locus-tag class description THIMO_RS00015 PF11638 DnaA N-terminal domain THIMO_RS00015 PF08299 Bacterial dnaA protein helix-turn-helix THIMO_RS00015 PF00308 Bacterial dnaA protein THIMO_RS00020 PF02768 DNA polymerase III beta subunit, C-terminal domain THIMO_RS00020 PF00712 DNA polymerase III beta subunit, N-terminal domain THIMO_RS00020 PF02767 DNA polymerase III beta subunit, central domain THIMO_RS00025 PF11842 Domain of unknown function (DUF3362) THIMO_RS00025 PF08497 Radical SAM N-terminal THIMO_RS00025 PF04055 Radical SAM superfamily THIMO_RS00030 PF12867 DinB superfamily THIMO_RS00030 PF03781 Sulfatase-modifying factor enzyme 1 THIMO_RS00035 PF10017 Histidine-specific methyltransferase, SAM-dependent THIMO_RS00045 PF03050 Transposase IS66 family THIMO_RS00045 PF13817 IS66 C-terminal element THIMO_RS00045 PF13007 Transposase C of IS166 homeodomain THIMO_RS00045 PF13005 zinc-finger binding domain of transposase IS66 THIMO_RS00075 PF00535 Glycosyl transferase family 2 THIMO_RS00080 PF00534 Glycosyl transferases group 1 THIMO_RS00080 PF13579 Glycosyl transferase 4-like domain THIMO_RS00120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THIMO_RS00150 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS00155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THIMO_RS00155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THIMO_RS00165 PF01850 PIN domain THIMO_RS00175 PF00950 ABC 3 transport family THIMO_RS00180 PF00005 ABC transporter THIMO_RS00185 PF01297 Zinc-uptake complex component A periplasmic THIMO_RS00190 PF07475 HPr Serine kinase C-terminal domain THIMO_RS00190 PF02603 HPr Serine kinase N terminus THIMO_RS00195 PF00437 Type II/IV secretion system protein THIMO_RS00195 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THIMO_RS00200 PF00482 Type II secretion system (T2SS), protein F THIMO_RS00205 PF08334 Type II secretion system (T2SS), protein G THIMO_RS00205 PF07963 Prokaryotic N-terminal methylation motif THIMO_RS00210 PF12019 Type II transport protein GspH THIMO_RS00215 PF07963 Prokaryotic N-terminal methylation motif THIMO_RS00225 PF03934 Type II secretion system (T2SS), protein K THIMO_RS00230 PF05137 Fimbrial assembly protein (PilN) THIMO_RS00245 PF00263 Bacterial type II and III secretion system protein THIMO_RS00245 PF03958 Bacterial type II/III secretion system short domain THIMO_RS00250 PF03109 ABC1 family THIMO_RS00255 PF02036 SCP-2 sterol transfer family THIMO_RS00260 PF01209 ubiE/COQ5 methyltransferase family THIMO_RS00265 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS00265 PF05362 Lon protease (S16) C-terminal proteolytic domain THIMO_RS00265 PF02190 ATP-dependent protease La (LON) substrate-binding domain THIMO_RS00275 PF00795 Carbon-nitrogen hydrolase THIMO_RS00290 PF08245 Mur ligase middle domain THIMO_RS00290 PF01225 Mur ligase family, catalytic domain THIMO_RS00290 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS00295 PF02441 Flavoprotein THIMO_RS00300 PF00182 Chitinase class I THIMO_RS00320 PF09335 SNARE associated Golgi protein THIMO_RS00325 PF00202 Aminotransferase class-III THIMO_RS00330 PF02581 Thiamine monophosphate synthase THIMO_RS00335 PF02581 Thiamine monophosphate synthase THIMO_RS00335 PF08543 Phosphomethylpyrimidine kinase THIMO_RS00340 PF00301 Rubredoxin THIMO_RS00350 PF01521 Iron-sulphur cluster biosynthesis THIMO_RS00355 PF02774 Semialdehyde dehydrogenase, dimerisation domain THIMO_RS00355 PF01118 Semialdehyde dehydrogenase, NAD binding domain THIMO_RS00360 PF13361 UvrD-like helicase C-terminal domain THIMO_RS00360 PF00580 UvrD/REP helicase N-terminal domain THIMO_RS00365 PF03480 Bacterial extracellular solute-binding protein, family 7 THIMO_RS00370 PF06969 HemN C-terminal domain THIMO_RS00370 PF04055 Radical SAM superfamily THIMO_RS00375 PF01197 Ribosomal protein L31 THIMO_RS00380 PF00285 Citrate synthase, C-terminal domain THIMO_RS00390 PF11104 Type IV pilus assembly protein PilM; THIMO_RS00395 PF05137 Fimbrial assembly protein (PilN) THIMO_RS00400 PF04350 Pilus assembly protein, PilO THIMO_RS00410 PF11741 AMIN domain THIMO_RS00410 PF07660 Secretin and TonB N terminus short domain THIMO_RS00410 PF00263 Bacterial type II and III secretion system protein THIMO_RS00410 PF03958 Bacterial type II/III secretion system short domain THIMO_RS00415 PF01202 Shikimate kinase THIMO_RS00420 PF01761 3-dehydroquinate synthase THIMO_RS00425 PF01493 GXGXG motif THIMO_RS00425 PF01645 Conserved region in glutamate synthase THIMO_RS00425 PF04898 Glutamate synthase central domain THIMO_RS00425 PF00310 Glutamine amidotransferases class-II THIMO_RS00430 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THIMO_RS00430 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS00435 PF00578 AhpC/TSA family THIMO_RS00440 PF00072 Response regulator receiver domain THIMO_RS00440 PF09308 LuxQ, periplasmic THIMO_RS00440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS00440 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS00445 PF00072 Response regulator receiver domain THIMO_RS00455 PF17284 Spermidine synthase tetramerisation domain THIMO_RS00460 PF00909 Ammonium Transporter Family THIMO_RS00465 PF00543 Nitrogen regulatory protein P-II THIMO_RS00480 PF01078 Magnesium chelatase, subunit ChlI THIMO_RS00480 PF13335 Magnesium chelatase, subunit ChlI C-terminal THIMO_RS00485 PF00005 ABC transporter THIMO_RS00485 PF12848 ABC transporter THIMO_RS00490 PF00343 Carbohydrate phosphorylase THIMO_RS00500 PF17820 PDZ domain THIMO_RS00500 PF02163 Peptidase family M50 THIMO_RS00505 PF02237 Biotin protein ligase C terminal domain THIMO_RS00505 PF03099 Biotin/lipoate A/B protein ligase family THIMO_RS00510 PF00563 EAL domain THIMO_RS00510 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS00510 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS00525 PF01435 Peptidase family M48 THIMO_RS00525 PF13181 Tetratricopeptide repeat THIMO_RS00540 PF02082 Transcriptional regulator THIMO_RS00555 PF01594 AI-2E family transporter THIMO_RS00565 PF05685 Putative restriction endonuclease THIMO_RS00570 PF05378 Hydantoinase/oxoprolinase N-terminal region THIMO_RS00570 PF01968 Hydantoinase/oxoprolinase THIMO_RS00575 PF00793 DAHP synthetase I family THIMO_RS00580 PF00210 Ferritin-like domain THIMO_RS00585 PF00994 Probable molybdopterin binding domain THIMO_RS00585 PF18146 Damage-inducible protein CinA KH domain THIMO_RS00585 PF02464 Competence-damaged protein THIMO_RS00590 PF00255 Glutathione peroxidase THIMO_RS00595 PF00970 Oxidoreductase FAD-binding domain THIMO_RS00595 PF00175 Oxidoreductase NAD-binding domain THIMO_RS00605 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase THIMO_RS00610 PF00535 Glycosyl transferase family 2 THIMO_RS00615 PF00011 Hsp20/alpha crystallin family THIMO_RS00620 PF00595 PDZ domain THIMO_RS00620 PF13180 PDZ domain THIMO_RS00630 PF05494 MlaC protein THIMO_RS00640 PF00490 Delta-aminolevulinic acid dehydratase THIMO_RS00645 PF01488 Shikimate / quinate 5-dehydrogenase THIMO_RS00645 PF08501 Shikimate dehydrogenase substrate binding domain THIMO_RS00645 PF18317 Shikimate 5'-dehydrogenase C-terminal domain THIMO_RS00650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THIMO_RS00650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase THIMO_RS00690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THIMO_RS00690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THIMO_RS00695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THIMO_RS00695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THIMO_RS00700 PF02635 DsrE/DsrF-like family THIMO_RS00705 PF02635 DsrE/DsrF-like family THIMO_RS00715 PF04358 DsrC like protein THIMO_RS00730 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS00730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THIMO_RS00740 PF13247 4Fe-4S dicluster domain THIMO_RS00750 PF07685 CobB/CobQ-like glutamine amidotransferase domain THIMO_RS00750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS00760 PF01593 Flavin containing amine oxidoreductase THIMO_RS00765 PF00106 short chain dehydrogenase THIMO_RS00775 PF00753 Metallo-beta-lactamase superfamily THIMO_RS00800 PF07728 AAA domain (dynein-related subfamily) THIMO_RS00800 PF08406 CbbQ/NirQ/NorQ C-terminal THIMO_RS00810 PF00092 von Willebrand factor type A domain THIMO_RS00820 PF03193 RsgA GTPase THIMO_RS00830 PF13344 Haloacid dehalogenase-like hydrolase THIMO_RS00840 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS00840 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS00840 PF00563 EAL domain THIMO_RS00845 PF00118 TCP-1/cpn60 chaperonin family THIMO_RS00850 PF00166 Chaperonin 10 Kd subunit THIMO_RS00860 PF03091 CutA1 divalent ion tolerance protein THIMO_RS00865 PF11412 Disulphide bond corrector protein DsbC THIMO_RS00865 PF02683 Cytochrome C biogenesis protein transmembrane region THIMO_RS00875 PF01220 Dehydroquinase class II THIMO_RS00880 PF00364 Biotin-requiring enzyme THIMO_RS00885 PF02785 Biotin carboxylase C-terminal domain THIMO_RS00885 PF00289 Biotin carboxylase, N-terminal domain THIMO_RS00885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THIMO_RS00895 PF01207 Dihydrouridine synthase (Dus) THIMO_RS00900 PF02954 Bacterial regulatory protein, Fis family THIMO_RS00905 PF02142 MGS-like domain THIMO_RS00905 PF01808 AICARFT/IMPCHase bienzyme THIMO_RS00910 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THIMO_RS00910 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS00915 PF02844 Phosphoribosylglycinamide synthetase, N domain THIMO_RS00915 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THIMO_RS00915 PF02843 Phosphoribosylglycinamide synthetase, C domain THIMO_RS00920 PF08496 Peptidase family S49 N-terminal THIMO_RS00920 PF01343 Peptidase family S49 THIMO_RS00925 PF00753 Metallo-beta-lactamase superfamily THIMO_RS00925 PF03772 Competence protein THIMO_RS00935 PF00005 ABC transporter THIMO_RS00940 PF12704 MacB-like periplasmic core domain THIMO_RS00940 PF02687 FtsX-like permease family THIMO_RS00945 PF04371 Porphyromonas-type peptidyl-arginine deiminase THIMO_RS00955 PF00375 Sodium:dicarboxylate symporter family THIMO_RS00965 PF01381 Helix-turn-helix THIMO_RS01000 PF04608 Phosphatidylglycerophosphatase A THIMO_RS01005 PF00586 AIR synthase related protein, N-terminal domain THIMO_RS01005 PF02769 AIR synthase related protein, C-terminal domain THIMO_RS01010 PF01029 NusB family THIMO_RS01015 PF00885 6,7-dimethyl-8-ribityllumazine synthase THIMO_RS01020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THIMO_RS01020 PF00925 GTP cyclohydrolase II THIMO_RS01025 PF00677 Lumazine binding domain THIMO_RS01050 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS01050 PF00072 Response regulator receiver domain THIMO_RS01055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS01055 PF08521 Two-component sensor kinase N-terminal THIMO_RS01055 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS01070 PF03063 Prismane/CO dehydrogenase family THIMO_RS01080 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS01085 PF00005 ABC transporter THIMO_RS01100 PF04060 Putative Fe-S cluster THIMO_RS01100 PF13187 4Fe-4S dicluster domain THIMO_RS01105 PF02508 Rnf-Nqr subunit, membrane protein THIMO_RS01110 PF02508 Rnf-Nqr subunit, membrane protein THIMO_RS01115 PF04205 FMN-binding domain THIMO_RS01120 PF03116 NQR2, RnfD, RnfE family THIMO_RS01125 PF13375 RnfC Barrel sandwich hybrid domain THIMO_RS01125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIMO_RS01125 PF10531 SLBB domain THIMO_RS01125 PF13237 4Fe-4S dicluster domain THIMO_RS01130 PF02629 CoA binding domain THIMO_RS01130 PF00549 CoA-ligase THIMO_RS01135 PF08442 ATP-grasp domain THIMO_RS01135 PF00549 CoA-ligase THIMO_RS01140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain THIMO_RS01140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch THIMO_RS01140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain THIMO_RS01145 PF02233 NAD(P) transhydrogenase beta subunit THIMO_RS01150 PF00056 lactate/malate dehydrogenase, NAD binding domain THIMO_RS01150 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THIMO_RS01160 PF00549 CoA-ligase THIMO_RS01160 PF08442 ATP-grasp domain THIMO_RS01165 PF02629 CoA binding domain THIMO_RS01165 PF00549 CoA-ligase THIMO_RS01170 PF00330 Aconitase family (aconitate hydratase) THIMO_RS01175 PF03971 Monomeric isocitrate dehydrogenase THIMO_RS01185 PF02910 Fumarate reductase flavoprotein C-term THIMO_RS01185 PF00890 FAD binding domain THIMO_RS01205 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THIMO_RS01205 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THIMO_RS01205 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THIMO_RS01210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIMO_RS01220 PF01593 Flavin containing amine oxidoreductase THIMO_RS01240 PF00175 Oxidoreductase NAD-binding domain THIMO_RS01240 PF00970 Oxidoreductase FAD-binding domain THIMO_RS01240 PF00111 2Fe-2S iron-sulfur cluster binding domain THIMO_RS01255 PF02561 Flagellar protein FliS THIMO_RS01265 PF00669 Bacterial flagellin N-terminal helical region THIMO_RS01265 PF00700 Bacterial flagellin C-terminal helical region THIMO_RS01275 PF07196 Flagellin hook IN motif THIMO_RS01275 PF07195 Flagellar hook-associated protein 2 C-terminus THIMO_RS01275 PF02465 Flagellar hook-associated protein 2 N-terminus THIMO_RS01280 PF02954 Bacterial regulatory protein, Fis family THIMO_RS01280 PF00158 Sigma-54 interaction domain THIMO_RS01280 PF06490 Flagellar regulatory protein FleQ THIMO_RS01285 PF02954 Bacterial regulatory protein, Fis family THIMO_RS01285 PF00158 Sigma-54 interaction domain THIMO_RS01285 PF00072 Response regulator receiver domain THIMO_RS01290 PF02049 Flagellar hook-basal body complex protein FliE THIMO_RS01295 PF01514 Secretory protein of YscJ/FliF family THIMO_RS01295 PF08345 Flagellar M-ring protein C-terminal THIMO_RS01300 PF14842 FliG N-terminal domain THIMO_RS01300 PF14841 FliG middle domain THIMO_RS01300 PF01706 FliG C-terminal domain THIMO_RS01310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS01310 PF18269 T3SS EscN ATPase C-terminal domain THIMO_RS01330 PF02154 Flagellar motor switch protein FliM THIMO_RS01330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THIMO_RS01335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THIMO_RS01345 PF00813 FliP family THIMO_RS01350 PF01313 Bacterial export proteins, family 3 THIMO_RS01355 PF01311 Bacterial export proteins, family 1 THIMO_RS01360 PF01312 FlhB HrpN YscU SpaS Family THIMO_RS01365 PF00771 FHIPEP family THIMO_RS01370 PF00448 SRP54-type protein, GTPase domain THIMO_RS01375 PF10609 NUBPL iron-transfer P-loop NTPase THIMO_RS01380 PF04545 Sigma-70, region 4 THIMO_RS01380 PF04539 Sigma-70 region 3 THIMO_RS01380 PF04542 Sigma-70 region 2 THIMO_RS01410 PF00691 OmpA family THIMO_RS01410 PF13677 Membrane MotB of proton-channel complex MotA/MotB THIMO_RS01415 PF01618 MotA/TolQ/ExbB proton channel family THIMO_RS01425 PF03449 Transcription elongation factor, N-terminal THIMO_RS01425 PF01272 Transcription elongation factor, GreA/GreB, C-term THIMO_RS01430 PF02142 MGS-like domain THIMO_RS01430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THIMO_RS01430 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THIMO_RS01435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THIMO_RS01435 PF00117 Glutamine amidotransferase class-I THIMO_RS01445 PF12704 MacB-like periplasmic core domain THIMO_RS01445 PF02687 FtsX-like permease family THIMO_RS01450 PF00005 ABC transporter THIMO_RS01450 PF12704 MacB-like periplasmic core domain THIMO_RS01450 PF02687 FtsX-like permease family THIMO_RS01465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THIMO_RS01465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THIMO_RS01570 PF09827 CRISPR associated protein Cas2 THIMO_RS01585 PF01797 Transposase IS200 like THIMO_RS01590 PF09190 DALR domain THIMO_RS01590 PF01406 tRNA synthetases class I (C) catalytic domain THIMO_RS01595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THIMO_RS01600 PF00149 Calcineurin-like phosphoesterase THIMO_RS01605 PF00535 Glycosyl transferase family 2 THIMO_RS01605 PF00795 Carbon-nitrogen hydrolase THIMO_RS01615 PF00271 Helicase conserved C-terminal domain THIMO_RS01615 PF00270 DEAD/DEAH box helicase THIMO_RS01640 PF17674 HHH domain THIMO_RS01640 PF00575 S1 RNA binding domain THIMO_RS01640 PF09371 Tex-like protein N-terminal domain THIMO_RS01640 PF16921 Tex protein YqgF-like domain THIMO_RS01655 PF00464 Serine hydroxymethyltransferase THIMO_RS01660 PF03477 ATP cone domain THIMO_RS01665 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THIMO_RS01665 PF01872 RibD C-terminal domain THIMO_RS01675 PF00781 Diacylglycerol kinase catalytic domain THIMO_RS01680 PF00149 Calcineurin-like phosphoesterase THIMO_RS01705 PF04055 Radical SAM superfamily THIMO_RS01705 PF06463 Molybdenum Cofactor Synthesis C THIMO_RS01710 PF03109 ABC1 family THIMO_RS01715 PF01654 Cytochrome bd terminal oxidase subunit I THIMO_RS01720 PF02322 Cytochrome bd terminal oxidase subunit II THIMO_RS01730 PF00664 ABC transporter transmembrane region THIMO_RS01730 PF00005 ABC transporter THIMO_RS01735 PF00005 ABC transporter THIMO_RS01735 PF00664 ABC transporter transmembrane region THIMO_RS01780 PF08443 RimK-like ATP-grasp domain THIMO_RS01780 PF18030 RimK PreATP-grasp domain THIMO_RS01790 PF07730 Histidine kinase THIMO_RS01790 PF05231 MASE1 THIMO_RS01790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS01800 PF07883 Cupin domain THIMO_RS01805 PF01590 GAF domain THIMO_RS01805 PF00158 Sigma-54 interaction domain THIMO_RS01820 PF01641 SelR domain THIMO_RS01830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIMO_RS01830 PF00205 Thiamine pyrophosphate enzyme, central domain THIMO_RS01830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THIMO_RS01835 PF10369 Small subunit of acetolactate synthase THIMO_RS01840 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain THIMO_RS01840 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THIMO_RS01845 PF03734 L,D-transpeptidase catalytic domain THIMO_RS01860 PF01116 Fructose-bisphosphate aldolase class-II THIMO_RS01865 PF13419 Haloacid dehalogenase-like hydrolase THIMO_RS01885 PF05016 ParE toxin of type II toxin-antitoxin system, parDE THIMO_RS01900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family THIMO_RS01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS01910 PF03466 LysR substrate binding domain THIMO_RS01915 PF07704 Rv0623-like transcription factor THIMO_RS01920 PF01850 PIN domain THIMO_RS01940 PF03279 Bacterial lipid A biosynthesis acyltransferase THIMO_RS01945 PF04357 TamB, inner membrane protein subunit of TAM complex THIMO_RS01950 PF01103 Surface antigen THIMO_RS01950 PF07244 Surface antigen variable number repeat THIMO_RS01955 PF00403 Heavy-metal-associated domain THIMO_RS01960 PF02685 Glucokinase THIMO_RS01970 PF04358 DsrC like protein THIMO_RS01975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THIMO_RS01980 PF12804 MobA-like NTP transferase domain THIMO_RS01995 PF07669 Eco57I restriction-modification methylase THIMO_RS02000 PF02082 Transcriptional regulator THIMO_RS02005 PF05175 Methyltransferase small domain THIMO_RS02015 PF04055 Radical SAM superfamily THIMO_RS02015 PF06969 HemN C-terminal domain THIMO_RS02020 PF13193 AMP-binding enzyme C-terminal domain THIMO_RS02020 PF00501 AMP-binding enzyme THIMO_RS02025 PF05698 Bacterial trigger factor protein (TF) C-terminus THIMO_RS02025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIMO_RS02025 PF05697 Bacterial trigger factor protein (TF) THIMO_RS02030 PF00574 Clp protease THIMO_RS02035 PF07724 AAA domain (Cdc48 subfamily) THIMO_RS02035 PF06689 ClpX C4-type zinc finger THIMO_RS02035 PF10431 C-terminal, D2-small domain, of ClpB protein THIMO_RS02040 PF02190 ATP-dependent protease La (LON) substrate-binding domain THIMO_RS02040 PF05362 Lon protease (S16) C-terminal proteolytic domain THIMO_RS02040 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS02045 PF00216 Bacterial DNA-binding protein THIMO_RS02060 PF09312 SurA N-terminal domain THIMO_RS02070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain THIMO_RS02070 PF02770 Acyl-CoA dehydrogenase, middle domain THIMO_RS02070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain THIMO_RS02075 PF01012 Electron transfer flavoprotein domain THIMO_RS02075 PF00766 Electron transfer flavoprotein FAD-binding domain THIMO_RS02080 PF01012 Electron transfer flavoprotein domain THIMO_RS02090 PF06167 Glucose-regulated metallo-peptidase M90 THIMO_RS02095 PF02630 SCO1/SenC THIMO_RS02105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THIMO_RS02120 PF06532 Negative regulator of sigma F THIMO_RS02125 PF08281 Sigma-70, region 4 THIMO_RS02125 PF04542 Sigma-70 region 2 THIMO_RS02135 PF01625 Peptide methionine sulfoxide reductase THIMO_RS02145 PF00521 DNA gyrase/topoisomerase IV, subunit A THIMO_RS02145 PF03989 DNA gyrase C-terminal domain, beta-propeller THIMO_RS02150 PF01894 Uncharacterised protein family UPF0047 THIMO_RS02160 PF17768 RecJ OB domain THIMO_RS02160 PF02272 DHHA1 domain THIMO_RS02160 PF01368 DHH family THIMO_RS02170 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) THIMO_RS02170 PF01348 Type II intron maturase THIMO_RS02175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THIMO_RS02185 PF05685 Putative restriction endonuclease THIMO_RS02190 PF04751 Protein of unknown function (DUF615) THIMO_RS02200 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit THIMO_RS02205 