locus-tag	class	description
TRQ2_RS00010	COG0220	tRNA (guanine-N7-)-methyltransferase activity
TRQ2_RS00025	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
TRQ2_RS00025	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
TRQ2_RS00030	COG0741	lytic transglycosylase activity
TRQ2_RS00045	COG0840	transmembrane signaling receptor activity
TRQ2_RS00050	COG0306	phosphate transporter
TRQ2_RS00060	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
TRQ2_RS00065	COG1392	Phosphate transport regulator
TRQ2_RS00070	COG3956	TIGRFAM MazG family protein
TRQ2_RS00080	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TRQ2_RS00085	COG1684	flagellar biosynthetic protein fliR
TRQ2_RS00090	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ2_RS00095	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ2_RS00100	COG1419	protein localization to endoplasmic reticulum
TRQ2_RS00105	COG0455	bacterial-type flagellum organization
TRQ2_RS00115	COG1776	CheC inhibitor of MCP methylation
TRQ2_RS00120	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
TRQ2_RS00125	COG1191	sigma factor activity
TRQ2_RS00150	COG2359	stage V sporulation protein S
TRQ2_RS00155	COG1085	galactose-1-phosphate uridylyltransferase
TRQ2_RS00160	COG0297	glycogen (starch) synthase activity
TRQ2_RS00175	COG2239	Acts as a magnesium transporter
TRQ2_RS00180	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
TRQ2_RS00185	COG0750	zinc metalloprotease
TRQ2_RS00190	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
TRQ2_RS00200	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TRQ2_RS00225	COG2873	o-acetylhomoserine
TRQ2_RS00230	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
TRQ2_RS00235	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
TRQ2_RS00245	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ2_RS00245	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ2_RS00255	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
TRQ2_RS00265	COG1214	PFAM Peptidase M22, glycoprotease
TRQ2_RS00270	COG0542	response to heat
TRQ2_RS00285	COG0768	penicillin binding
TRQ2_RS00290	COG0492	ferredoxin-NADP+ reductase activity
TRQ2_RS00315	COG1234	tRNA 3'-trailer cleavage
TRQ2_RS00330	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TRQ2_RS00335	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TRQ2_RS00340	COG1862	Preprotein translocase
TRQ2_RS00350	COG0196	riboflavin kinase activity
TRQ2_RS00355	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
TRQ2_RS00365	COG1639	'signal transduction protein
TRQ2_RS00370	COG5002	protein histidine kinase activity
TRQ2_RS00375	COG0009	L-threonylcarbamoyladenylate synthase
TRQ2_RS00400	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
TRQ2_RS00405	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
TRQ2_RS00410	COG0295	cytidine deaminase activity
TRQ2_RS00415	COG4535	Mg2 and Co2 transporter CorC
TRQ2_RS00420	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
TRQ2_RS00430	COG2201	protein-glutamate methylesterase activity
TRQ2_RS00445	COG0772	Belongs to the SEDS family
TRQ2_RS00455	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
TRQ2_RS00460	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
TRQ2_RS00465	COG0849	cell division
TRQ2_RS00475	COG0187	DNA topoisomerase II activity
TRQ2_RS00485	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
TRQ2_RS00490	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_RS00505	COG3842	ATPase activity
TRQ2_RS00510	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
TRQ2_RS00525	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ2_RS00525	COG0072	phenylalanine-tRNA ligase activity
TRQ2_RS00540	COG1979	alcohol dehydrogenase
TRQ2_RS00550	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
TRQ2_RS00570	COG0534	Mate efflux family protein
TRQ2_RS00580	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
TRQ2_RS00585	COG0395	ABC-type sugar transport system, permease component
TRQ2_RS00600	COG1472	Belongs to the glycosyl hydrolase 3 family
TRQ2_RS00605	COG1940	carbohydrate kinase activity
TRQ2_RS00605	COG1846	Transcriptional regulator
TRQ2_RS00610	COG0450	alkyl hydroperoxide reductase
TRQ2_RS00620	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ2_RS00625	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
TRQ2_RS00630	COG0504	CTP synthase activity
TRQ2_RS00635	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
TRQ2_RS00640	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
TRQ2_RS00645	COG2070	2-Nitropropane dioxygenase
TRQ2_RS00650	COG1268	BioY protein
TRQ2_RS00655	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
TRQ2_RS00660	COG2045	Belongs to the ComB family
TRQ2_RS00685	COG1131	(ABC) transporter
TRQ2_RS00690	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
TRQ2_RS00695	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
TRQ2_RS00700	COG1992	Thiamine-phosphate synthase
TRQ2_RS00700	COG0351	phosphomethylpyrimidine kinase
TRQ2_RS00715	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
TRQ2_RS00785	COG1774	PSP1 C-terminal conserved region
TRQ2_RS00795	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_RS00800	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
TRQ2_RS00805	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
TRQ2_RS00810	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
TRQ2_RS00820	COG1131	(ABC) transporter
TRQ2_RS00830	COG0393	Putative heavy-metal-binding
TRQ2_RS00835	COG0052	Belongs to the universal ribosomal protein uS2 family
TRQ2_RS00860	COG0463	Glycosyl transferase, family 2
TRQ2_RS00860	COG0457	Tetratricopeptide repeat
TRQ2_RS00875	COG0426	domain, Protein
TRQ2_RS00880	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TRQ2_RS00885	COG2226	methyltransferase
TRQ2_RS00890	COG1486	melibiose metabolic process
TRQ2_RS00900	COG0572	uridine kinase
TRQ2_RS00915	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TRQ2_RS00920	COG0793	Belongs to the peptidase S41A family
TRQ2_RS00935	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS00960	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_RS00960	COG2199	diguanylate cyclase activity
TRQ2_RS00975	COG1482	cell wall glycoprotein biosynthetic process
TRQ2_RS01000	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
TRQ2_RS01010	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
TRQ2_RS01025	COG0312	modulator of DNA gyrase
TRQ2_RS01030	COG0312	modulator of DNA gyrase
TRQ2_RS01050	COG0557	exoribonuclease II activity
TRQ2_RS01055	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
TRQ2_RS01065	COG0215	cysteine-tRNA ligase activity
TRQ2_RS01070	COG0835	chemotaxis
TRQ2_RS01075	COG5016	pyruvate
TRQ2_RS01075	COG0511	ligase activity, forming carbon-carbon bonds
TRQ2_RS01085	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
TRQ2_RS01090	COG3620	sequence-specific DNA binding
