locus-tag class description TM0006 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TM0006 PF13378 Enolase C-terminal domain-like TM0008 PF04199 Putative cyclase TM0010 PF00037 4Fe-4S binding domain TM0010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM0010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TM0014 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM0015 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TM0017 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TM0017 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TM0018 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM0020 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TM0021 PF02641 Uncharacterized ACR, COG1993 TM0022 PF01119 DNA mismatch repair protein, C-terminal domain TM0022 PF08676 MutL C terminal dimerisation domain TM0023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM0024 PF00722 Glycosyl hydrolases family 16 TM0025 PF01915 Glycosyl hydrolase family 3 C-terminal domain TM0025 PF14310 Fibronectin type III-like domain TM0025 PF00933 Glycosyl hydrolase family 3 N terminal domain TM0027 PF00005 ABC transporter TM0027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0028 PF00005 ABC transporter TM0028 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0030 PF00528 Binding-protein-dependent transport system inner membrane component TM0031 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM0032 PF00480 ROK family TM0036 PF03266 NTPase TM0037 PF01966 HD domain TM0038 PF01242 6-pyruvoyl tetrahydropterin synthase TM0039 PF02649 Type I GTP cyclohydrolase folE2 TM0040 PF00809 Pterin binding enzyme TM0041 PF02152 Dihydroneopterin aldolase TM0041 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TM0042 PF00557 Metallopeptidase family M24 TM0042 PF01321 Creatinase/Prolidase N-terminal domain TM0043 PF00664 ABC transporter transmembrane region TM0043 PF00005 ABC transporter TM0047 PF12323 Helix-turn-helix domain TM0047 PF01385 Probable transposase TM0047 PF07282 Putative transposase DNA-binding domain TM0049 PF04015 Domain of unknown function (DUF362) TM0051 PF04023 FeoA domain TM0051 PF17910 FeoB cytosolic helical domain TM0051 PF07670 Nucleoside recognition TM0051 PF07664 Ferrous iron transport protein B C terminus TM0051 PF02421 Ferrous iron transport protein B TM0055 PF07488 Glycosyl hydrolase family 67 middle domain TM0055 PF03648 Glycosyl hydrolase family 67 N-terminus TM0055 PF07477 Glycosyl hydrolase family 67 C-terminus TM0056 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM0057 PF00005 ABC transporter TM0057 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0058 PF00005 ABC transporter TM0058 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0059 PF12911 N-terminal TM domain of oligopeptide transport permease C TM0059 PF00528 Binding-protein-dependent transport system inner membrane component TM0060 PF00528 Binding-protein-dependent transport system inner membrane component TM0061 PF06452 Carbohydrate family 9 binding domain-like TM0061 PF02018 Carbohydrate binding domain TM0061 PF00331 Glycosyl hydrolase family 10 TM0064 PF02614 Glucuronate isomerase TM0065 PF01614 Bacterial transcriptional regulator TM0065 PF09339 IclR helix-turn-helix domain TM0066 PF01081 KDPG and KHG aldolase TM0068 PF01232 Mannitol dehydrogenase Rossmann domain TM0068 PF08125 Mannitol dehydrogenase C-terminal domain TM0069 PF03786 D-mannonate dehydratase (UxuA) TM0070 PF00331 Glycosyl hydrolase family 10 TM0071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM0072 PF00528 Binding-protein-dependent transport system inner membrane component TM0073 PF00528 Binding-protein-dependent transport system inner membrane component TM0073 PF12911 N-terminal TM domain of oligopeptide transport permease C TM0074 PF00005 ABC transporter TM0074 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0075 PF00005 ABC transporter TM0075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0076 PF01915 Glycosyl hydrolase family 3 C-terminal domain TM0076 PF14310 Fibronectin type III-like domain TM0076 PF00933 Glycosyl hydrolase family 3 N terminal domain TM0077 PF05448 Acetyl xylan esterase (AXE1) TM0078 PF00005 ABC transporter TM0079 PF01032 FecCD transport family TM0080 PF01497 Periplasmic binding protein TM0081 PF02623 FliW protein TM0082 PF00669 Bacterial flagellin N-terminal helical region TM0083 PF07196 Flagellin hook IN motif TM0083 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM0086 PF03023 Lipid II flippase MurJ TM0087 PF01875 Memo-like protein TM0088 PF11741 AMIN domain TM0088 PF00263 Bacterial type II and III secretion system protein TM0088 PF03958 Bacterial type II/III secretion system short domain TM0088 PF07660 Secretin and TonB N terminus short domain TM0094 PF00482 Type II secretion system (T2SS), protein F TM0095 PF02915 Rubrerythrin TM0096 PF01207 Dihydrouridine synthase (Dus) TM0097 PF01467 Cytidylyltransferase-like TM0098 PF09269 Domain of unknown function (DUF1967) TM0098 PF01926 50S ribosome-binding GTPase TM0098 PF01018 GTP1/OBG TM0100 PF12826 Helix-hairpin-helix motif TM0100 PF03120 NAD-dependent DNA ligase OB-fold domain TM0100 PF01653 NAD-dependent DNA ligase adenylation domain TM0100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TM0100 PF00533 BRCA1 C Terminus (BRCT) domain TM0102 PF02608 ABC transporter substrate-binding protein PnrA-like TM0103 PF00005 ABC transporter TM0104 PF02653 Branched-chain amino acid transport system / permease component TM0105 PF02653 Branched-chain amino acid transport system / permease component TM0108 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TM0110 PF00480 ROK family TM0110 PF01325 Iron dependent repressor, N-terminal DNA binding domain TM0111 PF00465 Iron-containing alcohol dehydrogenase TM0112 PF02653 Branched-chain amino acid transport system / permease component TM0113 PF01522 Polysaccharide deacetylase TM0115 PF00005 ABC transporter TM0116 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM0116 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM0118 PF00317 Ribonucleotide reductase, all-alpha domain TM0118 PF02867 Ribonucleotide reductase, barrel domain TM0118 PF03477 ATP cone domain TM0120 PF00881 Nitroreductase family TM0123 PF01297 Zinc-uptake complex component A periplasmic TM0124 PF00005 ABC transporter TM0125 PF00950 ABC 3 transport family TM0126 PF00072 Response regulator receiver domain TM0126 PF00486 Transcriptional regulatory protein, C terminal TM0128 PF02436 Conserved carboxylase domain TM0128 PF00682 HMGL-like TM0128 PF00364 Biotin-requiring enzyme TM0130 PF07690 Major Facilitator Superfamily TM0132 PF00700 Bacterial flagellin C-terminal helical region TM0132 PF00669 Bacterial flagellin N-terminal helical region TM0133 PF00857 Isochorismatase family TM0134 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0136 PF04055 Radical SAM superfamily TM0137 PF00290 Tryptophan synthase alpha chain TM0138 PF00291 Pyridoxal-phosphate dependent enzyme TM0139 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TM0140 PF00218 Indole-3-glycerol phosphate synthase TM0141 PF02885 Glycosyl transferase family, helical bundle domain TM0141 PF00117 Glutamine amidotransferase class-I TM0141 PF00591 Glycosyl transferase family, a/b domain TM0142 PF00425 chorismate binding enzyme TM0142 PF04715 Anthranilate synthase component I, N terminal region TM0143 PF00990 Diguanylate cyclase, GGDEF domain TM0143 PF00072 Response regulator receiver domain TM0145 PF00814 Glycoprotease family TM0146 PF10431 C-terminal, D2-small domain, of ClpB protein TM0146 PF07724 AAA domain (Cdc48 subfamily) TM0146 PF06689 ClpX C4-type zinc finger TM0148 PF01380 SIS domain TM0149 PF02504 Fatty acid synthesis protein TM0150 PF01783 Ribosomal L32p protein family TM0155 PF01842 ACT domain TM0155 PF01817 Chorismate mutase type II TM0155 PF00800 Prephenate dehydratase TM0156 PF00245 Alkaline phosphatase TM0158 PF01790 Prolipoprotein diacylglyceryl transferase TM0159 PF01725 Ham1 family TM0161 PF00348 Polyprenyl synthetase TM0165 PF01330 RuvA N terminal domain TM0165 PF07499 RuvA, C-terminal domain TM0166 PF08245 Mur ligase middle domain TM0166 PF02875 Mur ligase family, glutamate ligase domain TM0167 PF01676 Metalloenzyme superfamily TM0168 PF13603 Leucyl-tRNA synthetase, Domain 2 TM0168 PF00133 tRNA synthetases class I (I, L, M and V) TM0168 PF08264 Anticodon-binding domain of tRNA TM0168 PF09334 tRNA synthetases class I (M) TM0169 PF02629 CoA binding domain TM0169 PF06971 Putative DNA-binding protein N-terminus TM0172 PF05221 S-adenosyl-L-homocysteine hydrolase TM0172 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TM0173 PF01751 Toprim domain TM0173 PF17915 Reverse gyrase zinc finger TM0173 PF01131 DNA topoisomerase TM0173 PF00270 DEAD/DEAH box helicase TM0174 PF03030 Inorganic H+ pyrophosphatase TM0175 PF00550 Phosphopantetheine attachment site TM0177 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TM0177 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TM0178 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TM0178 PF04851 Type III restriction enzyme, res subunit TM0178 PF17764 3′ DNA-binding domain (3′BD) TM0178 PF18074 Primosomal protein N C-terminal domain TM0182 PF00919 Uncharacterized protein family UPF0004 TM0182 PF04055 Radical SAM superfamily TM0182 PF01938 TRAM domain TM0183 PF02540 NAD synthase TM0183 PF00795 Carbon-nitrogen hydrolase TM0184 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TM0184 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TM0184 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TM0184 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TM0186 PF01966 HD domain TM0186 PF00072 Response regulator receiver domain TM0187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM0187 PF00512 His Kinase A (phospho-acceptor) domain TM0187 PF09308 LuxQ, periplasmic TM0187 PF00072 Response regulator receiver domain TM0188 PF01980 tRNA-methyltransferase O TM0189 PF01497 Periplasmic binding protein TM0190 PF01032 FecCD transport family TM0191 PF00005 ABC transporter TM0192 PF04232 Stage V sporulation protein S (SpoVS) TM0193 PF03649 Uncharacterised protein family (UPF0014) TM0194 PF00005 ABC transporter TM0195 PF02541 Ppx/GppA phosphatase family TM0197 PF01171 PP-loop family TM0198 PF07724 AAA domain (Cdc48 subfamily) TM0198 PF17871 AAA lid domain TM0198 PF00004 ATPase family associated with various cellular activities (AAA) TM0198 PF10431 C-terminal, D2-small domain, of ClpB protein TM0198 PF02861 Clp amino terminal domain, pathogenicity island component TM0199 PF18073 Rubredoxin metal binding domain TM0200 PF10635 DisA bacterial checkpoint controller linker region TM0200 PF00633 Helix-hairpin-helix motif TM0200 PF02457 DisA bacterial checkpoint controller nucleotide-binding TM0201 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TM0201 PF02256 Iron hydrogenase small subunit TM0201 PF02906 Iron only hydrogenase large subunit, C-terminal domain TM0201 PF00037 4Fe-4S binding domain TM0204 PF00005 ABC transporter TM0205 PF17191 RecG wedge domain TM0205 PF00271 Helicase conserved C-terminal domain TM0205 PF00270 DEAD/DEAH box helicase TM0206 PF00156 Phosphoribosyl transferase domain TM0208 PF00224 Pyruvate kinase, barrel domain TM0208 PF02887 Pyruvate kinase, alpha/beta domain TM0209 PF00365 Phosphofructokinase TM0211 PF08669 Glycine cleavage T-protein C-terminal barrel