THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14791 DNA polymerase beta thumb 256 316 6.8E-17 T 23-04-2016 IPR029398 DNA polymerase beta, thumb domain THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 PANTHER PTHR11276 5 320 2.1E-69 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:1.10.150.110 3 87 4.1E-22 T 23-04-2016 IPR027421 DNA polymerase family X lyase domain THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 241 249 1.72E-6 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 61 78 1.72E-6 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 256 263 1.72E-6 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 298 315 1.72E-6 T 23-04-2016 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:3.30.210.10 258 316 4.6E-20 T 23-04-2016 IPR029398 DNA polymerase beta, thumb domain THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF81301 158 316 5.82E-41 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00481 340 424 1.7E-13 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:3.30.460.10 156 257 1.1E-15 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 54 73 43.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 34 53 1600.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 94 113 2.7 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 129 148 200.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14520 Helix-hairpin-helix domain 94 149 6.3E-9 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF158702 55 147 3.14E-6 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:1.10.150.20 94 149 7.1E-4 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00483 3 316 1.2E-24 T 23-04-2016 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF47802 3 84 1.19E-18 T 23-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF89550 338 572 1.14E-48 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:3.20.20.140 338 567 7.0E-45 T 23-04-2016 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 PIRSF PIRSF005047 3 578 1.2E-224 T 23-04-2016 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06655 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14716 Helix-hairpin-helix domain 5 75 1.4E-18 T 23-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SUPERFAMILY SSF55781 496 676 1.31E-19 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00267 922 1095 3.4E-65 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 PANTHER PTHR10799 821 1206 7.4E-91 T 23-04-2016 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 PANTHER PTHR10799:SF774 821 1206 7.4E-91 T 23-04-2016 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 929 1093 2.5E-44 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00091 386 453 1.7E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00091 689 758 1.1E-4 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00091 808 874 3.4E-4 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Pfam PF08447 PAS fold 412 495 5.7E-11 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Pfam PF13185 GAF domain 530 676 2.7E-16 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SUPERFAMILY SSF55785 680 798 2.58E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00052 1105 1351 8.2E-100 T 23-04-2016 IPR001633 EAL domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Pfam PF00990 Diguanylate cyclase, GGDEF domain 933 1091 1.9E-47 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Gene3D G3DSA:3.30.450.40 504 686 1.3E-21 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SUPERFAMILY SSF141868 1110 1358 1.96E-82 T 23-04-2016 IPR001633 EAL domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Pfam PF00563 EAL domain 1112 1346 1.2E-67 T 23-04-2016 IPR001633 EAL domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SUPERFAMILY SSF55073 938 1096 5.81E-48 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Gene3D G3DSA:3.30.450.20 798 916 1.5E-31 T 23-04-2016 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00086 460 502 2.0E-5 T 23-04-2016 IPR001610 PAC motif THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00086 880 922 1.0E-6 T 23-04-2016 IPR001610 PAC motif THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00086 760 800 0.48 T 23-04-2016 IPR001610 PAC motif THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 685 807 8.6E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 812 929 1.8E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 386 509 9.7E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Pfam PF13426 PAS domain 819 921 2.1E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SUPERFAMILY SSF55785 406 511 6.93E-19 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SMART SM00065 521 685 0.0021 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 SUPERFAMILY SSF55785 797 920 1.61E-28 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Gene3D G3DSA:3.30.70.270 935 1102 1.3E-55 T 23-04-2016 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Pfam PF13188 PAS domain 689 731 1.2E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Gene3D G3DSA:3.20.20.450 1108 1358 1.1E-92 T 23-04-2016 IPR001633 EAL domain THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Gene3D G3DSA:3.30.450.20 687 797 5.0E-19 T 23-04-2016 THIMO_RS18325 cff9430b76477d067c795d8f6130a291 1372 Gene3D G3DSA:3.30.450.20 383 500 1.8E-18 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00073 1350 1445 1.4E-4 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00086 600 639 2.2 T 23-04-2016 IPR001610 PAC motif THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00086 465 505 1.2 T 23-04-2016 IPR001610 PAC motif THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00086 734 776 400.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.565.10 862 1030 1.9E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00387 907 1028 4.2E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF52172 1192 1315 1.57E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 675 783 2.9E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 386 512 2.5E-32 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF00072 Response regulator receiver domain 1194 1307 1.0E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55785 502 637 1.38E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.450.20 503 636 8.0E-14 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.450.20 637 773 1.9E-16 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00388 796 861 3.4E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:1.20.120.160 1353 1445 5.0E-20 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF00989 PAS fold 390 502 2.3E-18 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55785 676 783 2.09E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55874 850 1026 1.44E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF47384 782 862 6.87E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF47226 1340 1436 9.42E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF47226 1293 1306 9.42E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF01627 Hpt domain 1362 1444 2.3E-11 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00448 1192 1310 1.7E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 907 1027 1.9E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.40.50.2300 1181 1315 1.3E-39 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.450.20 380 502 2.6E-29 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PANTHER PTHR24423:SF382 688 1063 8.9E-185 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PANTHER PTHR24423:SF382 1191 1353 8.9E-185 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PANTHER PTHR24423:SF382 377 542 8.9E-185 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PANTHER PTHR24423 688 1063 8.9E-185 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PANTHER PTHR24423 1191 1353 8.9E-185 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PANTHER PTHR24423 377 542 8.9E-185 T 23-04-2016 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 971 981 8.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1012 1025 8.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 988 1006 8.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 953 967 8.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00091 517 587 64.0 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00091 389 455 2.8E-15 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00091 661 728 2.3E-4 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF13426 PAS domain 675 774 3.6E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 797 861 3.1E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF08448 PAS fold 524 640 4.1E-6 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55785 400 512 5.48E-32 T 23-04-2016 IPR000014 PAS domain THIMO_RS18515 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:1.10.287.130 788 857 4.3E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 SUPERFAMILY SSF54768 10 78 1.26E-22 T 23-04-2016 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 ProSitePatterns PS00585 Ribosomal protein S5 signature. 30 62 - T 23-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 165 34.509 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 Pfam PF03719 Ribosomal protein S5, C-terminal domain 89 159 5.1E-29 T 23-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 11 165 4.5E-64 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 Gene3D G3DSA:3.30.160.20 11 74 2.4E-28 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 Pfam PF00333 Ribosomal protein S5, N-terminal domain 14 76 8.6E-27 T 23-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 SUPERFAMILY SSF54211 82 161 3.54E-25 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 PANTHER PTHR13718 11 166 3.0E-66 T 23-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13545 72e9e04efe0e272bcb89213f04cc22fd 168 Gene3D G3DSA:3.30.230.10 79 161 9.5E-30 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 PANTHER PTHR20836 1 274 5.9E-100 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 Gene3D G3DSA:3.40.50.720 1 165 5.4E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 4.7E-43 T 23-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 127 1.3E-39 T 23-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 23-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 4 267 5.1E-102 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 PIRSF PIRSF000161 2 270 9.7E-88 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 PANTHER PTHR20836:SF0 1 274 5.9E-100 T 23-04-2016 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 4 267 35.556 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 SUPERFAMILY SSF51735 238 270 7.15E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 SUPERFAMILY SSF51735 3 128 7.15E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12130 0764cda8c758eff95358fdc41691303f 274 SUPERFAMILY SSF55347 129 238 1.33E-37 T 23-04-2016 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 Gene3D G3DSA:3.40.1350.10 16 119 4.6E-40 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 Hamap MF_00048 UPF0102 protein YraN [yraN]. 8 117 23.829 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 PANTHER PTHR34039 4 120 3.3E-42 T 23-04-2016 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 PANTHER PTHR34039:SF1 4 120 3.3E-42 T 23-04-2016 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 11 118 3.9E-30 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 Pfam PF02021 Uncharacterised protein family UPF0102 16 104 2.4E-30 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 THIMO_RS07015 41c63be6a2b1cbd9f38a2460e88693f0 120 SUPERFAMILY SSF52980 15 107 1.18E-21 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 3.0E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 3.0E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 3.0E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00412 Epoxide hydrolase signature 101 114 2.3E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00412 Epoxide hydrolase signature 37 55 2.3E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00412 Epoxide hydrolase signature 256 278 2.3E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PRINTS PR00412 Epoxide hydrolase signature 223 239 2.3E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 SUPERFAMILY SSF53474 6 277 5.96E-59 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 PANTHER PTHR10992 14 281 3.0E-46 T 23-04-2016 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 Gene3D G3DSA:3.40.50.1820 7 277 4.2E-59 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 5 279 3.5E-89 T 23-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 THIMO_RS05390 909452fee03eb2fcc19b7d0ea96907f8 291 Pfam PF12697 Alpha/beta hydrolase family 33 273 1.2E-24 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF00809 Pterin binding enzyme 361 599 1.3E-58 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:1.10.1240.10 650 737 3.5E-38 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.20.20.20 365 637 1.1E-113 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 PANTHER PTHR21091:SF111 1 403 1.1E-163 T 23-04-2016 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02574 Homocysteine S-methyltransferase 18 326 4.7E-91 T 23-04-2016 IPR003726 Homocysteine-binding domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02310 B12 binding domain 749 841 5.5E-20 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.20.20.330 4 364 6.2E-125 T 23-04-2016 IPR003726 Homocysteine-binding domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF56507 945 1255 9.81E-126 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 PANTHER PTHR21091 1 403 1.1E-163 T 23-04-2016 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.40.50.280 745 896 7.6E-62 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 PIRSF PIRSF000381 2 1223 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 TIGRFAM TIGR02082 metH: methionine synthase 14 1220 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02607 B12 binding domain 659 732 7.2E-26 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF47644 652 739 2.09E-28 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 SMART SM01018 657 740 2.8E-45 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 964 1236 4.0E-123 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF82282 8 400 3.14E-117 T 23-04-2016 IPR003726 Homocysteine-binding domain THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF52242 743 895 1.18E-45 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF51717 357 631 2.09E-88 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 THIMO_RS02335 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.10.196.10 983 1255 5.3E-111 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 THIMO_RS12170 4ed923400bd1dfa249edb3f017de83f5 167 PANTHER PTHR37482:SF1 1 129 1.4E-31 T 23-04-2016 THIMO_RS12170 4ed923400bd1dfa249edb3f017de83f5 167 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 3 146 27.744 T 23-04-2016 IPR026592 Outer membrane protein assembly factor BamE THIMO_RS12170 4ed923400bd1dfa249edb3f017de83f5 167 PANTHER PTHR37482 1 129 1.4E-31 T 23-04-2016 THIMO_RS12170 4ed923400bd1dfa249edb3f017de83f5 167 Pfam PF04355 SmpA / OmlA family 51 120 7.8E-26 T 23-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 PANTHER PTHR11735:SF11 1 128 4.0E-42 T 23-04-2016 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 PANTHER PTHR11735 1 128 4.0E-42 T 23-04-2016 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 SUPERFAMILY SSF53067 109 216 8.03E-19 T 23-04-2016 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 SUPERFAMILY SSF53067 1 100 1.55E-24 T 23-04-2016 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 Gene3D G3DSA:3.30.420.40 1 131 3.1E-38 T 23-04-2016 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 218 3.5E-55 T 23-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 THIMO_RS10045 c63a5dc0393214523d1c5fb0f7c3b958 225 Pfam PF00814 Glycoprotease family 31 149 3.3E-24 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF52317 1041 1296 2.89E-95 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF55326 222 428 4.45E-60 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF56042 433 656 5.23E-50 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1297 20.998 T 23-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF55326 624 818 3.66E-64 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.40.50.880 1044 1274 5.8E-12 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.30.1330.10 646 811 1.0E-14 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.30.1330.10 212 423 1.1E-37 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF56042 830 1036 9.57E-56 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 PANTHER PTHR10099 1 1297 0.0 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SMART SM01211 1043 1296 1.3E-152 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1043 1296 2.6E-104 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF82697 1 152 2.2E-45 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 434 589 8.4E-29 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 840 969 8.2E-15 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 PANTHER PTHR10099:SF5 1 1297 0.0 T 23-04-2016 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1296 0.0 T 23-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS11725 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF109736 156 221 8.11E-21 T 23-04-2016 THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 PIRSF PIRSF005052 1 285 2.5E-109 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 PANTHER PTHR30448 1 284 5.1E-120 T 23-04-2016 THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 PANTHER PTHR30448:SF0 1 284 5.1E-120 T 23-04-2016 THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 285 38.362 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 Pfam PF03668 P-loop ATPase protein family 1 284 8.7E-95 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 Gene3D G3DSA:3.40.50.300 1 157 1.9E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13180 1016ba97526b8078c7bdc799e2b668d0 285 SUPERFAMILY SSF52540 1 156 1.09E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Pfam PF14697 4Fe-4S dicluster domain 104 158 3.8E-16 T 23-04-2016 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 PIRSF PIRSF005784 1 184 2.3E-81 T 23-04-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Gene3D G3DSA:3.30.70.20 80 163 3.4E-15 T 23-04-2016 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 PANTHER PTHR11938 5 170 2.1E-64 T 23-04-2016 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 PANTHER PTHR11938:SF64 5 170 2.1E-64 T 23-04-2016 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 1 179 40.662 T 23-04-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 111 122 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 141 152 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 4 181 5.6E-77 T 23-04-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 SUPERFAMILY SSF54862 34 170 1.1E-27 T 23-04-2016 THIMO_RS04585 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Pfam PF04060 Putative Fe-S cluster 41 73 1.0E-16 T 23-04-2016 IPR007202 4Fe-4S domain GO:0051536 THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 20 89 1.6E-18 T 23-04-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 PANTHER PTHR21367 18 243 1.6E-61 T 23-04-2016 IPR030700 Arginine-tRNA-protein transferase THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 1 240 40.021 T 23-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 PANTHER PTHR21367:SF0 18 243 1.6E-61 T 23-04-2016 THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 SUPERFAMILY SSF55729 87 233 8.33E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 PIRSF PIRSF037208 2 247 9.0E-80 T 23-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic THIMO_RS11715 8685f8a9750aa2f06963bdeba7d72f4f 254 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 109 230 1.4E-34 T 23-04-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 THIMO_RS16505 eea73e8f02409eda01229cc0eada871b 248 SUPERFAMILY SSF53756 5 226 2.17E-46 T 23-04-2016 THIMO_RS16505 eea73e8f02409eda01229cc0eada871b 248 PANTHER PTHR11926:SF394 7 217 4.3E-30 T 23-04-2016 THIMO_RS16505 eea73e8f02409eda01229cc0eada871b 248 PANTHER PTHR11926 7 217 4.3E-30 T 23-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 THIMO_RS16505 eea73e8f02409eda01229cc0eada871b 248 Gene3D G3DSA:3.40.50.2000 52 209 7.9E-37 T 23-04-2016 THIMO_RS16505 eea73e8f02409eda01229cc0eada871b 248 Gene3D G3DSA:3.40.50.2000 4 51 6.7E-16 T 23-04-2016 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 PANTHER PTHR20857 7 204 7.5E-56 T 23-04-2016 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 Gene3D G3DSA:3.20.20.70 3 204 2.2E-61 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 SUPERFAMILY SSF51391 4 203 2.62E-61 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 PANTHER PTHR20857:SF15 7 204 7.5E-56 T 23-04-2016 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 5 205 25.314 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 198 2.3E-55 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 THIMO_RS00330 cd71d520b9c64494bd0c9ad64a19de09 210 Pfam PF02581 Thiamine monophosphate synthase/TENI 7 186 7.0E-52 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:1.10.155.10 263 327 1.3E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SMART SM00091 906 972 2.2E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SMART SM00091 783 848 59.0 T 23-04-2016 IPR000014 PAS domain THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.30.450.20 902 1010 5.1E-21 T 23-04-2016 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF01739 CheR methyltransferase, SAM binding domain 331 519 4.3E-51 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PANTHER PTHR24422:SF6 156 901 1.4E-250 T 23-04-2016 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PANTHER PTHR24422 156 901 1.4E-250 T 23-04-2016 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF47757 264 332 1.02E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.40.50.150 329 524 7.1E-59 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF53335 331 523 1.56E-46 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF01339 CheB methylesterase 65 240 4.1E-56 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF00989 PAS fold 907 1007 1.0E-8 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF13596 PAS domain 785 889 4.6E-21 T 23-04-2016 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF52738 61 246 6.54E-58 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF03705 CheR methyltransferase, all-alpha domain 265 317 2.4E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.40.50.180 60 245 2.9E-66 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF57997 689 790 2.13E-5 T 23-04-2016 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SMART SM00138 264 525 1.8E-76 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 363 383 1.37E-23 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 399 415 1.37E-23 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 484 507 1.37E-23 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 465 479 1.37E-23 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 323 335 1.37E-23 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 286 299 1.37E-23 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF55785 898 1011 7.68E-20 T 23-04-2016 IPR000014 PAS domain THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.30.450.20 775 889 2.7E-6 T 23-04-2016 THIMO_RS11775 ab08e7bbd24687bc79aaff0e74366924 1020 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 905 1012 1.4E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS12450 65674021bfc98e630e3a7a3d3ac03811 276 PANTHER PTHR23088 1 271 3.8E-95 T 23-04-2016 THIMO_RS12450 65674021bfc98e630e3a7a3d3ac03811 276 SUPERFAMILY SSF56317 2 270 3.79E-74 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS12450 65674021bfc98e630e3a7a3d3ac03811 276 Gene3D G3DSA:3.60.110.10 1 273 1.8E-79 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS12450 65674021bfc98e630e3a7a3d3ac03811 276 PANTHER PTHR23088:SF27 1 271 3.8E-95 T 23-04-2016 THIMO_RS12450 65674021bfc98e630e3a7a3d3ac03811 276 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 155 175 - T 23-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site THIMO_RS12450 65674021bfc98e630e3a7a3d3ac03811 276 Pfam PF00795 Carbon-nitrogen hydrolase 6 254 1.1E-50 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS13980 bd7586ce382ed33ecdf8efaf2b1d4458 360 Gene3D G3DSA:2.120.10.30 281 333 2.8E-8 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like THIMO_RS13980 bd7586ce382ed33ecdf8efaf2b1d4458 360 Gene3D G3DSA:2.120.10.30 70 230 2.8E-8 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like THIMO_RS13980 bd7586ce382ed33ecdf8efaf2b1d4458 360 SUPERFAMILY SSF50969 95 350 7.61E-14 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS17560 334b2e0736000ccfdc41aeb4e8a71bf2 383 Gene3D G3DSA:3.40.50.2020 54 190 1.5E-5 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17560 334b2e0736000ccfdc41aeb4e8a71bf2 383 Pfam PF15609 Phosphoribosyl transferase 26 213 3.9E-57 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17560 334b2e0736000ccfdc41aeb4e8a71bf2 383 Pfam PF12500 TRSP domain C terminus to PRTase_2 245 351 2.5E-15 T 23-04-2016 IPR022537 TRSP domain THIMO_RS17560 334b2e0736000ccfdc41aeb4e8a71bf2 383 SUPERFAMILY SSF53271 22 181 2.27E-6 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17560 334b2e0736000ccfdc41aeb4e8a71bf2 383 PIRSF PIRSF020967 1 372 1.3E-88 T 23-04-2016 IPR011214 Uncharacterised conserved protein UCP020967 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF04052 TolB amino-terminal domain 23 127 5.1E-25 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 PANTHER PTHR11731:SF123 158 427 1.8E-82 T 23-04-2016 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 PANTHER PTHR11731:SF123 1 121 1.8E-82 T 23-04-2016 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 240 271 6.5E-7 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 370 392 0.058 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 279 315 6.7E-15 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 194 226 1.1E-8 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 SUPERFAMILY SSF69304 152 427 2.75E-59 T 23-04-2016 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 17 426 1.5E-150 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Hamap MF_00671 Protein TolB [tolB]. 2 425 34.453 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 SUPERFAMILY SSF52964 28 159 1.44E-33 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Gene3D G3DSA:3.40.50.10070 22 149 2.8E-40 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 Gene3D G3DSA:2.130.10.10 150 427 1.7E-79 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 PANTHER PTHR11731 158 427 1.8E-82 T 23-04-2016 THIMO_RS02735 aa77e76554b7ba88e5344e78fb8e0019 430 PANTHER PTHR11731 1 121 1.8E-82 T 23-04-2016 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 PANTHER PTHR24423:SF554 48 442 1.5E-121 T 23-04-2016 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 SMART SM00091 96 162 0.0015 T 23-04-2016 IPR000014 PAS domain THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 Gene3D G3DSA:1.10.287.130 199 257 1.0E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 SMART SM00387 315 427 1.4E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 423 7.2E-122 T 23-04-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 SUPERFAMILY SSF55874 260 423 2.23E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 SUPERFAMILY SSF47384 192 269 1.73E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 SUPERFAMILY SSF55785 84 197 8.79E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 316 425 1.2E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 Gene3D G3DSA:3.30.450.20 96 197 5.5E-10 T 23-04-2016 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 PANTHER PTHR24423 48 442 1.5E-121 T 23-04-2016 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 Pfam PF11808 Domain of unknown function (DUF3329) 12 89 5.6E-14 T 23-04-2016 IPR021766 Protein of unknown function DUF3329 GO:0004673 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 Gene3D G3DSA:3.30.565.10 258 423 7.1E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 380 2.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 2.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 366 2.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 424 2.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 SMART SM00388 205 271 5.5E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15690 c3bc58c664ccf19e823378669d4fbc82 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 206 269 8.4E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.7E-26 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.7E-26 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.7E-26 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.7E-26 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.7E-26 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.40.50.720 1 151 3.1E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.40.50.720 233 375 1.4E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PANTHER PTHR13789 415 454 7.9E-69 T 23-04-2016 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PANTHER PTHR13789 1 169 7.9E-69 T 23-04-2016 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PANTHER PTHR13789:SF225 415 454 7.9E-69 T 23-04-2016 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 PANTHER PTHR13789:SF225 1 169 7.9E-69 T 23-04-2016 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF51735 1 151 1.97E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.30.70.1450 390 436 1.6E-6 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.30.70.1450 152 223 2.2E-5 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02254 TrkA-N domain 3 107 5.3E-27 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02254 TrkA-N domain 235 349 1.4E-24 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF116726 135 221 9.68E-11 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02080 TrkA-C domain 154 221 5.5E-10 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02080 TrkA-C domain 389 440 1.1E-10 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF116726 390 436 4.45E-9 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05930 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF51735 232 375 5.59E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS09520 d1534b477d6e52e129b6910efa3b392e 106 Pfam PF01909 Nucleotidyltransferase domain 14 90 3.4E-8 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS09520 d1534b477d6e52e129b6910efa3b392e 106 PANTHER PTHR33571 5 106 4.3E-20 T 23-04-2016 THIMO_RS09520 d1534b477d6e52e129b6910efa3b392e 106 SUPERFAMILY SSF81301 12 106 1.21E-15 T 23-04-2016 THIMO_RS09520 d1534b477d6e52e129b6910efa3b392e 106 PANTHER PTHR33571:SF1 5 106 4.3E-20 T 23-04-2016 THIMO_RS09520 d1534b477d6e52e129b6910efa3b392e 106 Gene3D G3DSA:3.30.460.10 10 101 1.4E-16 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 Gene3D G3DSA:3.30.70.20 86 160 3.4E-14 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 PANTHER PTHR11938:SF64 21 169 3.5E-41 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 Pfam PF14697 4Fe-4S dicluster domain 103 157 1.1E-12 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 1 176 37.187 T 23-04-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 SUPERFAMILY SSF54862 36 169 1.16E-25 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 Gene3D G3DSA:3.30.70.20 38 58 1.7E-4 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 110 121 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 PANTHER PTHR11938 21 169 3.5E-41 T 23-04-2016 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 5 174 1.2E-60 T 23-04-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 Pfam PF04060 Putative Fe-S cluster 41 73 4.2E-13 T 23-04-2016 IPR007202 4Fe-4S domain GO:0051536 THIMO_RS06075 acdf9de6f8df89c38fc13d65580c171e 176 PIRSF PIRSF005784 1 176 8.0E-62 T 23-04-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 THIMO_RS09260 17aba1f89b019671056154d8e1a9fbc2 374 Gene3D G3DSA:3.40.640.10 23 265 1.2E-61 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS09260 17aba1f89b019671056154d8e1a9fbc2 374 Gene3D G3DSA:3.90.1150.10 266 365 1.3E-11 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS09260 17aba1f89b019671056154d8e1a9fbc2 374 SUPERFAMILY SSF53383 1 364 6.53E-81 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS09260 17aba1f89b019671056154d8e1a9fbc2 374 PANTHER PTHR11601 1 364 6.4E-104 T 23-04-2016 THIMO_RS09260 17aba1f89b019671056154d8e1a9fbc2 374 Pfam PF00266 Aminotransferase class-V 17 340 7.3E-51 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS09260 17aba1f89b019671056154d8e1a9fbc2 374 PANTHER PTHR11601:SF31 1 364 6.4E-104 T 23-04-2016 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 Gene3D G3DSA:3.40.630.10 174 494 7.3E-135 T 23-04-2016 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 487 6.5E-117 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 4.2E-25 T 23-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 348 355 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PANTHER PTHR11963:SF13 11 496 5.4E-212 T 23-04-2016 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 SUPERFAMILY SSF53187 179 494 9.73E-120 T 23-04-2016 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 SUPERFAMILY SSF52949 1 184 9.42E-42 T 23-04-2016 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 Gene3D G3DSA:3.40.220.10 1 159 5.6E-51 T 23-04-2016 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 285 306 2.6E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 322 343 2.6E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 372 387 2.6E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 344 364 2.6E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 263 280 2.6E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 496 38.381 T 23-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 THIMO_RS11080 e3b81821c1c4f900a9975a0192d312f8 499 PANTHER PTHR11963 11 496 5.4E-212 T 23-04-2016 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 352 2.3E-106 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 357 36.818 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 SUPERFAMILY SSF53756 4 358 1.05E-120 T 23-04-2016 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 347 4.8E-36 T 23-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 142 2.1E-40 T 23-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 PANTHER PTHR21015 4 359 1.3E-123 T 23-04-2016 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 PANTHER PTHR21015:SF22 4 359 1.3E-123 T 23-04-2016 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 Gene3D G3DSA:3.40.50.2000 255 332 1.2E-4 T 23-04-2016 THIMO_RS14780 ad11617f34e04e1a0f8616111b08cd0d 359 Gene3D G3DSA:3.40.50.2000 3 196 5.7E-68 T 23-04-2016 THIMO_RS04375 88212eb2b2cfe971ff8f3066da45438a 269 PANTHER PTHR18952 42 269 1.3E-52 T 23-04-2016 IPR023561 Carbonic anhydrase, alpha-class THIMO_RS04375 88212eb2b2cfe971ff8f3066da45438a 269 Pfam PF00194 Eukaryotic-type carbonic anhydrase 46 266 3.3E-28 T 23-04-2016 IPR001148 Alpha carbonic anhydrase THIMO_RS04375 88212eb2b2cfe971ff8f3066da45438a 269 SMART SM01057 47 266 6.7E-57 T 23-04-2016 IPR001148 Alpha carbonic anhydrase THIMO_RS04375 88212eb2b2cfe971ff8f3066da45438a 269 SUPERFAMILY SSF51069 46 265 2.75E-55 T 23-04-2016 IPR001148 Alpha carbonic anhydrase THIMO_RS04375 88212eb2b2cfe971ff8f3066da45438a 269 Gene3D G3DSA:3.10.200.10 46 265 9.8E-51 T 23-04-2016 IPR001148 Alpha carbonic anhydrase THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 235 1.4E-63 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 Gene3D G3DSA:3.30.70.580 2 101 7.8E-34 T 23-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 PANTHER PTHR11142 1 248 1.2E-90 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 PANTHER PTHR11142:SF0 1 248 1.2E-90 T 23-04-2016 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 Pfam PF01416 tRNA pseudouridine synthase 139 241 3.2E-29 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 Pfam PF01416 tRNA pseudouridine synthase 3 99 1.2E-9 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 Gene3D G3DSA:3.30.70.660 103 238 3.7E-47 T 23-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 SUPERFAMILY SSF55120 2 247 3.02E-86 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 240 31.664 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS12675 ee302ee4796211a40b759b280b00906b 267 PIRSF PIRSF001430 1 256 6.2E-74 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SUPERFAMILY SSF55785 150 264 4.35E-21 T 23-04-2016 IPR000014 PAS domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SUPERFAMILY SSF55785 20 125 6.28E-11 T 23-04-2016 IPR000014 PAS domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SMART SM00267 256 430 1.2E-60 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SUPERFAMILY SSF55073 272 429 9.42E-51 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 Gene3D G3DSA:3.30.450.20 24 125 5.7E-12 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 Gene3D G3DSA:3.30.70.270 269 430 1.9E-57 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 Pfam PF08448 PAS fold 30 127 8.0E-11 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 PANTHER PTHR10799:SF750 300 429 2.1E-33 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 PANTHER PTHR10799:SF750 65 220 2.1E-33 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 PANTHER PTHR10799 300 429 2.1E-33 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 PANTHER PTHR10799 65 220 2.1E-33 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SMART SM00091 8 80 41.0 T 23-04-2016 IPR000014 PAS domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SMART SM00091 139 205 4.7E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 259 4.4E-23 T 23-04-2016 IPR000014 PAS domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 Gene3D G3DSA:3.30.450.20 139 254 9.1E-23 T 23-04-2016 THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 263 430 2.5E-54 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 Pfam PF00990 Diguanylate cyclase, GGDEF domain 267 426 5.9E-50 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 Pfam PF13426 PAS domain 150 255 1.4E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SMART SM00086 86 127 17.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS03685 e9c09facba3978c21be451d5089c8aad 431 SMART SM00086 216 256 0.069 T 23-04-2016 IPR001610 PAC motif THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 8 204 29.284 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 PANTHER PTHR10920 1 205 7.3E-106 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 PANTHER PTHR10920:SF20 1 205 7.3E-106 T 23-04-2016 THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 SUPERFAMILY SSF53335 27 204 1.42E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 Gene3D G3DSA:3.40.50.150 3 204 8.1E-65 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 Pfam PF01728 FtsJ-like methyltransferase 28 204 1.7E-55 T 23-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 THIMO_RS12205 c37baff3db6586dd12562aae13520b51 205 PIRSF PIRSF005461 1 205 1.4E-73 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:3.40.50.300 5 213 7.9E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50447 207 303 1.43E-29 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.281 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF52540 5 221 4.91E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PANTHER PTHR23115:SF151 1 395 8.4E-262 T 23-04-2016 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 1.7E-228 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 302 395 5.7E-47 T 23-04-2016 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.1E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 214 300 1.2E-35 T 23-04-2016 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.5E-34 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 PANTHER PTHR23115 1 395 8.4E-262 T 23-04-2016 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.5E-16 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.8E-61 T 23-04-2016 THIMO_RS13705 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50465 300 395 1.06E-36 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.4E-24 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:3.40.50.300 5 213 7.9E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50447 207 303 1.43E-29 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.281 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF52540 5 221 4.91E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PANTHER PTHR23115:SF151 1 395 8.4E-262 T 23-04-2016 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 1.7E-228 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 302 395 5.7E-47 T 23-04-2016 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.1E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 214 300 1.2E-35 T 23-04-2016 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.5E-34 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 PANTHER PTHR23115 1 395 8.4E-262 T 23-04-2016 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.5E-16 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.8E-61 T 23-04-2016 THIMO_RS13640 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50465 300 395 1.06E-36 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 PANTHER PTHR11751:SF354 10 395 2.6E-126 T 23-04-2016 THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 PANTHER PTHR11751 10 395 2.6E-126 T 23-04-2016 THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 Gene3D G3DSA:3.90.1150.10 289 395 3.3E-18 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 SUPERFAMILY SSF53383 2 394 2.64E-86 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 394 1.3E-195 T 23-04-2016 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 Pfam PF00155 Aminotransferase class I and II 32 386 4.7E-41 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS05770 ddde9fdb29502a659b29ca3812e9b845 398 Gene3D G3DSA:3.40.640.10 43 288 2.2E-63 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS08910 a697dc47e952937c711f681f9a7f6f2b 238 PANTHER PTHR13235 6 235 7.5E-100 T 23-04-2016 THIMO_RS08910 a697dc47e952937c711f681f9a7f6f2b 238 Pfam PF03167 Uracil DNA glycosylase superfamily 45 216 3.2E-5 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS08910 a697dc47e952937c711f681f9a7f6f2b 238 SUPERFAMILY SSF52141 3 235 9.81E-59 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS08910 a697dc47e952937c711f681f9a7f6f2b 238 Gene3D G3DSA:3.40.470.10 3 235 2.1E-96 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 Gene3D G3DSA:3.10.129.10 21 152 2.1E-49 T 23-04-2016 IPR029069 HotDog domain THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 PANTHER PTHR31793 11 153 4.7E-47 T 23-04-2016 THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 SUPERFAMILY SSF54637 19 152 1.55E-41 T 23-04-2016 IPR029069 HotDog domain THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 26 143 6.9E-30 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 PIRSF PIRSF003230 14 153 9.8E-46 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 PANTHER PTHR31793:SF9 11 153 4.7E-47 T 23-04-2016 THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 23 149 8.4E-50 T 23-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- THIMO_RS02715 1c12b4fe8447fb59b64d12baaded034b 153 Pfam PF03061 Thioesterase superfamily 38 123 3.7E-17 T 23-04-2016 IPR006683 Thioesterase domain THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 Pfam PF08269 Cache domain 37 331 1.4E-60 T 23-04-2016 IPR004010 Double Cache domain 2 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 PANTHER PTHR32089 316 443 3.9E-24 T 23-04-2016 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 SUPERFAMILY SSF158472 362 413 5.75E-13 T 23-04-2016 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 SMART SM01049 67 160 6.4E-23 T 23-04-2016 IPR033480 Single Cache domain 2 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 SMART SM01049 199 278 0.019 T 23-04-2016 IPR033480 Single Cache domain 2 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 Gene3D G3DSA:3.30.450.20 63 213 2.8E-38 T 23-04-2016 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 Gene3D G3DSA:3.30.450.20 219 331 1.5E-23 T 23-04-2016 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 PANTHER PTHR32089:SF1 316 443 3.9E-24 T 23-04-2016 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 Gene3D G3DSA:3.30.450.40 431 600 6.9E-11 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 Pfam PF00672 HAMP domain 343 410 1.0E-17 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 SMART SM00304 362 414 2.3E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS18185 2ba2ae58b81c5a6630729a6d5b4eb4cf 743 SUPERFAMILY SSF55781 435 596 3.71E-12 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS06460 443cf6047597d1cc818081831f0d1e4b 159 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 21 153 1.2E-34 T 23-04-2016 IPR005247 YbhB/YbcL THIMO_RS06460 443cf6047597d1cc818081831f0d1e4b 159 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 154 1.7E-34 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein THIMO_RS06460 443cf6047597d1cc818081831f0d1e4b 159 PANTHER PTHR30289 2 156 4.3E-45 T 23-04-2016 THIMO_RS06460 443cf6047597d1cc818081831f0d1e4b 159 Gene3D G3DSA:3.90.280.10 2 156 4.5E-50 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein THIMO_RS06460 443cf6047597d1cc818081831f0d1e4b 159 SUPERFAMILY SSF49777 2 148 1.83E-45 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein THIMO_RS06970 9e23f1b2a8478f6b3db6a96401161778 176 SMART SM00014 63 172 4.5E-12 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS06970 9e23f1b2a8478f6b3db6a96401161778 176 PANTHER PTHR14969 22 169 7.3E-24 T 23-04-2016 THIMO_RS06970 9e23f1b2a8478f6b3db6a96401161778 176 SUPERFAMILY SSF48317 20 175 6.67E-33 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS06970 9e23f1b2a8478f6b3db6a96401161778 176 Gene3D G3DSA:1.20.144.10 19 173 4.1E-35 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS06970 9e23f1b2a8478f6b3db6a96401161778 176 Pfam PF01569 PAP2 superfamily 68 170 8.0E-18 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 152 1.4E-20 T 23-04-2016 IPR000014 PAS domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 331 9.2E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 370 9.2E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 351 9.2E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 SUPERFAMILY SSF55785 24 146 9.6E-24 T 23-04-2016 IPR000014 PAS domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 Gene3D G3DSA:3.30.450.20 27 146 3.6E-25 T 23-04-2016 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 SUPERFAMILY SSF55874 259 371 1.2E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 Pfam PF08448 PAS fold 43 149 5.8E-19 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 284 372 3.8E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 PANTHER PTHR24421 137 375 2.4E-46 T 23-04-2016 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 Pfam PF07730 Histidine kinase 176 241 4.9E-10 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 Gene3D G3DSA:3.30.565.10 224 247 1.4E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 Gene3D G3DSA:3.30.565.10 279 372 1.4E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 SMART SM00387 281 373 4.6E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01790 f0b9407b148df5690d9e8faf61fc9ee1 382 SMART SM00091 35 101 0.0032 T 23-04-2016 IPR000014 PAS domain THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 SUPERFAMILY SSF51569 7 348 5.34E-132 T 23-04-2016 THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 3.6E-158 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 PANTHER PTHR21225 1 352 2.7E-211 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 Gene3D G3DSA:3.20.20.70 9 350 1.3E-151 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 PANTHER PTHR21225:SF7 1 352 2.7E-211 T 23-04-2016 THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 PIRSF PIRSF001361 1 352 6.4E-160 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS05790 5a1898edd771dd529ce4892ce28d2e6f 352 Pfam PF00793 DAHP synthetase I family 40 335 2.0E-96 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS10545 c4023e34f148e30988d9c5b541cddc03 90 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 52 2.9E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS10545 c4023e34f148e30988d9c5b541cddc03 90 PANTHER PTHR33713 1 90 6.9E-18 T 23-04-2016 THIMO_RS10545 c4023e34f148e30988d9c5b541cddc03 90 Gene3D G3DSA:3.40.1620.10 1 50 6.2E-7 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS10545 c4023e34f148e30988d9c5b541cddc03 90 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 69 2.2E-15 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS10545 c4023e34f148e30988d9c5b541cddc03 90 PANTHER PTHR33713:SF6 1 90 6.9E-18 T 23-04-2016 THIMO_RS10545 c4023e34f148e30988d9c5b541cddc03 90 SUPERFAMILY SSF143120 1 77 9.81E-19 T 23-04-2016 THIMO_RS12720 dcdb966ba72fd83a56f9e9c887d3f9cc 455 Gene3D G3DSA:2.60.120.260 255 409 9.5E-4 T 23-04-2016 IPR008979 Galactose-binding domain-like THIMO_RS12720 dcdb966ba72fd83a56f9e9c887d3f9cc 455 SUPERFAMILY SSF48452 39 144 1.92E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS12720 dcdb966ba72fd83a56f9e9c887d3f9cc 455 Gene3D G3DSA:1.25.40.10 39 151 1.9E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS01870 e45f5b6e5789df0862d80bb01f3bb124 328 Gene3D G3DSA:3.30.450.20 37 138 4.5E-9 T 23-04-2016 THIMO_RS01870 e45f5b6e5789df0862d80bb01f3bb124 328 SUPERFAMILY SSF103190 41 143 8.63E-9 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 67 636 34.592 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PANTHER PTHR11451:SF31 1 637 0.0 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF81271 3 61 7.19E-15 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.980.10 67 130 2.2E-41 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.980.10 189 225 2.2E-41 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF55681 245 528 1.09E-95 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.54.20 131 188 5.6E-22 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.40.50.800 533 637 1.1E-33 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF02824 TGS domain 4 61 3.3E-11 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.10.20.30 2 64 4.8E-21 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 466 494 8.0E-54 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 331 359 8.0E-54 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 509 522 8.0E-54 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 536 548 8.0E-54 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 364 387 8.0E-54 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF55186 64 243 4.06E-68 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 73 633 1.0E-217 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF03129 Anticodon binding domain 543 624 3.0E-19 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 325 531 1.0E-43 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 SMART SM00863 171 221 3.5E-25 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF52954 531 636 1.96E-30 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 PANTHER PTHR11451 1 637 0.0 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.930.10 244 532 2.2E-118 T 23-04-2016 THIMO_RS13475 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 171 221 2.7E-14 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 THIMO_RS10790 694775e3256238a70e0537ac57646840 270 PANTHER PTHR10108 1 141 6.5E-34 T 23-04-2016 THIMO_RS10790 694775e3256238a70e0537ac57646840 270 SUPERFAMILY SSF53335 7 215 1.84E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS10790 694775e3256238a70e0537ac57646840 270 Pfam PF13847 Methyltransferase domain 38 144 1.1E-23 T 23-04-2016 IPR025714 Methyltransferase domain THIMO_RS10790 694775e3256238a70e0537ac57646840 270 Gene3D G3DSA:3.40.50.150 5 198 9.1E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08270 bb67361e23625094df6f5986003d333b 260 PANTHER PTHR30336 1 255 2.3E-56 T 23-04-2016 THIMO_RS08270 bb67361e23625094df6f5986003d333b 260 Pfam PF02698 DUF218 domain 80 246 3.7E-34 T 23-04-2016 IPR003848 Domain of unknown function DUF218 THIMO_RS08270 bb67361e23625094df6f5986003d333b 260 Gene3D G3DSA:3.40.50.620 75 215 2.2E-33 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS08270 bb67361e23625094df6f5986003d333b 260 PANTHER PTHR30336:SF1 1 255 2.3E-56 T 23-04-2016 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 PANTHER PTHR34182 2 126 1.4E-31 T 23-04-2016 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 73 6.4E-28 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 3.6E-38 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 3.6E-38 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 3.6E-38 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 3.6E-38 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 THIMO_RS02780 06390de60a8da1c02ae9b958d24df747 143 Pfam PF03840 Preprotein translocase SecG subunit 4 72 3.3E-23 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 THIMO_RS02730 e98f18d2d98b3537169e7f30b0bfa649 422 Gene3D G3DSA:3.30.1150.10 308 419 1.5E-25 T 23-04-2016 THIMO_RS02730 e98f18d2d98b3537169e7f30b0bfa649 422 Pfam PF13103 TonB C terminal 333 416 7.2E-17 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS02730 e98f18d2d98b3537169e7f30b0bfa649 422 TIGRFAM TIGR02794 tolA_full: protein TolA 207 419 3.8E-36 T 23-04-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 THIMO_RS02730 e98f18d2d98b3537169e7f30b0bfa649 422 TIGRFAM TIGR02794 tolA_full: protein TolA 9 226 1.7E-23 T 23-04-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 THIMO_RS02730 e98f18d2d98b3537169e7f30b0bfa649 422 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 360 418 8.8E-8 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS02730 e98f18d2d98b3537169e7f30b0bfa649 422 SUPERFAMILY SSF74653 330 419 7.19E-17 T 23-04-2016 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 6.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 6.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 197 211 6.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 6.3E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 Pfam PF00561 alpha/beta hydrolase fold 20 140 4.1E-23 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 Gene3D G3DSA:3.40.50.1820 2 249 2.4E-54 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 PANTHER PTHR10992 3 250 1.5E-51 T 23-04-2016 THIMO_RS06905 34b5f6fa0e1ff872403a0e0f6476d451 251 SUPERFAMILY SSF53474 3 250 1.0E-55 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 11 723 0.0 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 52 65 7.9E-52 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 67 92 7.9E-52 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 26 48 7.9E-52 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 7.9E-52 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 478 504 7.9E-52 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.520.10 702 724 5.6E-53 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.520.10 434 578 5.6E-53 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.520.10 239 251 8.4E-77 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.520.10 47 201 8.4E-77 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 SUPERFAMILY SSF48113 17 431 1.62E-150 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Hamap MF_01961 Catalase-peroxidase [katG]. 7 724 40.042 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 ProSitePatterns PS00436 Peroxidases active site signature. 