TRQ2_RS01090	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
TRQ2_RS01090	COG0617	tRNA 3'-terminal CCA addition
TRQ2_RS01120	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
TRQ2_RS01125	COG0095	Lipoate-protein ligase
TRQ2_RS01140	COG1136	(ABC) transporter
TRQ2_RS01145	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TRQ2_RS01155	COG2198	Histidine kinase
TRQ2_RS01155	COG0643	Histidine kinase
TRQ2_RS01160	COG0835	chemotaxis
TRQ2_RS01165	COG2201	protein-glutamate methylesterase activity
TRQ2_RS01175	COG1338	Plays a role in the flagellum-specific transport system
TRQ2_RS01190	COG0740	serine-type endopeptidase activity
TRQ2_RS01195	COG0544	peptidyl-prolyl cis-trans isomerase activity
TRQ2_RS01205	COG0736	holo-[acyl-carrier-protein] synthase activity
TRQ2_RS01220	COG0149	triose-phosphate isomerase activity
TRQ2_RS01220	COG0126	phosphoglycerate kinase activity
TRQ2_RS01230	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
TRQ2_RS01240	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
TRQ2_RS01270	COG1776	CheC inhibitor of MCP methylation
TRQ2_RS01270	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ2_RS01275	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ2_RS01285	COG1360	Flagellar Motor Protein
TRQ2_RS01295	COG1582	Flagellar protein (FlbD)
TRQ2_RS01335	COG0084	hydrolase, TatD family'
TRQ2_RS01340	COG1045	serine acetyltransferase
TRQ2_RS01345	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
TRQ2_RS01360	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TRQ2_RS01370	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
TRQ2_RS01375	COG1773	rubredoxin
TRQ2_RS01380	COG2033	superoxide reductase activity
TRQ2_RS01385	COG1592	Rubrerythrin
TRQ2_RS01390	COG1476	TRANSCRIPTIONal
TRQ2_RS01395	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
TRQ2_RS01400	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
TRQ2_RS01405	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_RS01415	COG0561	phosphatase activity
TRQ2_RS01430	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
TRQ2_RS01440	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ2_RS01470	COG1596	polysaccharide export
TRQ2_RS01500	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
TRQ2_RS01530	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
TRQ2_RS01535	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
TRQ2_RS01560	COG1091	dTDP-4-dehydrorhamnose reductase activity
TRQ2_RS01575	COG0297	glycogen (starch) synthase activity
TRQ2_RS01575	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS01610	COG1337	RAMP superfamily
TRQ2_RS01670	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TRQ2_RS01685	COG0629	single-stranded DNA binding
TRQ2_RS01715	COG0395	ABC-type sugar transport system, permease component
TRQ2_RS01720	COG1175	transmembrane transport
TRQ2_RS01730	COG2252	PERMEase
TRQ2_RS01735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
TRQ2_RS01740	COG0765	amino acid transport
TRQ2_RS01750	COG0768	penicillin binding
TRQ2_RS01765	COG1077	Cell shape determining protein MreB Mrl
TRQ2_RS01770	COG0517	IMP dehydrogenase activity
TRQ2_RS01770	COG1227	inorganic diphosphatase activity
TRQ2_RS01775	COG0697	spore germination
TRQ2_RS01780	COG0673	inositol 2-dehydrogenase activity
TRQ2_RS01805	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
TRQ2_RS01820	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
TRQ2_RS01825	COG0456	acetyltransferase
TRQ2_RS01830	COG2176	DNA-directed DNA polymerase activity
TRQ2_RS01835	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
TRQ2_RS01840	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
TRQ2_RS01845	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TRQ2_RS01850	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
TRQ2_RS01855	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
TRQ2_RS01860	COG0552	protein localization to endoplasmic reticulum
TRQ2_RS01875	COG1959	2 iron, 2 sulfur cluster binding
TRQ2_RS01910	COG0598	Magnesium transport protein CorA
TRQ2_RS01925	COG0505	Belongs to the CarA family
TRQ2_RS01935	COG0473	3-isopropylmalate dehydrogenase activity
TRQ2_RS01940	COG0066	3-isopropylmalate dehydratase activity
TRQ2_RS01945	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TRQ2_RS01955	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TRQ2_RS01970	COG0440	acetolactate synthase activity
TRQ2_RS01975	COG0028	Belongs to the TPP enzyme family
TRQ2_RS01980	COG0527	aspartate kinase activity
TRQ2_RS01985	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
TRQ2_RS01990	COG0083	homoserine kinase activity
TRQ2_RS01995	COG1131	(ABC) transporter
TRQ2_RS02010	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
TRQ2_RS02010	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
TRQ2_RS02020	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
TRQ2_RS02030	COG4717	serine-type aminopeptidase activity
TRQ2_RS02045	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TRQ2_RS02050	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS02055	COG0601	transmembrane transport
TRQ2_RS02060	COG0747	negative chemotaxis
TRQ2_RS02065	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS02080	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
TRQ2_RS02095	COG2521	methyltransferase
TRQ2_RS02095	COG2136	Putative SAM-dependent methyltransferase
TRQ2_RS02115	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
TRQ2_RS02145	COG1242	4 iron, 4 sulfur cluster binding
TRQ2_RS02155	COG0606	chelatase, subunit chli
TRQ2_RS02165	COG1573	uracil-dna glycosylase
TRQ2_RS02180	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
TRQ2_RS02180	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
TRQ2_RS02185	COG0459	protein refolding
TRQ2_RS02190	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
TRQ2_RS02195	COG0601	transmembrane transport
TRQ2_RS02200	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS02205	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS02210	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS02220	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS02235	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
TRQ2_RS02240	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
TRQ2_RS02250	COG0180	Tryptophanyl-tRNA synthetase
TRQ2_RS02260	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
TRQ2_RS02265	COG1595	DNA-templated transcription, initiation
TRQ2_RS02270	COG2890	protein-(glutamine-N5) methyltransferase activity
TRQ2_RS02275	COG2151	metal-sulfur cluster biosynthetic enzyme
TRQ2_RS02290	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TRQ2_RS02295	COG1116	anion transmembrane transporter activity
TRQ2_RS02325	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
TRQ2_RS02330	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TRQ2_RS02335	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