domain TM0211 PF01571 Aminomethyltransferase folate-binding domain TM0212 PF01597 Glycine cleavage H-protein TM0213 PF02347 Glycine cleavage system P-protein TM0214 PF02347 Glycine cleavage system P-protein TM0215 PF01042 Endoribonuclease L-PSP TM0216 PF02091 Glycyl-tRNA synthetase alpha subunit TM0217 PF05746 DALR anticodon binding domain TM0217 PF02092 Glycyl-tRNA synthetase beta subunit TM0218 PF02874 ATP synthase alpha/beta family, beta-barrel domain TM0218 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM0218 PF18269 T3SS EscN ATPase C-terminal domain TM0219 PF02108 Flagellar assembly protein FliH TM0220 PF01706 FliG C-terminal domain TM0220 PF14841 FliG middle domain TM0220 PF14842 FliG N-terminal domain TM0221 PF01514 Secretory protein of YscJ/FliF family TM0221 PF08345 Flagellar M-ring protein C-terminal TM0222 PF00005 ABC transporter TM0224 PF08279 HTH domain TM0224 PF03099 Biotin/lipoate A/B protein ligase family TM0224 PF02237 Biotin protein ligase C terminal domain TM0225 PF00291 Pyridoxal-phosphate dependent enzyme TM0228 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TM0228 PF00037 4Fe-4S binding domain TM0228 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM0231 PF01225 Mur ligase family, catalytic domain TM0231 PF02875 Mur ligase family, glutamate ligase domain TM0231 PF08245 Mur ligase middle domain TM0232 PF04101 Glycosyltransferase family 28 C-terminal domain TM0232 PF03033 Glycosyltransferase family 28 N-terminal domain TM0233 PF01098 Cell cycle protein TM0234 PF08245 Mur ligase middle domain TM0235 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TM0235 PF00953 Glycosyl transferase family 4 TM0236 PF08245 Mur ligase middle domain TM0236 PF02875 Mur ligase family, glutamate ligase domain TM0236 PF01225 Mur ligase family, catalytic domain TM0237 PF01225 Mur ligase family, catalytic domain TM0237 PF02875 Mur ligase family, glutamate ligase domain TM0237 PF08245 Mur ligase middle domain TM0239 PF00483 Nucleotidyl transferase TM0239 PF00132 Bacterial transferase hexapeptide (six repeats) TM0240 PF00483 Nucleotidyl transferase TM0240 PF00132 Bacterial transferase hexapeptide (six repeats) TM0243 PF04055 Radical SAM superfamily TM0243 PF06968 Biotin and Thiamin Synthesis associated domain TM0244 PF10531 SLBB domain TM0244 PF13375 RnfC Barrel sandwich hybrid domain TM0244 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM0244 PF13237 4Fe-4S dicluster domain TM0245 PF03116 NQR2, RnfD, RnfE family TM0247 PF02508 Rnf-Nqr subunit, membrane protein TM0248 PF02508 Rnf-Nqr subunit, membrane protein TM0249 PF13187 4Fe-4S dicluster domain TM0249 PF04060 Putative Fe-S cluster TM0250 PF18255 DNA processing protein A sterile alpha motif domain TM0250 PF02481 DNA recombination-mediator protein A TM0251 PF02599 Global regulator protein family TM0252 PF02686 Glu-tRNAGln amidotransferase C subunit TM0253 PF02021 Uncharacterised protein family UPF0102 TM0255 PF00830 Ribosomal L28 family TM0258 PF01131 DNA topoisomerase TM0258 PF01751 Toprim domain TM0259 PF01820 D-ala D-ala ligase N-terminus TM0259 PF07478 D-ala D-ala ligase C-terminus TM0261 PF01384 Phosphate transporter family TM0262 PF02768 DNA polymerase III beta subunit, C-terminal domain TM0262 PF02767 DNA polymerase III beta subunit, central domain TM0262 PF00712 DNA polymerase III beta subunit, N-terminal domain TM0263 PF01134 Glucose inhibited division protein A TM0263 PF13932 GidA associated domain TM0264 PF01479 S4 domain TM0264 PF00849 RNA pseudouridylate synthase TM0265 PF01541 GIY-YIG catalytic domain TM0265 PF02151 UvrB/uvrC motif TM0265 PF08459 UvrC Helix-hairpin-helix N-terminal TM0266 PF00216 Bacterial DNA-binding protein TM0267 PF12631 MnmE helical domain TM0267 PF01926 50S ribosome-binding GTPase TM0267 PF10396 GTP-binding protein TrmE N-terminus TM0268 PF00809 Pterin binding enzyme TM0268 PF02607 B12 binding domain TM0268 PF02965 Vitamin B12 dependent methionine synthase, activation domain TM0268 PF02310 B12 binding domain TM0268 PF02574 Homocysteine S-methyltransferase TM0270 PF02219 Methylenetetrahydrofolate reductase TM0270 PF02574 Homocysteine S-methyltransferase TM0272 PF00391 PEP-utilising enzyme, mobile domain TM0272 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TM0272 PF02896 PEP-utilising enzyme, TIM barrel domain TM0273 PF01116 Fructose-bisphosphate aldolase class-II TM0274 PF00871 Acetokinase family TM0275 PF00392 Bacterial regulatory proteins, gntR family TM0276 PF11762 L-arabinose isomerase C-terminal domain TM0276 PF02610 L-arabinose isomerase TM0278 PF00528 Binding-protein-dependent transport system inner membrane component TM0279 PF00528 Binding-protein-dependent transport system inner membrane component TM0281 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TM0282 PF01263 Aldose 1-epimerase TM0283 PF00596 Class II Aldolase and Adducin N-terminal domain TM0284 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM0284 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM0285 PF13685 Iron-containing alcohol dehydrogenase TM0287 PF00005 ABC transporter TM0287 PF00664 ABC transporter transmembrane region TM0288 PF00664 ABC transporter transmembrane region TM0288 PF00005 ABC transporter TM0289 PF00365 Phosphofructokinase TM0290 PF00285 Citrate synthase, C-terminal domain TM0291 PF00330 Aconitase family (aconitate hydratase) TM0292 PF00694 Aconitase C-terminal domain TM0293 PF00171 Aldehyde dehydrogenase family TM0294 PF01472 PUA domain TM0294 PF00696 Amino acid kinase family TM0295 PF00923 Transaldolase/Fructose-6-phosphate aldolase TM0296 PF00294 pfkB family carbohydrate kinase TM0298 PF08240 Alcohol dehydrogenase GroES-like domain TM0298 PF16912 Glucose dehydrogenase C-terminus TM0299 PF00356 Bacterial regulatory proteins, lacI family TM0301 PF00528 Binding-protein-dependent transport system inner membrane component TM0302 PF00528 Binding-protein-dependent transport system inner membrane component TM0302 PF12911 N-terminal TM domain of oligopeptide transport permease C TM0303 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0303 PF00005 ABC transporter TM0304 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0304 PF00005 ABC transporter TM0305 PF00942 Cellulose binding domain TM0305 PF03442 Carbohydrate binding domain X2 TM0308 PF01055 Glycosyl hydrolases family 31 TM0308 PF13802 Galactose mutarotase-like TM0309 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM0310 PF08532 Beta-galactosidase trimerisation domain TM0310 PF02449 Beta-galactosidase TM0310 PF08533 Beta-galactosidase C-terminal domain TM0312 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TM0312 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TM0313 PF00248 Aldo/keto reductase family TM0317 PF00403 Heavy-metal-associated domain TM0318 PF01209 ubiE/COQ5 methyltransferase family TM0322 PF03480 Bacterial extracellular solute-binding protein, family 7 TM0324 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TM0326 PF01380 SIS domain TM0326 PF01418 Helix-turn-helix domain, rpiR family TM0327 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TM0327 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TM0328 PF01555 DNA methylase TM0330 PF07969 Amidohydrolase family TM0331 PF00156 Phosphoribosyl transferase domain TM0332 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TM0333 PF01180 Dihydroorotate dehydrogenase TM0334 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TM0336 PF13026 Protein of unknown function (DUF3887) TM0336 PF12146 Serine aminopeptidase, S33 TM0337 PF08497 Radical SAM N-terminal TM0337 PF04055 Radical SAM superfamily TM0343 PF00793 DAHP synthetase I family TM0343 PF18152 DAHP synthase ferredoxin-like domain TM0345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TM0346 PF01488 Shikimate / quinate 5-dehydrogenase TM0346 PF08501 Shikimate dehydrogenase substrate binding domain TM0347 PF01264 Chorismate synthase TM0348 PF01761 3-dehydroquinate synthase TM0348 PF01202 Shikimate kinase TM0349 PF01220 Dehydroquinase class II TM0351 PF00005 ABC transporter TM0351 PF02687 FtsX-like permease family TM0351 PF12704 MacB-like periplasmic core domain TM0352 PF00005 ABC transporter TM0353 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TM0356 PF00291 Pyridoxal-phosphate dependent enzyme TM0356 PF13291 ACT domain TM0358 PF00781 Diacylglycerol kinase catalytic domain TM0359 PF13439 Glycosyltransferase Family 4 TM0360 PF03819 MazG nucleotide pyrophosphohydrolase domain TM0362 PF01261 Xylose isomerase-like TIM barrel TM0363 PF05670 NFACT protein RNA binding domain TM0364 PF09178 Domain of unknown function (DUF1945) TM0364 PF00128 Alpha amylase, catalytic domain TM0365 PF02127 Aminopeptidase I zinc metalloprotease (M18) TM0366 PF10576 Iron-sulfur binding domain of endonuclease III TM0366 PF00633 Helix-hairpin-helix motif TM0366 PF00730 HhH-GPD superfamily base excision DNA repair protein TM0370 PF06745 KaiC TM0371 PF02863 Arginine repressor, C-terminal domain TM0371 PF01316 Arginine repressor, DNA binding domain TM0372 PF00873 AcrB/AcrD/AcrF family TM0373 PF00012 Hsp70 protein TM0374 PF00011 Hsp20/alpha crystallin family TM0375 PF06130 Phosphate propanoyltransferase TM0376 PF01925 Sulfite exporter TauE/SafE TM0379 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TM0379 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0381 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TM0381 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0382 PF00730 HhH-GPD superfamily base excision DNA repair protein TM0382 PF00633 Helix-hairpin-helix motif TM0382 PF14815 NUDIX domain TM0383 PF00881 Nitroreductase family TM0385 PF03477 ATP cone domain TM0385 PF13597 Anaerobic ribonucleoside-triphosphate reductase TM0386 PF00881 Nitroreductase family TM0389 PF00005 ABC transporter TM0392 PF00534 Glycosyl transferases group 1 TM0395 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0396 PF13247 4Fe-4S dicluster domain TM0396 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0396 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TM0397 PF13187 4Fe-4S dicluster domain TM0397 PF01645 Conserved region in glutamate synthase TM0398 PF00310 Glutamine amidotransferases class-II TM0399 PF00486 Transcriptional regulatory protein, C terminal TM0399 PF00072 Response regulator receiver domain TM0400 PF00512 His Kinase A (phospho-acceptor) domain TM0400 PF00672 HAMP domain TM0400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM0401 PF00265 Thymidine kinase TM0402 PF00909 Ammonium Transporter Family TM0403 PF00543 Nitrogen regulatory protein P-II TM0405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM0408 PF00072 Response regulator receiver domain TM0408 PF01339 CheB methylesterase TM0409 PF01551 Peptidase family M23 TM0409 PF04225 Opacity-associated protein A LysM-like domain TM0411 PF00480 ROK family TM0411 PF01047 MarR family TM0412 PF00107 Zinc-binding dehydrogenase TM0412 PF08240 Alcohol dehydrogenase GroES-like domain TM0413 PF02633 Creatinine amidohydrolase TM0414 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TM0414 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TM0416 PF01261 Xylose isomerase-like TIM barrel TM0417 PF03239 Iron permease FTR1 family TM0419 PF00528 Binding-protein-dependent transport system inner membrane component TM0420 PF00528 Binding-protein-dependent transport system inner membrane component TM0421 PF17912 MalK