90 101 - T 23-04-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PANTHER PTHR30555:SF0 1 723 0.0 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 5.9E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 150 167 5.9E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 168 180 5.9E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 90 104 5.9E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 5.9E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.420.10 579 699 1.2E-43 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 PANTHER PTHR30555 1 723 0.0 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.420.10 310 409 1.5E-46 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.420.10 252 274 1.5E-46 T 23-04-2016 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Pfam PF00141 Peroxidase 73 397 1.3E-50 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 Pfam PF00141 Peroxidase 406 698 3.4E-37 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS16840 0c86a0f38e7eedbbb39774dd669d3c54 724 SUPERFAMILY SSF48113 432 723 1.25E-111 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 THIMO_RS13820 77f3df75809e4d688cea9722c52e893a 142 Pfam PF01797 Transposase IS200 like 12 85 3.7E-21 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13820 77f3df75809e4d688cea9722c52e893a 142 PANTHER PTHR33360:SF2 3 84 6.0E-25 T 23-04-2016 THIMO_RS13820 77f3df75809e4d688cea9722c52e893a 142 SUPERFAMILY SSF143422 1 85 1.05E-26 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13820 77f3df75809e4d688cea9722c52e893a 142 PANTHER PTHR33360 3 84 6.0E-25 T 23-04-2016 THIMO_RS13820 77f3df75809e4d688cea9722c52e893a 142 Gene3D G3DSA:3.30.70.1290 2 85 1.1E-27 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13820 77f3df75809e4d688cea9722c52e893a 142 SMART SM01321 11 100 4.5E-9 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 TIGRFAM TIGR01499 folC: bifunctional protein FolC 37 430 1.9E-93 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 PANTHER PTHR11136 18 442 3.3E-113 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 Gene3D G3DSA:3.90.190.20 300 432 9.8E-35 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 SUPERFAMILY SSF53244 299 431 2.2E-25 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 SUPERFAMILY SSF53623 16 297 5.89E-81 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 Gene3D G3DSA:3.40.1190.10 15 297 1.6E-90 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 Pfam PF08245 Mur ligase middle domain 58 274 5.8E-9 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 PIRSF PIRSF001563 12 436 9.8E-100 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 THIMO_RS12650 20615d205b30aa83b1f69a885100cd8d 444 PANTHER PTHR11136:SF0 18 442 3.3E-113 T 23-04-2016 THIMO_RS02755 75bd82e7b3679e83638feeb7e53f1e79 158 Pfam PF04248 Domain of unknown function (DUF427) 26 116 1.1E-24 T 23-04-2016 IPR007361 Domain of unknown function DUF427 THIMO_RS02755 75bd82e7b3679e83638feeb7e53f1e79 158 PANTHER PTHR34310:SF2 1 158 1.6E-50 T 23-04-2016 THIMO_RS02755 75bd82e7b3679e83638feeb7e53f1e79 158 PANTHER PTHR34310 1 158 1.6E-50 T 23-04-2016 THIMO_RS01225 00e1401e74b9c0078452a384a74c2a82 150 PANTHER PTHR24960 19 132 4.1E-20 T 23-04-2016 THIMO_RS01225 00e1401e74b9c0078452a384a74c2a82 150 Pfam PF02662 Methyl-viologen-reducing hydrogenase, delta subunit 19 141 3.3E-49 T 23-04-2016 IPR003813 Methyl-viologen-reducing hydrogenase, delta subunit GO:0015948|GO:0055114 THIMO_RS01225 00e1401e74b9c0078452a384a74c2a82 150 PANTHER PTHR24960:SF37 19 132 4.1E-20 T 23-04-2016 THIMO_RS06985 15c6afeb934050a163ca2cba86fdb9a3 255 PANTHER PTHR37323:SF1 13 252 3.9E-72 T 23-04-2016 THIMO_RS06985 15c6afeb934050a163ca2cba86fdb9a3 255 PANTHER PTHR37323 13 252 3.9E-72 T 23-04-2016 THIMO_RS06985 15c6afeb934050a163ca2cba86fdb9a3 255 SUPERFAMILY SSF55729 18 224 1.77E-39 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS06985 15c6afeb934050a163ca2cba86fdb9a3 255 Gene3D G3DSA:3.40.630.30 18 169 1.7E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS06985 15c6afeb934050a163ca2cba86fdb9a3 255 Pfam PF13444 Acetyltransferase (GNAT) domain 33 133 5.8E-32 T 23-04-2016 THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 176 186 - T 23-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 PANTHER PTHR10795 1 410 3.7E-63 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 137 148 - T 23-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 PRINTS PR00723 Subtilisin serine protease family (S8) signature 172 185 7.3E-15 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 PRINTS PR00723 Subtilisin serine protease family (S8) signature 334 350 7.3E-15 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 PRINTS PR00723 Subtilisin serine protease family (S8) signature 132 151 7.3E-15 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 Gene3D G3DSA:2.60.40.10 591 673 2.6E-5 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 335 345 - T 23-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 PANTHER PTHR10795:SF419 1 410 3.7E-63 T 23-04-2016 THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 SUPERFAMILY SSF52743 72 409 2.75E-79 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 SUPERFAMILY SSF49265 503 641 5.51E-7 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 Gene3D G3DSA:3.40.50.200 73 400 1.2E-86 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 Pfam PF00082 Subtilase family 135 391 1.6E-41 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 Gene3D G3DSA:2.60.40.10 416 491 1.8E-5 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS18350 10b90f3b5248d3dc3487b2c0bbe1b4dd 810 Gene3D G3DSA:2.60.40.10 501 570 2.9E-8 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 PANTHER PTHR18964:SF70 1 325 1.9E-93 T 23-04-2016 THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 Gene3D G3DSA:3.40.50.2000 204 359 1.1E-52 T 23-04-2016 THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 PANTHER PTHR18964 1 325 1.9E-93 T 23-04-2016 THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 Gene3D G3DSA:3.40.50.2000 3 203 2.5E-66 T 23-04-2016 THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 33 359 5.0E-98 T 23-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 3 358 1.9E-88 T 23-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 THIMO_RS04835 b76541a29b6830be7504ce1394cd749a 376 SUPERFAMILY SSF53756 3 361 7.46E-103 T 23-04-2016 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 PANTHER PTHR10277:SF45 8 361 1.2E-130 T 23-04-2016 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 Gene3D G3DSA:3.20.20.70 7 334 2.4E-102 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 SUPERFAMILY SSF51569 7 282 2.64E-80 T 23-04-2016 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 Pfam PF00682 HMGL-like 8 265 6.6E-81 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 15 31 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 PANTHER PTHR10277 8 361 1.2E-130 T 23-04-2016 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 194 207 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS15380 e150645cda88a4fb4da03decee3636e9 391 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 8 371 1.8E-158 T 23-04-2016 IPR013477 Homocitrate synthase NifV-type GO:0004410|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00690 Cation transporter/ATPase, N-terminus 56 122 4.8E-20 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:3.40.1110.10 366 586 8.0E-55 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 134 243 3.8E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 258 399 8.5E-25 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 651 761 2.9E-33 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF56784 534 786 1.19E-64 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF56784 374 394 1.19E-64 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81665 276 370 1.57E-123 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81665 54 166 1.57E-123 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81665 730 943 1.57E-123 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00689 Cation transporting ATPase, C-terminus 766 937 2.5E-42 T 23-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PANTHER PTHR24093:SF254 52 945 0.0 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 378 384 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81653 165 275 1.16E-28 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 680 699 4.9E-44 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 376 390 4.9E-44 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 601 611 4.9E-44 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 213 227 4.9E-44 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 579 590 4.9E-44 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 704 716 4.9E-44 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:1.20.1110.10 649 941 1.0E-113 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:1.20.1110.10 108 160 1.0E-113 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00122 E1-E2 ATPase 134 367 6.1E-68 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00702 haloacid dehalogenase-like hydrolase 374 694 1.5E-26 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81660 383 583 1.37E-51 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PANTHER PTHR24093 52 945 0.0 T 23-04-2016 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:2.70.150.10 161 275 8.6E-41 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:2.70.150.10 71 107 8.6E-41 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 SMART SM00831 55 128 7.6E-33 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 537 555 9.7E-18 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 652 668 9.7E-18 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 680 696 9.7E-18 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS08815 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 712 737 9.7E-18 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 2.9E-136 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 1.5E-145 T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 51.542 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 Gene3D G3DSA:3.20.20.210 3 349 1.2E-159 T 23-04-2016 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 PANTHER PTHR21091 1 349 2.2E-158 T 23-04-2016 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 PANTHER PTHR21091:SF2 1 349 2.2E-158 T 23-04-2016 THIMO_RS17180 f41cb1d6107de7ec1a329e0ecd26aa8f 354 SUPERFAMILY SSF51726 3 351 1.92E-127 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF50447 245 380 5.3E-22 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:2.40.30.10 294 382 1.6E-19 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF54980 587 677 3.07E-22 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 PANTHER PTHR23115 5 173 7.9E-189 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 PANTHER PTHR23115 285 678 7.9E-189 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 PANTHER PTHR23115 235 263 7.9E-189 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.40.50.300 5 266 2.0E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF14492 Elongation Factor G, domain II 389 461 3.0E-21 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF03764 Elongation factor G, domain IV 463 581 3.9E-40 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.30.230.10 468 583 1.2E-44 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SMART SM00889 464 582 2.0E-59 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF00009 Elongation factor Tu GTP binding domain 8 261 2.3E-34 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 PANTHER PTHR23115:SF98 5 173 7.9E-189 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 PANTHER PTHR23115:SF98 285 678 7.9E-189 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 PANTHER PTHR23115:SF98 235 263 7.9E-189 T 23-04-2016 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 150 9.8E-12 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.30.70.240 584 670 7.9E-25 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF52540 4 262 3.83E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SMART SM00838 584 672 1.2E-25 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF00679 Elongation factor G C-terminus 585 671 4.1E-25 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF54980 389 466 5.04E-18 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF54211 463 581 5.56E-40 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS13310 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.30.70.870 389 463 1.2E-23 T 23-04-2016 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 Gene3D G3DSA:3.60.40.10 19 262 3.2E-57 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 Pfam PF13672 Protein phosphatase 2C 34 221 1.1E-15 T 23-04-2016 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 SMART SM00332 9 260 1.5E-17 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 SUPERFAMILY SSF81606 20 262 9.29E-55 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 SMART SM00331 26 262 1.8E-20 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 PANTHER PTHR13832 20 262 4.0E-49 T 23-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 THIMO_RS07095 0d736b962a867ee3bddbde8f32a1ef60 266 PANTHER PTHR13832:SF278 20 262 4.0E-49 T 23-04-2016 THIMO_RS07835 0b04b9263d43c791e8868bad001d70c6 355 PANTHER PTHR36837:SF1 3 354 7.0E-150 T 23-04-2016 THIMO_RS07835 0b04b9263d43c791e8868bad001d70c6 355 SUPERFAMILY SSF53474 64 352 9.47E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS07835 0b04b9263d43c791e8868bad001d70c6 355 PANTHER PTHR36837 3 354 7.0E-150 T 23-04-2016 THIMO_RS07835 0b04b9263d43c791e8868bad001d70c6 355 Pfam PF00561 alpha/beta hydrolase fold 68 333 8.4E-37 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS07835 0b04b9263d43c791e8868bad001d70c6 355 Gene3D G3DSA:3.40.50.1820 48 354 2.4E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS07835 0b04b9263d43c791e8868bad001d70c6 355 TIGRFAM TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 5 354 1.2E-177 T 23-04-2016 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00917 THIMO_RS04725 120299c226114d4a8cfe439ae4edc74d 318 PANTHER PTHR10108 21 283 7.8E-15 T 23-04-2016 THIMO_RS04725 120299c226114d4a8cfe439ae4edc74d 318 SUPERFAMILY SSF53335 61 246 6.19E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04725 120299c226114d4a8cfe439ae4edc74d 318 Gene3D G3DSA:3.40.50.150 81 236 3.8E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04725 120299c226114d4a8cfe439ae4edc74d 318 PANTHER PTHR10108:SF705 21 283 7.8E-15 T 23-04-2016 THIMO_RS04725 120299c226114d4a8cfe439ae4edc74d 318 Pfam PF08241 Methyltransferase domain 88 177 1.3E-11 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 Gene3D G3DSA:1.10.10.10 156 226 1.1E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 SUPERFAMILY SSF52172 6 148 1.17E-15 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 2.2E-15 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 SMART SM00448 5 115 2.9E-4 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 PANTHER PTHR26402:SF292 5 225 1.7E-27 T 23-04-2016 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 PANTHER PTHR26402 5 225 1.7E-27 T 23-04-2016 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 Pfam PF00072 Response regulator receiver domain 7 115 3.6E-8 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 SMART SM00862 149 225 5.1E-14 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 SUPERFAMILY SSF46894 138 226 1.45E-15 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS10125 fc2cf9838227d91376a98e379712aa2b 232 Gene3D G3DSA:3.40.50.2300 5 155 3.7E-16 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Gene3D G3DSA:3.40.50.620 224 400 9.1E-58 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 SUPERFAMILY SSF52317 7 238 1.14E-56 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Pfam PF02540 NAD synthase 217 260 1.2E-6 T 23-04-2016 IPR022310 NAD/GMP synthase THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 8 526 55.147 T 23-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 SUPERFAMILY SSF52402 198 419 2.21E-57 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 SUPERFAMILY SSF54810 406 526 1.31E-48 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PANTHER PTHR11922:SF2 1 523 9.1E-282 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 526 5.1E-147 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PANTHER PTHR11922 1 523 9.1E-282 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 11 205 3.9E-76 T 23-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Pfam PF00117 Glutamine amidotransferase class-I 13 200 7.7E-40 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Pfam PF00958 GMP synthase C terminal domain 434 525 1.2E-42 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 82 93 7.1E-6 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 178 191 7.1E-6 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 55 64 7.1E-6 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Gene3D G3DSA:3.30.300.10 402 526 3.8E-51 T 23-04-2016 THIMO_RS17085 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Gene3D G3DSA:3.40.50.880 5 223 1.5E-59 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS14370 4b0246c2ebd6d666ecf3c33f3e89a72f 476 PIRSF PIRSF016565 20 473 4.8E-118 T 23-04-2016 IPR026036 PucC protein THIMO_RS14370 4b0246c2ebd6d666ecf3c33f3e89a72f 476 PANTHER PTHR23538 13 452 5.8E-67 T 23-04-2016 THIMO_RS14370 4b0246c2ebd6d666ecf3c33f3e89a72f 476 Pfam PF03209 PUCC protein 56 457 5.4E-128 T 23-04-2016 IPR004896 PucC-related THIMO_RS14370 4b0246c2ebd6d666ecf3c33f3e89a72f 476 SUPERFAMILY SSF103473 36 449 2.49E-26 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS14370 4b0246c2ebd6d666ecf3c33f3e89a72f 476 Gene3D G3DSA:1.20.1250.20 34 235 2.3E-10 T 23-04-2016 THIMO_RS14370 4b0246c2ebd6d666ecf3c33f3e89a72f 476 Gene3D G3DSA:1.20.1250.20 263 459 6.2E-5 T 23-04-2016 THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 3 61 18.806 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 Pfam PF00327 Ribosomal protein L30p/L7e 8 57 4.1E-17 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 PANTHER PTHR15892 8 62 3.9E-22 T 23-04-2016 THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 SUPERFAMILY SSF55129 6 60 3.79E-19 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 7 60 1.2E-20 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 Gene3D G3DSA:3.30.1390.20 6 61 1.4E-25 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain THIMO_RS13540 2db35464f456608bc3df63df36ad2a3b 63 PIRSF PIRSF002211 1 63 1.4E-24 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 Gene3D G3DSA:1.10.760.10 103 203 9.3E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 Gene3D G3DSA:1.10.760.10 37 56 9.3E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 SUPERFAMILY SSF46626 99 191 4.14E-26 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 SUPERFAMILY SSF46626 29 63 4.14E-26 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 Gene3D G3DSA:1.10.760.10 204 293 2.0E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PIRSF PIRSF000006 2 296 6.3E-61 T 23-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 11 295 3.5E-59 T 23-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PRINTS PR00605 Class IC cytochrome C signature 118 129 4.0E-5 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PRINTS PR00605 Class IC cytochrome C signature 160 182 4.0E-5 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 9 55 1.0E-19 T 23-04-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal UniPathway: UPA00705 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 SUPERFAMILY SSF46626 192 294 2.1E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PANTHER PTHR33751 1 53 1.2E-37 T 23-04-2016 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PANTHER PTHR33751 74 295 1.2E-37 T 23-04-2016 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PANTHER PTHR33751:SF1 1 53 1.2E-37 T 23-04-2016 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 PANTHER PTHR33751:SF1 74 295 1.2E-37 T 23-04-2016 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 111 182 9.0E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06420 4d089590cfa59b296676af81f421df35 296 Pfam PF00034 Cytochrome c 197 292 6.7E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 Gene3D G3DSA:1.10.760.10 73 151 1.3E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 163 240 8.8E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 Gene3D G3DSA:1.10.760.10 163 241 8.4E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 SUPERFAMILY SSF46626 161 242 8.17E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 PANTHER PTHR33751 76 248 1.9E-21 T 23-04-2016 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 Pfam PF00034 Cytochrome c 74 149 1.3E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12380 44dedeb866708270df81a4dc156f68f1 248 SUPERFAMILY SSF46626 67 150 6.8E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 Pfam PF09335 SNARE associated Golgi protein 39 162 3.3E-16 T 23-04-2016 IPR032816 SNARE associated Golgi protein THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 Gene3D G3DSA:1.20.144.10 275 444 1.1E-8 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 PANTHER PTHR30353:SF5 1 305 3.4E-60 T 23-04-2016 THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 PANTHER PTHR30353:SF5 358 453 3.4E-60 T 23-04-2016 THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 SUPERFAMILY SSF48317 249 440 1.22E-19 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 Pfam PF14067 LssY C-terminus 497 611 6.8E-12 T 23-04-2016 IPR025902 LssY-like C-terminal domain THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 PANTHER PTHR30353 1 305 3.4E-60 T 23-04-2016 IPR032818 DedA family THIMO_RS00320 c26c70729ab3636fae0f01c874106d8e 667 PANTHER PTHR30353 358 453 3.4E-60 T 23-04-2016 IPR032818 DedA family THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 SUPERFAMILY SSF49493 124 220 3.27E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 23-04-2016 IPR018253 DnaJ domain, conserved site THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 Gene3D G3DSA:1.10.287.110 1 113 3.7E-32 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 Gene3D G3DSA:2.60.260.20 119 207 2.6E-21 T 23-04-2016 THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 SUPERFAMILY SSF46565 1 72 5.89E-32 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 Gene3D G3DSA:2.60.260.20 211 285 1.2E-16 T 23-04-2016 THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 SUPERFAMILY SSF49493 214 296 1.57E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 PRINTS PR00625 DnaJ domain signature 25 40 8.2E-24 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 PRINTS PR00625 DnaJ domain signature 61 80 8.2E-24 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 PRINTS PR00625 DnaJ domain signature 41 61 8.2E-24 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 PRINTS PR00625 DnaJ domain signature 7 25 8.2E-24 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 Pfam PF00226 DnaJ domain 5 66 2.0E-26 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 SMART SM00271 4 61 6.5E-30 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 PANTHER PTHR24078:SF190 1 302 2.3E-84 T 23-04-2016 THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 PANTHER PTHR24078 1 302 2.3E-84 T 23-04-2016 THIMO_RS09285 5011c70cd63d6e6b2e7cadb02eeec2c1 313 Pfam PF01556 DnaJ C terminal domain 133 285 3.8E-34 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal THIMO_RS07520 6d509aed6f19ff8773bc80656f88c357 106 Gene3D G3DSA:1.10.10.60 8 94 7.4E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07520 6d509aed6f19ff8773bc80656f88c357 106 SUPERFAMILY SSF46689 4 98 3.05E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07520 6d509aed6f19ff8773bc80656f88c357 106 Pfam PF01527 Transposase 3 86 9.5E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS07520 6d509aed6f19ff8773bc80656f88c357 106 PANTHER PTHR33215:SF3 1 106 1.2E-14 T 23-04-2016 THIMO_RS07520 6d509aed6f19ff8773bc80656f88c357 106 PANTHER PTHR33215 1 106 1.2E-14 T 23-04-2016 THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 SUPERFAMILY SSF52540 22 245 1.9E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 PANTHER PTHR22942 23 316 2.8E-44 T 23-04-2016 THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 Gene3D G3DSA:3.40.50.300 251 495 7.8E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 Gene3D G3DSA:3.40.50.300 15 246 3.8E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 SUPERFAMILY SSF52540 259 484 8.74E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 Pfam PF06745 KaiC 22 241 3.2E-50 T 23-04-2016 IPR014774 KaiC-like domain THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 Pfam PF06745 KaiC 261 481 1.0E-34 T 23-04-2016 IPR014774 KaiC-like domain THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 PIRSF PIRSF039117 9 515 3.1E-133 T 23-04-2016 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 PRINTS PR01874 DNA repair protein radA signature 413 441 2.4E-7 T 23-04-2016 THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 PRINTS PR01874 DNA repair protein radA signature 312 329 2.4E-7 T 23-04-2016 THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 PRINTS PR01874 DNA repair protein radA signature 270 298 2.4E-7 T 23-04-2016 THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 SMART SM00382 278 442 0.075 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 SMART SM00382 38 208 3.0 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS04555 ed57bf683a728d6dc962dc88eaeaf6d0 571 PANTHER PTHR22942:SF43 23 316 2.8E-44 T 23-04-2016 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 180 319 7.1E-53 T 23-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 Gene3D G3DSA:1.10.1040.10 184 326 4.7E-58 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PIRSF PIRSF000114 2 332 2.1E-103 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 4 322 37.471 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 188 209 - T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 160 5.4E-49 T 23-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 2.3E-48 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 173 197 2.3E-48 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 198 222 2.3E-48 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 133 153 2.3E-48 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 238 255 2.3E-48 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 2.3E-48 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 Gene3D G3DSA:3.40.50.720 4 183 4.5E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 SUPERFAMILY SSF51735 5 178 8.13E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 PANTHER PTHR11728 5 332 3.5E-135 T 23-04-2016 THIMO_RS17455 4351d61df89b517a645e9183297f043d 333 SUPERFAMILY SSF48179 179 331 4.59E-57 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 Gene3D G3DSA:3.40.50.300 176 351 2.2E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 Gene3D G3DSA:1.10.8.60 352 425 2.9E-18 T 23-04-2016 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 393 402 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 Pfam PF02954 Bacterial regulatory protein, Fis family 450 480 6.7E-6 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 SUPERFAMILY SSF46689 393 493 3.05E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 PANTHER PTHR32071 153 504 1.4E-129 T 23-04-2016 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 Gene3D G3DSA:1.10.10.60 443 493 4.8E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 SMART SM00382 199 342 1.2E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 Pfam PF00158 Sigma-54 interaction domain 181 343 3.7E-65 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 SUPERFAMILY SSF52540 181 422 1.23E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04290 5fb9a44cde3599deb71b42244bee15ab 504 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 203 216 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF00571 CBS domain 151 222 5.9E-5 T 23-04-2016 IPR000644 CBS domain THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF00571 CBS domain 241 284 3.0E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF00027 Cyclic nucleotide-binding domain 37 118 1.7E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 PANTHER PTHR11911 142 450 1.7E-22 T 23-04-2016 THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 PANTHER PTHR11911:SF110 142 450 1.7E-22 T 23-04-2016 THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 SMART SM00100 17 134 1.5E-4 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF03445 Putative nucleotidyltransferase DUF294 312 448 1.4E-45 T 23-04-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 484 628 3.8E-43 T 23-04-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Gene3D G3DSA:3.10.580.10 150 285 8.3E-25 T 23-04-2016 THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 Gene3D G3DSA:2.60.120.10 3 133 1.0E-19 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 SMART SM00116 158 222 2.6 T 23-04-2016 IPR000644 CBS domain THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 SMART SM00116 239 286 1.6E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 SUPERFAMILY SSF54631 144 285 2.14E-21 T 23-04-2016 THIMO_RS17400 1fb9480afbc52b61d8078f5e79cfc432 633 SUPERFAMILY SSF51206 5 126 8.25E-25 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 PANTHER PTHR11601:SF17 18 451 3.0E-178 T 23-04-2016 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 SUPERFAMILY SSF82649 449 580 6.28E-41 T 23-04-2016 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 SUPERFAMILY SSF53383 16 416 5.84E-123 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 Gene3D G3DSA:3.90.1010.10 449 581 2.8E-47 T 23-04-2016 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 Gene3D G3DSA:3.90.1150.10 296 414 8.5E-22 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 Gene3D G3DSA:3.40.640.10 48 295 4.5E-86 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 19 415 9.5E-166 T 23-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 Pfam PF02657 Fe-S metabolism associated domain 454 576 2.6E-42 T 23-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 Pfam PF00266 Aminotransferase class-V 37 408 3.9E-139 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS11590 6e4c391bc6fc0f8745636111d100f7a5 587 PANTHER PTHR11601 18 451 3.0E-178 T 23-04-2016 THIMO_RS08485 688106b0ad7b0cad5c4671a981a45cd7 467 Pfam PF15611 EH_Signature domain 212 456 1.0E-40 T 23-04-2016 IPR028943 EH signature domain THIMO_RS08240 a953960b543518b97aaede13cc6bc68f 117 Pfam PF09086 Domain of unknown function (DUF1924) 23 114 6.0E-37 T 23-04-2016 IPR015170 Protein of unknown function DUF1924 THIMO_RS08240 a953960b543518b97aaede13cc6bc68f 117 SUPERFAMILY SSF46626 16 115 1.72E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS08240 a953960b543518b97aaede13cc6bc68f 117 Gene3D G3DSA:1.10.760.10 17 116 3.2E-39 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 Pfam PF00664 ABC transporter transmembrane region 66 319 9.3E-23 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 PANTHER PTHR24221 17 601 7.0E-277 T 23-04-2016 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 Gene3D G3DSA:1.20.1560.10 22 345 4.5E-46 T 23-04-2016 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 SUPERFAMILY SSF52540 360 601 3.03E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 Pfam PF00005 ABC transporter 383 531 1.6E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 Gene3D G3DSA:3.40.50.300 367 595 8.6E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 SMART SM00382 392 577 1.8E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 SUPERFAMILY SSF90123 18 344 7.85E-49 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS10380 b362f87cfcf3ebf3830efac7638fbac4 603 PANTHER PTHR24221:SF233 17 601 7.0E-277 T 23-04-2016 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 Pfam PF01743 Poly A polymerase head domain 13 141 1.2E-36 T 23-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 PANTHER PTHR13734:SF47 1 272 4.4E-105 T 23-04-2016 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 1 400 6.8E-152 T 23-04-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 PANTHER PTHR13734 1 272 4.4E-105 T 23-04-2016 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 Gene3D G3DSA:3.30.460.10 1 140 1.4E-46 T 23-04-2016 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 1 402 34.052 T 23-04-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 Gene3D G3DSA:1.10.3090.10 141 376 2.4E-44 T 23-04-2016 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 Pfam PF12626 Polymerase A arginine-rich C-terminus 285 400 1.6E-42 T 23-04-2016 IPR025866 Polymerase A arginine-rich C-terminal domain THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 169 231 1.3E-19 T 23-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 SUPERFAMILY SSF81301 2 137 3.05E-37 T 23-04-2016 THIMO_RS16695 041909cded4c17890589f82c0558ee13 411 SUPERFAMILY SSF81891 141 377 4.45E-46 T 23-04-2016 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 SUPERFAMILY SSF54966 4 141 2.62E-53 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 PANTHER PTHR23321 18 448 9.0E-285 T 23-04-2016 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 17 137 1.7E-40 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 SUPERFAMILY SSF51649 142 466 2.09E-141 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 2 468 58.505 T 23-04-2016 IPR020888 Ribulose bisphosphate carboxylase, large subunit GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 147 455 6.1E-129 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 Gene3D G3DSA:3.30.70.150 17 141 4.8E-57 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 PANTHER PTHR23321:SF31 18 448 9.0E-285 T 23-04-2016 THIMO_RS14015 cbfe28d9d221967ae6597e7ccae84e12 471 Gene3D G3DSA:3.20.20.110 142 455 8.0E-172 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS00255 fba08114e5986f0c54ca06ac734bae4d 207 SUPERFAMILY SSF55718 30 123 6.67E-7 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS00255 fba08114e5986f0c54ca06ac734bae4d 207 Pfam PF02036 SCP-2 sterol transfer family 19 114 1.3E-12 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS00255 fba08114e5986f0c54ca06ac734bae4d 207 PANTHER PTHR38693 1 206 1.8E-46 T 23-04-2016 THIMO_RS00255 fba08114e5986f0c54ca06ac734bae4d 207 PANTHER PTHR38693:SF1 1 206 1.8E-46 T 23-04-2016 THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 PANTHER PTHR30128:SF18 64 169 5.8E-46 T 23-04-2016 THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 Pfam PF00691 OmpA family 67 157 1.5E-20 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 PANTHER PTHR30128 64 169 5.8E-46 T 23-04-2016 THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 SUPERFAMILY SSF103088 55 166 2.09E-33 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 Gene3D G3DSA:3.30.1330.60 58 167 2.4E-32 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 66 167 1.3E-40 T 23-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 PRINTS PR01021 OMPA domain signature 113 129 1.6E-15 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 PRINTS PR01021 OMPA domain signature 68 90 1.6E-15 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS02740 20472e15426805cbce0af8ecdb198d5b 171 PRINTS PR01021 OMPA domain signature 98 113 1.6E-15 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS06380 e39e1d8534663ce94cfd94589a708672 262 Gene3D G3DSA:3.10.350.10 26 70 4.4E-10 T 23-04-2016 IPR018392 LysM domain THIMO_RS06380 e39e1d8534663ce94cfd94589a708672 262 SUPERFAMILY SSF51261 30 258 5.23E-38 T 23-04-2016 IPR011055 Duplicated hybrid motif THIMO_RS06380 e39e1d8534663ce94cfd94589a708672 262 Pfam PF01551 Peptidase family M23 161 254 4.3E-25 T 23-04-2016 IPR016047 Peptidase M23 THIMO_RS06380 e39e1d8534663ce94cfd94589a708672 262 Gene3D G3DSA:2.70.70.10 119 259 1.8E-34 T 23-04-2016 THIMO_RS06380 e39e1d8534663ce94cfd94589a708672 262 PANTHER PTHR21666 107 261 5.6E-30 T 23-04-2016 THIMO_RS06380 e39e1d8534663ce94cfd94589a708672 262 Pfam PF01476 LysM domain 27 65 9.2E-6 T 23-04-2016 IPR018392 LysM domain THIMO_RS14550 c9f6106a4d2097268653af39257e316d 131 Pfam PF08660 Oligosaccharide biosynthesis protein Alg14 like 44 121 1.0E-12 T 23-04-2016 IPR013969 Oligosaccharide biosynthesis protein Alg14-like THIMO_RS14550 c9f6106a4d2097268653af39257e316d 131 SUPERFAMILY SSF53756 16 88 1.81E-5 T 23-04-2016 THIMO_RS14550 c9f6106a4d2097268653af39257e316d 131 PANTHER PTHR12154:SF4 48 131 2.0E-12 T 23-04-2016 THIMO_RS14550 c9f6106a4d2097268653af39257e316d 131 PANTHER PTHR12154 48 131 2.0E-12 T 23-04-2016 IPR013969 Oligosaccharide biosynthesis protein Alg14-like THIMO_RS14550 c9f6106a4d2097268653af39257e316d 131 Gene3D G3DSA:3.40.50.2000 39 118 8.0E-10 T 23-04-2016 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 Pfam PF01979 Amidohydrolase family 14 308 2.1E-16 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 Gene3D G3DSA:3.20.20.140 3 345 6.9E-139 T 23-04-2016 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 PIRSF PIRSF001237 3 347 3.6E-140 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 SUPERFAMILY SSF51556 6 345 1.91E-145 T 23-04-2016 IPR032466 Metal-dependent hydrolase THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 PANTHER PTHR11647 1 347 9.5E-166 T 23-04-2016 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 ProSitePatterns PS00482 Dihydroorotase signature 1. 14 22 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 PANTHER PTHR11647:SF59 1 347 9.5E-166 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 Hamap MF_00219 Dihydroorotase [pyrC]. 5 346 44.413 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 ProSitePatterns PS00483 Dihydroorotase signature 2. 248 259 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS10915 740bdacad4d77520c2eaee71d559408b 347 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 6 345 1.4E-138 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SMART SM00838 604 683 3.1E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115:SF66 8 177 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115:SF66 250 281 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115:SF66 300 509 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115:SF66 536 683 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF54980 605 682 1.37E-17 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 78 88 8.1E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 130 139 8.1E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 94 105 8.1E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 58 66 8.1E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 12 25 8.1E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF52540 7 276 6.0E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF00009 Elongation factor Tu GTP binding domain 9 276 7.9E-58 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.30.230.10 480 606 5.2E-12 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115 8 177 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115 250 281 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115 300 509 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 PANTHER PTHR23115 536 683 7.2E-197 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.30.70.240 608 682 6.1E-22 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.30.70.870 402 475 2.6E-26 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF54211 475 603 9.86E-10 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF14492 Elongation Factor G, domain II 402 473 1.6E-25 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF03764 Elongation factor G, domain IV 475 601 3.0E-6 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SMART SM00889 476 602 0.0013 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 175 2.1E-28 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:2.40.30.10 300 399 1.5E-18 T 23-04-2016 THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.40.50.300 6 282 4.6E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF54980 402 477 5.04E-21 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF00679 Elongation factor G C-terminus 605 681 6.8E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF50447 245 270 5.81E-22 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS08040 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF50447 299 398 5.81E-22 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 PANTHER PTHR11839:SF9 11 174 4.2E-55 T 23-04-2016 THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 PRINTS PR00502 NUDIX hydrolase family signature 83 98 1.6E-5 T 23-04-2016 IPR020476 NUDIX hydrolase THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 PRINTS PR00502 NUDIX hydrolase family signature 69 83 1.6E-5 T 23-04-2016 IPR020476 NUDIX hydrolase THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 Gene3D G3DSA:3.90.79.10 6 173 5.2E-54 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 Pfam PF00293 NUDIX domain 42 149 2.4E-21 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 PANTHER PTHR11839 11 174 4.2E-55 T 23-04-2016 THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 SUPERFAMILY SSF55811 8 172 2.84E-50 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS15705 b7ed798002472cbb7cd15685dc79b301 175 ProSitePatterns PS00893 Nudix box signature. 74 95 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 THIMO_RS13730 271a37ea735702db1fc4595312d9bbe0 463 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 32 437 3.6E-29 T 23-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) THIMO_RS13730 271a37ea735702db1fc4595312d9bbe0 463 Gene3D G3DSA:2.40.160.60 25 463 9.0E-88 T 23-04-2016 THIMO_RS13730 271a37ea735702db1fc4595312d9bbe0 463 SUPERFAMILY SSF56935 26 142 3.05E-47 T 23-04-2016 THIMO_RS13730 271a37ea735702db1fc4595312d9bbe0 463 SUPERFAMILY SSF56935 180 442 3.05E-47 T 23-04-2016 THIMO_RS13730 271a37ea735702db1fc4595312d9bbe0 463 PANTHER PTHR35093 188 463 1.1E-22 T 23-04-2016 THIMO_RS13730 271a37ea735702db1fc4595312d9bbe0 463 PANTHER PTHR35093 5 161 1.1E-22 T 23-04-2016 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 Pfam PF00561 alpha/beta hydrolase fold 22 168 1.3E-22 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 Gene3D G3DSA:3.40.50.1820 2 256 3.5E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 3.6E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 3.6E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 3.6E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 203 217 3.6E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 PANTHER PTHR10992 4 257 5.0E-44 T 23-04-2016 THIMO_RS06900 3eb5959ca047671ce85bff88b43cc896 273 SUPERFAMILY SSF53474 3 256 8.17E-51 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 Pfam PF00072 Response regulator receiver domain 7 118 4.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 4.5E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 SMART SM00421 151 208 5.3E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 SUPERFAMILY SSF52172 4 134 5.98E-28 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 PANTHER PTHR26402 5 210 6.0E-62 T 23-04-2016 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 3.2E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 3.2E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 3.2E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 Gene3D G3DSA:1.10.10.10 159 213 1.7E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 Gene3D G3DSA:3.40.50.2300 2 158 8.8E-32 T 23-04-2016 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 SUPERFAMILY SSF46894 146 213 1.63E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 SMART SM00448 5 118 3.2E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS12405 839a4a2afdc9d5a9325e5f9a74ce7899 216 PANTHER PTHR26402:SF458 5 210 6.0E-62 T 23-04-2016 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 9.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 9.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 77 90 9.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 Pfam PF12697 Alpha/beta hydrolase family 14 243 4.4E-18 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 PANTHER PTHR10992 9 255 8.8E-64 T 23-04-2016 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 9 252 2.3E-73 T 23-04-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519|UniPathway: UPA00078 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 Gene3D G3DSA:3.40.50.1820 2 256 4.1E-51 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 SUPERFAMILY SSF53474 2 255 5.23E-47 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 PANTHER PTHR10992:SF812 9 255 8.8E-64 T 23-04-2016 THIMO_RS14415 b3a0f67e8032f1956fa737d0eed62026 258 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 3 254 39.102 T 23-04-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519|UniPathway: UPA00078 THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 Gene3D G3DSA:1.10.1060.10 9 103 8.8E-21 T 23-04-2016 THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 Pfam PF02754 Cysteine-rich domain 302 385 1.4E-11 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 Pfam PF02754 Cysteine-rich domain 174 254 1.9E-11 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 SUPERFAMILY SSF54862 20 118 5.44E-20 T 23-04-2016 THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 PIRSF PIRSF000139 5 402 3.1E-109 T 23-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 PANTHER PTHR32479 14 388 6.1E-113 T 23-04-2016 THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 PANTHER PTHR32479:SF2 14 388 6.1E-113 T 23-04-2016 THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS09185 ac61e291447f40d3027a1925b8cbd3fe 403 Pfam PF12838 4Fe-4S dicluster domain 24 89 2.8E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 PANTHER PTHR33692 7 173 1.9E-46 T 23-04-2016 THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 10 172 1.3E-44 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 9 173 22.67 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 Pfam PF01782 RimM N-terminal domain 12 95 1.4E-22 T 23-04-2016 IPR002676 RimM protein GO:0006364 THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 SUPERFAMILY SSF50346 104 173 1.57E-15 T 23-04-2016 IPR011033 PRC-barrel-like THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 Gene3D G3DSA:2.30.30.240 104 173 2.3E-22 T 23-04-2016 THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 Gene3D G3DSA:2.40.30.60 6 98 3.7E-29 T 23-04-2016 IPR002676 RimM protein GO:0006364 THIMO_RS10205 b535bea0b2e50da6badb848f5c051d04 173 SUPERFAMILY SSF50447 9 98 7.42E-21 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 SUPERFAMILY SSF68923 11 216 2.79E-81 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 254 269 - T 23-04-2016 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 Gene3D G3DSA:3.40.449.10 23 215 4.7E-78 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 SUPERFAMILY SSF53795 217 532 2.98E-132 T 23-04-2016 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 PIRSF PIRSF006294 6 533 1.9E-227 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 PANTHER PTHR30031 15 532 3.0E-289 T 23-04-2016 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 PANTHER PTHR30031:SF0 15 532 3.0E-289 T 23-04-2016 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 Gene3D G3DSA:3.90.228.20 217 279 1.6E-121 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 Gene3D G3DSA:3.90.228.20 341 531 1.6E-121 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 17 533 52.744 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 13 532 1.0E-211 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 THIMO_RS10920 52653aa099e1236d9ad3aa71e4842836 533 Pfam PF01293 Phosphoenolpyruvate carboxykinase 23 486 2.8E-216 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 PANTHER PTHR10000:SF20 1 263 8.7E-83 T 23-04-2016 THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 Gene3D G3DSA:3.30.1240.10 99 176 8.2E-19 T 23-04-2016 THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 259 3.2E-49 T 23-04-2016 IPR000150 Cof protein GO:0016787 THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 Gene3D G3DSA:3.40.50.1000 1 72 5.9E-49 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 Gene3D G3DSA:3.40.50.1000 177 263 5.9E-49 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 259 1.9E-51 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 SUPERFAMILY SSF56784 1 263 1.85E-61 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 ProSitePatterns PS01229 Hypothetical cof family signature 2. 211 233 - T 23-04-2016 THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 230 3.5E-25 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 THIMO_RS17230 068ccf21ea2e6924075c9b11725378b7 263 PANTHER PTHR10000 1 263 8.7E-83 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 Gene3D G3DSA:3.60.20.10 1 224 2.0E-70 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 Gene3D G3DSA:3.40.50.620 438 588 6.7E-80 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 Gene3D G3DSA:3.40.50.620 225 384 6.7E-80 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 Pfam PF00733 Asparagine synthase 243 588 5.4E-82 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 PANTHER PTHR11772:SF10 435 542 4.6E-151 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 PANTHER PTHR11772:SF10 2 389 4.6E-151 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 PANTHER PTHR11772 435 542 4.6E-151 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 PANTHER PTHR11772 2 389 4.6E-151 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 590 2.2E-282 T 23-04-2016 IPR017535 Asparagine synthase family amidotransferase THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 SUPERFAMILY SSF52402 443 570 1.61E-70 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 SUPERFAMILY SSF52402 234 388 1.61E-70 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 521 3.7E-126 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 PIRSF PIRSF001589 1 593 6.0E-194 T 23-04-2016 THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 SUPERFAMILY SSF56235 1 225 4.72E-63 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS15875 cfca925912dae46a25bf668355fbfe3f 593 Pfam PF13537 Glutamine amidotransferase domain 47 167 4.0E-43 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 SMART SM00382 164 308 1.2E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 SUPERFAMILY SSF52540 144 386 2.49E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 Pfam PF00158 Sigma-54 interaction domain 144 310 3.0E-65 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 Gene3D G3DSA:3.40.50.300 143 316 5.8E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 PANTHER PTHR32071 102 448 7.5E-135 T 23-04-2016 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 Gene3D G3DSA:1.10.8.60 317 386 1.1E-17 T 23-04-2016 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 Gene3D G3DSA:1.10.10.60 391 444 1.0E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 Pfam PF02954 Bacterial regulatory protein, Fis family 404 442 3.7E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS14650 aa18486ca868d640596be9197d9557a7 448 SUPERFAMILY SSF46689 357 445 9.73E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF81301 213 384 1.96E-63 T 23-04-2016 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:3.30.460.10 198 345 3.1E-49 T 23-04-2016 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF109604 18 212 3.45E-41 T 23-04-2016 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF13291 ACT domain 661 738 1.1E-20 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF55021 663 738 9.16E-15 T 23-04-2016 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 SMART SM00954 256 366 5.0E-65 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 55 738 6.1E-189 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF02824 TGS domain 408 467 1.9E-21 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF13328 HD domain 41 197 2.5E-40 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF81271 402 467 1.44E-19 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 PANTHER PTHR21262 58 740 2.4E-287 T 23-04-2016 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 PANTHER PTHR21262:SF5 58 740 2.4E-287 T 23-04-2016 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:3.10.20.30 408 470 1.6E-22 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF04607 Region found in RelA / SpoT proteins 256 366 9.1E-37 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 THIMO_RS07445 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:3.30.70.260 663 737 5.6E-20 T 23-04-2016 THIMO_RS16355 73a2c6ea3cc18f8321643d34e0031ca8 426 Pfam PF14701 Glucanotransferase of human glycogen debranching enzyme 10 107 6.6E-18 T 23-04-2016 IPR032792 Glycogen debranching enzyme, glucanotransferase domain KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 THIMO_RS16355 73a2c6ea3cc18f8321643d34e0031ca8 426 Gene3D G3DSA:3.20.20.80 3 328 3.9E-52 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS16355 73a2c6ea3cc18f8321643d34e0031ca8 426 PANTHER PTHR10357 20 374 4.9E-23 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS16355 73a2c6ea3cc18f8321643d34e0031ca8 426 SMART SM00642 5 325 2.9E-6 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS16355 73a2c6ea3cc18f8321643d34e0031ca8 426 SUPERFAMILY SSF51445 2 331 2.28E-61 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS05500 86a750b4dce1c772a951a29a4590ad28 204 Gene3D G3DSA:3.40.50.1110 35 198 5.8E-36 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS05500 86a750b4dce1c772a951a29a4590ad28 204 SUPERFAMILY SSF52266 35 199 1.68E-37 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS05500 86a750b4dce1c772a951a29a4590ad28 204 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 38 189 5.1E-24 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS05500 86a750b4dce1c772a951a29a4590ad28 204 PANTHER PTHR30383 36 201 1.8E-30 T 23-04-2016 THIMO_RS06965 eb25d6c9116e7dbb8b41f52dfd6d897e 166 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 1.9E-33 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS06965 eb25d6c9116e7dbb8b41f52dfd6d897e 166 PANTHER PTHR20941 1 156 2.9E-60 T 23-04-2016 THIMO_RS06965 eb25d6c9116e7dbb8b41f52dfd6d897e 166 Gene3D G3DSA:3.30.70.560 3 152 8.7E-50 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS06965 eb25d6c9116e7dbb8b41f52dfd6d897e 166 SUPERFAMILY SSF55083 1 153 2.75E-51 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS06965 eb25d6c9116e7dbb8b41f52dfd6d897e 166 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 1.7E-42 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS15525 7145db55e4e40ec3a6a33c8319cefb13 129 Gene3D G3DSA:2.60.40.1470 6 128 5.0E-46 T 23-04-2016 IPR007474 ApaG domain THIMO_RS15525 7145db55e4e40ec3a6a33c8319cefb13 129 Pfam PF04379 Protein of unknown function (DUF525) 22 105 1.2E-34 T 23-04-2016 IPR007474 ApaG domain THIMO_RS15525 7145db55e4e40ec3a6a33c8319cefb13 129 PANTHER PTHR14289 5 124 1.0E-54 T 23-04-2016 THIMO_RS15525 7145db55e4e40ec3a6a33c8319cefb13 129 SUPERFAMILY SSF110069 7 128 1.02E-47 T 23-04-2016 IPR007474 ApaG domain THIMO_RS15525 7145db55e4e40ec3a6a33c8319cefb13 129 Hamap MF_00791 Protein ApaG [apaG]. 4 129 33.065 T 23-04-2016 IPR023065 Uncharacterised protein family ApaG THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 Gene3D G3DSA:1.10.40.30 393 438 2.4E-16 T 23-04-2016 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 Pfam PF00206 Lyase 2 317 6.6E-90 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PANTHER PTHR11444:SF22 3 460 7.3E-197 T 23-04-2016 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00145 Argininosuccinate lyase family signature 292 308 5.5E-7 T 23-04-2016 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 5.5E-7 T 23-04-2016 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00145 Argininosuccinate lyase family signature 109 131 5.5E-7 T 23-04-2016 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PANTHER PTHR11444 3 460 7.3E-197 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 292 308 9.7E-33 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 9.7E-33 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 110 128 9.7E-33 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 246 273 9.7E-33 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 Gene3D G3DSA:1.20.200.10 115 392 6.5E-81 T 23-04-2016 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 Pfam PF10415 Fumarase C C-terminus 383 435 2.3E-15 T 23-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 ProSitePatterns PS00163 Fumarate lyases signature. 292 301 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 Gene3D G3DSA:1.10.275.10 3 114 6.7E-41 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal THIMO_RS05900 614fa2d513457247f086a48d0beee22e 460 SUPERFAMILY SSF48557 3 437 3.3E-123 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 243 59.411 T 23-04-2016 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 240 8.2E-32 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 SUPERFAMILY SSF88659 170 243 3.18E-19 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PANTHER PTHR30385:SF7 16 243 1.5E-63 T 23-04-2016 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 Gene3D G3DSA:1.10.601.10 16 82 4.0E-13 T 23-04-2016 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 Gene3D G3DSA:1.10.10.10 92 136 2.8E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 18 240 2.5E-74 T 23-04-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 Pfam PF04542 Sigma-70 region 2 18 90 3.8E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PIRSF PIRSF000770 4 248 3.1E-38 T 23-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PRINTS PR00046 Major sigma-70 factor signature 45 58 1.8E-9 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PRINTS PR00046 Major sigma-70 factor signature 193 205 1.8E-9 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PRINTS PR00046 Major sigma-70 factor signature 210 225 1.8E-9 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PRINTS PR00046 Major sigma-70 factor signature 225 236 1.8E-9 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 PANTHER PTHR30385 16 243 1.5E-63 T 23-04-2016 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 SUPERFAMILY SSF88946 15 90 4.32E-22 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 SUPERFAMILY SSF88659 92 154 2.29E-10 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 Gene3D G3DSA:1.10.10.10 181 242 1.8E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01380 80f29662e5396e315a359ef0e602f3d9 248 Pfam PF04545 Sigma-70, region 4 189 238 2.6E-17 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 SUPERFAMILY SSF53335 34 223 1.47E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 SUPERFAMILY SSF53335 280 316 1.47E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 190 313 5.5E-43 T 23-04-2016 IPR019257 Histidine-specific methyltransferase, SAM-dependent THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 Gene3D G3DSA:3.40.50.150 248 308 6.7E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 Gene3D G3DSA:3.40.50.150 53 198 6.7E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 PANTHER PTHR30468 11 318 7.9E-82 T 23-04-2016 THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 PANTHER PTHR30468:SF6 11 318 7.9E-82 T 23-04-2016 THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 17 314 8.6E-119 T 23-04-2016 IPR017804 Methyltransferase EgtD-like THIMO_RS00035 71b91095c09578a58dc628999bbc7236 324 PIRSF PIRSF018005 3 318 3.4E-110 T 23-04-2016 IPR017804 Methyltransferase EgtD-like THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PIRSF PIRSF000194 10 175 8.3E-61 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PANTHER PTHR22778 14 172 9.4E-37 T 23-04-2016 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 SUPERFAMILY SSF53597 14 173 6.68E-53 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 26 36 2.0E-15 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 104 118 2.0E-15 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 40 48 2.0E-15 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 53 64 2.0E-15 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 26 48 - T 23-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 Pfam PF00186 Dihydrofolate reductase 15 172 4.6E-57 T 23-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 PANTHER PTHR22778:SF16 14 172 9.4E-37 T 23-04-2016 THIMO_RS05130 2fd52101e9fe7b688190f23e608e8550 181 Gene3D G3DSA:3.40.430.10 13 173 9.4E-56 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain THIMO_RS13065 e91329431116f9b226c85276581e216a 308 Gene3D G3DSA:3.40.50.720 1 234 9.8E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13065 e91329431116f9b226c85276581e216a 308 PANTHER PTHR12126:SF1 1 305 1.1E-68 T 23-04-2016 THIMO_RS13065 e91329431116f9b226c85276581e216a 308 PANTHER PTHR12126 1 305 1.1E-68 T 23-04-2016 THIMO_RS13065 e91329431116f9b226c85276581e216a 308 Pfam PF13460 NAD(P)H-binding 7 160 6.6E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13065 e91329431116f9b226c85276581e216a 308 SUPERFAMILY SSF51735 1 295 6.99E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Gene3D G3DSA:3.20.20.140 74 392 1.2E-83 T 23-04-2016 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 PANTHER PTHR11647 1 429 1.4E-134 T 23-04-2016 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 26 428 5.0E-94 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 SUPERFAMILY SSF51338 7 59 7.04E-26 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 SUPERFAMILY SSF51338 372 428 7.04E-26 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Pfam PF01979 Amidohydrolase family 56 426 4.2E-15 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 SUPERFAMILY SSF51556 60 368 1.76E-84 T 23-04-2016 IPR032466 Metal-dependent hydrolase THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Gene3D G3DSA:2.30.40.10 7 73 1.5E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 PANTHER PTHR11647:SF70 1 429 1.4E-134 T 23-04-2016 THIMO_RS12245 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Hamap MF_00220_B Dihydroorotase [pyrC]. 6 430 33.153 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS16880 bbcf265eafb697fdb9df6ba2df447de3 259 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 7 240 8.1E-43 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 THIMO_RS16880 bbcf265eafb697fdb9df6ba2df447de3 259 PANTHER PTHR36925 4 251 2.2E-65 T 23-04-2016 THIMO_RS16880 bbcf265eafb697fdb9df6ba2df447de3 259 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 7 245 7.9E-68 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 Pfam PF01883 Domain of unknown function DUF59 6 79 8.0E-16 T 23-04-2016 IPR002744 Domain of unknown function DUF59 THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 339 3.3E-106 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 341 38.662 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 SUPERFAMILY SSF117916 4 86 5.56E-17 T 23-04-2016 THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 PANTHER PTHR23264 1 347 1.9E-169 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 Gene3D G3DSA:3.40.50.300 89 339 1.1E-110 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 SUPERFAMILY SSF52540 89 323 3.85E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 PANTHER PTHR23264:SF19 1 347 1.9E-169 T 23-04-2016 THIMO_RS04570 87495bec7c7d7af517aed428daaf30f8 363 ProSitePatterns PS01215 Mrp family signature. 204 220 - T 23-04-2016 IPR000808 Mrp, conserved site GO:0005524 THIMO_RS09660 9f6663ee1708c78f3b4edd3f2c86b40f 279 PANTHER PTHR38133:SF1 1 278 1.8E-61 T 23-04-2016 THIMO_RS09660 9f6663ee1708c78f3b4edd3f2c86b40f 279 Pfam PF04434 SWIM zinc finger 131 152 4.0E-6 T 23-04-2016 IPR007527 Zinc finger, SWIM-type GO:0008270 THIMO_RS09660 9f6663ee1708c78f3b4edd3f2c86b40f 279 PANTHER PTHR38133 1 278 1.8E-61 T 23-04-2016 THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 SUPERFAMILY SSF52096 226 285 1.79E-26 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 SUPERFAMILY SSF52096 88 195 1.79E-26 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Pfam PF08496 Peptidase family S49 N-terminal 3 144 2.2E-41 T 23-04-2016 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 PANTHER PTHR33209:SF2 1 323 1.2E-140 T 23-04-2016 THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 PANTHER PTHR33209 1 323 1.2E-140 T 23-04-2016 THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Pfam PF01343 Peptidase family S49 148 295 6.9E-42 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Gene3D G3DSA:3.90.226.10 83 191 3.9E-27 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS00920 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Gene3D G3DSA:3.90.226.10 257 298 3.9E-27 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 PANTHER PTHR10359:SF18 1 209 9.2E-86 T 23-04-2016 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.2E-7 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 Gene3D G3DSA:1.10.1670.10 123 208 3.4E-35 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.4E-20 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 23-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.0E-83 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 9.8E-5 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 SMART SM00525 186 206 4.7E-4 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 PIRSF PIRSF001435 1 211 2.6E-49 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 PANTHER PTHR10359 1 209 9.2E-86 T 23-04-2016 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.907 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 Gene3D G3DSA:1.10.340.30 23 122 2.1E-35 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 SMART SM00478 38 185 2.1E-57 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 THIMO_RS08635 5dcf26625026e5a7bf0b4d000174a069 219 SUPERFAMILY SSF48150 3 207 2.04E-73 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 THIMO_RS04105 4d5591d9794fdb84ad2864016f1ab033 213 Pfam PF13632 Glycosyl transferase family group 2 56 176 1.6E-6 T 23-04-2016 IPR001173 Glycosyltransferase 2-like THIMO_RS04105 4d5591d9794fdb84ad2864016f1ab033 213 SUPERFAMILY SSF53448 34 180 2.25E-21 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS04105 4d5591d9794fdb84ad2864016f1ab033 213 PANTHER PTHR10859:SF92 35 161 8.5E-19 T 23-04-2016 THIMO_RS04105 4d5591d9794fdb84ad2864016f1ab033 213 PANTHER PTHR10859 35 161 8.5E-19 T 23-04-2016 THIMO_RS04105 4d5591d9794fdb84ad2864016f1ab033 213 Gene3D G3DSA:3.90.550.10 37 163 6.4E-15 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 Pfam PF00069 Protein kinase domain 65 264 9.4E-33 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 Gene3D G3DSA:1.10.510.10 162 312 1.9E-35 T 23-04-2016 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 PANTHER PTHR24362 387 518 2.4E-57 T 23-04-2016 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 PANTHER PTHR24362 54 357 2.4E-57 T 23-04-2016 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 Gene3D G3DSA:3.30.200.20 59 161 3.6E-12 T 23-04-2016 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 SUPERFAMILY SSF56112 57 314 3.51E-55 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 71 95 - T 23-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 SMART SM00220 65 314 1.2E-32 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 180 192 - T 23-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 PANTHER PTHR24362:SF160 387 518 2.4E-57 T 23-04-2016 THIMO_RS07340 bd92fa96d6b101bcad1fe17baa524632 566 PANTHER PTHR24362:SF160 54 357 2.4E-57 T 23-04-2016 THIMO_RS09090 14bacd9b13e9e5607f3a3106ee3f124a 205 SMART SM00867 31 200 4.4E-14 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS09090 14bacd9b13e9e5607f3a3106ee3f124a 205 PIRSF PIRSF029811 7 202 4.6E-63 T 23-04-2016 IPR027016 Uncharacterised protein with YceI domain THIMO_RS09090 14bacd9b13e9e5607f3a3106ee3f124a 205 SUPERFAMILY SSF101874 30 202 2.62E-20 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS09090 14bacd9b13e9e5607f3a3106ee3f124a 205 Pfam PF04264 YceI-like domain 32 199 1.0E-11 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS09090 14bacd9b13e9e5607f3a3106ee3f124a 205 Gene3D G3DSA:2.40.128.110 29 202 4.5E-13 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SMART SM00345 22 80 6.5E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Gene3D G3DSA:1.10.10.10 15 80 8.6E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SUPERFAMILY SSF48008 87 222 3.66E-27 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Gene3D G3DSA:1.20.120.530 86 227 3.4E-29 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 PANTHER PTHR11751 20 106 8.1E-43 T 23-04-2016 THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SUPERFAMILY SSF46785 15 109 2.32E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Pfam PF07729 FCD domain 90 216 5.7E-26 T 23-04-2016 IPR011711 GntR, C-terminal THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 3.0E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 6.7E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 6.7E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 PANTHER PTHR11751:SF426 20 106 8.1E-43 T 23-04-2016 THIMO_RS12790 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SMART SM00895 90 217 7.2E-26 T 23-04-2016 IPR011711 GntR, C-terminal THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 PANTHER PTHR19211 1 553 0.0 T 23-04-2016 THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 6.0E-303 T 23-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 Gene3D G3DSA:3.40.50.300 10 105 5.7E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 Gene3D G3DSA:3.40.50.300 141 286 5.7E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 Gene3D G3DSA:3.40.50.300 323 542 1.7E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 PANTHER PTHR19211:SF7 1 553 0.0 T 23-04-2016 THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 Pfam PF12848 ABC transporter 230 303 4.4E-11 T 23-04-2016 IPR032781 ABC-transporter extension domain THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 SUPERFAMILY SSF52540 300 530 1.14E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 Pfam PF00005 ABC transporter 22 191 8.4E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 Pfam PF00005 ABC transporter 340 473 2.1E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 SUPERFAMILY SSF52540 12 244 3.65E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 SMART SM00382 31 236 2.2E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09605 9ebb148b932f2889ac88913808a23f15 555 SMART SM00382 348 526 5.2E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 Gene3D G3DSA:3.40.50.2300 1 119 8.1E-35 T 23-04-2016 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 SUPERFAMILY SSF46894 141 210 3.74E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 SMART SM00421 147 204 1.6E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 SUPERFAMILY SSF52172 1 127 1.85E-33 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 1.1E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 Pfam PF00072 Response regulator receiver domain 4 116 2.2E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 Gene3D G3DSA:1.10.10.10 120 211 1.