TRQ2_RS02340	COG1196	nuclear chromosome segregation
TRQ2_RS02355	COG1335	isochorismatase
TRQ2_RS02390	COG0745	RESPONSE REGULATOR receiver
TRQ2_RS02410	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
TRQ2_RS02415	COG0564	pseudouridine synthase activity
TRQ2_RS02420	COG0587	DNA-directed DNA polymerase activity
TRQ2_RS02440	COG0222	ribosome binding
TRQ2_RS02445	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
TRQ2_RS02460	COG0250	Participates in transcription elongation, termination and antitermination
TRQ2_RS02465	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
TRQ2_RS02475	COG0267	Belongs to the bacterial ribosomal protein bL33 family
TRQ2_RS02505	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TRQ2_RS02510	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
TRQ2_RS02515	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
TRQ2_RS02520	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
TRQ2_RS02525	COG1027	Aspartate ammonia-lyase
TRQ2_RS02530	COG1070	Carbohydrate kinase
TRQ2_RS02540	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_RS02550	COG1802	Transcriptional regulator
TRQ2_RS02555	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
TRQ2_RS02570	COG0747	negative chemotaxis
TRQ2_RS02580	COG1472	Belongs to the glycosyl hydrolase 3 family
TRQ2_RS02585	COG1073	alpha beta
TRQ2_RS02590	COG3458	cephalosporin-C deacetylase activity
TRQ2_RS02595	COG1486	melibiose metabolic process
TRQ2_RS02600	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS02605	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS02610	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS02615	COG0601	transmembrane transport
TRQ2_RS02620	COG0747	negative chemotaxis
TRQ2_RS02635	COG1175	transmembrane transport
TRQ2_RS02640	COG0395	ABC-type sugar transport system, permease component
TRQ2_RS02645	COG0840	transmembrane signaling receptor activity
TRQ2_RS02650	COG1902	pentaerythritol trinitrate reductase activity
TRQ2_RS02675	COG0371	Dehydrogenase
TRQ2_RS02685	COG0739	heme binding
TRQ2_RS02690	COG2201	protein-glutamate methylesterase activity
TRQ2_RS02705	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ2_RS02715	COG0347	Belongs to the P(II) protein family
TRQ2_RS02720	COG0004	ammonium transporteR
TRQ2_RS02730	COG3850	Histidine kinase
TRQ2_RS02730	COG5002	protein histidine kinase activity
TRQ2_RS02745	COG0067	glutamate synthase
TRQ2_RS02755	COG0493	'glutamate synthase
TRQ2_RS02755	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ2_RS02775	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS02785	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
TRQ2_RS02790	COG0446	pyridine nucleotide-disulphide oxidoreductase
TRQ2_RS02805	COG1194	a g-specific adenine glycosylase
TRQ2_RS02825	COG0778	Nitroreductase
TRQ2_RS02840	COG1131	(ABC) transporter
TRQ2_RS02845	COG0730	response to heat
TRQ2_RS02850	COG4869	propanediol catabolic process
TRQ2_RS02855	COG0071	Belongs to the small heat shock protein (HSP20) family
TRQ2_RS02860	COG0443	Heat shock 70 kDa protein
TRQ2_RS02870	COG1438	arginine binding
TRQ2_RS02875	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
TRQ2_RS02890	COG0840	transmembrane signaling receptor activity
TRQ2_RS02900	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
TRQ2_RS02905	COG1362	aminopeptidase activity
TRQ2_RS02910	COG0366	Alpha amylase catalytic
TRQ2_RS02930	COG3956	TIGRFAM MazG family protein
TRQ2_RS02945	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS02950	COG1597	lipid kinase activity
TRQ2_RS02965	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
TRQ2_RS02980	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
TRQ2_RS02985	COG1136	(ABC) transporter
TRQ2_RS02990	COG1136	(ABC) transporter
TRQ2_RS02990	COG0577	efflux transmembrane transporter activity
TRQ2_RS03000	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
TRQ2_RS03005	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
TRQ2_RS03005	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
TRQ2_RS03015	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
TRQ2_RS03020	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
TRQ2_RS03030	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
TRQ2_RS03055	COG1032	radical SAM domain protein
TRQ2_RS03060	COG1073	alpha beta
TRQ2_RS03065	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
TRQ2_RS03070	COG0543	2 iron, 2 sulfur cluster binding
TRQ2_RS03075	COG0167	dihydroorotate dehydrogenase activity
TRQ2_RS03080	COG0284	orotidine-5'-phosphate decarboxylase activity
TRQ2_RS03085	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
TRQ2_RS03090	COG1574	metal-dependent hydrolase with the TIM-barrel fold
TRQ2_RS03110	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TRQ2_RS03115	COG1737	Transcriptional regulator
TRQ2_RS03120	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_RS03125	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TRQ2_RS03135	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TRQ2_RS03150	COG2217	Heavy metal translocating P-type atpase
TRQ2_RS03165	COG0667	Aldo Keto reductase
TRQ2_RS03185	COG0747	negative chemotaxis
TRQ2_RS03190	COG1501	Belongs to the glycosyl hydrolase 31 family
TRQ2_RS03215	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS03220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS03225	COG0601	transmembrane transport
TRQ2_RS03240	COG1063	alcohol dehydrogenase
TRQ2_RS03245	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_RS03250	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
TRQ2_RS03260	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TRQ2_RS03265	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
TRQ2_RS03275	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
TRQ2_RS03275	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
TRQ2_RS03275	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
TRQ2_RS03285	COG1349	DNA-binding transcription factor activity
TRQ2_RS03290	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
TRQ2_RS03300	COG0066	3-isopropylmalate dehydratase activity
TRQ2_RS03305	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TRQ2_RS03310	COG0372	Belongs to the citrate synthase family
TRQ2_RS03315	COG0205	6-phosphofructokinase activity
TRQ2_RS03320	COG1132	(ABC) transporter
TRQ2_RS03325	COG1132	(ABC) transporter
TRQ2_RS03335	COG0371	Dehydrogenase
TRQ2_RS03345	COG0235	Class ii aldolase
TRQ2_RS03355	COG3534	alpha-L-arabinofuranosidase
TRQ2_RS03370	COG0395	ABC-type sugar transport system, permease component
TRQ2_RS03375	COG1175	transmembrane transport
TRQ2_RS03385	COG3507	Belongs to the glycosyl hydrolase 43 family
TRQ2_RS03395	COG3507	Belongs to the glycosyl hydrolase 43 family
TRQ2_RS03420	COG0395	ABC-type sugar transport system, permease component