OB fold domain TM0421 PF00005 ABC transporter TM0421 PF03459 TOBE domain TM0423 PF00465 Iron-containing alcohol dehydrogenase TM0428 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TM0429 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM0430 PF00528 Binding-protein-dependent transport system inner membrane component TM0431 PF00528 Binding-protein-dependent transport system inner membrane component TM0433 PF00544 Pectate lyase TM0434 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM0434 PF02056 Family 4 glycosyl hydrolase TM0435 PF05448 Acetyl xylan esterase (AXE1) TM0436 PF08240 Alcohol dehydrogenase GroES-like domain TM0436 PF00107 Zinc-binding dehydrogenase TM0437 PF00295 Glycosyl hydrolases family 28 TM0438 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TM0438 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TM0439 PF00392 Bacterial regulatory proteins, gntR family TM0439 PF07729 FCD domain TM0440 PF16257 tagaturonate epimerase TM0443 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM0443 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM0444 PF10415 Fumarase C C-terminus TM0444 PF00206 Lyase TM0445 PF12631 MnmE helical domain TM0445 PF10396 GTP-binding protein TrmE N-terminus TM0445 PF01926 50S ribosome-binding GTPase TM0446 PF00731 AIR carboxylase TM0447 PF02222 ATP-grasp domain TM0447 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TM0448 PF07244 Surface antigen variable number repeat TM0448 PF01103 Surface antigen TM0449 PF02511 Thymidylate synthase complementing protein TM0451 PF00471 Ribosomal protein L33 TM0452 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TM0453 PF18298 NusG additional domain TM0453 PF02357 Transcription termination factor nusG TM0453 PF00467 KOW motif TM0454 PF00298 Ribosomal protein L11, RNA binding domain TM0454 PF03946 Ribosomal protein L11, N-terminal domain TM0455 PF00687 Ribosomal protein L1p/L10e family TM0456 PF00466 Ribosomal protein L10 TM0457 PF16320 Ribosomal protein L7/L12 dimerisation domain TM0457 PF00542 Ribosomal protein L7/L12 C-terminal domain TM0458 PF04560 RNA polymerase Rpb2, domain 7 TM0458 PF00562 RNA polymerase Rpb2, domain 6 TM0458 PF04563 RNA polymerase beta subunit TM0458 PF10385 RNA polymerase beta subunit external 1 domain TM0458 PF04565 RNA polymerase Rpb2, domain 3 TM0459 PF04997 RNA polymerase Rpb1, domain 1 TM0459 PF00623 RNA polymerase Rpb1, domain 2 TM0459 PF05000 RNA polymerase Rpb1, domain 4 TM0459 PF04983 RNA polymerase Rpb1, domain 3 TM0459 PF04998 RNA polymerase Rpb1, domain 5 TM0460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM0461 PF14579 Helix-hairpin-helix motif TM0461 PF07733 Bacterial DNA polymerase III alpha NTPase domain TM0461 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TM0462 PF00849 RNA pseudouridylate synthase TM0462 PF01479 S4 domain TM0463 PF01252 Signal peptidase (SPase) II TM0464 PF01739 CheR methyltransferase, SAM binding domain TM0464 PF03705 CheR methyltransferase, all-alpha domain TM0466 PF01709 Transcriptional regulator TM0468 PF00486 Transcriptional regulatory protein, C terminal TM0468 PF00072 Response regulator receiver domain TM0472 PF01174 SNO glutamine amidotransferase family TM0473 PF01680 SOR/SNZ family TM0475 PF00857 Isochorismatase family TM0477 PF00395 S-layer homology domain TM0478 PF00579 tRNA synthetases class I (W and Y) TM0478 PF01479 S4 domain TM0480 PF17760 UvrA interaction domain TM0480 PF17755 UvrA DNA-binding domain TM0480 PF00005 ABC transporter TM0483 PF00005 ABC transporter TM0485 PF00528 Binding-protein-dependent transport system inner membrane component TM0486 PF01910 Thiamine-binding protein TM0487 PF01883 Iron-sulfur cluster assembly protein TM0488 PF17827 PrmC N-terminal domain TM0488 PF05175 Methyltransferase small domain TM0490 PF02146 Sir2 family TM0492 PF00579 tRNA synthetases class I (W and Y) TM0493 PF02616 Segregation and condensation protein ScpA TM0494 PF04079 Segregation and condensation complex subunit ScpB TM0495 PF02562 PhoH-like protein TM0495 PF13638 PIN domain TM0496 PF11490 DNA polymerase III polC-type N-terminus II TM0496 PF01336 OB-fold nucleic acid binding domain TM0496 PF00929 Exonuclease TM0496 PF02811 PHP domain TM0496 PF07733 Bacterial DNA polymerase III alpha NTPase domain TM0496 PF14579 Helix-hairpin-helix motif TM0496 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TM0498 PF00005 ABC transporter TM0498 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0500 PF00005 ABC transporter TM0500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0501 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0501 PF00005 ABC transporter TM0502 PF00528 Binding-protein-dependent transport system inner membrane component TM0502 PF12911 N-terminal TM domain of oligopeptide transport permease C TM0503 PF00528 Binding-protein-dependent transport system inner membrane component TM0505 PF00166 Chaperonin 10 Kd subunit TM0506 PF00118 TCP-1/cpn60 chaperonin family TM0508 PF01661 Macro domain TM0508 PF16193 AAA C-terminal domain TM0508 PF05496 Holliday junction DNA helicase RuvB P-loop domain TM0508 PF12002 MgsA AAA+ ATPase C terminal TM0509 PF16363 GDP-mannose 4,6 dehydratase TM0511 PF03167 Uracil DNA glycosylase superfamily TM0513 PF01078 Magnesium chelatase, subunit ChlI TM0513 PF13335 Magnesium chelatase, subunit ChlI C-terminal TM0514 PF04073 Aminoacyl-tRNA editing domain TM0514 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM0514 PF03129 Anticodon binding domain TM0515 PF04055 Radical SAM superfamily TM0515 PF16199 Radical_SAM C-terminal domain TM0521 PF00227 Proteasome subunit TM0522 PF00004 ATPase family associated with various cellular activities (AAA) TM0522 PF07724 AAA domain (Cdc48 subfamily) TM0522 PF10431 C-terminal, D2-small domain, of ClpB protein TM0526 PF17209 Hfq protein TM0527 PF01926 50S ribosome-binding GTPase TM0527 PF13167 GTP-binding GTPase N-terminal TM0527 PF16360 GTP-binding GTPase Middle Region TM0528 PF00551 Formyl transferase TM0528 PF02911 Formyl transferase, C-terminal domain TM0529 PF00403 Heavy-metal-associated domain TM0530 PF00005 ABC transporter TM0530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM0531 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM0532 PF00528 Binding-protein-dependent transport system inner membrane component TM0533 PF12911 N-terminal TM domain of oligopeptide transport permease C TM0533 PF00528 Binding-protein-dependent transport system inner membrane component TM0534 PF04539 Sigma-70 region 3 TM0534 PF04545 Sigma-70, region 4 TM0534 PF03979 Sigma-70 factor, region 1.1 TM0534 PF00140 Sigma-70 factor, region 1.2 TM0534 PF04542 Sigma-70 region 2 TM0537 PF13514 AAA domain TM0538 PF01545 Cation efflux family TM0539 PF00291 Pyridoxal-phosphate dependent enzyme TM0541 PF05681 Fumarate hydratase (Fumerase) TM0541 PF05683 Fumarase C-terminus TM0542 PF00390 Malic enzyme, N-terminal domain TM0542 PF03949 Malic enzyme, NAD binding domain TM0544 PF00005 ABC transporter TM0545 PF00288 GHMP kinases N terminal domain TM0546 PF00291 Pyridoxal-phosphate dependent enzyme TM0547 PF13840 ACT domain TM0547 PF01842 ACT domain TM0547 PF00696 Amino acid kinase family TM0548 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TM0548 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM0548 PF00205 Thiamine pyrophosphate enzyme, central domain TM0549 PF10369 Small subunit of acetolactate synthase TM0550 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TM0550 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TM0551 PF00920 Dehydratase family TM0552 PF00682 HMGL-like TM0552 PF08502 LeuA allosteric (dimerisation) domain TM0553 PF00682 HMGL-like TM0553 PF08502 LeuA allosteric (dimerisation) domain TM0554 PF00330 Aconitase family (aconitate hydratase) TM0555 PF00694 Aconitase C-terminal domain TM0556 PF00180 Isocitrate/isopropylmalate dehydrogenase TM0557 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TM0557 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TM0557 PF02142 MGS-like domain TM0558 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TM0558 PF00117 Glutamine amidotransferase class-I TM0561 PF01544 CorA-like Mg2+ transporter protein TM0565 PF17746 SfsA N-terminal OB domain TM0565 PF03749 Sugar fermentation stimulation protein RE domain TM0567 PF02082 Transcriptional regulator TM0570 PF00448 SRP54-type protein, GTPase domain TM0570 PF02881 SRP54-type protein, helical bundle domain TM0571 PF17820 PDZ domain TM0571 PF13180 PDZ domain TM0572 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TM0573 PF00795 Carbon-nitrogen hydrolase TM0574 PF02547 Queuosine biosynthesis protein TM0575 PF02075 Crossover junction endodeoxyribonuclease RuvC TM0576 PF14579 Helix-hairpin-helix motif TM0576 PF02811 PHP domain TM0576 PF07733 Bacterial DNA polymerase III alpha NTPase domain TM0576 PF00929 Exonuclease TM0576 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TM0577 PF00583 Acetyltransferase (GNAT) family TM0578 PF14748 Pyrroline-5-carboxylate reductase dimerisation TM0578 PF03807 NADP oxidoreductase coenzyme F420-dependent TM0579 PF11734 TilS substrate C-terminal domain TM0579 PF01171 PP-loop family TM0580 PF17862 AAA+ lid domain TM0580 PF06480 FtsH Extracellular TM0580 PF01434 Peptidase family M41 TM0580 PF00004 ATPase family associated with various cellular activities (AAA) TM0583 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TM0583 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TM0583 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TM0585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TM0585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TM0586 PF00892 EamA-like transporter family TM0587 PF01368 DHH family TM0587 PF07085 DRTGG domain TM0587 PF02833 DHHA2 domain TM0587 PF00571 CBS domain TM0590 PF03717 Penicillin-binding Protein dimerisation domain TM0590 PF00905 Penicillin binding protein transpeptidase domain TM0591 PF00005 ABC transporter TM0592 PF00528 Binding-protein-dependent transport system inner membrane component TM0593 PF00497 Bacterial extracellular solute-binding proteins, family 3 TM0594 PF00860 Permease family TM0596 PF00528 Binding-protein-dependent transport system inner membrane component TM0598 PF00528 Binding-protein-dependent transport system inner membrane component TM0603 PF01250 Ribosomal protein S6 TM0604 PF00436 Single-strand binding protein family TM0605 PF01084 Ribosomal protein S18 TM0607 PF00753 Metallo-beta-lactamase superfamily TM0607 PF16123 Hydroxyacylglutathione hydrolase C-terminus TM0610 PF02350 UDP-N-acetylglucosamine 2-epimerase TM0618 PF13087 AAA domain TM0618 PF13195 Protein of unknown function (DUF4011) TM0618 PF13195 Protein of unknown function (DUF4011) TM0618 PF13086 AAA domain TM0618 PF13087 AAA domain TM0618 PF13086 AAA domain TM0619 PF13439 Glycosyltransferase Family 4 TM0619 PF00534 Glycosyl transferases group 1 TM0622 PF13439 Glycosyltransferase Family 4 TM0622 PF00534 Glycosyl transferases group 1 TM0624 PF00534 Glycosyl transferases group 1 TM0624 PF13439 Glycosyltransferase Family 4 TM0627 PF13439 Glycosyltransferase Family 4 TM0627 PF00534 Glycosyl transferases group 1 TM0630 PF16363 GDP-mannose 4,6 dehydratase TM0631 PF00534 Glycosyl transferases group 1 TM0631 PF13477 Glycosyl transferase 4-like TM0632 PF02397 Bacterial sugar transferase TM0633 PF10135 Rod binding protein TM0633 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TM0638 