PF02910 Fumarate reductase flavoprotein C-term THIMO_RS02205 PF00890 FAD binding domain THIMO_RS02210 PF13085 2Fe-2S iron-sulfur cluster binding domain THIMO_RS02220 PF13411 MerR HTH family regulatory protein THIMO_RS02220 PF07739 TipAS antibiotic-recognition domain THIMO_RS02235 PF00890 FAD binding domain THIMO_RS02235 PF04205 FMN-binding domain THIMO_RS02240 PF07685 CobB/CobQ-like glutamine amidotransferase domain THIMO_RS02265 PF01596 O-methyltransferase THIMO_RS02275 PF00248 Aldo/keto reductase family THIMO_RS02285 PF07685 CobB/CobQ-like glutamine amidotransferase domain THIMO_RS02305 PF13533 Biotin-lipoyl like THIMO_RS02310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily THIMO_RS02320 PF02535 ZIP Zinc transporter THIMO_RS02325 PF02310 B12 binding domain THIMO_RS02325 PF04055 Radical SAM superfamily THIMO_RS02335 PF02310 B12 binding domain THIMO_RS02335 PF02574 Homocysteine S-methyltransferase THIMO_RS02335 PF00809 Pterin binding enzyme THIMO_RS02335 PF02965 Vitamin B12 dependent methionine synthase, activation domain THIMO_RS02335 PF02607 B12 binding domain THIMO_RS02355 PF05685 Putative restriction endonuclease THIMO_RS02360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS02360 PF07685 CobB/CobQ-like glutamine amidotransferase domain THIMO_RS02365 PF03186 CobD/Cbib protein THIMO_RS02365 PF17113 Regulatory signalling modulator protein AmpE THIMO_RS02370 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase THIMO_RS02375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS02410 PF00072 Response regulator receiver domain THIMO_RS02415 PF01636 Phosphotransferase enzyme family THIMO_RS02425 PF02881 SRP54-type protein, helical bundle domain THIMO_RS02425 PF02978 Signal peptide binding domain THIMO_RS02425 PF00448 SRP54-type protein, GTPase domain THIMO_RS02435 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS02435 PF01590 GAF domain THIMO_RS02435 PF00563 EAL domain THIMO_RS02435 PF00989 PAS fold THIMO_RS02440 PF01467 Cytidylyltransferase-like THIMO_RS02440 PF00294 pfkB family carbohydrate kinase THIMO_RS02445 PF13580 SIS domain THIMO_RS02500 PF01451 Low molecular weight phosphotyrosine protein phosphatase THIMO_RS02505 PF12111 Polyribonucleotide phosphorylase C terminal THIMO_RS02505 PF00575 S1 RNA binding domain THIMO_RS02505 PF10150 Ribonuclease E/G family THIMO_RS02510 PF00849 RNA pseudouridylate synthase THIMO_RS02510 PF01479 S4 domain THIMO_RS02515 PF13419 Haloacid dehalogenase-like hydrolase THIMO_RS02520 PF01343 Peptidase family S49 THIMO_RS02525 PF01464 Transglycosylase SLT domain THIMO_RS02525 PF01476 LysM domain THIMO_RS02530 PF02545 Maf-like protein THIMO_RS02545 PF00873 AcrB/AcrD/AcrF family THIMO_RS02550 PF00072 Response regulator receiver domain THIMO_RS02550 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS02550 PF01627 Hpt domain THIMO_RS02550 PF00672 HAMP domain THIMO_RS02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS02550 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIMO_RS02560 PF14403 Circularly permuted ATP-grasp type 2 THIMO_RS02570 PF01258 Prokaryotic dksA/traR C4-type zinc finger THIMO_RS02575 PF04358 DsrC like protein THIMO_RS02610 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIMO_RS02610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS02630 PF04546 Sigma-70, non-essential region THIMO_RS02630 PF03979 Sigma-70 factor, region 1.1 THIMO_RS02630 PF04542 Sigma-70 region 2 THIMO_RS02630 PF04539 Sigma-70 region 3 THIMO_RS02630 PF04545 Sigma-70, region 4 THIMO_RS02630 PF00140 Sigma-70 factor, region 1.2 THIMO_RS02635 PF08275 DNA primase catalytic core, N-terminal domain THIMO_RS02635 PF10410 DnaB-helicase binding domain of primase THIMO_RS02635 PF01807 CHC2 zinc finger THIMO_RS02635 PF08278 DNA primase DnaG DnaB-binding THIMO_RS02645 PF01165 Ribosomal protein S21 THIMO_RS02655 PF00814 Glycoprotease family THIMO_RS02660 PF02660 Glycerol-3-phosphate acyltransferase THIMO_RS02665 PF02152 Dihydroneopterin aldolase THIMO_RS02670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THIMO_RS02680 PF00106 short chain dehydrogenase THIMO_RS02705 PF01925 Sulfite exporter TauE/SafE THIMO_RS02710 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS02715 PF03061 Thioesterase superfamily THIMO_RS02720 PF01618 MotA/TolQ/ExbB proton channel family THIMO_RS02725 PF02472 Biopolymer transport protein ExbD/TolR THIMO_RS02735 PF04052 TolB amino-terminal domain THIMO_RS02735 PF07676 WD40-like Beta Propeller Repeat THIMO_RS02740 PF00691 OmpA family THIMO_RS02750 PF04055 Radical SAM superfamily THIMO_RS02770 PF01668 SmpB protein THIMO_RS02775 PF00121 Triosephosphate isomerase THIMO_RS02780 PF03840 Preprotein translocase SecG subunit THIMO_RS02790 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THIMO_RS02795 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS02800 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THIMO_RS02805 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THIMO_RS02815 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THIMO_RS02815 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIMO_RS02815 PF10531 SLBB domain THIMO_RS02820 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THIMO_RS02820 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THIMO_RS02820 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THIMO_RS02820 PF00384 Molybdopterin oxidoreductase THIMO_RS02820 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THIMO_RS02820 PF00384 Molybdopterin oxidoreductase THIMO_RS02825 PF00146 NADH dehydrogenase THIMO_RS02830 PF12838 4Fe-4S dicluster domain THIMO_RS02835 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THIMO_RS02840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THIMO_RS02845 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THIMO_RS02845 PF00361 Proton-conducting membrane transporter THIMO_RS02850 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus THIMO_RS02850 PF00361 Proton-conducting membrane transporter THIMO_RS02855 PF00361 Proton-conducting membrane transporter THIMO_RS02880 PF03969 AFG1-like ATPase THIMO_RS02885 PF12833 Helix-turn-helix domain THIMO_RS02885 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term THIMO_RS02920 PF00069 Protein kinase domain THIMO_RS02930 PF13742 OB-fold nucleic acid binding domain THIMO_RS02930 PF02601 Exonuclease VII, large subunit THIMO_RS02935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS02935 PF03459 TOBE domain THIMO_RS02945 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS02950 PF03459 TOBE domain THIMO_RS02950 PF00005 ABC transporter THIMO_RS02955 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THIMO_RS02955 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THIMO_RS02960 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THIMO_RS02960 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THIMO_RS02985 PF00360 Phytochrome region THIMO_RS02985 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS02985 PF01590 GAF domain THIMO_RS02985 PF00563 EAL domain THIMO_RS02990 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS02990 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIMO_RS02990 PF01627 Hpt domain THIMO_RS02990 PF00072 Response regulator receiver domain THIMO_RS02990 PF00672 HAMP domain THIMO_RS02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS02995 PF08448 PAS fold THIMO_RS02995 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS03025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component THIMO_RS03045 PF02687 FtsX-like permease family THIMO_RS03045 PF12704 MacB-like periplasmic core domain THIMO_RS03050 PF02687 FtsX-like permease family THIMO_RS03050 PF00005 ABC transporter THIMO_RS03050 PF12704 MacB-like periplasmic core domain THIMO_RS03055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS03110 PF00437 Type II/IV secretion system protein THIMO_RS03115 PF00437 Type II/IV secretion system protein THIMO_RS03120 PF00482 Type II secretion system (T2SS), protein F THIMO_RS03130 PF03958 Bacterial type II/III secretion system short domain THIMO_RS03130 PF00263 Bacterial type II and III secretion system protein THIMO_RS03135 PF01464 Transglycosylase SLT domain THIMO_RS03150 PF03239 Iron permease FTR1 family THIMO_RS03155 PF01841 Transglutaminase-like superfamily THIMO_RS03155 PF11992 Domain of unknown function (DUF3488) THIMO_RS03155 PF13559 Domain of unknown function (DUF4129) THIMO_RS03165 PF17863 AAA lid domain THIMO_RS03165 PF07726 ATPase family associated with various cellular activities (AAA) THIMO_RS03185 PF00072 Response regulator receiver domain THIMO_RS03185 PF01627 Hpt domain THIMO_RS03185 PF00672 HAMP domain THIMO_RS03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS03185 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS03185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIMO_RS03190 PF00485 Phosphoribulokinase / Uridine kinase family THIMO_RS03195 PF03471 Transporter associated domain THIMO_RS03195 PF00571 CBS domain THIMO_RS03200 PF02130 Uncharacterized protein family UPF0054 THIMO_RS03205 PF02562 PhoH-like protein THIMO_RS03210 PF01938 TRAM domain THIMO_RS03210 PF00919 Uncharacterized protein family UPF0004 THIMO_RS03210 PF04055 Radical SAM superfamily THIMO_RS03220 PF00117 Glutamine amidotransferase class-I THIMO_RS03225 PF01751 Toprim domain THIMO_RS03225 PF18053 DNA gyrase B subunit insert domain THIMO_RS03225 PF00986 DNA gyrase B subunit, carboxyl terminus THIMO_RS03225 PF00204 DNA gyrase B THIMO_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS03230 PF05872 Bacterial protein of unknown function (DUF853) THIMO_RS03240 PF00271 Helicase conserved C-terminal domain THIMO_RS03240 PF09369 Domain of unknown function (DUF1998) THIMO_RS03240 PF00270 DEAD/DEAH box helicase THIMO_RS03255 PF16870 2-oxoglutarate dehydrogenase C-terminal THIMO_RS03255 PF16078 2-oxoglutarate dehydrogenase N-terminus THIMO_RS03255 PF00676 Dehydrogenase E1 component THIMO_RS03255 PF02779 Transketolase, pyrimidine binding domain THIMO_RS03260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THIMO_RS03260 PF00364 Biotin-requiring enzyme THIMO_RS03260 PF02817 e3 binding domain THIMO_RS03275 PF02541 Ppx/GppA phosphatase family THIMO_RS03295 PF00437 Type II/IV secretion system protein THIMO_RS03300 PF00437 Type II/IV secretion system protein THIMO_RS03305 PF00731 AIR carboxylase THIMO_RS03310 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain THIMO_RS03310 PF02222 ATP-grasp domain THIMO_RS03330 PF00689 Cation transporting ATPase, C-terminus THIMO_RS03330 PF00690 Cation transporter/ATPase, N-terminus THIMO_RS03335 PF04168 A predicted alpha-helical domain with a conserved ER motif. THIMO_RS03335 PF14403 Circularly permuted ATP-grasp type 2 THIMO_RS03340 PF14403 Circularly permuted ATP-grasp type 2 THIMO_RS03350 PF17283 SprT-like zinc ribbon domain THIMO_RS03350 PF10263 SprT-like family THIMO_RS03355 PF02576 RimP N-terminal domain THIMO_RS03355 PF17384 RimP C-terminal SH3 domain THIMO_RS03360 PF00575 S1 RNA binding domain THIMO_RS03360 PF08529 NusA N-terminal domain THIMO_RS03360 PF13184 NusA-like KH domain THIMO_RS03365 PF11987 Translation-initiation factor 2 THIMO_RS03365 PF08364 Bacterial translation initiation factor IF-2 associated region THIMO_RS03365 PF04760 Translation initiation factor IF-2, N-terminal region THIMO_RS03365 PF00009 Elongation factor Tu GTP binding domain THIMO_RS03365 PF03144 Elongation factor Tu domain 2 THIMO_RS03370 PF02033 Ribosome-binding factor A THIMO_RS03375 PF01509 TruB family pseudouridylate synthase (N terminal domain) THIMO_RS03375 PF09157 Pseudouridine synthase II TruB, C-terminal THIMO_RS03375 PF16198 tRNA pseudouridylate synthase B C-terminal domain THIMO_RS03380 PF00312 Ribosomal protein S15 THIMO_RS03385 PF00575 S1 RNA binding domain THIMO_RS03385 PF00013 KH domain THIMO_RS03385 PF03725 3' exoribonuclease family, domain 2 THIMO_RS03385 PF01138 3' exoribonuclease family, domain 1 THIMO_RS03385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THIMO_RS03390 PF00924 Mechanosensitive ion channel THIMO_RS03390 PF12794 Mechanosensitive ion channel inner membrane domain 1 THIMO_RS03390 PF12795 Mechanosensitive ion channel porin domain THIMO_RS03395 PF01037 Lrp/AsnC ligand binding domain THIMO_RS03400 PF00682 HMGL-like THIMO_RS03400 PF08502 LeuA allosteric (dimerisation) domain THIMO_RS03405 PF00471 Ribosomal protein L33 THIMO_RS03410 PF00830 Ribosomal L28 family THIMO_RS03415 PF01170 Putative RNA methylase family UPF0020 THIMO_RS03415 PF10672 S-adenosylmethionine-dependent methyltransferase THIMO_RS03415 PF02926 THUMP domain THIMO_RS03420 PF00484 Carbonic anhydrase THIMO_RS03435 PF01909 Nucleotidyltransferase domain THIMO_RS03435 PF08335 GlnD PII-uridylyltransferase THIMO_RS03435 PF01842 ACT domain THIMO_RS03435 PF01966 HD domain THIMO_RS03440 PF00557 Metallopeptidase family M24 THIMO_RS03445 PF00318 Ribosomal protein S2 THIMO_RS03450 PF00889 Elongation factor TS THIMO_RS03455 PF00696 Amino acid kinase family THIMO_RS03460 PF01765 Ribosome recycling factor THIMO_RS03465 PF01255 Putative undecaprenyl diphosphate synthase THIMO_RS03475 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase THIMO_RS03475 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain THIMO_RS03475 PF13288 DXP reductoisomerase C-terminal domain THIMO_RS03480 PF17820 PDZ domain THIMO_RS03480 PF13180 PDZ domain THIMO_RS03480 PF02163 Peptidase family M50 THIMO_RS03485 PF07244 Surface antigen variable number repeat THIMO_RS03485 PF01103 Surface antigen THIMO_RS03495 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS03495 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD THIMO_RS03500 PF07977 FabA-like domain THIMO_RS03505 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS03505 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THIMO_RS03510 PF02684 Lipid-A-disaccharide synthetase THIMO_RS03515 PF01351 Ribonuclease HII THIMO_RS03520 PF04551 GcpE protein THIMO_RS03530 PF01894 Uncharacterised protein family UPF0047 THIMO_RS03535 PF03819 MazG nucleotide pyrophosphohydrolase domain THIMO_RS03540 PF04002 RadC-like JAB domain THIMO_RS03545 PF04127 DNA / pantothenate metabolism flavoprotein THIMO_RS03545 PF02441 Flavoprotein THIMO_RS03550 PF00692 dUTPase THIMO_RS03555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIMO_RS03555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIMO_RS03555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIMO_RS03555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIMO_RS03560 PF00696 Amino acid kinase family THIMO_RS03570 PF00156 Phosphoribosyl transferase domain THIMO_RS03585 PF02594 Uncharacterised ACR, YggU family COG1872 THIMO_RS03590 PF02325 YGGT family THIMO_RS03595 PF14748 Pyrroline-5-carboxylate reductase dimerisation THIMO_RS03595 PF03807 NADP oxidoreductase coenzyme F420-dependent THIMO_RS03600 PF01168 Alanine racemase, N-terminal domain THIMO_RS03605 PF01725 Ham1 family THIMO_RS03610 PF03725 3' exoribonuclease family, domain 2 THIMO_RS03610 PF01138 3' exoribonuclease family, domain 1 THIMO_RS03615 PF00069 Protein kinase domain THIMO_RS03620 PF03755 YicC-like family, N-terminal region THIMO_RS03620 PF08340 Domain of unknown function (DUF1732) THIMO_RS03625 PF00625 Guanylate kinase THIMO_RS03630 PF01192 RNA polymerase Rpb6 THIMO_RS03635 PF13291 ACT domain THIMO_RS03635 PF04607 Region found in RelA / SpoT proteins THIMO_RS03635 PF02824 TGS domain THIMO_RS03645 PF01042 Endoribonuclease L-PSP THIMO_RS03650 PF01259 SAICAR synthetase THIMO_RS03660 PF16123 Hydroxyacylglutathione hydrolase C-terminus THIMO_RS03660 PF00753 Metallo-beta-lactamase superfamily THIMO_RS03665 PF02780 Transketolase, C-terminal domain THIMO_RS03665 PF02779 Transketolase, pyrimidine binding domain THIMO_RS03665 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THIMO_RS03670 PF03466 LysR substrate binding domain THIMO_RS03670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS03675 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THIMO_RS03675 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THIMO_RS03680 PF00101 Ribulose bisphosphate carboxylase, small chain THIMO_RS03685 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS03685 PF00072 Response regulator receiver domain THIMO_RS03690 PF02779 Transketolase, pyrimidine binding domain THIMO_RS03690 PF02780 Transketolase, C-terminal domain THIMO_RS03715 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS03715 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THIMO_RS03730 PF00374 Nickel-dependent hydrogenase THIMO_RS03760 PF17758 Proteasomal ATPase OB N-terminal domain THIMO_RS03760 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS03760 PF16450 Proteasomal ATPase OB C-terminal domain THIMO_RS03935 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS03940 PF00072 Response regulator receiver domain THIMO_RS03940 PF00158 Sigma-54 interaction domain THIMO_RS03940 PF02954 Bacterial regulatory protein, Fis family THIMO_RS03965 PF04172 LrgB-like family THIMO_RS03995 PF00072 Response regulator receiver domain THIMO_RS03995 PF09308 LuxQ, periplasmic THIMO_RS03995 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS04005 PF01218 Coproporphyrinogen III oxidase THIMO_RS04030 PF10609 NUBPL iron-transfer P-loop NTPase THIMO_RS04030 PF01883 Iron-sulfur cluster assembly protein THIMO_RS04045 PF05191 Adenylate kinase, active site lid THIMO_RS04050 PF00085 Thioredoxin THIMO_RS04060 PF13977 BetI-type transcriptional repressor, C-terminal THIMO_RS04060 PF00440 Bacterial regulatory proteins, tetR family THIMO_RS04065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS04065 PF00529 HlyD membrane-fusion protein of T1SS THIMO_RS04070 PF00873 AcrB/AcrD/AcrF family THIMO_RS04075 PF05724 Thiopurine S-methyltransferase (TPMT) THIMO_RS04080 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS04080 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS04080 PF00563 EAL domain THIMO_RS04085 PF00563 EAL domain THIMO_RS04085 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS04085 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS04100 PF08019 Phosphoethanolamine transferase EptA/EptB THIMO_RS04100 PF00884 Sulfatase THIMO_RS04155 PF01740 STAS domain THIMO_RS04155 PF13426 PAS domain THIMO_RS04170 PF01680 SOR/SNZ family THIMO_RS04175 PF01174 SNO glutamine amidotransferase family THIMO_RS04185 PF12697 Alpha/beta hydrolase family THIMO_RS04190 PF10396 GTP-binding protein TrmE N-terminus THIMO_RS04190 PF12631 MnmE helical domain THIMO_RS04190 PF01926 50S ribosome-binding GTPase THIMO_RS04205 PF13193 AMP-binding enzyme C-terminal domain THIMO_RS04205 PF00501 AMP-binding enzyme THIMO_RS04210 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THIMO_RS04210 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THIMO_RS04215 PF01894 Uncharacterised protein family UPF0047 THIMO_RS04225 PF00293 NUDIX domain THIMO_RS04255 PF06122 Conjugative relaxosome accessory transposon protein THIMO_RS04290 PF00158 Sigma-54 interaction domain THIMO_RS04290 PF02954 Bacterial regulatory protein, Fis family THIMO_RS04290 PF13185 GAF domain THIMO_RS04355 PF02463 RecF/RecN/SMC N terminal domain THIMO_RS04355 PF06470 SMC proteins Flexible Hinge Domain THIMO_RS04360 PF04354 ZipA, C-terminal FtsZ-binding domain THIMO_RS04365 PF12826 Helix-hairpin-helix motif THIMO_RS04365 PF03120 NAD-dependent DNA ligase OB-fold domain THIMO_RS04365 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THIMO_RS04365 PF00533 BRCA1 C Terminus (BRCT) domain THIMO_RS04365 PF01653 NAD-dependent DNA ligase adenylation domain THIMO_RS04375 PF00194 Eukaryotic-type carbonic anhydrase THIMO_RS04380 PF00128 Alpha amylase, catalytic domain THIMO_RS04380 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THIMO_RS04385 PF01040 UbiA prenyltransferase family THIMO_RS04395 PF00291 Pyridoxal-phosphate dependent enzyme THIMO_RS04415 PF03466 LysR substrate binding domain THIMO_RS04415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS04420 PF00005 ABC transporter THIMO_RS04435 PF01891 Cobalt uptake substrate-specific transmembrane region THIMO_RS04450 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit THIMO_RS04455 PF01171 PP-loop family THIMO_RS04455 PF09179 TilS substrate binding domain THIMO_RS04455 PF11734 TilS substrate C-terminal domain THIMO_RS04485 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS04490 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS04495 PF08402 TOBE domain THIMO_RS04495 PF00005 ABC transporter THIMO_RS04500 PF13416 Bacterial extracellular solute-binding protein THIMO_RS04505 PF01773 Na+ dependent nucleoside transporter N-terminus THIMO_RS04505 PF07662 Na+ dependent nucleoside transporter C-terminus THIMO_RS04505 PF07670 Nucleoside recognition THIMO_RS04510 PF01430 Hsp33 protein THIMO_RS04515 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE THIMO_RS04545 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS04545 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS04545 PF00563 EAL domain THIMO_RS04550 PF07689 KaiB domain THIMO_RS04555 PF06745 KaiC THIMO_RS04560 PF00378 Enoyl-CoA hydratase/isomerase THIMO_RS04570 PF10609 NUBPL iron-transfer P-loop NTPase THIMO_RS04575 PF01588 Putative tRNA binding domain THIMO_RS04575 PF09334 tRNA synthetases class I (M) THIMO_RS04580 PF02508 Rnf-Nqr subunit, membrane protein THIMO_RS04585 PF04060 Putative Fe-S cluster THIMO_RS04590 PF12838 4Fe-4S dicluster domain THIMO_RS04590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIMO_RS04590 PF13375 RnfC Barrel sandwich hybrid