TRQ2_RS03425	COG1175	transmembrane transport
TRQ2_RS03450	COG0191	fructose-bisphosphate aldolase activity
TRQ2_RS03455	COG0574	Belongs to the PEP-utilizing enzyme family
TRQ2_RS03455	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TRQ2_RS03465	COG0646	methionine synthase
TRQ2_RS03465	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
TRQ2_RS03475	COG0646	methionine synthase
TRQ2_RS03475	COG1410	methionine synthase
TRQ2_RS03485	COG0776	regulation of translation
TRQ2_RS03495	COG1187	pseudouridine synthase activity
TRQ2_RS03505	COG0592	DNA-directed DNA polymerase activity
TRQ2_RS03510	COG0306	phosphate transporter
TRQ2_RS03525	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
TRQ2_RS03530	COG3481	metal-dependent phosphohydrolase, HD sub domain
TRQ2_RS03545	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
TRQ2_RS03550	COG0792	nuclease activity
TRQ2_RS03555	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TRQ2_RS03560	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
TRQ2_RS03565	COG0758	DNA mediated transformation
TRQ2_RS03570	COG2878	Part of a membrane complex involved in electron transport
TRQ2_RS03570	COG1148	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ2_RS03580	COG4660	Part of a membrane complex involved in electron transport
TRQ2_RS03590	COG4658	electron transport chain
TRQ2_RS03595	COG4656	Part of a membrane complex involved in electron transport
TRQ2_RS03600	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ2_RS03620	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
TRQ2_RS03630	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
TRQ2_RS03635	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
TRQ2_RS03650	COG0772	Belongs to the SEDS family
TRQ2_RS03690	COG2515	1-aminocyclopropane-1-carboxylate deaminase
TRQ2_RS03695	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
TRQ2_RS03695	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
TRQ2_RS03705	COG1122	ATPase activity
TRQ2_RS03710	COG1766	The M ring may be actively involved in energy transduction
TRQ2_RS03715	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TRQ2_RS03725	COG1157	protein secretion by the type III secretion system
TRQ2_RS03755	COG0509	glycine decarboxylation via glycine cleavage system
TRQ2_RS03775	COG0469	pyruvate kinase activity
TRQ2_RS03780	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TRQ2_RS03785	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
TRQ2_RS03790	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
TRQ2_RS03815	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
TRQ2_RS03820	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
TRQ2_RS03825	COG0542	response to heat
TRQ2_RS03830	COG0037	tRNA processing
TRQ2_RS03855	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TRQ2_RS03860	COG0390	transport system, permease component
TRQ2_RS03885	COG2359	stage V sporulation protein S
TRQ2_RS03890	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
TRQ2_RS03895	COG4139	cobalamin transport
TRQ2_RS03900	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
TRQ2_RS03940	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_RS03985	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
TRQ2_RS03990	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
TRQ2_RS04000	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TRQ2_RS04005	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
TRQ2_RS04010	COG1110	DNA topoisomerase II activity
TRQ2_RS04015	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
TRQ2_RS04020	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
TRQ2_RS04030	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
TRQ2_RS04035	COG0495	leucyl-tRNA aminoacylation
TRQ2_RS04040	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
TRQ2_RS04045	COG0285	dihydrofolate synthase activity
TRQ2_RS04050	COG0632	four-way junction helicase activity
TRQ2_RS04080	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
TRQ2_RS04085	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
TRQ2_RS04100	COG1785	Belongs to the alkaline phosphatase family
TRQ2_RS04125	COG0333	Belongs to the bacterial ribosomal protein bL32 family
TRQ2_RS04130	COG0416	fatty acid biosynthetic process
TRQ2_RS04135	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
TRQ2_RS04140	COG0799	negative regulation of ribosome biogenesis
TRQ2_RS04145	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
TRQ2_RS04150	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
TRQ2_RS04170	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
TRQ2_RS04175	COG0512	Glutamine amidotransferase of anthranilate synthase
TRQ2_RS04175	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TRQ2_RS04180	COG0134	indole-3-glycerol-phosphate synthase activity
TRQ2_RS04185	COG0135	phosphoribosylanthranilate isomerase activity
TRQ2_RS04190	COG0133	tryptophan synthase activity
TRQ2_RS04195	COG0159	tryptophan synthase activity
TRQ2_RS04200	COG0820	rRNA (adenine-C2-)-methyltransferase activity
TRQ2_RS04210	COG0492	ferredoxin-NADP+ reductase activity
TRQ2_RS04215	COG1335	isochorismatase
TRQ2_RS04220	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
TRQ2_RS04250	COG1108	ABC-type Mn2 Zn2 transport systems permease components
TRQ2_RS04255	COG1121	(ABC) transporter
TRQ2_RS04260	COG0803	Belongs to the bacterial solute-binding protein 9 family
TRQ2_RS04270	COG1509	lysine 2,3-aminomutase activity
TRQ2_RS04275	COG0778	Nitroreductase
TRQ2_RS04295	COG1070	Carbohydrate kinase
TRQ2_RS04300	COG1129	ABC transporter
TRQ2_RS04315	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ2_RS04325	COG1940	carbohydrate kinase activity
TRQ2_RS04335	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
TRQ2_RS04350	COG1079	Belongs to the binding-protein-dependent transport system permease family
TRQ2_RS04355	COG4603	Belongs to the binding-protein-dependent transport system permease family
TRQ2_RS04360	COG3845	ABC transporter
TRQ2_RS04365	COG1744	ABC transporter substrate-binding protein PnrA-like
TRQ2_RS04375	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TRQ2_RS04390	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
TRQ2_RS04395	COG3116	cell division
TRQ2_RS04395	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
TRQ2_RS04400	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
TRQ2_RS04405	COG1459	type II secretion system
TRQ2_RS04445	COG0728	peptidoglycan biosynthetic process
TRQ2_RS04465	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
TRQ2_RS04475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
TRQ2_RS04480	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
TRQ2_RS04485	COG1120	ATPase activity
TRQ2_RS04490	COG3458	cephalosporin-C deacetylase activity
TRQ2_RS04495	COG1472	Belongs to the glycosyl hydrolase 3 family