PF10531 SLBB domain TM0638 PF02563 Polysaccharide biosynthesis/export protein TM0638 PF18412 Outer-membrane lipoprotein Wza C-terminal domain TM0640 PF13419 Haloacid dehalogenase-like hydrolase TM0643 PF03415 Clostripain family TM0645 PF02540 NAD synthase TM0647 PF02542 YgbB family TM0653 PF00919 Uncharacterized protein family UPF0004 TM0653 PF04055 Radical SAM superfamily TM0653 PF01938 TRAM domain TM0654 PF17284 Spermidine synthase tetramerisation domain TM0655 PF02675 S-adenosylmethionine decarboxylase TM0656 PF01381 Helix-turn-helix TM0657 PF02915 Rubrerythrin TM0658 PF01880 Desulfoferrodoxin TM0659 PF00301 Rubredoxin TM0660 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase TM0662 PF00550 Phosphopantetheine attachment site TM0665 PF00291 Pyridoxal-phosphate dependent enzyme TM0666 PF00132 Bacterial transferase hexapeptide (six repeats) TM0667 PF01026 TatD related DNase TM0668 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TM0675 PF06289 Flagellar and Swarming motility proteins TM0676 PF01618 MotA/TolQ/ExbB proton channel family TM0677 PF00691 OmpA family TM0677 PF13677 Membrane MotB of proton-channel complex MotA/MotB TM0679 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TM0679 PF02154 Flagellar motor switch protein FliM TM0680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TM0680 PF04509 CheC-like family TM0680a PF04509 CheC-like family TM0680a PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TM0686 PF12169 DNA polymerase III subunits gamma and tau domain III TM0687 PF02575 YbaB/EbfC DNA-binding family TM0688 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TM0688 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TM0689 PF00162 Phosphoglycerate kinase TM0689 PF00121 Triosephosphate isomerase TM0692 PF01648 4'-phosphopantetheinyl transferase superfamily TM0694 PF05697 Bacterial trigger factor protein (TF) TM0694 PF05698 Bacterial trigger factor protein (TF) C-terminus TM0695 PF00574 Clp protease TM0698 PF00813 FliP family TM0700 PF00072 Response regulator receiver domain TM0701 PF01584 CheW-like domain TM0702 PF01627 Hpt domain TM0702 PF01584 CheW-like domain TM0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM0702 PF02895 Signal transducing histidine kinase, homodimeric domain TM0702 PF07194 P2 response regulator binding domain TM0703 PF00994 Probable molybdopterin binding domain TM0703 PF18146 Damage-inducible protein CinA KH domain TM0703 PF02464 Competence-damaged protein TM0705 PF00005 ABC transporter TM0707 PF02527 rRNA small subunit methyltransferase G TM0708 PF03099 Biotin/lipoate A/B protein ligase family TM0709 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TM0715 PF12627 Probable RNA and SrmB- binding site of polymerase A TM0715 PF01743 Poly A polymerase head domain TM0715 PF01368 DHH family TM0715 PF02272 DHHA1 domain TM0715 PF00571 CBS domain TM0716 PF01039 Carboxyl transferase domain TM0717 PF00364 Biotin-requiring enzyme TM0718 PF01584 CheW-like domain TM0719 PF01406 tRNA synthetases class I (C) catalytic domain TM0719 PF09190 DALR domain TM0720 PF00464 Serine hydroxymethyltransferase TM0722 PF17876 Cold shock domain TM0722 PF00575 S1 RNA binding domain TM0722 PF00773 RNB domain TM0722 PF08206 Ribonuclease B OB domain TM0724 PF01699 Sodium/calcium exchanger protein TM0726 PF01523 Putative modulator of DNA gyrase TM0727 PF01523 Putative modulator of DNA gyrase TM0729 PF02824 TGS domain TM0729 PF13291 ACT domain TM0729 PF04607 Region found in RelA / SpoT proteins TM0730 PF02580 D-Tyr-tRNA(Tyr) deacylase TM0731 PF02677 Epoxyqueuosine reductase QueH TM0734 PF01134 Glucose inhibited division protein A TM0736 PF01238 Phosphomannose isomerase type I TM0739 PF01966 HD domain TM0740 PF03129 Anticodon binding domain TM0740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM0740 PF02824 TGS domain TM0740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM0741 PF01467 Cytidylyltransferase-like TM0742 PF00149 Calcineurin-like phosphoesterase TM0744 PF00534 Glycosyl transferases group 1 TM0744 PF13439 Glycosyltransferase Family 4 TM0747 PF13180 PDZ domain TM0747 PF03572 Peptidase family S41 TM0751 PF00485 Phosphoribulokinase / Uridine kinase family TM0752 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM0752 PF02056 Family 4 glycosyl hydrolase TM0753 PF01209 ubiE/COQ5 methyltransferase family TM0754 PF18267 Rubredoxin NAD+ reductase C-terminal domain TM0754 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0754 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TM0754 PF04324 BFD-like [2Fe-2S] binding domain TM0755 PF00753 Metallo-beta-lactamase superfamily TM0755 PF00258 Flavodoxin TM0756 PF00535 Glycosyl transferase family 2 TM0757 PF00535 Glycosyl transferase family 2 TM0757 PF13181 Tetratricopeptide repeat TM0758 PF00669 Bacterial flagellin N-terminal helical region TM0758 PF00700 Bacterial flagellin C-terminal helical region TM0762 PF00318 Ribosomal protein S2 TM0763 PF01906 Putative heavy-metal-binding TM0765 PF00005 ABC transporter TM0766 PF07702 UTRA domain TM0766 PF00392 Bacterial regulatory proteins, gntR family TM0767 PF00128 Alpha amylase, catalytic domain TM0767 PF02806 Alpha amylase, C-terminal all-beta domain TM0767 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TM0768 PF01926 50S ribosome-binding GTPase TM0769 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TM0769 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TM0769 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TM0769 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TM0770 PF18693 TRAM domain TM0770 PF04055 Radical SAM superfamily TM0770 PF00919 Uncharacterized protein family UPF0004 TM0771 PF09115 DNA polymerase III, delta subunit, C terminal TM0772 PF04468 PSP1 C-terminal conserved region TM0773 PF11146 Protein of unknown function (DUF2905) TM0775 PF04760 Translation initiation factor IF-2, N-terminal region TM0775 PF11987 Translation-initiation factor 2 TM0775 PF00009 Elongation factor Tu GTP binding domain TM0780 PF00578 AhpC/TSA family TM0785 PF04454 Encapsulating protein for peroxidase TM0788 PF01964 Radical SAM ThiC family TM0790 PF10120 Thiamine-phosphate synthase TM0790 PF08543 Phosphomethylpyrimidine kinase TM0791 PF14489 QueF-like protein TM0792 PF02592 Putative vitamin uptake transporter TM0793 PF00005 ABC transporter TM0797 PF04029 2-phosphosulpholactate phosphatase TM0798 PF00698 Acyl transferase domain TM0799 PF02632 BioY family TM0800 PF03060 Nitronate monooxygenase TM0801 PF07977 FabA-like domain TM0802 PF02801 Beta-ketoacyl synthase, C-terminal domain TM0802 PF00109 Beta-ketoacyl synthase, N-terminal domain TM0803 PF00117 Glutamine amidotransferase class-I TM0803 PF06418 CTP synthase N-terminus TM0804 PF02811 PHP domain TM0805 PF00953 Glycosyl transferase family 4 TM0807 PF10417 C-terminal domain of 1-Cys peroxiredoxin TM0807 PF00578 AhpC/TSA family TM0808 PF00480 ROK family TM0809 PF00933 Glycosyl hydrolase family 3 N terminal domain TM0810 PF01547 Bacterial extracellular solute-binding protein TM0811 PF00528 Binding-protein-dependent transport system inner membrane component TM0812 PF00528 Binding-protein-dependent transport system inner membrane component TM0813 PF01380 SIS domain TM0814 PF01979 Amidohydrolase family TM0815 PF01554 MatE TM0818 PF03808 Glycosyl transferase WecB/TagA/CpsF family TM0819 PF00860 Permease family TM0820 PF00465 Iron-containing alcohol dehydrogenase TM0821 PF01409 tRNA synthetases class II core domain (F) TM0821 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TM0822 PF01588 Putative tRNA binding domain TM0822 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TM0822 PF03483 B3/4 domain TM0822 PF03147 Ferredoxin-fold anticodon binding domain TM0822 PF03484 tRNA synthetase B5 domain TM0823 PF18665 Tetracyclin repressor-like, C-terminal domain TM0823 PF00440 Bacterial regulatory proteins, tetR family TM0825 PF04055 Radical SAM superfamily TM0825 PF06463 Molybdenum Cofactor Synthesis C TM0827 PF00005 ABC transporter TM0827 PF08402 TOBE domain TM0828 PF00294 pfkB family carbohydrate kinase TM0830 PF04055 Radical SAM superfamily TM0830 PF00919 Uncharacterized protein family UPF0004 TM0831 PF01063 Amino-transferase class IV TM0833 PF00204 DNA gyrase B TM0833 PF01751 Toprim domain TM0833 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM0833 PF00986 DNA gyrase B subunit, carboxyl terminus TM0835 PF02491 SHS2 domain inserted in FTSA TM0835 PF11983 Membrane-attachment and polymerisation-promoting switch TM0836 PF00091 Tubulin/FtsZ family, GTPase domain TM0836 PF12327 FtsZ family, C-terminal domain TM0837 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TM0837 PF00437 Type II/IV secretion system protein TM0839 PF01098 Cell cycle protein TM0842 PF00072 Response regulator receiver domain TM0843 PF07837 Formiminotransferase domain, N-terminal subdomain TM0843 PF02971 Formiminotransferase domain TM0844 PF02590 Predicted SPOUT methyltransferase TM0845 PF00571 CBS domain TM0845 PF03471 Transporter associated domain TM0846 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TM0847 PF07650 KH domain TM0847 PF01926 50S ribosome-binding GTPase TM0848 PF01926 50S ribosome-binding GTPase TM0849 PF00684 DnaJ central domain TM0849 PF01556 DnaJ C terminal domain TM0849 PF00226 DnaJ domain TM0850 PF01025 GrpE TM0851 PF01628 HrcA protein C terminal domain TM0852 PF01300 Telomere recombination TM0852 PF03481 Putative GTP-binding controlling metal-binding TM0853 PF00672 HAMP domain TM0853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM0853 PF00512 His Kinase A (phospho-acceptor) domain TM0853 PF13426 PAS domain TM0853 PF14827 Double sensory domain of two-component sensor kinase TM0854 PF08668 HDOD domain TM0855 PF02033 Ribosome-binding factor A TM0856 PF01509 TruB family pseudouridylate synthase (N terminal domain) TM0856 PF01472 PUA domain TM0856 PF16198 tRNA pseudouridylate synthase B C-terminal domain TM0857 PF06574 FAD synthetase TM0857 PF01687 Riboflavin kinase TM0859 PF02699 Preprotein translocase subunit TM0860 PF07549 SecD/SecF GG Motif TM0860 PF02355 Protein export membrane protein TM0861 PF07549 SecD/SecF GG Motif TM0861 PF02355 Protein export membrane protein TM0862 PF00483 Nucleotidyl transferase TM0863 PF03948 Ribosomal protein L9, C-terminal domain TM0863 PF01281 Ribosomal protein L9, N-terminal domain TM0864 PF12706 Beta-lactamase superfamily domain TM0864 PF00753 Metallo-beta-lactamase superfamily TM0866 PF01145 SPFH domain / Band 7 family TM0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0868 PF13192 Thioredoxin domain TM0869 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM0870 PF03717 Penicillin-binding Protein dimerisation domain TM0870 PF03793 PASTA domain TM0870 PF00905 Penicillin binding protein transpeptidase domain TM0872 PF01795 MraW methylase family TM0874 PF00814 Glycoprotease family TM0876 PF16916 Dimerisation domain of Zinc Transporter TM0876 PF01545 Cation efflux family TM0877 PF00113 Enolase, C-terminal TIM barrel domain TM0877 PF03952 Enolase, N-terminal domain TM0878 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TM0878 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TM0878 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TM0880 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TM0881 PF04204 Homoserine O-succinyltransferase TM0882 PF01053 Cys/Met metabolism PLP-dependent enzyme