domain THIMO_RS04590 PF10531 SLBB domain THIMO_RS04595 PF03116 NQR2, RnfD, RnfE family THIMO_RS04600 PF04205 FMN-binding domain THIMO_RS04605 PF02508 Rnf-Nqr subunit, membrane protein THIMO_RS04620 PF03795 YCII-related domain THIMO_RS04625 PF04279 Intracellular septation protein A THIMO_RS04630 PF02811 PHP domain THIMO_RS04635 PF01300 Telomere recombination THIMO_RS04640 PF02163 Peptidase family M50 THIMO_RS04645 PF00579 tRNA synthetases class I (W and Y) THIMO_RS04650 PF02616 Segregation and condensation protein ScpA THIMO_RS04655 PF04079 Segregation and condensation complex subunit ScpB THIMO_RS04660 PF00483 Nucleotidyl transferase THIMO_RS04660 PF01050 Mannose-6-phosphate isomerase THIMO_RS04665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIMO_RS04665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIMO_RS04665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIMO_RS04665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIMO_RS04720 PF00733 Asparagine synthase THIMO_RS04720 PF13537 Glutamine amidotransferase domain THIMO_RS04760 PF13537 Glutamine amidotransferase domain THIMO_RS04760 PF00733 Asparagine synthase THIMO_RS04770 PF13439 Glycosyltransferase Family 4 THIMO_RS04770 PF00534 Glycosyl transferases group 1 THIMO_RS04775 PF00535 Glycosyl transferase family 2 THIMO_RS04800 PF13333 Integrase core domain THIMO_RS04800 PF13276 HTH-like domain THIMO_RS04800 PF00665 Integrase core domain THIMO_RS04805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THIMO_RS04805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THIMO_RS04810 PF08241 Methyltransferase domain THIMO_RS04835 PF02350 UDP-N-acetylglucosamine 2-epimerase THIMO_RS04880 PF01527 Transposase THIMO_RS04885 PF13276 HTH-like domain THIMO_RS04885 PF13333 Integrase core domain THIMO_RS04885 PF00665 Integrase core domain THIMO_RS04895 PF10996 Beta-Casp domain THIMO_RS04895 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain THIMO_RS04895 PF00753 Metallo-beta-lactamase superfamily THIMO_RS04900 PF01521 Iron-sulphur cluster biosynthesis THIMO_RS04910 PF01479 S4 domain THIMO_RS04910 PF00579 tRNA synthetases class I (W and Y) THIMO_RS04945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIMO_RS04945 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS04950 PF00462 Glutaredoxin THIMO_RS04950 PF08534 Redoxin THIMO_RS04955 PF13406 Transglycosylase SLT domain THIMO_RS04960 PF00270 DEAD/DEAH box helicase THIMO_RS04960 PF17191 RecG wedge domain THIMO_RS04960 PF00271 Helicase conserved C-terminal domain THIMO_RS04965 PF01040 UbiA prenyltransferase family THIMO_RS04975 PF01121 Dephospho-CoA kinase THIMO_RS04980 PF01478 Type IV leader peptidase family THIMO_RS04980 PF06750 Bacterial Peptidase A24 N-terminal domain THIMO_RS04985 PF00482 Type II secretion system (T2SS), protein F THIMO_RS04990 PF00437 Type II/IV secretion system protein THIMO_RS04990 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THIMO_RS05000 PF00501 AMP-binding enzyme THIMO_RS05000 PF13193 AMP-binding enzyme C-terminal domain THIMO_RS05000 PF16177 Acetyl-coenzyme A synthetase N-terminus THIMO_RS05005 PF03190 Protein of unknown function, DUF255 THIMO_RS05010 PF01274 Malate synthase THIMO_RS05025 PF02547 Queuosine biosynthesis protein THIMO_RS05030 PF01625 Peptide methionine sulfoxide reductase THIMO_RS05040 PF01702 Queuine tRNA-ribosyltransferase THIMO_RS05045 PF02699 Preprotein translocase subunit THIMO_RS05050 PF07549 SecD/SecF GG Motif THIMO_RS05050 PF13721 SecD export protein N-terminal TM region THIMO_RS05050 PF02355 Protein export membrane protein THIMO_RS05055 PF07549 SecD/SecF GG Motif THIMO_RS05055 PF02355 Protein export membrane protein THIMO_RS05060 PF00459 Inositol monophosphatase family THIMO_RS05065 PF00588 SpoU rRNA Methylase family THIMO_RS05070 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS05080 PF04452 RNA methyltransferase THIMO_RS05085 PF04241 Protein of unknown function (DUF423) THIMO_RS05095 PF00206 Lyase THIMO_RS05095 PF14698 Argininosuccinate lyase C-terminal THIMO_RS05115 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family THIMO_RS05120 PF13180 PDZ domain THIMO_RS05120 PF00595 PDZ domain THIMO_RS05125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIMO_RS05130 PF00186 Dihydrofolate reductase THIMO_RS05140 PF01467 Cytidylyltransferase-like THIMO_RS05145 PF00171 Aldehyde dehydrogenase family THIMO_RS05155 PF04390 Lipopolysaccharide-assembly THIMO_RS05160 PF13603 Leucyl-tRNA synthetase, Domain 2 THIMO_RS05160 PF00133 tRNA synthetases class I (I, L, M and V) THIMO_RS05160 PF08264 Anticodon-binding domain of tRNA THIMO_RS05165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIMO_RS05165 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS05170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THIMO_RS05170 PF00364 Biotin-requiring enzyme THIMO_RS05170 PF02817 e3 binding domain THIMO_RS05175 PF00456 Transketolase, thiamine diphosphate binding domain THIMO_RS05175 PF17831 Pyruvate dehydrogenase E1 component middle domain THIMO_RS05220 PF04430 Protein of unknown function (DUF498/DUF598) THIMO_RS05225 PF00155 Aminotransferase class I and II THIMO_RS05230 PF00742 Homoserine dehydrogenase THIMO_RS05230 PF03447 Homoserine dehydrogenase, NAD binding domain THIMO_RS05230 PF01842 ACT domain THIMO_RS05240 PF00561 alpha/beta hydrolase fold THIMO_RS05245 PF02321 Outer membrane efflux protein THIMO_RS05250 PF01264 Chorismate synthase THIMO_RS05255 PF12832 MFS_1 like family THIMO_RS05260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THIMO_RS05260 PF00128 Alpha amylase, catalytic domain THIMO_RS05275 PF00005 ABC transporter THIMO_RS05280 PF02405 Permease MlaE THIMO_RS05285 PF05036 Sporulation related domain THIMO_RS05285 PF03330 Lytic transglycolase THIMO_RS05295 PF00245 Alkaline phosphatase THIMO_RS05305 PF00561 alpha/beta hydrolase fold THIMO_RS05320 PF07584 Aerotolerance regulator N-terminal THIMO_RS05320 PF00092 von Willebrand factor type A domain THIMO_RS05325 PF00092 von Willebrand factor type A domain THIMO_RS05335 PF01882 Protein of unknown function DUF58 THIMO_RS05340 PF17863 AAA lid domain THIMO_RS05340 PF07726 ATPase family associated with various cellular activities (AAA) THIMO_RS05350 PF00679 Elongation factor G C-terminus THIMO_RS05350 PF00009 Elongation factor Tu GTP binding domain THIMO_RS05350 PF03144 Elongation factor Tu domain 2 THIMO_RS05370 PF00355 Rieske [2Fe-2S] domain THIMO_RS05375 PF01136 Peptidase family U32 THIMO_RS05380 PF01136 Peptidase family U32 THIMO_RS05385 PF04055 Radical SAM superfamily THIMO_RS05385 PF16199 Radical_SAM C-terminal domain THIMO_RS05390 PF12697 Alpha/beta hydrolase family THIMO_RS05400 PF05166 YcgL domain THIMO_RS05400 PF05116 Sucrose-6F-phosphate phosphohydrolase THIMO_RS05405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THIMO_RS05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS05420 PF03466 LysR substrate binding domain THIMO_RS05430 PF08443 RimK-like ATP-grasp domain THIMO_RS05430 PF18030 RimK PreATP-grasp domain THIMO_RS05435 PF01252 Signal peptidase (SPase) II THIMO_RS05440 PF00133 tRNA synthetases class I (I, L, M and V) THIMO_RS05440 PF06827 Zinc finger found in FPG and IleRS THIMO_RS05440 PF08264 Anticodon-binding domain of tRNA THIMO_RS05445 PF01687 Riboflavin kinase THIMO_RS05445 PF06574 FAD synthetase THIMO_RS05450 PF03023 Lipid II flippase MurJ THIMO_RS05455 PF13439 Glycosyltransferase Family 4 THIMO_RS05455 PF00534 Glycosyl transferases group 1 THIMO_RS05460 PF08448 PAS fold THIMO_RS05460 PF00563 EAL domain THIMO_RS05460 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS05495 PF02080 TrkA-C domain THIMO_RS05495 PF03600 Citrate transporter THIMO_RS05500 PF13472 GDSL-like Lipase/Acylhydrolase family THIMO_RS05505 PF12849 PBP superfamily domain THIMO_RS05510 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS05515 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS05520 PF00005 ABC transporter THIMO_RS05525 PF12849 PBP superfamily domain THIMO_RS05535 PF01544 CorA-like Mg2+ transporter protein THIMO_RS05540 PF17863 AAA lid domain THIMO_RS05540 PF07726 ATPase family associated with various cellular activities (AAA) THIMO_RS05545 PF01134 Glucose inhibited division protein A THIMO_RS05545 PF13932 GidA associated domain THIMO_RS05550 PF02527 rRNA small subunit methyltransferase G THIMO_RS05555 PF13614 AAA domain THIMO_RS05560 PF02195 ParB-like nuclease domain THIMO_RS05560 PF17762 HTH domain found in ParB protein THIMO_RS05570 PF00119 ATP synthase A chain THIMO_RS05575 PF00137 ATP synthase subunit C THIMO_RS05580 PF00430 ATP synthase B/B' CF(0) THIMO_RS05585 PF00213 ATP synthase delta (OSCP) subunit THIMO_RS05590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS05590 PF00306 ATP synthase alpha/beta chain, C terminal domain THIMO_RS05590 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIMO_RS05595 PF00231 ATP synthase THIMO_RS05600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS05600 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIMO_RS05605 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain THIMO_RS05605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THIMO_RS05610 PF12804 MobA-like NTP transferase domain THIMO_RS05610 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS05615 PF01380 SIS domain THIMO_RS05620 PF00117 Glutamine amidotransferase class-I THIMO_RS05625 PF00591 Glycosyl transferase family, a/b domain THIMO_RS05625 PF02885 Glycosyl transferase family, helical bundle domain THIMO_RS05630 PF00218 Indole-3-glycerol phosphate synthase THIMO_RS05635 PF00027 Cyclic nucleotide-binding domain THIMO_RS05635 PF13545 Crp-like helix-turn-helix domain THIMO_RS05645 PF02675 S-adenosylmethionine decarboxylase THIMO_RS05650 PF03232 Ubiquinone biosynthesis protein COQ7 THIMO_RS05655 PF13183 4Fe-4S dicluster domain THIMO_RS05655 PF02754 Cysteine-rich domain THIMO_RS05660 PF00572 Ribosomal protein L13 THIMO_RS05665 PF00380 Ribosomal protein S9/S16 THIMO_RS05675 PF00267 Gram-negative porin THIMO_RS05680 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) THIMO_RS05685 PF00291 Pyridoxal-phosphate dependent enzyme THIMO_RS05685 PF00585 C-terminal regulatory domain of Threonine dehydratase THIMO_RS05690 PF01812 5-formyltetrahydrofolate cyclo-ligase family THIMO_RS05695 PF05164 Cell division protein ZapA THIMO_RS05705 PF03695 Uncharacterised protein family (UPF0149) THIMO_RS05710 PF00557 Metallopeptidase family M24 THIMO_RS05710 PF05195 Aminopeptidase P, N-terminal domain THIMO_RS05715 PF01494 FAD binding domain THIMO_RS05720 PF01494 FAD binding domain THIMO_RS05725 PF00365 Phosphofructokinase THIMO_RS05730 PF03030 Inorganic H+ pyrophosphatase THIMO_RS05735 PF00719 Inorganic pyrophosphatase THIMO_RS05740 PF01967 MoaC family THIMO_RS05750 PF01926 50S ribosome-binding GTPase THIMO_RS05765 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS05765 PF14602 Hexapeptide repeat of succinyl-transferase THIMO_RS05765 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal THIMO_RS05770 PF00155 Aminotransferase class I and II THIMO_RS05790 PF00793 DAHP synthetase I family THIMO_RS05800 PF02867 Ribonucleotide reductase, barrel domain THIMO_RS05800 PF03477 ATP cone domain THIMO_RS05800 PF00317 Ribonucleotide reductase, all-alpha domain THIMO_RS05810 PF01230 HIT domain THIMO_RS05815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIMO_RS05825 PF00890 FAD binding domain THIMO_RS05830 PF13187 4Fe-4S dicluster domain THIMO_RS05830 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit THIMO_RS05845 PF00682 HMGL-like THIMO_RS05845 PF07836 DmpG-like communication domain THIMO_RS05860 PF00171 Aldehyde dehydrogenase family THIMO_RS05865 PF01171 PP-loop family THIMO_RS05870 PF00873 AcrB/AcrD/AcrF family THIMO_RS05885 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS05885 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS05885 PF00563 EAL domain THIMO_RS05895 PF00171 Aldehyde dehydrogenase family THIMO_RS05900 PF10415 Fumarase C C-terminus THIMO_RS05900 PF00206 Lyase THIMO_RS05910 PF00072 Response regulator receiver domain THIMO_RS05925 PF02386 Cation transport protein THIMO_RS05930 PF02254 TrkA-N domain THIMO_RS05930 PF02080 TrkA-C domain THIMO_RS05935 PF02954 Bacterial regulatory protein, Fis family THIMO_RS05935 PF00072 Response regulator receiver domain THIMO_RS05935 PF00158 Sigma-54 interaction domain THIMO_RS05940 PF00989 PAS fold THIMO_RS05940 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS05940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS05940 PF00672 HAMP domain THIMO_RS05950 PF01189 16S rRNA methyltransferase RsmB/F THIMO_RS05950 PF01029 NusB family THIMO_RS05955 PF00551 Formyl transferase THIMO_RS05955 PF02911 Formyl transferase, C-terminal domain THIMO_RS05960 PF01327 Polypeptide deformylase THIMO_RS05970 PF17782 DprA winged helix domain THIMO_RS05970 PF02481 DNA recombination-mediator protein A THIMO_RS05975 PF04361 Protein of unknown function (DUF494) THIMO_RS05985 PF00950 ABC 3 transport family THIMO_RS05990 PF00950 ABC 3 transport family THIMO_RS05995 PF00005 ABC transporter THIMO_RS06000 PF01297 Zinc-uptake complex component A periplasmic THIMO_RS06005 PF13368 Topoisomerase C-terminal repeat THIMO_RS06005 PF01751 Toprim domain THIMO_RS06005 PF01131 DNA topoisomerase THIMO_RS06010 PF01300 Telomere recombination THIMO_RS06020 PF00149 Calcineurin-like phosphoesterase THIMO_RS06025 PF01634 ATP phosphoribosyltransferase THIMO_RS06025 PF08029 HisG, C-terminal domain THIMO_RS06035 PF01464 Transglycosylase SLT domain THIMO_RS06040 PF00311 Phosphoenolpyruvate carboxylase THIMO_RS06045 PF02386 Cation transport protein THIMO_RS06050 PF03658 RnfH family Ubiquitin THIMO_RS06055 PF02508 Rnf-Nqr subunit, membrane protein THIMO_RS06060 PF04205 FMN-binding domain THIMO_RS06065 PF03116 NQR2, RnfD, RnfE family THIMO_RS06070 PF13237 4Fe-4S dicluster domain THIMO_RS06070 PF13375 RnfC Barrel sandwich hybrid domain THIMO_RS06070 PF10531 SLBB domain THIMO_RS06070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIMO_RS06075 PF04060 Putative Fe-S cluster THIMO_RS06080 PF02508 Rnf-Nqr subunit, membrane protein THIMO_RS06085 PF00989 PAS fold THIMO_RS06085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS06090 PF02954 Bacterial regulatory protein, Fis family THIMO_RS06090 PF00158 Sigma-54 interaction domain THIMO_RS06090 PF13185 GAF domain THIMO_RS06095 PF09827 CRISPR associated protein Cas2 THIMO_RS06100 PF01930 Domain of unknown function DUF83 THIMO_RS06100 PF01867 CRISPR associated protein Cas1 THIMO_RS06175 PF01008 Initiation factor 2 subunit family THIMO_RS06180 PF01979 Amidohydrolase family THIMO_RS06190 PF00571 CBS domain THIMO_RS06190 PF01368 DHH family THIMO_RS06190 PF01743 Poly A polymerase head domain THIMO_RS06190 PF12627 Probable RNA and SrmB- binding site of polymerase A THIMO_RS06190 PF02272 DHHA1 domain THIMO_RS06195 PF00474 Sodium:solute symporter family THIMO_RS06205 PF14821 Threonine synthase N terminus THIMO_RS06205 PF00291 Pyridoxal-phosphate dependent enzyme THIMO_RS06210 PF08502 LeuA allosteric (dimerisation) domain THIMO_RS06210 PF00682 HMGL-like THIMO_RS06220 PF03989 DNA gyrase C-terminal domain, beta-propeller THIMO_RS06220 PF00521 DNA gyrase/topoisomerase IV, subunit A THIMO_RS06225 PF00266 Aminotransferase class-V THIMO_RS06230 PF01842 ACT domain THIMO_RS06230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THIMO_RS06230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THIMO_RS06235 PF01817 Chorismate mutase type II THIMO_RS06235 PF01842 ACT domain THIMO_RS06235 PF00800 Prephenate dehydratase THIMO_RS06240 PF00155 Aminotransferase class I and II THIMO_RS06245 PF02153 Prephenate dehydrogenase THIMO_RS06250 PF03600 Citrate transporter THIMO_RS06265 PF02899 Phage integrase, N-terminal SAM-like domain THIMO_RS06265 PF00589 Phage integrase family THIMO_RS06270 PF03600 Citrate transporter THIMO_RS06270 PF02080 TrkA-C domain THIMO_RS06285 PF00348 Polyprenyl synthetase THIMO_RS06290 PF00829 Ribosomal prokaryotic L21 protein THIMO_RS06295 PF01016 Ribosomal L27 protein THIMO_RS06300 PF01926 50S ribosome-binding GTPase THIMO_RS06300 PF01018 GTP1/OBG THIMO_RS06305 PF00696 Amino acid kinase family THIMO_RS06305 PF01472 PUA domain THIMO_RS06310 PF00929 Exonuclease THIMO_RS06315 PF13545 Crp-like helix-turn-helix domain THIMO_RS06315 PF00027 Cyclic nucleotide-binding domain THIMO_RS06325 PF06418 CTP synthase N-terminus THIMO_RS06325 PF00117 Glutamine amidotransferase class-I THIMO_RS06330 PF00793 DAHP synthetase I family THIMO_RS06335 PF03952 Enolase, N-terminal domain THIMO_RS06335 PF00113 Enolase, C-terminal TIM barrel domain THIMO_RS06340 PF04977 Septum formation initiator THIMO_RS06345 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THIMO_RS06350 PF02542 YgbB family THIMO_RS06355 PF01142 tRNA pseudouridine synthase D (TruD) THIMO_RS06365 PF01975 Survival protein SurE THIMO_RS06375 PF09335 SNARE associated Golgi protein THIMO_RS06380 PF01476 LysM domain THIMO_RS06380 PF01551 Peptidase family M23 THIMO_RS06385 PF04545 Sigma-70, region 4 THIMO_RS06385 PF04539 Sigma-70 region 3 THIMO_RS06385 PF04542 Sigma-70 region 2 THIMO_RS06385 PF00140 Sigma-70 factor, region 1.2 THIMO_RS06405 PF00115 Cytochrome C and Quinol oxidase polypeptide I THIMO_RS06420 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP THIMO_RS06420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THIMO_RS06425 PF12801 4Fe-4S binding domain THIMO_RS06425 PF13746 4Fe-4S dicluster domain THIMO_RS06425 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase THIMO_RS06435 PF00403 Heavy-metal-associated domain THIMO_RS06445 PF04055 Radical SAM superfamily THIMO_RS06450 PF03309 Type III pantothenate kinase THIMO_RS06455 PF00862 Sucrose synthase THIMO_RS06455 PF00534 Glycosyl transferases group 1 THIMO_RS06460 PF01161 Phosphatidylethanolamine-binding protein THIMO_RS06470 PF03918 Cytochrome C biogenesis protein THIMO_RS06475 PF08534 Redoxin THIMO_RS06480 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal THIMO_RS06480 PF01578 Cytochrome C assembly protein THIMO_RS06485 PF03100 CcmE THIMO_RS06495 PF01578 Cytochrome C assembly protein THIMO_RS06500 PF03379 CcmB protein THIMO_RS06505 PF00005 ABC transporter THIMO_RS06510 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THIMO_RS06510 PF03900 Porphobilinogen deaminase, C-terminal domain THIMO_RS06515 PF02602 Uroporphyrinogen-III synthase HemD THIMO_RS06540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase THIMO_RS06545 PF01432 Peptidase family M3 THIMO_RS06555 PF00132 Bacterial transferase hexapeptide (six repeats) THIMO_RS06560 PF02470 MlaD protein THIMO_RS06565 PF04403 Paraquat-inducible protein A THIMO_RS06570 PF01641 SelR domain THIMO_RS06580 PF01329 Pterin 4 alpha carbinolamine dehydratase THIMO_RS06600 PF02146 Sir2 family THIMO_RS06630 PF03358 NADPH-dependent FMN reductase THIMO_RS06645 PF00072 Response regulator receiver domain THIMO_RS06645 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS06650 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS06650 PF08446 PAS fold THIMO_RS06650 PF00360 Phytochrome region THIMO_RS06650 PF01590 GAF domain THIMO_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS06655 PF02811 PHP domain THIMO_RS06655 PF14716 Helix-hairpin-helix domain THIMO_RS06655 PF14791 DNA polymerase beta thumb THIMO_RS06660 PF00300 Histidine phosphatase superfamily (branch 1) THIMO_RS06690 PF13194 Domain of unknown function (DUF4010) THIMO_RS06705 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THIMO_RS06705 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS06715 PF02954 Bacterial regulatory protein, Fis family THIMO_RS06715 PF00072 Response regulator receiver domain THIMO_RS06715 PF00158 Sigma-54 interaction domain THIMO_RS06735 PF01180 Dihydroorotate dehydrogenase THIMO_RS06740 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THIMO_RS06740 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase THIMO_RS06740 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THIMO_RS06740 PF10371 Domain of unknown function THIMO_RS06740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIMO_RS06745 PF00282 Pyridoxal-dependent decarboxylase conserved domain THIMO_RS06755 PF09967 VWA-like domain (DUF2201) THIMO_RS06755 PF13203 Putative metallopeptidase domain THIMO_RS06785 PF01435 Peptidase family M48 THIMO_RS06785 PF13181 Tetratricopeptide repeat THIMO_RS06790 PF13439 Glycosyltransferase Family 4 THIMO_RS06790 PF00534 Glycosyl transferases group 1 THIMO_RS06795 PF00534 Glycosyl transferases group 1 THIMO_RS06800 PF00534 Glycosyl transferases group 1 THIMO_RS06800 PF13439 Glycosyltransferase Family 4 THIMO_RS06855 PF00005 ABC transporter THIMO_RS06855 PF02687 FtsX-like permease family THIMO_RS06855 PF12704 MacB-like periplasmic core domain THIMO_RS06860 PF00005 ABC transporter THIMO_RS06860 PF02687 FtsX-like permease family THIMO_RS06860 PF12704 MacB-like periplasmic core domain THIMO_RS06865 PF00005 ABC transporter THIMO_RS06875 PF16197 Ketoacyl-synthetase C-terminal extension THIMO_RS06875 PF14765 Polyketide synthase dehydratase THIMO_RS06875 PF00550 Phosphopantetheine attachment site THIMO_RS06875 PF08659 KR domain THIMO_RS06875 PF00109 Beta-ketoacyl synthase, N-terminal domain THIMO_RS06875 PF02801 Beta-ketoacyl synthase, C-terminal domain THIMO_RS06875 PF00698 Acyl transferase domain THIMO_RS06880 PF14765 Polyketide synthase dehydratase THIMO_RS06880 PF00109 Beta-ketoacyl synthase, N-terminal domain THIMO_RS06880 PF08240 Alcohol dehydrogenase GroES-like