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 4.0E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 4.0E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 4.0E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 SMART SM00448 2 116 3.1E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 PANTHER PTHR26402 2 210 6.3E-66 T 23-04-2016 THIMO_RS12525 6536100cc1b7c62bedba8ccb7aba363c 214 PANTHER PTHR26402:SF506 2 210 6.3E-66 T 23-04-2016 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 335 5.6E-128 T 23-04-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 Gene3D G3DSA:1.10.1040.10 186 329 1.8E-34 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 111 136 2.1E-14 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 23 2.1E-14 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 58 87 2.1E-14 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 152 1.6E-40 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PANTHER PTHR11811:SF28 1 212 6.2E-156 T 23-04-2016 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PANTHER PTHR11811:SF28 234 335 6.2E-156 T 23-04-2016 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PANTHER PTHR11811 1 212 6.2E-156 T 23-04-2016 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 PANTHER PTHR11811 234 335 6.2E-156 T 23-04-2016 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 Gene3D G3DSA:3.40.50.720 1 185 3.4E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 184 216 1.5E-9 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 SUPERFAMILY SSF51735 1 156 2.27E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 SUPERFAMILY SSF48179 182 334 1.02E-36 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS14455 b02764c3b539f74314725da75fcf70cb 338 SMART SM01350 184 335 7.9E-6 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 473 641 1.0E-41 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 SUPERFAMILY SSF141868 659 906 6.54E-92 T 23-04-2016 IPR001633 EAL domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 SMART SM00052 653 899 1.8E-117 T 23-04-2016 IPR001633 EAL domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 SUPERFAMILY SSF55073 480 645 1.57E-44 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 352 470 6.5E-23 T 23-04-2016 IPR000014 PAS domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 SMART SM00091 356 422 4.9E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 PANTHER PTHR33121 603 902 3.4E-78 T 23-04-2016 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 PANTHER PTHR33121 201 214 3.4E-78 T 23-04-2016 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 Pfam PF00989 PAS fold 356 458 6.2E-13 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 PANTHER PTHR33121:SF13 603 902 3.4E-78 T 23-04-2016 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 PANTHER PTHR33121:SF13 201 214 3.4E-78 T 23-04-2016 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 Gene3D G3DSA:3.30.70.270 476 650 8.9E-53 T 23-04-2016 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 Pfam PF00990 Diguanylate cyclase, GGDEF domain 475 638 2.9E-43 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 SUPERFAMILY SSF55785 341 462 9.25E-27 T 23-04-2016 IPR000014 PAS domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 Gene3D G3DSA:3.30.450.20 347 462 5.7E-31 T 23-04-2016 THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 Pfam PF00563 EAL domain 659 894 7.5E-74 T 23-04-2016 IPR001633 EAL domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 Gene3D G3DSA:3.20.20.450 657 902 2.3E-97 T 23-04-2016 IPR001633 EAL domain THIMO_RS18435 4789017e8bc596f5c334f0707de5a9fb 917 SMART SM00267 464 643 3.8E-56 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS16215 f3c35b3d28909d98f5c743e8aa2572a0 1029 Pfam PF04851 Type III restriction enzyme, res subunit 163 372 8.3E-13 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 THIMO_RS16215 f3c35b3d28909d98f5c743e8aa2572a0 1029 Gene3D G3DSA:3.40.91.30 889 969 1.4E-6 T 23-04-2016 IPR011578 Restriction endonuclease, FokI, C-terminal/endonuclease I, core GO:0003677|GO:0004536 THIMO_RS16215 f3c35b3d28909d98f5c743e8aa2572a0 1029 SUPERFAMILY SSF52540 255 374 9.64E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16215 f3c35b3d28909d98f5c743e8aa2572a0 1029 SUPERFAMILY SSF52540 171 225 9.64E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16215 f3c35b3d28909d98f5c743e8aa2572a0 1029 SUPERFAMILY SSF52540 446 501 9.64E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16215 f3c35b3d28909d98f5c743e8aa2572a0 1029 SUPERFAMILY SSF52540 573 654 9.64E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 SMART SM00490 261 342 3.8E-33 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 Gene3D G3DSA:3.40.50.300 8 214 4.8E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 Pfam PF00271 Helicase conserved C-terminal domain 234 342 3.1E-28 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 Pfam PF00270 DEAD/DEAH box helicase 32 196 1.8E-46 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 3 561 43.691 T 23-04-2016 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 Gene3D G3DSA:3.40.50.300 215 377 6.4E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 SMART SM00487 27 225 3.7E-62 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 Pfam PF03880 DbpA RNA binding domain 490 558 1.6E-22 T 23-04-2016 IPR005580 DbpA, RNA-binding domain THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 SUPERFAMILY SSF52540 77 363 5.88E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 PANTHER PTHR24031 8 484 6.7E-219 T 23-04-2016 THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 PANTHER PTHR24031 517 605 6.7E-219 T 23-04-2016 THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 PANTHER PTHR24031:SF261 8 484 6.7E-219 T 23-04-2016 THIMO_RS10220 b54242692a56e25b22ebb0a0f9333205 613 PANTHER PTHR24031:SF261 517 605 6.7E-219 T 23-04-2016 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 TIGRFAM TIGR00874 talAB: transaldolase 3 314 3.6E-146 T 23-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 PANTHER PTHR10683 1 312 1.3E-185 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 Pfam PF00923 Transaldolase 13 311 2.2E-93 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 Hamap MF_00492 Transaldolase [tal]. 1 318 49.085 T 23-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 SUPERFAMILY SSF51569 1 313 2.83E-108 T 23-04-2016 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 Gene3D G3DSA:3.20.20.70 1 313 2.5E-123 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS07775 467f1692a014226bd3f01a80a2b022f0 321 PANTHER PTHR10683:SF18 1 312 1.3E-185 T 23-04-2016 THIMO_RS07425 38c361c40da025d119d91d4ff9cf8c0e 125 SUPERFAMILY SSF69721 7 99 1.83E-21 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS07425 38c361c40da025d119d91d4ff9cf8c0e 125 PANTHER PTHR37010 13 113 2.1E-12 T 23-04-2016 THIMO_RS07425 38c361c40da025d119d91d4ff9cf8c0e 125 PANTHER PTHR37010:SF1 13 113 2.1E-12 T 23-04-2016 THIMO_RS07425 38c361c40da025d119d91d4ff9cf8c0e 125 Pfam PF04358 DsrC like protein 11 98 1.1E-13 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS07425 38c361c40da025d119d91d4ff9cf8c0e 125 Gene3D G3DSA:1.10.10.370 43 98 1.5E-8 T 23-04-2016 THIMO_RS07425 38c361c40da025d119d91d4ff9cf8c0e 125 Gene3D G3DSA:3.30.1420.10 13 42 7.0E-5 T 23-04-2016 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 Gene3D G3DSA:1.10.10.10 125 221 4.7E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 PANTHER PTHR26402 1 221 5.9E-92 T 23-04-2016 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 Gene3D G3DSA:3.40.50.2300 1 124 1.1E-35 T 23-04-2016 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 2.2E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 SMART SM00862 145 220 1.1E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 SMART SM00448 1 112 3.3E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 SUPERFAMILY SSF52172 1 172 6.64E-38 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 PANTHER PTHR26402:SF600 1 221 5.9E-92 T 23-04-2016 THIMO_RS15190 9b30deeaf294017ec7db67e9fb2ecb40 224 Pfam PF00072 Response regulator receiver domain 3 112 7.3E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02150 12f3420cf9ae475ea23aa6e54e539155 139 Pfam PF01894 Uncharacterised protein family UPF0047 18 135 2.4E-39 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS02150 12f3420cf9ae475ea23aa6e54e539155 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 137 7.2E-42 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS02150 12f3420cf9ae475ea23aa6e54e539155 139 PANTHER PTHR30615 3 139 5.8E-63 T 23-04-2016 THIMO_RS02150 12f3420cf9ae475ea23aa6e54e539155 139 PIRSF PIRSF004681 1 138 2.8E-48 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS02150 12f3420cf9ae475ea23aa6e54e539155 139 SUPERFAMILY SSF111038 3 137 1.44E-47 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS02150 12f3420cf9ae475ea23aa6e54e539155 139 Gene3D G3DSA:2.60.120.460 3 137 1.6E-54 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:1.10.730.10 379 534 1.7E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF52374 4 140 3.52E-103 T 23-04-2016 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF52374 175 385 3.52E-103 T 23-04-2016 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF50249 576 680 1.96E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:2.40.50.140 574 681 1.4E-38 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:3.40.50.620 182 378 4.6E-86 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:3.40.50.620 5 143 4.6E-86 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 25 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF57770 141 175 1.44E-11 T 23-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 534 1.3E-174 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PANTHER PTHR11946 1 636 3.0E-233 T 23-04-2016 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PANTHER PTHR11946:SF86 1 636 3.0E-233 T 23-04-2016 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 3.1E-24 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 3.1E-24 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 3.1E-24 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 3.1E-24 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 290 305 3.1E-24 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 3.1E-24 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Pfam PF09334 tRNA synthetases class I (M) 7 395 1.5E-154 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Pfam PF01588 Putative tRNA binding domain 586 678 6.5E-22 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:2.20.28.20 144 175 6.3E-18 T 23-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 Hamap MF_00098 Methionine--tRNA ligase [metG]. 5 545 39.912 T 23-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF47323 389 547 2.17E-39 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04575 56c1792dfcd309ff4e2130d7292738f6 681 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 564 681 4.9E-41 T 23-04-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 THIMO_RS01145 6a85dcc8a92fc310615cb58bfa481365 466 SUPERFAMILY SSF52467 297 466 1.87E-75 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS01145 6a85dcc8a92fc310615cb58bfa481365 466 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 463 4.8E-192 T 23-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 THIMO_RS01145 6a85dcc8a92fc310615cb58bfa481365 466 PANTHER PTHR10160 4 466 1.0E-241 T 23-04-2016 THIMO_RS01145 6a85dcc8a92fc310615cb58bfa481365 466 PIRSF PIRSF000204 1 466 4.3E-211 T 23-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 THIMO_RS01145 6a85dcc8a92fc310615cb58bfa481365 466 Gene3D G3DSA:3.40.50.1220 294 465 6.7E-87 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 PANTHER PTHR23416 1 236 3.8E-94 T 23-04-2016 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 Pfam PF06426 Serine acetyltransferase, N-terminal 3 35 4.5E-5 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 165 1.3E-73 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 SUPERFAMILY SSF51161 2 172 6.24E-54 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 Gene3D G3DSA:2.160.10.10 59 213 3.6E-35 T 23-04-2016 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 PANTHER PTHR23416:SF55 1 236 3.8E-94 T 23-04-2016 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 Gene3D G3DSA:1.10.3130.10 1 58 1.2E-27 T 23-04-2016 THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 73 108 3.6E-4 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS05070 60c011623ec38e10c3ba36670087952f 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 151 1.3E-7 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS00755 066b2f251a88e22e19b031ce4bb997a6 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 81 7.3E-7 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS00755 066b2f251a88e22e19b031ce4bb997a6 107 SUPERFAMILY SSF89360 1 93 1.18E-13 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS00755 066b2f251a88e22e19b031ce4bb997a6 107 Gene3D G3DSA:2.60.300.12 1 93 1.9E-13 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031:SF122 17 223 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031 17 223 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 SMART SM00490 298 378 4.3E-13 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 SUPERFAMILY SSF52540 252 382 2.24E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 SUPERFAMILY SSF52540 27 201 2.24E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 Gene3D G3DSA:3.40.50.300 273 390 1.9E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 SMART SM00382 30 220 0.0081 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 Pfam PF00271 Helicase conserved C-terminal domain 277 378 1.2E-13 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 Pfam PF00270 DEAD/DEAH box helicase 18 199 2.6E-25 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 Gene3D G3DSA:3.40.50.300 3 215 7.6E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 Pfam PF08494 DEAD/H associated 638 825 1.1E-64 T 23-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 SMART SM00487 13 228 5.2E-33 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031 893 958 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031 260 400 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031 422 442 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031:SF122 893 958 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031:SF122 260 400 4.6E-70 T 23-04-2016 THIMO_RS07600 b2391fecee599bebe5a871bab3b72957 1476 PANTHER PTHR24031:SF122 422 442 4.6E-70 T 23-04-2016 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 Gene3D G3DSA:3.30.160.20 191 268 1.8E-37 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 SUPERFAMILY SSF75620 3 325 7.85E-129 T 23-04-2016 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 SMART SM00937 48 158 1.8E-54 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 Pfam PF00472 RF-1 domain 192 300 9.3E-40 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 PANTHER PTHR11075 2 326 3.8E-154 T 23-04-2016 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 208 224 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 Gene3D G3DSA:1.20.58.410 2 79 8.8E-21 T 23-04-2016 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 328 36.538 T 23-04-2016 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 326 9.9E-152 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 PANTHER PTHR11075:SF6 2 326 3.8E-154 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 THIMO_RS09360 429565df293757e4faa2cfca4b8b95a5 328 Pfam PF03462 PCRF domain 3 183 9.6E-52 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 PANTHER PTHR35177:SF2 1 69 7.1E-18 T 23-04-2016 THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 69 1.5E-20 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 PANTHER PTHR35177 1 69 7.1E-18 T 23-04-2016 THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 58 70 3.5E-17 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 19 35 3.5E-17 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 40 56 3.5E-17 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 3.5E-17 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 SUPERFAMILY SSF159127 1 71 1.27E-21 T 23-04-2016 THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 23-04-2016 IPR019812 Hydrogenase assembly chaperone, conserved site THIMO_RS15560 5343188aba0d838e26ec0a9595527f6c 83 Pfam PF01455 HupF/HypC family 1 67 2.3E-24 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 13 619 51.195 T 23-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 PANTHER PTHR10887 116 478 2.0E-65 T 23-04-2016 THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 PANTHER PTHR10887 548 601 2.0E-65 T 23-04-2016 THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 619 9.3E-156 T 23-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Pfam PF13538 UvrD-like helicase C-terminal domain 548 594 2.1E-14 T 23-04-2016 IPR027785 UvrD-like helicase C-terminal domain THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 SUPERFAMILY SSF52540 11 380 1.05E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 171 310 1.1E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 PANTHER PTHR10887:SF284 116 478 2.0E-65 T 23-04-2016 THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 PANTHER PTHR10887:SF284 548 601 2.0E-65 T 23-04-2016 THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 311 324 4.5E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 536 604 4.5E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 374 400 4.5E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 435 481 4.5E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 SUPERFAMILY SSF52540 451 619 1.0E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 SUPERFAMILY SSF52540 295 335 1.0E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 SUPERFAMILY SSF52540 367 398 1.0E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11055 2b528817a75bcd41963f5144dcc25f01 631 Pfam PF13604 AAA domain 173 328 2.5E-30 T 23-04-2016 THIMO_RS06400 0d7d6a08f43e83367ffc37202e8bd552 1010 Pfam PF08357 SEFIR domain 8 134 6.2E-14 T 23-04-2016 IPR013568 SEFIR domain THIMO_RS06400 0d7d6a08f43e83367ffc37202e8bd552 1010 Gene3D G3DSA:1.25.40.10 684 792 2.1E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06400 0d7d6a08f43e83367ffc37202e8bd552 1010 Gene3D G3DSA:1.25.40.10 856 980 2.1E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06400 0d7d6a08f43e83367ffc37202e8bd552 1010 SUPERFAMILY SSF48452 685 816 1.1E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06400 0d7d6a08f43e83367ffc37202e8bd552 1010 SUPERFAMILY SSF52540 194 442 1.27E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17575 7f5a0af39fb9889075c61ca77e792329 306 Pfam PF15617 C-C_Bond_Lyase of the TIM-Barrel fold 20 305 1.9E-82 T 23-04-2016 THIMO_RS17575 7f5a0af39fb9889075c61ca77e792329 306 PANTHER PTHR32308 13 305 1.3E-44 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like THIMO_RS17575 7f5a0af39fb9889075c61ca77e792329 306 PANTHER PTHR32308:SF3 13 305 1.3E-44 T 23-04-2016 THIMO_RS17575 7f5a0af39fb9889075c61ca77e792329 306 SUPERFAMILY SSF51621 21 255 1.26E-28 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS17575 7f5a0af39fb9889075c61ca77e792329 306 Gene3D G3DSA:3.20.20.60 21 256 1.4E-28 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS17575 7f5a0af39fb9889075c61ca77e792329 306 PIRSF PIRSF015582 7 306 4.2E-45 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 SUPERFAMILY SSF53335 25 289 8.92E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 Pfam PF07669 Eco57I restriction-modification methylase 144 235 2.2E-8 T 23-04-2016 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 Gene3D G3DSA:3.40.50.150 32 251 1.5E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 30 46 2.7E-11 T 23-04-2016 THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 171 195 2.7E-11 T 23-04-2016 THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 55 69 2.7E-11 T 23-04-2016 THIMO_RS01995 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 140 152 2.7E-11 T 23-04-2016 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 361 45.053 T 23-04-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:3.30.1360.120 4 65 4.3E-23 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 PANTHER PTHR13847 5 328 8.1E-66 T 23-04-2016 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 262 355 4.3E-23 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:3.30.1360.120 130 231 8.2E-27 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 PANTHER PTHR13847:SF5 5 328 8.1E-66 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 3.2E-90 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:2.40.30.110 279 362 4.9E-25 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 SUPERFAMILY SSF103025 4 276 2.35E-92 T 23-04-2016 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:3.30.70.1400 66 129 1.2E-32 T 23-04-2016 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 SUPERFAMILY SSF101790 270 362 9.32E-23 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 360 2.0E-127 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS07995 719a123e6150895a8fedeff697b2a9d2 368 PIRSF PIRSF006487 1 365 4.7E-88 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF51621 425 713 2.46E-98 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF01590 GAF domain 17 154 4.1E-18 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 177 730 3.7E-130 T 23-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:3.20.20.60 429 742 6.4E-97 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF05524 PEP-utilising enzyme, N-terminal 178 300 9.2E-24 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 426 711 5.9E-96 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF55781 2 160 1.37E-32 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF47831 205 317 2.35E-26 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 PANTHER PTHR22931:SF23 199 722 2.2E-227 T 23-04-2016 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 466 485 1.4E-22 T 23-04-2016 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 636 651 1.4E-22 T 23-04-2016 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 619 634 1.4E-22 T 23-04-2016 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 672 684 1.4E-22 T 23-04-2016 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:3.30.450.40 2 167 6.0E-46 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF00391 PEP-utilising enzyme, mobile domain 327 398 9.3E-16 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:1.10.274.10 203 306 1.3E-28 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF52009 299 418 1.26E-25 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 SMART SM00065 17 164 1.6E-28 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 619 637 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 PANTHER PTHR22931 199 722 2.2E-227 T 23-04-2016 THIMO_RS07000 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:3.50.30.10 307 428 5.4E-29 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 1.1E-20 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 1.1E-20 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 1.1E-20 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 334 355 1.1E-20 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Gene3D G3DSA:3.40.50.620 113 468 1.9E-107 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Gene3D G3DSA:3.30.1360.70 3 110 6.2E-32 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 91 9.3E-25 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 6 586 1.2E-135 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 SMART SM01016 3 91 7.6E-39 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PANTHER PTHR11956 1 213 1.8E-224 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PANTHER PTHR11956 237 586 1.8E-224 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF05746 DALR anticodon binding domain 465 586 3.9E-34 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 SUPERFAMILY SSF52374 114 476 7.19E-88 T 23-04-2016 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Gene3D G3DSA:1.10.730.10 469 586 1.9E-41 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 SUPERFAMILY SSF47323 459 586 3.14E-34 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PANTHER PTHR11956:SF6 1 213 1.8E-224 T 23-04-2016 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 PANTHER PTHR11956:SF6 237 586 1.8E-224 T 23-04-2016 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 SUPERFAMILY SSF55190 5 111 4.71E-26 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF00750 tRNA synthetases class I (R) 299 428 2.8E-8 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF00750 tRNA synthetases class I (R) 100 178 1.6E-10 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 586 26.403 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 130 139 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS08305 370e886dad58c95a73b092dc2a7e2028 586 SMART SM00836 465 586 6.3E-56 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 THIMO_RS09825 1668247210f6e7827b71d25bceff46f6 454 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 359 451 4.2E-28 T 23-04-2016 IPR016772 Uncharacterised conserved protein UCP020408 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 Gene3D G3DSA:3.30.70.120 1 112 1.6E-51 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.3E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 SUPERFAMILY SSF54913 1 112 1.78E-45 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 PANTHER PTHR30115 1 112 3.2E-64 T 23-04-2016 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 SMART SM00938 4 105 4.8E-69 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 2 17 2.054365E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 23 41 2.054365E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 52 75 2.054365E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 83 103 2.054365E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10490 e2a6c65b10364ac8e5211e364a76b0cc 112 PIRSF PIRSF039144 1 112 8.0E-55 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 298 311 - T 23-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 6.9E-18 T 23-04-2016 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 6.9E-18 T 23-04-2016 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 6.9E-18 T 23-04-2016 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 160 175 6.9E-18 T 23-04-2016 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 PANTHER PTHR13789:SF5 1 394 5.0E-130 T 23-04-2016 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 SUPERFAMILY SSF51905 8 181 1.2E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 SUPERFAMILY SSF51905 271 389 1.2E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 PANTHER PTHR13789 1 394 5.0E-130 T 23-04-2016 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 Gene3D G3DSA:3.50.50.60 8 186 1.5E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 Gene3D G3DSA:3.50.50.60 272 360 1.5E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 Pfam PF01494 FAD binding domain 9 343 2.2E-25 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 THIMO_RS05720 2c12ac2b97c45207cf74379d597f1483 405 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 394 1.5E-135 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 SUPERFAMILY SSF51161 291 396 3.53E-16 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 PANTHER PTHR22572:SF10 6 375 2.6E-97 T 23-04-2016 THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 Gene3D G3DSA:3.90.550.10 8 279 2.6E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 Gene3D G3DSA:3.90.550.10 322 365 2.6E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 PANTHER PTHR22572 6 375 2.6E-97 T 23-04-2016 THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 Pfam PF00483 Nucleotidyl transferase 8 269 1.2E-26 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 SUPERFAMILY SSF53448 5 272 3.33E-42 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS08765 a9ba51a94be45e53869e15ca97e52b00 401 SUPERFAMILY SSF53448 339 355 3.33E-42 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 PANTHER PTHR32552 4 300 2.5E-20 T 23-04-2016 THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 Gene3D G3DSA:1.10.10.60 9 70 9.7E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 Gene3D G3DSA:3.30.420.10 135 295 1.6E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10760 486ceb2d749687c6587b032ebe28cc2e 357 Pfam PF00665 Integrase core domain 139 254 1.3E-16 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS04235 b9b9a31c930126caf9c9fcc3af6a8486 75 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 3 38 8.8E-6 T 23-04-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 Gene3D G3DSA:3.30.70.20 3 80 1.2E-17 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 Gene3D G3DSA:3.30.70.20 133 204 9.5E-17 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 106 117 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 PANTHER PTHR11938 50 236 6.9E-52 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 PANTHER PTHR11938 1 28 6.9E-52 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 Gene3D G3DSA:3.30.70.20 81 132 6.9E-25 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 Pfam PF12800 4Fe-4S binding domain 11 25 0.019 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 SUPERFAMILY SSF54862 1 203 1.15E-64 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 Pfam PF13247 4Fe-4S dicluster domain 66 167 1.6E-23 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 PANTHER PTHR11938:SF107 50 236 6.9E-52 T 23-04-2016 THIMO_RS07545 35270f06d9a79eefd64ff1a14fe0973b 240 PANTHER PTHR11938:SF107 1 28 6.9E-52 T 23-04-2016 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55874 568 732 3.14E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Pfam PF00989 PAS fold 372 486 5.9E-9 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 665 679 2.4E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 693 2.4E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 712 2.4E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 623 732 1.1E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SMART SM00388 511 581 0.0091 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.450.20 61 176 1.9E-16 T 23-04-2016 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.450.20 370 487 2.9E-23 T 23-04-2016 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF47384 510 576 3.73E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.450.40 192 369 1.5E-5 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55785 362 486 1.18E-21 T 23-04-2016 IPR000014 PAS domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SMART SM00387 623 734 2.1E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55785 58 176 2.44E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55781 218 359 2.4E-7 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SMART SM00091 372 438 7.3E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 SMART SM00091 71 137 1.1E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Pfam PF08448 PAS fold 80 179 1.5E-8 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 68 184 8.1E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 368 496 2.0E-19 T 23-04-2016 IPR000014 PAS domain THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 PANTHER PTHR24423 370 734 3.3E-72 T 23-04-2016 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 PANTHER PTHR24423 50 193 3.3E-72 T 23-04-2016 THIMO_RS11790 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.565.10 582 731 7.1E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS00825 a1fe80a75f850fb1e20bbb526f38a73f 297 Pfam PF14358 Domain of unknown function (DUF4405) 13 78 2.9E-15 T 23-04-2016 IPR025517 Domain of unknown function DUF4405 THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 Gene3D G3DSA:3.30.1330.60 106 260 6.8E-19 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 SUPERFAMILY SSF103088 123 260 1.57E-14 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 Pfam PF00691 OmpA family 129 254 3.3E-8 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 PANTHER PTHR30329:SF5 80 152 4.1E-21 T 23-04-2016 THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 PANTHER PTHR30329:SF5 172 281 4.1E-21 T 23-04-2016 THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 PANTHER PTHR30329 80 152 4.1E-21 T 23-04-2016 THIMO_RS08480 638fe4ce150e41e7d4ee8634006f8656 283 PANTHER PTHR30329 172 281 4.1E-21 T 23-04-2016 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 451 32.642 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PANTHER PTHR30050 1 452 6.6E-207 T 23-04-2016 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 361 429 7.1E-31 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 182 196 5.3E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 214 228 5.3E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 410 429 5.3E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 248 275 5.3E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 150 170 5.3E-51 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:1.10.1750.10 351 451 6.0E-38 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 SUPERFAMILY SSF48295 347 451 9.42E-35 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 SUPERFAMILY SSF52540 117 329 6.35E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Pfam PF11638 DnaA N-terminal domain 3 61 1.4E-14 T 23-04-2016 IPR024633 DnaA N-terminal domain THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 ProSitePatterns PS01008 DnaA protein signature. 410 429 - T 23-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 PANTHER PTHR30050:SF2 1 452 6.6E-207 T 23-04-2016 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 4 449 2.8E-174 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 SMART SM00760 360 429 3.8E-40 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:3.40.50.300 114 281 1.8E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 SMART SM00382 149 279 4.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Pfam PF00308 Bacterial dnaA protein 117 334 8.8E-94 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA THIMO_RS00015 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:1.10.8.60 283 350 1.1E-27 T 23-04-2016 THIMO_RS08775 4fcf6be4262a72d7747aaef966726b24 298 Pfam PF13743 Thioredoxin 11 203 5.9E-29 T 23-04-2016 THIMO_RS08775 4fcf6be4262a72d7747aaef966726b24 298 PANTHER PTHR13887 6 295 2.9E-13 T 23-04-2016 THIMO_RS08775 4fcf6be4262a72d7747aaef966726b24 298 SUPERFAMILY SSF52833 6 218 4.84E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08775 4fcf6be4262a72d7747aaef966726b24 298 Gene3D G3DSA:3.40.30.10 3 82 3.4E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08775 4fcf6be4262a72d7747aaef966726b24 298 PANTHER PTHR13887:SF21 6 295 2.9E-13 T 23-04-2016 THIMO_RS08775 4fcf6be4262a72d7747aaef966726b24 298 Gene3D G3DSA:1.10.472.60 83 183 1.2E-14 T 23-04-2016 IPR023169 UPF0413, central domain THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81301 32 293 1.63E-79 T 23-04-2016 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81593 294 443 7.38E-46 T 23-04-2016 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Pfam PF08335 GlnD PII-uridylyltransferase 831 918 3.7E-11 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Pfam PF08335 GlnD PII-uridylyltransferase 304 443 1.4E-45 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81593 820 948 9.42E-31 T 23-04-2016 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 34 950 19.309 T 23-04-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:3.30.460.10 644 816 2.5E-61 T 23-04-2016 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:3.30.460.10 121 292 5.1E-60 T 23-04-2016 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81301 530 819 2.94E-84 T 23-04-2016 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 41 281 1.0E-80 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 558 810 3.3E-85 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 THIMO_RS08130 a0137109fc14e805e1726825f94e149d 950 PANTHER PTHR30621 14 944 0.0 T 23-04-2016 THIMO_RS09435 c493c5623e14c637b043fdc0b30e02d6 212 Pfam PF00578 AhpC/TSA family 35 161 1.1E-9 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS09435 c493c5623e14c637b043fdc0b30e02d6 212 PANTHER PTHR10681:SF104 33 169 1.8E-13 T 23-04-2016 THIMO_RS09435 c493c5623e14c637b043fdc0b30e02d6 212 PANTHER PTHR10681 33 169 1.8E-13 T 23-04-2016 THIMO_RS09435 c493c5623e14c637b043fdc0b30e02d6 212 Gene3D G3DSA:3.40.30.10 35 166 9.5E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS09435 c493c5623e14c637b043fdc0b30e02d6 212 SUPERFAMILY SSF52833 32 209 1.17E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 550 567 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 2.8E-91 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.2090.10 719 802 3.8E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:1.10.3850.10 811 1026 1.1E-60 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 276 332 3.14E-24 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.70.1430 39 139 1.7E-32 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PANTHER PTHR32063 1 1031 0.0 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82866 804 1028 4.05E-47 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.2090.10 183 275 7.7E-28 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 563 669 2.43E-26 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:1.20.1640.10 293 507 1.0E-60 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PANTHER PTHR32063:SF27 1 1031 0.0 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82714 184 272 1.57E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82866 298 499 2.35E-51 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1029 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.70.1430 565 669 6.8E-29 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 138 183 3.14E-24 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 39 133 2.44E-27 T 23-04-2016 THIMO_RS09475 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82714 720 803 3.66E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 185 5.2E-49 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 Gene3D G3DSA:3.40.50.1240 5 189 2.8E-50 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 PANTHER PTHR23029:SF1 6 182 4.5E-42 T 23-04-2016 THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 SMART SM00855 6 161 6.8E-24 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 PANTHER PTHR23029 6 182 4.5E-42 T 23-04-2016 THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 23-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 THIMO_RS15015 c59eb1111abb355f31f9c1d0edac649c 208 SUPERFAMILY SSF53254 5 192 2.36E-51 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 Gene3D G3DSA:3.40.50.720 5 276 8.0E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 Pfam PF00106 short chain dehydrogenase 6 190 1.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.6E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.6E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.6E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.6E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 SUPERFAMILY SSF51735 2 192 9.14E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 SUPERFAMILY SSF51735 222 276 9.14E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 3.9E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 3.9E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 3.9E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PANTHER PTHR24322 149 181 2.8E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PANTHER PTHR24322 10 133 2.8E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PANTHER PTHR24322:SF463 149 181 2.8E-56 T 23-04-2016 THIMO_RS00765 feb6e9be4093d8697f29f0885e9cec83 283 PANTHER PTHR24322:SF463 10 133 2.8E-56 T 23-04-2016 THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 SMART SM00490 231 333 1.4E-17 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 SUPERFAMILY SSF52540 22 343 1.54E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 Gene3D G3DSA:3.40.50.300 9 166 6.1E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 SMART SM00847 393 490 2.9E-11 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 Gene3D G3DSA:3.40.50.300 212 344 4.8E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 PIRSF PIRSF005496 5 841 3.2E-290 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 PANTHER PTHR18934 9 456 2.2E-139 T 23-04-2016 THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 PANTHER PTHR18934 741 749 2.2E-139 T 23-04-2016 THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 Pfam PF04408 Helicase associated domain (HA2) 394 467 9.6E-15 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 9 834 5.4E-280 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 Pfam PF08482 ATP-dependent helicase C-terminal 695 827 7.5E-52 T 23-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 Pfam PF00271 Helicase conserved C-terminal domain 214 333 1.4E-12 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS07660 fe2a11169aa2f21e5dea25fd88a397d2 841 SMART SM00487 6 191 1.9E-12 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PANTHER PTHR19370 26 257 1.4E-44 T 23-04-2016 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 Gene3D G3DSA:2.10.240.10 235 267 2.4E-11 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 Pfam PF00175 Oxidoreductase NAD-binding domain 116 216 4.2E-21 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 Gene3D G3DSA:3.40.50.80 96 231 7.3E-34 T 23-04-2016 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 2.3E-7 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 2.3E-7 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 164 2.3E-7 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 235 266 1.7E-7 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 SUPERFAMILY SSF52343 110 250 2.1E-35 T 23-04-2016 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 Gene3D G3DSA:2.40.30.10 16 95 8.1E-11 T 23-04-2016 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 SUPERFAMILY SSF63380 8 105 1.24E-14 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PIRSF PIRSF006816 8 272 1.4E-65 T 23-04-2016 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 UniPathway: UPA00070 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00406 Cytochrome B5 reductase signature 203 211 3.9E-6 T 23-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 3.9E-6 T 23-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 THIMO_RS01240 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00406 Cytochrome B5 reductase signature 115 134 3.9E-6 T 23-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 Pfam PF01578 Cytochrome C assembly protein 29 182 7.2E-22 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 208 232 2.1E-29 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 160 186 2.1E-29 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 104 124 2.1E-29 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 66 86 2.1E-29 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 125 145 2.1E-29 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 49 66 2.1E-29 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06495 238c28db9b0ae89b59aefbdecb8b7b53 252 PANTHER PTHR30071 8 228 8.9E-42 T 23-04-2016 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 239 434 3.7E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 196 435 3.0E-60 T 23-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Gene3D G3DSA:1.10.3720.10 41 64 3.0E-44 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Gene3D G3DSA:1.10.3720.10 181 437 3.0E-44 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Pfam PF11812 Domain of unknown function (DUF3333) 23 172 2.8E-58 T 23-04-2016 IPR024573 Domain of unknown function DUF3333 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 SUPERFAMILY SSF161098 214 425 1.44E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 PANTHER PTHR30425:SF2 186 437 1.2E-85 T 23-04-2016 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 PANTHER PTHR30425:SF2 20 65 1.2E-85 T 23-04-2016 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 PANTHER PTHR30425 186 437 1.2E-85 T 23-04-2016 THIMO_RS12090 6b26eb3571a8cc5e65e5ce4dc4472a36 438 PANTHER PTHR30425 20 65 1.2E-85 T 23-04-2016 THIMO_RS18115 fea5fa007d75c1be53459f9b22dec890 214 SMART SM00900 91 183 3.8E-33 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS18115 fea5fa007d75c1be53459f9b22dec890 214 PANTHER PTHR36118 1 202 5.0E-41 T 23-04-2016 THIMO_RS18115 fea5fa007d75c1be53459f9b22dec890 214 Pfam PF04205 FMN-binding domain 91 181 1.1E-19 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS18115 fea5fa007d75c1be53459f9b22dec890 214 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 2 184 2.2E-38 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS18115 fea5fa007d75c1be53459f9b22dec890 214 PIRSF PIRSF006091 1 195 7.2E-47 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS18115 fea5fa007d75c1be53459f9b22dec890 214 PANTHER PTHR36118:SF1 1 202 5.0E-41 T 23-04-2016 THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 Pfam PF00482 Type II secretion system (T2SS), protein F 78 201 7.6E-32 T 23-04-2016 IPR018076 Type II secretion system F domain THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 Pfam PF00482 Type II secretion system (T2SS), protein F 282 404 2.8E-33 T 23-04-2016 IPR018076 Type II secretion system F domain THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 PANTHER PTHR30012 15 412 6.0E-162 T 23-04-2016 THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 PANTHER PTHR30012:SF0 15 412 6.0E-162 T 23-04-2016 THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 377 391 4.1E-19 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 173 201 4.1E-19 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 393 412 4.1E-19 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS04985 a3725392e1ddf7fa6101ec47f5e31536 412 PRINTS PR00812 Bacterial general secretion pathway protein F signature 74 86 4.1E-19 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS15980 86fbf0642fc70a4d690dda6b13113c54 145 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 14 92 1.2E-7 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS15980 86fbf0642fc70a4d690dda6b13113c54 145 SUPERFAMILY SSF143243 7 94 5.1E-13 T 23-04-2016 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 PANTHER PTHR30627:SF2 8 612 8.1E-224 T 23-04-2016 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Pfam PF00905 Penicillin binding protein transpeptidase domain 270 608 3.2E-70 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 SUPERFAMILY SSF56519 59 251 1.7E-50 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 237 8.3E-45 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 PANTHER PTHR30627 8 612 8.1E-224 T 23-04-2016 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 SUPERFAMILY SSF56601 253 615 2.01E-98 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Gene3D G3DSA:3.40.710.10 253 613 2.0E-104 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Gene3D G3DSA:3.90.1310.10 134 251 7.1E-37 T 23-04-2016 THIMO_RS13245 8c9bfdfb4579f28aa322a90e1ab2ce37 627 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 22 613 6.7E-231 T 23-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 23-04-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PANTHER PTHR11735 1 340 3.4E-164 T 23-04-2016 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 SUPERFAMILY SSF53067 1 314 2.91E-44 T 23-04-2016 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 8.4E-119 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 Pfam PF00814 Glycoprotease family 24 311 3.9E-99 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.4E-50 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.4E-50 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.4E-50 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.4E-50 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.4E-50 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.4E-50 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 PANTHER PTHR11735:SF6 1 340 3.4E-164 T 23-04-2016 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 62.239 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 Gene3D G3DSA:3.30.420.40 1 159 2.0E-49 T 23-04-2016 THIMO_RS02655 4386cce7dc5498f56fb26e2c67c877d6 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 4.9E-132 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 SMART SM00729 140 365 8.2E-49 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 SUPERFAMILY SSF102114 128 370 3.92E-48 T 23-04-2016 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 Gene3D G3DSA:3.80.30.20 139 375 5.3E-68 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 10 437 3.1E-160 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 Gene3D G3DSA:2.40.50.140 380 441 3.8E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 PANTHER PTHR11918 9 441 4.7E-208 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 Pfam PF00919 Uncharacterized protein family UPF0004 11 88 8.8E-18 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 PANTHER PTHR11918:SF57 9 441 4.7E-208 T 23-04-2016 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 Pfam PF04055 Radical SAM superfamily 146 323 8.9E-27 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 11 438 7.2E-97 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 THIMO_RS11770 dcfa5b41ab6ec1ff4f2edd45a2f77b4a 443 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 9 440 59.216 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 PANTHER PTHR30258:SF2 1 541 4.6E-155 T 23-04-2016 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 Pfam PF00437 Type II/IV secretion system protein 170 431 1.4E-71 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 SUPERFAMILY SSF52540 159 535 5.65E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 44 140 6.6E-13 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 SUPERFAMILY SSF160246 7 139 3.14E-17 T 23-04-2016 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 Gene3D G3DSA:3.30.450.90 159 265 1.4E-33 T 23-04-2016 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 PANTHER PTHR30258 1 541 4.6E-155 T 23-04-2016 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 Gene3D G3DSA:3.40.50.300 272 537 2.3E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 359 373 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03115 3bdfd0daa8b66cc7b838043498f3a3a7 541 SMART SM00382 294 413 1.1E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS17565 ff34fe04ed146d5c11fbaf89fbf939c7 249 PIRSF PIRSF030802 3 244 4.7E-41 T 23-04-2016 IPR024197 Uncharacterised conserved protein UCP030802 THIMO_RS17565 ff34fe04ed146d5c11fbaf89fbf939c7 249 Gene3D G3DSA:3.40.50.1000 8 103 2.9E-10 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17565 ff34fe04ed146d5c11fbaf89fbf939c7 249 Gene3D G3DSA:3.40.50.1000 174 235 2.9E-10 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17565 ff34fe04ed146d5c11fbaf89fbf939c7 249 SUPERFAMILY SSF56784 9 230 1.21E-16 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 PIRSF PIRSF004925 1 378 1.5E-103 T 23-04-2016 IPR026032 Probable 3-phenylpropionic acid transporter THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 SUPERFAMILY SSF103473 3 377 2.62E-45 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 Pfam PF12832 MFS_1 like family 3 356 2.6E-90 T 23-04-2016 IPR024989 Major facilitator superfamily associated domain THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 Gene3D G3DSA:1.20.1250.20 3 178 7.0E-15 T 23-04-2016 THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 PANTHER PTHR23522:SF3 2 378 1.5E-89 T 23-04-2016 THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 PANTHER PTHR23522 2 378 1.5E-89 T 23-04-2016 THIMO_RS05255 e37f07029167e46b26d23f3477af8d8f 379 Gene3D G3DSA:1.20.1250.20 190 374 1.6E-27 T 23-04-2016 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PANTHER PTHR22939:SF101 74 299 1.3E-79 T 23-04-2016 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 Pfam PF13365 Trypsin-like peptidase domain 133 268 2.2E-30 T 23-04-2016 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 9.5E-44 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 261 278 9.5E-44 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 143 155 9.5E-44 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 164 184 9.5E-44 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 204 228 9.5E-44 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 Gene3D G3DSA:2.40.10.10 74 188 4.4E-30 T 23-04-2016 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 Gene3D G3DSA:2.40.10.10 196 299 2.0E-40 T 23-04-2016 THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 SUPERFAMILY SSF50494 73 295 8.82E-59 T 23-04-2016 IPR009003 Peptidase S1, PA clan THIMO_RS05120 ef02c66df17eb52164d36683cf477670 302 PANTHER PTHR22939 74 299 1.3E-79 T 23-04-2016 THIMO_RS18565 66988c30f2b3bc19aef71864a48306ae 69 ProSitePatterns PS00018 EF-hand calcium-binding domain. 41 53 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site THIMO_RS18565 66988c30f2b3bc19aef71864a48306ae 69 Gene3D G3DSA:1.10.238.10 11 59 4.1E-6 T 23-04-2016 IPR011992 EF-hand domain pair THIMO_RS18565 66988c30f2b3bc19aef71864a48306ae 69 Pfam PF13202 EF hand 38 56 7.5E-5 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS18565 66988c30f2b3bc19aef71864a48306ae 69 SUPERFAMILY SSF47473 9 57 4.7E-6 T 23-04-2016 IPR011992 EF-hand domain pair THIMO_RS12585 62eb2bfb5dc5886852e6c7cf36718cc2 357 PANTHER PTHR21716 7 345 2.7E-126 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS12585 62eb2bfb5dc5886852e6c7cf36718cc2 357 Pfam PF01594 Domain of unknown function DUF20 19 344 1.1E-70 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS12585 62eb2bfb5dc5886852e6c7cf36718cc2 357 PANTHER PTHR21716:SF19 7 345 2.7E-126 T 23-04-2016 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PANTHER PTHR24422:SF6 116 858 2.5E-184 T 23-04-2016 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF01339 CheB methylesterase 29 200 4.7E-53 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:1.10.155.10 229 290 2.1E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF03705 CheR methyltransferase, all-alpha domain 230 279 2.7E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.40.50.150 293 486 6.3E-63 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF13596 PAS domain 743 848 1.3E-19 T 23-04-2016 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF01739 CheR methyltransferase, SAM binding domain 294 485 7.4E-54 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SMART SM00138 227 488 6.9E-92 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF47757 228 295 4.97E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.30.450.20 853 974 3.6E-8 T 23-04-2016 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.30.450.20 736 848 7.7E-8 T 23-04-2016 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF52738 27 209 8.63E-55 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF55785 853 970 2.28E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF55785 732 848 1.81E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PANTHER PTHR24422 116 858 2.5E-184 T 23-04-2016 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF53335 293 486 5.01E-49 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SMART SM00091 854 922 9.3 T 23-04-2016 IPR000014 PAS domain THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 SMART SM00091 741 806 0.55 T 23-04-2016 IPR000014 PAS domain THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.40.50.180 26 208 3.2E-59 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 326 346 1.2E-24 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 362 378 1.2E-24 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 428 442 1.2E-24 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 447 470 1.2E-24 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS13415 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 249 262 1.2E-24 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 Pfam PF08402 TOBE domain 277 318 1.7E-5 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:2.40.50.140 281 362 2.9E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 SUPERFAMILY SSF52540 4 243 1.11E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 PANTHER PTHR24220:SF151 5 285 6.8E-150 T 23-04-2016 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:3.40.50.300 4 235 3.5E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:2.40.50.100 364 378 2.1E-7 T 23-04-2016 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:2.40.50.100 240 280 2.1E-7 T 23-04-2016 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 SMART SM00382 29 220 4.0E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 PANTHER PTHR24220 5 285 6.8E-150 T 23-04-2016 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 Pfam PF00005 ABC transporter 21 162 3.4E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS16315 93b81671ba1bfed46ddf22ac748b2969 381 SUPERFAMILY SSF50331 237 378 2.24E-23 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal THIMO_RS14195 9649624a951194d67036fdb32768d527 662 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 1.2E-13 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 575 640 3.6E-19 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 SUPERFAMILY SSF52540 345 595 1.67E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14195 9649624a951194d67036fdb32768d527 662 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 573 659 9.0E-25 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 319 2.7E-20 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 ProSitePatterns PS00211 ABC transporters family signature. 