TRQ2_RS04500	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS04505	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS04510	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS04515	COG0601	transmembrane transport
TRQ2_RS04530	COG1312	Catalyzes the dehydration of D-mannonate
TRQ2_RS04535	COG0246	Mannitol dehydrogenase
TRQ2_RS04545	COG0800	Aldolase
TRQ2_RS04550	COG1414	Transcriptional regulator
TRQ2_RS04565	COG3693	PFAM glycoside hydrolase, family 10
TRQ2_RS04570	COG0601	transmembrane transport
TRQ2_RS04575	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS04580	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS04585	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS04590	COG0747	negative chemotaxis
TRQ2_RS04595	COG3661	Belongs to the glycosyl hydrolase 67 family
TRQ2_RS04615	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
TRQ2_RS04615	COG1918	ferrous iron import across plasma membrane
TRQ2_RS04625	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
TRQ2_RS04635	COG0675	Transposase, IS605 OrfB family
TRQ2_RS04650	COG1132	(ABC) transporter
TRQ2_RS04655	COG0006	proline dipeptidase activity
TRQ2_RS04660	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
TRQ2_RS04660	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
TRQ2_RS04665	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
TRQ2_RS04675	COG0720	synthase
TRQ2_RS04680	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_RS04680	COG2199	diguanylate cyclase activity
TRQ2_RS04715	COG0601	transmembrane transport
TRQ2_RS04725	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS04730	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS04740	COG1472	Belongs to the glycosyl hydrolase 3 family
TRQ2_RS04750	COG0840	transmembrane signaling receptor activity
TRQ2_RS04755	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
TRQ2_RS04760	COG1993	acr, cog1993
TRQ2_RS04765	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
TRQ2_RS04770	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_RS04775	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ2_RS04780	COG0674	pyruvate-flavodoxin oxidoreductase activity
TRQ2_RS04785	COG1144	Oxidoreductase
TRQ2_RS04790	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
TRQ2_RS04825	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
TRQ2_RS04835	COG4948	Mandelate Racemase Muconate Lactonizing
TRQ2_RS04845	COG0737	Belongs to the 5'-nucleotidase family
TRQ2_RS04855	COG0622	Phosphoesterase
TRQ2_RS04865	COG1278	Cold shock
TRQ2_RS04875	COG0432	Pfam Uncharacterised protein family UPF0047
TRQ2_RS04885	COG2894	cell division
TRQ2_RS04890	COG1067	ATP-dependent peptidase activity
TRQ2_RS04895	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
TRQ2_RS04930	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TRQ2_RS04935	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
TRQ2_RS04950	COG1418	mRNA catabolic process
TRQ2_RS04980	COG3459	Glycosyltransferase 36 associated
TRQ2_RS04985	COG2723	6-phospho-beta-galactosidase activity
TRQ2_RS04990	COG1653	transport
TRQ2_RS05010	COG1172	Belongs to the binding-protein-dependent transport system permease family
TRQ2_RS05015	COG1129	ABC transporter
TRQ2_RS05020	COG1940	carbohydrate kinase activity
TRQ2_RS05030	COG1523	belongs to the glycosyl hydrolase 13 family
TRQ2_RS05035	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
TRQ2_RS05055	COG0366	Alpha amylase catalytic
TRQ2_RS05060	COG2182	Extracellular solute-binding protein
TRQ2_RS05065	COG1175	transmembrane transport
TRQ2_RS05070	COG3833	ABC-type maltose transport systems, permease component
TRQ2_RS05075	COG0366	Alpha amylase catalytic
TRQ2_RS05080	COG1486	melibiose metabolic process
TRQ2_RS05085	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
TRQ2_RS05100	COG3706	GGDEF domain
TRQ2_RS05105	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TRQ2_RS05105	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TRQ2_RS05110	COG0307	riboflavin synthase, alpha
TRQ2_RS05115	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TRQ2_RS05115	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TRQ2_RS05130	COG0330	HflC and HflK could
TRQ2_RS05135	COG0330	HflC and HflK could
TRQ2_RS05155	COG2059	Chromate
TRQ2_RS05160	COG0525	valine-tRNA ligase activity
TRQ2_RS05185	COG1353	crispr-associated protein
TRQ2_RS05195	COG1337	RAMP superfamily
TRQ2_RS05225	COG0484	heat shock protein binding
TRQ2_RS05255	COG1518	maintenance of DNA repeat elements
TRQ2_RS05260	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
TRQ2_RS05270	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS05285	COG3337	CRISPR-associated protein (Cas_Cmr5)
TRQ2_RS05340	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
TRQ2_RS05350	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
TRQ2_RS05360	COG0165	Argininosuccinate lyase
TRQ2_RS05385	COG0195	Participates in both transcription termination and antitermination
TRQ2_RS05390	COG0735	belongs to the Fur family
TRQ2_RS05410	COG1461	Dihydroxyacetone kinase
TRQ2_RS05425	COG1722	exodeoxyribonuclease VII activity
TRQ2_RS05455	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
TRQ2_RS05460	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
TRQ2_RS05465	COG0556	nucleotide-excision repair
TRQ2_RS05500	COG3426	butyrate kinase activity
TRQ2_RS05505	COG0280	phosphate acetyltransferase
TRQ2_RS05510	COG3426	butyrate kinase activity
TRQ2_RS05525	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
TRQ2_RS05530	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS05540	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS05545	COG0601	transmembrane transport
TRQ2_RS05560	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
TRQ2_RS05565	COG0667	Aldo Keto reductase
TRQ2_RS05570	COG0647	UMP catabolic process
TRQ2_RS05575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TRQ2_RS05580	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
TRQ2_RS05595	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TRQ2_RS05600	COG0305	Participates in initiation and elongation during chromosome replication
TRQ2_RS05610	COG0704	Plays a role in the regulation of phosphate uptake
TRQ2_RS05625	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
TRQ2_RS05630	COG2255	four-way junction helicase activity
TRQ2_RS05655	COG1394	ATPase activity, coupled to movement of substances
TRQ2_RS05660	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
TRQ2_RS05665	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
TRQ2_RS05685	COG1269	ATP hydrolysis coupled proton transport
TRQ2_RS05705	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_RS05735	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
TRQ2_RS05740	COG1162	GTPase activity
TRQ2_RS05760	COG1739	Uncharacterized protein family UPF0029
TRQ2_RS05780	COG0391	Required for morphogenesis under gluconeogenic growth conditions