domain THIMO_RS06880 PF02801 Beta-ketoacyl synthase, C-terminal domain THIMO_RS06880 PF08659 KR domain THIMO_RS06880 PF00698 Acyl transferase domain THIMO_RS06880 PF00550 Phosphopantetheine attachment site THIMO_RS06880 PF16197 Ketoacyl-synthetase C-terminal extension THIMO_RS06880 PF00107 Zinc-binding dehydrogenase THIMO_RS06885 PF00550 Phosphopantetheine attachment site THIMO_RS06900 PF00561 alpha/beta hydrolase fold THIMO_RS06905 PF00561 alpha/beta hydrolase fold THIMO_RS06915 PF07715 TonB-dependent Receptor Plug Domain THIMO_RS06915 PF00593 TonB dependent receptor THIMO_RS06935 PF00534 Glycosyl transferases group 1 THIMO_RS06935 PF13439 Glycosyltransferase Family 4 THIMO_RS06945 PF02310 B12 binding domain THIMO_RS06945 PF13282 Domain of unknown function (DUF4070) THIMO_RS06945 PF04055 Radical SAM superfamily THIMO_RS06955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS06955 PF03466 LysR substrate binding domain THIMO_RS06960 PF08267 Cobalamin-independent synthase, N-terminal domain THIMO_RS06960 PF01717 Cobalamin-independent synthase, Catalytic domain THIMO_RS06965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THIMO_RS06970 PF01569 PAP2 superfamily THIMO_RS06975 PF13439 Glycosyltransferase Family 4 THIMO_RS06975 PF00534 Glycosyl transferases group 1 THIMO_RS06995 PF00293 NUDIX domain THIMO_RS07000 PF01590 GAF domain THIMO_RS07000 PF05524 PEP-utilising enzyme, N-terminal THIMO_RS07000 PF02896 PEP-utilising enzyme, TIM barrel domain THIMO_RS07000 PF00391 PEP-utilising enzyme, mobile domain THIMO_RS07005 PF02913 FAD linked oxidases, C-terminal domain THIMO_RS07005 PF01565 FAD binding domain THIMO_RS07015 PF02021 Uncharacterised protein family UPF0102 THIMO_RS07020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS07025 PF00206 Lyase THIMO_RS07025 PF08328 Adenylosuccinate lyase C-terminal THIMO_RS07030 PF00330 Aconitase family (aconitate hydratase) THIMO_RS07030 PF00694 Aconitase C-terminal domain THIMO_RS07035 PF01235 Sodium:alanine symporter family THIMO_RS07040 PF01722 BolA-like protein THIMO_RS07075 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain THIMO_RS07075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain THIMO_RS07080 PF02899 Phage integrase, N-terminal SAM-like domain THIMO_RS07080 PF00589 Phage integrase family THIMO_RS07085 PF04461 Protein of unknown function (DUF520) THIMO_RS07090 PF13098 Thioredoxin-like domain THIMO_RS07090 PF10411 Disulfide bond isomerase protein N-terminus THIMO_RS07100 PF05685 Putative restriction endonuclease THIMO_RS07115 PF01813 ATP synthase subunit D THIMO_RS07120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS07125 PF16886 ATPsynthase alpha/beta subunit N-term extension THIMO_RS07125 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIMO_RS07125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS07130 PF01991 ATP synthase (E/31 kDa) subunit THIMO_RS07140 PF00137 ATP synthase subunit C THIMO_RS07145 PF01496 V-type ATPase 116kDa subunit family THIMO_RS07195 PF03781 Sulfatase-modifying factor enzyme 1 THIMO_RS07205 PF01985 CRS1 / YhbY (CRM) domain THIMO_RS07220 PF01250 Ribosomal protein S6 THIMO_RS07225 PF01084 Ribosomal protein S18 THIMO_RS07235 PF03948 Ribosomal protein L9, C-terminal domain THIMO_RS07235 PF01281 Ribosomal protein L9, N-terminal domain THIMO_RS07240 PF03796 DnaB-like helicase C terminal domain THIMO_RS07240 PF00772 DnaB-like helicase N terminal domain THIMO_RS07245 PF00842 Alanine racemase, C-terminal domain THIMO_RS07245 PF01168 Alanine racemase, N-terminal domain THIMO_RS07250 PF18073 Rubredoxin metal binding domain THIMO_RS07255 PF00534 Glycosyl transferases group 1 THIMO_RS07255 PF13579 Glycosyl transferase 4-like domain THIMO_RS07260 PF09335 SNARE associated Golgi protein THIMO_RS07265 PF05532 CsbD-like THIMO_RS07275 PF01594 AI-2E family transporter THIMO_RS07280 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THIMO_RS07280 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THIMO_RS07285 PF00080 Copper/zinc superoxide dismutase (SODC) THIMO_RS07305 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) THIMO_RS07330 PF00005 ABC transporter THIMO_RS07335 PF01061 ABC-2 type transporter THIMO_RS07335 PF00498 FHA domain THIMO_RS07335 PF00005 ABC transporter THIMO_RS07340 PF03793 PASTA domain THIMO_RS07340 PF00069 Protein kinase domain THIMO_RS07360 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS07365 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS07370 PF00497 Bacterial extracellular solute-binding proteins, family 3 THIMO_RS07380 PF02779 Transketolase, pyrimidine binding domain THIMO_RS07380 PF02780 Transketolase, C-terminal domain THIMO_RS07380 PF00456 Transketolase, thiamine diphosphate binding domain THIMO_RS07395 PF02386 Cation transport protein THIMO_RS07435 PF03631 Virulence factor BrkB THIMO_RS07440 PF06004 Bacterial protein of unknown function (DUF903) THIMO_RS07445 PF04607 Region found in RelA / SpoT proteins THIMO_RS07445 PF02824 TGS domain THIMO_RS07445 PF13291 ACT domain THIMO_RS07465 PF00005 ABC transporter THIMO_RS07470 PF13472 GDSL-like Lipase/Acylhydrolase family THIMO_RS07480 PF02470 MlaD protein THIMO_RS07495 PF00072 Response regulator receiver domain THIMO_RS07495 PF01339 CheB methylesterase THIMO_RS07505 PF03699 Uncharacterised protein family (UPF0182) THIMO_RS07520 PF01527 Transposase THIMO_RS07530 PF04204 Homoserine O-succinyltransferase THIMO_RS07540 PF00384 Molybdopterin oxidoreductase THIMO_RS07540 PF01568 Molydopterin dinucleotide binding domain THIMO_RS07540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THIMO_RS07545 PF12800 4Fe-4S binding domain THIMO_RS07545 PF13247 4Fe-4S dicluster domain THIMO_RS07550 PF04976 DMSO reductase anchor subunit (DmsC) THIMO_RS07555 PF04264 YceI-like domain THIMO_RS07560 PF01292 Prokaryotic cytochrome b561 THIMO_RS07580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIMO_RS07580 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS07585 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS07585 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THIMO_RS07590 PF03350 Uncharacterized protein family, UPF0114 THIMO_RS07595 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain THIMO_RS07595 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain THIMO_RS07600 PF00271 Helicase conserved C-terminal domain THIMO_RS07600 PF08494 DEAD/H associated THIMO_RS07600 PF00270 DEAD/DEAH box helicase THIMO_RS07620 PF03976 Polyphosphate kinase 2 (PPK2) THIMO_RS07625 PF03061 Thioesterase superfamily THIMO_RS07645 PF00873 AcrB/AcrD/AcrF family THIMO_RS07655 PF17092 Penicillin-binding protein OB-like domain THIMO_RS07655 PF00912 Transglycosylase THIMO_RS07655 PF00905 Penicillin binding protein transpeptidase domain THIMO_RS07660 PF00271 Helicase conserved C-terminal domain THIMO_RS07660 PF04408 Helicase associated domain (HA2) THIMO_RS07660 PF00270 DEAD/DEAH box helicase THIMO_RS07660 PF08482 ATP-dependent helicase C-terminal THIMO_RS07670 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS07670 PF00072 Response regulator receiver domain THIMO_RS07680 PF06071 Protein of unknown function (DUF933) THIMO_RS07680 PF01926 50S ribosome-binding GTPase THIMO_RS07700 PF03411 Penicillin-insensitive murein endopeptidase THIMO_RS07705 PF00072 Response regulator receiver domain THIMO_RS07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS07705 PF00672 HAMP domain THIMO_RS07705 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS07705 PF01627 Hpt domain THIMO_RS07705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIMO_RS07710 PF00291 Pyridoxal-phosphate dependent enzyme THIMO_RS07715 PF05958 tRNA (Uracil-5-)-methyltransferase THIMO_RS07720 PF03205 Molybdopterin guanine dinucleotide synthesis protein B THIMO_RS07730 PF14579 Helix-hairpin-helix motif THIMO_RS07730 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THIMO_RS07730 PF01336 OB-fold nucleic acid binding domain THIMO_RS07730 PF02811 PHP domain THIMO_RS07730 PF07733 Bacterial DNA polymerase III alpha NTPase domain THIMO_RS07740 PF00154 recA bacterial DNA recombination protein THIMO_RS07745 PF00717 Peptidase S24-like THIMO_RS07745 PF01726 LexA DNA binding domain THIMO_RS07750 PF01177 Asp/Glu/Hydantoin racemase THIMO_RS07775 PF00923 Transaldolase/Fructose-6-phosphate aldolase THIMO_RS07780 PF01370 NAD dependent epimerase/dehydratase family THIMO_RS07790 PF12697 Alpha/beta hydrolase family THIMO_RS07795 PF00551 Formyl transferase THIMO_RS07800 PF02769 AIR synthase related protein, C-terminal domain THIMO_RS07800 PF00586 AIR synthase related protein, N-terminal domain THIMO_RS07805 PF01066 CDP-alcohol phosphatidyltransferase THIMO_RS07810 PF00308 Bacterial dnaA protein THIMO_RS07815 PF03358 NADPH-dependent FMN reductase THIMO_RS07820 PF00708 Acylphosphatase THIMO_RS07835 PF00561 alpha/beta hydrolase fold THIMO_RS07840 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) THIMO_RS07845 PF02803 Thiolase, C-terminal domain THIMO_RS07845 PF00108 Thiolase, N-terminal domain THIMO_RS07850 PF07879 PHB/PHA accumulation regulator DNA-binding domain THIMO_RS07850 PF05233 PHB accumulation regulatory domain THIMO_RS07855 PF09361 Phasin protein THIMO_RS07860 PF00106 short chain dehydrogenase THIMO_RS07865 PF01784 NIF3 (NGG1p interacting factor 3) THIMO_RS07870 PF00355 Rieske [2Fe-2S] domain THIMO_RS07870 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THIMO_RS07875 PF00033 Cytochrome b/b6/petB THIMO_RS07875 PF00032 Cytochrome b(C-terminal)/b6/petD THIMO_RS07880 PF02167 Cytochrome C1 family THIMO_RS07885 PF02798 Glutathione S-transferase, N-terminal domain THIMO_RS07885 PF00043 Glutathione S-transferase, C-terminal domain THIMO_RS07890 PF04386 Stringent starvation protein B THIMO_RS07920 PF01479 S4 domain THIMO_RS07925 PF00462 Glutaredoxin THIMO_RS07930 PF11940 Domain of unknown function (DUF3458) Ig-like fold THIMO_RS07930 PF01433 Peptidase family M1 domain THIMO_RS07930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats THIMO_RS07950 PF02371 Transposase IS116/IS110/IS902 family THIMO_RS07950 PF01548 Transposase THIMO_RS07970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS07975 PF00005 ABC transporter THIMO_RS07995 PF08669 Glycine cleavage T-protein C-terminal barrel domain THIMO_RS07995 PF01571 Aminomethyltransferase folate-binding domain THIMO_RS08000 PF01597 Glycine cleavage H-protein THIMO_RS08005 PF02347 Glycine cleavage system P-protein THIMO_RS08010 PF08534 Redoxin THIMO_RS08015 PF02347 Glycine cleavage system P-protein THIMO_RS08020 PF01219 Prokaryotic diacylglycerol kinase THIMO_RS08025 PF00994 Probable molybdopterin binding domain THIMO_RS08030 PF03453 MoeA N-terminal region (domain I and II) THIMO_RS08030 PF03454 MoeA C-terminal region (domain IV) THIMO_RS08030 PF00994 Probable molybdopterin binding domain THIMO_RS08035 PF02597 ThiS family THIMO_RS08040 PF03144 Elongation factor Tu domain 2 THIMO_RS08040 PF00679 Elongation factor G C-terminus THIMO_RS08040 PF14492 Elongation Factor G, domain II THIMO_RS08040 PF03764 Elongation factor G, domain IV THIMO_RS08040 PF00009 Elongation factor Tu GTP binding domain THIMO_RS08045 PF03734 L,D-transpeptidase catalytic domain THIMO_RS08045 PF17969 L,D-transpeptidase C-terminal domain THIMO_RS08060 PF00072 Response regulator receiver domain THIMO_RS08065 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS08065 PF01627 Hpt domain THIMO_RS08065 PF00072 Response regulator receiver domain THIMO_RS08065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS08070 PF11741 AMIN domain THIMO_RS08070 PF01520 N-acetylmuramoyl-L-alanine amidase THIMO_RS08075 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THIMO_RS08080 PF01256 Carbohydrate kinase THIMO_RS08080 PF03853 YjeF-related protein N-terminus THIMO_RS08085 PF00764 Arginosuccinate synthase THIMO_RS08090 PF01928 CYTH domain THIMO_RS08095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THIMO_RS08100 PF00268 Ribonucleotide reductase, small chain THIMO_RS08105 PF02780 Transketolase, C-terminal domain THIMO_RS08105 PF02779 Transketolase, pyrimidine binding domain THIMO_RS08110 PF00676 Dehydrogenase E1 component THIMO_RS08115 PF03466 LysR substrate binding domain THIMO_RS08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS08125 PF01063 Amino-transferase class IV THIMO_RS08130 PF08335 GlnD PII-uridylyltransferase THIMO_RS08130 PF03710 Glutamate-ammonia ligase adenylyltransferase THIMO_RS08140 PF01455 HupF/HypC family THIMO_RS08150 PF03618 Kinase/pyrophosphorylase THIMO_RS08165 PF18073 Rubredoxin metal binding domain THIMO_RS08170 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THIMO_RS08175 PF00483 Nucleotidyl transferase THIMO_RS08180 PF01895 PhoU domain THIMO_RS08200 PF01381 Helix-turn-helix THIMO_RS08215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THIMO_RS08215 PF00128 Alpha amylase, catalytic domain THIMO_RS08220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS08225 PF00072 Response regulator receiver domain THIMO_RS08225 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS08260 PF00027 Cyclic nucleotide-binding domain THIMO_RS08260 PF13545 Crp-like helix-turn-helix domain THIMO_RS08265 PF03063 Prismane/CO dehydrogenase family THIMO_RS08270 PF02698 DUF218 domain THIMO_RS08275 PF13667 ThiC-associated domain THIMO_RS08275 PF01964 Radical SAM ThiC family THIMO_RS08280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THIMO_RS08280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THIMO_RS08290 PF01510 N-acetylmuramoyl-L-alanine amidase THIMO_RS08305 PF03485 Arginyl tRNA synthetase N terminal domain THIMO_RS08305 PF05746 DALR anticodon binding domain THIMO_RS08305 PF00750 tRNA synthetases class I (R) THIMO_RS08310 PF00795 Carbon-nitrogen hydrolase THIMO_RS08310 PF00583 Acetyltransferase (GNAT) family THIMO_RS08315 PF00107 Zinc-binding dehydrogenase THIMO_RS08315 PF08240 Alcohol dehydrogenase GroES-like domain THIMO_RS08325 PF00011 Hsp20/alpha crystallin family THIMO_RS08330 PF07995 Glucose / Sorbosone dehydrogenase THIMO_RS08400 PF01547 Bacterial extracellular solute-binding protein THIMO_RS08405 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS08410 PF00005 ABC transporter THIMO_RS08410 PF12857 TOBE-like domain THIMO_RS08435 PF00589 Phage integrase family THIMO_RS08435 PF13356 Arm DNA-binding domain THIMO_RS08490 PF00176 SNF2 family N-terminal domain THIMO_RS08490 PF00271 Helicase conserved C-terminal domain THIMO_RS08490 PF12419 SNF2 Helicase protein THIMO_RS08510 PF02649 Type I GTP cyclohydrolase folE2 THIMO_RS08515 PF00348 Polyprenyl synthetase THIMO_RS08520 PF02609 Exonuclease VII small subunit THIMO_RS08525 PF00986 DNA gyrase B subunit, carboxyl terminus THIMO_RS08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS08525 PF01751 Toprim domain THIMO_RS08525 PF00204 DNA gyrase B THIMO_RS08535 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) THIMO_RS08540 PF01899 Na+/H+ ion antiporter subunit THIMO_RS08545 PF00361 Proton-conducting membrane transporter THIMO_RS08550 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THIMO_RS08555 PF13244 Domain of unknown function (DUF4040) THIMO_RS08555 PF00361 Proton-conducting membrane transporter THIMO_RS08555 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THIMO_RS08555 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THIMO_RS08560 PF01545 Cation efflux family THIMO_RS08570 PF07670 Nucleoside recognition THIMO_RS08570 PF02421 Ferrous iron transport protein B THIMO_RS08570 PF17910 FeoB cytosolic helical domain THIMO_RS08570 PF07664 Ferrous iron transport protein B C terminus THIMO_RS08575 PF04023 FeoA domain THIMO_RS08585 PF13649 Methyltransferase domain THIMO_RS08590 PF08241 Methyltransferase domain THIMO_RS08595 PF01227 GTP cyclohydrolase I THIMO_RS08600 PF13537 Glutamine amidotransferase domain THIMO_RS08600 PF00733 Asparagine synthase THIMO_RS08605 PF08443 RimK-like ATP-grasp domain THIMO_RS08605 PF08245 Mur ligase middle domain THIMO_RS08605 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS08610 PF05343 M42 glutamyl aminopeptidase THIMO_RS08615 PF03193 RsgA GTPase THIMO_RS08620 PF00929 Exonuclease THIMO_RS08625 PF08331 Domain of unknown function (DUF1730) THIMO_RS08635 PF00730 HhH-GPD superfamily base excision DNA repair protein THIMO_RS08635 PF10576 Iron-sulfur binding domain of endonuclease III THIMO_RS08635 PF00633 Helix-hairpin-helix motif THIMO_RS08640 PF00850 Histone deacetylase domain THIMO_RS08645 PF00583 Acetyltransferase (GNAT) family THIMO_RS08645 PF13380 CoA binding domain THIMO_RS08645 PF13607 Succinyl-CoA ligase like flavodoxin domain THIMO_RS08650 PF01055 Glycosyl hydrolases family 31 THIMO_RS08650 PF17137 Domain of unknown function (DUF5110) THIMO_RS08650 PF13802 Galactose mutarotase-like THIMO_RS08650 PF16338 Domain of unknown function (DUF4968) THIMO_RS08660 PF01022 Bacterial regulatory protein, arsR family THIMO_RS08665 PF01451 Low molecular weight phosphotyrosine protein phosphatase THIMO_RS08670 PF01758 Sodium Bile acid symporter family THIMO_RS08675 PF03773 Predicted permease THIMO_RS08690 PF00155 Aminotransferase class I and II THIMO_RS08695 PF00271 Helicase conserved C-terminal domain THIMO_RS08695 PF17757 UvrB interaction domain THIMO_RS08695 PF12344 Ultra-violet resistance protein B THIMO_RS08695 PF04851 Type III restriction enzyme, res subunit THIMO_RS08695 PF02151 UvrB/uvrC motif THIMO_RS08710 PF04542 Sigma-70 region 2 THIMO_RS08710 PF08281 Sigma-70, region 4 THIMO_RS08720 PF17188 MucB/RseB C-terminal domain THIMO_RS08720 PF03888 MucB/RseB N-terminal domain THIMO_RS08730 PF13180 PDZ domain THIMO_RS08735 PF00679 Elongation factor G C-terminus THIMO_RS08735 PF00009 Elongation factor Tu GTP binding domain THIMO_RS08735 PF06421 GTP-binding protein LepA C-terminus THIMO_RS08740 PF10502 Signal peptidase, peptidase S26 THIMO_RS08750 PF14622 Ribonuclease-III-like THIMO_RS08750 PF00035 Double-stranded RNA binding motif THIMO_RS08755 PF07650 KH domain THIMO_RS08755 PF01926 50S ribosome-binding GTPase THIMO_RS08760 PF11967 Recombination protein O N terminal THIMO_RS08760 PF02565 Recombination protein O C terminal THIMO_RS08765 PF00483 Nucleotidyl transferase THIMO_RS08785 PF03600 Citrate transporter THIMO_RS08795 PF00762 Ferrochelatase THIMO_RS08815 PF00690 Cation transporter/ATPase, N-terminus THIMO_RS08815 PF00689 Cation transporting ATPase, C-terminus THIMO_RS08820 PF00561 alpha/beta hydrolase fold THIMO_RS08825 PF02580 D-Tyr-tRNA(Tyr) deacylase THIMO_RS08830 PF00475 Imidazoleglycerol-phosphate dehydratase THIMO_RS08835 PF00977 Histidine biosynthesis protein THIMO_RS08840 PF01502 Phosphoribosyl-AMP cyclohydrolase THIMO_RS08845 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THIMO_RS08850 PF02416 mttA/Hcf106 family THIMO_RS08855 PF02416 mttA/Hcf106 family THIMO_RS08860 PF00902 Sec-independent protein translocase protein (TatC) THIMO_RS08865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS08865 PF03466 LysR substrate binding domain THIMO_RS08870 PF02254 TrkA-N domain THIMO_RS08870 PF00999 Sodium/hydrogen exchanger family THIMO_RS08880 PF07075 Protein of unknown function (DUF1343) THIMO_RS08885 PF00977 Histidine biosynthesis protein THIMO_RS08895 PF00571 CBS domain THIMO_RS08895 PF02163 Peptidase family M50 THIMO_RS08905 PF01965 DJ-1/PfpI family THIMO_RS08915 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THIMO_RS08920 PF01427 D-ala-D-ala dipeptidase THIMO_RS08925 PF00465 Iron-containing alcohol dehydrogenase THIMO_RS08930 PF06719 AraC-type transcriptional regulator N-terminus THIMO_RS08930 PF12833 Helix-turn-helix domain THIMO_RS08935 PF00873 AcrB/AcrD/AcrF family THIMO_RS08940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS08945 PF01734 Patatin-like phospholipase THIMO_RS08955 PF08241 Methyltransferase domain THIMO_RS08965 PF01292 Prokaryotic cytochrome b561 THIMO_RS08975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THIMO_RS08980 PF02224 Cytidylate kinase THIMO_RS08985 PF00575 S1 RNA binding domain THIMO_RS08990 PF00216 Bacterial DNA-binding protein THIMO_RS09000 PF04314 Copper chaperone PCu(A)C THIMO_RS09010 PF13411 MerR HTH family regulatory protein THIMO_RS09015 PF00881 Nitroreductase family THIMO_RS09020 PF01022 Bacterial regulatory protein, arsR family THIMO_RS09025 PF01926 50S ribosome-binding GTPase THIMO_RS09025 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THIMO_RS09030 PF13360 PQQ-like domain THIMO_RS09035 PF09976 Tetratricopeptide repeat-like domain THIMO_RS09040 PF03129 Anticodon binding domain THIMO_RS09040 PF13393 Histidyl-tRNA synthetase THIMO_RS09045 PF13464 Domain of unknown function (DUF4115) THIMO_RS09055 PF04055 Radical SAM superfamily THIMO_RS09060 PF00334 Nucleoside diphosphate kinase THIMO_RS09065 PF03734 L,D-transpeptidase catalytic domain THIMO_RS09070 PF10672 S-adenosylmethionine-dependent methyltransferase THIMO_RS09070 PF17785 PUA-like domain THIMO_RS09085 PF01048 Phosphorylase superfamily THIMO_RS09135 PF01381 Helix-turn-helix THIMO_RS09150 PF00924 Mechanosensitive ion channel THIMO_RS09160 PF00343 Carbohydrate phosphorylase THIMO_RS09165 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase THIMO_RS09165 PF09363 XFP C-terminal domain THIMO_RS09165 PF09364 XFP N-terminal domain THIMO_RS09175 PF02913 FAD linked oxidases, C-terminal domain THIMO_RS09175 PF01565 FAD binding domain THIMO_RS09180 PF01565 FAD binding domain THIMO_RS09185 PF02754 Cysteine-rich domain THIMO_RS09185 PF13183 4Fe-4S dicluster domain THIMO_RS09190 PF00270 DEAD/DEAH box helicase THIMO_RS09190 PF00271 Helicase conserved C-terminal