496 510 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 Gene3D G3DSA:3.40.50.300 4 258 2.3E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14195 9649624a951194d67036fdb32768d527 662 Gene3D G3DSA:3.40.50.300 344 597 9.6E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14195 9649624a951194d67036fdb32768d527 662 PANTHER PTHR24220:SF586 372 481 1.4E-152 T 23-04-2016 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 PANTHER PTHR24220:SF586 7 289 1.4E-152 T 23-04-2016 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 Pfam PF00005 ABC transporter 373 524 1.5E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 Pfam PF00005 ABC transporter 26 184 6.5E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 SUPERFAMILY SSF52540 5 255 1.55E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14195 9649624a951194d67036fdb32768d527 662 PANTHER PTHR24220 372 481 1.4E-152 T 23-04-2016 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 PANTHER PTHR24220 7 289 1.4E-152 T 23-04-2016 THIMO_RS14195 9649624a951194d67036fdb32768d527 662 SMART SM00382 34 234 1.0E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14195 9649624a951194d67036fdb32768d527 662 SMART SM00382 381 573 1.2E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14035 9d5dbfb641da703a2138b15e11c10942 84 Gene3D G3DSA:2.40.50.220 1 82 1.2E-23 T 23-04-2016 IPR023414 Ethanolamine utilization protein-like domain THIMO_RS14035 9d5dbfb641da703a2138b15e11c10942 84 SUPERFAMILY SSF159133 1 81 6.02E-23 T 23-04-2016 IPR023414 Ethanolamine utilization protein-like domain THIMO_RS14035 9d5dbfb641da703a2138b15e11c10942 84 TIGRFAM TIGR02703 carboxysome_A: carboxysome peptide A 1 78 2.0E-43 T 23-04-2016 IPR014076 Carboxysome peptide A THIMO_RS14035 9d5dbfb641da703a2138b15e11c10942 84 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 10 78 1.0E-28 T 23-04-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml THIMO_RS14035 9d5dbfb641da703a2138b15e11c10942 84 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 76 5.6E-20 T 23-04-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml THIMO_RS00905 d190416693806889f564ea438a51e41d 518 Gene3D G3DSA:3.40.140.20 368 508 1.2E-55 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 Pfam PF01808 AICARFT/IMPCHase bienzyme 134 449 2.1E-116 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 SUPERFAMILY SSF53927 210 518 4.11E-126 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 Pfam PF02142 MGS-like domain 16 129 3.1E-26 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS00905 d190416693806889f564ea438a51e41d 518 PANTHER PTHR11692 2 518 0.0 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 SMART SM00851 16 129 1.3E-55 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS00905 d190416693806889f564ea438a51e41d 518 Gene3D G3DSA:3.40.140.20 242 362 6.6E-48 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 Gene3D G3DSA:3.40.50.1380 2 187 5.4E-80 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS00905 d190416693806889f564ea438a51e41d 518 PANTHER PTHR11692:SF2 2 518 0.0 T 23-04-2016 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 4 518 44.86 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 PIRSF PIRSF000414 1 518 6.8E-217 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 518 9.2E-232 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 SMART SM00798 134 450 2.9E-198 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 THIMO_RS00905 d190416693806889f564ea438a51e41d 518 SUPERFAMILY SSF52335 4 194 5.23E-66 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 PANTHER PTHR12592:SF0 4 503 2.0E-133 T 23-04-2016 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 PANTHER PTHR12592 4 503 2.0E-133 T 23-04-2016 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 235 494 8.6E-68 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 17 217 24.35 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 232 502 23.072 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 SUPERFAMILY SSF53613 230 497 1.05E-69 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 Gene3D G3DSA:3.40.50.10260 14 240 2.2E-66 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 322 332 - T 23-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 Gene3D G3DSA:3.40.1190.20 241 498 4.1E-84 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 SUPERFAMILY SSF64153 15 254 3.53E-60 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 Pfam PF01256 Carbohydrate kinase 255 492 3.0E-58 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 24 217 1.1E-41 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 Pfam PF03853 YjeF-related protein N-terminus 38 196 1.8E-43 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 THIMO_RS08080 d2acde23c3457bd84afed1985e0dfd40 503 PIRSF PIRSF017184 13 502 2.0E-130 T 23-04-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 PANTHER PTHR24221 16 601 1.1E-233 T 23-04-2016 THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 SUPERFAMILY SSF52540 344 591 1.48E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 Pfam PF00664 ABC transporter transmembrane region 38 302 1.4E-51 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 17 591 4.2E-241 T 23-04-2016 IPR011918 ABC transporter, ATP-binding/permease protein THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 Gene3D G3DSA:3.40.50.300 352 585 1.1E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 SMART SM00382 380 566 1.2E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 SUPERFAMILY SSF90123 24 342 1.83E-73 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 Gene3D G3DSA:1.20.1560.10 24 339 2.8E-76 T 23-04-2016 THIMO_RS13435 10c07c3ebc57d35c655f50236ceee01f 606 Pfam PF00005 ABC transporter 373 520 8.2E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS16655 b0900637ad6672e5f08ad442238cde82 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 92 136 5.0E-13 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain THIMO_RS16655 b0900637ad6672e5f08ad442238cde82 139 PANTHER PTHR30435 1 139 2.7E-58 T 23-04-2016 THIMO_RS16655 b0900637ad6672e5f08ad442238cde82 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 139 2.8E-47 T 23-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 THIMO_RS16655 b0900637ad6672e5f08ad442238cde82 139 Pfam PF00460 Flagella basal body rod protein 7 34 8.4E-9 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 THIMO_RS16655 b0900637ad6672e5f08ad442238cde82 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site THIMO_RS16655 b0900637ad6672e5f08ad442238cde82 139 PANTHER PTHR30435:SF2 1 139 2.7E-58 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF13328 HD domain 43 192 1.9E-49 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 43 713 7.9E-221 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 PANTHER PTHR21262 28 719 0.0 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF13291 ACT domain 641 716 1.3E-15 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF04607 Region found in RelA / SpoT proteins 252 361 1.6E-33 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:3.30.70.260 642 713 4.1E-13 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF81301 197 408 4.09E-56 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF81271 391 463 5.89E-21 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 PANTHER PTHR21262:SF0 28 719 0.0 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 SMART SM00471 58 170 8.2E-11 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:3.30.460.10 210 341 4.2E-42 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF02824 TGS domain 404 463 1.6E-18 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF55021 646 716 3.82E-9 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF109604 23 207 2.56E-68 T 23-04-2016 THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:3.10.20.30 403 464 1.4E-18 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS03635 d0bda10ae1bbb75172990791c6c61e7e 725 SMART SM00954 252 362 1.7E-53 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 THIMO_RS03320 c71afc5db3147aef49c888f532dccb96 211 PIRSF PIRSF020634 1 210 1.0E-64 T 23-04-2016 IPR011392 Tellurite resistance, TerY THIMO_RS03320 c71afc5db3147aef49c888f532dccb96 211 SMART SM00327 3 182 4.1E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS03320 c71afc5db3147aef49c888f532dccb96 211 Pfam PF00092 von Willebrand factor type A domain 6 160 1.2E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS03320 c71afc5db3147aef49c888f532dccb96 211 Gene3D G3DSA:3.40.50.410 6 166 8.4E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS03320 c71afc5db3147aef49c888f532dccb96 211 SUPERFAMILY SSF53300 4 161 7.79E-19 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Gene3D G3DSA:3.30.450.20 86 211 5.9E-5 T 23-04-2016 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SMART SM00052 691 937 4.3E-90 T 23-04-2016 IPR001633 EAL domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SUPERFAMILY SSF55781 233 381 1.02E-17 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SMART SM00086 462 504 5.3E-6 T 23-04-2016 IPR001610 PAC motif THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SMART SM00086 159 202 130.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SUPERFAMILY SSF55785 400 513 4.03E-24 T 23-04-2016 IPR000014 PAS domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 513 679 8.9E-38 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SMART SM00091 389 455 1.2E-9 T 23-04-2016 IPR000014 PAS domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Pfam PF00990 Diguanylate cyclase, GGDEF domain 515 676 7.2E-44 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 388 511 2.9E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SMART SM00267 504 681 3.3E-55 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Gene3D G3DSA:3.30.70.270 517 688 1.8E-52 T 23-04-2016 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 PANTHER PTHR33121 643 954 1.6E-72 T 23-04-2016 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Pfam PF08448 PAS fold 96 202 1.3E-7 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Gene3D G3DSA:3.30.450.20 383 502 1.1E-24 T 23-04-2016 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Gene3D G3DSA:3.30.450.40 230 371 7.9E-16 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SMART SM00065 233 385 8.3E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 PANTHER PTHR33121:SF13 643 954 1.6E-72 T 23-04-2016 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SUPERFAMILY SSF141868 697 944 1.2E-77 T 23-04-2016 IPR001633 EAL domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Gene3D G3DSA:3.20.20.450 696 943 1.6E-80 T 23-04-2016 IPR001633 EAL domain THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Pfam PF13185 GAF domain 232 371 8.4E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Pfam PF00989 PAS fold 390 501 2.0E-12 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 SUPERFAMILY SSF55073 520 683 2.28E-46 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS18125 d276a56d49dd620f71863cda598d74ec 957 Pfam PF00563 EAL domain 698 932 3.3E-63 T 23-04-2016 IPR001633 EAL domain THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 247 1.1E-48 T 23-04-2016 THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.5E-30 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.5E-30 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.5E-30 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.5E-30 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.5E-30 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.5E-30 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 1.2E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.2E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.2E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PANTHER PTHR24322:SF211 160 195 9.8E-57 T 23-04-2016 THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 SUPERFAMILY SSF51735 10 249 7.71E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PANTHER PTHR24322:SF211 15 144 9.8E-57 T 23-04-2016 THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PANTHER PTHR24322 160 195 9.8E-57 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 Gene3D G3DSA:3.40.50.720 6 249 2.0E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02680 e1b22aa518e5bf7ab503e4a9c288c85c 251 PANTHER PTHR24322 15 144 9.8E-57 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 91 115 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 32 48 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 126 148 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 235 262 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 49 70 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 163 192 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 263 289 2.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 167 191 - T 23-04-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PANTHER PTHR10755 10 304 2.7E-175 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 SUPERFAMILY SSF102886 7 303 3.27E-131 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 Pfam PF01218 Coproporphyrinogen III oxidase 10 303 1.1E-125 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 4 278 55.33 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 Gene3D G3DSA:3.40.1500.10 4 303 1.0E-128 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS04005 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PIRSF PIRSF000166 2 304 1.3E-120 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 PIRSF PIRSF000463 12 737 5.3E-296 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF51011 626 729 3.6E-32 T 23-04-2016 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:3.20.20.80 243 613 3.6E-95 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 102 729 45.473 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF81296 22 116 3.04E-13 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 126 208 7.9E-24 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 630 727 9.8E-20 T 23-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 SMART SM00642 252 612 2.9E-7 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF51445 181 618 3.6E-117 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 PANTHER PTHR10357:SF160 49 728 0.0 T 23-04-2016 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:2.60.40.1180 626 728 8.3E-35 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 110 726 4.6E-289 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Pfam PF00128 Alpha amylase, catalytic domain 278 348 5.6E-9 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:2.60.40.10 18 107 9.3E-11 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:2.60.40.10 114 221 1.6E-38 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF81296 139 196 9.8E-12 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS15810 73f5dd89d858e1aa3b39abb124761cb4 764 PANTHER PTHR10357 49 728 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 SUPERFAMILY SSF52540 75 345 5.43E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 Gene3D G3DSA:2.40.10.170 2 73 4.6E-28 T 23-04-2016 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 PANTHER PTHR15184 1 458 0.0 T 23-04-2016 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 Gene3D G3DSA:1.10.1140.10 343 458 7.9E-57 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 PANTHER PTHR15184:SF44 1 458 0.0 T 23-04-2016 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 SUPERFAMILY SSF47917 343 458 2.33E-53 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 340 2.4E-66 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 8.6E-21 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 458 3.7E-252 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 458 56.551 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 SMART SM00382 140 403 6.8E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 SUPERFAMILY SSF50615 2 73 6.54E-24 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 Gene3D G3DSA:3.40.50.300 74 342 1.6E-111 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05600 54e4277d4c2b85f7927ad3bdc8b45da9 458 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 331 340 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PANTHER PTHR34933:SF2 5 221 1.5E-70 T 23-04-2016 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PANTHER PTHR34933 5 221 1.5E-70 T 23-04-2016 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 Pfam PF02107 Flagellar L-ring protein 42 218 1.7E-58 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PRINTS PR01008 Flagellar L-ring protein signature 181 195 4.7E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PRINTS PR01008 Flagellar L-ring protein signature 134 149 4.7E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PRINTS PR01008 Flagellar L-ring protein signature 197 211 4.7E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PRINTS PR01008 Flagellar L-ring protein signature 160 176 4.7E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 PRINTS PR01008 Flagellar L-ring protein signature 63 75 4.7E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS16630 4c9dc626591e2a7eeae8cbc87d3d05bd 221 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 218 24.311 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 34.842 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 23-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 154 1.2E-61 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 PANTHER PTHR32125 1 154 2.6E-45 T 23-04-2016 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 Pfam PF02542 YgbB family 1 154 5.3E-64 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 Gene3D G3DSA:3.30.1330.50 1 155 4.3E-68 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06350 fc73dc397d15e0cb3ecd6a99a4574532 156 SUPERFAMILY SSF69765 2 154 4.06E-62 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 Pfam PF01343 Peptidase family S49 145 289 5.9E-34 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 PANTHER PTHR30341:SF1 6 327 2.7E-80 T 23-04-2016 THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 PANTHER PTHR30341 6 327 2.7E-80 T 23-04-2016 THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 Gene3D G3DSA:3.90.226.10 222 308 1.0E-47 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 Gene3D G3DSA:3.90.226.10 55 184 1.0E-47 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 SUPERFAMILY SSF52096 60 192 3.4E-40 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS02520 a6d3cee1a7dfa1196861adc288cdab00 333 SUPERFAMILY SSF52096 221 281 3.4E-40 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS06020 7795aa4a58f2ee7c60f7d73923babb5c 321 Gene3D G3DSA:3.60.21.10 101 274 1.3E-22 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS06020 7795aa4a58f2ee7c60f7d73923babb5c 321 PANTHER PTHR31302 17 321 4.6E-49 T 23-04-2016 THIMO_RS06020 7795aa4a58f2ee7c60f7d73923babb5c 321 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 101 259 2.4E-10 T 23-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type THIMO_RS06020 7795aa4a58f2ee7c60f7d73923babb5c 321 SUPERFAMILY SSF56300 101 318 4.59E-35 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS04535 9df58c5e61cb309b3faeca8d6fda3ec8 190 PANTHER PTHR11615 51 190 4.3E-19 T 23-04-2016 THIMO_RS04535 9df58c5e61cb309b3faeca8d6fda3ec8 190 Gene3D G3DSA:2.40.40.20 57 190 1.9E-20 T 23-04-2016 THIMO_RS04535 9df58c5e61cb309b3faeca8d6fda3ec8 190 SUPERFAMILY SSF50692 59 190 1.89E-15 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain THIMO_RS04535 9df58c5e61cb309b3faeca8d6fda3ec8 190 PANTHER PTHR11615:SF139 51 190 4.3E-19 T 23-04-2016 THIMO_RS04535 9df58c5e61cb309b3faeca8d6fda3ec8 190 Pfam PF01568 Molydopterin dinucleotide binding domain 60 181 1.1E-12 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 16 398 1.7E-191 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 Gene3D G3DSA:3.40.50.1100 107 186 3.3E-22 T 23-04-2016 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 90 104 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 SUPERFAMILY SSF53686 12 397 2.23E-152 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 PANTHER PTHR10314:SF3 16 397 6.9E-233 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 Gene3D G3DSA:3.40.50.1100 187 398 2.1E-99 T 23-04-2016 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 PIRSF PIRSF001413 3 404 8.1E-166 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 PANTHER PTHR10314 16 397 6.9E-233 T 23-04-2016 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 11 400 53.218 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12665 64ac686a83c8ad43a2196c9145507c9b 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 62 387 1.5E-48 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 Pfam PF13710 ACT domain 13 72 1.1E-16 T 23-04-2016 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 3.7E-26 T 23-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 SUPERFAMILY SSF55021 79 161 3.72E-26 T 23-04-2016 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 4.3E-65 T 23-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 Gene3D G3DSA:3.30.70.1150 83 161 6.1E-29 T 23-04-2016 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 5.0E-34 T 23-04-2016 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 SUPERFAMILY SSF55021 1 75 8.09E-23 T 23-04-2016 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 PANTHER PTHR30239 1 162 4.4E-88 T 23-04-2016 THIMO_RS01835 40f9f6c2947d1745e4e67b1b204e7f39 163 Gene3D G3DSA:3.30.70.260 1 78 8.1E-36 T 23-04-2016 THIMO_RS08035 dd3615f90c5e4632c90b4f6947f75120 85 SUPERFAMILY SSF54285 1 85 2.24E-19 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp THIMO_RS08035 dd3615f90c5e4632c90b4f6947f75120 85 PANTHER PTHR33359 1 85 6.7E-20 T 23-04-2016 THIMO_RS08035 dd3615f90c5e4632c90b4f6947f75120 85 Gene3D G3DSA:3.10.20.30 1 85 5.2E-22 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS08035 dd3615f90c5e4632c90b4f6947f75120 85 Pfam PF02597 ThiS family 4 85 2.0E-15 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 THIMO_RS02720 47b8b8f496c97cff630e5a3be3c9adbc 229 Pfam PF01618 MotA/TolQ/ExbB proton channel family 81 208 3.0E-42 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 THIMO_RS02720 47b8b8f496c97cff630e5a3be3c9adbc 229 PANTHER PTHR30625:SF3 1 228 3.9E-67 T 23-04-2016 THIMO_RS02720 47b8b8f496c97cff630e5a3be3c9adbc 229 PANTHER PTHR30625 1 228 3.9E-67 T 23-04-2016 THIMO_RS02720 47b8b8f496c97cff630e5a3be3c9adbc 229 TIGRFAM TIGR02796 tolQ: protein TolQ 7 220 1.5E-88 T 23-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 THIMO_RS03220 a654247c7dec4d096f02f2449c933c24 235 Gene3D G3DSA:3.40.50.880 1 229 7.0E-56 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS03220 a654247c7dec4d096f02f2449c933c24 235 PANTHER PTHR11922:SF11 36 180 4.2E-53 T 23-04-2016 THIMO_RS03220 a654247c7dec4d096f02f2449c933c24 235 Pfam PF00117 Glutamine amidotransferase class-I 43 190 2.8E-14 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 THIMO_RS03220 a654247c7dec4d096f02f2449c933c24 235 PANTHER PTHR11922 36 180 4.2E-53 T 23-04-2016 THIMO_RS03220 a654247c7dec4d096f02f2449c933c24 235 SUPERFAMILY SSF52317 5 202 5.3E-45 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 Pfam PF13533 Biotin-lipoyl like 57 103 1.9E-14 T 23-04-2016 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 PANTHER PTHR30367:SF5 16 302 2.4E-90 T 23-04-2016 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 SUPERFAMILY SSF111369 54 197 7.19E-22 T 23-04-2016 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 Pfam PF13437 HlyD family secretion protein 165 251 3.3E-14 T 23-04-2016 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 55 249 5.3E-34 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 Gene3D G3DSA:2.40.50.100 56 89 1.6E-16 T 23-04-2016 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 Gene3D G3DSA:2.40.50.100 162 195 1.6E-16 T 23-04-2016 THIMO_RS02305 1ee793717525253fd8e31aee3899077c 305 PANTHER PTHR30367 16 302 2.4E-90 T 23-04-2016 THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 Gene3D G3DSA:3.40.50.300 100 341 6.9E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 PANTHER PTHR30486 2 344 1.1E-194 T 23-04-2016 THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 Pfam PF00437 Type II/IV secretion system protein 12 265 5.6E-45 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 7.6E-151 T 23-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 PANTHER PTHR30486:SF6 2 344 1.1E-194 T 23-04-2016 THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 SUPERFAMILY SSF52540 5 335 8.33E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03300 7fdbd698660ce81ff30f59c8120b31c1 345 SMART SM00382 122 256 4.0E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS15950 a03a514f6103c9b1d82765159f87cc11 411 Pfam PF01609 Transposase DDE domain 101 320 3.8E-10 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15950 a03a514f6103c9b1d82765159f87cc11 411 SUPERFAMILY SSF53098 92 334 5.01E-15 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 SUPERFAMILY SSF53335 160 458 6.84E-71 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 22 459 3.4E-121 T 23-04-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:1.10.287.730 163 185 2.5E-6 T 23-04-2016 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:3.30.70.1170 188 245 8.9E-22 T 23-04-2016 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PANTHER PTHR22807 51 458 3.2E-111 T 23-04-2016 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 Pfam PF01189 16S rRNA methyltransferase RsmB/F 256 456 7.2E-58 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 Pfam PF01029 NusB family 21 141 3.2E-19 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 441 458 1.2E-28 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 237 251 1.2E-28 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 393 409 1.2E-28 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 266 276 1.2E-28 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 343 355 1.2E-28 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:3.40.50.150 249 458 4.4E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:1.10.940.10 19 162 4.2E-36 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 SUPERFAMILY SSF48013 20 163 1.06E-26 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 THIMO_RS05950 240fe90bbfe85670e69768cf8af76576 461 PANTHER PTHR22807:SF30 51 458 3.2E-111 T 23-04-2016 THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 SMART SM00382 29 221 2.5E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 SUPERFAMILY SSF52540 2 222 3.06E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 Pfam PF00005 ABC transporter 20 174 2.6E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 PANTHER PTHR24220 6 219 2.0E-62 T 23-04-2016 THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 Gene3D G3DSA:3.40.50.300 3 220 7.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12010 324e6a86346e583136fe0938159378ab 249 PANTHER PTHR24220:SF218 6 219 2.0E-62 T 23-04-2016 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Hamap MF_00258 Glutamate racemase [murI]. 10 262 35.412 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Pfam PF01177 Asp/Glu/Hydantoin racemase 12 220 1.5E-33 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 SUPERFAMILY SSF53681 11 112 9.48E-32 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Gene3D G3DSA:3.40.50.1860 9 178 3.3E-52 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 185 195 - T 23-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 PANTHER PTHR21198:SF2 3 270 4.9E-97 T 23-04-2016 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 TIGRFAM TIGR00067 glut_race: glutamate racemase 12 255 3.4E-63 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 SUPERFAMILY SSF53681 114 263 7.59E-35 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS07750 44d8e201f3a5905ae8fec5cc5d85e1c8 279 PANTHER PTHR21198 3 270 4.9E-97 T 23-04-2016 THIMO_RS12070 1fb9eacd783a13b1d0f4b2a493f5d4c8 228 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 33 188 1.0E-6 T 23-04-2016 THIMO_RS12070 1fb9eacd783a13b1d0f4b2a493f5d4c8 228 Pfam PF14145 YrhK-like protein 26 81 3.5E-12 T 23-04-2016 IPR025424 YrhK domain THIMO_RS12070 1fb9eacd783a13b1d0f4b2a493f5d4c8 228 Pfam PF14145 YrhK-like protein 96 151 1.1E-11 T 23-04-2016 IPR025424 YrhK domain THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF14520 Helix-hairpin-helix domain 448 504 1.3E-6 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 117 146 - T 23-04-2016 IPR018239 NAD-dependent DNA ligase, active site THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF12826 Helix-hairpin-helix motif 512 565 3.1E-14 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF52113 670 746 3.18E-17 T 23-04-2016 IPR001357 BRCT domain THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF50249 320 402 1.71E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF56091 5 318 2.34E-118 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF47781 406 571 1.93E-54 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.150.20 506 572 8.2E-19 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.150.20 580 662 2.5E-16 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Hamap MF_01588 DNA ligase [ligA]. 5 745 52.9 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00532 6 450 9.8E-264 T 23-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:3.30.470.30 121 254 4.4E-48 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 514 533 210.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 549 568 33.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 482 501 0.23 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 448 467 44.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 14 571 3.6E-222 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00292 672 748 2.7E-13 T 23-04-2016 IPR001357 BRCT domain THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF47781 556 661 8.26E-15 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 PANTHER PTHR23389 4 533 1.7E-201 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:3.40.50.10190 671 747 1.7E-22 T 23-04-2016 IPR001357 BRCT domain THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 PANTHER PTHR23389:SF9 4 533 1.7E-201 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 8 320 8.0E-128 T 23-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.150.20 437 505 2.4E-31 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:2.40.50.140 321 392 1.5E-34 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 333 348 - T 23-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 409 436 2.8E-10 T 23-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 674 744 8.6E-8 T 23-04-2016 IPR001357 BRCT domain THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.287.610 4 70 5.8E-30 T 23-04-2016 THIMO_RS04365 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 324 400 9.2E-36 T 23-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 PANTHER PTHR30203:SF15 4 460 2.8E-136 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Pfam PF02321 Outer membrane efflux protein 60 248 1.5E-17 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Pfam PF02321 Outer membrane efflux protein 280 457 3.9E-31 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Gene3D G3DSA:2.20.200.10 96 135 1.8E-17 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Gene3D G3DSA:2.20.200.10 309 344 1.8E-17 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Gene3D G3DSA:1.20.1600.10 49 86 1.8E-96 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Gene3D G3DSA:1.20.1600.10 136 308 1.8E-96 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 Gene3D G3DSA:1.20.1600.10 346 459 1.8E-96 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 459 1.1E-118 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 SUPERFAMILY SSF56954 1 460 1.96E-105 T 23-04-2016 THIMO_RS14940 778f9559f732b6044743cc7340cdb093 475 PANTHER PTHR30203 4 460 2.8E-136 T 23-04-2016 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 Gene3D G3DSA:3.40.50.1100 1 41 1.2E-78 T 23-04-2016 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 Gene3D G3DSA:3.40.50.1100 148 295 1.2E-78 T 23-04-2016 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 283 1.1E-66 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 PANTHER PTHR10314:SF100 3 296 3.6E-167 T 23-04-2016 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 SUPERFAMILY SSF53686 2 294 1.31E-91 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 294 1.1E-120 T 23-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 PANTHER PTHR10314 3 296 3.6E-167 T 23-04-2016 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 Gene3D G3DSA:3.40.50.1100 42 138 5.5E-38 T 23-04-2016 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 THIMO_RS07710 37c5a95acc7f7f269efa44df0219e16e 296 TIGRFAM TIGR01138 cysM: cysteine synthase B 5 294 6.4E-141 T 23-04-2016 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 Pfam PF02779 Transketolase, pyrimidine binding domain 360 532 8.3E-46 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 667 7.5E-303 T 23-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 ProSitePatterns PS00802 Transketolase signature 2. 474 490 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 Gene3D G3DSA:3.40.50.970 334 540 8.1E-78 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 Gene3D G3DSA:3.40.50.920 545 668 5.8E-48 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 Pfam PF02780 Transketolase, C-terminal domain 547 660 6.1E-14 T 23-04-2016 IPR033248 Transketolase, C-terminal domain THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 SUPERFAMILY SSF52922 540 668 6.14E-42 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 340 5.7E-163 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 SMART SM00861 361 532 4.7E-67 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 Gene3D G3DSA:3.40.50.970 4 327 5.7E-131 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 PANTHER PTHR11624:SF1 1 316 0.0 T 23-04-2016 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 PANTHER PTHR11624:SF1 335 668 0.0 T 23-04-2016 THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 PANTHER PTHR11624 1 316 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 PANTHER PTHR11624 335 668 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 SUPERFAMILY SSF52518 354 534 4.87E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS10430 ca32e3103d2e8e95e4ad252a59b11ece 668 SUPERFAMILY SSF52518 5 336 5.09E-121 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 SMART SM01086 336 432 5.1E-23 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 SMART SM00382 49 333 1.4E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 444 42.839 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Pfam PF07724 AAA domain (Cdc48 subfamily) 188 330 6.8E-39 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Gene3D G3DSA:1.10.8.60 336 444 4.0E-36 T 23-04-2016 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 444 7.1E-207 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 PANTHER PTHR11262 1 105 2.3E-203 T 23-04-2016 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 PANTHER PTHR11262 218 444 2.3E-203 T 23-04-2016 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Gene3D G3DSA:1.10.8.10 111 177 5.2E-28 T 23-04-2016 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Gene3D G3DSA:1.10.8.10 213 243 5.2E-28 T 23-04-2016 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 144 1.6E-7 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 PANTHER PTHR11262:SF3 1 105 2.3E-203 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 PANTHER PTHR11262:SF3 218 444 2.3E-203 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 336 407 5.8E-7 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Gene3D G3DSA:3.40.50.300 245 332 6.4E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 Gene3D G3DSA:3.40.50.300 4 110 6.4E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15605 c0a0376b186dbf98764e54e81ec8d857 444 SUPERFAMILY SSF52540 3 442 2.19E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11405 1b9e6a1e85280a9bacf9025c6349d712 172 Pfam PF02620 Uncharacterized ACR, COG1399 60 148 1.4E-11 T 23-04-2016 IPR003772 Protein of unknown function DUF177 THIMO_RS11405 1b9e6a1e85280a9bacf9025c6349d712 172 PANTHER PTHR38099 1 169 9.8E-28 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 22 432 4.8E-130 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 ProSitePatterns PS00756 Protein secY signature 2. 176 193 - T 23-04-2016 IPR030659 SecY conserved site THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 ProSitePatterns PS00755 Protein secY signature 1. 78 97 - T 23-04-2016 IPR030659 SecY conserved site THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 118 141 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 183 206 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 405 423 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 373 391 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 25 43 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 77 97 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 275 294 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 157 182 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 318 340 5.1E-88 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 SUPERFAMILY SSF103491 3 427 4.18E-131 T 23-04-2016 IPR023201 SecY subunit domain THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PIRSF PIRSF004557 2 443 3.1E-125 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 Hamap MF_01465 Protein translocase subunit SecY [secY]. 12 436 29.152 T 23-04-2016 IPR026593 Protein translocase subunit SecY THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 Gene3D G3DSA:1.10.3370.10 19 440 7.5E-167 T 23-04-2016 IPR023201 SecY subunit domain THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PANTHER PTHR10906 19 450 1.8E-220 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 PANTHER PTHR10906:SF2 19 450 1.8E-220 T 23-04-2016 THIMO_RS13530 d180ce511238944331e0fd70b5d52157 450 Pfam PF00344 SecY translocase 78 420 1.6E-115 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 PANTHER PTHR36118 4 203 9.2E-53 T 23-04-2016 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 Pfam PF04205 FMN-binding domain 103 192 2.6E-18 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 13 197 1.9E-59 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 SMART SM00900 103 195 7.8E-33 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 5 197 24.007 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 PIRSF PIRSF006091 1 203 6.2E-67 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS04600 819d3d15a55f1b34297c55040a99c371 203 PANTHER PTHR36118:SF1 4 203 9.2E-53 T 23-04-2016 THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 PIRSF PIRSF006404 13 405 7.0E-97 T 23-04-2016 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF13398 Peptidase M50B-like 64 139 3.1E-6 T 23-04-2016 THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 Gene3D G3DSA:3.20.20.70 279 396 3.3E-24 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF00571 CBS domain 341 397 1.3E-11 T 23-04-2016 IPR000644 CBS domain THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF00571 CBS domain 279 330 5.0E-5 T 23-04-2016 IPR000644 CBS domain THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF02163 Peptidase family M50 164 207 5.3E-7 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 SMART SM00116 285 333 11.0 T 23-04-2016 IPR000644 CBS domain THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 SMART SM00116 350 397 2.5E-8 T 23-04-2016 IPR000644 CBS domain THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 PANTHER PTHR11911 281 399 1.0E-22 T 23-04-2016 THIMO_RS08895 5ae61a065c0091f00d1bccf076fc71a8 407 SUPERFAMILY SSF54631 274 396 1.01E-22 T 23-04-2016 THIMO_RS06550 a3d84d1e51315e53bc7b5fa4cbc4feea 193 Pfam PF08750 CNP1-like family 43 178 4.6E-40 T 23-04-2016 IPR014861 Uncharacterised domain CNP1 THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 Gene3D G3DSA:1.10.3210.10 794 913 0.001 T 23-04-2016 IPR006674 HD domain THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF52540 290 430 4.42E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF52540 149 251 4.42E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF52540 51 108 4.42E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF109604 871 916 1.0E-5 T 23-04-2016 THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF109604 792 831 1.0E-5 T 23-04-2016 THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 TIGRFAM TIGR02621 cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc 9 567 3.2E-99 T 23-04-2016 IPR013444 Helicase Cas3, CRISPR-associated, Anaes-subtype THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 Gene3D G3DSA:3.40.50.300 309 462 1.9E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 793 925 1.0E-13 T 23-04-2016 IPR006483 CRISPR-associated Cas3-HD domain THIMO_RS06110 9b788e2d6ee0f193d28683a3eafcb69c 997 Gene3D G3DSA:3.40.50.300 21 254 1.5E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04850 dfca3c6c7bbede94251e2ed3787bf19f 197 Gene3D G3DSA:3.90.180.10 59 95 1.7E-7 T 23-04-2016 IPR011032 GroES-like THIMO_RS04850 dfca3c6c7bbede94251e2ed3787bf19f 197 SUPERFAMILY SSF50129 60 98 8.62E-9 T 23-04-2016 IPR011032 GroES-like THIMO_RS13240 d803e4c6275dee35b8ff682e36df5285 378 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 28 373 3.6E-133 T 23-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 THIMO_RS13240 d803e4c6275dee35b8ff682e36df5285 378 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 331 355 - T 23-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 THIMO_RS13240 d803e4c6275dee35b8ff682e36df5285 378 PANTHER PTHR30474:SF1 24 376 1.0E-155 T 23-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 THIMO_RS13240 d803e4c6275dee35b8ff682e36df5285 378 Pfam PF01098 Cell cycle protein 31 374 2.0E-110 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 THIMO_RS13240 d803e4c6275dee35b8ff682e36df5285 378 PANTHER PTHR30474 24 376 1.0E-155 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 THIMO_RS08110 903a4b49d643348dedb613eb6ff8b4e7 321 Gene3D G3DSA:3.40.50.970 3 320 1.1E-123 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS08110 903a4b49d643348dedb613eb6ff8b4e7 321 PANTHER PTHR11516 9 321 3.6E-125 T 23-04-2016 THIMO_RS08110 903a4b49d643348dedb613eb6ff8b4e7 321 Pfam PF00676 Dehydrogenase E1 component 14 311 5.0E-78 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 THIMO_RS08110 903a4b49d643348dedb613eb6ff8b4e7 321 SUPERFAMILY SSF52518 4 320 2.16E-98 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03575 671f2aa8469516c5dfbe827d244b419a 228 PANTHER PTHR42208:SF1 1 224 6.0E-53 T 23-04-2016 THIMO_RS03575 671f2aa8469516c5dfbe827d244b419a 228 PANTHER PTHR42208 1 224 6.0E-53 T 23-04-2016 THIMO_RS03575 671f2aa8469516c5dfbe827d244b419a 228 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 9 219 2.1E-53 T 23-04-2016 THIMO_RS09430 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 PANTHER PTHR12231 37 121 5.9E-14 T 23-04-2016 THIMO_RS09430 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 Gene3D G3DSA:3.40.250.10 14 121 5.9E-30 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS09430 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 SMART SM00450 21 118 9.6E-26 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS09430 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 Pfam PF00581 Rhodanese-like domain 28 114 2.8E-14 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS09430 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 SUPERFAMILY SSF52821 9 121 6.68E-32 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS13250 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 PANTHER PTHR37484 1 162 1.6E-47 T 23-04-2016 THIMO_RS13250 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 PIRSF PIRSF018472 3 161 8.5E-50 T 23-04-2016 IPR026034 Cell shape-determining protein MreD, proteobacterial type THIMO_RS13250 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 10 153 1.3E-34 T 23-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 THIMO_RS13250 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 Pfam PF04093 rod shape-determining protein MreD 9 154 4.2E-26 T 23-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 Gene3D G3DSA:1.10.3720.10 238 443 1.2E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 PANTHER PTHR30465:SF9 225 447 3.9E-72 T 23-04-2016 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 PANTHER PTHR30465:SF9 1 108 3.9E-72 T 23-04-2016 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 SUPERFAMILY SSF161098 239 428 4.71E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 263 446 1.8E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 PANTHER PTHR30465 225 447 3.9E-72 T 23-04-2016 THIMO_RS10335 cf358b03e727d37aa8ef1097cc2dbd0d 448 PANTHER PTHR30465 1 108 3.9E-72 T 23-04-2016 THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 23-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 TIGRFAM TIGR00615 recR: recombination protein RecR 5 196 9.6E-74 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 SUPERFAMILY SSF111304 5 198 6.67E-70 T 23-04-2016 IPR023627 Recombination protein RecR THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 Pfam PF13662 Toprim domain 81 171 9.3E-22 T 23-04-2016 IPR006171 Toprim domain THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 PANTHER PTHR30446 1 198 2.9E-103 T 23-04-2016 THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 Pfam PF02132 RecR protein 40 78 7.3E-13 T 23-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 PANTHER PTHR30446:SF0 1 198 2.9E-103 T 23-04-2016 THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 SMART SM00493 80 165 8.1E-9 T 23-04-2016 IPR006171 Toprim domain THIMO_RS09585 2fc163bba8c4bbd953c539b569e5b4f7 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 96.779 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 THIMO_RS06665 f2f8e0427f695191dd0b15dec0fc6923 128 Gene3D G3DSA:1.20.1260.10 11 75 1.4E-13 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS06665 f2f8e0427f695191dd0b15dec0fc6923 128 TIGRFAM TIGR04535 ferrit_encaps: ferritin-like protein 9 125 3.2E-40 T 23-04-2016 IPR030907 Ferritin-like protein THIMO_RS06665 f2f8e0427f695191dd0b15dec0fc6923 128 SUPERFAMILY SSF47240 12 94 1.13E-21 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 TIGRFAM TIGR01391 dnaG: DNA primase 4 414 1.3E-144 T 23-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Hamap MF_00974 DNA primase [dnaG]. 4 573 29.149 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF13155 Toprim-like 260 345 1.1E-16 T 23-04-2016 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 SUPERFAMILY SSF57783 4 99 5.61E-37 T 23-04-2016 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 PANTHER PTHR30313 3 416 4.6E-153 T 23-04-2016 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF08275 DNA primase catalytic core, N-terminal domain 123 248 6.9E-44 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 SMART SM00493 256 327 9.5E-21 T 23-04-2016 IPR006171 Toprim domain THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF10410 DnaB-helicase binding domain of primase 366 419 7.3E-10 T 23-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:1.10.860.10 436 570 5.3E-28 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 SUPERFAMILY SSF56731 112 419 1.96E-106 T 23-04-2016 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF08278 DNA primase DnaG DnaB-binding 445 570 4.9E-21 T 23-04-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:3.90.980.10 112 237 4.5E-47 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 SUPERFAMILY SSF117023 442 570 1.12E-20 T 23-04-2016 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:3.40.1360.10 238 360 5.8E-42 T 23-04-2016 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:3.90.580.10 1 99 2.0E-41 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 SMART SM00766 444 572 1.0E-11 T 23-04-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF01807 CHC2 zinc finger 6 100 9.3E-40 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 SMART SM00400 36 90 5.5E-33 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 THIMO_RS02635 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:1.20.50.20 365 419 1.3E-15 T 23-04-2016 THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 SUPERFAMILY SSF51735 1 159 5.74E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 Gene3D G3DSA:3.40.50.720 1 161 7.6E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 PIRSF PIRSF000103 1 284 3.0E-77 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 Gene3D G3DSA:1.10.1040.10 162 282 5.9E-21 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 153 4.2E-34 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 PANTHER PTHR22981 1 282 9.3E-63 T 23-04-2016 THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 161 281 5.4E-12 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 THIMO_RS00650 e1a9b1077c502b81a83b3422559a96de 285 SUPERFAMILY SSF48179 160 282 3.06E-22 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 218 526 3.3E-97 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 201 34.403 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PIRSF PIRSF036936 1 527 3.6E-251 T 23-04-2016 IPR014640 Imidazole glycerol phosphate synthase HisHF GO:0000105|GO:0000107|GO:0016763|GO:0016833 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|KEGG: 00620+4.1.3.-|KEGG: 00624+4.1.3.-|UniPathway: UPA00031 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 SUPERFAMILY SSF51366 217 526 1.18E-68 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 Gene3D G3DSA:3.40.50.880 1 201 2.4E-79 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 Gene3D G3DSA:3.20.20.70 220 526 1.3E-122 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PANTHER PTHR21235 17 103 1.0E-207 T 23-04-2016 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PANTHER PTHR21235 170 186 1.0E-207 T 23-04-2016 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PANTHER PTHR21235 252 527 1.0E-207 T 23-04-2016 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 Pfam PF00977 Histidine biosynthesis protein 221 509 6.2E-52 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 SUPERFAMILY SSF52317 2 200 3.93E-54 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 Pfam PF00117 Glutamine amidotransferase class-I 4 198 2.0E-18 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 199 1.9E-62 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PANTHER PTHR21235:SF2 17 103 1.0E-207 T 23-04-2016 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PANTHER PTHR21235:SF2 170 186 1.0E-207 T 23-04-2016 THIMO_RS08885 6a8484e17ba41eb0823d5803e9156410 527 PANTHER PTHR21235:SF2 252 527 1.0E-207 T 23-04-2016 THIMO_RS18335 4b7097048d3aed71765d2dc7ea7cc080 94 PANTHER PTHR16255 9 88 1.4E-13 T 23-04-2016 THIMO_RS18335 4b7097048d3aed71765d2dc7ea7cc080 94 Pfam PF02582 Uncharacterised ACR, YagE family COG1723 3 40 1.3E-5 T 23-04-2016 IPR003734 Domain of unknown function DUF155 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 PIRSF PIRSF000505 6 443 5.4E-117 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 14 430 2.7E-116 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 SUPERFAMILY SSF55205 11 437 8.01E-124 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 Gene3D G3DSA:3.65.10.10 28 236 4.7E-58 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 ProSitePatterns PS00885 EPSP synthase signature 2. 347 365 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 PANTHER PTHR21090 8 442 2.2E-169 T 23-04-2016 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 ProSitePatterns PS00104 EPSP synthase signature 1. 95 109 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 PANTHER PTHR21090:SF5 8 442 2.2E-169 T 23-04-2016 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 16 439 32.285 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 20 436 2.5E-121 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS08975 97b05d87a249cad7174a5eccf67c2d02 443 Gene3D G3DSA:3.65.10.10 237 437 8.0E-52 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 THIMO_RS04605 a4a801e804ca6823b067b56d0d7474bd 235 PANTHER PTHR30586:SF0 2 223 2.5E-111 T 23-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 THIMO_RS04605 a4a801e804ca6823b067b56d0d7474bd 235 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 213 27.056 T 23-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 THIMO_RS04605 a4a801e804ca6823b067b56d0d7474bd 235 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 203 7.0E-63 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS04605 a4a801e804ca6823b067b56d0d7474bd 235 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 9 211 1.8E-80 T 23-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 THIMO_RS04605 a4a801e804ca6823b067b56d0d7474bd 235 PANTHER PTHR30586 2 223 2.5E-111 T 23-04-2016 THIMO_RS04605 a4a801e804ca6823b067b56d0d7474bd 235 PIRSF PIRSF006102 3 222 7.6E-77 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 SMART SM00863 644 687 9.5E-20 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 Pfam PF02272 DHHA1 domain 791 857 7.7E-18 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF50447 444 543 4.53E-19 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF55681 3 245 1.81E-108 T 23-04-2016 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PANTHER PTHR11777:SF9 1 867 0.0 T 23-04-2016 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF101353 246 450 2.48E-61 T 23-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PANTHER PTHR11777 1 867 0.0 T 23-04-2016 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 Pfam PF01411 tRNA synthetases class II (A) 6 546 9.4E-223 T 23-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 866 202.836 T 23-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF55186 543 702 4.06E-51 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 644 687 5.1E-16 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 Gene3D G3DSA:3.30.930.10 2 242 5.4E-116 T 23-04-2016 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 845 0.0 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 272 288 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 296 309 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11610 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 3.4E-33 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 SUPERFAMILY SSF55874 5 205 3.01E-54 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11450 bec06872cad09c135c896421e050de41 616 SMART SM00853 429 572 1.1E-48 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 SUPERFAMILY SSF118116 425 614 7.72E-58 T 23-04-2016 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 6 612 28.274 T 23-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 218 334 3.8E-36 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 Pfam PF08676 MutL C terminal dimerisation domain 425 572 5.0E-46 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 SMART SM01340 217 335 9.6E-53 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 Gene3D G3DSA:3.30.565.10 7 206 1.2E-74 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11450 bec06872cad09c135c896421e050de41 616 Gene3D G3DSA:3.30.230.10 207 334 7.9E-35 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS11450 bec06872cad09c135c896421e050de41 616 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 7 315 3.4E-95 T 23-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 98 104 - T 23-04-2016 IPR014762 DNA mismatch repair, conserved site THIMO_RS11450 bec06872cad09c135c896421e050de41 616 SUPERFAMILY SSF54211 198 335 1.29E-34 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS11450 bec06872cad09c135c896421e050de41 616 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 130 1.3E-9 T 23-04-2016 THIMO_RS11450 bec06872cad09c135c896421e050de41 616 PANTHER PTHR10073 8 614 7.8E-164 T 23-04-2016 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 1.3E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 28 46 1.3E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PANTHER PTHR11649 3 151 1.1E-256 T 23-04-2016 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PANTHER PTHR11649 266 615 1.1E-256 T 23-04-2016 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PANTHER PTHR11649 676 743 1.1E-256 T 23-04-2016 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 SUPERFAMILY SSF52540 5 168 5.26E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 162 3.4E-14 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF07670 Nucleoside recognition 516 706 2.8E-33 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF07670 Nucleoside recognition 356 448 3.2E-15 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF02421 Ferrous iron transport protein B 6 162 1.0E-64 T 23-04-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PANTHER PTHR11649:SF37 3 151 1.1E-256 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PANTHER PTHR11649:SF37 266 615 1.1E-256 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 PANTHER PTHR11649:SF37 676 743 1.1E-256 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 Gene3D G3DSA:3.40.50.300 3 169 7.9E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 11 705 2.0E-187 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS08570 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF07664 Ferrous iron transport protein B C terminus 459 511 2.3E-22 T 23-04-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 THIMO_RS13205 d7f790be8a749a4f1180dce52c5ec626 1249 PANTHER PTHR23304 14 1246 0.0 T 23-04-2016 THIMO_RS13205 d7f790be8a749a4f1180dce52c5ec626 1249 PANTHER PTHR23304:SF109 14 1246 0.0 T 23-04-2016 THIMO_RS13205 d7f790be8a749a4f1180dce52c5ec626 1249 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 15 777 7.0E-271 T 23-04-2016 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS13205 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF11965 Domain of unknown function (DUF3479) 15 176 7.3E-49 T 23-04-2016 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS13205 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF02514 CobN/Magnesium Chelatase 180 1225 0.0 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 THIMO_RS14385 d7f790be8a749a4f1180dce52c5ec626 1249 PANTHER PTHR23304 14 1246 0.0 T 23-04-2016 THIMO_RS14385 d7f790be8a749a4f1180dce52c5ec626 1249 PANTHER PTHR23304:SF109 14 1246 0.0 T 23-04-2016 THIMO_RS14385 d7f790be8a749a4f1180dce52c5ec626 1249 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 15 777 7.0E-271 T 23-04-2016 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14385 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF11965 Domain of unknown function (DUF3479) 15 176 7.3E-49 T 23-04-2016 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14385 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF02514 CobN/Magnesium Chelatase 180 1225 0.0 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 SUPERFAMILY SSF55811 19 158 1.03E-22 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 ProSitePatterns PS00893 Nudix box signature. 52 73 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 PRINTS PR01404 DATP pyrophosphohydrolase signature 18 35 2.1E-7 T 23-04-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 PRINTS PR01404 DATP pyrophosphohydrolase signature 82 101 2.1E-7 T 23-04-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 PRINTS PR01404 DATP pyrophosphohydrolase signature 139 152 2.1E-7 T 23-04-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 Pfam PF00293 NUDIX domain 20 139 5.9E-15 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 PANTHER PTHR22769:SF28 19 153 6.3E-28 T 23-04-2016 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 PANTHER PTHR22769 19 153 6.3E-28 T 23-04-2016 THIMO_RS14490 7d7ea338ae1f7ce91500acde193f55f6 162 Gene3D G3DSA:3.90.79.10 19 153 6.0E-22 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS08580 d01b5973d5f464c4e6efba1398921a0b 70 SUPERFAMILY SSF50037 3 68 5.26E-11 T 23-04-2016 IPR008988 Transcriptional repressor, C-terminal THIMO_RS08580 d01b5973d5f464c4e6efba1398921a0b 70 SMART SM00899 1 68 4.0E-8 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 THIMO_RS08580 d01b5973d5f464c4e6efba1398921a0b 70 Pfam PF04023 FeoA domain 3 67 6.0E-13 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 THIMO_RS08580 d01b5973d5f464c4e6efba1398921a0b 70 Gene3D G3DSA:2.30.30.90 22 67 0.001 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 16 207 2.4E-40 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:1.10.8.60 507 590 1.1E-34 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PANTHER PTHR10046:SF43 5 782 0.0 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 682 690 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 SUPERFAMILY SSF52540 321 592 1.42E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 576 777 1.8E-96 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 SMART SM00464 15 208 3.2E-76 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PANTHER PTHR10046 5 782 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PIRSF PIRSF001174 2 781 0.0 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:3.40.50.300 323 506 1.2E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 SUPERFAMILY SSF88697 15 207 1.69E-49 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 358 495 1.2E-18 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 SUPERFAMILY SSF54211 601 776 4.55E-60 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 679 698 3.1E-55 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 601 617 3.1E-55 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 709 728 3.1E-55 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 362 381 3.1E-55 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 732 750 3.1E-55 T 23-04-2016 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 SMART SM00382 354 498 1.4E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:3.30.230.10 596 777 5.4E-75 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 TIGRFAM TIGR00763 lon: endopeptidase La 17 776 3.1E-300 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 THIMO_RS02040 b28d29f97336800af51cdb83e5586798 815 Hamap MF_01973 Lon protease [lon]. 16 778 71.803 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 THIMO_RS16085 a458983b560d2d447025e333596fbe26 326 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 321 38.89 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 THIMO_RS16085 a458983b560d2d447025e333596fbe26 326 SUPERFAMILY SSF52540 48 188 1.04E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16085 a458983b560d2d447025e333596fbe26 326 PANTHER PTHR30160 6 325 1.1E-87 T 23-04-2016 THIMO_RS16085 a458983b560d2d447025e333596fbe26 326 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 20 312 2.9E-69 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 THIMO_RS16085 a458983b560d2d447025e333596fbe26 326 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 14 320 2.7E-105 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 THIMO_RS16085 a458983b560d2d447025e333596fbe26 326 PANTHER PTHR30160:SF13 6 325 1.1E-87 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 ProSitePatterns PS00211 ABC transporters family signature. 1728 1742 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 ProSitePatterns PS00211 ABC transporters family signature. 