TRQ2_RS05810	COG1368	sulfuric ester hydrolase activity
TRQ2_RS05830	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_RS05835	COG0436	Aminotransferase
TRQ2_RS05855	COG0301	tRNA thio-modification
TRQ2_RS05875	COG2052	Domain of unknown function (DUF370)
TRQ2_RS05880	COG0194	GDP metabolic process
TRQ2_RS05890	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
TRQ2_RS05895	COG1376	ErfK ybiS ycfS ynhG family protein
TRQ2_RS05900	COG1185	polyribonucleotide nucleotidyltransferase activity
TRQ2_RS05910	COG1278	Cold shock
TRQ2_RS05915	COG3437	response regulator, receiver
TRQ2_RS05960	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TRQ2_RS05990	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TRQ2_RS06000	COG2813	Specifically methylates the guanine in position
TRQ2_RS06005	COG1122	ATPase activity
TRQ2_RS06030	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
TRQ2_RS06045	COG0745	RESPONSE REGULATOR receiver
TRQ2_RS06050	COG5002	protein histidine kinase activity
TRQ2_RS06065	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TRQ2_RS06080	COG1713	HD superfamily hydrolase involved in NAD metabolism
TRQ2_RS06090	COG1728	Protein conserved in bacteria
TRQ2_RS06095	COG0157	Belongs to the NadC ModD family
TRQ2_RS06130	COG1959	2 iron, 2 sulfur cluster binding
TRQ2_RS06135	COG1575	Belongs to the MenA family. Type 1 subfamily
TRQ2_RS06145	COG2086	electron transfer activity
TRQ2_RS06150	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
TRQ2_RS06155	COG0644	oxidoreductase
TRQ2_RS06180	COG1032	radical SAM domain protein
TRQ2_RS06190	COG1706	bacterial-type flagellum-dependent cell motility
TRQ2_RS06195	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
TRQ2_RS06210	COG4786	Flagellar basal body rod
TRQ2_RS06230	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
TRQ2_RS06230	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
TRQ2_RS06235	COG1078	dGTPase activity
TRQ2_RS06240	COG1086	Polysaccharide biosynthesis protein
TRQ2_RS06245	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TRQ2_RS06250	COG3872	metal-dependent enzyme
TRQ2_RS06255	COG2078	PFAM AMMECR1 domain protein
TRQ2_RS06265	COG1477	protein flavinylation
TRQ2_RS06285	COG2003	Belongs to the UPF0758 family
TRQ2_RS06320	COG1254	Belongs to the acylphosphatase family
TRQ2_RS06325	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
TRQ2_RS06330	COG0228	four-way junction DNA binding
TRQ2_RS06335	COG1837	Belongs to the UPF0109 family
TRQ2_RS06340	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
TRQ2_RS06345	COG0336	Belongs to the RNA methyltransferase TrmD family
TRQ2_RS06350	COG4752	Belongs to the RNA methyltransferase TrmD family
TRQ2_RS06355	COG0335	large ribosomal subunit rRNA binding
TRQ2_RS06360	COG0681	Belongs to the peptidase S26 family
TRQ2_RS06380	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
TRQ2_RS06420	COG1040	competence protein
TRQ2_RS06425	COG2379	hydroxypyruvate reductase
TRQ2_RS06440	COG2203	Gaf domain
TRQ2_RS06440	COG2199	diguanylate cyclase activity
TRQ2_RS06475	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
TRQ2_RS06490	COG0489	protein tyrosine kinase activity
TRQ2_RS06500	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
TRQ2_RS06505	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TRQ2_RS06515	COG1595	DNA-templated transcription, initiation
TRQ2_RS06530	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TRQ2_RS06535	COG1827	regulation of RNA biosynthetic process
TRQ2_RS06540	COG0477	Major facilitator Superfamily
TRQ2_RS06545	COG0528	UMP kinase activity
TRQ2_RS06555	COG1530	ribonuclease E activity
TRQ2_RS06560	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
TRQ2_RS06565	COG1307	EDD domain protein, DegV family
TRQ2_RS06570	COG0355	proton-transporting ATP synthase activity, rotational mechanism
TRQ2_RS06575	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
TRQ2_RS06580	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
TRQ2_RS06585	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
TRQ2_RS06590	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TRQ2_RS06595	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TRQ2_RS06600	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TRQ2_RS06605	COG0356	it plays a direct role in the translocation of protons across the membrane
TRQ2_RS06620	COG1406	Chemotaxis phosphatase CheX
TRQ2_RS06625	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TRQ2_RS06625	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TRQ2_RS06635	COG0584	glycerophosphoryl diester phosphodiesterase
TRQ2_RS06645	COG0481	GTPase activity
TRQ2_RS06650	COG3250	beta-galactosidase activity
TRQ2_RS06670	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
TRQ2_RS06690	COG0802	atpase or kinase
TRQ2_RS06695	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TRQ2_RS06705	COG0420	3'-5' exonuclease activity
TRQ2_RS06710	COG0419	ATPase involved in DNA repair
TRQ2_RS06720	COG1131	(ABC) transporter
TRQ2_RS06725	COG0543	2 iron, 2 sulfur cluster binding
TRQ2_RS06730	COG0493	'glutamate synthase
TRQ2_RS06735	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
TRQ2_RS06740	COG0540	Belongs to the ATCase OTCase family
TRQ2_RS06740	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
TRQ2_RS06750	COG1621	beta-fructofuranosidase activity
TRQ2_RS06755	COG0483	inositol monophosphate 1-phosphatase activity
TRQ2_RS06765	COG0719	Fe-S assembly protein
TRQ2_RS06775	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TRQ2_RS06775	COG1213	nucleotidyl transferase
TRQ2_RS06780	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
TRQ2_RS06790	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TRQ2_RS06805	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
TRQ2_RS06820	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
TRQ2_RS06825	COG0840	transmembrane signaling receptor activity
TRQ2_RS06835	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
TRQ2_RS06870	COG1543	Belongs to the glycosyl hydrolase 57 family
TRQ2_RS06880	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
TRQ2_RS06880	COG2050	protein possibly involved in aromatic compounds catabolism
TRQ2_RS06890	COG1366	Belongs to the anti-sigma-factor antagonist family
TRQ2_RS06915	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TRQ2_RS06930	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
TRQ2_RS06935	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TRQ2_RS06940	COG0358	DNA primase activity
TRQ2_RS06950	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
TRQ2_RS06955	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
TRQ2_RS06960	COG0211	Belongs to the bacterial ribosomal protein bL27 family
TRQ2_RS06985	COG0706	membrane insertase activity
TRQ2_RS06990	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