TM0883 PF03309 Type III pantothenate kinase TM0886 PF00905 Penicillin binding protein transpeptidase domain TM0886 PF00912 Transglycosylase TM0887 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TM0887 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TM0889 PF13288 DXP reductoisomerase C-terminal domain TM0889 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TM0889 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TM0890 PF17820 PDZ domain TM0890 PF02163 Peptidase family M50 TM0891 PF04551 GcpE protein TM0892 PF03448 MgtE intracellular N domain TM0892 PF01769 Divalent cation transporter TM0892 PF00571 CBS domain TM0893 PF02673 Bacitracin resistance protein BacA TM0895 PF00534 Glycosyl transferases group 1 TM0895 PF08323 Starch synthase catalytic domain TM0896 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TM0896 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TM0897 PF04232 Stage V sporulation protein S (SpoVS) TM0902 PF04545 Sigma-70, region 4 TM0902 PF04539 Sigma-70 region 3 TM0902 PF04542 Sigma-70 region 2 TM0903 PF03975 CheD chemotactic sensory transduction TM0904 PF04509 CheC-like family TM0906 PF10609 NUBPL iron-transfer P-loop NTPase TM0907 PF00448 SRP54-type protein, GTPase domain TM0908 PF00771 FHIPEP family TM0909 PF01312 FlhB HrpN YscU SpaS Family TM0910 PF01311 Bacterial export proteins, family 1 TM0911 PF01008 Initiation factor 2 subunit family TM0912 PF13145 PPIC-type PPIASE domain TM0913 PF03819 MazG nucleotide pyrophosphohydrolase domain TM0914 PF01865 Protein of unknown function DUF47 TM0915 PF01351 Ribonuclease HII TM0917 PF01384 Phosphate transporter family TM0918 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM0920 PF00465 Iron-containing alcohol dehydrogenase TM0922 PF03853 YjeF-related protein N-terminus TM0922 PF01256 Carbohydrate kinase TM0925 PF02390 Putative methyltransferase TM0926 PF00308 Bacterial dnaA protein TM0926 PF08299 Bacterial dnaA protein helix-turn-helix TM0926 PF11638 DnaA N-terminal domain TM0928 PF16236 Domain of unknown function (DUF4895) TM0929 PF13203 Putative metallopeptidase domain TM0929 PF09967 VWA-like domain (DUF2201) TM0934 PF03600 Citrate transporter TM0935 PF00571 CBS domain TM0935 PF00478 IMP dehydrogenase / GMP reductase domain TM0936 PF01979 Amidohydrolase family TM0939 PF02261 Aspartate decarboxylase TM0940 PF00849 RNA pseudouridylate synthase TM0940 PF01479 S4 domain TM0943 PF00120 Glutamine synthetase, catalytic domain TM0943 PF03951 Glutamine synthetase, beta-Grasp domain TM0949 PF00356 Bacterial regulatory proteins, lacI family TM0952 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM0952 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM0953 PF02779 Transketolase, pyrimidine binding domain TM0953 PF02780 Transketolase, C-terminal domain TM0954 PF00456 Transketolase, thiamine diphosphate binding domain TM0955 PF02653 Branched-chain amino acid transport system / permease component TM0956 PF00005 ABC transporter TM0958 PF13407 Periplasmic binding protein domain TM0959 PF05025 RbsD / FucU transport protein family TM0960 PF00294 pfkB family carbohydrate kinase TM0961 PF04011 LemA family TM0964 PF01969 Protein of unknown function DUF111 TM0965 PF00731 AIR carboxylase TM0966 PF02540 NAD synthase TM0967 PF02899 Phage integrase, N-terminal SAM-like domain TM0967 PF00589 Phage integrase family TM0972 PF00990 Diguanylate cyclase, GGDEF domain TM0973 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM0978 PF01206 Sulfurtransferase TusA TM0982 PF04143 Sulphur transport TM0983 PF01206 Sulfurtransferase TusA TM0984 PF00207 Alpha-2-macroglobulin family TM0984 PF07703 Alpha-2-macroglobulin bait region domain TM0984 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TM0984 PF01835 MG2 domain TM0984 PF07678 A-macroglobulin TED domain TM0986 PF06672 Protein of unknown function (DUF1175) TM0990 PF00271 Helicase conserved C-terminal domain TM0990 PF00176 SNF2 family N-terminal domain TM1000 PF05168 HEPN domain TM1005 PF06719 AraC-type transcriptional regulator N-terminus TM1005 PF12833 Helix-turn-helix domain TM1006 PF00248 Aldo/keto reductase family TM1009 PF00248 Aldo/keto reductase family TM1015 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TM1015 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TM1021 PF07690 Major Facilitator Superfamily TM1022 PF12146 Serine aminopeptidase, S33 TM1028 PF13732 Domain of unknown function (DUF4162) TM1028 PF00005 ABC transporter TM1031 PF00462 Glutaredoxin TM1033 PF01050 Mannose-6-phosphate isomerase TM1033 PF00483 Nucleotidyl transferase TM1034 PF02350 UDP-N-acetylglucosamine 2-epimerase TM1035 PF01502 Phosphoribosyl-AMP cyclohydrolase TM1035 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TM1036 PF00977 Histidine biosynthesis protein TM1037 PF00977 Histidine biosynthesis protein TM1038 PF00117 Glutamine amidotransferase class-I TM1039 PF00475 Imidazoleglycerol-phosphate dehydratase TM1040 PF00155 Aminotransferase class I and II TM1041 PF00815 Histidinol dehydrogenase TM1042 PF01634 ATP phosphoribosyltransferase TM1043 PF13393 Histidyl-tRNA synthetase TM1044 PF12323 Helix-turn-helix domain TM1044 PF01385 Probable transposase TM1044 PF07282 Putative transposase DNA-binding domain TM1045 PF03600 Citrate transporter TM1047 PF03775 Septum formation inhibitor MinC, C-terminal domain TM1048 PF05343 M42 glutamyl aminopeptidase TM1049 PF05343 M42 glutamyl aminopeptidase TM1050 PF05343 M42 glutamyl aminopeptidase TM1052 PF10531 SLBB domain TM1054 PF00005 ABC transporter TM1056 PF03091 CutA1 divalent ion tolerance protein TM1057 PF02254 TrkA-N domain TM1057 PF07885 Ion channel TM1059 PF04232 Stage V sporulation protein S (SpoVS) TM1062 PF02837 Glycosyl hydrolases family 2, sugar binding domain TM1062 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TM1062 PF00703 Glycosyl hydrolases family 2 TM1063 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1063 PF00005 ABC transporter TM1064 PF00005 ABC transporter TM1064 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1065 PF00528 Binding-protein-dependent transport system inner membrane component TM1065 PF12911 N-terminal TM domain of oligopeptide transport permease C TM1066 PF00528 Binding-protein-dependent transport system inner membrane component TM1067 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM1068 PF02056 Family 4 glycosyl hydrolase TM1068 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM1069 PF08220 DeoR-like helix-turn-helix domain TM1069 PF00455 DeoR C terminal sensor domain TM1071 PF01261 Xylose isomerase-like TIM barrel TM1073 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM1073 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM1077 PF02569 Pantoate-beta-alanine ligase TM1080 PF02502 Ribose/Galactose Isomerase TM1081 PF01740 STAS domain TM1082 PF01726 LexA DNA binding domain TM1082 PF00717 Peptidase S24-like TM1083 PF01951 Archease protein family (MTH1598/TM1083) TM1084 PF03989 DNA gyrase C-terminal domain, beta-propeller TM1084 PF00521 DNA gyrase/topoisomerase IV, subunit A TM1085 PF01588 Putative tRNA binding domain TM1085 PF08264 Anticodon-binding domain of tRNA TM1085 PF09334 tRNA synthetases class I (M) TM1089 PF02386 Cation transport protein TM1090 PF13393 Histidyl-tRNA synthetase TM1090 PF03129 Anticodon binding domain TM1093 PF00750 tRNA synthetases class I (R) TM1093 PF03485 Arginyl tRNA synthetase N terminal domain TM1093 PF05746 DALR anticodon binding domain TM1094 PF05958 tRNA (Uracil-5-)-methyltransferase TM1095 PF00206 Lyase TM1095 PF10397 Adenylosuccinate lyase C-terminus TM1096 PF00709 Adenylosuccinate synthetase TM1097 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TM1097 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TM1099 PF02223 Thymidylate kinase TM1101 PF12850 Calcineurin-like phosphoesterase superfamily domain TM1102 PF14622 Ribonuclease-III-like TM1102 PF00035 Double-stranded RNA binding motif TM1105 PF00361 Proton-conducting membrane transporter TM1120 PF13416 Bacterial extracellular solute-binding protein TM1121 PF00528 Binding-protein-dependent transport system inner membrane component TM1122 PF00528 Binding-protein-dependent transport system inner membrane component TM1123 PF02465 Flagellar hook-associated protein 2 N-terminus TM1123 PF07195 Flagellar hook-associated protein 2 C-terminus TM1123 PF07196 Flagellin hook IN motif TM1128 PF00210 Ferritin-like domain TM1129 PF01048 Phosphorylase superfamily TM1130 PF01515 Phosphate acetyl/butaryl transferase TM1131 PF00155 Aminotransferase class I and II TM1132 PF17863 AAA lid domain TM1132 PF07726 ATPase family associated with various cellular activities (AAA) TM1136 PF02653 Branched-chain amino acid transport system / permease component TM1137 PF02653 Branched-chain amino acid transport system / permease component TM1137 PF11862 Domain of unknown function (DUF3382) TM1138 PF00005 ABC transporter TM1138 PF12399 Branched-chain amino acid ATP-binding cassette transporter TM1139 PF00005 ABC transporter TM1140 PF00571 CBS domain TM1140 PF00478 IMP dehydrogenase / GMP reductase domain TM1141 PF02683 Cytochrome C biogenesis protein transmembrane region TM1143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM1145 PF01966 HD domain TM1146 PF00672 HAMP domain TM1146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM1147 PF00072 Response regulator receiver domain TM1147 PF01966 HD domain TM1148 PF00180 Isocitrate/isopropylmalate dehydrogenase TM1149 PF00528 Binding-protein-dependent transport system inner membrane component TM1150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM1151 PF00005 ABC transporter TM1151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1152 PF00005 ABC transporter TM1152 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1153 PF00528 Binding-protein-dependent transport system inner membrane component TM1153 PF12911 N-terminal TM domain of oligopeptide transport permease C TM1154 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TM1155 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TM1155 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TM1156 PF04024 PspC domain TM1158 PF00117 Glutamine amidotransferase class-I TM1161 PF00571 CBS domain TM1161 PF01769 Divalent cation transporter TM1161 PF03448 MgtE intracellular N domain TM1162 PF12706 Beta-lactamase superfamily domain TM1163 PF00990 Diguanylate cyclase, GGDEF domain TM1163 PF17155 Gammaproteobacterial periplasmic sensor domain TM1165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TM1166 PF04055 Radical SAM superfamily TM1166 PF06969 HemN C-terminal domain TM1170 PF00072 Response regulator receiver domain TM1172 PF03063 Prismane/CO dehydrogenase family TM1177 PF13419 Haloacid dehalogenase-like hydrolase TM1178 PF00583 Acetyltransferase (GNAT) family TM1179 PF02561 Flagellar protein FliS TM1181 PF00293 NUDIX domain TM1182 PF02463 RecF/RecN/SMC N terminal domain TM1182 PF06470 SMC proteins Flexible Hinge Domain TM1183 PF00248 Aldo/keto reductase family TM1184 PF00990 Diguanylate cyclase, GGDEF domain TM1184 PF03707 Bacterial signalling protein N terminal repeat TM1184 PF00563 EAL domain TM1185 PF02142 MGS-like domain TM1187 PF01594 AI-2E family transporter TM1190 PF08544 GHMP kinases C terminal TM1190 PF10509 Galactokinase galactose-binding signature TM1190 PF00288 GHMP kinases N terminal domain TM1191 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TM1191 