1379 1393 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 386 403 5.2E-44 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 96 133 5.2E-44 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 1080 1114 7.3E-51 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 244 277 5.2E-44 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 1237 1369 7.3E-51 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 435 487 5.2E-44 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 9 209 2.99E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 456 579 2.99E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.30.1490.20 165 231 7.2E-5 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 994 1189 4.44E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.10.8.280 280 385 7.5E-17 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 8 949 6.1E-267 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 611 690 4.2E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 3 55 1.2E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 1492 1569 6.8E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 488 605 1.2E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 978 1043 2.9E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 1719 1848 6.8E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 841 962 4.2E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 1370 1488 2.9E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 1512 1552 2.55E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 1594 1718 8.1E-45 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 704 840 4.9E-37 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SMART SM00382 1523 1811 0.0032 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SMART SM00382 643 930 0.1 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SMART SM00382 1008 1456 1.8 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 626 935 1.81E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282 1573 1850 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282 4 403 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282 435 507 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282 1383 1554 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282:SF2 1573 1850 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282:SF2 4 403 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282:SF2 435 507 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 PANTHER PTHR32282:SF2 1383 1554 0.0 T 23-04-2016 THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 1322 1461 4.44E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10260 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 1581 1818 2.55E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 Gene3D G3DSA:1.10.10.10 84 160 1.2E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 PANTHER PTHR34298:SF2 1 176 4.2E-75 T 23-04-2016 THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 169 3.4E-54 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 6 177 4.0E-39 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 PIRSF PIRSF019345 1 180 1.9E-66 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 SUPERFAMILY SSF46785 84 160 1.29E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 PANTHER PTHR34298 1 176 4.2E-75 T 23-04-2016 THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 SUPERFAMILY SSF46785 2 83 1.1E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04655 9b164813c827c5c47a2175b2904f9ca8 181 Gene3D G3DSA:1.10.10.10 5 82 4.0E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01905 f09855814f1feaf68342a0433192b0c2 295 Gene3D G3DSA:1.10.472.60 82 183 1.8E-17 T 23-04-2016 IPR023169 UPF0413, central domain THIMO_RS01905 f09855814f1feaf68342a0433192b0c2 295 Pfam PF09012 FeoC like transcriptional regulator 233 281 1.2E-4 T 23-04-2016 IPR015102 Transcriptional regulator HTH-type, FeoC THIMO_RS01905 f09855814f1feaf68342a0433192b0c2 295 Gene3D G3DSA:3.40.30.10 6 81 2.2E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS01905 f09855814f1feaf68342a0433192b0c2 295 Pfam PF13743 Thioredoxin 11 190 1.4E-26 T 23-04-2016 THIMO_RS01905 f09855814f1feaf68342a0433192b0c2 295 SUPERFAMILY SSF52833 7 219 2.45E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 334 4.9E-71 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 SUPERFAMILY SSF111369 43 259 3.53E-36 T 23-04-2016 THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 39 252 8.3E-25 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 Gene3D G3DSA:2.40.50.100 148 179 6.4E-15 T 23-04-2016 THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 Gene3D G3DSA:2.40.50.100 54 87 6.4E-15 T 23-04-2016 THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 PANTHER PTHR30469:SF16 27 345 8.5E-92 T 23-04-2016 THIMO_RS09240 dd211bc3de4cd3ba9d27728c032b3c30 352 PANTHER PTHR30469 27 345 8.5E-92 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 SUPERFAMILY SSF48208 2414 2934 1.5E-96 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469 1340 1941 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469 400 1322 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469 1957 2941 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469 32 371 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 SUPERFAMILY SSF74650 1639 1903 8.79E-87 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 SMART SM01068 1629 1690 7.4E-25 T 23-04-2016 IPR009342 Putative carbohydrate binding domain THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 SMART SM01068 2134 2199 8.1E-31 T 23-04-2016 IPR009342 Putative carbohydrate binding domain THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF10091 Putative glucoamylase 1388 1584 1.6E-11 T 23-04-2016 IPR019282 Domain of unknown function DUF2329 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:2.60.420.10 2847 2917 1.1E-12 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 SUPERFAMILY SSF74650 2134 2397 1.16E-87 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 2865 2915 7.5E-5 T 23-04-2016 IPR005194 Glycoside hydrolase family 65, C-terminal THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2429 2855 2.0E-121 T 23-04-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF06165 Glycosyltransferase family 36 1651 1901 4.2E-84 T 23-04-2016 IPR010383 Glycosyl hydrolase 94 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF06165 Glycosyltransferase family 36 2157 2396 1.6E-80 T 23-04-2016 IPR010383 Glycosyl hydrolase 94 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:2.70.98.40 1641 1935 3.5E-108 T 23-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:2.70.98.40 2134 2458 2.3E-90 T 23-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:3.90.1200.10 135 219 4.6E-6 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469:SF2 1340 1941 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469:SF2 400 1322 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469:SF2 1957 2941 0.0 T 23-04-2016 THIMO_RS11905 f0be6139321dafd62c9d35ee63c5ff50 2948 PANTHER PTHR37469:SF2 32 371 0.0 T 23-04-2016 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 Gene3D G3DSA:1.20.85.10 173 280 6.1E-43 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PANTHER PTHR33149 63 201 1.1E-24 T 23-04-2016 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 TIGRFAM TIGR01157 pufL: photosynthetic reaction center L subunit 35 279 5.0E-104 T 23-04-2016 IPR005871 Photosynthetic reaction centre, L subunit GO:0019684|GO:0030077|GO:0045156 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 179 205 1.6E-50 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 123 145 1.6E-50 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 34 55 1.6E-50 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 232 257 1.6E-50 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 90 118 1.6E-50 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 PANTHER PTHR33149:SF2 63 201 1.1E-24 T 23-04-2016 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 SUPERFAMILY SSF81483 3 280 1.05E-92 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 173 199 - T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 Pfam PF00124 Photosynthetic reaction centre protein 30 279 3.6E-90 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14260 f94a8f8245214601ec513730d5b09363 280 Gene3D G3DSA:1.20.85.10 5 169 6.2E-53 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS09035 deba97bf4182975a21f3df331dc29e3d 209 Pfam PF09976 Tetratricopeptide repeat-like domain 15 206 9.2E-55 T 23-04-2016 IPR018704 Tetratricopeptide repeat-like domain THIMO_RS09035 deba97bf4182975a21f3df331dc29e3d 209 Gene3D G3DSA:1.25.40.10 57 199 7.2E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS09035 deba97bf4182975a21f3df331dc29e3d 209 PANTHER PTHR38035 2 207 2.4E-50 T 23-04-2016 THIMO_RS09035 deba97bf4182975a21f3df331dc29e3d 209 PIRSF PIRSF006170 1 208 2.8E-58 T 23-04-2016 IPR026039 Uncharacterised protein family UPF0070 THIMO_RS09035 deba97bf4182975a21f3df331dc29e3d 209 SUPERFAMILY SSF48452 37 191 5.61E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 19 291 3.1E-63 T 23-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 PANTHER PTHR30389:SF1 12 515 3.4E-285 T 23-04-2016 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 PANTHER PTHR30389 12 515 3.4E-285 T 23-04-2016 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 Pfam PF05683 Fumarase C-terminus 296 498 7.4E-79 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 PIRSF PIRSF001394 7 514 6.4E-206 T 23-04-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 333 496 1.1E-43 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 Pfam PF05681 Fumarate hydratase (Fumerase) 19 292 8.8E-99 T 23-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 SUPERFAMILY SSF117457 325 496 1.09E-58 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 THIMO_RS13485 749908a18346117154d96eb3e2bc1c80 515 Gene3D G3DSA:3.20.130.10 310 497 3.4E-67 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 THIMO_RS15495 b8cf57ad53f5fe3e6cc42ec925dea4f7 164 SUPERFAMILY SSF53850 41 161 4.07E-11 T 23-04-2016 THIMO_RS15495 b8cf57ad53f5fe3e6cc42ec925dea4f7 164 Gene3D G3DSA:3.40.190.10 46 158 1.5E-7 T 23-04-2016 THIMO_RS04975 a60720c6326b7bb1bebaf9b93bef50d2 204 SUPERFAMILY SSF52540 5 191 4.17E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04975 a60720c6326b7bb1bebaf9b93bef50d2 204 PANTHER PTHR10695 6 196 9.0E-70 T 23-04-2016 THIMO_RS04975 a60720c6326b7bb1bebaf9b93bef50d2 204 Gene3D G3DSA:3.40.50.300 4 196 1.4E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04975 a60720c6326b7bb1bebaf9b93bef50d2 204 Pfam PF01121 Dephospho-CoA kinase 6 178 1.1E-62 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 THIMO_RS04975 a60720c6326b7bb1bebaf9b93bef50d2 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 6 188 3.5E-55 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 THIMO_RS04975 a60720c6326b7bb1bebaf9b93bef50d2 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 3 197 27.907 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 THIMO_RS00810 4014a6b80ec936891f7eb2491e239b0f 788 Pfam PF00092 von Willebrand factor type A domain 596 764 5.9E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS00810 4014a6b80ec936891f7eb2491e239b0f 788 SUPERFAMILY SSF53300 594 782 7.02E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS00810 4014a6b80ec936891f7eb2491e239b0f 788 Gene3D G3DSA:3.40.50.410 596 761 8.9E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS00810 4014a6b80ec936891f7eb2491e239b0f 788 PANTHER PTHR41248:SF1 491 786 4.1E-29 T 23-04-2016 THIMO_RS00810 4014a6b80ec936891f7eb2491e239b0f 788 PANTHER PTHR41248 491 786 4.1E-29 T 23-04-2016 THIMO_RS00810 4014a6b80ec936891f7eb2491e239b0f 788 SMART SM00327 593 787 4.7E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS04885 4bb0cf5ef4c626bfc491040cb0f40368 303 Pfam PF00665 Integrase core domain 128 244 1.1E-27 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS04885 4bb0cf5ef4c626bfc491040cb0f40368 303 Gene3D G3DSA:3.30.420.10 122 284 2.5E-36 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS04885 4bb0cf5ef4c626bfc491040cb0f40368 303 PANTHER PTHR32552 4 293 7.4E-65 T 23-04-2016 THIMO_RS04885 4bb0cf5ef4c626bfc491040cb0f40368 303 Pfam PF13276 HTH-like domain 47 103 3.9E-15 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS04885 4bb0cf5ef4c626bfc491040cb0f40368 303 SUPERFAMILY SSF53098 122 286 2.88E-37 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS14245 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14245 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14245 4ac5f41c74c78439c4975fe6a0b00242 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.5E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14245 4ac5f41c74c78439c4975fe6a0b00242 47 SUPERFAMILY SSF56918 4 47 1.81E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14245 4ac5f41c74c78439c4975fe6a0b00242 47 Gene3D G3DSA:1.20.5.250 8 47 9.3E-15 T 23-04-2016 THIMO_RS14210 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14210 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14210 4ac5f41c74c78439c4975fe6a0b00242 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.5E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14210 4ac5f41c74c78439c4975fe6a0b00242 47 SUPERFAMILY SSF56918 4 47 1.81E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14210 4ac5f41c74c78439c4975fe6a0b00242 47 Gene3D G3DSA:1.20.5.250 8 47 9.3E-15 T 23-04-2016 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF81296 11 148 2.16E-28 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 Gene3D G3DSA:3.20.20.80 154 577 8.4E-119 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 SMART SM00642 135 569 2.3E-9 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 Pfam PF00128 Alpha amylase, catalytic domain 178 275 2.4E-11 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 Gene3D G3DSA:2.60.40.10 10 153 3.0E-31 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 Gene3D G3DSA:2.60.40.1180 590 688 8.5E-17 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 14 663 1.6E-202 T 23-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 17 108 2.4E-11 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF51011 590 688 1.15E-17 T 23-04-2016 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 PANTHER PTHR10357 3 689 3.7E-269 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF51445 138 472 8.53E-126 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF51445 501 576 8.53E-126 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS04380 5ea0f69145d892c195cad9aef9590690 692 PANTHER PTHR10357:SF74 3 689 3.7E-269 T 23-04-2016 THIMO_RS12915 ab3c0abf21053a32670db548ddb52e9f 577 Pfam PF03169 OPT oligopeptide transporter protein 6 295 1.6E-40 T 23-04-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 THIMO_RS12915 ab3c0abf21053a32670db548ddb52e9f 577 Pfam PF03169 OPT oligopeptide transporter protein 318 569 3.4E-41 T 23-04-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 THIMO_RS12915 ab3c0abf21053a32670db548ddb52e9f 577 PANTHER PTHR31645 3 577 1.9E-60 T 23-04-2016 THIMO_RS12915 ab3c0abf21053a32670db548ddb52e9f 577 PANTHER PTHR31645:SF0 3 577 1.9E-60 T 23-04-2016 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 16 254 5.7E-61 T 23-04-2016 IPR013360 Pilus biogenesis/stability type IV, PilW THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 85 118 0.031 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 51 84 0.018 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 189 222 10.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 155 188 11.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 SUPERFAMILY SSF48452 48 220 2.59E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 Pfam PF13432 Tetratricopeptide repeat 56 119 1.3E-5 T 23-04-2016 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 PANTHER PTHR23083 45 262 3.4E-30 T 23-04-2016 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 Gene3D G3DSA:1.25.40.10 49 259 3.2E-33 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS09050 b1ed7ba673ccf7389cf9e9a6eafee272 262 Pfam PF14559 Tetratricopeptide repeat 176 224 3.8E-6 T 23-04-2016 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 PIRSF PIRSF000429 1 394 7.5E-136 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Pfam PF02803 Thiolase, C-terminal domain 271 393 1.6E-53 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Gene3D G3DSA:3.40.47.10 4 124 2.6E-81 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Gene3D G3DSA:3.40.47.10 195 276 2.6E-81 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 PANTHER PTHR18919 1 394 1.8E-230 T 23-04-2016 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 PANTHER PTHR18919:SF95 1 394 1.8E-230 T 23-04-2016 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 SUPERFAMILY SSF53901 5 271 1.38E-90 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 392 1.7E-149 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Gene3D G3DSA:3.40.47.10 278 393 1.2E-70 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Gene3D G3DSA:3.40.47.10 143 194 1.2E-70 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Pfam PF00108 Thiolase, N-terminal domain 5 264 2.1E-110 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 THIMO_RS07845 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 SUPERFAMILY SSF53901 272 393 6.06E-46 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.30.150.10 620 684 7.7E-26 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856 346 416 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856 1079 1173 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856 445 753 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856 5 236 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856 1224 1384 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856 771 958 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1384 12.381 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1381 0.0 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856:SF20 346 416 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856:SF20 1079 1173 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856:SF20 445 753 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856:SF20 5 236 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856:SF20 1224 1384 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 PANTHER PTHR20856:SF20 771 958 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04563 RNA polymerase beta subunit 27 527 2.9E-41 T 23-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1108 1120 - T 23-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.50.150 1090 1104 5.0E-57 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.50.150 856 965 5.0E-57 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF10385 RNA polymerase beta subunit external 1 domain 619 684 3.3E-23 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.270.10 821 848 5.2E-88 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.270.10 1105 1284 5.2E-88 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 SUPERFAMILY SSF64484 12 232 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 SUPERFAMILY SSF64484 349 967 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 SUPERFAMILY SSF64484 1084 1383 0.0 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1110.10 159 236 2.7E-64 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1110.10 352 472 2.7E-64 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04560 RNA polymerase Rpb2, domain 7 1308 1382 5.7E-27 T 23-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF00562 RNA polymerase Rpb2, domain 6 746 1306 3.0E-162 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04565 RNA polymerase Rpb2, domain 3 541 608 2.4E-30 T 23-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.50.100 742 820 6.3E-30 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04561 RNA polymerase Rpb2, domain 2 451 482 7.7E-5 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04561 RNA polymerase Rpb2, domain 2 158 230 4.4E-6 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1100.10 21 157 2.1E-148 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1100.10 687 741 2.1E-148 T 23-04-2016 THIMO_RS13665 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1100.10 473 619 2.1E-148 T 23-04-2016 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 Gene3D G3DSA:3.30.360.10 158 310 6.3E-56 T 23-04-2016 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 PANTHER PTHR32338:SF8 1 342 1.0E-170 T 23-04-2016 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 141 1.3E-35 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 PANTHER PTHR32338 1 342 1.0E-170 T 23-04-2016 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 342 7.5E-128 T 23-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 SUPERFAMILY SSF51735 3 175 2.82E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 Gene3D G3DSA:3.40.50.720 1 157 7.6E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 23-04-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 313 6.6E-17 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 336 42.449 T 23-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 SMART SM00859 3 141 2.0E-62 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 THIMO_RS00355 713c1f2229d0d186f7538135247e6f33 342 SUPERFAMILY SSF55347 149 310 2.88E-47 T 23-04-2016 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 180 203 1.1E-72 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 1.1E-72 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 310 335 1.1E-72 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 1.1E-72 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 206 233 1.1E-72 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 149 172 1.1E-72 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 Gene3D G3DSA:3.30.540.10 5 196 4.5E-80 T 23-04-2016 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PANTHER PTHR11556 6 336 2.6E-165 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 SUPERFAMILY SSF56655 2 334 1.07E-116 T 23-04-2016 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PIRSF PIRSF500210 1 337 6.0E-130 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 Gene3D G3DSA:3.40.190.80 197 334 4.3E-54 T 23-04-2016 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 195 1.5E-67 T 23-04-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 PIRSF PIRSF000904 1 337 2.9E-127 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 336 47.021 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 THIMO_RS12570 25fd6fb392763fb2dfbdfbf844a6bf81 338 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 276 288 - T 23-04-2016 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.2090.10 181 275 8.2E-25 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82866 296 498 4.58E-47 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.5E-99 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1021 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 565 665 8.11E-25 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:1.10.3850.10 811 1021 2.7E-52 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:1.10.3850.10 279 499 2.1E-56 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82714 720 802 7.46E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.70.1430 567 666 1.6E-26 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1023 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82714 183 272 5.89E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.70.1430 38 139 3.4E-28 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 38 130 1.43E-22 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PANTHER PTHR32063 1 1022 0.0 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.2090.10 719 802 2.8E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 PANTHER PTHR32063:SF10 1 1022 0.0 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 274 329 1.09E-23 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 135 182 1.09E-23 T 23-04-2016 THIMO_RS14935 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82866 804 1022 3.14E-43 T 23-04-2016 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 Gene3D G3DSA:3.40.50.1980 30 168 1.9E-7 T 23-04-2016 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 TIGRFAM TIGR01279 DPOR_bchN: light-independent protochlorophyllide reductase, N subunit 20 425 5.7E-153 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 PIRSF PIRSF000162 7 426 1.2E-174 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 Gene3D G3DSA:3.40.50.1980 251 374 1.0E-6 T 23-04-2016 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 SUPERFAMILY SSF53807 19 421 5.56E-76 T 23-04-2016 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 Hamap MF_00352 Light-independent protochlorophyllide reductase subunit N [bchN]. 15 425 52.857 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 PANTHER PTHR39429 21 424 7.8E-91 T 23-04-2016 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 PANTHER PTHR39429:SF1 21 424 7.8E-91 T 23-04-2016 THIMO_RS14395 db33fc759ac32ede33c6d925dc254ccb 426 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 35 410 1.5E-31 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS16460 aba42a87cc9a3c43a053dd3ba1934963 101 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 10 96 5.1E-37 T 23-04-2016 IPR014057 Addiction module antidote protein, HI1420 THIMO_RS16460 aba42a87cc9a3c43a053dd3ba1934963 101 PANTHER PTHR40275:SF1 6 101 2.6E-21 T 23-04-2016 THIMO_RS16460 aba42a87cc9a3c43a053dd3ba1934963 101 SUPERFAMILY SSF47413 32 94 1.13E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS16460 aba42a87cc9a3c43a053dd3ba1934963 101 PANTHER PTHR40275 6 101 2.6E-21 T 23-04-2016 THIMO_RS16460 aba42a87cc9a3c43a053dd3ba1934963 101 Pfam PF01381 Helix-turn-helix 52 94 2.2E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS16460 aba42a87cc9a3c43a053dd3ba1934963 101 Gene3D G3DSA:1.10.260.40 44 94 1.7E-8 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS00300 496f54f981912fbd3fec82b6dd531525 105 Pfam PF00182 Chitinase class I 7 65 6.3E-9 T 23-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 THIMO_RS00300 496f54f981912fbd3fec82b6dd531525 105 Gene3D G3DSA:3.30.20.10 10 46 1.2E-7 T 23-04-2016 THIMO_RS00300 496f54f981912fbd3fec82b6dd531525 105 SUPERFAMILY SSF53955 10 104 1.07E-22 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 SUPERFAMILY SSF51905 118 489 3.1E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 401 423 7.2E-39 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 265 7.2E-39 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 372 388 7.2E-39 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 118 137 7.2E-39 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 304 7.2E-39 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.30.390.30 444 570 1.4E-42 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 117 436 6.1E-66 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PIRSF PIRSF000350 58 575 7.7E-94 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.50.50.60 117 260 4.5E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PANTHER PTHR22912 102 567 1.3E-226 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 SUPERFAMILY SSF51230 3 97 3.53E-23 T 23-04-2016 IPR011053 Single hybrid motif THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.50.50.60 367 443 7.0E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 151 161 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PANTHER PTHR22912:SF160 102 567 1.3E-226 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 455 563 8.1E-33 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 451 472 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 516 531 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 250 259 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 538 558 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 165 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 286 311 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 373 387 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 416 423 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 117 139 8.1E-71 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Pfam PF00364 Biotin-requiring enzyme 6 77 4.8E-21 T 23-04-2016 IPR000089 Biotin/lipoyl attachment THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:2.40.50.100 5 81 1.4E-22 T 23-04-2016 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.50.50.60 261 366 9.3E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 117 569 8.7E-152 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 THIMO_RS05165 fc95e5a7dc953a741ea2ed326d70dc50 580 SUPERFAMILY SSF55424 451 573 8.25E-38 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 PANTHER PTHR33909:SF1 1 110 1.4E-29 T 23-04-2016 THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 23 102 1.8E-23 T 23-04-2016 IPR003849 Preprotein translocase YajC THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 22 42 1.7E-11 T 23-04-2016 IPR003849 Preprotein translocase YajC THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 60 78 1.7E-11 T 23-04-2016 IPR003849 Preprotein translocase YajC THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 Pfam PF02699 Preprotein translocase subunit 24 99 2.1E-25 T 23-04-2016 IPR003849 Preprotein translocase YajC THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 SMART SM01323 20 102 1.1E-35 T 23-04-2016 IPR003849 Preprotein translocase YajC THIMO_RS05045 93c1969509d79c30d7438abbda287c7a 110 PANTHER PTHR33909 1 110 1.4E-29 T 23-04-2016 THIMO_RS12910 b595116c2cbe5223ce889e5ca06d463e 110 Pfam PF00355 Rieske [2Fe-2S] domain 6 90 2.8E-17 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS12910 b595116c2cbe5223ce889e5ca06d463e 110 PANTHER PTHR21496 5 97 2.6E-19 T 23-04-2016 THIMO_RS12910 b595116c2cbe5223ce889e5ca06d463e 110 SUPERFAMILY SSF50022 5 103 1.15E-26 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS12910 b595116c2cbe5223ce889e5ca06d463e 110 Gene3D G3DSA:2.102.10.10 3 105 5.2E-30 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 Pfam PF00005 ABC transporter 33 181 4.3E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 SUPERFAMILY SSF52540 14 237 5.19E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 PANTHER PTHR24220 15 233 1.6E-122 T 23-04-2016 THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 SMART SM00382 42 230 2.6E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 PANTHER PTHR24220:SF452 15 233 1.6E-122 T 23-04-2016 THIMO_RS03050 b693d911282b2aca1210c3dcbd8561b3 242 Gene3D G3DSA:3.40.50.300 12 237 1.5E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:3.40.50.300 549 639 7.3E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:3.40.50.300 281 383 7.3E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 PANTHER PTHR11070:SF19 1 662 0.0 T 23-04-2016 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:1.10.10.160 109 182 3.3E-19 T 23-04-2016 IPR013986 DExx box DNA helicase domain THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:1.10.486.10 384 535 2.0E-37 T 23-04-2016 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Pfam PF13361 UvrD-like helicase C-terminal domain 272 612 4.9E-67 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 666 39.108 T 23-04-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:3.40.50.300 183 280 1.8E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:3.40.50.300 2 105 1.8E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 4 665 6.5E-290 T 23-04-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 266 5.3E-72 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 PANTHER PTHR11070 1 662 0.0 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS14965 4f7c22655df0b7664625e415048aee2c 667 SUPERFAMILY SSF52540 2 638 6.46E-164 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 PANTHER PTHR10108:SF705 288 294 1.3E-13 T 23-04-2016 THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 Gene3D G3DSA:2.20.28.30 14 38 2.3E-4 T 23-04-2016 IPR006591 RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 GO:0003677|GO:0003899|GO:0006351 THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 Gene3D G3DSA:3.40.50.150 95 212 2.3E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 PANTHER PTHR10108 288 294 1.3E-13 T 23-04-2016 THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 PANTHER PTHR10108 63 246 1.3E-13 T 23-04-2016 THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 SUPERFAMILY SSF53335 64 226 7.15E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 PANTHER PTHR10108:SF705 63 246 1.3E-13 T 23-04-2016 THIMO_RS16580 1666b75fe69ea7541da61f0cfdfe71e9 297 Pfam PF08241 Methyltransferase domain 116 205 1.7E-14 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 PANTHER PTHR26402 1 209 7.2E-66 T 23-04-2016 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 PANTHER PTHR26402:SF151 1 209 7.2E-66 T 23-04-2016 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 Gene3D G3DSA:1.10.10.10 150 210 1.2E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 9.5E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 9.5E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 9.5E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 Gene3D G3DSA:3.40.50.2300 1 149 8.3E-39 T 23-04-2016 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 SUPERFAMILY SSF46894 144 210 7.82E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 SUPERFAMILY SSF52172 1 123 2.28E-34 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 SMART SM00421 148 205 1.6E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 Pfam PF00072 Response regulator receiver domain 3 113 6.9E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 SMART SM00448 1 113 7.6E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11155 71af633665d0e46c4829185678ee6e05 232 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 5.9E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS05780 b39f6c0d350eaefb5a6fd5c638f83cd0 149 PANTHER PTHR12510 1 112 5.3E-32 T 23-04-2016 THIMO_RS05780 b39f6c0d350eaefb5a6fd5c638f83cd0 149 SUPERFAMILY SSF110857 3 118 9.03E-30 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like THIMO_RS05780 b39f6c0d350eaefb5a6fd5c638f83cd0 149 Gene3D G3DSA:3.10.490.10 2 116 4.5E-34 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like THIMO_RS05780 b39f6c0d350eaefb5a6fd5c638f83cd0 149 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 113 1.6E-23 T 23-04-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like THIMO_RS05780 b39f6c0d350eaefb5a6fd5c638f83cd0 149 PANTHER PTHR12510:SF6 1 112 5.3E-32 T 23-04-2016 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 Pfam PF00591 Glycosyl transferase family, a/b domain 76 325 5.2E-98 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 64 1.8E-19 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 SUPERFAMILY SSF47648 1 69 6.15E-20 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 SUPERFAMILY SSF52418 75 337 2.62E-94 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 PANTHER PTHR11922:SF5 1 337 1.4E-110 T 23-04-2016 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 Gene3D G3DSA:3.40.1030.10 76 337 2.5E-107 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 PANTHER PTHR11922 1 337 1.4E-110 T 23-04-2016 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 335 38.22 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 334 5.2E-125 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 THIMO_RS05625 3bdeddc19865e7cbf394423106d51a8a 340 Gene3D G3DSA:1.20.970.10 4 69 1.4E-27 T 23-04-2016 THIMO_RS08700 d6104b9e3527316375b6fc01ec94990f 230 Pfam PF07238 PilZ domain 9 93 2.9E-8 T 23-04-2016 IPR009875 PilZ domain GO:0035438 THIMO_RS08700 d6104b9e3527316375b6fc01ec94990f 230 Gene3D G3DSA:2.40.10.220 1 98 7.2E-7 T 23-04-2016 THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 TIGRFAM TIGR04335 AmmeMemoSam_A: AmmeMemoRadiSam system protein A 2 174 3.0E-58 T 23-04-2016 IPR027623 AmmeMemoRadiSam system protein A THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 TIGRFAM TIGR00296 TIGR00296: uncharacterized protein, PH0010 family 24 175 6.2E-33 T 23-04-2016 IPR023473 AMMECR1 THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 Pfam PF01871 AMMECR1 28 173 6.4E-42 T 23-04-2016 IPR002733 AMMECR1 domain THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 Gene3D G3DSA:3.30.700.20 3 115 1.1E-32 T 23-04-2016 IPR027485 AMMECR1, N-terminal THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 SUPERFAMILY SSF143447 4 176 1.7E-51 T 23-04-2016 IPR002733 AMMECR1 domain THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 PANTHER PTHR13016 37 170 1.8E-27 T 23-04-2016 IPR023473 AMMECR1 THIMO_RS14515 6dc337a7163414ef700995487e8ca193 190 Gene3D G3DSA:3.30.1490.150 116 170 1.5E-20 T 23-04-2016 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00387 430 543 8.6E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 52 172 1.3E-21 T 23-04-2016 IPR000014 PAS domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:3.30.450.20 59 162 7.4E-27 T 23-04-2016 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SUPERFAMILY SSF55874 392 539 5.63E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00091 177 240 9.0 T 23-04-2016 IPR000014 PAS domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00091 51 117 1.1E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SUPERFAMILY SSF55785 57 163 3.49E-27 T 23-04-2016 IPR000014 PAS domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SUPERFAMILY SSF55785 161 268 1.29E-9 T 23-04-2016 IPR000014 PAS domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 Pfam PF00989 PAS fold 53 162 2.1E-21 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 PANTHER PTHR24423 257 545 4.2E-48 T 23-04-2016 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 PANTHER PTHR24423 51 232 4.2E-48 T 23-04-2016 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 521 4.7E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 499 4.7E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 485 4.7E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 431 539 4.9E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 TIGRFAM TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL 48 537 5.0E-162 T 23-04-2016 IPR014285 Nitrogen fixation negative regulator NifL GO:0004871|GO:0007165|GO:0009399|GO:0050660 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:3.30.450.20 163 269 2.0E-9 T 23-04-2016 THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:3.30.565.10 393 539 3.6E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06085 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00086 123 165 2.9E-6 T 23-04-2016 IPR001610 PAC motif THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.40.50.150 148 220 1.7E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.40.50.150 260 380 1.7E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 510 675 3.5E-17 T 23-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 201 212 - T 23-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 PIRSF PIRSF037618 1 718 6.6E-283 T 23-04-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Pfam PF02926 THUMP domain 39 155 3.2E-12 T 23-04-2016 IPR004114 THUMP domain GO:0003723 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 SMART SM00981 58 156 1.6E-20 T 23-04-2016 IPR004114 THUMP domain GO:0003723 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 PANTHER PTHR18895:SF61 411 717 9.8E-93 T 23-04-2016 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Pfam PF01170 Putative RNA methylase family UPF0020 164 378 1.1E-43 T 23-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 PANTHER PTHR18895 411 717 9.8E-93 T 23-04-2016 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 SUPERFAMILY SSF53335 263 379 3.34E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 SUPERFAMILY SSF53335 143 223 3.34E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 310 316 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 6 718 32.379 T 23-04-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.40.50.150 445 717 4.3E-69 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03415 7df70475c8c9a942603d16e6e184c280 718 SUPERFAMILY SSF53335 408 714 4.11E-61 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 448 8.4E-168 T 23-04-2016 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 Gene3D G3DSA:3.30.390.30 337 447 2.7E-40 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 422 442 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 400 415 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 9.6E-70 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PANTHER PTHR22912 1 451 2.9E-206 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 3.4E-34 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.4E-34 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 3.4E-34 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 3.4E-34 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 3.4E-34 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 2.4E-31 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 SUPERFAMILY SSF51905 1 364 1.68E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 Gene3D G3DSA:3.50.50.60 4 137 2.6E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PIRSF PIRSF000350 1 448 2.2E-73 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 Gene3D G3DSA:3.50.50.60 138 325 4.6E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 PANTHER PTHR22912:SF106 1 451 2.9E-206 T 23-04-2016 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 SUPERFAMILY SSF55424 335 447 5.84E-32 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 THIMO_RS04945 0479ab9ed0fa789728346df645cd6e29 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 2.3E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 PANTHER PTHR24423 285 484 3.4E-34 T 23-04-2016 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 PANTHER PTHR24423:SF549 285 484 3.4E-34 T 23-04-2016 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 PANTHER PTHR24423:SF549 136 269 3.4E-34 T 23-04-2016 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 Gene3D G3DSA:3.30.450.20 3 118 1.8E-15 T 23-04-2016 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 Gene3D G3DSA:3.30.565.10 392 484 1.4E-6 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 Pfam PF08447 PAS fold 162 247 5.2E-16 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 124 1.7E-10 T 23-04-2016 IPR000014 PAS domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 261 5.3E-20 T 23-04-2016 IPR000014 PAS domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 SUPERFAMILY SSF55874 362 483 2.74E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 SMART SM00091 2 67 0.015 T 23-04-2016 IPR000014 PAS domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 SMART SM00091 138 206 8.3E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 SUPERFAMILY SSF55785 3 118 2.26E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 Pfam PF07730 Histidine kinase 289 351 8.6E-5 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 PANTHER PTHR24423 136 269 3.4E-34 T 23-04-2016 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 Gene3D G3DSA:3.30.450.20 135 252 3.3E-29 T 23-04-2016 THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 SUPERFAMILY SSF55785 144 257 1.34E-26 T 23-04-2016 IPR000014 PAS domain THIMO_RS12410 5eb6f826feba71fd1e0a8aad67a54b98 489 Pfam PF08448 PAS fold 8 122 1.1E-8 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS15660 ab303f558e3e227d653f5ac436b750ea 176 SMART SM00987 9 167 6.9E-9 T 23-04-2016 THIMO_RS15660 ab303f558e3e227d653f5ac436b750ea 176 Gene3D G3DSA:3.40.470.10 8 166 2.6E-32 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS15660 ab303f558e3e227d653f5ac436b750ea 176 SUPERFAMILY SSF52141 8 167 1.57E-32 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS15660 ab303f558e3e227d653f5ac436b750ea 176 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 8 163 8.6E-47 T 23-04-2016 IPR026353 Hypoxanthine-DNA glycosylase THIMO_RS15660 ab303f558e3e227d653f5ac436b750ea 176 Pfam PF03167 Uracil DNA glycosylase superfamily 14 164 5.2E-8 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS15660 ab303f558e3e227d653f5ac436b750ea 176 SMART SM00986 9 167 6.9E-9 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS04895 4135c4a80153417efd8dcf0efc4de115 229 PANTHER PTHR11203:SF11 1 227 6.7E-41 T 23-04-2016 THIMO_RS04895 4135c4a80153417efd8dcf0efc4de115 229 SUPERFAMILY SSF56281 3 227 2.3E-45 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS04895 4135c4a80153417efd8dcf0efc4de115 229 PANTHER PTHR11203 1 227 6.7E-41 T 23-04-2016 THIMO_RS04895 4135c4a80153417efd8dcf0efc4de115 229 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 185 227 4.2E-9 T 23-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain THIMO_RS04895 4135c4a80153417efd8dcf0efc4de115 229 SMART SM01027 25 168 4.3E-51 T 23-04-2016 IPR022712 Beta-Casp domain THIMO_RS04895 4135c4a80153417efd8dcf0efc4de115 229 Pfam PF10996 Beta-Casp domain 25 168 1.5E-25 T 23-04-2016 IPR022712 Beta-Casp domain THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 48 126 2.7E-9 T 23-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 185 491 2.6E-51 T 23-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 PANTHER PTHR30600:SF4 274 491 9.3E-56 T 23-04-2016 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 PANTHER PTHR30600:SF4 57 125 9.3E-56 T 23-04-2016 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 PANTHER PTHR30600:SF4 205 248 9.3E-56 T 23-04-2016 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 SUPERFAMILY SSF46626 357 491 4.16E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 PANTHER PTHR30600 274 491 9.3E-56 T 23-04-2016 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 PANTHER PTHR30600 57 125 9.3E-56 T 23-04-2016 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 PANTHER PTHR30600 205 248 9.3E-56 T 23-04-2016 THIMO_RS03170 9c7ee9d0e8388940f198731af042ed56 491 Gene3D G3DSA:1.10.760.10 359 491 3.9E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 SUPERFAMILY SSF53244 354 508 3.01E-47 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 PANTHER PTHR23135:SF4 18 510 1.1E-177 T 23-04-2016 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 29 506 5.1E-145 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Pfam PF08245 Mur ligase middle domain 126 333 2.0E-44 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Gene3D G3DSA:3.90.190.20 358 499 5.9E-53 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 SUPERFAMILY SSF63418 11 116 1.57E-14 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Pfam PF02875 Mur ligase family, glutamate ligase domain 354 438 2.3E-23 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Gene3D G3DSA:3.40.1190.10 117 357 1.5E-77 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Gene3D G3DSA:3.40.1390.10 25 115 2.0E-17 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 11 506 32.472 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 PANTHER PTHR23135 18 510 1.1E-177 T 23-04-2016 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 Pfam PF01225 Mur ligase family, catalytic domain 31 101 3.7E-8 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14805 468daf0a422dcb3da18c73c1973a312e 513 SUPERFAMILY SSF53623 117 353 5.36E-69 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS12175 a8a26be31cab0e33ee524f1c474b59fd 109 Pfam PF03658 RnfH family Ubiquitin 6 88 8.6E-34 T 23-04-2016 IPR005346 RnfH protein THIMO_RS12175 a8a26be31cab0e33ee524f1c474b59fd 109 PANTHER PTHR37483 3 108 1.5E-34 T 23-04-2016 THIMO_RS12175 a8a26be31cab0e33ee524f1c474b59fd 109 SUPERFAMILY SSF54285 5 80 1.44E-23 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp THIMO_RS12175 a8a26be31cab0e33ee524f1c474b59fd 109 Gene3D G3DSA:3.10.20.280 2 90 1.2E-34 T 23-04-2016 IPR005346 RnfH protein THIMO_RS12175 a8a26be31cab0e33ee524f1c474b59fd 109 PANTHER PTHR37483:SF1 3 108 1.5E-34 T 23-04-2016 THIMO_RS12175 a8a26be31cab0e33ee524f1c474b59fd 109 Hamap MF_00460 Protein RnfH [rnfH]. 6 96 24.372 T 23-04-2016 IPR005346 RnfH protein THIMO_RS09955 3177ce113d19bacb334636cb77f9c6fe 84 Pfam PF01909 Nucleotidyltransferase domain 21 69 2.2E-4 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS09955 3177ce113d19bacb334636cb77f9c6fe 84 SUPERFAMILY SSF81301 19 72 7.85E-8 T 23-04-2016 THIMO_RS09955 3177ce113d19bacb334636cb77f9c6fe 84 Gene3D G3DSA:3.30.460.10 9 81 5.3E-11 T 23-04-2016 THIMO_RS12235 2140dca5559d64e7f4a4715e4ac192f7 164 SUPERFAMILY SSF53271 6 133 2.23E-32 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS12235 2140dca5559d64e7f4a4715e4ac192f7 164 PANTHER PTHR11608 11 158 2.6E-48 T 23-04-2016 THIMO_RS12235 2140dca5559d64e7f4a4715e4ac192f7 164 Gene3D G3DSA:3.40.50.2020 4 137 1.4E-33 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS12235 2140dca5559d64e7f4a4715e4ac192f7 164 Pfam PF00156 Phosphoribosyl transferase domain 7 123 1.0E-14 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 47 1.4E-20 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 SUPERFAMILY SSF55658 1 57 1.6E-17 T 23-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.728 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 1.1E-25 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 Gene3D G3DSA:3.40.5.10 1 52 2.3E-23 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 SUPERFAMILY SSF55653 61 148 3.27E-25 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 Gene3D G3DSA:3.10.430.100 61 148 3.2E-28 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 148 9.3E-46 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07235 6432177f6e5e71ce7d798694985496f5 149 PANTHER PTHR21368 1 148 6.1E-53 T 23-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 Pfam PF00318 Ribosomal protein S2 9 224 1.7E-95 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 Gene3D G3DSA:1.10.287.610 100 152 7.2E-26 T 23-04-2016 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 SUPERFAMILY SSF52313 6 227 2.09E-94 T 23-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PANTHER PTHR12534 4 225 7.8E-113 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 Gene3D G3DSA:3.40.50.10490 23 99 2.5E-62 T 23-04-2016 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 Gene3D G3DSA:3.40.50.10490 158 228 2.5E-62 T 23-04-2016 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 4.7E-104 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 42.066 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.6E-37 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.6E-37 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.6E-37 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.6E-37 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.6E-37 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03445 65938117145e4bff6b7d6af9a57cf220 249 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.6E-37 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS09135 ed609f91952bfa0b0697bc88a5961b3a 82 Gene3D G3DSA:1.10.260.40 1 79 6.8E-26 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS09135 ed609f91952bfa0b0697bc88a5961b3a 82 SUPERFAMILY SSF47413 6 80 8.84E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS09135 ed609f91952bfa0b0697bc88a5961b3a 82 PANTHER PTHR36924 1 78 1.1E-16 T 23-04-2016 THIMO_RS09135 ed609f91952bfa0b0697bc88a5961b3a 82 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 1 79 5.6E-24 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 THIMO_RS17050 3c66f5c802f86841e48a740a177407f6 171 Pfam PF00583 Acetyltransferase (GNAT) family 89 148 3.1E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS17050 3c66f5c802f86841e48a740a177407f6 171 Gene3D G3DSA:3.40.630.30 8 150 6.6E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS17050 3c66f5c802f86841e48a740a177407f6 171 SUPERFAMILY SSF55729 14 151 3.43E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS14475 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF53738 183 292 1.26E-25 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 107 116 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 295 408 1.7E-31 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 PANTHER PTHR22573:SF2 5 541 3.7E-256 T 23-04-2016 THIMO_RS14475 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF55957 410 544 6.28E-45 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF53738 4 199 6.28E-45 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.40.120.10 284 402 2.2E-45 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.30.310.50 403 544 5.5E-58 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 PANTHER PTHR22573 5 541 3.7E-256 T 23-04-2016 THIMO_RS14475 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF53738 279 415 2.08E-37 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 153 1.1E-33 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 206 225 2.5E-20 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 106 120 2.5E-20 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 242 255 2.5E-20 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 271 286 2.5E-20 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.40.120.10 7 195 6.2E-60 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.40.120.10 196 283 9.8E-33 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS14475 91165adad970775971f31658404cce70 544 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 184 287 1.7E-12 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 SUPERFAMILY SSF55781 120 389 8.44E-64 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 PANTHER PTHR34824 39 387 2.4E-111 T 23-04-2016 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 SUPERFAMILY SSF46785 51 131 1.82E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 52 386 1.6E-99 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 PIRSF PIRSF005485 49 390 2.3E-106 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 Gene3D G3DSA:1.10.10.10 45 131 1.8E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 54 121 1.9E-6 T 23-04-2016 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 50 380 28.821 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 Pfam PF01628 HrcA protein C terminal domain 154 373 4.6E-60 T 23-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 THIMO_RS12150 b2b6e3d9c7314229c96b43b64fdddbb6 390 Gene3D G3DSA:3.30.450.40 226 389 2.7E-43 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS11835 256c09a374c7f2da2dce4f5850dad707 372 Pfam PF01594 Domain of unknown function DUF20 24 351 1.0E-28 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS11835 256c09a374c7f2da2dce4f5850dad707 372 PANTHER PTHR21716 22 369 8.0E-68 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS11835 256c09a374c7f2da2dce4f5850dad707 372 PANTHER PTHR21716:SF20 22 369 8.0E-68 T 23-04-2016 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 Pfam PF00589 Phage integrase family 2 138 7.6E-23 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 PANTHER PTHR30349 1 14 1.3E-39 T 23-04-2016 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 PANTHER PTHR30349 32 168 1.3E-39 T 23-04-2016 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 PANTHER PTHR30349:SF28 1 14 1.3E-39 T 23-04-2016 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 Gene3D G3DSA:1.10.443.10 5 140 1.9E-25 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 PANTHER PTHR30349:SF28 32 168 1.3E-39 T 23-04-2016 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 SUPERFAMILY SSF56349 3 15 7.65E-23 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS18375 6eb315f2915fcd7a3394722da369c2f2 195 SUPERFAMILY SSF56349 53 145 7.65E-23 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS03835 f1799751b98d5449c68f74531c569ed0 282 SUPERFAMILY SSF143422 3 126 3.92E-28 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS03835 f1799751b98d5449c68f74531c569ed0 282 Gene3D G3DSA:3.30.70.1290 13 126 3.4E-15 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS03835 f1799751b98d5449c68f74531c569ed0 282 Pfam PF01797 Transposase IS200 like 13 120 2.2E-15 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS03835 f1799751b98d5449c68f74531c569ed0 282 PANTHER PTHR34322:SF1 2 210 1.3E-36 T 23-04-2016 THIMO_RS03835 f1799751b98d5449c68f74531c569ed0 282 SMART SM01321 9 123 4.6E-42 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS03835 f1799751b98d5449c68f74531c569ed0 282 PANTHER PTHR34322 2 210 1.3E-36 T 23-04-2016 THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 Gene3D G3DSA:3.30.70.270 301 426 2.2E-39 T 23-04-2016 THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 SMART SM00267 288 426 1.4E-31 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 295 425 2.0E-34 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 Pfam PF00990 Diguanylate cyclase, GGDEF domain 299 425 2.4E-33 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 Gene3D G3DSA:3.30.450.20 147 255 4.4E-24 T 23-04-2016 THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 PANTHER PTHR10799:SF750 179 426 3.7E-21 T 23-04-2016 THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 Gene3D G3DSA:3.30.450.20 7 138 7.0E-43 T 23-04-2016 THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 SUPERFAMILY SSF103190 148 253 9.42E-21 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 PANTHER PTHR10799 179 426 3.7E-21 T 23-04-2016 THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 SUPERFAMILY SSF103190 2 138 4.19E-43 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS05885 0a589891c588a8562bacc8697a4abfc1 426 SUPERFAMILY SSF55073 304 425 1.1E-34 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 138 158 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 Pfam PF04055 Radical SAM superfamily 139 307 1.7E-21 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 5 410 2.3E-115 T 23-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 Gene3D G3DSA:3.80.30.20 134 357 8.3E-63 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 PANTHER PTHR11918:SF45 1 417 1.6E-106 T 23-04-2016 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 PANTHER PTHR11918 1 417 1.6E-106 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 SUPERFAMILY SSF102114 130 351 4.19E-52 T 23-04-2016 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 SMART SM00729 134 349 2.7E-50 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 Pfam PF00919 Uncharacterized protein family UPF0004 2 97 1.8E-22 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 THIMO_RS16380 eb7b40505cbd62dae65cb709889f508e 428 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 2 414 1.4E-107 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 SUPERFAMILY SSF56059 82 347 8.13E-69 T 23-04-2016 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 1.1E-43 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 Gene3D G3DSA:3.30.470.20 204 447 5.2E-95 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 321 2.0E-77 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 SUPERFAMILY SSF51246 330 446 2.67E-41 T 23-04-2016 IPR011054 Rudiment single hybrid motif THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 7.6E-38 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 Gene3D G3DSA:3.40.50.20 1 128 1.2E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 SMART SM00878 335 441 2.3E-55 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 Gene3D G3DSA:3.30.1490.20 129 200 3.8E-27 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 PANTHER PTHR18866 1 473 6.4E-287 T 23-04-2016 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 SUPERFAMILY SSF52440 1 112 4.89E-46 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS09415 77efcf65eaa693a5c7184dc1f7a2957e 473 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 2.7E-84 T 23-04-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 Gene3D G3DSA:3.40.50.20 8 102 9.9E-19 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 SUPERFAMILY SSF56059 98 288 3.03E-48 T 23-04-2016 THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.197 T 23-04-2016 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 Pfam PF08443 RimK-like ATP-grasp domain 98 285 2.6E-67 T 23-04-2016 IPR013651 ATP-grasp fold, RimK-type THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 Gene3D G3DSA:3.30.470.20 175 276 3.0E-34 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 PANTHER PTHR21621 1 288 3.1E-125 T 23-04-2016 THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 Gene3D G3DSA:3.30.1490.20 103 174 2.1E-5 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS01780 f33c3845b584569256b20277fb6f9920 301 PANTHER PTHR21621:SF0 1 288 3.1E-125 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 SUPERFAMILY SSF48168 138 355 1.24E-58 T 23-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PRINTS PR01183 Ribonucleotide reductase large chain signature 642 664 6.5E-44 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PRINTS PR01183 Ribonucleotide reductase large chain signature 746 773 6.5E-44 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PRINTS PR01183 Ribonucleotide reductase large chain signature 567 578 6.5E-44 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PRINTS PR01183 Ribonucleotide reductase large chain signature 670 693 6.5E-44 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PRINTS PR01183 Ribonucleotide reductase large chain signature 604 627 6.5E-44 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PRINTS PR01183 Ribonucleotide reductase large chain signature 432 451 6.5E-44 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Pfam PF03477 ATP cone domain 18 114 5.1E-17 T 23-04-2016 IPR005144 ATP-cone domain THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Pfam PF02867 Ribonucleotide reductase, barrel domain 357 891 3.5E-179 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 279 351 4.1E-23 T 23-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 PANTHER PTHR11573 134 913 0.0 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 735 757 - T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 282 894 1.5E-212 T 23-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 SUPERFAMILY SSF51998 826 894 2.9E-180 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 SUPERFAMILY SSF51998 356 795 2.9E-180 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Gene3D G3DSA:3.20.70.20 274 478 4.7E-84 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Gene3D G3DSA:3.20.70.20 533 690 4.7E-84 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Gene3D G3DSA:3.20.70.20 746 791 4.7E-84 T 23-04-2016 THIMO_RS05800 b016003bf3dd8719839bafb003821cb8 955 Gene3D G3DSA:3.20.70.20 852 893 4.7E-84 T 23-04-2016 THIMO_RS08675 22b774ff9b243b9fd6fdf20828e41d23 317 PANTHER PTHR34184 1 317 1.5E-149 T 23-04-2016 THIMO_RS08675 22b774ff9b243b9fd6fdf20828e41d23 317 PANTHER PTHR34184:SF2 1 317 1.5E-149 T 23-04-2016 THIMO_RS08675 22b774ff9b243b9fd6fdf20828e41d23 317 Pfam PF03773 Predicted permease 22 311 4.1E-64 T 23-04-2016 IPR005524 Predicted permease DUF318 THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 125 1.7E-36 T 23-04-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 SUPERFAMILY SSF53092 3 173 4.97E-48 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 Gene3D G3DSA:3.40.350.10 3 177 7.8E-50 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 Gene3D G3DSA:3.90.230.10 178 435 5.0E-86 T 23-04-2016 IPR000994 Peptidase M24, structural domain THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 SMART SM01011 1 135 9.0E-60 T 23-04-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 SUPERFAMILY SSF55920 174 435 3.53E-84 T 23-04-2016 IPR000994 Peptidase M24, structural domain THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 PANTHER PTHR10804 1 436 7.5E-153 T 23-04-2016 THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 350 362 - T 23-04-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 Pfam PF00557 Metallopeptidase family M24 180 415 1.5E-67 T 23-04-2016 IPR000994 Peptidase M24, structural domain THIMO_RS05710 bc5067d5640c458d8e45f552e8404940 440 PANTHER PTHR10804:SF17 1 436 7.5E-153 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 Pfam PF00873 AcrB/AcrD/AcrF family 5 1030 7.1E-166 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.70.1430 46 130 8.3E-18 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82866 293 491 5.62E-39 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:1.10.3850.10 816 1032 1.3E-49 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82693 47 131 2.46E-16 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:1.20.1640.10 288 494 1.5E-48 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82714 182 261 6.02E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.2E-28 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.2E-28 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.2E-28 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 1.2E-28 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 1.2E-28 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.2E-28 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82866 810 1037 1.44E-41 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82714 725 806 6.15E-7 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.2090.10 724 805 3.3E-5 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.2090.10 182 261 1.8E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 PANTHER PTHR32063 1 1040 6.0E-225 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82693 136 181 1.53E-10 T 23-04-2016 THIMO_RS07645 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82693 269 326 1.53E-10 T 23-04-2016 THIMO_RS02925 a621f5b541cf4ead061a24c08c157087 187 SUPERFAMILY SSF52980 5 178 1.34E-24 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS02925 a621f5b541cf4ead061a24c08c157087 187 Pfam PF05685 Putative restriction endonuclease 11 175 6.3E-15 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS02925 a621f5b541cf4ead061a24c08c157087 187 Gene3D G3DSA:3.90.1570.10 8 178 1.9E-23 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS02925 a621f5b541cf4ead061a24c08c157087 187 PANTHER PTHR34107 8 180 3.0E-14 T 23-04-2016 THIMO_RS03525 0eb9cbc49c57d0426221dedb409e15bc 285 PANTHER PTHR13622 88 285 7.2E-69 T 23-04-2016 THIMO_RS03525 0eb9cbc49c57d0426221dedb409e15bc 285 SUPERFAMILY