811 PF02769 AIR synthase related protein, C-terminal domain tlr1811 PF00586 AIR synthase related protein, N-terminal domain tlr1819 PF00361 Proton-conducting membrane transporter tlr1821 PF03881 Fructosamine kinase tlr1822 PF10502 Signal peptidase, peptidase S26 tlr1823 PF17806 Sarcosine oxidase A3 domain tlr1823 PF07992 Pyridine nucleotide-disulphide oxidoreductase tlr1823 PF01571 Aminomethyltransferase folate-binding domain tlr1823 PF08669 Glycine cleavage T-protein C-terminal barrel domain tlr1827 PF09190 DALR domain tlr1827 PF01406 tRNA synthetases class I (C) catalytic domain tlr1833 PF01842 ACT domain tlr1833 PF13840 ACT domain tlr1833 PF00696 Amino acid kinase family tlr1834 PF00892 EamA-like transporter family tlr1836 PF05175 Methyltransferase small domain tlr1839 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain tlr1839 PF02843 Phosphoribosylglycinamide synthetase, C domain tlr1839 PF02844 Phosphoribosylglycinamide synthetase, N domain tlr1843 PF00124 Photosynthetic reaction centre protein tlr1844 PF00124 Photosynthetic reaction centre protein tlr1848 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain tlr1848 PF07685 CobB/CobQ-like glutamine amidotransferase domain tlr1849 PF04225 Opacity-associated protein A LysM-like domain tlr1849 PF01551 Peptidase family M23 tlr1855 PF12849 PBP superfamily domain tlr1861 PF03477 ATP cone domain tlr1866 PF01276 Orn/Lys/Arg decarboxylase, major domain tlr1866 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain tlr1873 PF08206 Ribonuclease B OB domain tlr1873 PF17876 Cold shock domain tlr1873 PF00575 S1 RNA binding domain tlr1873 PF00773 RNB domain tlr1874 PF00551 Formyl transferase tlr1874 PF02911 Formyl transferase, C-terminal domain tlr1876 PF01434 Peptidase family M41 tlr1876 PF17862 AAA+ lid domain tlr1876 PF00004 ATPase family associated with various cellular activities (AAA) tlr1878 PF01555 DNA methylase tlr1882 PF00005 ABC transporter tlr1892 PF12697 Alpha/beta hydrolase family tlr1901 PF00005 ABC transporter tlr1902 PF12791 Anti-sigma factor N-terminus tlr1902 PF00331 Glycosyl hydrolase family 10 tlr1904 PF00005 ABC transporter tlr1905 PF01458 Uncharacterized protein family (UPF0051) tlr1925 PF02463 RecF/RecN/SMC N terminal domain tlr1925 PF06470 SMC proteins Flexible Hinge Domain tlr1928 PF01081 KDPG and KHG aldolase tlr1930 PF03170 Bacterial cellulose synthase subunit tlr1930 PF03552 Cellulose synthase tlr1930 PF00535 Glycosyl transferase family 2 tlr1930 PF07238 PilZ domain tlr1933 PF03552 Cellulose synthase tlr1933 PF07238 PilZ domain tlr1933 PF00535 Glycosyl transferase family 2 tlr1947 PF02581 Thiamine monophosphate synthase tlr1947 PF17792 ThiD2 family tlr1948 PF13847 Methyltransferase domain tlr1949 PF01571 Aminomethyltransferase folate-binding domain tlr1951 PF01933 Uncharacterised protein family UPF0052 tlr1953 PF01209 ubiE/COQ5 methyltransferase family tlr1957 PF00502 Phycobilisome protein tlr1958 PF00502 Phycobilisome protein tlr1959 PF01383 CpcD/allophycocyanin linker domain tlr1959 PF00427 Phycobilisome Linker polypeptide tlr1961 PF03130 PBS lyase HEAT-like repeat tlr1962 PF03130 PBS lyase HEAT-like repeat tlr1963 PF00427 Phycobilisome Linker polypeptide tlr1964 PF00427 Phycobilisome Linker polypeptide tlr1965 PF00427 Phycobilisome Linker polypeptide tlr1966 PF01551 Peptidase family M23 tlr1973 PF00448 SRP54-type protein, GTPase domain tlr1973 PF02881 SRP54-type protein, helical bundle domain tlr1973 PF02978 Signal peptide binding domain tlr1976 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II tlr1976 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III tlr1976 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I