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TM1193 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TM1193 PF16353 Domain of unknown function(DUF4981) TM1193 PF02929 Beta galactosidase small chain TM1193 PF02837 Glycosyl hydrolases family 2, sugar binding domain TM1193 PF00703 Glycosyl hydrolases family 2 TM1194 PF00005 ABC transporter TM1194 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1195 PF08533 Beta-galactosidase C-terminal domain TM1195 PF02449 Beta-galactosidase TM1195 PF08532 Beta-galactosidase trimerisation domain TM1196 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1196 PF00005 ABC transporter TM1197 PF00528 Binding-protein-dependent transport system inner membrane component TM1197 PF12911 N-terminal TM domain of oligopeptide transport permease C TM1198 PF00528 Binding-protein-dependent transport system inner membrane component TM1200 PF00356 Bacterial regulatory proteins, lacI family TM1201 PF07745 Glycosyl hydrolase family 53 TM1202 PF00528 Binding-protein-dependent transport system inner membrane component TM1203 PF00528 Binding-protein-dependent transport system inner membrane component TM1203 PF14785 Maltose transport system permease protein MalF P2 domain TM1204 PF01547 Bacterial extracellular solute-binding protein TM1205 PF01899 Na+/H+ ion antiporter subunit TM1206 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TM1209 PF13244 Domain of unknown function (DUF4040) TM1209 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TM1209 PF00361 Proton-conducting membrane transporter TM1209 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TM1210 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TM1211 PF00361 Proton-conducting membrane transporter TM1212 PF00361 Proton-conducting membrane transporter TM1214 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TM1215 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TM1215 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TM1216 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TM1217 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM1217 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TM1218 PF00356 Bacterial regulatory proteins, lacI family TM1219 PF00005 ABC transporter TM1219 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1220 PF00005 ABC transporter TM1220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1221 PF12911 N-terminal TM domain of oligopeptide transport permease C TM1221 PF00528 Binding-protein-dependent transport system inner membrane component TM1222 PF00528 Binding-protein-dependent transport system inner membrane component TM1223 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM1224 PF01325 Iron dependent repressor, N-terminal DNA binding domain TM1224 PF00480 ROK family TM1225 PF04041 beta-1,4-mannooligosaccharide phosphorylase TM1226 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM1228 PF01418 Helix-turn-helix domain, rpiR family TM1228 PF01380 SIS domain TM1229 PF00535 Glycosyl transferase family 2 TM1230 PF00534 Glycosyl transferases group 1 TM1231 PF07748 Glycosyl hydrolases family 38 C-terminal domain TM1231 PF01074 Glycosyl hydrolases family 38 N-terminal domain TM1231 PF09261 Alpha mannosidase middle domain TM1232 PF08402 TOBE domain TM1232 PF00005 ABC transporter TM1233 PF00528 Binding-protein-dependent transport system inner membrane component TM1234 PF00528 Binding-protein-dependent transport system inner membrane component TM1238 PF00580 UvrD/REP helicase N-terminal domain TM1238 PF13361 UvrD-like helicase C-terminal domain TM1240 PF01926 50S ribosome-binding GTPase TM1240 PF06071 Protein of unknown function (DUF933) TM1243 PF01259 SAICAR synthetase TM1244 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TM1246 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TM1246 PF16904 Phosphoribosylformylglycinamidine synthase II C-terminus TM1246 PF02769 AIR synthase related protein, C-terminal domain TM1246 PF00586 AIR synthase related protein, N-terminal domain TM1247 PF00156 Phosphoribosyl transferase domain TM1248 PF00551 Formyl transferase TM1249 PF02142 MGS-like domain TM1249 PF01808 AICARFT/IMPCHase bienzyme TM1250 PF02843 Phosphoribosylglycinamide synthetase, C domain TM1250 PF02844 Phosphoribosylglycinamide synthetase, N domain TM1250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TM1251 PF02769 AIR synthase related protein, C-terminal domain TM1251 PF00586 AIR synthase related protein, N-terminal domain TM1253 PF00795 Carbon-nitrogen hydrolase TM1253 PF02540 NAD synthase TM1254 PF13419 Haloacid dehalogenase-like hydrolase TM1255 PF00155 Aminotransferase class I and II TM1256 PF00005 ABC transporter TM1256 PF00664 ABC transporter transmembrane region TM1258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM1258 PF00512 His Kinase A (phospho-acceptor) domain TM1259 PF00072 Response regulator receiver domain TM1259 PF00486 Transcriptional regulatory protein, C terminal TM1260 PF01895 PhoU domain TM1261 PF00005 ABC transporter TM1262 PF00528 Binding-protein-dependent transport system inner membrane component TM1264 PF12849 PBP superfamily domain TM1269 PF04055 Radical SAM superfamily TM1269 PF06968 Biotin and Thiamin Synthesis associated domain TM1270 PF01053 Cys/Met metabolism PLP-dependent enzyme TM1271 PF07963 Prokaryotic N-terminal methylation motif TM1272 PF01425 Amidase TM1273 PF02637 GatB domain TM1273 PF02934 GatB/GatE catalytic domain TM1276 PF03459 TOBE domain TM1276 PF17912 MalK OB fold domain TM1276 PF00005 ABC transporter TM1277 PF02491 SHS2 domain inserted in FTSA TM1278 PF00488 MutS domain V TM1278 PF01713 Smr domain TM1281 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM1281 PF02056 Family 4 glycosyl hydrolase TM1283 PF02660 Glycerol-3-phosphate acyltransferase TM1284 PF00355 Rieske [2Fe-2S] domain TM1286 PF01717 Cobalamin-independent synthase, Catalytic domain TM1286 PF08267 Cobalamin-independent synthase, N-terminal domain TM1287 PF07883 Cupin domain TM1288 PF04055 Radical SAM superfamily TM1288 PF01018 GTP1/OBG TM1288 PF01926 50S ribosome-binding GTPase TM1291 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TM1292 PF10609 NUBPL iron-transfer P-loop NTPase TM1293 PF01209 ubiE/COQ5 methyltransferase family TM1295 PF00753 Metallo-beta-lactamase superfamily TM1295 PF16123 Hydroxyacylglutathione hydrolase C-terminus TM1297 PF00248 Aldo/keto reductase family TM1302 PF00005 ABC transporter TM1310 PF00005 ABC transporter TM1310 PF00664 ABC transporter transmembrane region TM1313 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TM1314 PF13176 Tetratricopeptide repeat TM1314 PF00931 NB-ARC domain TM1319 PF00664 ABC transporter transmembrane region TM1319 PF00005 ABC transporter TM1321 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TM1324 PF04055 Radical SAM superfamily TM1324 PF13186 Iron-sulfur cluster-binding domain TM1325 PF06463 Molybdenum Cofactor Synthesis C TM1325 PF04055 Radical SAM superfamily TM1327 PF00005 ABC transporter TM1328 PF00005 ABC transporter TM1328 PF00664 ABC transporter transmembrane region TM1340 PF00355 Rieske [2Fe-2S] domain TM1344 PF00312 Ribosomal protein S15 TM1345 PF00575 S1 RNA binding domain TM1345 PF03725 3' exoribonuclease family, domain 2 TM1345 PF01138 3' exoribonuclease family, domain 1 TM1345 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TM1345 PF00013 KH domain TM1346 PF05193 Peptidase M16 inactive domain TM1346 PF00675 Insulinase (Peptidase family M16) TM1347 PF00571 CBS domain TM1347 PF00478 IMP dehydrogenase / GMP reductase domain TM1349 PF01594 AI-2E family transporter TM1350 PF12146 Serine aminopeptidase, S33 TM1351 PF00749 tRNA synthetases class I (E and Q), catalytic domain TM1354 PF00571 CBS domain TM1354 PF00478 IMP dehydrogenase / GMP reductase domain TM1357 PF01139 tRNA-splicing ligase RtcB TM1359 PF00989 PAS fold TM1359 PF00512 His Kinase A (phospho-acceptor) domain TM1359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM1360 PF00072 Response regulator receiver domain TM1360 PF00486 Transcriptional regulatory protein, C terminal TM1361 PF00133 tRNA synthetases class I (I, L, M and V) TM1361 PF06827 Zinc finger found in FPG and IleRS TM1361 PF08264 Anticodon-binding domain of tRNA TM1362 PF00437 Type II/IV secretion system protein TM1363 PF03462 PCRF domain TM1363 PF00472 RF-1 domain TM1364 PF00460 Flagella basal body rod protein TM1365 PF00460 Flagella basal body rod protein TM1365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM1366 PF02049 Flagellar hook-basal body complex protein FliE TM1368 PF00005 ABC transporter TM1369 PF01458 Uncharacterized protein family (UPF0051) TM1370 PF01458 Uncharacterized protein family (UPF0051) TM1371 PF00266 Aminotransferase class-V TM1372 PF01592 NifU-like N terminal domain TM1374 PF00300 Histidine phosphatase superfamily (branch 1) TM1375 PF13416 Bacterial extracellular solute-binding protein TM1376 PF00005 ABC transporter TM1376 PF08402 TOBE domain TM1377 PF00528 Binding-protein-dependent transport system inner membrane component TM1378 PF00528 Binding-protein-dependent transport system inner membrane component TM1379 PF02403 Seryl-tRNA synthetase N-terminal domain TM1379 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TM1380 PF04452 RNA methyltransferase TM1383 PF00288 GHMP kinases N terminal domain TM1384 PF00156 Phosphoribosyl transferase domain TM1385 PF00342 Phosphoglucose isomerase TM1387 PF01121 Dephospho-CoA kinase TM1391 PF02861 Clp amino terminal domain, pathogenicity island component TM1391 PF00004 ATPase family associated with various cellular activities (AAA) TM1391 PF10431 C-terminal, D2-small domain, of ClpB protein TM1391 PF07724 AAA domain (Cdc48 subfamily) TM1391 PF17871 AAA lid domain TM1393 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TM1394 PF01430 Hsp33 protein TM1396 PF02272 DHHA1 domain TM1396 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM1396 PF01411 tRNA synthetases class II (A) TM1398 PF01255 Putative undecaprenyl diphosphate synthase TM1399 PF01765 Ribosome recycling factor TM1400 PF00266 Aminotransferase class-V TM1401 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TM1401 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TM1403 PF13732 Domain of unknown function (DUF4162) TM1403 PF00005 ABC transporter TM1404 PF01061 ABC-2 type transporter TM1405 PF13439 Glycosyltransferase Family 4 TM1405 PF00534 Glycosyl transferases group 1 TM1410 PF03537 Glycoside-hydrolase family GH114 TM1414 PF00251 Glycosyl hydrolases family 32 N-terminal domain TM1414 PF08244 Glycosyl hydrolases family 32 C terminal TM1415 PF00459 Inositol monophosphatase family TM1416 PF01458 Uncharacterized protein family (UPF0051) TM1417 PF00005 ABC transporter TM1425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TM1425 PF00037 4Fe-4S binding domain TM1425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TM1426 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TM1426 PF00037 4Fe-4S binding domain TM1426 PF02906 Iron only hydrogenase large subunit, C-terminal domain TM1426 PF02256 Iron hydrogenase small subunit TM1427 PF06971 Putative DNA-binding protein N-terminus TM1427 PF02629 CoA binding domain TM1428 PF17200 Single Cache domain 2 TM1428 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TM1428 PF00672 HAMP domain TM1429 PF00230 Major intrinsic protein