SSF55811 96 262 2.03E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS03525 0eb9cbc49c57d0426221dedb409e15bc 285 PANTHER PTHR13622:SF8 88 285 7.2E-69 T 23-04-2016 THIMO_RS03525 0eb9cbc49c57d0426221dedb409e15bc 285 Gene3D G3DSA:3.90.79.10 87 264 3.3E-49 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS03525 0eb9cbc49c57d0426221dedb409e15bc 285 Pfam PF15916 Domain of unknown function (DUF4743) 3 117 2.2E-16 T 23-04-2016 IPR031804 Domain of unknown function DUF4743 THIMO_RS03525 0eb9cbc49c57d0426221dedb409e15bc 285 Pfam PF00293 NUDIX domain 131 243 1.8E-6 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 386 6.2E-183 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 PANTHER PTHR11964 1 382 1.2E-262 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 237 376 7.6E-68 T 23-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 SUPERFAMILY SSF55973 4 113 3.41E-43 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 PIRSF PIRSF000497 1 388 4.2E-171 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 SUPERFAMILY SSF55973 237 388 1.1E-68 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Gene3D G3DSA:3.30.300.10 12 139 6.5E-46 T 23-04-2016 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Gene3D G3DSA:3.30.300.10 248 387 1.6E-69 T 23-04-2016 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Pfam PF02772 S-adenosylmethionine synthetase, central domain 118 235 6.7E-44 T 23-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 263 271 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 120 130 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Gene3D G3DSA:3.30.300.10 140 237 2.3E-41 T 23-04-2016 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 105 7.5E-41 T 23-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 387 56.041 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS10440 324ca8fb61d601c9aeb33d8255493506 389 SUPERFAMILY SSF55973 117 236 1.69E-50 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 SUPERFAMILY SSF55931 4 296 5.3E-118 T 23-04-2016 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 Pfam PF02934 GatB/GatE catalytic domain 5 288 1.6E-110 T 23-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 SUPERFAMILY SSF89095 297 402 2.62E-36 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 PANTHER PTHR11659 3 475 1.5E-254 T 23-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 2 475 1.6E-171 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 144 158 - T 23-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 PANTHER PTHR11659:SF0 3 475 1.5E-254 T 23-04-2016 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 476 38.892 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 Gene3D G3DSA:1.10.10.410 422 476 3.6E-5 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 Pfam PF02637 GatB domain 328 475 2.6E-55 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 THIMO_RS13275 52f133cf891df3e2ce60aa5b5d91d262 477 SMART SM00845 328 475 1.1E-85 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 554 654 9.42E-16 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:1.10.3850.10 799 1014 1.6E-62 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:1.10.3850.10 274 490 2.7E-57 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.70.1430 556 652 1.9E-10 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PANTHER PTHR32063 1 1030 0.0 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.2090.10 705 793 3.6E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.2090.10 182 266 1.0E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 137 181 6.02E-24 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 268 324 6.02E-24 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 40 134 5.75E-25 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82714 706 791 1.2E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82866 791 1014 2.49E-50 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 612 626 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 2.8E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.70.1430 40 141 1.5E-29 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 Pfam PF00873 AcrB/AcrD/AcrF family 4 1011 4.4E-299 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82714 183 266 1.44E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 PANTHER PTHR32063:SF14 1 1030 0.0 T 23-04-2016 THIMO_RS09235 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82866 291 488 1.7E-46 T 23-04-2016 THIMO_RS06125 89bd07bc34518b853875c214cdfc6b96 329 PANTHER PTHR34580 1 328 1.8E-65 T 23-04-2016 THIMO_RS06125 89bd07bc34518b853875c214cdfc6b96 329 Pfam PF08279 HTH domain 6 60 2.5E-7 T 23-04-2016 IPR013196 Helix-turn-helix, type 11 THIMO_RS06125 89bd07bc34518b853875c214cdfc6b96 329 Pfam PF13280 WYL domain 144 319 1.3E-38 T 23-04-2016 IPR026881 WYL domain THIMO_RS06125 89bd07bc34518b853875c214cdfc6b96 329 Gene3D G3DSA:1.10.10.10 1 63 4.7E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06125 89bd07bc34518b853875c214cdfc6b96 329 PANTHER PTHR34580:SF3 1 328 1.8E-65 T 23-04-2016 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SMART SM01096 424 547 7.2E-65 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PANTHER PTHR11405 1 1068 0.0 T 23-04-2016 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF52440 1 127 3.17E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 1.6E-35 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 2.1E-70 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.40.50.1380 937 1067 3.9E-41 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SMART SM00851 955 1041 3.0E-30 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:1.10.1030.10 401 538 5.1E-46 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 7.8E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 428 547 1.1E-36 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.602 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF48108 396 554 7.85E-47 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF56059 673 932 1.08E-104 T 23-04-2016 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.40.50.20 3 108 3.8E-43 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF52440 557 675 1.05E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF56059 128 401 2.12E-107 T 23-04-2016 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.40.50.20 539 662 2.7E-60 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 PANTHER PTHR11405:SF5 1 1068 0.0 T 23-04-2016 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF52335 935 1067 1.7E-36 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.30.1490.20 687 744 2.2E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02142 MGS-like domain 956 1041 1.3E-18 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.204 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.30.470.20 200 400 2.7E-74 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.30.470.20 745 934 4.2E-81 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.30.1490.20 142 199 3.5E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS01430 4c07bedc1c647ce63128d0eae61f4f64 1068 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1052 0.0 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 SMART SM01091 201 279 3.7E-31 T 23-04-2016 IPR005170 Transporter-associated domain THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 Pfam PF03471 Transporter associated domain 203 277 8.6E-22 T 23-04-2016 IPR005170 Transporter-associated domain THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 SMART SM00116 74 123 1.1E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 SMART SM00116 137 185 3.1 T 23-04-2016 IPR000644 CBS domain THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 Pfam PF00571 CBS domain 65 121 8.4E-9 T 23-04-2016 IPR000644 CBS domain THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 Pfam PF00571 CBS domain 139 185 9.7E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 Gene3D G3DSA:3.30.465.10 193 278 1.3E-28 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 PANTHER PTHR22777:SF17 18 288 4.8E-107 T 23-04-2016 THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 SUPERFAMILY SSF54631 62 199 9.73E-33 T 23-04-2016 THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 PANTHER PTHR22777 18 288 4.8E-107 T 23-04-2016 THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 Gene3D G3DSA:3.10.580.10 53 192 1.3E-21 T 23-04-2016 THIMO_RS03195 0d0df9d63c8c1b275b9471eb19c1a640 295 SUPERFAMILY SSF56176 200 281 4.64E-23 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS05180 871f7b5d526e77e68f0ad72ec9466f12 137 Pfam PF03466 LysR substrate binding domain 1 121 5.3E-11 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS05180 871f7b5d526e77e68f0ad72ec9466f12 137 SUPERFAMILY SSF53850 1 122 7.24E-12 T 23-04-2016 THIMO_RS05180 871f7b5d526e77e68f0ad72ec9466f12 137 Gene3D G3DSA:3.40.190.10 1 92 7.7E-14 T 23-04-2016 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 Gene3D G3DSA:3.40.50.300 346 574 3.9E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 SUPERFAMILY SSF52540 341 581 5.94E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 PANTHER PTHR24221:SF261 12 588 3.5E-186 T 23-04-2016 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 23 553 6.1E-199 T 23-04-2016 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 Pfam PF00005 ABC transporter 362 511 1.3E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 PANTHER PTHR24221 12 588 3.5E-186 T 23-04-2016 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 Gene3D G3DSA:1.20.1560.10 20 329 2.0E-47 T 23-04-2016 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 SUPERFAMILY SSF90123 19 332 3.66E-53 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 SMART SM00382 371 557 1.1E-21 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 Pfam PF00664 ABC transporter transmembrane region 28 289 4.8E-29 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS01730 203a8d59a7383a922f94f3e2b229074f 588 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 872 979 5.23E-28 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 615 738 2.2E-17 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 73 195 2.6E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 337 467 1.2E-10 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 792 864 2.1E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 871 988 5.5E-19 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00267 981 1153 1.4E-54 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.70.270 993 1159 5.9E-50 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF08447 PAS fold 766 853 2.3E-14 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF08447 PAS fold 362 451 3.3E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF00563 EAL domain 1171 1404 1.8E-71 T 23-04-2016 IPR001633 EAL domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55781 455 599 2.81E-7 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.40 549 606 1.6E-4 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 728 857 2.79E-19 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF00990 Diguanylate cyclase, GGDEF domain 992 1146 4.1E-43 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.20.20.450 1166 1413 1.4E-96 T 23-04-2016 IPR001633 EAL domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 606 729 4.03E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF13426 PAS domain 878 979 8.9E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF13426 PAS domain 88 187 5.5E-4 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF13426 PAS domain 629 730 1.9E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 876 979 2.6E-27 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF141868 1169 1416 3.14E-87 T 23-04-2016 IPR001633 EAL domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 988 1149 6.6E-37 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55073 997 1154 6.98E-42 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 61 184 5.76E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 344 464 2.09E-20 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 817 859 2.0E-5 T 23-04-2016 IPR001610 PAC motif THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 939 981 1.1E-5 T 23-04-2016 IPR001610 PAC motif THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 419 461 0.018 T 23-04-2016 IPR001610 PAC motif THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 690 731 0.0084 T 23-04-2016 IPR001610 PAC motif THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 330 459 4.5E-23 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 618 684 2.1E-5 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 74 140 0.0081 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 867 934 1.3E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 339 407 2.1E-5 T 23-04-2016 IPR000014 PAS domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 726 869 1.4E-27 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 607 725 7.9E-20 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 69 183 3.5E-10 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 PANTHER PTHR10799 880 1263 3.8E-80 T 23-04-2016 THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00052 1163 1409 9.8E-114 T 23-04-2016 IPR001633 EAL domain THIMO_RS18410 275964003fe499c939ffe17b2ed00d84 1429 PANTHER PTHR10799:SF774 880 1263 3.8E-80 T 23-04-2016 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Gene3D G3DSA:3.40.50.10490 452 610 3.2E-66 T 23-04-2016 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 5.4E-258 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 SUPERFAMILY SSF56235 2 234 3.0E-71 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Pfam PF01380 SIS domain 296 419 2.2E-30 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Pfam PF01380 SIS domain 464 592 1.2E-23 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 SUPERFAMILY SSF53697 246 610 8.81E-114 T 23-04-2016 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 PANTHER PTHR10937 1 610 0.0 T 23-04-2016 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Gene3D G3DSA:3.40.50.10490 245 451 1.1E-65 T 23-04-2016 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.754 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Pfam PF13522 Glutamine amidotransferase domain 64 185 5.5E-21 T 23-04-2016 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 PANTHER PTHR10937:SF0 1 610 0.0 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 THIMO_RS05615 e315ce2f614a56dfcced54831c599c71 610 Gene3D G3DSA:3.60.20.10 2 237 1.4E-74 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 Gene3D G3DSA:1.10.60.30 104 170 3.8E-22 T 23-04-2016 IPR023153 PSPTO4464-like domain THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 PANTHER PTHR38101:SF1 18 170 9.2E-30 T 23-04-2016 THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 Pfam PF04751 Protein of unknown function (DUF615) 16 166 5.8E-41 T 23-04-2016 IPR006839 Ribosome-associated, YjgA THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 PIRSF PIRSF016183 2 172 2.0E-40 T 23-04-2016 IPR006839 Ribosome-associated, YjgA THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 PANTHER PTHR38101 18 170 9.2E-30 T 23-04-2016 THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 SUPERFAMILY SSF158710 28 168 3.66E-34 T 23-04-2016 THIMO_RS02190 6464632cac301210cac7615e8467ac9c 172 Gene3D G3DSA:1.10.60.30 28 94 3.2E-13 T 23-04-2016 IPR023153 PSPTO4464-like domain THIMO_RS13285 2a4d53baa2f163d3b7136604033ab934 208 SUPERFAMILY SSF111126 81 207 1.1E-26 T 23-04-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain THIMO_RS13285 2a4d53baa2f163d3b7136604033ab934 208 Pfam PF02830 V4R domain 147 206 1.6E-17 T 23-04-2016 IPR004096 4-vinyl reductase, 4VR THIMO_RS13285 2a4d53baa2f163d3b7136604033ab934 208 Gene3D G3DSA:3.30.1380.20 60 207 1.3E-22 T 23-04-2016 THIMO_RS13285 2a4d53baa2f163d3b7136604033ab934 208 TIGRFAM TIGR02019 BchJ: bacteriochlorophyll 4-vinyl reductase 18 205 4.2E-56 T 23-04-2016 IPR010249 Bacteriochlorophyll 4-vinyl reductase GO:0015979|GO:0030494 UniPathway: UPA00671 THIMO_RS13285 2a4d53baa2f163d3b7136604033ab934 208 SMART SM00989 146 207 6.0E-19 T 23-04-2016 IPR004096 4-vinyl reductase, 4VR THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 SUPERFAMILY SSF102114 33 107 2.88E-13 T 23-04-2016 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 PIRSF PIRSF000370 6 217 1.1E-65 T 23-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 8 214 35.646 T 23-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 Pfam PF04055 Radical SAM superfamily 31 108 1.2E-11 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 Gene3D G3DSA:3.20.20.70 34 106 2.4E-13 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 8 217 9.7E-106 T 23-04-2016 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 Pfam PF13394 4Fe-4S single cluster domain 30 109 5.2E-9 T 23-04-2016 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 PANTHER PTHR11228:SF6 3 213 5.2E-52 T 23-04-2016 THIMO_RS02750 c3442b93a3900deaaa4d13585abe190b 217 PANTHER PTHR11228 3 213 5.2E-52 T 23-04-2016 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 SUPERFAMILY SSF158472 224 271 2.22E-6 T 23-04-2016 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 SUPERFAMILY SSF47384 262 340 3.53E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 Pfam PF00672 HAMP domain 206 272 2.7E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 497 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 453 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 478 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 439 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 499 3.9E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 SUPERFAMILY SSF55874 330 498 2.36E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 SMART SM00388 277 341 1.2E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 SMART SM00387 388 500 1.3E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 SMART SM00304 224 276 4.3E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 PANTHER PTHR24423 144 498 6.4E-108 T 23-04-2016 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 Gene3D G3DSA:1.10.287.130 269 336 5.1E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 PANTHER PTHR24423:SF531 144 498 6.4E-108 T 23-04-2016 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 Pfam PF00512 His Kinase A (phospho-acceptor) domain 277 339 4.7E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16295 cabf5ffd7ad708d0730ca4ada2b140ec 500 Gene3D G3DSA:3.30.565.10 344 499 4.0E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 44 117 1.9E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 PANTHER PTHR33751 20 221 1.1E-49 T 23-04-2016 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 PANTHER PTHR33751:SF3 20 221 1.1E-49 T 23-04-2016 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 Gene3D G3DSA:1.10.760.10 51 121 3.3E-24 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 Gene3D G3DSA:1.10.760.10 133 220 2.5E-23 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 SUPERFAMILY SSF46626 54 122 5.29E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 PIRSF PIRSF000005 17 221 1.7E-58 T 23-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 Pfam PF00034 Cytochrome c 135 220 1.7E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13380 cc183a20711337669174374d0c6d3c99 221 SUPERFAMILY SSF46626 130 219 3.73E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 SMART SM00823 Phosphopantetheine attachment site 5 77 0.0036 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 PANTHER PTHR20863 4 76 3.3E-32 T 23-04-2016 THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.891 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.0E-17 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 SUPERFAMILY SSF47336 2 77 1.57E-24 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 0.001 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 Gene3D G3DSA:1.10.1200.10 3 77 4.4E-36 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS11375 288eca31aab4af5de0f2303f28ea67b4 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 75 7.2E-36 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 Gene3D G3DSA:3.10.580.10 49 188 1.4E-26 T 23-04-2016 THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 PANTHER PTHR11911 133 194 6.2E-22 T 23-04-2016 THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 PANTHER PTHR11911 26 111 6.2E-22 T 23-04-2016 THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 Pfam PF00571 CBS domain 52 106 1.8E-12 T 23-04-2016 IPR000644 CBS domain THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 Pfam PF00571 CBS domain 134 187 1.5E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 SUPERFAMILY SSF54631 40 189 6.35E-28 T 23-04-2016 THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 SMART SM00116 141 189 0.17 T 23-04-2016 IPR000644 CBS domain THIMO_RS16020 c7beed5ebe5adf154730ee746a190b04 194 SMART SM00116 59 107 2.2E-9 T 23-04-2016 IPR000644 CBS domain THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 SUPERFAMILY SSF48239 1371 1625 6.73E-47 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 SUPERFAMILY SSF57414 47 87 4.9E-7 T 23-04-2016 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Gene3D G3DSA:3.50.4.10 41 101 4.2E-11 T 23-04-2016 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 961 1104 1.7E-15 T 23-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Gene3D G3DSA:1.25.40.10 156 263 1.5E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 SMART SM01359 960 1104 3.3E-41 T 23-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 PANTHER PTHR40094 154 1836 1.3E-45 T 23-04-2016 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 SMART SM01360 1165 1254 2.1E-24 T 23-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 PIRSF PIRSF038980 49 1836 0.0 T 23-04-2016 IPR026284 Alpha-2-macroglobulin domain protein, bacteria THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 SUPERFAMILY SSF48452 154 263 5.48E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 SMART SM00223 39 106 0.0018 T 23-04-2016 IPR000177 Apple domain GO:0005515|GO:0005576|GO:0006508 Reactome: REACT_604 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF00207 Alpha-2-macroglobulin family 1167 1237 2.8E-8 T 23-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Gene3D G3DSA:1.50.10.20 1374 1624 2.2E-33 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF01835 MG2 domain 605 699 2.8E-17 T 23-04-2016 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 PANTHER PTHR40094:SF1 154 1836 1.3E-45 T 23-04-2016 THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 497 598 1.1E-23 T 23-04-2016 IPR021868 Alpha-2-macroglobulin MG1 domain THIMO_RS15075 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF00024 PAN domain 39 89 1.0E-7 T 23-04-2016 IPR003609 PAN/Apple domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 697 0.0 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PANTHER PTHR23115:SF66 310 698 0.0 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF54980 409 487 6.12E-26 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PANTHER PTHR23115 6 184 0.0 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PANTHER PTHR23115:SF66 261 289 0.0 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF50447 271 411 7.07E-36 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Pfam PF00679 Elongation factor G C-terminus 607 692 5.1E-32 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.30.70.870 412 487 2.2E-39 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PANTHER PTHR23115 261 289 0.0 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 1.3E-67 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.1E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.1E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 12 25 6.1E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.1E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 58 66 6.1E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Pfam PF14492 Elongation Factor G, domain II 411 484 3.6E-35 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.30.70.240 607 692 5.9E-35 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 112.096 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:2.40.30.10 312 411 1.4E-36 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PANTHER PTHR23115 310 698 0.0 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF54211 486 606 1.14E-45 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF52540 6 288 3.86E-109 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.30.230.10 491 606 8.1E-53 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Pfam PF03764 Elongation factor G, domain IV 486 604 2.7E-48 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 PANTHER PTHR23115:SF66 6 184 0.0 T 23-04-2016 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 3.3E-33 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SMART SM00889 487 605 3.5E-75 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SMART SM00838 607 694 8.3E-62 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Pfam PF03144 Elongation factor Tu domain 2 331 398 1.6E-18 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.40.50.300 6 293 2.4E-107 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13645 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF54980 610 695 3.2E-31 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 SUPERFAMILY SSF52833 15 124 3.41E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 PANTHER PTHR10438:SF264 13 122 1.8E-26 T 23-04-2016 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 Pfam PF00085 Thioredoxin 19 121 7.7E-23 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 PIRSF PIRSF000077 12 122 2.3E-25 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 ProSitePatterns PS00194 Thioredoxin family active site. 37 55 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 Gene3D G3DSA:3.40.30.10 8 122 1.4E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 PANTHER PTHR10438 13 122 1.8E-26 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 PRINTS PR00421 Thioredoxin family signature 86 97 3.8E-7 T 23-04-2016 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 PRINTS PR00421 Thioredoxin family signature 36 44 3.8E-7 T 23-04-2016 THIMO_RS00635 262214f9bde35a12661e0c92edbe4694 130 PRINTS PR00421 Thioredoxin family signature 44 53 3.8E-7 T 23-04-2016 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SUPERFAMILY SSF52540 6 189 1.12E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF09382 RQC domain 401 513 4.3E-40 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SUPERFAMILY SSF47819 523 599 2.18E-20 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 458 2.1E-154 T 23-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:1.10.10.10 339 514 3.3E-60 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:3.40.50.300 7 193 2.7E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:3.40.50.300 200 337 1.2E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00956 406 509 3.5E-52 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 PANTHER PTHR13710:SF81 6 712 1.8E-271 T 23-04-2016 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:1.10.150.80 527 595 2.3E-16 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF00270 DEAD/DEAH box helicase 22 177 3.6E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 7 596 2.6E-237 T 23-04-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF14493 Helix-turn-helix domain 610 701 7.6E-17 T 23-04-2016 IPR029491 Helicase Helix-turn-helix domain THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF00570 HRDC domain 529 593 2.5E-20 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 PANTHER PTHR13710 6 712 1.8E-271 T 23-04-2016 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00341 524 604 1.5E-19 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00490 243 325 4.1E-22 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SUPERFAMILY SSF52540 200 451 5.74E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF00271 Helicase conserved C-terminal domain 218 325 2.9E-15 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF16124 RecQ zinc-binding 339 399 2.7E-18 T 23-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain THIMO_RS14715 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00487 14 210 2.0E-29 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 6.8E-17 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 6.8E-17 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 6.8E-17 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 Pfam PF00364 Biotin-requiring enzyme 80 152 1.5E-22 T 23-04-2016 IPR000089 Biotin/lipoyl attachment THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 153 8.8E-55 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PANTHER PTHR23151 1 153 6.5E-44 T 23-04-2016 THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 SUPERFAMILY SSF51230 78 153 3.27E-24 T 23-04-2016 IPR011053 Single hybrid motif THIMO_RS00880 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 Gene3D G3DSA:2.40.50.100 78 153 2.3E-30 T 23-04-2016 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 Pfam PF02581 Thiamine monophosphate synthase/TENI 135 319 9.3E-39 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 PRINTS PR00502 NUDIX hydrolase family signature 35 49 6.0E-7 T 23-04-2016 IPR020476 NUDIX hydrolase THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 PRINTS PR00502 NUDIX hydrolase family signature 49 64 6.0E-7 T 23-04-2016 IPR020476 NUDIX hydrolase THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 Pfam PF00293 NUDIX domain 7 127 2.3E-17 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 Gene3D G3DSA:3.90.79.10 5 123 2.2E-33 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 PANTHER PTHR22769 6 198 2.3E-33 T 23-04-2016 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 TIGRFAM TIGR00586 mutt: mutator mutT protein 7 129 7.2E-29 T 23-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 PANTHER PTHR22769:SF35 6 198 2.3E-33 T 23-04-2016 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 Gene3D G3DSA:3.20.20.70 124 325 1.1E-45 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 SUPERFAMILY SSF51391 117 325 3.14E-49 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 THIMO_RS17420 3871031b9bfa8ccd8942765babea3e51 326 SUPERFAMILY SSF55811 6 128 7.72E-34 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 SUPERFAMILY SSF47973 6 149 9.16E-63 T 23-04-2016 IPR023798 Ribosomal protein S7 domain THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 Gene3D G3DSA:1.10.455.10 9 156 9.9E-69 T 23-04-2016 IPR023798 Ribosomal protein S7 domain THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 PIRSF PIRSF002122 2 156 2.5E-62 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.3E-67 T 23-04-2016 IPR023798 Ribosomal protein S7 domain THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 PANTHER PTHR11205 1 156 3.5E-96 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 23-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.3E-68 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS13650 4ee33c4ac17281805095e9b984357f88 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.36 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 2 133 23.274 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 Pfam PF03652 Holliday junction resolvase 3 130 4.1E-38 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 PANTHER PTHR33317 3 129 3.3E-34 T 23-04-2016 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 5 129 6.0E-37 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 Gene3D G3DSA:3.30.420.140 2 132 3.6E-42 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 SMART SM00732 2 102 9.2E-30 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 THIMO_RS12230 34f1e50f4bec5c042b89533befe69b3e 133 SUPERFAMILY SSF53098 2 129 5.46E-37 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 Gene3D G3DSA:3.40.50.300 21 108 2.4E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 Gene3D G3DSA:1.10.10.60 210 249 1.3E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 149 158 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 Gene3D G3DSA:1.10.8.60 110 177 7.2E-17 T 23-04-2016 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 Pfam PF00158 Sigma-54 interaction domain 1 103 2.2E-41 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 PANTHER PTHR32071:SF21 1 267 5.8E-119 T 23-04-2016 IPR029995 Transcriptional regulatory protein FlbD GO:0003700|GO:0006355 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 23 38 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 234 254 4.4E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 217 234 4.4E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 Pfam PF02954 Bacterial regulatory protein, Fis family 211 250 2.1E-14 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 SUPERFAMILY SSF52540 2 175 8.07E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 SUPERFAMILY SSF46689 149 251 4.66E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01285 742b51bb626a2b4e516e0e5d24dc19a8 272 PANTHER PTHR32071 1 267 5.8E-119 T 23-04-2016 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 144 442 1.6E-116 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 SUPERFAMILY SSF54966 4 139 4.71E-49 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 188 196 - T 23-04-2016 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 Gene3D G3DSA:3.20.20.110 139 439 3.3E-111 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 Gene3D G3DSA:3.30.70.150 8 138 4.9E-45 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 SUPERFAMILY SSF51649 140 457 8.64E-111 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 PANTHER PTHR23321 16 446 1.2E-45 T 23-04-2016 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 15 132 6.5E-37 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 Hamap MF_01339 Ribulose bisphosphate carboxylase [cbbM]. 3 461 77.999 T 23-04-2016 IPR020871 Ribulose bisphosphate carboxylase GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15900 dcf7a780dfe66e494378b158d1aac8d2 464 PANTHER PTHR23321:SF19 16 446 1.2E-45 T 23-04-2016 THIMO_RS02660 e849b2f21290c9d98fee3ef60bf7ee50 201 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 185 7.5E-50 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 THIMO_RS02660 e849b2f21290c9d98fee3ef60bf7ee50 201 SMART SM01207 9 186 9.8E-78 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 THIMO_RS02660 e849b2f21290c9d98fee3ef60bf7ee50 201 PANTHER PTHR30309 1 193 1.8E-65 T 23-04-2016 THIMO_RS02660 e849b2f21290c9d98fee3ef60bf7ee50 201 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 5 193 3.2E-57 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 THIMO_RS02660 e849b2f21290c9d98fee3ef60bf7ee50 201 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 6 194 19.467 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 THIMO_RS02660 e849b2f21290c9d98fee3ef60bf7ee50 201 PANTHER PTHR30309:SF0 1 193 1.8E-65 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 THIMO_RS12285 4737a2288b3a372483903c57b16e7076 294 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 61 222 1.1E-26 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS12285 4737a2288b3a372483903c57b16e7076 294 PANTHER PTHR30134:SF0 1 258 1.1E-104 T 23-04-2016 THIMO_RS12285 4737a2288b3a372483903c57b16e7076 294 PANTHER PTHR30134 1 258 1.1E-104 T 23-04-2016 THIMO_RS12285 4737a2288b3a372483903c57b16e7076 294 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 35 244 1.0E-77 T 23-04-2016 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 THIMO_RS12285 4737a2288b3a372483903c57b16e7076 294 SUPERFAMILY SSF52540 32 246 3.23E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12285 4737a2288b3a372483903c57b16e7076 294 Gene3D G3DSA:3.40.50.300 68 227 8.1E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 SUPERFAMILY SSF52218 3 198 1.4E-60 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 Gene3D G3DSA:3.40.50.360 1 204 2.5E-76 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 197 1.5E-98 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 2 201 43.039 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 Pfam PF03358 NADPH-dependent FMN reductase 18 143 4.4E-11 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 PANTHER PTHR30546:SF10 3 199 1.4E-119 T 23-04-2016 THIMO_RS06630 571b8a090db616c522e2ae6f46be9c1d 210 PANTHER PTHR30546 3 199 1.4E-119 T 23-04-2016 THIMO_RS07010 d4538b544ce02d0beca61e92fa0f1c11 218 PANTHER PTHR34606 37 211 8.8E-31 T 23-04-2016 THIMO_RS07010 d4538b544ce02d0beca61e92fa0f1c11 218 Pfam PF04972 BON domain 77 136 2.6E-8 T 23-04-2016 IPR007055 BON domain THIMO_RS07010 d4538b544ce02d0beca61e92fa0f1c11 218 Pfam PF04972 BON domain 146 210 6.3E-9 T 23-04-2016 IPR007055 BON domain THIMO_RS07010 d4538b544ce02d0beca61e92fa0f1c11 218 PANTHER PTHR34606:SF4 37 211 8.8E-31 T 23-04-2016 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 SUPERFAMILY SSF53790 2 249 2.88E-60 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 2.7E-37 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 PANTHER PTHR21091:SF17 1 209 1.2E-54 T 23-04-2016 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 249 8.4E-90 T 23-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 Gene3D G3DSA:3.40.1010.10 2 110 1.4E-27 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 PANTHER PTHR21091 1 209 1.2E-54 T 23-04-2016 THIMO_RS16865 95bc94c9b87b6f7eed5fc886b0acdaa2 254 Gene3D G3DSA:3.30.950.10 111 232 5.4E-37 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 360 438 3.5E-27 T 23-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 PIRSF PIRSF006485 1 446 4.8E-163 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Gene3D G3DSA:3.40.50.300 178 363 1.5E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Gene3D G3DSA:3.40.50.300 3 163 5.5E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 438 8.3E-164 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 PANTHER PTHR11649:SF5 1 439 9.4E-140 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Gene3D G3DSA:3.30.300.20 364 439 4.3E-25 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 SUPERFAMILY SSF52540 137 444 6.07E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 SUPERFAMILY SSF52540 4 162 1.82E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Hamap MF_00195 GTPase Der [der]. 2 441 36.506 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 182 348 6.1E-24 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 152 3.5E-17 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Pfam PF01926 50S ribosome-binding GTPase 184 302 3.0E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 Pfam PF01926 50S ribosome-binding GTPase 5 119 3.5E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.7E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 2.7E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS09025 6fbc35272fcda0de31b26293d57a9c2f 470 PANTHER PTHR11649 1 439 9.4E-140 T 23-04-2016 THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 Gene3D G3DSA:3.40.1280.10 3 242 8.9E-76 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 SUPERFAMILY SSF75217 74 241 1.09E-50 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 Pfam PF04452 RNA methyltransferase 24 236 7.2E-66 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 PIRSF PIRSF015601 3 240 1.7E-54 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 SUPERFAMILY SSF88697 4 68 5.14E-13 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 7 240 6.7E-59 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 PANTHER PTHR30027 1 244 4.2E-78 T 23-04-2016 THIMO_RS05080 ce51b2e50c3cde132c8c8225d5ab59de 246 PANTHER PTHR30027:SF3 1 244 4.2E-78 T 23-04-2016 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF55785 274 347 5.76E-13 T 23-04-2016 IPR000014 PAS domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.30.70.270 357 525 4.0E-56 T 23-04-2016 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.30.450.20 78 206 2.5E-19 T 23-04-2016 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF55785 78 206 7.68E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF55073 361 518 1.65E-48 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00052 527 773 1.1E-61 T 23-04-2016 IPR001633 EAL domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 PANTHER PTHR10799 333 627 6.5E-73 T 23-04-2016 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF141868 532 781 1.18E-62 T 23-04-2016 IPR001633 EAL domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00091 91 157 8.3E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00267 344 517 2.2E-53 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF00989 PAS fold 92 205 6.0E-10 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 89 214 1.9E-9 T 23-04-2016 IPR000014 PAS domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF00563 EAL domain 533 768 4.3E-52 T 23-04-2016 IPR001633 EAL domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 PANTHER PTHR10799:SF774 333 627 6.5E-73 T 23-04-2016 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 355 514 1.4E-39 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF00990 Diguanylate cyclase, GGDEF domain 356 511 6.5E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF08447 PAS fold 265 333 8.1E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00086 303 345 0.002 T 23-04-2016 IPR001610 PAC motif THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00086 163 208 40.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.30.450.20 212 343 6.4E-16 T 23-04-2016 THIMO_RS11915 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.20.20.450 530 779 9.7E-68 T 23-04-2016 IPR001633 EAL domain THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 SUPERFAMILY SSF51971 380 481 1.65E-9 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:3.50.50.60 246 398 6.0E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 152 174 2.2E-23 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 2.2E-23 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 175 188 2.2E-23 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 217 227 2.2E-23 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 152 468 2.1E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 SUPERFAMILY SSF51971 151 412 3.65E-58 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 PANTHER PTHR11938 40 479 1.1E-116 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:1.10.1060.10 3 151 6.8E-36 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 SUPERFAMILY SSF46548 4 161 5.75E-32 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 130 7.3E-23 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:3.50.50.60 399 480 9.6E-16 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:3.50.50.60 152 245 1.7E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 PANTHER PTHR11938:SF75 40 479 1.1E-116 T 23-04-2016 THIMO_RS06705 e3cc78dabf7b6260dc232a8e0bd7e191 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 5 486 1.0E-169 T 23-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 THIMO_RS01605 4c9d68bb05d2e44f8801f43c700b75e6 375 SUPERFAMILY SSF53448 9 182 1.15E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS01605 4c9d68bb05d2e44f8801f43c700b75e6 375 Pfam PF00535 Glycosyl transferase family 2 17 181 2.9E-32 T 23-04-2016 IPR001173 Glycosyltransferase 2-like THIMO_RS01605 4c9d68bb05d2e44f8801f43c700b75e6 375 PANTHER PTHR10859 14 303 7.5E-62 T 23-04-2016 THIMO_RS01605 4c9d68bb05d2e44f8801f43c700b75e6 375 Pfam PF04138 GtrA-like protein 253 369 3.2E-17 T 23-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 THIMO_RS01605 4c9d68bb05d2e44f8801f43c700b75e6 375 PANTHER PTHR10859:SF37 14 303 7.5E-62 T 23-04-2016 THIMO_RS01605 4c9d68bb05d2e44f8801f43c700b75e6 375 Gene3D G3DSA:3.90.550.10 14 150 1.7E-26 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 Pfam PF14841 FliG middle domain 119 189 1.3E-22 T 23-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 SUPERFAMILY SSF48029 119 327 1.7E-60 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 Gene3D G3DSA:1.10.220.30 11 72 3.7E-12 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 Gene3D G3DSA:1.10.220.30 110 190 3.9E-23 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PIRSF PIRSF003161 3 334 5.5E-99 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 Gene3D G3DSA:1.10.220.30 237 331 3.9E-34 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PANTHER PTHR30534:SF0 1 334 6.1E-91 T 23-04-2016 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 SUPERFAMILY SSF48029 10 104 1.23E-15 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 8 331 1.3E-86 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 38 64 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 229 249 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 251 271 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 198 223 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 9 25 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 275 301 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 117 140 6.2E-55 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 PANTHER PTHR30534 1 334 6.1E-91 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 Pfam PF01706 FliG C-terminal domain 220 327 4.3E-36 T 23-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal THIMO_RS01300 759c2627714cd5ea551f664bc8072bf1 334 Pfam PF14842 FliG N-terminal domain 9 105 2.6E-24 T 23-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 Gene3D G3DSA:3.40.50.1370 15 158 9.9E-49 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 61 80 2.3E-21 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 2.3E-21 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 147 158 2.3E-21 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 280 303 2.3E-21 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 168 313 1.1E-25 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PANTHER PTHR11405:SF16 15 320 3.4E-126 T 23-04-2016 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PANTHER PTHR11405 15 320 3.4E-126 T 23-04-2016 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 15 315 4.0E-91 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 Gene3D G3DSA:3.40.50.1370 159 294 2.0E-49 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 14 317 41.404 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 SUPERFAMILY SSF53671 14 317 7.07E-97 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 61 68 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 15 159 3.1E-38 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 51 73 4.4E-33 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 272 277 4.4E-33 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 89 98 4.4E-33 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 146 163 4.4E-33 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 231 240 4.4E-33 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS12240 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 296 310 4.4E-33 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 Gene3D G3DSA:3.40.50.300 34 197 7.8E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 SUPERFAMILY SSF52540 32 295 2.99E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 Gene3D G3DSA:1.10.8.300 213 299 2.2E-25 T 23-04-2016 THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 51 181 1.0E-61 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 PANTHER PTHR11603 19 297 9.0E-139 T 23-04-2016 THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 PANTHER PTHR11603:SF155 19 297 9.0E-139 T 23-04-2016 THIMO_RS03165 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 PIRSF PIRSF002849 3 319 1.4E-116 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 Pfam PF01467 Cytidylyltransferase-like 5 133 1.3E-21 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 SUPERFAMILY SSF52374 1 157 2.49E-42 T 23-04-2016 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PANTHER PTHR21342 1 157 7.3E-75 T 23-04-2016 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 Gene3D G3DSA:3.40.50.620 1 157 5.0E-53 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 61 2.1E-15 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PANTHER PTHR21342:SF1 1 157 7.3E-75 T 23-04-2016 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 8.6E-51 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 8.6E-51 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 8.6E-51 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 8.6E-51 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 8.6E-51 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 157 1.5E-58 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS17220 e9eaa7668fb595ae70c9fa3c171b816d 158 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 35.471 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 Pfam PF00072 Response regulator receiver domain 8 116 7.4E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 SUPERFAMILY SSF46894 128 230 3.4E-26 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 SUPERFAMILY SSF52172 3 128 7.26E-39 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 PANTHER PTHR26402 5 229 1.1E-82 T 23-04-2016 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 SMART SM00862 151 229 4.4E-24 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 SMART SM00448 5 116 4.4E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 Gene3D G3DSA:3.40.50.2300 3 123 1.1E-37 T 23-04-2016 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 Gene3D G3DSA:1.10.10.10 129 229 1.1E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 2.6E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS10280 b0980af97d2ed67518440252657dee4b 238 PANTHER PTHR26402:SF50 5 229 1.1E-82 T 23-04-2016 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PANTHER PTHR30376 1 274 2.5E-113 T 23-04-2016 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Pfam PF04545 Sigma-70, region 4 224 274 7.3E-16 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Gene3D G3DSA:1.10.10.10 218 276 5.6E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Pfam PF04542 Sigma-70 region 2 50 119 1.1E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 45 277 6.9E-33 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Gene3D G3DSA:1.10.601.10 13 119 2.3E-34 T 23-04-2016 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 SUPERFAMILY SSF88659 188 277 1.16E-18 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 1 279 48.599 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 74 87 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 247 273 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 228 240 4.2E-18 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 74 87 4.2E-18 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 262 273 4.2E-18 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 247 262 4.2E-18 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 11 277 4.6E-119 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 THIMO_RS17185 83ecdf4e0f3b0673f4bfaba0635b4de3 279 SUPERFAMILY SSF88946 9 119 9.55E-39 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 Hamap MF_01201 Alanine racemase. 3 359 33.499 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 Pfam PF01168 Alanine racemase, N-terminal domain 10 221 1.1E-62 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 Pfam PF00842 Alanine racemase, C-terminal domain 235 355 8.5E-38 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 SUPERFAMILY SSF50621 228 355 4.88E-45 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 SUPERFAMILY SSF51419 10 236 7.2E-64 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 Gene3D G3DSA:2.40.37.10 215 355 3.5E-53 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 Gene3D G3DSA:3.20.20.10 13 214 1.9E-64 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 341 354 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 251 266 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 289 306 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 62 80 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 268 283 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 194 221 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 122 134 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 157 168 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 28 44 2.8E-71 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 33 43 - T 23-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PANTHER PTHR30511:SF4 1 364 1.8E-142 T 23-04-2016 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 TIGRFAM TIGR00492 alr: alanine racemase 8 355 1.2E-108 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 PANTHER PTHR30511 1 364 1.8E-142 T 23-04-2016 THIMO_RS07245 31ebbdbbcd7cf83cc1132661796bfd45 369 SMART SM01005 235 359 4.1E-61 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 6 1182 0.0 T 23-04-2016 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.50.920 261 418 1.9E-57 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF10371 Domain of unknown function 634 687 7.3E-23 T 23-04-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 SMART SM00890 631 688 3.4E-29 T 23-04-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 755 766 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.30.70.20 680 787 3.8E-18 T 23-04-2016 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 PANTHER PTHR32154:SF0 4 1191 0.0 T 23-04-2016 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:4.10.780.10 637 677 1.2E-17 T 23-04-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 22 248 1.2E-76 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 971 1083 1.2E-7 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 433 617 1.0E-29 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF52518 804 1188 1.01E-125 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.920.10 424 629 3.1E-77 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 PANTHER PTHR32154 4 1191 0.0 T 23-04-2016 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 270 352 2.6E-12 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.50.970 806 1183 1.6E-131 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF52518 4 259 6.47E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.50.970 4 259 5.2E-105 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF54862 674 849 2.09E-22 T 23-04-2016 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF13484 4Fe-4S double cluster binding domain 698 767 1.8E-11 T 23-04-2016 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 PIRSF PIRSF000159 1 1192 0.0 T 23-04-2016 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF52922 261 418 3.43E-42 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS06740 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF53323 424 677 2.09E-78 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 SUPERFAMILY SSF55031 181 295 1.5E-21 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 PANTHER PTHR11014:SF75 8 386 7.2E-135 T 23-04-2016 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 Pfam PF01546 Peptidase family M20/M25/M40 77 379 4.2E-31 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 Gene3D G3DSA:3.40.630.10 323 382 1.1E-57 T 23-04-2016 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 Gene3D G3DSA:3.40.630.10 8 189 1.1E-57 T 23-04-2016 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 Gene3D G3DSA:3.30.70.360 190 287 1.9E-21 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 Pfam PF07687 Peptidase dimerisation domain 179 287 2.2E-20 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 PANTHER PTHR11014 8 386 7.2E-135 T 23-04-2016 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 SUPERFAMILY SSF53187 6 180 5.71E-57 T 23-04-2016 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 SUPERFAMILY SSF53187 301 382 5.71E-57 T 23-04-2016 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 11 376 9.3E-113 T 23-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 THIMO_RS13305 5ef56a669b4b8303df5a256561f4d9b8 397 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 146 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.744 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 PANTHER PTHR11229 1 211 2.8E-114 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 23-04-2016 IPR019926 Ribosomal protein L3, conserved site THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 Gene3D G3DSA:4.10.960.10 78 160 7.3E-32 T 23-04-2016 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 SUPERFAMILY SSF50447 1 213 5.74E-81 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 Gene3D G3DSA:2.40.30.10 4 33 1.1E-11 T 23-04-2016 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 Gene3D G3DSA:2.40.30.10 161 200 1.1E-11 T 23-04-2016 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 206 3.0E-86 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13630 a6842a81fc7fc34af72f313be573d92d 217 Pfam PF00297 Ribosomal protein L3 101 186 1.2E-19 T 23-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 423 1.3E-168 T 23-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 SUPERFAMILY SSF47005 123 165 1.57E-9 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 Gene3D G3DSA:3.30.559.10 192 422 2.8E-91 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 SUPERFAMILY SSF52777 194 422 1.47E-88 T 23-04-2016 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 PANTHER PTHR23151:SF47 3 422 5.2E-223 T 23-04-2016 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 Pfam PF00364 Biotin-requiring enzyme 4 76 3.2E-18 T 23-04-2016 IPR000089 Biotin/lipoyl attachment THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 Gene3D G3DSA:4.10.320.10 128 166 8.5E-14 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 SUPERFAMILY SSF51230 1 95 1.16E-24 T 23-04-2016 IPR011053 Single hybrid motif THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 Gene3D G3DSA:2.40.50.100 1 94 3.6E-23 T 23-04-2016 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 194 422 2.5E-81 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 PANTHER PTHR23151 3 422 5.2E-223 T 23-04-2016 THIMO_RS03260 882c7d46cc6873d9d7a67010190a383f 424 Pfam PF02817 e3 binding domain 128 160 2.0E-10 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 113 123 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 6 184 35.184 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 7 191 4.6E-64 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 SUPERFAMILY SSF53178 6 191 5.23E-67 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 Pfam PF01195 Peptidyl-tRNA hydrolase 8 189 3.4E-56 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 19 32 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 Gene3D G3DSA:3.40.50.1470 5 191 1.1E-69 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 THIMO_RS14905 f624466e32aeb9c50c9f76dad54f8f7d 195 PANTHER PTHR17224 1 191 1.4E-75 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 THIMO_RS05425 42251c996f4f01c1b35da010c6c08fe9 369 SUPERFAMILY SSF53187 20 319 6.95E-70 T 23-04-2016 THIMO_RS05425 42251c996f4f01c1b35da010c6c08fe9 369 PANTHER PTHR37326 6 338 1.6E-96 T 23-04-2016 THIMO_RS05425 42251c996f4f01c1b35da010c6c08fe9 369 Gene3D G3DSA:3.40.630.10 36 229 4.9E-25 T 23-04-2016 THIMO_RS05425 42251c996f4f01c1b35da010c6c08fe9 369 PIRSF PIRSF039012 6 326 5.5E-84 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 THIMO_RS05425 42251c996f4f01c1b35da010c6c08fe9 369 PANTHER PTHR37326:SF1 6 338 1.6E-96 T 23-04-2016 THIMO_RS05425 42251c996f4f01c1b35da010c6c08fe9 369 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 46 319 1.4E-52 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 PANTHER PTHR11082 1 299 2.1E-143 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 77 95 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 310 48.653 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 Pfam PF01207 Dihydrouridine synthase (Dus) 1 302 1.5E-81 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 SUPERFAMILY SSF51395 1 292 4.12E-74 T 23-04-2016 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 PANTHER PTHR11082:SF29 1 299 2.1E-143 T 23-04-2016 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 1 306 2.3E-132 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 Gene3D G3DSA:3.20.20.70 1 239 2.0E-73 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS10555 fd2f706b8d31259e680b39dc379ca99e 310 PIRSF PIRSF006621 1 297 6.1E-70 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 Pfam PF03602 Conserved hypothetical protein 95 13 185 8.2E-50 T 23-04-2016 THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 6 187 9.2E-46 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 Gene3D G3DSA:3.40.50.150 7 188 1.9E-58 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 125 131 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 PIRSF PIRSF004553 12 191 6.3E-47 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 PANTHER PTHR18895:SF60 1 187 3.7E-36 T 23-04-2016 THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 SUPERFAMILY SSF53335 13 184 1.97E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS17215 078fbcee1412076c7637afd5ac4398b7 196 PANTHER PTHR18895 1 187 3.7E-36 T 23-04-2016 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 PANTHER PTHR21000 1 371 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 PANTHER PTHR21000 406 612 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 44.935 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 Pfam PF00920 Dehydratase family 34 607 3.1E-218 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 SUPERFAMILY SSF143975 3 420 8.5E-135 T 23-04-2016 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 SUPERFAMILY SSF52016 421 611 8.63E-59 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 2.3E-247 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 PANTHER PTHR21000:SF11 1 371 0.0 T 23-04-2016 THIMO_RS11335 1f60b191561ba51df5cd21c24a8866b4 614 PANTHER PTHR21000:SF11 406 612 0.0 T 23-04-2016 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 PANTHER PTHR11695 15 334 5.2E-90 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 Gene3D G3DSA:3.40.50.720 152 260 4.3E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 SUPERFAMILY SSF50129 1 150 2.43E-36 T 23-04-2016 IPR011032 GroES-like THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 9.2E-9 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 146 167 - T 23-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 SMART SM00829 10 329 1.4E-39 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 Pfam PF13602 Zinc-binding dehydrogenase 189 329 3.8E-30 T 23-04-2016 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 Gene3D G3DSA:3.90.180.10 1 151 1.1E-42 T 23-04-2016 IPR011032 GroES-like THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 PANTHER PTHR11695:SF294 15 334 5.2E-90 T 23-04-2016 THIMO_RS08315 9cea3440eac74f502adf5041a4df20b7 334 SUPERFAMILY SSF51735 118 296 2.02E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15470 8323c4ecd64c32b202a1cd08ac62408b 94 SUPERFAMILY SSF54292 5 92 1.12E-22 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS15470 8323c4ecd64c32b202a1cd08ac62408b 94 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 84 1.2E-14 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS15470 8323c4ecd64c32b202a1cd08ac62408b 94 Gene3D G3DSA:3.10.20.30 3 92 8.6E-22 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS15470 8323c4ecd64c32b202a1cd08ac62408b 94 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 173 189 1.6E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 204 1.6E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 PANTHER PTHR24567:SF27 17 214 2.4E-98 T 23-04-2016 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 ProSitePatterns PS00042 Crp-type HTH domain signature. 