domain THIMO_RS09195 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) THIMO_RS09200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THIMO_RS09200 PF03129 Anticodon binding domain THIMO_RS09200 PF04073 Aminoacyl-tRNA editing domain THIMO_RS09205 PF07977 FabA-like domain THIMO_RS09210 PF00571 CBS domain THIMO_RS09210 PF03471 Transporter associated domain THIMO_RS09210 PF01595 Cyclin M transmembrane N-terminal domain THIMO_RS09225 PF05661 Protein of unknown function (DUF808) THIMO_RS09230 PF00909 Ammonium Transporter Family THIMO_RS09235 PF00873 AcrB/AcrD/AcrF family THIMO_RS09240 PF00529 HlyD membrane-fusion protein of T1SS THIMO_RS09240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS09245 PF01515 Phosphate acetyl/butaryl transferase THIMO_RS09245 PF07085 DRTGG domain THIMO_RS09250 PF00871 Acetokinase family THIMO_RS09260 PF00266 Aminotransferase class-V THIMO_RS09275 PF00534 Glycosyl transferases group 1 THIMO_RS09275 PF13439 Glycosyltransferase Family 4 THIMO_RS09285 PF01556 DnaJ C terminal domain THIMO_RS09285 PF00226 DnaJ domain THIMO_RS09290 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS09290 PF17862 AAA+ lid domain THIMO_RS09290 PF01434 Peptidase family M41 THIMO_RS09290 PF06480 FtsH Extracellular THIMO_RS09300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THIMO_RS09305 PF13439 Glycosyltransferase Family 4 THIMO_RS09305 PF00534 Glycosyl transferases group 1 THIMO_RS09310 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THIMO_RS09320 PF14306 PUA-like domain THIMO_RS09320 PF01747 ATP-sulfurylase THIMO_RS09335 PF01464 Transglycosylase SLT domain THIMO_RS09340 PF05951 Bacterial protein of unknown function (DUF882) THIMO_RS09345 PF00773 RNB domain THIMO_RS09350 PF01571 Aminomethyltransferase folate-binding domain THIMO_RS09355 PF00152 tRNA synthetases class II (D, K and N) THIMO_RS09355 PF01336 OB-fold nucleic acid binding domain THIMO_RS09360 PF00472 RF-1 domain THIMO_RS09360 PF03462 PCRF domain THIMO_RS09365 PF00708 Acylphosphatase THIMO_RS09365 PF01300 Telomere recombination THIMO_RS09365 PF07503 HypF finger THIMO_RS09365 PF17788 HypF Kae1-like domain THIMO_RS09370 PF00899 ThiF family THIMO_RS09375 PF01026 TatD related DNase THIMO_RS09385 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) THIMO_RS09400 PF00753 Metallo-beta-lactamase superfamily THIMO_RS09410 PF00582 Universal stress protein family THIMO_RS09415 PF02785 Biotin carboxylase C-terminal domain THIMO_RS09415 PF00289 Biotin carboxylase, N-terminal domain THIMO_RS09415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THIMO_RS09420 PF00682 HMGL-like THIMO_RS09420 PF00364 Biotin-requiring enzyme THIMO_RS09420 PF02436 Conserved carboxylase domain THIMO_RS09430 PF11127 Protein of unknown function (DUF2892) THIMO_RS09430 PF00581 Rhodanese-like domain THIMO_RS09440 PF00795 Carbon-nitrogen hydrolase THIMO_RS09445 PF02600 Disulfide bond formation protein DsbB THIMO_RS09450 PF01464 Transglycosylase SLT domain THIMO_RS09450 PF10145 Phage-related minor tail protein THIMO_RS09450 PF01551 Peptidase family M23 THIMO_RS09455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THIMO_RS09455 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THIMO_RS09460 PF00534 Glycosyl transferases group 1 THIMO_RS09460 PF13439 Glycosyltransferase Family 4 THIMO_RS09475 PF00873 AcrB/AcrD/AcrF family THIMO_RS09480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS09500 PF04851 Type III restriction enzyme, res subunit THIMO_RS09500 PF08463 EcoEI R protein C-terminal THIMO_RS09500 PF00271 Helicase conserved C-terminal domain THIMO_RS09500 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) THIMO_RS09505 PF02384 N-6 DNA Methylase THIMO_RS09505 PF12161 HsdM N-terminal domain THIMO_RS09530 PF01420 Type I restriction modification DNA specificity domain THIMO_RS09545 PF00005 ABC transporter THIMO_RS09550 PF02492 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS09560 PF04055 Radical SAM superfamily THIMO_RS09560 PF02579 Dinitrogenase iron-molybdenum cofactor THIMO_RS09565 PF03776 Septum formation topological specificity factor MinE THIMO_RS09570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS09575 PF05209 Septum formation inhibitor MinC, N-terminal domain THIMO_RS09575 PF03775 Septum formation inhibitor MinC, C-terminal domain THIMO_RS09580 PF01230 HIT domain THIMO_RS09585 PF13662 Toprim domain THIMO_RS09585 PF02132 RecR protein THIMO_RS09590 PF02575 YbaB/EbfC DNA-binding family THIMO_RS09595 PF12170 DNA polymerase III tau subunit V interacting with alpha THIMO_RS09595 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding THIMO_RS09595 PF12169 DNA polymerase III subunits gamma and tau domain III THIMO_RS09600 PF02910 Fumarate reductase flavoprotein C-term THIMO_RS09600 PF00890 FAD binding domain THIMO_RS09605 PF12848 ABC transporter THIMO_RS09605 PF00005 ABC transporter THIMO_RS09610 PF00563 EAL domain THIMO_RS09610 PF08448 PAS fold THIMO_RS09610 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS09625 PF13401 AAA domain THIMO_RS09625 PF01471 Putative peptidoglycan binding domain THIMO_RS09630 PF13660 Domain of unknown function (DUF4147) THIMO_RS09630 PF05161 MOFRL family THIMO_RS09645 PF01594 AI-2E family transporter THIMO_RS09650 PF08448 PAS fold THIMO_RS09650 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS09650 PF00563 EAL domain THIMO_RS09655 PF07687 Peptidase dimerisation domain THIMO_RS09655 PF01546 Peptidase family M20/M25/M40 THIMO_RS09660 PF04434 SWIM zinc finger THIMO_RS09665 PF00271 Helicase conserved C-terminal domain THIMO_RS09665 PF12419 SNF2 Helicase protein THIMO_RS09665 PF00176 SNF2 family N-terminal domain THIMO_RS09680 PF01609 Transposase DDE domain THIMO_RS09680 PF05598 Transposase domain (DUF772) THIMO_RS09690 PF00155 Aminotransferase class I and II THIMO_RS09690 PF00392 Bacterial regulatory proteins, gntR family THIMO_RS09695 PF13649 Methyltransferase domain THIMO_RS09700 PF00665 Integrase core domain THIMO_RS09700 PF13276 HTH-like domain THIMO_RS09700 PF13333 Integrase core domain THIMO_RS09705 PF01527 Transposase THIMO_RS09710 PF13333 Integrase core domain THIMO_RS09710 PF00665 Integrase core domain THIMO_RS09710 PF13276 HTH-like domain THIMO_RS09720 PF13808 DDE_Tnp_1-associated THIMO_RS09720 PF01609 Transposase DDE domain THIMO_RS09725 PF01609 Transposase DDE domain THIMO_RS09725 PF13808 DDE_Tnp_1-associated THIMO_RS09740 PF04362 Bacterial Fe(2+) trafficking THIMO_RS09745 PF00633 Helix-hairpin-helix motif THIMO_RS09745 PF00730 HhH-GPD superfamily base excision DNA repair protein THIMO_RS09745 PF14815 NUDIX domain THIMO_RS09760 PF00501 AMP-binding enzyme THIMO_RS09765 PF05690 Thiazole biosynthesis protein ThiG THIMO_RS09765 PF02597 ThiS family THIMO_RS09770 PF05690 Thiazole biosynthesis protein ThiG THIMO_RS09775 PF02390 Putative methyltransferase THIMO_RS09780 PF00005 ABC transporter THIMO_RS09780 PF08402 TOBE domain THIMO_RS09785 PF03649 Uncharacterised protein family (UPF0014) THIMO_RS09790 PF01636 Phosphotransferase enzyme family THIMO_RS09805 PF00210 Ferritin-like domain THIMO_RS09810 PF00210 Ferritin-like domain THIMO_RS09835 PF13533 Biotin-lipoyl like THIMO_RS09840 PF00873 AcrB/AcrD/AcrF family THIMO_RS09845 PF13091 PLD-like domain THIMO_RS09845 PF13396 Phospholipase_D-nuclease N-terminal THIMO_RS09850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIMO_RS09850 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS09875 PF00072 Response regulator receiver domain THIMO_RS09875 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS09880 PF00672 HAMP domain THIMO_RS09880 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS09880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS09885 PF06123 Inner membrane protein CreD THIMO_RS09910 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS09915 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS09920 PF00933 Glycosyl hydrolase family 3 N terminal domain THIMO_RS09925 PF00156 Phosphoribosyl transferase domain THIMO_RS09940 PF02424 ApbE family THIMO_RS09945 PF01479 S4 domain THIMO_RS09945 PF00849 RNA pseudouridylate synthase THIMO_RS09950 PF00749 tRNA synthetases class I (E and Q), catalytic domain THIMO_RS09960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain THIMO_RS09960 PF00749 tRNA synthetases class I (E and Q), catalytic domain THIMO_RS09965 PF07497 Rho termination factor, RNA-binding domain THIMO_RS09965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS09965 PF07498 Rho termination factor, N-terminal domain THIMO_RS09970 PF00085 Thioredoxin THIMO_RS09975 PF00271 Helicase conserved C-terminal domain THIMO_RS09975 PF00270 DEAD/DEAH box helicase THIMO_RS09980 PF13419 Haloacid dehalogenase-like hydrolase THIMO_RS09985 PF00293 NUDIX domain THIMO_RS09990 PF00654 Voltage gated chloride channel THIMO_RS10000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family THIMO_RS10010 PF01176 Translation initiation factor 1A / IF-1 THIMO_RS10015 PF10431 C-terminal, D2-small domain, of ClpB protein THIMO_RS10015 PF02861 Clp amino terminal domain, pathogenicity island component THIMO_RS10015 PF17871 AAA lid domain THIMO_RS10015 PF07724 AAA domain (Cdc48 subfamily) THIMO_RS10015 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS10020 PF02617 ATP-dependent Clp protease adaptor protein ClpS THIMO_RS10025 PF00313 'Cold-shock' DNA-binding domain THIMO_RS10035 PF04356 Protein of unknown function (DUF489) THIMO_RS10045 PF00814 Glycoprotease family THIMO_RS10050 PF13307 Helicase C-terminal domain THIMO_RS10050 PF06733 DEAD_2 THIMO_RS10060 PF00912 Transglycosylase THIMO_RS10060 PF14814 Bifunctional transglycosylase second domain THIMO_RS10060 PF00905 Penicillin binding protein transpeptidase domain THIMO_RS10065 PF01061 ABC-2 type transporter THIMO_RS10070 PF00005 ABC transporter THIMO_RS10095 PF05192 MutS domain III THIMO_RS10095 PF05190 MutS family domain IV THIMO_RS10095 PF00488 MutS domain V THIMO_RS10095 PF01624 MutS domain I THIMO_RS10095 PF05188 MutS domain II THIMO_RS10100 PF08241 Methyltransferase domain THIMO_RS10100 PF12697 Alpha/beta hydrolase family THIMO_RS10105 PF00291 Pyridoxal-phosphate dependent enzyme THIMO_RS10110 PF02896 PEP-utilising enzyme, TIM barrel domain THIMO_RS10110 PF00391 PEP-utilising enzyme, mobile domain THIMO_RS10110 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THIMO_RS10125 PF00072 Response regulator receiver domain THIMO_RS10125 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS10145 PF09529 Integral membrane protein (intg_mem_TP0381) THIMO_RS10170 PF05981 CreA protein THIMO_RS10190 PF08411 Exonuclease C-terminal THIMO_RS10190 PF00929 Exonuclease THIMO_RS10195 PF01245 Ribosomal protein L19 THIMO_RS10200 PF01746 tRNA (Guanine-1)-methyltransferase THIMO_RS10205 PF05239 PRC-barrel domain THIMO_RS10205 PF01782 RimM N-terminal domain THIMO_RS10210 PF00886 Ribosomal protein S16 THIMO_RS10215 PF03448 MgtE intracellular N domain THIMO_RS10215 PF01769 Divalent cation transporter THIMO_RS10215 PF00571 CBS domain THIMO_RS10220 PF00270 DEAD/DEAH box helicase THIMO_RS10220 PF00271 Helicase conserved C-terminal domain THIMO_RS10220 PF03880 DbpA RNA binding domain THIMO_RS10225 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 THIMO_RS10230 PF01355 High potential iron-sulfur protein THIMO_RS10260 PF17760 UvrA interaction domain THIMO_RS10260 PF17755 UvrA DNA-binding domain THIMO_RS10260 PF00005 ABC transporter THIMO_RS10275 PF00672 HAMP domain THIMO_RS10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS10275 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS10275 PF00989 PAS fold THIMO_RS10280 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS10280 PF00072 Response regulator receiver domain THIMO_RS10325 PF00005 ABC transporter THIMO_RS10325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THIMO_RS10330 PF00005 ABC transporter THIMO_RS10330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THIMO_RS10340 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS10350 PF00916 Sulfate permease family THIMO_RS10350 PF01740 STAS domain THIMO_RS10355 PF00691 OmpA family THIMO_RS10360 PF02867 Ribonucleotide reductase, barrel domain THIMO_RS10360 PF00317 Ribonucleotide reductase, all-alpha domain THIMO_RS10360 PF03477 ATP cone domain THIMO_RS10370 PF00474 Sodium:solute symporter family THIMO_RS10375 PF00158 Sigma-54 interaction domain THIMO_RS10375 PF00072 Response regulator receiver domain THIMO_RS10375 PF02954 Bacterial regulatory protein, Fis family THIMO_RS10380 PF00664 ABC transporter transmembrane region THIMO_RS10380 PF00005 ABC transporter THIMO_RS10385 PF01068 ATP dependent DNA ligase domain THIMO_RS10385 PF04679 ATP dependent DNA ligase C terminal region THIMO_RS10385 PF04675 DNA ligase N terminus THIMO_RS10400 PF00266 Aminotransferase class-V THIMO_RS10405 PF00027 Cyclic nucleotide-binding domain THIMO_RS10405 PF13545 Crp-like helix-turn-helix domain THIMO_RS10410 PF01116 Fructose-bisphosphate aldolase class-II THIMO_RS10415 PF02887 Pyruvate kinase, alpha/beta domain THIMO_RS10415 PF00224 Pyruvate kinase, barrel domain THIMO_RS10420 PF00162 Phosphoglycerate kinase THIMO_RS10425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THIMO_RS10425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THIMO_RS10430 PF00456 Transketolase, thiamine diphosphate binding domain THIMO_RS10430 PF02780 Transketolase, C-terminal domain THIMO_RS10430 PF02779 Transketolase, pyrimidine binding domain THIMO_RS10440 PF00438 S-adenosylmethionine synthetase, N-terminal domain THIMO_RS10440 PF02773 S-adenosylmethionine synthetase, C-terminal domain THIMO_RS10440 PF02772 S-adenosylmethionine synthetase, central domain THIMO_RS10445 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THIMO_RS10445 PF05221 S-adenosyl-L-homocysteine hydrolase THIMO_RS10450 PF02219 Methylenetetrahydrofolate reductase THIMO_RS10455 PF04262 Glutamate-cysteine ligase THIMO_RS10460 PF17804 Tail specific protease N-terminal domain THIMO_RS10460 PF03572 Peptidase family S41 THIMO_RS10460 PF00595 PDZ domain THIMO_RS10460 PF11818 C-terminal domain of tail specific protease (DUF3340) THIMO_RS10465 PF01327 Polypeptide deformylase THIMO_RS10475 PF02578 Multi-copper polyphenol oxidoreductase laccase THIMO_RS10480 PF01479 S4 domain THIMO_RS10480 PF00849 RNA pseudouridylate synthase THIMO_RS10485 PF13525 Outer membrane lipoprotein THIMO_RS10490 PF00543 Nitrogen regulatory protein P-II THIMO_RS10495 PF00795 Carbon-nitrogen hydrolase THIMO_RS10495 PF02540 NAD synthase THIMO_RS10500 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS10505 PF00158 Sigma-54 interaction domain THIMO_RS10505 PF02954 Bacterial regulatory protein, Fis family THIMO_RS10505 PF00072 Response regulator receiver domain THIMO_RS10510 PF00696 Amino acid kinase family THIMO_RS10510 PF00583 Acetyltransferase (GNAT) family THIMO_RS10555 PF01207 Dihydrouridine synthase (Dus) THIMO_RS10575 PF07556 Protein of unknown function (DUF1538) THIMO_RS10590 PF05166 YcgL domain THIMO_RS10590 PF05116 Sucrose-6F-phosphate phosphohydrolase THIMO_RS10600 PF01883 Iron-sulfur cluster assembly protein THIMO_RS10605 PF01458 Uncharacterized protein family (UPF0051) THIMO_RS10610 PF00005 ABC transporter THIMO_RS10615 PF01458 Uncharacterized protein family (UPF0051) THIMO_RS10625 PF00266 Aminotransferase class-V THIMO_RS10635 PF02666 Phosphatidylserine decarboxylase THIMO_RS10640 PF00152 tRNA synthetases class II (D, K and N) THIMO_RS10645 PF09285 Elongation factor P, C-terminal THIMO_RS10645 PF08207 Elongation factor P (EF-P) KOW-like domain THIMO_RS10645 PF01132 Elongation factor P (EF-P) OB domain THIMO_RS10650 PF04055 Radical SAM superfamily THIMO_RS10685 PF00873 AcrB/AcrD/AcrF family THIMO_RS10700 PF00293 NUDIX domain THIMO_RS10705 PF02445 Quinolinate synthetase A protein THIMO_RS10715 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS10715 PF10518 TAT (twin-arginine translocation) pathway signal sequence THIMO_RS10715 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THIMO_RS10770 PF13276 HTH-like domain THIMO_RS10770 PF00665 Integrase core domain THIMO_RS10770 PF13333 Integrase core domain THIMO_RS10775 PF01527 Transposase THIMO_RS10785 PF17871 AAA lid domain THIMO_RS10785 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS10785 PF07724 AAA domain (Cdc48 subfamily) THIMO_RS10785 PF02861 Clp amino terminal domain, pathogenicity island component THIMO_RS10785 PF10431 C-terminal, D2-small domain, of ClpB protein THIMO_RS10810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THIMO_RS10810 PF00384 Molybdopterin oxidoreductase THIMO_RS10810 PF01568 Molydopterin dinucleotide binding domain THIMO_RS10820 PF01813 ATP synthase subunit D THIMO_RS10825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS10825 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIMO_RS10830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIMO_RS10830 PF16886 ATPsynthase alpha/beta subunit N-term extension THIMO_RS10830 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIMO_RS10890 PF13276 HTH-like domain THIMO_RS10890 PF00665 Integrase core domain THIMO_RS10890 PF13333 Integrase core domain THIMO_RS10915 PF01979 Amidohydrolase family THIMO_RS10920 PF01293 Phosphoenolpyruvate carboxykinase THIMO_RS10935 PF00106 short chain dehydrogenase THIMO_RS10940 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THIMO_RS10940 PF00355 Rieske [2Fe-2S] domain THIMO_RS10945 PF00749 tRNA synthetases class I (E and Q), catalytic domain THIMO_RS10950 PF01258 Prokaryotic dksA/traR C4-type zinc finger THIMO_RS10955 PF07733 Bacterial DNA polymerase III alpha NTPase domain THIMO_RS10955 PF01336 OB-fold nucleic acid binding domain THIMO_RS10955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THIMO_RS10955 PF14579 Helix-hairpin-helix motif THIMO_RS10955 PF02811 PHP domain THIMO_RS10970 PF00072 Response regulator receiver domain THIMO_RS10990 PF00478 IMP dehydrogenase / GMP reductase domain THIMO_RS10990 PF00571 CBS domain THIMO_RS11010 PF03692 Putative zinc- or iron-chelating domain THIMO_RS11025 PF00069 Protein kinase domain THIMO_RS11025 PF03793 PASTA domain THIMO_RS11055 PF13538 UvrD-like helicase C-terminal domain THIMO_RS11060 PF12705 PD-(D/E)XK nuclease superfamily THIMO_RS11060 PF13361 UvrD-like helicase C-terminal domain THIMO_RS11060 PF00580 UvrD/REP helicase N-terminal domain THIMO_RS11065 PF17946 RecC C-terminal domain THIMO_RS11075 PF04364 DNA polymerase III chi subunit, HolC THIMO_RS11080 PF00883 Cytosol aminopeptidase family, catalytic domain THIMO_RS11080 PF02789 Cytosol aminopeptidase family, N-terminal domain THIMO_RS11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS11095 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS11095 PF00989 PAS fold THIMO_RS11100 PF00072 Response regulator receiver domain THIMO_RS11100 PF00196 Bacterial regulatory proteins, luxR family THIMO_RS11110 PF13718 GNAT acetyltransferase 2 THIMO_RS11110 PF05127 Helicase THIMO_RS11110 PF17176 tRNA-binding domain THIMO_RS11110 PF08351 Domain of unknown function (DUF1726) THIMO_RS11120 PF01027 Inhibitor of apoptosis-promoting Bax1 THIMO_RS11130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THIMO_RS11130 PF02403 Seryl-tRNA synthetase N-terminal domain THIMO_RS11135 PF08032 RNA 2'-O ribose methyltransferase substrate binding THIMO_RS11135 PF00588 SpoU rRNA Methylase family THIMO_RS11140 PF08206 Ribonuclease B OB domain THIMO_RS11140 PF00575 S1 RNA binding domain THIMO_RS11140 PF08461 Ribonuclease R winged-helix domain THIMO_RS11140 PF17876 Cold shock domain THIMO_RS11140 PF00773 RNB domain THIMO_RS11150 PF00672 HAMP domain THIMO_RS11150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS11150 PF07730 Histidine kinase THIMO_RS11150 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term THIMO_RS11155 PF00072 Response regulator receiver domain THIMO_RS11155 PF00196 Bacterial regulatory proteins, luxR family THIMO_RS11160 PF00899 ThiF family THIMO_RS11160 PF00581 Rhodanese-like domain THIMO_RS11175 PF13344 Haloacid dehalogenase-like hydrolase THIMO_RS11180 PF04168 A predicted alpha-helical domain with a conserved ER motif. THIMO_RS11180 PF14403 Circularly permuted ATP-grasp type 2 THIMO_RS11185 PF01841 Transglutaminase-like superfamily THIMO_RS11185 PF08379 Bacterial transglutaminase-like N-terminal region THIMO_RS11195 PF11941 Domain of unknown function (DUF3459) THIMO_RS11195 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THIMO_RS11195 PF00128 Alpha amylase, catalytic domain THIMO_RS11200 PF00085 Thioredoxin THIMO_RS11205 PF00085 Thioredoxin THIMO_RS11215 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THIMO_RS11220 PF00472 RF-1 domain THIMO_RS11225 PF01066 CDP-alcohol phosphatidyltransferase THIMO_RS11235 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIMO_RS11235 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THIMO_RS11235 PF00037 4Fe-4S binding domain THIMO_RS11240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THIMO_RS11250 PF00374 Nickel-dependent hydrogenase THIMO_RS11270 PF02586 SOS response associated peptidase (SRAP) THIMO_RS11280 PF00672 HAMP domain THIMO_RS11280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS11280 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS11285 PF00072 Response regulator receiver domain THIMO_RS11285 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS11295 PF00817 impB/mucB/samB family THIMO_RS11295 PF11799 impB/mucB/samB family C-terminal domain THIMO_RS11305 PF03461 TRCF domain THIMO_RS11305 PF02559 CarD-like/TRCF domain THIMO_RS11305 PF17757 