TM1430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TM1430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TM1431 PF04309 Glycerol-3-phosphate responsive antiterminator TM1432 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM1432 PF04324 BFD-like [2Fe-2S] binding domain TM1433 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM1433 PF04324 BFD-like [2Fe-2S] binding domain TM1437 PF00398 Ribosomal RNA adenine dimethylase TM1440 PF01008 Initiation factor 2 subunit family TM1440 PF03061 Thioesterase superfamily TM1441 PF00152 tRNA synthetases class II (D, K and N) TM1441 PF02938 GAD domain TM1441 PF01336 OB-fold nucleic acid binding domain TM1442 PF01740 STAS domain TM1443 PF02224 Cytidylate kinase TM1444 PF02401 LytB protein TM1446 PF01926 50S ribosome-binding GTPase TM1446 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TM1447 PF02660 Glycerol-3-phosphate acyltransferase TM1450 PF03461 TRCF domain TM1450 PF00271 Helicase conserved C-terminal domain TM1450 PF17757 UvrB interaction domain TM1450 PF00270 DEAD/DEAH box helicase TM1450 PF02559 CarD-like/TRCF domain TM1451 PF03979 Sigma-70 factor, region 1.1 TM1451 PF04545 Sigma-70, region 4 TM1451 PF04539 Sigma-70 region 3 TM1451 PF04542 Sigma-70 region 2 TM1451 PF00140 Sigma-70 factor, region 1.2 TM1452 PF08275 DNA primase catalytic core, N-terminal domain TM1452 PF01807 CHC2 zinc finger TM1453 PF00380 Ribosomal protein S9/S16 TM1454 PF00572 Ribosomal protein L13 TM1455 PF12822 ECF transporter, substrate-specific component TM1456 PF01016 Ribosomal L27 protein TM1458 PF00829 Ribosomal prokaryotic L21 protein TM1461 PF02096 60Kd inner membrane protein TM1462 PF01809 Putative membrane protein insertion efficiency factor TM1463 PF00825 Ribonuclease P TM1463a PF00468 Ribosomal protein L34 TM1464 PF04227 Indigoidine synthase A like protein TM1465 PF12557 Cob(I)alamin adenosyltransferase N terminal TM1465 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TM1466 PF01926 50S ribosome-binding GTPase TM1467 PF01966 HD domain TM1468 PF02645 Uncharacterised protein, DegV family COG1307 TM1469 PF00480 ROK family TM1470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM1470 PF07498 Rho termination factor, N-terminal domain TM1470 PF07497 Rho termination factor, RNA-binding domain TM1471 PF01196 Ribosomal protein L17 TM1472 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TM1472 PF01000 RNA polymerase Rpb3/RpoA insert domain TM1472 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TM1473 PF00163 Ribosomal protein S4/S9 N-terminal domain TM1473 PF01479 S4 domain TM1474 PF00411 Ribosomal protein S11 TM1475 PF00416 Ribosomal protein S13/S18 TM1476 PF00444 Ribosomal protein L36 TM1478 PF00557 Metallopeptidase family M24 TM1479 PF05191 Adenylate kinase, active site lid TM1480 PF00344 SecY translocase TM1481 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TM1482 PF00327 Ribosomal protein L30p/L7e TM1483 PF03719 Ribosomal protein S5, C-terminal domain TM1483 PF00333 Ribosomal protein S5, N-terminal domain TM1484 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TM1485 PF00347 Ribosomal protein L6 TM1486 PF00410 Ribosomal protein S8 TM1487 PF00253 Ribosomal protein S14p/S29e TM1488 PF00281 Ribosomal protein L5 TM1488 PF00673 ribosomal L5P family C-terminus TM1489 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TM1489 PF00467 KOW motif TM1490 PF00238 Ribosomal protein L14p/L23e TM1491 PF00366 Ribosomal protein S17 TM1492 PF00831 Ribosomal L29 protein TM1493 PF00252 Ribosomal protein L16p/L10e TM1494 PF00189 Ribosomal protein S3, C-terminal domain TM1494 PF07650 KH domain TM1495 PF00237 Ribosomal protein L22p/L17e TM1496 PF00203 Ribosomal protein S19 TM1497 PF00181 Ribosomal Proteins L2, RNA binding domain TM1497 PF03947 Ribosomal Proteins L2, C-terminal domain TM1498 PF00276 Ribosomal protein L23 TM1499 PF00573 Ribosomal protein L4/L1 family TM1500 PF00297 Ribosomal protein L3 TM1501 PF00338 Ribosomal protein S10p/S20e TM1502 PF03144 Elongation factor Tu domain 2 TM1502 PF00009 Elongation factor Tu GTP binding domain TM1502 PF03143 Elongation factor Tu C-terminal domain TM1503 PF00679 Elongation factor G C-terminus TM1503 PF14492 Elongation Factor G, domain II TM1503 PF03144 Elongation factor Tu domain 2 TM1503 PF00009 Elongation factor Tu GTP binding domain TM1503 PF03764 Elongation factor G, domain IV TM1504 PF00177 Ribosomal protein S7p/S5e TM1505 PF00164 Ribosomal protein S12/S23 TM1507 PF02562 PhoH-like protein TM1508 PF07698 7TM receptor with intracellular HD hydrolase TM1508 PF01966 HD domain TM1508 PF07697 7TM-HD extracellular TM1509 PF02130 Uncharacterized protein family UPF0054 TM1511 PF04298 Putative neutral zinc metallopeptidase TM1512 PF01029 NusB family TM1512 PF01189 16S rRNA methyltransferase RsmB/F TM1513 PF05636 HIGH Nucleotidyl Transferase TM1516 PF01546 Peptidase family M20/M25/M40 TM1516 PF07687 Peptidase dimerisation domain TM1517 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TM1517 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TM1518 PF01842 ACT domain TM1518 PF13840 ACT domain TM1518 PF00696 Amino acid kinase family TM1519 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal TM1519 PF00132 Bacterial transferase hexapeptide (six repeats) TM1519 PF14602 Hexapeptide repeat of succinyl-transferase TM1520 PF01113 Dihydrodipicolinate reductase, N-terminus TM1520 PF05173 Dihydrodipicolinate reductase, C-terminus TM1521 PF00701 Dihydrodipicolinate synthetase family TM1522 PF01678 Diaminopimelate epimerase TM1523 PF02774 Semialdehyde dehydrogenase, dimerisation domain TM1523 PF01118 Semialdehyde dehydrogenase, NAD binding domain TM1527 PF02082 Transcriptional regulator TM1528 PF01040 UbiA prenyltransferase family TM1530 PF01012 Electron transfer flavoprotein domain TM1531 PF01012 Electron transfer flavoprotein domain TM1531 PF00766 Electron transfer flavoprotein FAD-binding domain TM1535 PF00348 Polyprenyl synthetase TM1537 PF02310 B12 binding domain TM1537 PF04055 Radical SAM superfamily TM1539 PF02119 Flagellar P-ring protein TM1540 PF02107 Flagellar L-ring protein TM1542 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM1542 PF00460 Flagella basal body rod protein TM1543 PF00460 Flagella basal body rod protein TM1543 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TM1545 PF03652 Holliday junction resolvase TM1546 PF01368 DHH family TM1546 PF02272 DHHA1 domain TM1546 PF17768 RecJ OB domain TM1546 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TM1547 PF01966 HD domain TM1548 PF02719 Polysaccharide biosynthesis protein TM1549 PF00953 Glycosyl transferase family 4 TM1550 PF07136 Protein of unknown function (DUF1385) TM1551 PF01871 AMMECR1 TM1553 PF02424 ApbE family TM1556 PF02545 Maf-like protein TM1557 PF04002 RadC-like JAB domain TM1559 PF01791 DeoC/LacD family aldolase TM1561 PF01702 Queuine tRNA-ribosyltransferase TM1564 PF00708 Acylphosphatase TM1565 PF02978 Signal peptide binding domain TM1565 PF00448 SRP54-type protein, GTPase domain TM1565 PF02881 SRP54-type protein, helical bundle domain TM1566 PF00886 Ribosomal protein S16 TM1568 PF05239 PRC-barrel domain TM1568 PF01782 RimM N-terminal domain TM1569 PF01746 tRNA (Guanine-1)-methyltransferase TM1570 PF09936 SAM-dependent RNA methyltransferase TM1571 PF01245 Ribosomal protein L19 TM1572 PF10502 Signal peptidase, peptidase S26 TM1574 PF01416 tRNA pseudouridine synthase TM1576 PF01728 FtsJ-like methyltransferase TM1576 PF01479 S4 domain TM1578 PF00271 Helicase conserved C-terminal domain TM1578 PF07517 SecA DEAD-like domain TM1578 PF01043 SecA preprotein cross-linking domain TM1578 PF07516 SecA Wing and Scaffold domain TM1579 PF03462 PCRF domain TM1579 PF00472 RF-1 domain TM1580 PF02954 Bacterial regulatory protein, Fis family TM1580 PF00072 Response regulator receiver domain TM1580 PF00158 Sigma-54 interaction domain TM1584 PF00156 Phosphoribosyl transferase domain TM1585 PF13660 Domain of unknown function (DUF4147) TM1585 PF05161 MOFRL family TM1588 PF00990 Diguanylate cyclase, GGDEF domain TM1590 PF00707 Translation initiation factor IF-3, C-terminal domain TM1590 PF05198 Translation initiation factor IF-3, N-terminal domain TM1591 PF01632 Ribosomal protein L35 TM1592 PF00453 Ribosomal protein L20 TM1593 PF10609 NUBPL iron-transfer P-loop NTPase TM1594 PF00990 Diguanylate cyclase, GGDEF domain TM1595 PF02272 DHHA1 domain TM1595 PF01368 DHH family TM1596 PF01048 Phosphorylase superfamily TM1597 PF01168 Alanine racemase, N-terminal domain TM1598 PF08281 Sigma-70, region 4 TM1598 PF04542 Sigma-70 region 2 TM1601 PF04055 Radical SAM superfamily TM1601 PF18693 TRAM domain TM1601 PF00919 Uncharacterized protein family UPF0004 TM1602 PF08279 HTH domain TM1602 PF02829 3H domain TM1603 PF07690 Major Facilitator Superfamily TM1604 PF00696 Amino acid kinase family TM1605 PF00889 Elongation factor TS TM1606 PF00575 S1 RNA binding domain TM1606 PF10150 Ribonuclease E/G family TM1607 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TM1607 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TM1608 PF02645 Uncharacterised protein, DegV family COG1307 TM1609 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TM1610 PF02874 ATP synthase alpha/beta family, beta-barrel domain TM1610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM1611 PF00231 ATP synthase TM1612 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TM1612 PF02874 ATP synthase alpha/beta family, beta-barrel domain TM1612 PF00306 ATP synthase alpha/beta chain, C terminal domain TM1613 PF00213 ATP synthase delta (OSCP) subunit TM1614 PF00430 ATP synthase B/B' CF(0) TM1615 PF00137 ATP synthase subunit C TM1616 PF00119 ATP synthase A chain TM1618 PF13690 Chemotaxis phosphatase CheX TM1619 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TM1619 PF00476 DNA polymerase family A TM1619 PF01612 3'-5' exonuclease TM1619 PF01367 5'-3' exonuclease, C-terminal SAM fold TM1620 PF02627 Carboxymuconolactone decarboxylase family TM1621 PF03009 Glycerophosphoryl diester phosphodiesterase family TM1623 PF06421 GTP-binding protein LepA C-terminus TM1623 PF00679 Elongation factor G C-terminus TM1623 PF00009 Elongation factor Tu GTP binding domain TM1623 PF03144 Elongation factor Tu domain 2 TM1624 PF02929 Beta galactosidase small chain TM1624 PF16353 Domain of unknown function(DUF4981) TM1624 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TM1624 PF00703 Glycosyl hydrolases family 2 TM1624 PF02837 Glycosyl hydrolases family 2, sugar binding domain TM1626 PF01195 Peptidyl-tRNA hydrolase TM1627 PF01386 Ribosomal L25p family TM1627 PF14693 Ribosomal protein TL5, C-terminal domain TM1628 PF14572 Phosphoribosyl synthetase-associated domain TM1628 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TM1629 PF00132 Bacterial transferase hexapeptide (six repeats) TM1629 PF12804 MobA-like NTP transferase domain TM1629 PF14602 Hexapeptide repeat of succinyl-transferase TM1632 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TM1633 PF05362 Lon protease (S16) C-terminal proteolytic domain TM1633 PF00004 ATPase family associated with various cellular activities (AAA) TM1633 PF02190 ATP-dependent protease La (LON) substrate-binding domain TM1635 PF12320 Type 5 capsule protein repressor C-terminal domain TM1635 PF00149 Calcineurin-like phosphoesterase TM1636 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system TM1638 PF00005 ABC transporter TM1639 PF00970 Oxidoreductase FAD-binding domain