175 198 - T 23-04-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 Gene3D G3DSA:1.10.10.10 150 214 5.4E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 Pfam PF00325 Bacterial regulatory proteins, crp family 173 204 3.3E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 SUPERFAMILY SSF46785 146 214 6.96E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 SMART SM00100 4 124 3.7E-16 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 SUPERFAMILY SSF51206 12 143 1.7E-25 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 SMART SM00419 167 215 1.4E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 Gene3D G3DSA:2.60.120.10 14 149 8.4E-27 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 Pfam PF00027 Cyclic nucleotide-binding domain 24 111 1.2E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS05635 64eaabba8a996d568da451e9e326f561 217 PANTHER PTHR24567 17 214 2.4E-98 T 23-04-2016 THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 SUPERFAMILY SSF50249 178 545 1.63E-84 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 Gene3D G3DSA:1.10.10.10 155 222 1.8E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 PANTHER PTHR23355:SF5 178 579 4.8E-74 T 23-04-2016 THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 SMART SM00955 232 504 2.7E-63 T 23-04-2016 THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 Gene3D G3DSA:2.40.50.140 548 604 2.6E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 Pfam PF00773 RNB domain 232 503 6.7E-46 T 23-04-2016 THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 SUPERFAMILY SSF50249 548 604 1.18E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09345 943c72efe62a793ce2b4a57fc66fba2d 607 PANTHER PTHR23355 178 579 4.8E-74 T 23-04-2016 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 255 356 1.29E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PANTHER PTHR10724 1 514 8.3E-258 T 23-04-2016 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 190 260 8.5E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 102 171 1.4E-12 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 361 434 7.5E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 448 520 3.1E-17 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 19 86 1.4E-5 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 275 347 1.5E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.1E-87 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PIRSF PIRSF002111 1 534 2.4E-215 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 1 112 1.25E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 PANTHER PTHR10724:SF6 1 514 8.3E-258 T 23-04-2016 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.4E-217 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 21 101 1.1E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 279 361 1.1E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 449 520 6.1E-21 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 275 347 2.9E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 103 171 1.5E-9 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 19 87 4.5E-7 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 190 260 5.0E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 362 434 1.3E-20 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 347 438 5.89E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 362 442 9.1E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 102 185 5.37E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 175 264 4.1E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 431 533 2.54E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 102 172 6.4E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 443 521 1.9E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08985 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 189 277 2.39E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 6 265 37.24 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 PANTHER PTHR22854:SF2 1 264 2.2E-112 T 23-04-2016 THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 SUPERFAMILY SSF51366 15 265 1.53E-88 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 59 77 - T 23-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 Pfam PF00218 Indole-3-glycerol phosphate synthase 8 263 1.1E-97 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 PANTHER PTHR22854 1 264 2.2E-112 T 23-04-2016 THIMO_RS05630 4f2fd125aca8280ba920090b7423ab75 267 Gene3D G3DSA:3.20.20.70 5 265 7.5E-110 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 917 1134 9.0E-78 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1466 1505 9.6E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 962 1001 1.6E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1382 1421 1.3E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1130 1169 2.3E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1004 1043 1.3E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1424 1463 7.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1340 1379 6.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 920 959 7.3E-12 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1298 1337 3.0E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1256 1295 6.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1214 1253 6.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1046 1085 8.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1088 1127 8.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1172 1211 7.1E-11 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 1137 1370 1.7E-93 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 1371 1522 7.3E-50 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1390 1421 1.1E-7 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1348 1379 4.8E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1096 1127 4.3E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1474 1504 1.6E-7 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1264 1295 4.8E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 970 1001 2.2E-7 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1222 1253 4.8E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1133 1169 4.2E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 923 959 9.0E-9 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1432 1463 4.4E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1012 1043 1.1E-7 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1180 1211 4.4E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1306 1337 8.0E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1054 1085 4.3E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 PRINTS PR00320 G protein beta WD-40 repeat signature 988 1002 4.7E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 PRINTS PR00320 G protein beta WD-40 repeat signature 1030 1044 4.7E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 PRINTS PR00320 G protein beta WD-40 repeat signature 1156 1170 4.7E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 PANTHER PTHR22847 895 909 8.6E-172 T 23-04-2016 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 PANTHER PTHR22847 930 1509 8.6E-172 T 23-04-2016 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF50978 1306 1537 1.05E-73 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF05729 NACHT domain 363 484 4.1E-7 T 23-04-2016 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF50998 920 1089 2.12E-56 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF52540 345 554 3.55E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF50978 1055 1380 1.03E-110 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF52200 134 235 1.05E-5 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1324 1338 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1114 1128 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1450 1464 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1240 1254 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1030 1044 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1366 1380 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1156 1170 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 946 960 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1492 1506 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1282 1296 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1072 1086 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1198 1212 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1408 1422 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 988 1002 - T 23-04-2016 IPR019775 WD40 repeat, conserved site THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF13676 TIR domain 140 236 1.3E-7 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF13599 Pentapeptide repeats (9 copies) 818 876 3.6E-10 T 23-04-2016 IPR001646 Pentapeptide repeat THIMO_RS18020 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF141571 781 893 1.96E-21 T 23-04-2016 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 169 188 4.1E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 4.1E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 98 112 4.1E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 SUPERFAMILY SSF55957 370 462 1.2E-16 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 155 253 7.0E-19 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 SUPERFAMILY SSF53738 10 140 9.42E-34 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Gene3D G3DSA:3.40.120.10 10 146 5.4E-30 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 SUPERFAMILY SSF53738 258 364 1.14E-25 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 10 140 4.3E-28 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 PANTHER PTHR22573:SF28 9 462 2.8E-121 T 23-04-2016 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 SUPERFAMILY SSF53738 153 255 3.61E-20 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Gene3D G3DSA:3.40.120.10 171 249 9.0E-20 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Gene3D G3DSA:3.40.120.10 250 366 1.6E-32 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Gene3D G3DSA:3.30.310.50 370 460 7.2E-20 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 365 4.4E-13 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 PANTHER PTHR22573 9 462 2.8E-121 T 23-04-2016 THIMO_RS03555 a3c3d87966ab465b4836959e7173ea8f 463 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 386 451 2.8E-8 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 11 193 1.5E-66 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 PANTHER PTHR19136 8 203 2.6E-42 T 23-04-2016 THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 SUPERFAMILY SSF53448 11 192 1.1E-33 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 9 196 28.253 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 PANTHER PTHR19136:SF81 8 203 2.6E-42 T 23-04-2016 THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 Gene3D G3DSA:3.90.550.10 10 200 1.6E-53 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS01980 680a22fefcd95e59bcada5444466d6cc 206 Pfam PF12804 MobA-like NTP transferase domain 13 162 2.5E-34 T 23-04-2016 IPR025877 MobA-like NTP transferase THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 Gene3D G3DSA:3.40.50.261 242 383 2.0E-62 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 Gene3D G3DSA:3.30.470.20 96 239 8.7E-57 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 Pfam PF08442 ATP-grasp domain 2 202 1.0E-78 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 SUPERFAMILY SSF56059 1 238 2.16E-83 T 23-04-2016 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 SUPERFAMILY SSF52210 241 384 2.22E-52 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 Gene3D G3DSA:3.30.1490.20 22 95 1.3E-35 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 PANTHER PTHR11815 1 386 3.9E-223 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 7.7E-158 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 PIRSF PIRSF001554 1 386 6.8E-151 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.244 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 THIMO_RS01160 46cb4b929ac3535f38bd00b5246c204c 386 Pfam PF00549 CoA-ligase 262 382 1.6E-24 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 PANTHER PTHR10366 2 235 1.4E-73 T 23-04-2016 THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 PANTHER PTHR10366 256 315 1.4E-73 T 23-04-2016 THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 SUPERFAMILY SSF51735 1 291 3.38E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 Pfam PF13460 NAD(P)H-binding 7 110 3.8E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 Gene3D G3DSA:3.40.50.720 1 226 2.7E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 Pfam PF11066 Protein of unknown function (DUF2867) 333 461 1.1E-20 T 23-04-2016 IPR021295 Protein of unknown function DUF2867 THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 Gene3D G3DSA:3.30.530.20 324 439 3.5E-6 T 23-04-2016 IPR023393 START-like domain THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 PANTHER PTHR10366:SF401 2 235 1.4E-73 T 23-04-2016 THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 PANTHER PTHR10366:SF401 256 315 1.4E-73 T 23-04-2016 THIMO_RS15655 4eaf5415866a57d316e56c95576978f4 481 SUPERFAMILY SSF55961 324 471 2.26E-14 T 23-04-2016 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PANTHER PTHR30115:SF12 1 112 3.5E-68 T 23-04-2016 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 SUPERFAMILY SSF54913 1 112 2.54E-45 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PIRSF PIRSF039144 1 112 3.4E-53 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 Gene3D G3DSA:3.30.70.120 1 112 9.6E-50 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 2 17 4.6E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 23 41 4.6E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 83 103 4.6E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 52 75 4.6E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 SMART SM00938 4 105 4.1E-64 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.1E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS00465 7d7735dc3e6c80519ca7cf889de861ef 112 PANTHER PTHR30115 1 112 3.5E-68 T 23-04-2016 THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.40.50.720 172 284 7.1E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.90.180.10 79 171 1.0E-16 T 23-04-2016 IPR011032 GroES-like THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF51735 143 328 2.86E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF50129 87 176 1.4E-20 T 23-04-2016 IPR011032 GroES-like THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF50129 9 55 1.4E-20 T 23-04-2016 IPR011032 GroES-like THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 SMART SM00829 78 365 4.8E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 Pfam PF00107 Zinc-binding dehydrogenase 178 295 1.3E-17 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 398 516 1.8E-17 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.40.50.720 397 525 4.0E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF55347 553 682 3.05E-12 T 23-04-2016 THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF51735 395 560 3.78E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.30.360.10 526 701 6.0E-24 T 23-04-2016 THIMO_RS04805 1d1e32b86aa5246a4d38cda8540ce693 709 PANTHER PTHR11695 99 376 5.5E-49 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Pfam PF00270 DEAD/DEAH box helicase 25 193 3.6E-52 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Gene3D G3DSA:3.40.50.300 210 367 2.4E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SMART SM00490 256 337 1.8E-28 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 PANTHER PTHR24031 1 365 2.8E-183 T 23-04-2016 THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SUPERFAMILY SSF52540 1 207 1.03E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SUPERFAMILY SSF52540 144 351 4.35E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 PANTHER PTHR24031:SF0 1 365 2.8E-183 T 23-04-2016 THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SMART SM00487 20 220 3.2E-62 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Pfam PF00271 Helicase conserved C-terminal domain 231 337 5.0E-24 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site THIMO_RS09190 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Gene3D G3DSA:3.40.50.300 1 209 8.4E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.404 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 1.0E-30 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 PANTHER PTHR36965:SF1 2 90 8.3E-47 T 23-04-2016 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 7.2E-44 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 PANTHER PTHR36965 2 90 8.3E-47 T 23-04-2016 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 Gene3D G3DSA:1.10.3880.10 1 89 1.2E-41 T 23-04-2016 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 PIRSF PIRSF029827 1 90 5.1E-39 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 THIMO_RS09740 8019f2347230b50aa398dc2b24956d32 90 SUPERFAMILY SSF111148 1 89 7.85E-40 T 23-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 THIMO_RS13255 d802b6a964b0fb0a8f9d460502e50514 293 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 5 280 4.7E-62 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 THIMO_RS13255 d802b6a964b0fb0a8f9d460502e50514 293 PIRSF PIRSF038471 2 282 1.5E-73 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 THIMO_RS13255 d802b6a964b0fb0a8f9d460502e50514 293 PANTHER PTHR34138 1 271 4.9E-71 T 23-04-2016 THIMO_RS13255 d802b6a964b0fb0a8f9d460502e50514 293 Pfam PF04085 rod shape-determining protein MreC 126 269 1.4E-31 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 THIMO_RS13255 d802b6a964b0fb0a8f9d460502e50514 293 PANTHER PTHR34138:SF1 1 271 4.9E-71 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.70.1430 556 650 1.1E-8 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.70.1430 41 141 1.5E-24 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PANTHER PTHR32063 1 1007 0.0 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 43 130 3.14E-20 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PANTHER PTHR32063:SF28 1 1007 0.0 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 267 323 3.14E-24 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 137 181 3.14E-24 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Pfam PF00873 AcrB/AcrD/AcrF family 4 1005 2.6E-256 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82866 785 1009 4.84E-44 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.2090.10 183 265 5.2E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.2090.10 702 784 1.7E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 3.3E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 553 650 2.3E-15 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:1.10.3850.10 794 1007 1.1E-57 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82866 289 488 4.45E-47 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:1.20.1640.10 284 497 1.4E-56 T 23-04-2016 THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82714 183 264 2.09E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS08935 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82714 701 786 1.44E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Gene3D G3DSA:3.40.50.2300 498 621 4.0E-21 T 23-04-2016 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 318 5.0E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SMART SM00388 253 318 3.0E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SUPERFAMILY SSF52172 649 770 7.54E-39 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PANTHER PTHR24423 232 487 1.1E-154 T 23-04-2016 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PANTHER PTHR24423 626 771 1.1E-154 T 23-04-2016 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PANTHER PTHR24423 20 25 1.1E-154 T 23-04-2016 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SUPERFAMILY SSF52172 496 620 2.28E-21 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Pfam PF00072 Response regulator receiver domain 503 614 1.1E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Pfam PF00072 Response regulator receiver domain 651 758 3.1E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 481 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 423 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 437 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Gene3D G3DSA:1.10.287.130 245 303 1.5E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Gene3D G3DSA:3.40.50.2300 650 771 6.5E-42 T 23-04-2016 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SMART SM00387 365 484 1.8E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Gene3D G3DSA:3.30.565.10 304 485 1.8E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SUPERFAMILY SSF47384 237 319 4.9E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SMART SM00448 500 615 3.8E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SMART SM00448 649 765 1.4E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 483 5.7E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02550 2b954fbc27f18c7b8e5466338fded6c8 776 SUPERFAMILY SSF55874 307 486 1.28E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 3.3E-31 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 Gene3D G3DSA:3.40.30.10 2 103 2.4E-33 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 PANTHER PTHR10438 2 108 2.8E-41 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 SUPERFAMILY SSF52833 2 103 7.28E-36 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 PRINTS PR00421 Thioredoxin family signature 68 79 1.2E-8 T 23-04-2016 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 PRINTS PR00421 Thioredoxin family signature 29 38 1.2E-8 T 23-04-2016 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 PRINTS PR00421 Thioredoxin family signature 21 29 1.2E-8 T 23-04-2016 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 Pfam PF00085 Thioredoxin 3 102 5.2E-28 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 PIRSF PIRSF000077 1 104 1.3E-28 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS04050 57e8b4340eda3866e0134a068a43a303 123 PANTHER PTHR10438:SF266 2 108 2.8E-41 T 23-04-2016 THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 1.0E-5 T 23-04-2016 THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PANTHER PTHR24322 10 138 6.2E-70 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PANTHER PTHR24322 154 186 6.2E-70 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 SUPERFAMILY SSF51735 4 246 1.17E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.0E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.0E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.0E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.5E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.5E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.5E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.5E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.5E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 244 5.2E-98 T 23-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 2.2E-63 T 23-04-2016 THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 Gene3D G3DSA:3.40.50.720 2 246 1.3E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PANTHER PTHR24322:SF635 10 138 6.2E-70 T 23-04-2016 THIMO_RS11380 dde5a2018c1e352783d041f99ddf3413 247 PANTHER PTHR24322:SF635 154 186 6.2E-70 T 23-04-2016 THIMO_RS01675 74f1f0ac7f982650a501a8f843f90a54 309 Gene3D G3DSA:3.40.50.10330 21 129 5.1E-9 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS01675 74f1f0ac7f982650a501a8f843f90a54 309 SMART SM00046 3 133 6.7E-9 T 23-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 THIMO_RS01675 74f1f0ac7f982650a501a8f843f90a54 309 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 130 1.1E-23 T 23-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 THIMO_RS01675 74f1f0ac7f982650a501a8f843f90a54 309 PANTHER PTHR12358 3 301 4.6E-20 T 23-04-2016 THIMO_RS01675 74f1f0ac7f982650a501a8f843f90a54 309 SUPERFAMILY SSF111331 1 302 1.57E-55 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 SUPERFAMILY SSF47917 446 525 2.98E-11 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:1.10.1140.10 446 519 1.3E-7 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 208 429 1.2E-85 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 SUPERFAMILY SSF52540 174 430 5.0E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 1 581 42.555 T 23-04-2016 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:3.40.50.300 171 429 9.7E-96 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:3.40.50.300 72 86 9.7E-96 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 PANTHER PTHR15184 178 570 1.2E-198 T 23-04-2016 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 PANTHER PTHR15184 9 108 1.2E-198 T 23-04-2016 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 9 66 7.9E-9 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 PANTHER PTHR15184:SF7 178 570 1.2E-198 T 23-04-2016 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 PANTHER PTHR15184:SF7 9 108 1.2E-198 T 23-04-2016 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 SUPERFAMILY SSF50615 7 70 3.53E-5 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 SMART SM00382 220 413 6.2E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 420 429 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10830 23e89511236ddbaa7b65a98a458cfb67 594 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 85 198 2.4E-15 T 23-04-2016 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PANTHER PTHR24322 11 144 6.6E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PANTHER PTHR24322 160 191 6.6E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.4E-21 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.4E-21 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 4.4E-21 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.4E-21 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 4.4E-21 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 4.4E-21 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 SUPERFAMILY SSF51735 5 247 1.75E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 Pfam PF00106 short chain dehydrogenase 8 198 8.2E-40 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 Gene3D G3DSA:3.40.50.720 6 245 8.0E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15670 e914946593bab1613fdd2edc4e6aaf1d 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 SUPERFAMILY SSF52540 119 256 4.46E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 SMART SM00382 337 504 9.5E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 SMART SM00382 26 223 6.3E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 Pfam PF12848 ABC transporter 217 296 2.0E-26 T 23-04-2016 IPR032781 ABC-transporter extension domain THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 SUPERFAMILY SSF52540 2 84 4.46E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 SUPERFAMILY SSF52540 295 509 3.26E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 Gene3D G3DSA:3.40.50.300 2 274 2.0E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 Gene3D G3DSA:3.40.50.300 311 515 5.9E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 PANTHER PTHR19211:SF49 1 555 1.5E-303 T 23-04-2016 THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 PANTHER PTHR19211 1 555 1.5E-303 T 23-04-2016 THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 Pfam PF00005 ABC transporter 328 459 2.2E-19 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS00485 5026e65edfd4713a2372106c8237893e 631 Pfam PF00005 ABC transporter 17 178 6.3E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS00665 f2e8c5adb541d19f5568af6deac756c6 439 Pfam PF01523 Putative modulator of DNA gyrase 29 299 2.3E-15 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS00665 f2e8c5adb541d19f5568af6deac756c6 439 SUPERFAMILY SSF111283 8 437 7.98E-51 T 23-04-2016 THIMO_RS00665 f2e8c5adb541d19f5568af6deac756c6 439 PANTHER PTHR30624 26 432 2.0E-55 T 23-04-2016 THIMO_RS00665 f2e8c5adb541d19f5568af6deac756c6 439 PANTHER PTHR30624:SF8 26 432 2.0E-55 T 23-04-2016 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:3.50.50.60 346 407 1.8E-97 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:3.50.50.60 3 240 1.8E-97 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF56425 235 350 6.58E-44 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 Pfam PF02910 Fumarate reductase flavoprotein C-term 438 524 6.4E-14 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF51905 353 445 6.76E-72 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF51905 6 252 6.76E-72 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 Pfam PF00890 FAD binding domain 8 389 3.1E-96 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF46977 422 526 5.49E-31 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 PANTHER PTHR11632 7 535 2.0E-252 T 23-04-2016 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:1.20.58.100 424 525 1.2E-31 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:3.90.700.10 241 345 1.3E-39 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 PIRSF PIRSF000171 2 533 1.5E-29 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.7E-7 T 23-04-2016 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 352 374 1.7E-7 T 23-04-2016 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 7 517 3.1E-201 T 23-04-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 THIMO_RS09600 7145b0afa061696ae007a8e1cdc2f4bf 540 PANTHER PTHR11632:SF27 7 535 2.0E-252 T 23-04-2016 THIMO_RS09790 47b60ff6d9cad865a5340357cdf553f3 329 SUPERFAMILY SSF56112 6 328 6.12E-82 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS09790 47b60ff6d9cad865a5340357cdf553f3 329 PANTHER PTHR39573 3 326 4.4E-138 T 23-04-2016 THIMO_RS09790 47b60ff6d9cad865a5340357cdf553f3 329 Pfam PF01636 Phosphotransferase enzyme family 36 257 1.0E-33 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase THIMO_RS09790 47b60ff6d9cad865a5340357cdf553f3 329 Gene3D G3DSA:3.90.1200.10 112 327 4.4E-50 T 23-04-2016 THIMO_RS09790 47b60ff6d9cad865a5340357cdf553f3 329 PANTHER PTHR39573:SF1 3 326 4.4E-138 T 23-04-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 THIMO_RS09790 47b60ff6d9cad865a5340357cdf553f3 329 Hamap MF_01497 Stress response kinase A [srkA]. 5 322 47.114 T 23-04-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 35 62 - T 23-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 Gene3D G3DSA:1.10.8.100 196 257 1.7E-24 T 23-04-2016 IPR023165 rRNA adenine dimethylase-like THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 PANTHER PTHR11727 3 256 9.4E-86 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 Pfam PF00398 Ribosomal RNA adenine dimethylase 4 255 8.4E-53 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 3 258 54.614 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 SUPERFAMILY SSF53335 3 259 8.92E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 SMART SM00650 19 191 9.4E-75 T 23-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 3 256 2.4E-79 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 THIMO_RS13760 fdca39f240861b9319681d84739128a7 262 Gene3D G3DSA:3.40.50.150 3 190 1.8E-62 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS06925 faee2e4894363ece0301d2a2ed60c1c7 242 Pfam PF09335 SNARE associated Golgi protein 79 197 3.2E-10 T 23-04-2016 IPR032816 SNARE associated Golgi protein THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 SUPERFAMILY SSF52540 1 139 2.28E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 SUPERFAMILY SSF52540 1041 1139 2.28E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 PANTHER PTHR41259:SF1 1 697 3.0E-37 T 23-04-2016 THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 PANTHER PTHR41259:SF1 820 1156 3.0E-37 T 23-04-2016 THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 Gene3D G3DSA:3.40.50.300 163 238 1.0E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 Gene3D G3DSA:3.40.50.300 3 113 1.0E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 Gene3D G3DSA:3.40.50.300 491 514 1.0E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 Gene3D G3DSA:3.40.50.300 1048 1138 1.0E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 Pfam PF13514 AAA domain 1 207 1.7E-73 T 23-04-2016 THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 PANTHER PTHR41259 1 697 3.0E-37 T 23-04-2016 THIMO_RS11555 e96182259e1ce23a6271e81658395c89 1158 PANTHER PTHR41259 820 1156 3.0E-37 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.70.1430 38 140 4.1E-34 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.2090.10 181 275 3.4E-29 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.2090.10 720 809 9.3E-29 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82714 721 808 1.28E-24 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.70.1430 566 668 7.5E-36 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82866 805 1027 3.27E-39 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PANTHER PTHR32063:SF13 1 1032 0.0 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:1.10.3850.10 813 1025 4.7E-51 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:1.10.3850.10 279 498 7.1E-58 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 135 182 3.49E-26 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 274 330 3.49E-26 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 38 130 4.45E-26 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82714 182 272 1.01E-22 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 564 668 1.31E-30 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82866 296 497 4.19E-49 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PANTHER PTHR32063 1 1032 0.0 T 23-04-2016 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 Pfam PF00873 AcrB/AcrD/AcrF family 1 1025 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.1E-107 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS04070 2a3c869287852141d42c634842b3eef1 1032 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1029 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 469 3.9E-143 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 PANTHER PTHR22773:SF41 1 477 1.7E-164 T 23-04-2016 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 470 18.275 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.4E-10 T 23-04-2016 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 73 98 3.4E-10 T 23-04-2016 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 413 432 3.4E-10 T 23-04-2016 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 PANTHER PTHR22773 1 477 1.7E-164 T 23-04-2016 THIMO_RS02855 2e47bc34066096ab4382bd6d76e895a8 478 Pfam PF00361 Proton-conducting membrane transporter 125 419 7.6E-78 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 PANTHER PTHR11748:SF92 8 511 9.3E-71 T 23-04-2016 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:3.40.462.10 244 474 2.1E-87 T 23-04-2016 IPR016170 Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain KEGG: 00908+1.5.99.12 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 Pfam PF02913 FAD linked oxidases, C-terminal domain 400 511 2.0E-10 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:1.10.45.10 475 514 1.1E-16 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 Pfam PF01565 FAD binding domain 57 197 2.8E-28 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 PANTHER PTHR11748 8 511 9.3E-71 T 23-04-2016 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:3.30.43.10 5 114 1.5E-34 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 SUPERFAMILY SSF56176 12 241 7.48E-59 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 SUPERFAMILY SSF55103 244 514 3.71E-52 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS12365 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:3.30.465.10 115 241 7.1E-37 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 PANTHER PTHR19241:SF189 204 698 2.2E-86 T 23-04-2016 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 Gene3D G3DSA:3.40.50.300 202 442 3.5E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 SUPERFAMILY SSF49879 118 199 1.38E-26 T 23-04-2016 IPR008984 SMAD/FHA domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 SUPERFAMILY SSF52540 207 441 3.19E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 SUPERFAMILY SSF49879 17 93 2.9E-12 T 23-04-2016 IPR008984 SMAD/FHA domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 SMART SM00382 237 433 1.1E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 Pfam PF00005 ABC transporter 228 378 3.5E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 Gene3D G3DSA:2.60.200.20 4 94 2.9E-10 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 Pfam PF00498 FHA domain 122 184 1.1E-18 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 PANTHER PTHR19241 204 698 2.2E-86 T 23-04-2016 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 ProSitePatterns PS00211 ABC transporters family signature. 350 364 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 Gene3D G3DSA:2.60.200.20 118 192 1.9E-24 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 SMART SM00240 120 170 1.1E-16 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 SMART SM00240 23 72 2.6 T 23-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 THIMO_RS07335 f191e260f7b2a5373238c9ac51be74d9 761 Pfam PF01061 ABC-2 type transporter 507 709 8.3E-19 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 Pfam PF13533 Biotin-lipoyl like 72 116 1.6E-8 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 Pfam PF13437 HlyD family secretion protein 220 276 8.4E-9 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 SUPERFAMILY SSF111369 145 168 3.01E-10 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 SUPERFAMILY SSF111369 57 116 3.01E-10 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 SUPERFAMILY SSF111369 197 278 3.01E-10 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 Gene3D G3DSA:2.40.50.100 218 249 4.0E-12 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 Gene3D G3DSA:2.40.50.100 79 101 4.0E-12 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 PANTHER PTHR30469 7 108 6.8E-31 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 PANTHER PTHR30469 130 419 6.8E-31 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 PANTHER PTHR30469:SF15 130 419 6.8E-31 T 23-04-2016 THIMO_RS02540 4da0aa1ef79c2a44b6795d70f62e67bf 426 PANTHER PTHR30469:SF15 7 108 6.8E-31 T 23-04-2016 THIMO_RS08800 6a4ac7ce2bd0c5b7adc7dd3c24bb867e 187 Gene3D G3DSA:1.20.120.520 2 152 4.1E-21 T 23-04-2016 THIMO_RS08800 6a4ac7ce2bd0c5b7adc7dd3c24bb867e 187 Pfam PF01814 Hemerythrin HHE cation binding domain 5 137 4.1E-13 T 23-04-2016 IPR012312 Haemerythrin-like THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 Gene3D G3DSA:3.40.50.300 5 220 2.8E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 PANTHER PTHR24220:SF218 10 217 2.9E-63 T 23-04-2016 THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 PANTHER PTHR24220 10 217 2.9E-63 T 23-04-2016 THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 SMART SM00382 35 219 2.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 Pfam PF00005 ABC transporter 27 172 1.1E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS00180 8ba0da011e2a58bc705f29dc7db9abfa 249 SUPERFAMILY SSF52540 7 217 1.31E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 23-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PANTHER PTHR11404 1 193 1.7E-106 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.1E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.1E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.1E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.1E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.1E-23 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PIRSF PIRSF000349 1 193 2.5E-84 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 Gene3D G3DSA:1.10.287.990 20 82 4.9E-25 T 23-04-2016 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 SUPERFAMILY SSF54719 82 192 8.51E-44 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 PANTHER PTHR11404:SF8 1 193 1.7E-106 T 23-04-2016 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 SUPERFAMILY SSF46609 1 83 8.38E-37 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 2.9E-34 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS15890 e8c333db1250d31ac6b9b90a488853ed 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 4.6E-41 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS00800 c8a0f0a20e327d7846c803bed48b361b 268 Gene3D G3DSA:3.40.50.300 29 187 2.8E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00800 c8a0f0a20e327d7846c803bed48b361b 268 Pfam PF07728 AAA domain (dynein-related subfamily) 36 170 3.6E-31 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 THIMO_RS00800 c8a0f0a20e327d7846c803bed48b361b 268 SUPERFAMILY SSF52540 32 232 2.18E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00800 c8a0f0a20e327d7846c803bed48b361b 268 PANTHER PTHR22908 15 260 4.1E-35 T 23-04-2016 THIMO_RS00800 c8a0f0a20e327d7846c803bed48b361b 268 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 183 266 3.0E-34 T 23-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal THIMO_RS12055 b9e2941100ad59fc1777c91a72f7d1c6 410 Pfam PF02687 FtsX-like permease family 276 403 4.1E-17 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS12055 b9e2941100ad59fc1777c91a72f7d1c6 410 PANTHER PTHR30489 10 410 8.1E-48 T 23-04-2016 THIMO_RS12055 b9e2941100ad59fc1777c91a72f7d1c6 410 Pfam PF12704 MacB-like periplasmic core domain 23 242 1.6E-14 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 Pfam PF00994 Probable molybdopterin binding domain 16 159 5.8E-34 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 PANTHER PTHR10192:SF18 6 166 1.1E-84 T 23-04-2016 THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 10 170 1.1E-81 T 23-04-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 153 9.4E-35 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 PANTHER PTHR10192 6 166 1.1E-84 T 23-04-2016 THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 PIRSF PIRSF006443 1 168 1.7E-63 T 23-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 SUPERFAMILY SSF53218 10 170 1.44E-47 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 SMART SM00852 16 160 2.1E-32 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08025 604aa1300d0ab3f831db78d7449aa86f 176 Gene3D G3DSA:3.40.980.10 12 161 3.4E-51 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 Gene3D G3DSA:3.30.420.130 385 501 1.8E-30 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 PANTHER PTHR11228 45 422 1.1E-108 T 23-04-2016 THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 SUPERFAMILY SSF102114 52 269 7.72E-36 T 23-04-2016 THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 PANTHER PTHR11228:SF18 45 422 1.1E-108 T 23-04-2016 THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 37 496 9.1E-193 T 23-04-2016 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 Pfam PF04055 Radical SAM superfamily 64 243 1.0E-25 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 SUPERFAMILY SSF53146 386 499 1.19E-26 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 398 494 4.5E-19 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 Gene3D G3DSA:3.20.20.70 54 317 1.0E-42 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 ProSitePatterns PS00267 Tachykinin family signature. 268 273 - T 23-04-2016 IPR013055 Tachykinin/Neurokinin-like, conserved site THIMO_RS15455 738a6da61345dfaea45b277eca778d10 516 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 64 75 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 PANTHER PTHR11921 54 459 1.7E-66 T 23-04-2016 THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 PANTHER PTHR11921:SF24 54 459 1.7E-66 T 23-04-2016 THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 SUPERFAMILY SSF46548 60 169 2.27E-18 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 Pfam PF02754 Cysteine-rich domain 345 433 8.2E-13 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 Pfam PF13183 4Fe-4S dicluster domain 69 154 3.9E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS03725 a7a858a55aed38ced892e45a8f661313 470 Gene3D G3DSA:1.10.1060.10 57 170 2.3E-19 T 23-04-2016 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF04898 Glutamate synthase central domain 468 754 1.8E-109 T 23-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:2.160.20.60 1240 1535 6.6E-104 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:3.20.20.70 850 1225 2.1E-184 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:3.20.20.70 457 804 6.4E-107 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF01645 Conserved region in glutamate synthase 817 1186 3.9E-158 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF69336 1235 1452 6.93E-91 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF69336 1481 1529 6.93E-91 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF00310 Glutamine amidotransferases class-II 22 440 1.5E-186 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF56235 22 443 9.17E-159 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF01493 GXGXG motif 1266 1453 2.0E-81 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 PANTHER PTHR11938:SF1 11 1452 0.0 T 23-04-2016 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 PANTHER PTHR11938:SF1 1481 1532 0.0 T 23-04-2016 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 PANTHER PTHR11938 11 1452 0.0 T 23-04-2016 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 PANTHER PTHR11938 1481 1532 0.0 T 23-04-2016 THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:3.60.20.10 22 451 4.4E-191 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS00425 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF51395 455 1223 7.79E-266 T 23-04-2016 THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 PANTHER PTHR30627:SF1 9 576 3.4E-199 T 23-04-2016 THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 SUPERFAMILY SSF56519 64 235 5.76E-42 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 Gene3D G3DSA:3.40.710.10 243 566 5.9E-86 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 68 221 9.9E-17 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 PANTHER PTHR30627 9 576 3.4E-199 T 23-04-2016 THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 Gene3D G3DSA:3.90.1310.10 147 242 1.3E-25 T 23-04-2016 THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 SUPERFAMILY SSF56601 187 575 2.32E-92 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS14810 06cada2cb6346a95e1cf463a447c0c34 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 261 560 2.7E-71 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 THIMO_RS06820 22755e8fee4d6b46488f315df64c6e1a 420 PANTHER PTHR33498:SF1 1 408 3.4E-40 T 23-04-2016 THIMO_RS06820 22755e8fee4d6b46488f315df64c6e1a 420 Pfam PF01610 Transposase 159 383 3.2E-57 T 23-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain THIMO_RS06820 22755e8fee4d6b46488f315df64c6e1a 420 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 43 88 1.7E-13 T 23-04-2016 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger THIMO_RS06820 22755e8fee4d6b46488f315df64c6e1a 420 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 94 144 2.0E-17 T 23-04-2016 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain THIMO_RS06820 22755e8fee4d6b46488f315df64c6e1a 420 PANTHER PTHR33498 1 408 3.4E-40 T 23-04-2016 THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 PANTHER PTHR10000:SF10 3 211 2.9E-56 T 23-04-2016 THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 7.0E-22 T 23-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 7.8E-39 T 23-04-2016 THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 Gene3D G3DSA:3.40.50.1000 82 217 2.0E-48 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 Gene3D G3DSA:1.20.1440.100 15 81 6.8E-29 T 23-04-2016 THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 SUPERFAMILY SSF56784 3 208 2.76E-34 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 2.9E-43 T 23-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial THIMO_RS06990 3c0a8067808ebc7f1559b20a0365c0aa 222 PANTHER PTHR10000 3 211 2.9E-56 T 23-04-2016 THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 PIRSF PIRSF000390 2 364 4.2E-109 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 Gene3D G3DSA:3.40.640.10 7 239 6.2E-85 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 15 358 4.6E-124 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 PANTHER PTHR30244 14 356 7.3E-114 T 23-04-2016 THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 Gene3D G3DSA:3.90.1150.10 242 363 2.8E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 SUPERFAMILY SSF53383 6 362 1.88E-115 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS08915 c137dbe98c451ef837e0c7bbd298b0a0 364 PANTHER PTHR30244:SF15 14 356 7.3E-114 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 SUPERFAMILY SSF53686 1 456 1.7E-158 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 Gene3D G3DSA:3.90.1380.10 1 85 1.4E-25 T 23-04-2016 IPR029144 Threonine synthase, N-terminal THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 TIGRFAM TIGR00260 thrC: threonine synthase 69 419 6.9E-87 T 23-04-2016 IPR004450 Threonine synthase-like THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 Pfam PF14821 Threonine synthase N terminus 3 80 5.4E-26 T 23-04-2016 IPR029144 Threonine synthase, N-terminal THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 PANTHER PTHR10314:SF1 362 454 4.9E-161 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 PANTHER PTHR10314:SF1 53 330 4.9E-161 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 PANTHER PTHR10314:SF1 25 36 4.9E-161 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 Gene3D G3DSA:3.40.50.1100 202 430 3.6E-92 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 Gene3D G3DSA:3.40.50.1100 129 201 2.8E-6 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 PANTHER PTHR10314 362 454 4.9E-161 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 PANTHER PTHR10314 53 330 4.9E-161 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 PANTHER PTHR10314 25 36 4.9E-161 T 23-04-2016 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 101 115 - T 23-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 THIMO_RS06205 7f782186fbde478a697275ee5d5d235a 462 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 101 395 2.1E-18 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 Pfam PF13183 4Fe-4S dicluster domain 21 86 6.1E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 74 85 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 SUPERFAMILY SSF54862 20 100 7.53E-17 T 23-04-2016 THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 PIRSF PIRSF000139 8 408 1.7E-79 T 23-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 23 34 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 PANTHER PTHR32479:SF2 12 392 1.0E-57 T 23-04-2016 THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 Gene3D G3DSA:1.10.1060.10 20 102 5.1E-16 T 23-04-2016 THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 PANTHER PTHR32479 12 392 1.0E-57 T 23-04-2016 THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 Pfam PF02754 Cysteine-rich domain 295 380 1.4E-13 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS05655 21ebe2978925ca0eb9b48d1601a2f29f 419 Pfam PF02754 Cysteine-rich domain 184 260 2.9E-5 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 PANTHER PTHR32119:SF2 5 231 1.3E-103 T 23-04-2016 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 9 227 1.2E-58 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 5 232 39.386 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 PANTHER PTHR32119 5 231 1.3E-103 T 23-04-2016 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 SMART SM00934 7 227 3.4E-95 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 59 72 - T 23-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 7 226 1.8E-49 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 SUPERFAMILY SSF51366 6 230 2.64E-74 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS08170 256d75386eee0bf20c250a87925dac12 233 Gene3D G3DSA:3.20.20.70 6 231 7.4E-87 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 Pfam PF02811 PHP domain 6 90 3.1E-8 T 23-04-2016 IPR004013 PHP domain GO:0003824 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 SUPERFAMILY SSF89550 6 83 1.16E-50 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 SUPERFAMILY SSF89550 165 278 1.16E-50 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 PANTHER PTHR30007:SF4 6 278 8.4E-74 T 23-04-2016 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 SMART SM00481 5 70 8.3E-19 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 PANTHER PTHR30007 6 278 8.4E-74 T 23-04-2016 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 Gene3D G3DSA:3.20.20.140 157 260 2.6E-38 T 23-04-2016 THIMO_RS04630 130b26211931e47001bcd32737da3670 289 Gene3D G3DSA:3.20.20.140 6 88 2.6E-38 T 23-04-2016 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 9 474 94.929 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 PANTHER PTHR11895:SF7 1 480 8.4E-228 T 23-04-2016 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 Pfam PF01425 Amidase 22 463 7.6E-164 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 PANTHER PTHR11895 1 480 8.4E-228 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 SUPERFAMILY SSF75304 2 480 7.06E-171 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 Gene3D G3DSA:3.90.1300.10 2 479 9.0E-187 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 13 474 2.8E-182 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS13270 a61ac6e89bc53f2102e1bed8c85b799c 484 ProSitePatterns PS00571 Amidases signature. 149 180 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 THIMO_RS00600 da8137a64461ff8d9231c3c6a7f567ab 284 SMART SM00014 103 213 2.7E-9 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS00600 da8137a64461ff8d9231c3c6a7f567ab 284 PANTHER PTHR14969 59 247 1.5E-14 T 23-04-2016 THIMO_RS00600 da8137a64461ff8d9231c3c6a7f567ab 284 Gene3D G3DSA:1.20.144.10 69 220 1.4E-25 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS00600 da8137a64461ff8d9231c3c6a7f567ab 284 SUPERFAMILY SSF48317 58 219 9.55E-28 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS00600 da8137a64461ff8d9231c3c6a7f567ab 284 Pfam PF01569 PAP2 superfamily 102 218 2.6E-20 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 PANTHER PTHR36451 69 393 1.9E-17 T 23-04-2016 THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 PANTHER PTHR36451:SF1 69 393 1.9E-17 T 23-04-2016 THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 Gene3D G3DSA:3.40.50.300 201 384 2.5E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 Gene3D G3DSA:3.40.50.300 75 127 2.5E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 Pfam PF13469 Sulfotransferase family 75 334 5.4E-23 T 23-04-2016 THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 SUPERFAMILY SSF52540 191 357 1.37E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06940 8110fbe0599e8bfae83add89a5a468f2 418 SUPERFAMILY SSF52540 71 110 1.37E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Pfam PF00120 Glutamine synthetase, catalytic domain 101 465 1.9E-135 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 467 9.5E-201 T 23-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 258 273 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 385 397 - T 23-04-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 13 94 4.8E-30 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 PANTHER PTHR20852:SF15 155 468 1.7E-258 T 23-04-2016 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 PANTHER PTHR20852:SF15 4 137 1.7E-258 T 23-04-2016 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 SUPERFAMILY SSF54368 3 99 6.41E-35 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Gene3D G3DSA:3.30.590.10 105 454 1.2E-135 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 23-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 SMART SM01230 101 378 4.8E-145 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Gene3D G3DSA:3.10.20.70 4 104 6.3E-39 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 SUPERFAMILY SSF55931 101 467 4.81E-136 T 23-04-2016 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 PANTHER PTHR20852 155 468 1.7E-258 T 23-04-2016 THIMO_RS17495 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 PANTHER PTHR20852 4 137 1.7E-258 T 23-04-2016 THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 SMART SM00962 187 378 1.2E-45 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 SUPERFAMILY SSF52540 183 367 1.52E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 Gene3D G3DSA:3.40.50.300 199 374 1.5E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 SMART SM00382 186 329 3.6E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 PANTHER PTHR11564 162 397 8.5E-64 T 23-04-2016 THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 275 3.1E-67 T 23-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 Pfam PF00448 SRP54-type protein, GTPase domain 189 374 1.0E-32 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 PANTHER PTHR11564:SF3 162 397 8.5E-64 T 23-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 THIMO_RS01370 dd90889c44fb62f298529e14251f6cdd 403 Gene3D G3DSA:1.20.120.140 148 198 1.6E-5 T 23-04-2016 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PANTHER PTHR30302:SF1 13 179 3.2E-48 T 23-04-2016 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PRINTS PR00446 Hydrogen uptake protein signature 82 98 4.2E-16 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PRINTS PR00446 Hydrogen uptake protein signature 50 67 4.2E-16 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PRINTS PR00446 Hydrogen uptake protein signature 30 41 4.2E-16 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PRINTS PR00446 Hydrogen uptake protein signature 71 81 4.2E-16 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PRINTS PR00446 Hydrogen uptake protein signature 18 30 4.2E-16 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 19 162 3.6E-40 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 Pfam PF01750 Hydrogenase maturation protease 35 161 2.3E-25 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 PANTHER PTHR30302 13 179 3.2E-48 T 23-04-2016 THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 Gene3D G3DSA:3.40.50.1450 17 172 1.9E-48 T 23-04-2016 IPR023430 Peptidase HybD-like domain THIMO_RS11660 e18e1c2bca95e436371683110d51b767 186 SUPERFAMILY SSF53163 17 172 2.01E-41 T 23-04-2016 IPR023430 Peptidase HybD-like domain THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 PANTHER PTHR11609 1 165 6.6E-93 T 23-04-2016 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 SMART SM01001 4 153 8.4E-97 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 6 157 33.661 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 SUPERFAMILY SSF52255 4 161 5.23E-66 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 Gene3D G3DSA:3.40.50.7700 2 161 3.9E-74 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 PANTHER PTHR11609:SF5 1 165 6.6E-93 T 23-04-2016 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 6 160 4.1E-66 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 PIRSF PIRSF001338 1 164 2.0E-70 T 23-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 THIMO_RS03305 5b8978287be85086b8637a5af857b2b7 166 Pfam PF00731 AIR carboxylase 6 150 1.4E-66 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 THIMO_RS06800 6567ddaf22aaab6e3fb0e211688004a0 348 SUPERFAMILY SSF53756 2 322 1.05E-56 T 23-04-2016 THIMO_RS06800 6567ddaf22aaab6e3fb0e211688004a0 348 PANTHER PTHR12526 87 306 1.6E-40 T 23-04-2016 THIMO_RS06800 6567ddaf22aaab6e3fb0e211688004a0 348 Pfam PF00534 Glycosyl transferases group 1 170 310 3.5E-29 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS06800 6567ddaf22aaab6e3fb0e211688004a0 348 Gene3D G3DSA:3.40.50.2000 170 313 1.9E-23 T 23-04-2016 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 Gene3D G3DSA:3.40.190.10 119 196 9.7E-20 T 23-04-2016 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 Pfam PF13531 Bacterial extracellular solute-binding protein 21 234 2.2E-29 T 23-04-2016 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 SUPERFAMILY SSF53850 20 234 7.25E-41 T 23-04-2016 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 29 234 8.2E-24 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 Gene3D G3DSA:3.40.190.10 23 118 2.0E-7 T 23-04-2016 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 Gene3D G3DSA:3.40.190.10 197 234 2.0E-7 T 23-04-2016 THIMO_RS15120 1a6f282a49ca73eeb7773a76be447520 235 PANTHER PTHR30632 1 234 1.5E-18 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.40 896 1067 2.3E-35 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF53335 324 516 2.82E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:1.10.287.130 1333 1389 1.3E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF13596 PAS domain 784 889 4.8E-23 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PANTHER PTHR24422:SF6 149 902 4.1E-214 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF00072 Response regulator receiver domain 1731 1840 3.2E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF00072 Response regulator receiver domain 1597 1711 1.8E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF52172 1595 1716 2.56E-35 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.180 56 242 5.5E-61 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55874 1393 1562 1.57E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF52738 58 242 8.11E-53 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 392 408 1.9E-22 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 477 500 1.9E-22 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 317 329 1.9E-22 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 356 376 1.9E-22 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 458 472 1.9E-22 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55781 922 1060 1.02E-16 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00086 849 891 290.