TRQ2_RS07000	COG0230	Belongs to the bacterial ribosomal protein bL34 family
TRQ2_RS07010	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
TRQ2_RS07020	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
TRQ2_RS07030	COG1307	EDD domain protein, DegV family
TRQ2_RS07040	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
TRQ2_RS07045	COG0203	ribosomal protein L17
TRQ2_RS07050	COG0202	RNA polymerase activity
TRQ2_RS07055	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
TRQ2_RS07060	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
TRQ2_RS07065	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
TRQ2_RS07070	COG0257	Belongs to the bacterial ribosomal protein bL36 family
TRQ2_RS07075	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
TRQ2_RS07085	COG0563	adenylate kinase activity
TRQ2_RS07090	COG0201	protein transport
TRQ2_RS07095	COG0200	Binds to the 23S rRNA
TRQ2_RS07100	COG1841	ribosomal large subunit assembly
TRQ2_RS07105	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
TRQ2_RS07110	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
TRQ2_RS07115	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
TRQ2_RS07120	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
TRQ2_RS07125	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
TRQ2_RS07135	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
TRQ2_RS07140	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
TRQ2_RS07150	COG0255	Belongs to the universal ribosomal protein uL29 family
TRQ2_RS07155	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
TRQ2_RS07170	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
TRQ2_RS07175	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
TRQ2_RS07180	COG0089	rRNA binding
TRQ2_RS07185	COG0088	Forms part of the polypeptide exit tunnel
TRQ2_RS07190	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
TRQ2_RS07195	COG0051	transcription antitermination factor activity, RNA binding
TRQ2_RS07200	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TRQ2_RS07210	COG0049	tRNA binding
TRQ2_RS07215	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
TRQ2_RS07225	COG1702	phosphate starvation-inducible protein PhoH
TRQ2_RS07230	COG1480	7TM receptor with intracellular HD hydrolase
TRQ2_RS07245	COG2738	Putative neutral zinc metallopeptidase
TRQ2_RS07250	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
TRQ2_RS07250	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TRQ2_RS07255	COG1323	Belongs to the UPF0348 family
TRQ2_RS07270	COG1473	amidohydrolase
TRQ2_RS07275	COG0019	diaminopimelate decarboxylase activity
TRQ2_RS07305	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
TRQ2_RS07325	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS07330	COG2342	PFAM TM1410 hypothetical-related protein
TRQ2_RS07355	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS07370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TRQ2_RS07375	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
TRQ2_RS07385	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
TRQ2_RS07390	COG0575	Belongs to the CDS family
TRQ2_RS07420	COG0542	response to heat
TRQ2_RS07440	COG2264	protein methyltransferase activity
TRQ2_RS07445	COG0742	ribosomal rna small subunit methyltransferase
TRQ2_RS07450	COG0237	dephospho-CoA kinase activity
TRQ2_RS07460	COG0166	Belongs to the GPI family
TRQ2_RS07495	COG1177	transmembrane transport
TRQ2_RS07500	COG1176	ABC-type spermidine putrescine transport system, permease component I
TRQ2_RS07505	COG3842	ATPase activity
TRQ2_RS07510	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
TRQ2_RS07520	COG0406	alpha-ribazole phosphatase activity
TRQ2_RS07530	COG0822	iron-sulfur transferase activity
TRQ2_RS07535	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
TRQ2_RS07545	COG0719	Fe-S assembly protein
TRQ2_RS07550	COG0396	ATPase activity
TRQ2_RS07565	COG1677	Flagellar hook-basal body complex protein FliE
TRQ2_RS07575	COG1815	bacterial-type flagellum-dependent cell motility
TRQ2_RS07580	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
TRQ2_RS07590	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
TRQ2_RS07595	COG0745	RESPONSE REGULATOR receiver
TRQ2_RS07600	COG3852	Histidine kinase
TRQ2_RS07625	COG0516	GMP reductase activity
TRQ2_RS07625	COG0517	IMP dehydrogenase activity
TRQ2_RS07645	COG2267	carboxylic ester hydrolase activity
TRQ2_RS07650	COG0628	permease
TRQ2_RS07660	COG0517	IMP dehydrogenase activity
TRQ2_RS07660	COG0516	GMP reductase activity
TRQ2_RS07665	COG0612	Peptidase, M16
TRQ2_RS07675	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
TRQ2_RS07755	COG1132	(ABC) transporter
TRQ2_RS07760	COG4555	ABC transporter
TRQ2_RS07775	COG0641	radical SAM
TRQ2_RS07790	COG1598	PFAM Uncharacterised protein family UPF0150
TRQ2_RS07800	COG1132	(ABC) transporter
TRQ2_RS07805	COG1132	(ABC) transporter
TRQ2_RS07815	COG0457	Tetratricopeptide repeat
TRQ2_RS07820	COG1598	PFAM Uncharacterised protein family UPF0150
TRQ2_RS07855	COG4555	ABC transporter
TRQ2_RS07870	COG0667	Aldo Keto reductase
TRQ2_RS07880	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TRQ2_RS07890	COG2226	methyltransferase
TRQ2_RS07895	COG0489	protein tyrosine kinase activity
TRQ2_RS07900	COG2894	cell division
TRQ2_RS07915	COG0731	radical SAM domain protein
TRQ2_RS07915	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
TRQ2_RS07920	COG0662	Cupin 2, conserved barrel domain protein
TRQ2_RS07940	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TRQ2_RS07955	COG1486	melibiose metabolic process
TRQ2_RS07980	COG3842	ATPase activity
TRQ2_RS08000	COG0154	amidase activity
TRQ2_RS08005	COG2165	general secretion pathway protein
TRQ2_RS08015	COG0626	cystathionine gamma-synthase activity
TRQ2_RS08020	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
TRQ2_RS08055	COG0573	inorganic phosphate transmembrane transporter activity
TRQ2_RS08060	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TRQ2_RS08065	COG0704	Plays a role in the regulation of phosphate uptake
TRQ2_RS08070	COG0745	RESPONSE REGULATOR receiver
TRQ2_RS08085	COG1132	(ABC) transporter
TRQ2_RS08090	COG0436	Aminotransferase
TRQ2_RS08095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TRQ2_RS08100	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TRQ2_RS08100	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
TRQ2_RS08115	COG0151	Belongs to the GarS family
TRQ2_RS08120	COG0138	bifunctional purine biosynthesis protein purh
TRQ2_RS08125	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
TRQ2_RS08130	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
TRQ2_RS08135	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TRQ2_RS08140	COG0047	phosphoribosylformylglycinamidine synthase activity
TRQ2_RS08145	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TRQ2_RS08165	COG0012	GTP binding