tlr1976 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain tlr1977 PF12320 Type 5 capsule protein repressor C-terminal domain tlr1977 PF00149 Calcineurin-like phosphoesterase tlr1981 PF12706 Beta-lactamase superfamily domain tlr1989 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr1991 PF00005 ABC transporter tlr1995 PF01433 Peptidase family M1 domain tlr1995 PF11838 ERAP1-like C-terminal domain tlr1996 PF00579 tRNA synthetases class I (W and Y) tlr1999 PF03707 Bacterial signalling protein N terminal repeat tlr1999 PF00990 Diguanylate cyclase, GGDEF domain tlr1999 PF00563 EAL domain tlr2001 PF00528 Binding-protein-dependent transport system inner membrane component tlr2002 PF00005 ABC transporter tlr2003 PF00005 ABC transporter tlr2006 PF00005 ABC transporter tlr2014 PF07444 Ycf66 protein N-terminus tlr2016 PF03775 Septum formation inhibitor MinC, C-terminal domain tlr2017 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain tlr2018 PF03776 Septum formation topological specificity factor MinE tlr2020 PF06838 Methionine gamma-lyase tlr2026 PF07085 DRTGG domain tlr2032 PF12323 Helix-turn-helix domain tlr2032 PF01385 Probable transposase tlr2032 PF07282 Putative transposase DNA-binding domain tlr2033 PF04851 Type III restriction enzyme, res subunit tlr2033 PF00271 Helicase conserved C-terminal domain tlr2033 PF12344 Ultra-violet resistance protein B tlr2033 PF02151 UvrB/uvrC motif tlr2033 PF17757 UvrB interaction domain tlr2034 PF00502 Phycobilisome protein tlr2035 PF02542 YgbB family tlr2037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family tlr2037 PF03466 LysR substrate binding domain tlr2041 PF02577 Bifunctional nuclease tlr2047 PF01741 Large-conductance mechanosensitive channel, MscL tlr2055 PF02223 Thymidylate kinase tlr2062 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment tlr2062 PF01297 Zinc-uptake complex component A periplasmic tlr2063 PF00005 ABC transporter tlr2066 PF00561 alpha/beta hydrolase fold tlr2068 PF00266 Aminotransferase class-V tlr2072 PF01795 MraW methylase family tlr2074 PF00905 Penicillin binding protein transpeptidase domain tlr2074 PF03717 Penicillin-binding Protein dimerisation domain tlr2081 PF07726 ATPase family associated with various cellular activities (AAA) tlr2081 PF17863 AAA lid domain tlr2089 PF00154 recA bacterial DNA recombination protein tlr2106 PF00800 Prephenate dehydratase tlr2107 PF01262 Alanine dehydrogenase/PNT, C-terminal domain tlr2107 PF05222 Alanine dehydrogenase/PNT, N-terminal domain tlr2109 PF08281 Sigma-70, region 4 tlr2109 PF04542 Sigma-70 region 2 tlr2119 PF00459 Inositol monophosphatase family tlr2124 PF00361 Proton-conducting membrane transporter tlr2124 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus tlr2124 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus tlr2125 PF00361 Proton-conducting membrane transporter tlr2127 PF00464 Serine hydroxymethyltransferase tlr2128 PF00953 Glycosyl transferase family 4 tlr2129 PF02464 Competence-damaged protein tlr2129 PF18146 Damage-inducible protein CinA KH domain tlr2129 PF00994 Probable molybdopterin binding domain tlr2146 PF00916 Sulfate permease family tlr2146 PF01740 STAS domain tlr2152 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region tlr2152 PF01872 RibD C-terminal domain tlr2154 PF01476 LysM domain tlr2154 PF01551 Peptidase family M23 tlr2154 PF08525 Opacity-associated protein A N-terminal motif tlr2155 PF02602 Uroporphyrinogen-III synthase HemD tlr2156 PF06206 CpeT/CpcT family (DUF1001) tlr2161 PF01479 S4 domain tlr2161 PF17774 Putative RNA-binding domain in YlmH tlr2164 PF12849 PBP superfamily domain tlr2165 