TM1639 PF00175 Oxidoreductase NAD-binding domain TM1639 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TM1640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TM1640 PF07992 Pyridine nucleotide-disulphide oxidoreductase TM1641 PF00186 Dihydrofolate reductase TM1642 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TM1642 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TM1642 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TM1642 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TM1643 PF01958 Domain of unknown function DUF108 TM1643 PF03447 Homoserine dehydrogenase, NAD binding domain TM1644 PF02445 Quinolinate synthetase A protein TM1645 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TM1645 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TM1648 PF01966 HD domain TM1650 PF00128 Alpha amylase, catalytic domain TM1651 PF00679 Elongation factor G C-terminus TM1651 PF03764 Elongation factor G, domain IV TM1651 PF14492 Elongation Factor G, domain II TM1651 PF00009 Elongation factor Tu GTP binding domain TM1653 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TM1653 PF00591 Glycosyl transferase family, a/b domain TM1653 PF02885 Glycosyl transferase family, helical bundle domain TM1654 PF16736 Single Cache-like TM1654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TM1654 PF00512 His Kinase A (phospho-acceptor) domain TM1654 PF00989 PAS fold TM1655 PF00072 Response regulator receiver domain TM1655 PF00486 Transcriptional regulatory protein, C terminal TM1657 PF01649 Ribosomal protein S20 TM1658 PF02772 S-adenosylmethionine synthetase, central domain TM1658 PF00438 S-adenosylmethionine synthetase, N-terminal domain TM1658 PF02773 S-adenosylmethionine synthetase, C-terminal domain TM1661 PF01327 Polypeptide deformylase TM1662 PF01975 Survival protein SurE TM1663 PF00005 ABC transporter TM1664 PF05175 Methyltransferase small domain TM1666 PF01546 Peptidase family M20/M25/M40 TM1666 PF07687 Peptidase dimerisation domain TM1667 PF01261 Xylose isomerase-like TIM barrel TM1672 PF01312 FlhB HrpN YscU SpaS Family TM1678 PF01966 HD domain TM1678 PF11871 Domain of unknown function (DUF3391) TM1682 PF00072 Response regulator receiver domain TM1683 PF00313 'Cold-shock' DNA-binding domain TM1684 PF01197 Ribosomal protein L31 TM1685 PF00575 S1 RNA binding domain TM1685 PF01138 3' exoribonuclease family, domain 1 TM1685 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TM1685 PF00013 KH domain TM1685 PF03725 3' exoribonuclease family, domain 2 TM1686 PF03734 L,D-transpeptidase catalytic domain TM1686 PF01476 LysM domain TM1687 PF02441 Flavoprotein TM1687 PF04127 DNA / pantothenate metabolism flavoprotein TM1688 PF01192 RNA polymerase Rpb6 TM1689 PF00625 Guanylate kinase TM1690 PF04025 Domain of unknown function (DUF370) TM1692 PF00266 Aminotransferase class-V TM1694 PF02568 Thiamine biosynthesis protein (ThiI) TM1694 PF02926 THUMP domain TM1696 PF01478 Type IV leader peptidase family TM1696 PF06750 Bacterial Peptidase A24 N-terminal domain TM1697 PF17785 PUA-like domain TM1697 PF10672 S-adenosylmethionine-dependent methyltransferase TM1698 PF00155 Aminotransferase class I and II TM1701 PF01554 MatE TM1703 PF00884 Sulfatase TM1705 PF01336 OB-fold nucleic acid binding domain TM1705 PF00152 tRNA synthetases class II (D, K and N) TM1706 PF01272 Transcription elongation factor, GreA/GreB, C-term TM1706 PF03449 Transcription elongation factor, N-terminal TM1707 PF03477 ATP cone domain TM1708 PF14527 WhiA LAGLIDADG-like domain TM1708 PF02650 WhiA C-terminal HTH domain TM1709 PF01933 Uncharacterised protein family UPF0052 TM1713 PF01205 Uncharacterized protein family UPF0029 TM1713 PF09186 Domain of unknown function (DUF1949) TM1714 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TM1714 PF01565 FAD binding domain TM1715 PF04055 Radical SAM superfamily TM1717 PF16745 RsgA N-terminal domain TM1717 PF03193 RsgA GTPase TM1718 PF00834 Ribulose-phosphate 3 epimerase family TM1719 PF00488 MutS domain V TM1719 PF05190 MutS family domain IV TM1719 PF05192 MutS domain III TM1719 PF05188 MutS domain II TM1719 PF01624 MutS domain I TM1720 PF13673 Acetyltransferase (GNAT) domain TM1723 PF01979 Amidohydrolase family TM1726 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TM1726 PF02272 DHHA1 domain TM1726 PF01411 tRNA synthetases class II (A) TM1728 PF02548 Ketopantoate hydroxymethyltransferase TM1730 PF05496 Holliday junction DNA helicase RuvB P-loop domain TM1730 PF05491 RuvB C-terminal winged helix domain TM1730 PF17864 RuvB AAA lid domain TM1731 PF01168 Alanine racemase, N-terminal domain TM1732 PF02325 YGGT family TM1733 PF01513 ATP-NAD kinase TM1734 PF01895 PhoU domain TM1736 PF03796 DnaB-like helicase C terminal domain TM1736 PF00772 DnaB-like helicase N terminal domain TM1737 PF01048 Phosphorylase superfamily TM1738 PF02535 ZIP Zinc transporter TM1740 PF00636 Ribonuclease III domain TM1741 PF08032 RNA 2'-O ribose methyltransferase substrate binding TM1741 PF00588 SpoU rRNA Methylase family TM1742 PF13344 Haloacid dehalogenase-like hydrolase TM1743 PF00248 Aldo/keto reductase family TM1744 PF01212 Beta-eliminating lyase TM1746 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TM1747 PF00528 Binding-protein-dependent transport system inner membrane component TM1748 PF00528 Binding-protein-dependent transport system inner membrane component TM1748 PF12911 N-terminal TM domain of oligopeptide transport permease C TM1749 PF00005 ABC transporter TM1749 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TM1750 PF00005 ABC transporter TM1751 PF00404 Dockerin type I domain TM1751 PF03425 Carbohydrate binding domain (family 11) TM1751 PF00150 Cellulase (glycosyl hydrolase family 5) TM1753 PF02151 UvrB/uvrC motif TM1753 PF12344 Ultra-violet resistance protein B TM1753 PF04851 Type III restriction enzyme, res subunit TM1753 PF00271 Helicase conserved C-terminal domain TM1753 PF17757 UvrB interaction domain TM1754 PF00871 Acetokinase family TM1755 PF01515 Phosphate acetyl/butaryl transferase TM1756 PF00871 Acetokinase family TM1761 PF12344 Ultra-violet resistance protein B TM1761 PF17757 UvrB interaction domain TM1761 PF02151 UvrB/uvrC motif TM1761 PF00271 Helicase conserved C-terminal domain TM1761 PF04851 Type III restriction enzyme, res subunit TM1762 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TM1762 PF02779 Transketolase, pyrimidine binding domain TM1762 PF02780 Transketolase, C-terminal domain TM1763 PF09285 Elongation factor P, C-terminal TM1763 PF01132 Elongation factor P (EF-P) OB domain TM1763 PF08207 Elongation factor P (EF-P) KOW-like domain TM1765 PF01029 NusB family TM1766 PF01268 Formate--tetrahydrofolate ligase TM1767 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TM1767 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TM1768 PF02601 Exonuclease VII, large subunit TM1768 PF13742 OB-fold nucleic acid binding domain TM1769 PF02609 Exonuclease VII small subunit TM1770 PF02780 Transketolase, C-terminal domain TM1770 PF02779 Transketolase, pyrimidine binding domain TM1770 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TM1772 PF02734 DAK2 domain TM1772 PF13684 Dihydroxyacetone kinase family TM1774 PF01676 Metalloenzyme superfamily TM1774 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TM1776 PF01475 Ferric uptake regulator family TM1777 PF08529 NusA N-terminal domain TM1777 PF00575 S1 RNA binding domain TM1777 PF13184 NusA-like KH domain TM1778 PF17384 RimP C-terminal SH3 domain TM1778 PF02576 RimP N-terminal domain TM1780 PF00764 Arginosuccinate synthase TM1781 PF00206 Lyase TM1782 PF02774 Semialdehyde dehydrogenase, dimerisation domain TM1782 PF01118 Semialdehyde dehydrogenase, NAD binding domain TM1783 PF01960 ArgJ family TM1784 PF00696 Amino acid kinase family TM1785 PF00202 Aminotransferase class-III TM1788 PF03707 Bacterial signalling protein N terminal repeat TM1788 PF00563 EAL domain TM1788 PF00990 Diguanylate cyclase, GGDEF domain TM1796 PF09827 CRISPR associated protein Cas2 TM1797 PF01867 CRISPR associated protein Cas1 TM1799 PF18019 HD domain TM1799 PF18395 Cas3 C-terminal domain TM1799 PF00270 DEAD/DEAH box helicase TM1803 PF00226 DnaJ domain TM1803 PF01556 DnaJ C terminal domain TM1803 PF00684 DnaJ central domain TM1807 PF03787 RAMP superfamily TM1809 PF03787 RAMP superfamily TM1811 PF18211 Csm1 subunit domain B TM1817 PF00133 tRNA synthetases class I (I, L, M and V) TM1817 PF10458 Valyl tRNA synthetase tRNA binding arm TM1817 PF08264 Anticodon-binding domain of tRNA TM1818 PF02417 Chromate transporter TM1820 PF00117 Glutamine amidotransferase class-I TM1820 PF00958 GMP synthase C terminal domain TM1820 PF02568 Thiamine biosynthesis protein (ThiI) TM1822 PF12221 Bacterial membrane protein N terminal TM1822 PF01145 SPFH domain / Band 7 family TM1823 PF01145 SPFH domain / Band 7 family TM1825 PF00885 6,7-dimethyl-8-ribityllumazine synthase TM1826 PF00925 GTP cyclohydrolase II TM1826 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TM1827 PF00677 Lumazine binding domain TM1828 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TM1828 PF01872 RibD C-terminal domain TM1830 PF00990 Diguanylate cyclase, GGDEF domain TM1830 PF08448 PAS fold TM1833 PF00672 HAMP domain TM1833 PF02743 Cache domain TM1833 PF00211 Adenylate and Guanylate cyclase catalytic domain TM1834 PF11975 Family 4 glycosyl hydrolase C-terminal domain TM1834 PF02056 Family 4 glycosyl hydrolase TM1835 PF00128 Alpha amylase, catalytic domain TM1836 PF00528 Binding-protein-dependent transport system inner membrane component TM1839 PF01547 Bacterial extracellular solute-binding protein TM1840 PF00128 Alpha amylase, catalytic domain TM1845 PF03714 Bacterial pullanase-associated domain TM1845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TM1845 PF00128 Alpha amylase, catalytic domain TM1847 PF01325 Iron dependent repressor, N-terminal DNA binding domain TM1847 PF00480 ROK family TM1848 PF06165 Glycosyltransferase family 36 TM1848 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TM1853 PF00528 Binding-protein-dependent transport system inner membrane component TM1854 PF00528 Binding-protein-dependent transport system inner membrane component TM1856 PF00356 Bacterial regulatory proteins, lacI family TM1857 PF01966 HD domain TM1857 PF00013 KH domain TM1857 PF12072 Domain of unknown function (DUF3552) TM1858 PF02631 RecX family TM1859 PF00154 recA bacterial DNA recombination protein TM1861 PF01066 CDP-alcohol phosphatidyltransferase TM1862 PF00919 Uncharacterized protein family UPF0004 TM1862 PF18693 TRAM domain TM1862 PF04055 Radical SAM superfamily TM1865 PF04493 Endonuclease V TM1867 PF00056 lactate/malate dehydrogenase, NAD binding domain TM1867 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TM1868 PF02361 Cobalt transport protein TM1869 PF05362 Lon protease (S16) C-terminal proteolytic domain TM1869 PF13654 AAA domain TM1870 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TM1872 PF01894 Uncharacterised protein family UPF0047 TM1873 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TM1873 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TM1874 PF00313 'Cold-shock' DNA-binding domain TM1875 PF00749 tRNA synthetases class I (E and Q), catalytic domain TM1876 PF12850 Calcineurin-like phosphoesterase superfamily domain TM1878 PF02872 5'-nucleotidase, C-terminal domain TM1878 PF00149 Calcineurin-like phosphoesterase