UvrB interaction domain THIMO_RS11305 PF00271 Helicase conserved C-terminal domain THIMO_RS11305 PF00270 DEAD/DEAH box helicase THIMO_RS11315 PF00581 Rhodanese-like domain THIMO_RS11325 PF00075 RNase H THIMO_RS11330 PF08241 Methyltransferase domain THIMO_RS11335 PF00920 Dehydratase family THIMO_RS11340 PF01026 TatD related DNase THIMO_RS11350 PF09115 DNA polymerase III, delta subunit, C terminal THIMO_RS11355 PF02223 Thymidylate kinase THIMO_RS11360 PF02618 YceG-like family THIMO_RS11365 PF01063 Amino-transferase class IV THIMO_RS11370 PF00109 Beta-ketoacyl synthase, N-terminal domain THIMO_RS11370 PF02801 Beta-ketoacyl synthase, C-terminal domain THIMO_RS11375 PF00550 Phosphopantetheine attachment site THIMO_RS11385 PF00698 Acyl transferase domain THIMO_RS11390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal THIMO_RS11390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III THIMO_RS11395 PF02504 Fatty acid synthesis protein THIMO_RS11400 PF01783 Ribosomal L32p protein family THIMO_RS11405 PF02620 Large ribosomal RNA subunit accumulation protein YceD THIMO_RS11410 PF00709 Adenylosuccinate synthetase THIMO_RS11415 PF13393 Histidyl-tRNA synthetase THIMO_RS11425 PF01145 SPFH domain / Band 7 family THIMO_RS11430 PF12221 Bacterial membrane protein N terminal THIMO_RS11430 PF01145 SPFH domain / Band 7 family THIMO_RS11435 PF13167 GTP-binding GTPase N-terminal THIMO_RS11435 PF16360 GTP-binding GTPase Middle Region THIMO_RS11435 PF01926 50S ribosome-binding GTPase THIMO_RS11440 PF17209 Hfq protein THIMO_RS11450 PF01119 DNA mismatch repair protein, C-terminal domain THIMO_RS11450 PF08676 MutL C terminal dimerisation domain THIMO_RS11465 PF18074 Primosomal protein N C-terminal domain THIMO_RS11465 PF00271 Helicase conserved C-terminal domain THIMO_RS11465 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THIMO_RS11465 PF00270 DEAD/DEAH box helicase THIMO_RS11465 PF17764 3′ DNA-binding domain (3′BD) THIMO_RS11475 PF03881 Fructosamine kinase THIMO_RS11490 PF03334 Na+/H+ antiporter subunit THIMO_RS11500 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THIMO_RS11505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THIMO_RS11510 PF00361 Proton-conducting membrane transporter THIMO_RS11515 PF00361 Proton-conducting membrane transporter THIMO_RS11525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS11530 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THIMO_RS11530 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THIMO_RS11535 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THIMO_RS11545 PF01899 Na+/H+ ion antiporter subunit THIMO_RS11555 PF13514 AAA domain THIMO_RS11560 PF00149 Calcineurin-like phosphoesterase THIMO_RS11590 PF00266 Aminotransferase class-V THIMO_RS11600 PF02599 Global regulator protein family THIMO_RS11605 PF13840 ACT domain THIMO_RS11605 PF00696 Amino acid kinase family THIMO_RS11605 PF01842 ACT domain THIMO_RS11610 PF01411 tRNA synthetases class II (A) THIMO_RS11610 PF02272 DHHA1 domain THIMO_RS11610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THIMO_RS11615 PF02631 RecX family THIMO_RS11620 PF00154 recA bacterial DNA recombination protein THIMO_RS11625 PF02834 LigT like Phosphoesterase THIMO_RS11630 PF02464 Competence-damaged protein THIMO_RS11640 PF00175 Oxidoreductase NAD-binding domain THIMO_RS11640 PF00111 2Fe-2S iron-sulfur cluster binding domain THIMO_RS11640 PF00970 Oxidoreductase FAD-binding domain THIMO_RS11645 PF01738 Dienelactone hydrolase family THIMO_RS11650 PF00875 DNA photolyase THIMO_RS11650 PF03441 FAD binding domain of DNA photolyase THIMO_RS11655 PF01980 tRNA-methyltransferase O THIMO_RS11655 PF18389 TrmO C-terminal domain THIMO_RS11660 PF01750 Hydrogenase maturation protease THIMO_RS11665 PF00374 Nickel-dependent hydrogenase THIMO_RS11675 PF04073 Aminoacyl-tRNA editing domain THIMO_RS11685 PF12002 MgsA AAA+ ATPase C terminal THIMO_RS11685 PF16193 AAA C-terminal domain THIMO_RS11685 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS11690 PF03548 Outer membrane lipoprotein carrier protein LolA THIMO_RS11695 PF01580 FtsK/SpoIIIE family THIMO_RS11695 PF17854 FtsK alpha domain THIMO_RS11695 PF13491 4TM region of DNA translocase FtsK/SpoIIIE THIMO_RS11695 PF09397 Ftsk gamma domain THIMO_RS11700 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS11710 PF03588 Leucyl/phenylalanyl-tRNA protein transferase THIMO_RS11715 PF04376 Arginine-tRNA-protein transferase, N terminus THIMO_RS11715 PF04377 Arginine-tRNA-protein transferase, C terminus THIMO_RS11720 PF01790 Prolipoprotein diacylglyceryl transferase THIMO_RS11725 PF02769 AIR synthase related protein, C-terminal domain THIMO_RS11725 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THIMO_RS11725 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal THIMO_RS11750 PF08281 Sigma-70, region 4 THIMO_RS11750 PF04542 Sigma-70 region 2 THIMO_RS11770 PF04055 Radical SAM superfamily THIMO_RS11770 PF18693 TRAM domain THIMO_RS11770 PF00919 Uncharacterized protein family UPF0004 THIMO_RS11775 PF01339 CheB methylesterase THIMO_RS11775 PF08448 PAS fold THIMO_RS11775 PF03705 CheR methyltransferase, all-alpha domain THIMO_RS11775 PF01739 CheR methyltransferase, SAM binding domain THIMO_RS11780 PF01548 Transposase THIMO_RS11780 PF02371 Transposase IS116/IS110/IS902 family THIMO_RS11790 PF13426 PAS domain THIMO_RS11790 PF00072 Response regulator receiver domain THIMO_RS11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS11790 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS11790 PF08448 PAS fold THIMO_RS11795 PF00196 Bacterial regulatory proteins, luxR family THIMO_RS11795 PF00072 Response regulator receiver domain THIMO_RS11800 PF00924 Mechanosensitive ion channel THIMO_RS11800 PF05552 Conserved TM helix THIMO_RS11810 PF13542 Helix-turn-helix domain of transposase family ISL3 THIMO_RS11810 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 THIMO_RS11810 PF01610 Transposase THIMO_RS11815 PF10011 Predicted membrane protein (DUF2254) THIMO_RS11835 PF01594 AI-2E family transporter THIMO_RS11880 PF04972 BON domain THIMO_RS11905 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain THIMO_RS11905 PF06165 Glycosyltransferase family 36 THIMO_RS11905 PF10091 Putative glucoamylase THIMO_RS11910 PF08448 PAS fold THIMO_RS11910 PF03705 CheR methyltransferase, all-alpha domain THIMO_RS11910 PF01339 CheB methylesterase THIMO_RS11910 PF01739 CheR methyltransferase, SAM binding domain THIMO_RS11915 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS11915 PF00563 EAL domain THIMO_RS11915 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS11920 PF02401 LytB protein THIMO_RS11925 PF01266 FAD dependent oxidoreductase THIMO_RS11950 PF02472 Biopolymer transport protein ExbD/TolR THIMO_RS11955 PF01618 MotA/TolQ/ExbB proton channel family THIMO_RS11960 PF07715 TonB-dependent Receptor Plug Domain THIMO_RS11960 PF00593 TonB dependent receptor THIMO_RS11965 PF07683 Cobalamin synthesis protein cobW C-terminal domain THIMO_RS11965 PF02492 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS11990 PF00005 ABC transporter THIMO_RS12000 PF01475 Ferric uptake regulator family THIMO_RS12005 PF00950 ABC 3 transport family THIMO_RS12010 PF00005 ABC transporter THIMO_RS12015 PF01297 Zinc-uptake complex component A periplasmic THIMO_RS12020 PF01258 Prokaryotic dksA/traR C4-type zinc finger THIMO_RS12030 PF07683 Cobalamin synthesis protein cobW C-terminal domain THIMO_RS12030 PF02492 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS12050 PF12704 MacB-like periplasmic core domain THIMO_RS12050 PF02687 FtsX-like permease family THIMO_RS12060 PF00005 ABC transporter THIMO_RS12080 PF01895 PhoU domain THIMO_RS12085 PF00005 ABC transporter THIMO_RS12090 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS12095 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS12110 PF00571 CBS domain THIMO_RS12110 PF01769 Divalent cation transporter THIMO_RS12110 PF03448 MgtE intracellular N domain THIMO_RS12115 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component THIMO_RS12120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component THIMO_RS12125 PF03480 Bacterial extracellular solute-binding protein, family 7 THIMO_RS12130 PF05173 Dihydrodipicolinate reductase, C-terminus THIMO_RS12130 PF01113 Dihydrodipicolinate reductase, N-terminus THIMO_RS12135 PF00684 DnaJ central domain THIMO_RS12135 PF01556 DnaJ C terminal domain THIMO_RS12135 PF00226 DnaJ domain THIMO_RS12140 PF00012 Hsp70 protein THIMO_RS12145 PF01025 GrpE THIMO_RS12150 PF01628 HrcA protein C terminal domain THIMO_RS12150 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding THIMO_RS12155 PF01513 ATP-NAD kinase THIMO_RS12160 PF02463 RecF/RecN/SMC N terminal domain THIMO_RS12165 PF01475 Ferric uptake regulator family THIMO_RS12170 PF04355 SmpA / OmlA family THIMO_RS12175 PF03658 RnfH family Ubiquitin THIMO_RS12180 PF03364 Polyketide cyclase / dehydrase and lipid transport THIMO_RS12185 PF00209 Sodium:neurotransmitter symporter family THIMO_RS12190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIMO_RS12190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIMO_RS12190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIMO_RS12190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIMO_RS12195 PF00809 Pterin binding enzyme THIMO_RS12200 PF06480 FtsH Extracellular THIMO_RS12200 PF17862 AAA+ lid domain THIMO_RS12200 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS12200 PF01434 Peptidase family M41 THIMO_RS12205 PF01728 FtsJ-like methyltransferase THIMO_RS12210 PF02951 Prokaryotic glutathione synthetase, N-terminal domain THIMO_RS12210 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain THIMO_RS12220 PF03544 Gram-negative bacterial TonB protein C-terminal THIMO_RS12225 PF02622 Uncharacterized ACR, COG1678 THIMO_RS12230 PF03652 Holliday junction resolvase THIMO_RS12235 PF00156 Phosphoribosyl transferase domain THIMO_RS12240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THIMO_RS12240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THIMO_RS12245 PF01979 Amidohydrolase family THIMO_RS12250 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B THIMO_RS12250 PF00175 Oxidoreductase NAD-binding domain THIMO_RS12275 PF17944 Arginine decarboxylase C-terminal helical extension THIMO_RS12275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THIMO_RS12275 PF17810 Arginine decarboxylase helical bundle domain THIMO_RS12280 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA THIMO_RS12285 PF02492 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS12305 PF01722 BolA-like protein THIMO_RS12310 PF13495 Phage integrase, N-terminal SAM-like domain THIMO_RS12310 PF00589 Phage integrase family THIMO_RS12335 PF16658 Class II release factor RF3, C-terminal domain THIMO_RS12335 PF00009 Elongation factor Tu GTP binding domain THIMO_RS12350 PF16326 ABC transporter C-terminal domain THIMO_RS12350 PF12848 ABC transporter THIMO_RS12350 PF00005 ABC transporter THIMO_RS12360 PF00005 ABC transporter THIMO_RS12360 PF17760 UvrA interaction domain THIMO_RS12360 PF17755 UvrA DNA-binding domain THIMO_RS12365 PF02913 FAD linked oxidases, C-terminal domain THIMO_RS12365 PF01565 FAD binding domain THIMO_RS12380 PF00034 Cytochrome c THIMO_RS12385 PF00171 Aldehyde dehydrogenase family THIMO_RS12395 PF12833 Helix-turn-helix domain THIMO_RS12395 PF14525 AraC-binding-like domain THIMO_RS12400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THIMO_RS12400 PF01612 3'-5' exonuclease THIMO_RS12400 PF01367 5'-3' exonuclease, C-terminal SAM fold THIMO_RS12400 PF00476 DNA polymerase family A THIMO_RS12405 PF00196 Bacterial regulatory proteins, luxR family THIMO_RS12405 PF00072 Response regulator receiver domain THIMO_RS12420 PF01609 Transposase DDE domain THIMO_RS12420 PF13808 DDE_Tnp_1-associated THIMO_RS12425 PF02590 Predicted SPOUT methyltransferase THIMO_RS12430 PF02545 Maf-like protein THIMO_RS12435 PF00575 S1 RNA binding domain THIMO_RS12435 PF10150 Ribonuclease E/G family THIMO_RS12450 PF00795 Carbon-nitrogen hydrolase THIMO_RS12455 PF01523 Putative modulator of DNA gyrase THIMO_RS12460 PF01523 Putative modulator of DNA gyrase THIMO_RS12470 PF02915 Rubrerythrin THIMO_RS12475 PF01661 Macro domain THIMO_RS12480 PF01322 Cytochrome C' THIMO_RS12500 PF00294 pfkB family carbohydrate kinase THIMO_RS12515 PF01066 CDP-alcohol phosphatidyltransferase THIMO_RS12520 PF01541 GIY-YIG catalytic domain THIMO_RS12520 PF02151 UvrB/uvrC motif THIMO_RS12520 PF08459 UvrC Helix-hairpin-helix N-terminal THIMO_RS12525 PF00196 Bacterial regulatory proteins, luxR family THIMO_RS12525 PF00072 Response regulator receiver domain THIMO_RS12535 PF00665 Integrase core domain THIMO_RS12535 PF08281 Sigma-70, region 4 THIMO_RS12565 PF00692 dUTPase THIMO_RS12570 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain THIMO_RS12585 PF01594 AI-2E family transporter THIMO_RS12595 PF03466 LysR substrate binding domain THIMO_RS12595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS12605 PF13686 DsrE/DsrF/DrsH-like family THIMO_RS12610 PF01206 Sulfurtransferase TusA THIMO_RS12615 PF00581 Rhodanese-like domain THIMO_RS12620 PF10414 Sirohaem synthase dimerisation region THIMO_RS12620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS12620 PF14824 Sirohaem biosynthesis protein central THIMO_RS12625 PF02673 Bacitracin resistance protein BacA THIMO_RS12630 PF01053 Cys/Met metabolism PLP-dependent enzyme THIMO_RS12635 PF00156 Phosphoribosyl transferase domain THIMO_RS12640 PF02674 Colicin V production protein THIMO_RS12650 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS12650 PF08245 Mur ligase middle domain THIMO_RS12655 PF01039 Carboxyl transferase domain THIMO_RS12655 PF17848 Acetyl-coA carboxylase zinc finger domain THIMO_RS12660 PF00290 Tryptophan synthase alpha chain THIMO_RS12665 PF00291 Pyridoxal-phosphate dependent enzyme THIMO_RS12670 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase THIMO_RS12675 PF01416 tRNA pseudouridine synthase THIMO_RS12685 PF01118 Semialdehyde dehydrogenase, NAD binding domain THIMO_RS12685 PF02774 Semialdehyde dehydrogenase, dimerisation domain THIMO_RS12690 PF00180 Isocitrate/isopropylmalate dehydrogenase THIMO_RS12695 PF00694 Aconitase C-terminal domain THIMO_RS12700 PF00330 Aconitase family (aconitate hydratase) THIMO_RS12705 PF01649 Ribosomal protein S20 THIMO_RS12730 PF13614 AAA domain THIMO_RS12755 PF13333 Integrase core domain THIMO_RS12755 PF00665 Integrase core domain THIMO_RS12755 PF13276 HTH-like domain THIMO_RS12770 PF00953 Glycosyl transferase family 4 THIMO_RS12775 PF03972 MmgE/PrpD family THIMO_RS12780 PF00285 Citrate synthase, C-terminal domain THIMO_RS12790 PF00392 Bacterial regulatory proteins, gntR family THIMO_RS12790 PF07729 FCD domain THIMO_RS12795 PF00501 AMP-binding enzyme THIMO_RS12795 PF13193 AMP-binding enzyme C-terminal domain THIMO_RS12795 PF16177 Acetyl-coenzyme A synthetase N-terminus THIMO_RS12820 PF16330 MukB hinge domain THIMO_RS12820 PF04310 MukB N-terminal THIMO_RS12850 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS12850 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS12850 PF00563 EAL domain THIMO_RS12860 PF14718 Soluble lytic murein transglycosylase L domain THIMO_RS12860 PF01464 Transglycosylase SLT domain THIMO_RS12875 PF01841 Transglutaminase-like superfamily THIMO_RS12875 PF13559 Domain of unknown function (DUF4129) THIMO_RS12875 PF11992 Domain of unknown function (DUF3488) THIMO_RS12885 PF00128 Alpha amylase, catalytic domain THIMO_RS12890 PF01844 HNH endonuclease THIMO_RS12895 PF03150 Di-haem cytochrome c peroxidase THIMO_RS12895 PF00034 Cytochrome c THIMO_RS12905 PF02885 Glycosyl transferase family, helical bundle domain THIMO_RS12905 PF00591 Glycosyl transferase family, a/b domain THIMO_RS12910 PF00355 Rieske [2Fe-2S] domain THIMO_RS12935 PF00266 Aminotransferase class-V THIMO_RS12950 PF13476 AAA domain THIMO_RS12965 PF13476 AAA domain THIMO_RS12985 PF04851 Type III restriction enzyme, res subunit THIMO_RS12985 PF00271 Helicase conserved C-terminal domain THIMO_RS12985 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) THIMO_RS12985 PF08463 EcoEI R protein C-terminal THIMO_RS13035 PF04011 LemA family THIMO_RS13045 PF05496 Holliday junction DNA helicase RuvB P-loop domain THIMO_RS13045 PF05491 RuvB C-terminal winged helix domain THIMO_RS13045 PF17864 RuvB AAA lid domain THIMO_RS13055 PF01758 Sodium Bile acid symporter family THIMO_RS13060 PF01053 Cys/Met metabolism PLP-dependent enzyme THIMO_RS13065 PF01370 NAD dependent epimerase/dehydratase family THIMO_RS13080 PF02527 rRNA small subunit methyltransferase G THIMO_RS13095 PF00155 Aminotransferase class I and II THIMO_RS13100 PF00815 Histidinol dehydrogenase THIMO_RS13105 PF01634 ATP phosphoribosyltransferase THIMO_RS13110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THIMO_RS13125 PF02470 MlaD protein THIMO_RS13130 PF02405 Permease MlaE THIMO_RS13135 PF00005 ABC transporter THIMO_RS13140 PF01380 SIS domain THIMO_RS13140 PF00571 CBS domain THIMO_RS13160 PF00005 ABC transporter THIMO_RS13160 PF12399 Branched-chain amino acid ATP-binding cassette transporter THIMO_RS13165 PF00309 Sigma-54 factor, Activator interacting domain (AID) THIMO_RS13165 PF04552 Sigma-54, DNA binding domain THIMO_RS13165 PF04963 Sigma-54 factor, core binding domain THIMO_RS13170 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THIMO_RS13175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 THIMO_RS13180 PF03668 P-loop ATPase protein family THIMO_RS13190 PF00381 PTS HPr component phosphorylation site THIMO_RS13195 PF05524 PEP-utilising enzyme, N-terminal THIMO_RS13195 PF02896 PEP-utilising enzyme, TIM barrel domain THIMO_RS13195 PF00391 PEP-utilising enzyme, mobile domain THIMO_RS13200 PF13426 PAS domain THIMO_RS13200 PF02954 Bacterial regulatory protein, Fis family THIMO_RS13200 PF13188 PAS domain THIMO_RS13205 PF02514 CobN/Magnesium Chelatase THIMO_RS13205 PF11965 Domain of unknown function (DUF3479) THIMO_RS13210 PF05239 PRC-barrel domain THIMO_RS13210 PF03967 Photosynthetic reaction centre, H-chain N-terminal region THIMO_RS13215 PF02036 SCP-2 sterol transfer family THIMO_RS13220 PF03099 Biotin/lipoate A/B protein ligase family THIMO_RS13225 PF07943 Penicillin-binding protein 5, C-terminal domain THIMO_RS13225 PF00768 D-alanyl-D-alanine carboxypeptidase THIMO_RS13230 PF03330 Lytic transglycolase THIMO_RS13230 PF05036 Sporulation related domain THIMO_RS13235 PF13406 Transglycosylase SLT domain THIMO_RS13240 PF01098 Cell cycle protein THIMO_RS13245 PF00905 Penicillin binding protein transpeptidase domain THIMO_RS13245 PF03717 Penicillin-binding Protein dimerisation domain THIMO_RS13250 PF04093 rod shape-determining protein MreD THIMO_RS13255 PF04085 rod shape-determining protein MreC THIMO_RS13265 PF02686 Glu-tRNAGln amidotransferase C subunit THIMO_RS13270 PF01425 Amidase THIMO_RS13275 PF02637 GatB domain THIMO_RS13275 PF02934 GatB/GatE catalytic domain THIMO_RS13280 PF06969 HemN C-terminal domain THIMO_RS13280 PF04055 Radical SAM superfamily THIMO_RS13285 PF02830 V4R domain THIMO_RS13295 PF18030 RimK PreATP-grasp domain THIMO_RS13295 PF08443 RimK-like ATP-grasp domain THIMO_RS13295 PF02080 TrkA-C domain THIMO_RS13305 PF07687 Peptidase dimerisation domain THIMO_RS13305 PF01546 Peptidase family M20/M25/M40 THIMO_RS13310 PF00009 Elongation factor Tu GTP binding domain THIMO_RS13310 PF03764 Elongation factor G, domain IV THIMO_RS13310 PF03144 Elongation factor Tu domain 2 THIMO_RS13310 PF00679 Elongation factor G C-terminus THIMO_RS13310 PF14492 Elongation Factor G, domain II THIMO_RS13330 PF01618 MotA/TolQ/ExbB proton channel family THIMO_RS13355 PF01032 FecCD transport family THIMO_RS13365 PF00005 ABC transporter THIMO_RS13370 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THIMO_RS13375 PF00034 Cytochrome c THIMO_RS13380 PF00034 Cytochrome c THIMO_RS13390 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) THIMO_RS13400 PF08753 NikR C terminal nickel binding domain THIMO_RS13400 PF01402 Ribbon-helix-helix protein, copG family THIMO_RS13415 PF01739 CheR methyltransferase, SAM binding domain THIMO_RS13415 PF01339 CheB methylesterase THIMO_RS13415 PF03705 CheR methyltransferase, all-alpha domain THIMO_RS13415 PF08448 PAS fold THIMO_RS13420 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS13425 PF13411 MerR HTH family regulatory protein THIMO_RS13425 PF02607 B12 binding domain THIMO_RS13425 PF02310 B12 binding domain THIMO_RS13430 PF00691 OmpA family THIMO_RS13430 PF00223 Photosystem I psaA/psaB protein THIMO_RS13435 PF00664 ABC transporter transmembrane region THIMO_RS13435 PF00005 ABC transporter THIMO_RS13440 PF13411 MerR HTH family regulatory protein THIMO_RS13445 PF00216 Bacterial DNA-binding protein THIMO_RS13450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THIMO_RS13450 PF03147 Ferredoxin-fold anticodon binding domain THIMO_RS13450 PF03484 tRNA synthetase B5 domain THIMO_RS13450 PF03483 B3/4 domain THIMO_RS13450 PF01588 Putative tRNA binding domain THIMO_RS13455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THIMO_RS13455 PF01409 tRNA synthetases class II core domain (F) THIMO_RS13460 PF00453 Ribosomal protein L20 THIMO_RS13465 PF01632 Ribosomal protein L35 THIMO_RS13470 PF05198 Translation initiation factor IF-3, N-terminal domain THIMO_RS13470 PF00707 Translation initiation factor IF-3, C-terminal domain THIMO_RS13475 PF03129 Anticodon binding domain THIMO_RS13475 PF02824 TGS domain THIMO_RS13475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THIMO_RS13475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THIMO_RS13485 PF05681 Fumarate hydratase (Fumerase) THIMO_RS13485 PF05683 Fumarase C-terminus THIMO_RS13490 PF00107 Zinc-binding dehydrogenase THIMO_RS13490 PF08240 Alcohol dehydrogenase GroES-like domain THIMO_RS13500 PF01196 Ribosomal protein L17 THIMO_RS13505 PF01000 RNA polymerase Rpb3/RpoA insert domain THIMO_RS13505 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THIMO_RS13505 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THIMO_RS13510 PF00163 Ribosomal protein S4/S9 N-terminal domain THIMO_RS13510 PF01479 S4 domain THIMO_RS13515 PF00411 Ribosomal protein S11 THIMO_RS13520 PF00416 Ribosomal protein S13/S18 THIMO_RS13525 PF00444 Ribosomal protein L36 THIMO_RS13530 PF00344 SecY translocase THIMO_RS13535 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THIMO_RS13540 PF00327 Ribosomal protein L30p/L7e THIMO_RS13545 PF00333 Ribosomal protein S5, N-terminal domain THIMO_RS13545 PF03719 Ribosomal protein S5, C-terminal domain THIMO_RS13550 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THIMO_RS13555 PF00347 Ribosomal protein L6 THIMO_RS13560 PF00410 Ribosomal protein S8 THIMO_RS13565 PF00253 Ribosomal protein S14p/S29e THIMO_RS13570 PF00281 Ribosomal protein L5 THIMO_RS13570 PF00673 ribosomal L5P family C-terminus THIMO_RS13575 PF00467 KOW motif THIMO_RS13575 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THIMO_RS13580 PF00238 Ribosomal protein L14p/L23e THIMO_RS13585 PF00366 Ribosomal protein S17 THIMO_RS13590 PF00831 Ribosomal L29 protein THIMO_RS13595 PF00252 Ribosomal protein L16p/L10e THIMO_RS13600 PF07650 KH domain THIMO_RS13600 PF00189 Ribosomal protein S3, C-terminal domain THIMO_RS13605 PF00237 Ribosomal protein L22p/L17e THIMO_RS13610 PF00203 Ribosomal protein S19 THIMO_RS13615 PF03947 Ribosomal Proteins L2, C-terminal domain THIMO_RS13615 PF00181 Ribosomal Proteins L2, RNA binding domain THIMO_RS13620 PF00276 Ribosomal protein L23 THIMO_RS13625 PF00573 Ribosomal protein L4/L1 family THIMO_RS13630 PF00297 Ribosomal protein L3 THIMO_RS13635 PF00338 Ribosomal protein S10p/S20e THIMO_RS13640 PF03143 Elongation factor Tu C-terminal domain THIMO_RS13640 PF00009 Elongation factor Tu GTP binding domain THIMO_RS13640 PF03144 Elongation factor Tu domain 2 THIMO_RS13645 PF03144 Elongation factor Tu domain 2 THIMO_RS13645 PF00009 Elongation factor Tu GTP binding domain THIMO_RS13645 PF03764 Elongation factor G, domain IV THIMO_RS13645 PF14492 Elongation Factor G, domain II THIMO_RS13645 PF00679 Elongation factor G C-terminus THIMO_RS13650 PF00177 Ribosomal protein S7p/S5e THIMO_RS13655 PF00164 Ribosomal protein S12/S23 THIMO_RS13660 PF00623 RNA polymerase Rpb1, domain 2 THIMO_RS13660 PF04998 RNA polymerase Rpb1, domain 5 THIMO_RS13660 PF05000 RNA polymerase Rpb1, domain 4 THIMO_RS13660 PF04997 RNA polymerase Rpb1, domain 1 THIMO_RS13660 PF04983 RNA polymerase Rpb1, domain 3 THIMO_RS13665 PF04561 RNA polymerase Rpb2, domain 2 THIMO_RS13665 PF04565 RNA polymerase Rpb2, domain 3 THIMO_RS13665 PF10385 RNA polymerase beta subunit external 1 domain THIMO_RS13665 PF04563 RNA polymerase beta subunit THIMO_RS13665 PF00562 RNA polymerase Rpb2, domain 6 THIMO_RS13665 PF04560 RNA polymerase Rpb2, domain 7 THIMO_RS13670 PF00542 Ribosomal protein L7/L12 C-terminal domain THIMO_RS13670 PF16320 Ribosomal protein L7/L12 dimerisation domain THIMO_RS13675 PF00466 Ribosomal protein L10 THIMO_RS13680 PF00687 Ribosomal protein L1p/L10e family THIMO_RS13685 PF00298 Ribosomal protein L11, RNA binding domain THIMO_RS13685 PF03946 Ribosomal protein L11, N-terminal domain THIMO_RS13690 PF02357 Transcription termination factor nusG THIMO_RS13690 PF00467 KOW motif THIMO_RS13695 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THIMO_RS13705 PF00009 Elongation factor Tu GTP binding domain THIMO_RS13705 PF03144 Elongation factor Tu domain 2 THIMO_RS13705 PF03143 Elongation factor Tu C-terminal domain THIMO_RS13725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THIMO_RS13725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THIMO_RS13725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THIMO_RS13755 PF00400 WD domain, G-beta repeat THIMO_RS13755 PF12894 Anaphase-promoting complex subunit 4 WD40 domain THIMO_RS13760 PF00398 Ribosomal RNA adenine dimethylase THIMO_RS13765 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS13765 PF05362 Lon protease (S16) C-terminal proteolytic domain THIMO_RS13765 PF02190 ATP-dependent protease La (LON) substrate-binding domain THIMO_RS13770 PF00258 Flavodoxin THIMO_RS13770 PF01613 Flavin reductase like domain THIMO_RS13775 PF02887 Pyruvate kinase, alpha/beta domain THIMO_RS13775 PF00391 PEP-utilising enzyme, mobile domain THIMO_RS13775 PF00224 Pyruvate kinase, barrel domain THIMO_RS13780 PF00561 alpha/beta hydrolase fold THIMO_RS13810 PF00403 Heavy-metal-associated domain THIMO_RS13820 PF01797 Transposase IS200 like THIMO_RS13830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region THIMO_RS13830 PF01243 Pyridoxamine 5'-phosphate oxidase THIMO_RS13840 PF00912 Transglycosylase THIMO_RS13875 PF13090 Polyphosphate kinase C-terminal domain 2 THIMO_RS13875 PF17941 Polyphosphate kinase C-terminal domain 1 THIMO_RS13875 PF13089 Polyphosphate kinase N-terminal domain THIMO_RS13875 PF02503 Polyphosphate kinase middle domain THIMO_RS13880 PF04337 Protein of unknown function, DUF480 THIMO_RS13885 PF02698 DUF218 domain THIMO_RS13900 PF00497 Bacterial extracellular solute-binding proteins, family 3 THIMO_RS13900 PF01464 Transglycosylase SLT domain THIMO_RS13940 PF00092 von Willebrand factor type A domain THIMO_RS13940 PF07584 Aerotolerance regulator N-terminal THIMO_RS13960 PF07726 ATPase family associated with various cellular activities (AAA) THIMO_RS13960 PF17863 AAA lid domain THIMO_RS13970 PF02028 BCCT, betaine/carnitine/choline family transporter THIMO_RS13985 PF13488 Glycine zipper THIMO_RS13985 PF00691 OmpA family THIMO_RS14000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS14000 PF03466 LysR substrate binding domain THIMO_RS14005 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THIMO_RS14005 PF00361 Proton-conducting membrane transporter THIMO_RS14010 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) THIMO_RS14015 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THIMO_RS14015 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THIMO_RS14020 PF00101 Ribulose bisphosphate carboxylase, small chain THIMO_RS14045 PF00936 BMC domain THIMO_RS14050 PF00936 BMC domain THIMO_RS14070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS14070 PF03466 LysR substrate binding domain THIMO_RS14090 PF00664 ABC transporter transmembrane region THIMO_RS14090 PF00005 ABC transporter THIMO_RS14100 PF06804 NlpB/DapX lipoprotein THIMO_RS14105 PF00701 Dihydrodipicolinate synthetase family THIMO_RS14110 PF01842 ACT domain THIMO_RS14115 PF00578 AhpC/TSA family THIMO_RS14120 PF13638 PIN domain THIMO_RS14120 PF02562 PhoH-like protein THIMO_RS14125 PF01323 DSBA-like thioredoxin domain THIMO_RS14125 PF00085 Thioredoxin THIMO_RS14130 PF01242 6-pyruvoyl tetrahydropterin synthase THIMO_RS14135 PF06508 Queuosine biosynthesis protein QueC THIMO_RS14140 PF04321 RmlD substrate binding domain THIMO_RS14145 PF00436 Single-strand binding protein family THIMO_RS14150 PF07690 Major Facilitator Superfamily THIMO_RS14185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family THIMO_RS14185 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIMO_RS14195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THIMO_RS14195 PF00005 ABC transporter THIMO_RS14205 PF00556 Antenna complex alpha/beta subunit THIMO_RS14210 PF00556 Antenna complex alpha/beta subunit THIMO_RS14225 PF00556 Antenna complex alpha/beta subunit THIMO_RS14230 PF00556 Antenna complex alpha/beta subunit THIMO_RS14235 PF00556 Antenna complex alpha/beta subunit THIMO_RS14245 PF00556 Antenna complex alpha/beta subunit THIMO_RS14250 PF02276 Photosynthetic reaction centre cytochrome C subunit THIMO_RS14255 PF00124 Photosynthetic reaction centre protein THIMO_RS14260 PF00124 Photosynthetic reaction centre protein THIMO_RS14270 PF00556 Antenna complex alpha/beta subunit THIMO_RS14275 PF00556 Antenna complex alpha/beta subunit THIMO_RS14280 PF00556 Antenna complex alpha/beta subunit THIMO_RS14285 PF08369 Proto-chlorophyllide reductase 57 kD subunit THIMO_RS14285 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS14290 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS14295 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family THIMO_RS14305 PF16864 Dimerisation domain THIMO_RS14305 PF00891 O-methyltransferase domain THIMO_RS14310 PF00348 Polyprenyl synthetase THIMO_RS14315 PF01593 Flavin containing amine oxidoreductase THIMO_RS14330 PF01593 Flavin containing amine oxidoreductase THIMO_RS14335 PF12697 Alpha/beta hydrolase family THIMO_RS14340 PF17863 AAA lid domain THIMO_RS14345 PF17863 AAA lid domain THIMO_RS14345 PF01078 Magnesium chelatase, subunit ChlI THIMO_RS14350 PF12291 Protein of unknown function (DUF3623) THIMO_RS14360 PF03703 Bacterial PH domain THIMO_RS14365 PF05239 PRC-barrel domain THIMO_RS14365 PF03967 Photosynthetic reaction centre, H-chain N-terminal region THIMO_RS14370 PF03209 PUCC protein THIMO_RS14375 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus THIMO_RS14375 PF05175 Methyltransferase small domain THIMO_RS14380 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family THIMO_RS14385 PF02514 CobN/Magnesium Chelatase THIMO_RS14385 PF11965 Domain of unknown function (DUF3479) THIMO_RS14390 PF08369 Proto-chlorophyllide reductase 57 kD subunit THIMO_RS14390 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS14395 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS14400 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) THIMO_RS14410 PF08241 Methyltransferase domain THIMO_RS14415 PF00561 alpha/beta hydrolase fold THIMO_RS14420 PF00155 Aminotransferase class I and II THIMO_RS14425 PF04055 Radical SAM superfamily THIMO_RS14425 PF06968 Biotin and Thiamin Synthesis associated domain THIMO_RS14430 PF00849 RNA pseudouridylate synthase THIMO_RS14445 PF00561 alpha/beta hydrolase fold THIMO_RS14450 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THIMO_RS14450 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THIMO_RS14455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THIMO_RS14455 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THIMO_RS14460 PF05222 Alanine dehydrogenase/PNT, N-terminal domain THIMO_RS14460 PF01262 Alanine dehydrogenase/PNT, C-terminal domain THIMO_RS14470 PF00183 Hsp90 protein THIMO_RS14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS14475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIMO_RS14475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIMO_RS14475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIMO_RS14475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIMO_RS14480 PF17862 AAA+ lid domain THIMO_RS14480 PF06480 FtsH Extracellular THIMO_RS14480 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS14480 PF01434 Peptidase family M41 THIMO_RS14490 PF00293 NUDIX domain THIMO_RS14495 PF00152 tRNA synthetases class II (D, K and N) THIMO_RS14495 PF02938 GAD domain THIMO_RS14495 PF01336 OB-fold nucleic acid binding domain THIMO_RS14510 PF01875 Memo-like protein THIMO_RS14525 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase THIMO_RS14530 PF00483 Nucleotidyl transferase THIMO_RS14535 PF16363 GDP-mannose 4,6 dehydratase THIMO_RS14540 PF02397 Bacterial sugar transferase THIMO_RS14550 PF03033 Glycosyltransferase family 28 N-terminal domain THIMO_RS14550 PF04101 Glycosyltransferase family 28 C-terminal domain THIMO_RS14570 PF13817 IS66 C-terminal element THIMO_RS14570 PF03050 Transposase IS66 family THIMO_RS14570 PF13005 zinc-finger binding domain of transposase IS66 THIMO_RS14570 PF13007 Transposase C of IS166 homeodomain THIMO_RS14650 PF02954 Bacterial regulatory protein, Fis family THIMO_RS14650 PF00072 Response regulator receiver domain THIMO_RS14650 PF00158 Sigma-54 interaction domain THIMO_RS14655 PF01464 Transglycosylase SLT domain THIMO_RS14710 PF00793 DAHP synthetase I family THIMO_RS14715 PF00271 Helicase conserved C-terminal domain THIMO_RS14715 PF00570 HRDC domain THIMO_RS14715 PF16124 RecQ zinc-binding THIMO_RS14715 PF09382 RQC domain THIMO_RS14715 PF00270 DEAD/DEAH box helicase THIMO_RS14730 PF07690 Major Facilitator Superfamily THIMO_RS14735 PF04381 Putative exonuclease, RdgC THIMO_RS14745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase THIMO_RS14750 PF00091 Tubulin/FtsZ family, GTPase domain THIMO_RS14750 PF12327 FtsZ family, C-terminal domain THIMO_RS14755 PF02491 SHS2 domain inserted in FTSA THIMO_RS14760 PF08478 POTRA domain, FtsQ-type THIMO_RS14760 PF03799 Cell division protein FtsQ THIMO_RS14765 PF01820 D-ala D-ala ligase N-terminus THIMO_RS14765 PF07478 D-ala D-ala ligase C-terminus THIMO_RS14770 PF01565 FAD binding domain THIMO_RS14770 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THIMO_RS14775 PF01225 Mur ligase family, catalytic domain THIMO_RS14775 PF08245 Mur ligase middle domain THIMO_RS14775 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS14780 PF04101 Glycosyltransferase family 28 C-terminal domain THIMO_RS14780 PF03033 Glycosyltransferase family 28 N-terminal domain THIMO_RS14785 PF01098 Cell cycle protein THIMO_RS14790 PF08245 Mur ligase middle domain THIMO_RS14790 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS14795 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 THIMO_RS14795 PF00953 Glycosyl transferase family 4 THIMO_RS14800 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS14800 PF01225 Mur ligase family, catalytic domain THIMO_RS14800 PF08245 Mur ligase middle domain THIMO_RS14805 PF02875 Mur ligase family, glutamate ligase domain THIMO_RS14805 PF01225 Mur ligase family, catalytic domain THIMO_RS14805 PF08245 Mur ligase middle domain THIMO_RS14810 PF00905 Penicillin binding protein transpeptidase domain THIMO_RS14810 PF03717 Penicillin-binding Protein dimerisation domain THIMO_RS14815 PF04999 Cell division protein FtsL THIMO_RS14820 PF01795 MraW methylase family THIMO_RS14825 PF02381 MraZ protein, putative antitoxin-like THIMO_RS14830 PF02654 Cobalamin-5-phosphate synthase THIMO_RS14835 PF00300 Histidine phosphatase superfamily (branch 1) THIMO_RS14840 PF07977 FabA-like domain THIMO_RS14845 PF00005 ABC transporter THIMO_RS14855 PF00899 ThiF family THIMO_RS14865 PF05175 Methyltransferase small domain THIMO_RS14865 PF17827 PrmC N-terminal domain THIMO_RS14870 PF03462 PCRF domain THIMO_RS14870 PF00472 RF-1 domain THIMO_RS14875 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THIMO_RS14875 PF01488 Shikimate / quinate 5-dehydrogenase THIMO_RS14875 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain THIMO_RS14885 PF08544 GHMP kinases C terminal THIMO_RS14885 PF00288 GHMP kinases N terminal domain THIMO_RS14895 PF14572 Phosphoribosyl synthetase-associated domain THIMO_RS14895 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THIMO_RS14900 PF01386 Ribosomal L25p family THIMO_RS14900 PF14693 Ribosomal protein TL5, C-terminal domain THIMO_RS14905 PF01195 Peptidyl-tRNA hydrolase THIMO_RS14910 PF16363 GDP-mannose 4,6 dehydratase THIMO_RS14920 PF13426 PAS domain THIMO_RS14920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS14920 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS14920 PF00672 HAMP domain THIMO_RS14925 PF00072 Response regulator receiver domain THIMO_RS14925 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS14930 PF00529 HlyD membrane-fusion protein of T1SS THIMO_RS14930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIMO_RS14935 PF00873 AcrB/AcrD/AcrF family THIMO_RS14940 PF02321 Outer membrane efflux protein THIMO_RS14955 PF05973 Phage derived protein Gp49-like (DUF891) THIMO_RS14965 PF00580 UvrD/REP helicase N-terminal domain THIMO_RS14965 PF13361 UvrD-like helicase C-terminal domain THIMO_RS14985 PF01926 50S ribosome-binding GTPase THIMO_RS14985 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THIMO_RS14995 PF03006 Haemolysin-III related THIMO_RS15000 PF00005 ABC transporter THIMO_RS15015 PF00300 Histidine phosphatase superfamily (branch 1) THIMO_RS15020 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS15030 PF00857 Isochorismatase family THIMO_RS15035 PF07963 Prokaryotic N-terminal methylation motif THIMO_RS15035 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor THIMO_RS15040 PF05567 Neisseria PilC beta-propeller domain THIMO_RS15070 PF00270 DEAD/DEAH box helicase THIMO_RS15070 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold THIMO_RS15070 PF00271 Helicase conserved C-terminal domain THIMO_RS15070 PF04408 Helicase associated domain (HA2) THIMO_RS15070 PF11898 Domain of unknown function (DUF3418) THIMO_RS15075 PF01835 MG2 domain THIMO_RS15075 PF17962 Bacterial macroglobulin domain 6 THIMO_RS15075 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain THIMO_RS15075 PF00207 Alpha-2-macroglobulin family THIMO_RS15075 PF07703 Alpha-2-macroglobulin bait region domain THIMO_RS15075 PF11974 Bacterial alpha-2-macroglobulin MG3 domain THIMO_RS15075 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain THIMO_RS15075 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain THIMO_RS15080 PF00905 Penicillin binding protein transpeptidase domain THIMO_RS15080 PF00912 Transglycosylase THIMO_RS15080 PF06832 Penicillin-Binding Protein C-terminus Family THIMO_RS15110 PF00005 ABC transporter THIMO_RS15110 PF08402 TOBE domain THIMO_RS15115 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS15135 PF03544 Gram-negative bacterial TonB protein C-terminal THIMO_RS15140 PF02472 Biopolymer transport protein ExbD/TolR THIMO_RS15145 PF01618 MotA/TolQ/ExbB proton channel family THIMO_RS15155 PF00593 TonB dependent receptor THIMO_RS15155 PF07715 TonB-dependent Receptor Plug Domain THIMO_RS15160 PF01791 DeoC/LacD family aldolase THIMO_RS15170 PF01906 Putative heavy-metal-binding THIMO_RS15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS15190 PF00072 Response regulator receiver domain THIMO_RS15190 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS15205 PF01471 Putative peptidoglycan binding domain THIMO_RS15205 PF07486 Cell Wall Hydrolase THIMO_RS15220 PF00361 Proton-conducting membrane transporter THIMO_RS15225 PF00146 NADH dehydrogenase THIMO_RS15235 PF00361 Proton-conducting membrane transporter THIMO_RS15240 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THIMO_RS15245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS15320 PF01850 PIN domain THIMO_RS15330 PF04434 SWIM zinc finger THIMO_RS15330 PF00271 Helicase conserved C-terminal domain THIMO_RS15330 PF00176 SNF2 family N-terminal domain THIMO_RS15345 PF05970 PIF1-like helicase THIMO_RS15355 PF13276 HTH-like domain THIMO_RS15355 PF00665 Integrase core domain THIMO_RS15355 PF13333 Integrase core domain THIMO_RS15360 PF00639 PPIC-type PPIASE domain THIMO_RS15365 PF04319 NifZ domain THIMO_RS15370 PF03206 Nitrogen fixation protein NifW THIMO_RS15380 PF00682 HMGL-like THIMO_RS15385 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THIMO_RS15385 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS15390 PF00374 Nickel-dependent hydrogenase THIMO_RS15395 PF01292 Prokaryotic cytochrome b561 THIMO_RS15400 PF01750 Hydrogenase maturation protease THIMO_RS15410 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal THIMO_RS15410 PF02579 Dinitrogenase iron-molybdenum cofactor THIMO_RS15415 PF00037 4Fe-4S binding domain THIMO_RS15420 PF06988 NifT/FixU protein THIMO_RS15425 PF11844 Domain of unknown function (DUF3364) THIMO_RS15425 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS15430 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS15435 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family THIMO_RS15440 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) THIMO_RS15455 PF04055 Radical SAM superfamily THIMO_RS15455 PF02579 Dinitrogenase iron-molybdenum cofactor THIMO_RS15460 PF12838 4Fe-4S dicluster domain THIMO_RS15465 PF00258 Flavodoxin THIMO_RS15465 PF00753 Metallo-beta-lactamase superfamily THIMO_RS15470 PF00111 2Fe-2S iron-sulfur cluster binding domain THIMO_RS15475 PF00111 2Fe-2S iron-sulfur cluster binding domain THIMO_RS15480 PF04891 NifQ THIMO_RS15485 PF03747 ADP-ribosylglycohydrolase THIMO_RS15490 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS15490 PF05231 MASE1 THIMO_RS15490 PF08447 PAS fold THIMO_RS15490 PF13426 PAS domain THIMO_RS15490 PF00563 EAL domain THIMO_RS15490 PF08448 PAS fold THIMO_RS15510 PF03949 Malic enzyme, NAD binding domain THIMO_RS15510 PF01515 Phosphate acetyl/butaryl transferase THIMO_RS15510 PF00390 Malic enzyme, N-terminal domain THIMO_RS15520 PF00149 Calcineurin-like phosphoesterase THIMO_RS15525 PF04379 ApaG domain THIMO_RS15540 PF09312 SurA N-terminal domain THIMO_RS15540 PF00639 PPIC-type PPIASE domain THIMO_RS15545 PF04453 LPS transport system D THIMO_RS15545 PF03968 OstA-like protein THIMO_RS15550 PF00586 AIR synthase related protein, N-terminal domain THIMO_RS15550 PF02769 AIR synthase related protein, C-terminal domain THIMO_RS15555 PF01924 Hydrogenase formation hypA family THIMO_RS15560 PF01455 HupF/HypC family THIMO_RS15565 PF00374 Nickel-dependent hydrogenase THIMO_RS15570 PF05175 Methyltransferase small domain THIMO_RS15580 PF01678 Diaminopimelate epimerase THIMO_RS15585 PF04340 Protein of unknown function, DUF484 