PF00528 Binding-protein-dependent transport system inner membrane component tlr2166 PF00528 Binding-protein-dependent transport system inner membrane component tlr2167 PF00005 ABC transporter tlr2169 PF03575 Peptidase family S51 tlr2170 PF08245 Mur ligase middle domain tlr2170 PF08443 RimK-like ATP-grasp domain tlr2170 PF02875 Mur ligase family, glutamate ligase domain tlr2171 PF05378 Hydantoinase/oxoprolinase N-terminal region tlr2171 PF01968 Hydantoinase/oxoprolinase tlr2175 PF13476 AAA domain tlr2176 PF00092 von Willebrand factor type A domain tlr2179 PF12323 Helix-turn-helix domain tlr2179 PF01385 Probable transposase tlr2179 PF07282 Putative transposase DNA-binding domain tlr2182 PF12323 Helix-turn-helix domain tlr2182 PF01385 Probable transposase tlr2182 PF07282 Putative transposase DNA-binding domain tlr2184 PF01145 SPFH domain / Band 7 family tlr2188 PF01914 MarC family integral membrane protein tlr2189 PF00877 NlpC/P60 family tlr2196 PF01040 UbiA prenyltransferase family tlr2199 PF07282 Putative transposase DNA-binding domain tlr2199 PF01385 Probable transposase tlr2199 PF12323 Helix-turn-helix domain tlr2203 PF00486 Transcriptional regulatory protein, C terminal tlr2203 PF00072 Response regulator receiver domain tlr2206 PF16363 GDP-mannose 4,6 dehydratase tlr2209 PF01062 Bestrophin, RFP-TM, chloride channel tlr2216 PF00762 Ferrochelatase tlr2225 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase tlr2234 PF11967 Recombination protein O N terminal tlr2234 PF02565 Recombination protein O C terminal tlr2236 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain tlr2236 PF07228 Stage II sporulation protein E (SpoIIE) tlr2238 PF12323 Helix-turn-helix domain tlr2238 PF01385 Probable transposase tlr2238 PF07282 Putative transposase DNA-binding domain tlr2240 PF00488 MutS domain V tlr2240 PF05192 MutS domain III tlr2240 PF05190 MutS family domain IV tlr2240 PF01624 MutS domain I tlr2240 PF05188 MutS domain II tlr2242 PF03109 ABC1 family tlr2245 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP tlr2259 PF00919 Uncharacterized protein family UPF0004 tlr2259 PF18693 TRAM domain tlr2259 PF04055 Radical SAM superfamily tlr2260 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase tlr2261 PF00578 AhpC/TSA family tlr2261 PF10417 C-terminal domain of 1-Cys peroxiredoxin tlr2263 PF01594 AI-2E family transporter tlr2269 PF00582 Universal stress protein family tlr2276 PF02492 CobW/HypB/UreG, nucleotide-binding domain tlr2276 PF07683 Cobalamin synthesis protein cobW C-terminal domain tlr2283 PF00009 Elongation factor Tu GTP binding domain tlr2283 PF14492 Elongation Factor G, domain II tlr2283 PF03144 Elongation factor Tu domain 2 tlr2283 PF00679 Elongation factor G C-terminus tlr2286 PF00085 Thioredoxin tlr2287 PF04286 Protein of unknown function (DUF445) tlr2289 PF01494 FAD binding domain tlr2302 PF00111 2Fe-2S iron-sulfur cluster binding domain tlr2304 PF03793 PASTA domain tlr2304 PF00069 Protein kinase domain tlr2305 PF04434 SWIM zinc finger tlr2309 PF13249 Squalene-hopene cyclase N-terminal domain tlr2309 PF13243 Squalene-hopene cyclase C-terminal domain tlr2316 PF01531 Glycosyl transferase family 11 tlr2317 PF00535 Glycosyl transferase family 2 tlr2318 PF00535 Glycosyl transferase family 2 tlr2318 PF01501 Glycosyl transferase family 8 tlr2322 PF07282 Putative transposase DNA-binding domain tlr2322 PF01385 Probable transposase tlr2322 PF12323 Helix-turn-helix domain tlr2323 PF12452 Protein of unknown function (DUF3685) tlr2323 PF00072 Response regulator receiver domain tlr2324 PF04966 Carbohydrate-selective porin, OprB family tlr2324 PF00395 S-layer homology domain tlr2325 PF00595 PDZ domain tlr2325 PF03572 Peptidase family S41 tlr2326 PF00551 Formyl transferase tlr2330 PF00133 tRNA synthetases class I (I, L, M and V) tlr2330 PF06827 Zinc finger found in FPG and IleRS tlr2330 PF08264 Anticodon-binding domain of tRNA tlr2337 PF00860 Permease family tlr2338 PF00156 Phosphoribosyl transferase domain tlr2340 PF00871 Acetokinase family tlr2344 PF00263 Bacterial type II and III secretion system protein tlr2344 PF11741 AMIN domain tlr2344 PF03958 Bacterial type II/III secretion system short domain tlr2344 PF07660 Secretin and TonB N terminus short domain tlr2354 PF03816 Cell envelope-related transcriptional attenuator domain tlr2355 PF00480 ROK family tlr2358 PF00535 Glycosyl transferase family 2 tlr2368 PF05690 Thiazole biosynthesis protein ThiG tlr2368 PF01266 FAD dependent oxidoreductase tlr2376 PF01385 Probable transposase tlr2376 PF07282 Putative transposase DNA-binding domain tlr2376 PF12323 Helix-turn-helix domain tlr2377 PF03186 CobD/Cbib protein tlr2384 PF01940 Integral membrane protein DUF92 tlr2389 PF00534 Glycosyl transferases group 1 tlr2389 PF13439 Glycosyltransferase Family 4 tlr2393 PF00285 Citrate synthase, C-terminal domain tlr2394 PF02637 GatB domain tlr2394 PF02934 GatB/GatE catalytic domain tlr2399 PF12323 Helix-turn-helix domain tlr2399 PF01385 Probable transposase tlr2399 PF07282 Putative transposase DNA-binding domain tlr2403 PF00581 Rhodanese-like domain tlr2403 PF00899 ThiF family tlr2404 PF02605 Photosystem I reaction centre subunit XI tlr2411 PF02507 Photosystem I reaction centre subunit III tlr2413 PF03948 Ribosomal protein L9, C-terminal domain tlr2413 PF01281 Ribosomal protein L9, N-terminal domain tlr2414 PF00772 DnaB-like helicase N terminal domain tlr2414 PF03796 DnaB-like helicase C terminal domain tlr2414 PF00772 DnaB-like helicase N terminal domain tlr2414 PF14528 LAGLIDADG-like domain tlr2414 PF03796 DnaB-like helicase C terminal domain tlr2414 PF14528 LAGLIDADG-like domain tlr2415 PF06150 ChaB tlr2419 PF10609 NUBPL iron-transfer P-loop NTPase tlr2419 PF01883 Iron-sulfur cluster assembly protein tlr2420 PF01252 Signal peptidase (SPase) II tlr2423 PF00486 Transcriptional regulatory protein, C terminal tlr2423 PF00072 Response regulator receiver domain tlr2426 PF07689 KaiB domain tlr2426 PF00512 His Kinase A (phospho-acceptor) domain tlr2426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tlr2432 PF00069 Protein kinase domain tlr2436 PF13180 PDZ domain tlr2443 PF04472 Cell division protein SepF tlr2459 PF13361 UvrD-like helicase C-terminal domain tlr2459 PF00580 UvrD/REP helicase N-terminal domain tlr2462 PF00830 Ribosomal L28 family tlr2465 PF08719 Domain of unknown function (DUF1768) tlr2472 PF00488 MutS domain V tlr2472 PF01713 Smr domain tlr2473 PF01336 OB-fold nucleic acid binding domain tlr2473 PF00152 tRNA synthetases class II (D, K and N) tsl0017 PF11910 Cyanobacterial and plant NDH-1 subunit O tsl0023 PF04304 Protein of unknown function (DUF454) tsl0038 PF01165 Ribosomal protein S21 tsl0040 PF00886 Ribosomal protein S16 tsl0166 PF01016 Ribosomal L27 protein tsl0176 PF02533 Photosystem II 4 kDa reaction centre component tsl0388 PF01385 Probable transposase tsl0388 PF07282 Putative transposase DNA-binding domain tsl0388 PF12323 Helix-turn-helix domain tsl0469 PF07282 Putative transposase DNA-binding domain tsl0469 PF01385 Probable transposase tsl0469 PF12323 Helix-turn-helix domain tsl0602 PF00468 Ribosomal protein L34 tsl0836 PF06298 Photosystem II protein Y (PsbY) tsl0875 PF01722 BolA-like protein tsl0955 PF01383 CpcD/allophycocyanin linker domain tsl1009 PF00111 2Fe-2S iron-sulfur cluster binding domain tsl1013 PF12838 4Fe-4S