TRQ2_RS08175	COG0210	DNA helicase
TRQ2_RS08200	COG3842	ATPase activity
TRQ2_RS08205	COG0383	alpha-mannosidase activity
TRQ2_RS08210	COG0438	transferase activity, transferring glycosyl groups
TRQ2_RS08215	COG0463	Glycosyl transferase, family 2
TRQ2_RS08230	COG0747	negative chemotaxis
TRQ2_RS08235	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
TRQ2_RS08240	COG1940	carbohydrate kinase activity
TRQ2_RS08245	COG4166	transmembrane transport
TRQ2_RS08250	COG0601	transmembrane transport
TRQ2_RS08255	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS08260	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS08265	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS08270	COG1609	Transcriptional regulator
TRQ2_RS08280	COG0649	NAD binding
TRQ2_RS08285	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ2_RS08285	COG0649	NAD binding
TRQ2_RS08290	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ2_RS08300	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TRQ2_RS08305	COG0651	ATP synthesis coupled electron transport
TRQ2_RS08315	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
TRQ2_RS08315	COG2111	Na H antiporter
TRQ2_RS08330	COG2212	antiporter activity
TRQ2_RS08335	COG1863	multisubunit Na H antiporter MnhE subunit
TRQ2_RS08340	COG2182	Extracellular solute-binding protein
TRQ2_RS08345	COG1175	transmembrane transport
TRQ2_RS08350	COG3833	ABC-type maltose transport systems, permease component
TRQ2_RS08360	COG1609	Transcriptional regulator
TRQ2_RS08375	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TRQ2_RS08380	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS08390	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS08395	COG3250	beta-galactosidase activity
TRQ2_RS08400	COG3345	alpha-galactosidase
TRQ2_RS08405	COG1085	galactose-1-phosphate uridylyltransferase
TRQ2_RS08410	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
TRQ2_RS08420	COG2199	diguanylate cyclase activity
TRQ2_RS08435	COG0628	permease
TRQ2_RS08445	COG1803	Methylglyoxal synthase
TRQ2_RS08455	COG0667	Aldo Keto reductase
TRQ2_RS08460	COG1196	nuclear chromosome segregation
TRQ2_RS08465	COG0494	nUDIX hydrolase
TRQ2_RS08475	COG1516	flagellar protein fliS
TRQ2_RS08480	COG0456	acetyltransferase
TRQ2_RS08485	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TRQ2_RS08490	COG1151	hydroxylamine reductase activity
TRQ2_RS08505	COG1028	Short-chain dehydrogenase reductase Sdr
TRQ2_RS08510	COG0058	SHG alpha-glucan phosphorylase activity
TRQ2_RS08520	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TRQ2_RS08525	COG1013	pyruvate-flavodoxin oxidoreductase activity
TRQ2_RS08535	COG2199	diguanylate cyclase activity
TRQ2_RS08545	COG2239	Acts as a magnesium transporter
TRQ2_RS08560	COG0010	Belongs to the arginase family
TRQ2_RS08575	COG1983	PspC domain protein
TRQ2_RS08580	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
TRQ2_RS08585	COG0363	glucosamine-6-phosphate deaminase activity
TRQ2_RS08595	COG0444	Belongs to the ABC transporter superfamily
TRQ2_RS08600	COG4608	Belongs to the ABC transporter superfamily
TRQ2_RS08605	COG0747	negative chemotaxis
TRQ2_RS08610	COG0601	transmembrane transport
TRQ2_RS08625	COG0785	Cytochrome C biogenesis protein
TRQ2_RS08670	COG0714	Associated with various cellular activities
TRQ2_RS08675	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
TRQ2_RS08680	COG0280	phosphate acetyltransferase
TRQ2_RS08685	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
TRQ2_RS08740	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
TRQ2_RS08750	COG1175	transmembrane transport
TRQ2_RS08755	COG1653	transport
TRQ2_RS08830	COG0651	ATP synthesis coupled electron transport
TRQ2_RS08850	COG0622	Phosphoesterase
TRQ2_RS08870	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
TRQ2_RS08875	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
TRQ2_RS08880	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
TRQ2_RS08885	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
TRQ2_RS08910	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
TRQ2_RS08920	COG0569	domain protein
TRQ2_RS08935	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ2_RS08935	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TRQ2_RS08940	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
TRQ2_RS08945	COG1371	PFAM Archease protein family (DUF101 UPF0211)
TRQ2_RS08955	COG1366	Belongs to the anti-sigma-factor antagonist family
TRQ2_RS08960	COG0698	ribose 5-phosphate isomerase
TRQ2_RS08995	COG1070	Carbohydrate kinase
TRQ2_RS09020	COG2359	stage V sporulation protein S
TRQ2_RS09030	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
TRQ2_RS09035	COG1324	tolerance protein
TRQ2_RS09045	COG1137	ATPase activity
TRQ2_RS09055	COG1596	polysaccharide export
TRQ2_RS09055	COG1555	photosystem II stabilization
TRQ2_RS09100	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
TRQ2_RS09110	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
TRQ2_RS09125	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
TRQ2_RS09140	COG0140	phosphoribosyl-ATP diphosphatase activity
TRQ2_RS09140	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
TRQ2_RS09145	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
TRQ2_RS09150	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
TRQ2_RS09150	COG0662	Cupin 2, conserved barrel domain protein
TRQ2_RS09175	COG1131	(ABC) transporter
TRQ2_RS09205	COG2814	Major facilitator Superfamily
TRQ2_RS09230	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
TRQ2_RS09260	COG0656	L-ascorbic acid biosynthetic process
TRQ2_RS09270	COG0667	Aldo Keto reductase
TRQ2_RS09275	COG2207	Transcriptional regulator
TRQ2_RS09310	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
TRQ2_RS09330	COG3234	Protein of unknown function (DUF1175)
TRQ2_RS09340	COG2373	Large extracellular alpha-helical protein
TRQ2_RS09345	COG0425	Belongs to the sulfur carrier protein TusA family
TRQ2_RS09370	COG0425	Belongs to the sulfur carrier protein TusA family
TRQ2_RS09380	COG0840	transmembrane signaling receptor activity
TRQ2_RS09385	COG3706	GGDEF domain
TRQ2_RS09400	COG4974	Belongs to the 'phage' integrase family
TRQ2_RS09405	COG1606	tRNA processing
TRQ2_RS09410	COG1691	(AIR) carboxylase
TRQ2_RS09425	COG1193	negative regulation of DNA recombination
TRQ2_RS09430	COG1193	negative regulation of DNA recombination
TRQ2_RS09440	COG1704	LemA family
TRQ2_RS09470	COG0174	glutamine synthetase
TRQ2_RS09505	COG0402	S-adenosylhomocysteine deaminase activity
TRQ2_RS09510	COG2239	Acts as a magnesium transporter
TRQ2_RS09515	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
TRQ2_RS09535	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TRQ2_RS09540	COG3864	Putative metallopeptidase domain
TRQ2_RS09550	COG1141	Ferredoxin
TRQ2_RS09570	COG0640	Transcriptional regulator