THIMO_RS15590 PF00589 Phage integrase family THIMO_RS15590 PF02899 Phage integrase, N-terminal SAM-like domain THIMO_RS15600 PF00227 Proteasome subunit THIMO_RS15605 PF07724 AAA domain (Cdc48 subfamily) THIMO_RS15605 PF00004 ATPase family associated with various cellular activities (AAA) THIMO_RS15610 PF13847 Methyltransferase domain THIMO_RS15625 PF00202 Aminotransferase class-III THIMO_RS15630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THIMO_RS15630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THIMO_RS15650 PF07690 Major Facilitator Superfamily THIMO_RS15655 PF11066 Protein of unknown function (DUF2867) THIMO_RS15655 PF13460 NAD(P)H-binding THIMO_RS15670 PF00106 short chain dehydrogenase THIMO_RS15685 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS15685 PF00672 HAMP domain THIMO_RS15685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS15690 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS15690 PF11808 Phosphate regulon sensor protein PhoR THIMO_RS15690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS15690 PF00989 PAS fold THIMO_RS15695 PF00072 Response regulator receiver domain THIMO_RS15695 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS15700 PF12706 Beta-lactamase superfamily domain THIMO_RS15705 PF00293 NUDIX domain THIMO_RS15710 PF02657 Fe-S metabolism associated domain THIMO_RS15715 PF01521 Iron-sulphur cluster biosynthesis THIMO_RS15720 PF04011 LemA family THIMO_RS15730 PF00563 EAL domain THIMO_RS15730 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS15730 PF08447 PAS fold THIMO_RS15730 PF08448 PAS fold THIMO_RS15760 PF12697 Alpha/beta hydrolase family THIMO_RS15770 PF00425 chorismate binding enzyme THIMO_RS15775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THIMO_RS15775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIMO_RS15780 PF00378 Enoyl-CoA hydratase/isomerase THIMO_RS15785 PF01040 UbiA prenyltransferase family THIMO_RS15790 PF13378 Enolase C-terminal domain-like THIMO_RS15790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain THIMO_RS15800 PF02446 4-alpha-glucanotransferase THIMO_RS15805 PF00483 Nucleotidyl transferase THIMO_RS15810 PF00128 Alpha amylase, catalytic domain THIMO_RS15810 PF02806 Alpha amylase, C-terminal all-beta domain THIMO_RS15810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THIMO_RS15815 PF00313 'Cold-shock' DNA-binding domain THIMO_RS15820 PF01145 SPFH domain / Band 7 family THIMO_RS15820 PF16200 C-terminal region of band_7 THIMO_RS15830 PF02391 MoaE protein THIMO_RS15835 PF04715 Anthranilate synthase component I, N terminal region THIMO_RS15835 PF00425 chorismate binding enzyme THIMO_RS15840 PF02896 PEP-utilising enzyme, TIM barrel domain THIMO_RS15840 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THIMO_RS15840 PF00391 PEP-utilising enzyme, mobile domain THIMO_RS15845 PF08264 Anticodon-binding domain of tRNA THIMO_RS15845 PF10458 Valyl tRNA synthetase tRNA binding arm THIMO_RS15845 PF00133 tRNA synthetases class I (I, L, M and V) THIMO_RS15850 PF13545 Crp-like helix-turn-helix domain THIMO_RS15850 PF00027 Cyclic nucleotide-binding domain THIMO_RS15860 PF04333 MlaA lipoprotein THIMO_RS15865 PF00929 Exonuclease THIMO_RS15870 PF00462 Glutaredoxin THIMO_RS15875 PF13537 Glutamine amidotransferase domain THIMO_RS15875 PF00733 Asparagine synthase THIMO_RS15890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THIMO_RS15890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THIMO_RS15900 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THIMO_RS15900 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THIMO_RS15905 PF00374 Nickel-dependent hydrogenase THIMO_RS15920 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS15920 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THIMO_RS15960 PF02525 Flavodoxin-like fold THIMO_RS15975 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THIMO_RS15985 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIMO_RS15995 PF13244 Domain of unknown function (DUF4040) THIMO_RS15995 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THIMO_RS15995 PF00361 Proton-conducting membrane transporter THIMO_RS15995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THIMO_RS16000 PF03167 Uracil DNA glycosylase superfamily THIMO_RS16005 PF00682 HMGL-like THIMO_RS16005 PF08502 LeuA allosteric (dimerisation) domain THIMO_RS16010 PF03466 LysR substrate binding domain THIMO_RS16010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIMO_RS16015 PF04358 DsrC like protein THIMO_RS16020 PF00478 IMP dehydrogenase / GMP reductase domain THIMO_RS16020 PF00571 CBS domain THIMO_RS16030 PF03063 Prismane/CO dehydrogenase family THIMO_RS16035 PF01734 Patatin-like phospholipase THIMO_RS16035 PF00027 Cyclic nucleotide-binding domain THIMO_RS16055 PF00483 Nucleotidyl transferase THIMO_RS16060 PF06415 BPG-independent PGAM N-terminus (iPGM_N) THIMO_RS16060 PF01676 Metalloenzyme superfamily THIMO_RS16065 PF00303 Thymidylate synthase THIMO_RS16070 PF01618 MotA/TolQ/ExbB proton channel family THIMO_RS16075 PF02472 Biopolymer transport protein ExbD/TolR THIMO_RS16080 PF00005 ABC transporter THIMO_RS16080 PF00664 ABC transporter transmembrane region THIMO_RS16085 PF02606 Tetraacyldisaccharide-1-P 4'-kinase THIMO_RS16090 PF03966 Trm112p-like protein THIMO_RS16095 PF02348 Cytidylyltransferase THIMO_RS16105 PF00999 Sodium/hydrogen exchanger family THIMO_RS16135 PF13411 MerR HTH family regulatory protein THIMO_RS16140 PF00403 Heavy-metal-associated domain THIMO_RS16145 PF00403 Heavy-metal-associated domain THIMO_RS16155 PF01384 Phosphate transporter family THIMO_RS16160 PF12627 Probable RNA and SrmB- binding site of polymerase A THIMO_RS16160 PF01743 Poly A polymerase head domain THIMO_RS16160 PF01966 HD domain THIMO_RS16185 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS16185 PF00072 Response regulator receiver domain THIMO_RS16195 PF00155 Aminotransferase class I and II THIMO_RS16200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS16200 PF07685 CobB/CobQ-like glutamine amidotransferase domain THIMO_RS16205 PF02277 Phosphoribosyltransferase THIMO_RS16220 PF09957 Bacterial antitoxin of type II TA system, VapB THIMO_RS16265 PF01435 Peptidase family M48 THIMO_RS16275 PF00732 GMC oxidoreductase THIMO_RS16275 PF05199 GMC oxidoreductase THIMO_RS16285 PF01734 Patatin-like phospholipase THIMO_RS16295 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS16295 PF00672 HAMP domain THIMO_RS16300 PF00072 Response regulator receiver domain THIMO_RS16300 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS16315 PF17912 MalK OB fold domain THIMO_RS16315 PF00005 ABC transporter THIMO_RS16320 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS16325 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS16330 PF01547 Bacterial extracellular solute-binding protein THIMO_RS16345 PF00202 Aminotransferase class-III THIMO_RS16350 PF00534 Glycosyl transferases group 1 THIMO_RS16350 PF08323 Starch synthase catalytic domain THIMO_RS16355 PF09087 Cyclomaltodextrinase, N-terminal THIMO_RS16355 PF10438 Cyclo-malto-dextrinase C-terminal domain THIMO_RS16355 PF00128 Alpha amylase, catalytic domain THIMO_RS16365 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THIMO_RS16365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THIMO_RS16375 PF03372 Endonuclease/Exonuclease/phosphatase family THIMO_RS16380 PF04055 Radical SAM superfamily THIMO_RS16380 PF01938 TRAM domain THIMO_RS16380 PF00919 Uncharacterized protein family UPF0004 THIMO_RS16420 PF12161 HsdM N-terminal domain THIMO_RS16420 PF02384 N-6 DNA Methylase THIMO_RS16435 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB THIMO_RS16460 PF01381 Helix-turn-helix THIMO_RS16480 PF14437 MafB19-like deaminase THIMO_RS16490 PF13597 Anaerobic ribonucleoside-triphosphate reductase THIMO_RS16490 PF03477 ATP cone domain THIMO_RS16520 PF02384 N-6 DNA Methylase THIMO_RS16535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIMO_RS16535 PF00672 HAMP domain THIMO_RS16535 PF02743 Cache domain THIMO_RS16555 PF00873 AcrB/AcrD/AcrF family THIMO_RS16565 PF13617 YnbE-like lipoprotein THIMO_RS16610 PF00669 Bacterial flagellin N-terminal helical region THIMO_RS16615 PF00460 Flagella basal body rod protein THIMO_RS16615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIMO_RS16620 PF10135 Rod binding protein THIMO_RS16620 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase THIMO_RS16630 PF02107 Flagellar L-ring protein THIMO_RS16635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIMO_RS16635 PF00460 Flagella basal body rod protein THIMO_RS16640 PF00460 Flagella basal body rod protein THIMO_RS16640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIMO_RS16645 PF07559 Flagellar basal body protein FlaE THIMO_RS16645 PF00460 Flagella basal body rod protein THIMO_RS16645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIMO_RS16650 PF13860 FlgD Ig-like domain THIMO_RS16650 PF03963 Flagellar hook capping protein - N-terminal region THIMO_RS16650 PF13861 FlgD Tudor-like domain THIMO_RS16655 PF00460 Flagella basal body rod protein THIMO_RS16655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIMO_RS16670 PF07722 Peptidase C26 THIMO_RS16695 PF12627 Probable RNA and SrmB- binding site of polymerase A THIMO_RS16695 PF12626 Polymerase A arginine-rich C-terminus THIMO_RS16695 PF01743 Poly A polymerase head domain THIMO_RS16700 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THIMO_RS16705 PF02548 Ketopantoate hydroxymethyltransferase THIMO_RS16710 PF02569 Pantoate-beta-alanine ligase THIMO_RS16715 PF02261 Aspartate decarboxylase THIMO_RS16720 PF08323 Starch synthase catalytic domain THIMO_RS16720 PF00534 Glycosyl transferases group 1 THIMO_RS16725 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THIMO_RS16725 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THIMO_RS16730 PF00342 Phosphoglucose isomerase THIMO_RS16735 PF08298 PrkA AAA domain THIMO_RS16735 PF06798 PrkA serine protein kinase C-terminal domain THIMO_RS16740 PF04285 Protein of unknown function (DUF444) THIMO_RS16745 PF04293 SpoVR like protein THIMO_RS16750 PF03734 L,D-transpeptidase catalytic domain THIMO_RS16755 PF08443 RimK-like ATP-grasp domain THIMO_RS16755 PF18030 RimK PreATP-grasp domain THIMO_RS16765 PF01636 Phosphotransferase enzyme family THIMO_RS16780 PF00589 Phage integrase family THIMO_RS16780 PF13495 Phage integrase, N-terminal SAM-like domain THIMO_RS16805 PF01850 PIN domain THIMO_RS16830 PF00571 CBS domain THIMO_RS16830 PF01595 Cyclin M transmembrane N-terminal domain THIMO_RS16840 PF00141 Peroxidase THIMO_RS16860 PF01734 Patatin-like phospholipase THIMO_RS16860 PF11856 Protein of unknown function (DUF3376) THIMO_RS16865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS16875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS16880 PF02571 Precorrin-6x reductase CbiJ/CobK THIMO_RS16885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS16890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIMO_RS16895 PF02570 Precorrin-8X methylmutase THIMO_RS16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS16900 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS16900 PF00672 HAMP domain THIMO_RS16905 PF00072 Response regulator receiver domain THIMO_RS16905 PF00486 Transcriptional regulatory protein, C terminal THIMO_RS16925 PF00174 Oxidoreductase molybdopterin binding domain THIMO_RS16930 PF01292 Prokaryotic cytochrome b561 THIMO_RS16945 PF09924 Uncharacterised conserved protein (DUF2156) THIMO_RS16945 PF03706 Lysylphosphatidylglycerol synthase TM region THIMO_RS16970 PF00005 ABC transporter THIMO_RS16970 PF00664 ABC transporter transmembrane region THIMO_RS17035 PF13537 Glutamine amidotransferase domain THIMO_RS17035 PF00733 Asparagine synthase THIMO_RS17075 PF16123 Hydroxyacylglutathione hydrolase C-terminus THIMO_RS17075 PF00753 Metallo-beta-lactamase superfamily THIMO_RS17080 PF00571 CBS domain THIMO_RS17080 PF00478 IMP dehydrogenase / GMP reductase domain THIMO_RS17085 PF00117 Glutamine amidotransferase class-I THIMO_RS17085 PF00958 GMP synthase C terminal domain THIMO_RS17085 PF02540 NAD synthase THIMO_RS17095 PF01370 NAD dependent epimerase/dehydratase family THIMO_RS17100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THIMO_RS17100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THIMO_RS17100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THIMO_RS17105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THIMO_RS17110 PF14489 QueF-like protein THIMO_RS17115 PF03884 DNA gyrase inhibitor YacG THIMO_RS17120 PF07072 Cell division protein THIMO_RS17125 PF02885 Glycosyl transferase family, helical bundle domain THIMO_RS17125 PF00591 Glycosyl transferase family, a/b domain THIMO_RS17125 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain THIMO_RS17130 PF14572 Phosphoribosyl synthetase-associated domain THIMO_RS17130 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THIMO_RS17135 PF01709 Transcriptional regulator THIMO_RS17140 PF02075 Crossover junction endodeoxyribonuclease RuvC THIMO_RS17145 PF01330 RuvA N terminal domain THIMO_RS17145 PF07499 RuvA, C-terminal domain THIMO_RS17160 PF00205 Thiamine pyrophosphate enzyme, central domain THIMO_RS17160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THIMO_RS17160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIMO_RS17170 PF00011 Hsp20/alpha crystallin family THIMO_RS17175 PF00011 Hsp20/alpha crystallin family THIMO_RS17180 PF01208 Uroporphyrinogen decarboxylase (URO-D) THIMO_RS17185 PF04545 Sigma-70, region 4 THIMO_RS17185 PF04542 Sigma-70 region 2 THIMO_RS17185 PF00140 Sigma-70 factor, region 1.2 THIMO_RS17190 PF18075 FtsX extracellular domain THIMO_RS17195 PF00005 ABC transporter THIMO_RS17200 PF00448 SRP54-type protein, GTPase domain THIMO_RS17200 PF02881 SRP54-type protein, helical bundle domain THIMO_RS17205 PF05193 Peptidase M16 inactive domain THIMO_RS17205 PF00675 Insulinase (Peptidase family M16) THIMO_RS17210 PF05193 Peptidase M16 inactive domain THIMO_RS17220 PF01467 Cytidylyltransferase-like THIMO_RS17225 PF00037 4Fe-4S binding domain THIMO_RS17235 PF06827 Zinc finger found in FPG and IleRS THIMO_RS17235 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain THIMO_RS17235 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain THIMO_RS17245 PF04760 Translation initiation factor IF-2, N-terminal region THIMO_RS17245 PF00009 Elongation factor Tu GTP binding domain THIMO_RS17245 PF11987 Translation-initiation factor 2 THIMO_RS17260 PF00106 short chain dehydrogenase THIMO_RS17270 PF01569 PAP2 superfamily THIMO_RS17305 PF12838 4Fe-4S dicluster domain THIMO_RS17310 PF03270 Protein of unknown function, DUF269 THIMO_RS17315 PF02579 Dinitrogenase iron-molybdenum cofactor THIMO_RS17320 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS17325 PF00148 Nitrogenase component 1 type Oxidoreductase THIMO_RS17340 PF04715 Anthranilate synthase component I, N terminal region THIMO_RS17340 PF00425 chorismate binding enzyme THIMO_RS17345 PF13419 Haloacid dehalogenase-like hydrolase THIMO_RS17350 PF00834 Ribulose-phosphate 3 epimerase family THIMO_RS17355 PF00248 Aldo/keto reductase family THIMO_RS17360 PF00156 Phosphoribosyl transferase domain THIMO_RS17370 PF00571 CBS domain THIMO_RS17370 PF00005 ABC transporter THIMO_RS17375 PF00528 Binding-protein-dependent transport system inner membrane component THIMO_RS17380 PF04069 Substrate binding domain of ABC-type glycine betaine transport system THIMO_RS17390 PF02028 BCCT, betaine/carnitine/choline family transporter THIMO_RS17410 PF01043 SecA preprotein cross-linking domain THIMO_RS17410 PF02810 SEC-C motif THIMO_RS17410 PF07517 SecA DEAD-like domain THIMO_RS17410 PF07516 SecA Wing and Scaffold domain THIMO_RS17415 PF01960 ArgJ family THIMO_RS17420 PF00293 NUDIX domain THIMO_RS17425 PF01965 DJ-1/PfpI family THIMO_RS17430 PF13180 PDZ domain THIMO_RS17430 PF03572 Peptidase family S41 THIMO_RS17435 PF01551 Peptidase family M23 THIMO_RS17445 PF00581 Rhodanese-like domain THIMO_RS17450 PF02556 Preprotein translocase subunit SecB THIMO_RS17455 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THIMO_RS17455 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THIMO_RS17460 PF00588 SpoU rRNA Methylase family THIMO_RS17465 PF01180 Dihydroorotate dehydrogenase THIMO_RS17480 PF00158 Sigma-54 interaction domain THIMO_RS17480 PF00072 Response regulator receiver domain THIMO_RS17480 PF02954 Bacterial regulatory protein, Fis family THIMO_RS17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS17485 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS17485 PF00989 PAS fold THIMO_RS17495 PF00120 Glutamine synthetase, catalytic domain THIMO_RS17495 PF03951 Glutamine synthetase, beta-Grasp domain THIMO_RS17500 PF01545 Cation efflux family THIMO_RS17500 PF16916 Dimerisation domain of Zinc Transporter THIMO_RS17505 PF02091 Glycyl-tRNA synthetase alpha subunit THIMO_RS17510 PF02092 Glycyl-tRNA synthetase beta subunit THIMO_RS17510 PF05746 DALR anticodon binding domain THIMO_RS17535 PF02342 TerD domain THIMO_RS17545 PF02342 TerD domain THIMO_RS17550 PF02342 TerD domain THIMO_RS17555 PF02342 TerD domain THIMO_RS17570 PF11202 Phosphoribosyl transferase (PRTase) THIMO_RS17570 PF15608 PELOTA RNA binding domain THIMO_RS17580 PF00483 Nucleotidyl transferase THIMO_RS17590 PF01926 50S ribosome-binding GTPase THIMO_RS17590 PF12631 MnmE helical domain THIMO_RS17590 PF10396 GTP-binding protein TrmE N-terminus THIMO_RS17595 PF14849 YidC periplasmic domain THIMO_RS17595 PF02096 60Kd inner membrane protein THIMO_RS17605 PF01809 Putative membrane protein insertion efficiency factor THIMO_RS17765 PF01297 Zinc-uptake complex component A periplasmic THIMO_RS17830 PF03958 Bacterial type II/III secretion system short domain THIMO_RS17830 PF00263 Bacterial type II and III secretion system protein THIMO_RS17935 PF08543 Phosphomethylpyrimidine kinase THIMO_RS18030 PF03646 FlaG protein THIMO_RS18045 PF04347 Flagellar biosynthesis protein, FliO THIMO_RS18055 PF01867 CRISPR associated protein Cas1 THIMO_RS18070 PF13186 Iron-sulfur cluster-binding domain THIMO_RS18070 PF04055 Radical SAM superfamily THIMO_RS18090 PF03442 Carbohydrate binding domain X2 THIMO_RS18090 PF00942 Cellulose binding domain THIMO_RS18115 PF04205 FMN-binding domain THIMO_RS18120 PF07963 Prokaryotic N-terminal methylation motif THIMO_RS18120 PF00114 Pilin (bacterial filament) THIMO_RS18125 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS18125 PF00563 EAL domain THIMO_RS18125 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS18175 PF02001 Protein of unknown function DUF134 THIMO_RS18180 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase THIMO_RS18185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIMO_RS18185 PF08269 Cache domain THIMO_RS18220 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) THIMO_RS18240 PF07664 Ferrous iron transport protein B C terminus THIMO_RS18240 PF17910 FeoB cytosolic helical domain THIMO_RS18240 PF02421 Ferrous iron transport protein B THIMO_RS18240 PF07670 Nucleoside recognition THIMO_RS18245 PF02421 Ferrous iron transport protein B THIMO_RS18245 PF17910 FeoB cytosolic helical domain THIMO_RS18245 PF07670 Nucleoside recognition THIMO_RS18245 PF07664 Ferrous iron transport protein B C terminus THIMO_RS18255 PF00534 Glycosyl transferases group 1 THIMO_RS18280 PF03705 CheR methyltransferase, all-alpha domain THIMO_RS18280 PF01739 CheR methyltransferase, SAM binding domain THIMO_RS18280 PF01339 CheB methylesterase THIMO_RS18280 PF08448 PAS fold THIMO_RS18325 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS18325 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS18325 PF00563 EAL domain THIMO_RS18350 PF00082 Subtilase family THIMO_RS18355 PF00114 Pilin (bacterial filament) THIMO_RS18355 PF07963 Prokaryotic N-terminal methylation motif THIMO_RS18375 PF00589 Phage integrase family THIMO_RS18375 PF13495 Phage integrase, N-terminal SAM-like domain THIMO_RS18380 PF13495 Phage integrase, N-terminal SAM-like domain THIMO_RS18380 PF00589 Phage integrase family THIMO_RS18385 PF00924 Mechanosensitive ion channel THIMO_RS18400 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF THIMO_RS18400 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF THIMO_RS18400 PF01189 16S rRNA methyltransferase RsmB/F THIMO_RS18410 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS18410 PF00563 EAL domain THIMO_RS18410 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS18415 PF12894 Anaphase-promoting complex subunit 4 WD40 domain THIMO_RS18415 PF00400 WD domain, G-beta repeat THIMO_RS18435 PF00563 EAL domain THIMO_RS18435 PF00990 Diguanylate cyclase, GGDEF domain THIMO_RS18435 PF03707 Bacterial signalling protein N terminal repeat THIMO_RS18465 PF00034 Cytochrome c THIMO_RS18485 PF13654 AAA domain THIMO_RS18485 PF05362 Lon protease (S16) C-terminal proteolytic domain THIMO_RS18495 PF07963 Prokaryotic N-terminal methylation motif THIMO_RS18515 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIMO_RS18515 PF00072 Response regulator receiver domain THIMO_RS18515 PF00512 His Kinase A (phospho-acceptor) domain THIMO_RS18515 PF01627 Hpt domain THIMO_RS18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIMO_RS18515 PF00672 HAMP domain THIMO_RS18520 PF01555 DNA methylase THIMO_RS18530 PF01048 Phosphorylase superfamily THIMO_RS18555 PF03781 Sulfatase-modifying factor enzyme 1 THIMO_RS18605 PF03934 Type II secretion system (T2SS), protein K THIMO_RS18615 PF00795 Carbon-nitrogen hydrolase