dicluster domain tsl1016 PF02069 Prokaryotic metallothionein tsl1188 PF01649 Ribosomal protein S20 tsl1248 PF07683 Cobalamin synthesis protein cobW C-terminal domain tsl1248 PF02492 CobW/HypB/UreG, nucleotide-binding domain tsl1293 PF01106 NifU-like domain tsl1361 PF02597 ThiS family tsl1385 PF02416 mttA/Hcf106 family tsl1386 PF00737 Photosystem II 10 kDa phosphoprotein tsl1517 PF02941 Ferredoxin thioredoxin reductase variable alpha chain tsl1524 PF02686 Glu-tRNAGln amidotransferase C subunit tsl1557 PF00970 Oxidoreductase FAD-binding domain tsl1557 PF00175 Oxidoreductase NAD-binding domain tsl1557 PF00111 2Fe-2S iron-sulfur cluster binding domain tsl1567 PF02427 Photosystem I reaction centre subunit IV / PsaE tsl1825 PF01329 Pterin 4 alpha carbinolamine dehydratase tsl1865 PF00072 Response regulator receiver domain tsl1865 PF00196 Bacterial regulatory proteins, luxR family tsl1872 PF00550 Phosphopantetheine attachment site tsl1889 PF08331 Domain of unknown function (DUF1730) tsl2052 PF05151 Photosystem II reaction centre M protein (PsbM) tsl2094 PF00037 4Fe-4S binding domain tsl2159 PF01632 Ribosomal protein L35 tsl2197 PF17275 Family of unknown function (DUF5340) tsl2208 PF00762 Ferrochelatase tsl2255 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) tsl2331 PF04025 Domain of unknown function (DUF370) tsl2468 PF10742 Protein of unknown function (DUF2555) tsl2479 PF03742 PetN tsr0033 PF04485 Phycobilisome degradation protein nblA tsr0085 PF00203 Ribosomal protein S19 tsr0089 PF00831 Ribosomal L29 protein tsr0090 PF00366 Ribosomal protein S17 tsr0101 PF01176 Translation initiation factor 1A / IF-1 tsr0102 PF00444 Ribosomal protein L36 tsr0110 PF01197 Ribosomal protein L31 tsr0197 PF07465 Photosystem I protein M (PsaM) tsr0427 PF01740 STAS domain tsr0446 PF00762 Ferrochelatase tsr0564 PF01809 Putative membrane protein insertion efficiency factor tsr0688 PF03734 L,D-transpeptidase catalytic domain tsr0688 PF01476 LysM domain tsr0695 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch tsr0706 PF10716 NADH dehydrogenase transmembrane subunit tsr0813 PF08078 PsaX family tsr0877 PF02529 Cytochrome B6-F complex subunit 5 tsr0907 PF00462 Glutaredoxin tsr0983 PF02597 ThiS family tsr1002 PF00005 ABC transporter tsr1069 PF00528 Binding-protein-dependent transport system inner membrane component tsr1074 PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) tsr1087 PF02617 ATP-dependent Clp protease adaptor protein ClpS tsr1207 PF00312 Ribosomal protein S15 tsr1242 PF05969 Photosystem II complex subunit Ycf12 tsr1387 PF02468 Photosystem II reaction centre N protein (psbN) tsr1416 PF08041 PetM family of cytochrome b6f complex subunit 7 tsr1443 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) tsr1531 PF01405 Photosystem II reaction centre T protein tsr1541 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit tsr1541 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits tsr1542 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits tsr1543 PF02419 PsbL protein tsr1544 PF01788 PsbJ tsr1755 PF00762 Ferrochelatase tsr1915 PF01783 Ribosomal L32p protein family tsr1960 PF01383 CpcD/allophycocyanin linker domain tsr1967 PF01737 YCF9 tsr1994 PF02594 Uncharacterised ACR, YggU family COG1872 tsr2013 PF06596 Photosystem II reaction centre X protein (PsbX) tsr2060 PF00471 Ribosomal protein L33 tsr2061 PF01084 Ribosomal protein S18 tsr2185 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase tsr2257 PF01192 RNA polymerase Rpb6 tsr2273 PF01241 Photosystem I psaG / psaK tsr2405 PF00796 Photosystem I reaction centre subunit VIII tsr2412 PF01701 Photosystem I reaction centre subunit IX / PsaJ