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00086 1274 1319 0.0088 T 23-04-2016 IPR001610 PAC motif THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00086 1144 1185 85.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1452 1562 4.8E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00388 1339 1404 5.8E-24 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55785 1182 1317 1.42E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00138 258 518 2.0E-79 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1069 1192 4.6E-13 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1194 1326 4.5E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF47384 1324 1405 1.39E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF01590 GAF domain 922 1056 1.2E-7 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF01339 CheB methylesterase 61 236 9.5E-54 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00387 1451 1564 1.5E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55785 1060 1183 2.39E-19 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF03705 CheR methyltransferase, all-alpha domain 260 311 1.0E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.20 1183 1332 6.3E-26 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:1.10.155.10 258 321 7.5E-15 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.20 1068 1182 6.0E-19 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.20 776 889 1.2E-7 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.150 323 518 1.7E-56 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1339 1404 1.1E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.565.10 1390 1562 5.3E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF08448 PAS fold 1079 1186 3.6E-16 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 PANTHER PTHR24422 149 902 4.1E-214 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55785 776 889 2.27E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00448 1729 1840 1.1E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00448 1595 1711 9.8E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF01739 CheR methyltransferase, SAM binding domain 325 512 2.2E-49 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF47757 256 326 4.71E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.2300 1594 1717 2.5E-37 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.2300 1728 1841 8.7E-23 T 23-04-2016 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF08447 PAS fold 1219 1301 1.5E-10 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00065 920 1068 3.7E-8 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00091 782 847 5.9 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00091 1197 1266 2.8 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00091 1072 1138 8.5E-5 T 23-04-2016 IPR000014 PAS domain THIMO_RS18280 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF52172 1730 1843 2.85E-25 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS10670 d6d850f887617b80adde6ee80eb28df2 210 PIRSF PIRSF009320 1 209 5.8E-36 T 23-04-2016 THIMO_RS10670 d6d850f887617b80adde6ee80eb28df2 210 SUPERFAMILY SSF52540 2 207 5.13E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10670 d6d850f887617b80adde6ee80eb28df2 210 PANTHER PTHR13696 1 204 4.2E-27 T 23-04-2016 THIMO_RS10670 d6d850f887617b80adde6ee80eb28df2 210 Gene3D G3DSA:3.40.50.300 1 205 2.0E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10670 d6d850f887617b80adde6ee80eb28df2 210 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 150 3.4E-21 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 PANTHER PTHR30307:SF0 2 341 9.3E-159 T 23-04-2016 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 338 44.812 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 337 1.5E-122 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 Gene3D G3DSA:3.40.1780.10 176 337 9.5E-96 T 23-04-2016 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 Gene3D G3DSA:3.40.1780.10 3 62 9.5E-96 T 23-04-2016 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 PANTHER PTHR30307 2 341 9.3E-159 T 23-04-2016 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 Pfam PF02547 Queuosine biosynthesis protein 4 337 5.3E-126 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 Gene3D G3DSA:2.40.10.240 65 123 1.6E-10 T 23-04-2016 THIMO_RS05025 379457f370a16759b8cb982ddc93bc73 341 SUPERFAMILY SSF111337 5 337 9.55E-127 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS00720 1667547a251517a9589215398aae899f 243 SUPERFAMILY SSF103501 61 233 3.66E-45 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS00720 1667547a251517a9589215398aae899f 243 SUPERFAMILY SSF103501 7 26 3.66E-45 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS00720 1667547a251517a9589215398aae899f 243 Pfam PF02665 Nitrate reductase gamma subunit 70 212 3.8E-12 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS00720 1667547a251517a9589215398aae899f 243 Gene3D G3DSA:1.20.950.20 7 221 5.4E-37 T 23-04-2016 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 Pfam PF13488 Glycine zipper 37 82 6.2E-11 T 23-04-2016 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 Gene3D G3DSA:3.30.1330.60 106 218 1.4E-37 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 Pfam PF00691 OmpA family 118 212 1.5E-21 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PRINTS PR01021 OMPA domain signature 163 179 5.0E-13 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PRINTS PR01021 OMPA domain signature 148 163 5.0E-13 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PRINTS PR01021 OMPA domain signature 118 140 5.0E-13 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 ProSitePatterns PS01068 OmpA-like domain. 150 194 - T 23-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PANTHER PTHR30128 57 221 7.2E-40 T 23-04-2016 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 181 200 7.0E-7 T 23-04-2016 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 163 180 7.0E-7 T 23-04-2016 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 201 221 7.0E-7 T 23-04-2016 THIMO_RS13430 14f27f3e644ae16e22d7102b7eaae5ba 224 SUPERFAMILY SSF103088 106 221 2.49E-36 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 PANTHER PTHR30002:SF4 16 356 2.6E-164 T 23-04-2016 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 SUPERFAMILY SSF46548 150 267 4.08E-19 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 24 356 2.8E-150 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 17 326 50.048 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 PANTHER PTHR30002 16 356 2.6E-164 T 23-04-2016 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 Pfam PF13484 4Fe-4S double cluster binding domain 203 267 8.5E-19 T 23-04-2016 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 204 215 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 Pfam PF08331 Domain of unknown function (DUF1730) 72 151 6.3E-24 T 23-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS08625 f6e693329885c35297ab7a1ac6ee3803 366 Gene3D G3DSA:3.30.70.20 201 268 5.1E-7 T 23-04-2016 THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 TIGRFAM TIGR01933 hflK: HflK protein 79 340 7.0E-98 T 23-04-2016 IPR010201 HflK GO:0016021 THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 SMART SM00244 77 238 3.3E-29 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 Pfam PF01145 SPFH domain / Band 7 family 81 254 1.8E-24 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 PANTHER PTHR10264:SF51 1 375 1.2E-132 T 23-04-2016 IPR010201 HflK GO:0016021 THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 SUPERFAMILY SSF117892 112 245 3.14E-20 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 PANTHER PTHR10264 1 375 1.2E-132 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS11430 ef2a406897de12f71e16eef8d760e003 386 Pfam PF12221 Bacterial membrane protein N terminal 1 44 5.0E-18 T 23-04-2016 IPR020980 Menbrane protein HflK, N-terminal THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 PANTHER PTHR30435 293 415 3.9E-89 T 23-04-2016 THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 PANTHER PTHR30435 1 120 3.9E-89 T 23-04-2016 THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 397 1.3E-98 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 SUPERFAMILY SSF117143 77 376 9.68E-72 T 23-04-2016 THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 337 414 1.6E-20 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 PANTHER PTHR30435:SF1 1 120 3.9E-89 T 23-04-2016 THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 PANTHER PTHR30435:SF1 293 415 3.9E-89 T 23-04-2016 THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 Pfam PF07559 Flagellar basal body protein FlaE 181 296 4.3E-21 T 23-04-2016 IPR011491 Flagellar hook protein FlgE THIMO_RS16645 14717268b1c39ec3c19154f5a1628b95 415 Pfam PF00460 Flagella basal body rod protein 2 32 5.0E-8 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:3.40.50.1980 284 438 2.2E-35 T 23-04-2016 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:3.40.50.1980 159 263 9.4E-14 T 23-04-2016 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 PIRSF PIRSF000163 1 521 2.2E-211 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 13 413 7.5E-81 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 PANTHER PTHR33712 1 521 2.9E-128 T 23-04-2016 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 472 516 1.0E-19 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 SUPERFAMILY SSF53807 3 432 1.83E-108 T 23-04-2016 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 TIGRFAM TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit 1 519 8.9E-185 T 23-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 PANTHER PTHR33712:SF5 1 521 2.9E-128 T 23-04-2016 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:3.40.50.1980 13 147 6.7E-17 T 23-04-2016 THIMO_RS14390 65e991514bfe8cde849df10543518823 521 Hamap MF_00353 Light-independent protochlorophyllide reductase subunit B [bchB]. 1 520 51.643 T 23-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS15100 982ad916ada77d85d19e9f30e2639584 218 Gene3D G3DSA:2.40.440.10 71 193 4.2E-4 T 23-04-2016 THIMO_RS07865 ecb408d71317d864a0b16121d3c587a7 250 Gene3D G3DSA:3.40.1390.30 109 217 7.9E-23 T 23-04-2016 THIMO_RS07865 ecb408d71317d864a0b16121d3c587a7 250 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 7 241 3.7E-45 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 THIMO_RS07865 ecb408d71317d864a0b16121d3c587a7 250 Gene3D G3DSA:3.40.1390.30 4 108 1.1E-32 T 23-04-2016 THIMO_RS07865 ecb408d71317d864a0b16121d3c587a7 250 SUPERFAMILY SSF102705 3 249 9.03E-69 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 THIMO_RS07865 ecb408d71317d864a0b16121d3c587a7 250 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 238 2.0E-49 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 THIMO_RS07865 ecb408d71317d864a0b16121d3c587a7 250 PANTHER PTHR13799 1 247 3.7E-58 T 23-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 THIMO_RS15125 6de8f8fabce64227e8ce5e94948fdb6d 352 Pfam PF01497 Periplasmic binding protein 109 290 2.0E-11 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 THIMO_RS15125 6de8f8fabce64227e8ce5e94948fdb6d 352 Gene3D G3DSA:3.40.50.1980 173 326 3.0E-27 T 23-04-2016 THIMO_RS15125 6de8f8fabce64227e8ce5e94948fdb6d 352 Gene3D G3DSA:3.40.50.1980 50 172 3.4E-10 T 23-04-2016 THIMO_RS15125 6de8f8fabce64227e8ce5e94948fdb6d 352 PANTHER PTHR30535:SF16 24 350 3.3E-41 T 23-04-2016 THIMO_RS15125 6de8f8fabce64227e8ce5e94948fdb6d 352 PANTHER PTHR30535 24 350 3.3E-41 T 23-04-2016 THIMO_RS15125 6de8f8fabce64227e8ce5e94948fdb6d 352 SUPERFAMILY SSF53807 36 348 8.24E-47 T 23-04-2016 THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 4.3E-6 T 23-04-2016 THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 4.1E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.1E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 4.1E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 4.1E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.1E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.1E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 SUPERFAMILY SSF51735 3 239 1.77E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PANTHER PTHR24322 147 179 8.4E-65 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PANTHER PTHR24322 7 131 8.4E-65 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 Gene3D G3DSA:3.40.50.720 3 239 2.0E-85 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PANTHER PTHR24322:SF559 147 179 8.4E-65 T 23-04-2016 THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 PANTHER PTHR24322:SF559 7 131 8.4E-65 T 23-04-2016 THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 236 1.8E-65 T 23-04-2016 THIMO_RS10995 7d749a15d721b4b61269906de8b953cd 240 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 239 2.7E-106 T 23-04-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 THIMO_RS08090 a98b6ac1877dd94212f28bd2afe0ff34 155 Gene3D G3DSA:2.40.320.10 1 151 6.3E-55 T 23-04-2016 IPR023577 CYTH domain THIMO_RS08090 a98b6ac1877dd94212f28bd2afe0ff34 155 Pfam PF01928 CYTH domain 2 135 6.5E-15 T 23-04-2016 IPR023577 CYTH domain THIMO_RS08090 a98b6ac1877dd94212f28bd2afe0ff34 155 SMART SM01118 2 149 1.8E-23 T 23-04-2016 IPR023577 CYTH domain THIMO_RS08090 a98b6ac1877dd94212f28bd2afe0ff34 155 PANTHER PTHR40114 2 155 2.0E-43 T 23-04-2016 THIMO_RS08090 a98b6ac1877dd94212f28bd2afe0ff34 155 SUPERFAMILY SSF55154 1 149 2.78E-42 T 23-04-2016 IPR033469 CYTH-like domain THIMO_RS08090 a98b6ac1877dd94212f28bd2afe0ff34 155 PIRSF PIRSF016487 1 155 1.2E-58 T 23-04-2016 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like THIMO_RS10390 9826ee79102bebd431c186abe74abbf4 131 PANTHER PTHR39624:SF1 7 127 2.5E-23 T 23-04-2016 THIMO_RS10390 9826ee79102bebd431c186abe74abbf4 131 Gene3D G3DSA:3.30.300.20 11 128 6.0E-19 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS10390 9826ee79102bebd431c186abe74abbf4 131 SUPERFAMILY SSF82784 6 128 1.57E-19 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS10390 9826ee79102bebd431c186abe74abbf4 131 PANTHER PTHR39624 7 127 2.5E-23 T 23-04-2016 THIMO_RS10390 9826ee79102bebd431c186abe74abbf4 131 Pfam PF02566 OsmC-like protein 34 126 9.1E-11 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS00940 fc78498d88872cdcebf421ce68cb1b59 415 Pfam PF02687 FtsX-like permease family 275 408 5.4E-20 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS00940 fc78498d88872cdcebf421ce68cb1b59 415 Pfam PF12704 MacB-like periplasmic core domain 27 242 5.6E-19 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS00940 fc78498d88872cdcebf421ce68cb1b59 415 PANTHER PTHR30489:SF8 1 415 3.4E-120 T 23-04-2016 THIMO_RS00940 fc78498d88872cdcebf421ce68cb1b59 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 415 7.3E-154 T 23-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 THIMO_RS00940 fc78498d88872cdcebf421ce68cb1b59 415 PANTHER PTHR30489 1 415 3.4E-120 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 Gene3D G3DSA:3.30.200.20 12 99 3.9E-16 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 SMART SM00220 17 290 3.8E-15 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 Gene3D G3DSA:1.10.510.10 100 284 6.3E-27 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 PANTHER PTHR24362:SF160 12 57 2.0E-44 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 PANTHER PTHR24362:SF160 75 310 2.0E-44 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 PANTHER PTHR24362 12 57 2.0E-44 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 PANTHER PTHR24362 75 310 2.0E-44 T 23-04-2016 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 SUPERFAMILY SSF56112 78 299 5.45E-47 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 SUPERFAMILY SSF56112 12 51 5.45E-47 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 23 46 - T 23-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 THIMO_RS03615 25c24cdf0ddb1e9ed13b3d3969209047 316 Pfam PF00069 Protein kinase domain 17 243 3.5E-27 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 Gene3D G3DSA:1.10.8.10 6 90 2.9E-19 T 23-04-2016 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 29 278 3.0E-77 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 Gene3D G3DSA:3.40.50.150 92 282 2.7E-61 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 SUPERFAMILY SSF53335 10 281 2.45E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 PANTHER PTHR18895:SF64 26 282 4.5E-81 T 23-04-2016 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 Pfam PF05175 Methyltransferase small domain 107 197 2.7E-13 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 PANTHER PTHR18895 26 282 4.5E-81 T 23-04-2016 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 7 282 38.109 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 THIMO_RS14865 5039d85f243c27cb465e4ea5f665d159 287 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 25 281 5.3E-62 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 4.0E-122 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PANTHER PTHR30531:SF4 1 361 1.1E-141 T 23-04-2016 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 Gene3D G3DSA:3.40.1690.10 218 355 2.2E-59 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 352 2.9E-119 T 23-04-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 2.4E-40 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 2.4E-40 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 2.4E-40 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 2.4E-40 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 2.4E-40 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 SUPERFAMILY SSF160544 244 351 7.46E-39 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal THIMO_RS01360 1b3cbe60cd2e6a91d937f302cad6770d 378 PANTHER PTHR30531 1 361 1.1E-141 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.30.390.30 345 459 9.2E-30 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 SUPERFAMILY SSF55424 345 462 2.06E-27 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 SUPERFAMILY SSF51905 6 322 3.43E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.50.50.60 152 267 3.8E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 456 3.4E-26 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PIRSF PIRSF000350 1 462 4.9E-62 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 1.3E-27 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 1.3E-27 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.3E-27 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 1.3E-27 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.3E-27 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PANTHER PTHR22912 7 460 1.0E-239 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 3.9E-47 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 PANTHER PTHR22912:SF93 7 460 1.0E-239 T 23-04-2016 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.50.50.60 269 336 8.8E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.50.50.60 6 149 8.8E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS09850 4474091c1ba368e9280c1f33957d4f87 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 325 4.1E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 SUPERFAMILY SSF52540 198 362 9.37E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.2E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.2E-8 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 Gene3D G3DSA:3.40.50.300 198 362 4.0E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.015 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.2E-29 T 23-04-2016 IPR025121 GTPase HflX, N-terminal THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 PANTHER PTHR10229:SF0 1 437 3.1E-162 T 23-04-2016 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 360 1.3E-145 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 PANTHER PTHR10229 1 437 3.1E-162 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 2.2E-27 T 23-04-2016 IPR032305 GTP-binding protein, middle domain THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 Pfam PF01926 50S ribosome-binding GTPase 200 318 2.3E-18 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS11435 de2c4c33da3ee5ee8d91542735933cd8 445 PIRSF PIRSF006809 3 422 1.5E-142 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 SMART SM00843 770 835 6.8E-39 T 23-04-2016 IPR018541 FtsK gamma domain THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 17 191 1.1E-38 T 23-04-2016 IPR025199 DNA translocase FtsK, 4TM region THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 Gene3D G3DSA:3.40.50.300 422 587 1.4E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 Gene3D G3DSA:3.40.50.300 619 733 1.4E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 SUPERFAMILY SSF46785 771 835 1.5E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 PANTHER PTHR22683:SF41 341 834 8.2E-258 T 23-04-2016 THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 Pfam PF01580 FtsK/SpoIIIE family 448 666 2.0E-66 T 23-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 PANTHER PTHR22683 341 834 8.2E-258 T 23-04-2016 THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 SUPERFAMILY SSF52540 421 738 6.27E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 SMART SM00382 483 699 0.0079 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS11695 5190088a2b4c66772f063c0d2be3275e 839 Pfam PF09397 Ftsk gamma domain 771 832 1.9E-27 T 23-04-2016 IPR018541 FtsK gamma domain THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:2.20.25.90 12 68 9.1E-8 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 PANTHER PTHR11601 621 1115 3.8E-148 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.90.1150.10 997 1119 3.5E-40 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Pfam PF00266 Aminotransferase class-V 753 1113 2.2E-76 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 SMART SM00926 11 64 2.6E-7 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.228.10 154 344 8.4E-65 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Pfam PF01568 Molydopterin dinucleotide binding domain 609 715 2.2E-21 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:2.40.40.20 560 723 9.1E-32 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Pfam PF00384 Molybdopterin oxidoreductase 67 497 8.5E-60 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 PANTHER PTHR11601:SF20 621 1115 3.8E-148 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 SUPERFAMILY SSF53706 15 603 2.49E-142 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 SUPERFAMILY SSF50692 563 722 6.33E-35 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.50.740 345 559 3.7E-33 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.50.740 69 118 6.9E-12 T 23-04-2016 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 SUPERFAMILY SSF53383 752 1121 4.87E-105 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 640 667 - T 23-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 THIMO_RS10400 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.640.10 766 996 1.7E-88 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PANTHER PTHR30013 1 362 1.5E-149 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 SUPERFAMILY SSF56770 47 310 2.35E-81 T 23-04-2016 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 228 307 4.6E-31 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 320 2.3E-124 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PIRSF PIRSF000310 5 356 1.4E-133 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PANTHER PTHR30013:SF7 1 362 1.5E-149 T 23-04-2016 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 208 2.7E-30 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 39 1.1E-5 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Gene3D G3DSA:3.40.50.700 50 227 8.7E-52 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 233 251 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 257 283 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 160 184 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 285 298 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 215 232 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 189 212 9.4E-72 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15920 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Gene3D G3DSA:4.10.480.10 228 310 2.7E-35 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 Gene3D G3DSA:3.30.470.20 173 276 2.3E-35 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 SUPERFAMILY SSF56059 98 288 1.18E-48 T 23-04-2016 THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 Gene3D G3DSA:3.30.1490.20 103 172 6.6E-6 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 Pfam PF08443 RimK-like ATP-grasp domain 97 286 6.5E-69 T 23-04-2016 IPR013651 ATP-grasp fold, RimK-type THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 PANTHER PTHR21621 1 288 4.8E-123 T 23-04-2016 THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 Gene3D G3DSA:3.40.50.20 6 102 6.2E-19 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 3 286 6.2E-87 T 23-04-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 53.688 T 23-04-2016 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK THIMO_RS05430 1036a12bb38dc52c2744d4b8457cd766 301 PANTHER PTHR21621:SF0 1 288 4.8E-123 T 23-04-2016 THIMO_RS08425 24b5f869d3c602d063213336a1c17272 157 Pfam PF05137 Fimbrial assembly protein (PilN) 79 150 4.6E-5 T 23-04-2016 IPR007813 Fimbrial assembly PilN THIMO_RS05100 730fc8373c92d6ba7232ca4564d7438f 138 PANTHER PTHR39624:SF1 34 132 4.3E-12 T 23-04-2016 THIMO_RS05100 730fc8373c92d6ba7232ca4564d7438f 138 Gene3D G3DSA:3.30.300.20 1 124 2.3E-21 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS05100 730fc8373c92d6ba7232ca4564d7438f 138 Pfam PF02566 OsmC-like protein 35 124 1.2E-12 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS05100 730fc8373c92d6ba7232ca4564d7438f 138 SUPERFAMILY SSF82784 3 123 5.1E-20 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS05100 730fc8373c92d6ba7232ca4564d7438f 138 PANTHER PTHR39624 34 132 4.3E-12 T 23-04-2016 THIMO_RS09085 bcf2475759713a38e0267782cbd33f13 247 Gene3D G3DSA:3.40.50.1580 3 242 3.9E-68 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 THIMO_RS09085 bcf2475759713a38e0267782cbd33f13 247 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 2 247 31.729 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 THIMO_RS09085 bcf2475759713a38e0267782cbd33f13 247 PANTHER PTHR11904:SF1 3 242 1.6E-78 T 23-04-2016 THIMO_RS09085 bcf2475759713a38e0267782cbd33f13 247 PANTHER PTHR11904 3 242 1.6E-78 T 23-04-2016 IPR001369 PNP/MTAP phosphorylase THIMO_RS09085 bcf2475759713a38e0267782cbd33f13 247 SUPERFAMILY SSF53167 3 243 1.36E-69 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 THIMO_RS09085 bcf2475759713a38e0267782cbd33f13 247 Pfam PF01048 Phosphorylase superfamily 3 242 1.6E-39 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 THIMO_RS06625 5234e191c22fc58d79d99a765f4278bb 75 Pfam PF06150 ChaB 9 74 5.5E-27 T 23-04-2016 IPR009317 ChaB THIMO_RS06625 5234e191c22fc58d79d99a765f4278bb 75 SUPERFAMILY SSF140376 2 74 4.32E-27 T 23-04-2016 THIMO_RS06015 2582c624874bd306d59e02d548b400ee 160 PANTHER PTHR39650 1 160 6.4E-15 T 23-04-2016 THIMO_RS06015 2582c624874bd306d59e02d548b400ee 160 PANTHER PTHR39650:SF1 1 160 6.4E-15 T 23-04-2016 THIMO_RS06015 2582c624874bd306d59e02d548b400ee 160 Pfam PF01864 Putative integral membrane protein DUF46 70 157 1.3E-8 T 23-04-2016 IPR032690 CDP-archaeol synthase KEGG: 00564+2.7.7.67|MetaCyc: PWY-6349|UniPathway: UPA00940 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Pfam PF06689 ClpX C4-type zinc finger 15 52 7.7E-21 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Gene3D G3DSA:3.40.50.300 67 254 1.6E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Gene3D G3DSA:3.40.50.300 294 310 1.6E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 PANTHER PTHR11262 2 414 9.9E-249 T 23-04-2016 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 411 1.9E-203 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 SMART SM00994 14 53 1.8E-24 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 7 415 52.74 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 SMART SM01086 317 412 4.6E-35 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Gene3D G3DSA:1.10.8.60 316 419 1.9E-36 T 23-04-2016 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 SUPERFAMILY SSF57716 15 50 7.27E-12 T 23-04-2016 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 SUPERFAMILY SSF52540 63 402 3.85E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 394 1.0E-15 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 310 1.8E-47 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS02035 6d725e68788d4bc983c250592f0e96dd 423 SMART SM00382 112 297 2.6E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 PANTHER PTHR24222:SF30 1 574 1.3E-184 T 23-04-2016 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 Pfam PF00005 ABC transporter 355 503 6.7E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 5 533 7.9E-144 T 23-04-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 SMART SM00382 364 550 8.2E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 PANTHER PTHR24222 1 574 1.3E-184 T 23-04-2016 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 SUPERFAMILY SSF52540 330 572 4.65E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 Gene3D G3DSA:3.40.50.300 340 564 4.1E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 Pfam PF00664 ABC transporter transmembrane region 23 288 5.2E-14 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 SUPERFAMILY SSF90123 6 325 5.36E-47 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS01735 35af6418b81f7d0d589eaf1bbd6c95f1 579 Gene3D G3DSA:1.20.1560.10 6 326 1.2E-40 T 23-04-2016 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 Pfam PF02569 Pantoate-beta-alanine ligase 8 282 4.1E-101 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 Gene3D G3DSA:3.30.1300.10 182 286 4.0E-28 T 23-04-2016 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 PANTHER PTHR21299 1 285 8.9E-128 T 23-04-2016 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 7 284 7.4E-97 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 SUPERFAMILY SSF52374 6 284 1.2E-103 T 23-04-2016 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 PANTHER PTHR21299:SF1 1 285 8.9E-128 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 Gene3D G3DSA:3.40.50.620 3 181 9.4E-77 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS16710 95796e6bc648c94497a7b26c1d28104b 294 Hamap MF_00158 Pantothenate synthetase [panC]. 7 284 40.694 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 Gene3D G3DSA:3.40.50.300 1 277 3.0E-129 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 Hamap MF_01227 CTP synthase [pyrG]. 1 535 50.672 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 Pfam PF06418 CTP synthase N-terminus 1 261 2.6E-123 T 23-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 TIGRFAM TIGR00337 PyrG: CTP synthase 1 530 6.8E-245 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 SUPERFAMILY SSF52317 283 536 2.15E-86 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 Pfam PF00117 Glutamine amidotransferase class-I 296 530 3.2E-55 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 SUPERFAMILY SSF52540 1 264 1.39E-120 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 PANTHER PTHR11550 1 541 0.0 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 THIMO_RS06325 d193962adde67d5e0d8b59ba332ee83d 543 Gene3D G3DSA:3.40.50.880 282 536 3.0E-95 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS06745 fac7324eed31d54429fbc181e0fa3c02 462 PANTHER PTHR11999:SF111 1 446 1.4E-223 T 23-04-2016 THIMO_RS06745 fac7324eed31d54429fbc181e0fa3c02 462 SUPERFAMILY SSF53383 15 445 7.55E-134 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS06745 fac7324eed31d54429fbc181e0fa3c02 462 PANTHER PTHR11999 1 446 1.4E-223 T 23-04-2016 THIMO_RS06745 fac7324eed31d54429fbc181e0fa3c02 462 Gene3D G3DSA:3.40.640.10 77 323 8.4E-28 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS06745 fac7324eed31d54429fbc181e0fa3c02 462 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 41 381 1.0E-79 T 23-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 THIMO_RS06745 fac7324eed31d54429fbc181e0fa3c02 462 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 21 445 4.4E-207 T 23-04-2016 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 SUPERFAMILY SSF102114 12 266 5.36E-48 T 23-04-2016 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 Pfam PF04055 Radical SAM superfamily 36 204 3.4E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 PANTHER PTHR11135:SF1 1 303 4.0E-130 T 23-04-2016 IPR005911 Protein YhcC-like GO:0051536 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 303 2.1E-112 T 23-04-2016 IPR005911 Protein YhcC-like GO:0051536 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 SMART SM00729 23 250 7.3E-44 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 PANTHER PTHR11135 1 303 4.0E-130 T 23-04-2016 THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 Pfam PF16199 Radical_SAM C-terminal domain 212 294 2.4E-24 T 23-04-2016 IPR032432 Radical SAM, C-terminal extension THIMO_RS05385 502630b39ce3de2164a414869eacf7af 319 Gene3D G3DSA:3.80.30.20 24 254 7.8E-31 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 Pfam PF00563 EAL domain 457 690 1.2E-39 T 23-04-2016 IPR001633 EAL domain THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 SUPERFAMILY SSF55785 134 259 4.19E-9 T 23-04-2016 IPR000014 PAS domain THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.30.450.20 129 259 6.0E-8 T 23-04-2016 THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 Pfam PF00990 Diguanylate cyclase, GGDEF domain 277 414 1.2E-7 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 PANTHER PTHR33121 450 690 6.9E-13 T 23-04-2016 THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 SMART SM00267 261 435 0.0014 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.20.20.450 456 692 5.1E-40 T 23-04-2016 IPR001633 EAL domain THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.40.50.2300 42 113 4.5E-4 T 23-04-2016 THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 SUPERFAMILY SSF141868 457 693 1.27E-40 T 23-04-2016 IPR001633 EAL domain THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.30.70.270 277 418 1.6E-12 T 23-04-2016 THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 SUPERFAMILY SSF55073 277 417 4.16E-10 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 PANTHER PTHR33121:SF16 450 690 6.9E-13 T 23-04-2016 THIMO_RS10655 634d4a7877ac060a12bd4cef2fb36ef4 699 SMART SM00052 450 695 6.1E-12 T 23-04-2016 IPR001633 EAL domain THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Pfam PF09334 tRNA synthetases class I (M) 39 171 2.5E-19 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 637 674 2.8E-6 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 442 590 4.0E-7 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PANTHER PTHR11946 240 592 0.0 T 23-04-2016 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PANTHER PTHR11946 637 874 0.0 T 23-04-2016 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PANTHER PTHR11946 1 206 0.0 T 23-04-2016 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Gene3D G3DSA:3.40.50.620 449 591 1.2E-149 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Gene3D G3DSA:3.40.50.620 637 666 1.2E-149 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Gene3D G3DSA:3.40.50.620 4 222 1.2E-149 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Gene3D G3DSA:1.10.730.10 667 809 1.1E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 SUPERFAMILY SSF52374 440 685 1.23E-141 T 23-04-2016 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 SUPERFAMILY SSF52374 5 226 1.23E-141 T 23-04-2016 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PANTHER PTHR11946:SF7 240 592 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PANTHER PTHR11946:SF7 637 874 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PANTHER PTHR11946:SF7 1 206 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 504 522 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 542 564 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 575 585 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.0E-50 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Gene3D G3DSA:3.90.740.10 223 448 5.6E-54 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 873 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 873 22.722 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 SUPERFAMILY SSF50677 226 439 3.01E-50 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 SUPERFAMILY SSF47323 681 873 1.08E-35 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 427 6.2E-66 T 23-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05160 f895b95a1acbde80fa853f42f92a500a 874 Pfam PF08264 Anticodon-binding domain of tRNA 714 834 1.3E-15 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 THIMO_RS15650 77702d87310a5a884b6cef4a37849744 447 Pfam PF07690 Major Facilitator Superfamily 31 389 7.1E-27 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 THIMO_RS15650 77702d87310a5a884b6cef4a37849744 447 SUPERFAMILY SSF103473 25 436 4.32E-40 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS15650 77702d87310a5a884b6cef4a37849744 447 Gene3D G3DSA:1.20.1250.20 227 437 3.6E-22 T 23-04-2016 THIMO_RS15650 77702d87310a5a884b6cef4a37849744 447 Gene3D G3DSA:1.20.1250.20 26 212 7.9E-17 T 23-04-2016 THIMO_RS15650 77702d87310a5a884b6cef4a37849744 447 PANTHER PTHR23524 13 431 4.8E-48 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 SMART SM00116 146 199 5.4 T 23-04-2016 IPR000644 CBS domain THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 SMART SM00116 210 258 0.01 T 23-04-2016 IPR000644 CBS domain THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Gene3D G3DSA:1.25.60.10 6 130 1.6E-25 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 SUPERFAMILY SSF54631 139 278 8.34E-27 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 PANTHER PTHR41394:SF1 39 441 1.7E-51 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 PANTHER PTHR41394 39 441 1.7E-51 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 SMART SM00924 36 139 1.2E-33 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 SUPERFAMILY SSF158791 10 136 1.96E-29 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF00571 CBS domain 203 257 5.1E-5 T 23-04-2016 IPR000644 CBS domain THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF00571 CBS domain 139 195 1.0E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF01769 Divalent cation transporter 323 444 8.7E-24 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Gene3D G3DSA:1.10.357.20 280 451 5.1E-47 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Gene3D G3DSA:3.10.580.10 131 262 1.2E-18 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 SUPERFAMILY SSF161093 280 451 1.03E-45 T 23-04-2016 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 TIGRFAM TIGR00400 mgtE: magnesium transporter 20 451 1.8E-92 T 23-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 THIMO_RS12110 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF03448 MgtE intracellular N domain 36 137 1.2E-26 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Pfam PF01330 RuvA N terminal domain 2 62 3.6E-19 T 23-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Pfam PF07499 RuvA, C-terminal domain 157 198 5.2E-14 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.5E-14 T 23-04-2016 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Gene3D G3DSA:1.10.8.10 157 197 2.2E-16 T 23-04-2016 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 SUPERFAMILY SSF47781 66 134 5.93E-20 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 30.259 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Gene3D G3DSA:2.40.50.140 2 64 6.8E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 SUPERFAMILY SSF50249 2 63 1.71E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 SMART SM00278 73 92 96.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 SMART SM00278 108 127 0.053 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 SUPERFAMILY SSF46929 157 198 1.57E-9 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 PANTHER PTHR33796 2 202 1.6E-74 T 23-04-2016 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 Gene3D G3DSA:1.10.150.20 68 136 2.0E-28 T 23-04-2016 THIMO_RS17145 87ed16e00db84dbbe18a0a542930cac0 202 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 198 1.5E-54 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 189 202 3.4E-5 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 3.4E-5 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 159 3.4E-5 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 100 200 2.3E-10 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 Gene3D G3DSA:3.40.50.1000 5 223 1.1E-31 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 67 194 1.6E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 200 3.4E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 PANTHER PTHR12725 7 229 5.0E-39 T 23-04-2016 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 PANTHER PTHR12725:SF65 7 229 5.0E-39 T 23-04-2016 THIMO_RS05035 c7fc85386d7c257560c1c843ceee3cf4 235 SUPERFAMILY SSF56784 5 228 2.25E-42 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 Gene3D G3DSA:3.40.50.2300 2 130 1.0E-42 T 23-04-2016 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 SMART SM00448 6 117 5.8E-41 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 SUPERFAMILY SSF52172 3 134 4.84E-42 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 SMART SM00267 123 295 2.6E-52 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 Pfam PF00990 Diguanylate cyclase, GGDEF domain 134 291 3.9E-39 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 SUPERFAMILY SSF55073 139 293 1.02E-45 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 Gene3D G3DSA:3.30.70.270 136 293 8.3E-49 T 23-04-2016 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 130 293 9.9E-44 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 PANTHER PTHR26402:SF495 233 255 6.5E-42 T 23-04-2016 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 PANTHER PTHR26402:SF495 6 135 6.5E-42 T 23-04-2016 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 Pfam PF00072 Response regulator receiver domain 8 118 1.8E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 PANTHER PTHR26402 233 255 6.5E-42 T 23-04-2016 THIMO_RS07670 4794a8db4d096dd7e37897ce073ca092 310 PANTHER PTHR26402 6 135 6.5E-42 T 23-04-2016 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 PANTHER PTHR11624 249 638 1.7E-302 T 23-04-2016 IPR033247 Transketolase family THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 PANTHER PTHR11624 32 226 1.7E-302 T 23-04-2016 IPR033247 Transketolase family THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52518 324 511 6.82E-59 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 ProSitePatterns PS00801 Transketolase signature 1. 44 63 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52922 498 623 5.1E-32 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 19 290 4.2E-120 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52518 251 388 3.35E-79 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52518 14 207 3.35E-79 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 20 623 1.5E-268 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Pfam PF02779 Transketolase, pyrimidine binding domain 327 486 3.6E-38 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Gene3D G3DSA:3.40.50.970 342 502 9.6E-37 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Gene3D G3DSA:3.40.50.920 503 624 1.5E-33 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 18 627 45.929 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 SMART SM00861 326 490 1.1E-67 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Pfam PF02780 Transketolase, C-terminal domain 502 618 9.7E-25 T 23-04-2016 IPR033248 Transketolase, C-terminal domain THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 PANTHER PTHR11624:SF20 249 638 1.7E-302 T 23-04-2016 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 PANTHER PTHR11624:SF20 32 226 1.7E-302 T 23-04-2016 THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Gene3D G3DSA:3.40.50.970 250 341 1.1E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 Gene3D G3DSA:3.40.50.970 35 209 1.1E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03665 f6aedf7636e3a77f84f907fee5a51e0e 639 ProSitePatterns PS00802 Transketolase signature 2. 432 448 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.70.1430 611 719 2.0E-9 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.70.1430 64 164 4.7E-22 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82714 214 296 1.44E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 64 158 4.88E-22 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PANTHER PTHR32063 925 1088 0.0 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PANTHER PTHR32063 26 908 0.0 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 606 720 2.27E-11 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82866 919 1089 6.02E-38 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 374 397 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 483 506 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 401 422 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 62 80 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 429 453 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 508 531 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 593 610 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PANTHER PTHR32063:SF16 925 1088 0.0 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 PANTHER PTHR32063:SF16 26 908 0.0 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 311 365 9.42E-5 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 181 212 9.42E-5 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:1.20.1640.10 334 531 7.2E-42 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Pfam PF00873 AcrB/AcrD/AcrF family 39 1089 8.7E-151 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82714 770 854 3.4E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.2090.10 214 296 9.7E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.2090.10 770 853 1.2E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:1.10.3850.10 861 1092 2.0E-60 T 23-04-2016 THIMO_RS10685 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82866 335 531 1.7E-35 T 23-04-2016 THIMO_RS06945 3f5b2865a9797901ea8eff7c1714c915 603 SMART SM00729 208 425 1.2E-19 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS06945 3f5b2865a9797901ea8eff7c1714c915 603 Gene3D G3DSA:3.80.30.20 212 405 1.3E-30 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS06945 3f5b2865a9797901ea8eff7c1714c915 603 SUPERFAMILY SSF102114 213 444 3.4E-30 T 23-04-2016 THIMO_RS06945 3f5b2865a9797901ea8eff7c1714c915 603 Pfam PF04055 Radical SAM superfamily 214 373 1.5E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS06945 3f5b2865a9797901ea8eff7c1714c915 603 PANTHER PTHR11918 101 405 3.5E-30 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS14995 5379e121bee43b5f4f97aa4b6a4daf73 204 PANTHER PTHR20855:SF3 5 204 6.6E-57 T 23-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 THIMO_RS14995 5379e121bee43b5f4f97aa4b6a4daf73 204 PANTHER PTHR20855 5 204 6.6E-57 T 23-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 THIMO_RS14995 5379e121bee43b5f4f97aa4b6a4daf73 204 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 203 7.5E-62 T 23-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 THIMO_RS14995 5379e121bee43b5f4f97aa4b6a4daf73 204 Pfam PF03006 Haemolysin-III related 4 197 6.3E-41 T 23-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 THIMO_RS11475 ce60878b4de99bfebb5a0710327bd069 294 Gene3D G3DSA:3.90.1200.10 107 252 1.2E-11 T 23-04-2016 THIMO_RS11475 ce60878b4de99bfebb5a0710327bd069 294 PANTHER PTHR12149:SF8 2 294 2.1E-112 T 23-04-2016 THIMO_RS11475 ce60878b4de99bfebb5a0710327bd069 294 PIRSF PIRSF006221 3 294 1.3E-93 T 23-04-2016 IPR016477 Fructosamine/Ketosamine-3-kinase THIMO_RS11475 ce60878b4de99bfebb5a0710327bd069 294 Pfam PF03881 Fructosamine kinase 4 291 3.0E-103 T 23-04-2016 IPR016477 Fructosamine/Ketosamine-3-kinase THIMO_RS11475 ce60878b4de99bfebb5a0710327bd069 294 PANTHER PTHR12149 2 294 2.1E-112 T 23-04-2016 THIMO_RS11475 ce60878b4de99bfebb5a0710327bd069 294 SUPERFAMILY SSF56112 19 287 2.19E-40 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 SUPERFAMILY SSF46626 40 193 6.73E-54 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 Gene3D G3DSA:1.10.760.10 197 333 4.3E-40 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 Pfam PF00034 Cytochrome c 214 326 9.6E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 Pfam PF03150 Di-haem cytochrome c peroxidase 56 205 8.5E-53 T 23-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 SUPERFAMILY SSF46626 192 347 3.82E-40 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 PANTHER PTHR30600 48 336 2.5E-112 T 23-04-2016 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 Gene3D G3DSA:1.10.760.10 49 196 1.3E-53 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 PIRSF PIRSF000294 3 350 2.1E-148 T 23-04-2016 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 THIMO_RS12895 045e6cbe19c3e525cef630760155cdda 350 PANTHER PTHR30600:SF7 48 336 2.5E-112 T 23-04-2016 THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF50346 37 253 2.92E-71 T 23-04-2016 IPR011033 PRC-barrel-like THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:3.90.50.10 116 255 8.9E-56 T 23-04-2016 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF05239 PRC-barrel domain 145 200 1.1E-11 T 23-04-2016 IPR027275 PRC-barrel domain THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF81490 10 44 5.1E-10 T 23-04-2016 THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:4.10.540.10 5 114 3.3E-34 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 4 252 1.2E-80 T 23-04-2016 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 THIMO_RS13210 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 6 135 1.8E-48 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF50346 37 253 2.92E-71 T 23-04-2016 IPR011033 PRC-barrel-like THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:3.90.50.10 116 255 8.9E-56 T 23-04-2016 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF05239 PRC-barrel domain 145 200 1.1E-11 T 23-04-2016 IPR027275 PRC-barrel domain THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF81490 10 44 5.1E-10 T 23-04-2016 THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:4.10.540.10 5 114 3.3E-34 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 4 252 1.2E-80 T 23-04-2016 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 THIMO_RS14365 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 6 135 1.8E-48 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 THIMO_RS09485 2bb8859e7266dc5e6b376bdcb15c8f4f 260 PANTHER PTHR34216 1 256 3.2E-52 T 23-04-2016 THIMO_RS09485 2bb8859e7266dc5e6b376bdcb15c8f4f 260 SUPERFAMILY SSF88713 32 214 1.88E-36 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 THIMO_RS09485 2bb8859e7266dc5e6b376bdcb15c8f4f 260 Pfam PF01522 Polysaccharide deacetylase 65 201 2.5E-27 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 THIMO_RS09485 2bb8859e7266dc5e6b376bdcb15c8f4f 260 Gene3D G3DSA:3.20.20.370 40 202 4.8E-26 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 THIMO_RS02595 36f3cd14150c96abb6b3a78b8e9d5e9a 146 Pfam PF01850 PIN domain 8 121 3.4E-7 T 23-04-2016 IPR002716 PIN domain THIMO_RS02595 36f3cd14150c96abb6b3a78b8e9d5e9a 146 SUPERFAMILY SSF88723 7 134 3.64E-16 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS02595 36f3cd14150c96abb6b3a78b8e9d5e9a 146 Gene3D G3DSA:3.40.50.1010 8 122 8.3E-5 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS04640 f65bc60ddf5ab54b2a0136fbc852b7b7 229 PANTHER PTHR22939:SF104 1 204 3.4E-41 T 23-04-2016 THIMO_RS04640 f65bc60ddf5ab54b2a0136fbc852b7b7 229 PANTHER PTHR22939 1 204 3.4E-41 T 23-04-2016 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 SMART SM00342 227 311 9.8E-18 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 SUPERFAMILY SSF46689 263 311 7.17E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 311 3.1E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 296 3.1E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 Gene3D G3DSA:1.10.10.60 213 262 2.7E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 PANTHER PTHR11019:SF50 64 311 1.2E-29 T 23-04-2016 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 Pfam PF12833 Helix-turn-helix domain 233 311 1.6E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 Gene3D G3DSA:1.10.10.60 263 311 1.5E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 PANTHER PTHR11019 64 311 1.2E-29 T 23-04-2016 THIMO_RS12395 86bf83f9178c26eea7664c6fce942d4b 311 Pfam PF14525 AraC-binding-like domain 21 196 1.0E-28 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 THIMO_RS13990 e717a0a9f945001b3fb7df1be12c184a 274 SUPERFAMILY SSF53597 36 251 5.77E-27 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain THIMO_RS13990 e717a0a9f945001b3fb7df1be12c184a 274 Gene3D G3DSA:3.40.430.10 32 254 9.5E-32 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain THIMO_RS13990 e717a0a9f945001b3fb7df1be12c184a 274 Pfam PF01872 RibD C-terminal domain 37 233 9.9E-13 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 Gene3D G3DSA:3.10.580.10 273 395 1.8E-16 T 23-04-2016 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 SUPERFAMILY SSF52540 43 269 1.25E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 Pfam PF00571 CBS domain 346 393 0.007 T 23-04-2016 IPR000644 CBS domain THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 Pfam PF00005 ABC transporter 45 192 3.3E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 PANTHER PTHR24220:SF374 6 16 1.6E-148 T 23-04-2016 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 PANTHER PTHR24220:SF374 41 273 1.6E-148 T 23-04-2016 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 SUPERFAMILY SSF54631 278 393 1.36E-10 T 23-04-2016 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 395 4.1E-134 T 23-04-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 SMART SM00382 53 250 1.8E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 Gene3D G3DSA:3.40.50.300 41 264 6.5E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 PANTHER PTHR24220 6 16 1.6E-148 T 23-04-2016 THIMO_RS17370 c52c3f7c1e647236497b4f9b833b41ca 397 PANTHER PTHR24220 41 273 1.6E-148 T 23-04-2016 THIMO_RS10530 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10530 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS10530 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS10530 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10530 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01765 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01765 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS01765 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS01765 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01765 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS11040 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS11040 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS11040 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS11040 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11040 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06810 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06810 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS06810 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS06810 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06810 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS16790 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS16790 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS16790 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS16790 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16790 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS00095 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS00095 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS00095 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS00095 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00095 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01775 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01775 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS01775 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS01775 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01775 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10755 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 61 8.9E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10755 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.4E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS10755 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS10755 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.10 62 106 3.0E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10755 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS12545 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 99 156 1.1E-20 T 23-04-2016 IPR025959 Winged helix-turn helix domain THIMO_RS12545 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12545 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.10 225 328 2.9E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12545 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 23-04-2016 THIMO_RS12545 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 23-04-2016 THIMO_RS12545 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS15955 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 99 156 1.1E-20 T 23-04-2016 IPR025959 Winged helix-turn helix domain THIMO_RS15955 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS15955 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.10 225 328 2.9E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS15955 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 23-04-2016 THIMO_RS15955 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 23-04-2016 THIMO_RS15955 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07105 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 99 156 1.1E-20 T 23-04-2016 IPR025959 Winged helix-turn helix domain THIMO_RS07105 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS07105 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.10 225 328 2.9E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS07105 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 23-04-2016 THIMO_RS07105 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 23-04-2016 THIMO_RS07105 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10310 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 99 156 1.1E-20 T 23-04-2016 IPR025959 Winged helix-turn helix domain THIMO_RS10310 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10310 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.10 225 328 2.9E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10310 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 23-04-2016 THIMO_RS10310 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 23-04-2016 THIMO_RS10310 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS13355 46cb8b75ea2490900418bc7b1964f9df 345 SUPERFAMILY SSF81345 7 338 1.7E-81 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS13355 46cb8b75ea2490900418bc7b1964f9df 345 PANTHER PTHR30472 7 343 7.7E-116 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 THIMO_RS13355 46cb8b75ea2490900418bc7b1964f9df 345 Gene3D G3DSA:1.10.3470.10 8 341 2.4E-106 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS13355 46cb8b75ea2490900418bc7b1964f9df 345 PANTHER PTHR30472:SF3 7 343 7.7E-116 T 23-04-2016 THIMO_RS13355 46cb8b75ea2490900418bc7b1964f9df 345 Pfam PF01032 FecCD transport family 22 337 1.5E-93 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00388 185 250 5.7E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00448 431 539 0.17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00448 575 688 2.2E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF47384 168 251 2.16E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Pfam PF00512 His Kinase A (phospho-acceptor) domain 185 249 2.6E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Pfam PF00072 Response regulator receiver domain 577 688 8.1E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:3.30.565.10 251 420 4.8E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF52172 428 544 1.25E-7 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00387 297 415 2.7E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 297 414 3.2E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:3.40.50.2300 424 547 8.2E-7 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:3.40.50.2300 570 692 4.0E-40 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF52172 573 692 1.42E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PANTHER PTHR24423 62 87 1.1E-151 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PANTHER PTHR24423 164 418 1.1E-151 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PANTHER PTHR24423 557 693 1.1E-151 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 368 7.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 393 7.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 412 7.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 354 7.3E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PANTHER PTHR24423:SF382 62 87 1.1E-151 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PANTHER PTHR24423:SF382 164 418 1.1E-151 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 PANTHER PTHR24423:SF382 557 693 1.1E-151 T 23-04-2016 THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF55874 240 417 1.83E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03185 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:1.10.287.130 178 246 1.4E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02170 1b82281de14735e4d04cd9da783816f1 441 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 86 316 5.5E-34 T 23-04-2016 IPR000477 Reverse transcriptase domain THIMO_RS02170 1b82281de14735e4d04cd9da783816f1 441 PANTHER PTHR19446 29 354 3.6E-81 T 23-04-2016 THIMO_RS02170 1b82281de14735e4d04cd9da783816f1 441 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 34 403 4.1E-96 T 23-04-2016 IPR030931 Group II intron reverse transcriptase/maturase THIMO_RS02170 1b82281de14735e4d04cd9da783816f1 441 SUPERFAMILY SSF56672 27 346 8.09E-46 T 23-04-2016 THIMO_RS02170 1b82281de14735e4d04cd9da783816f1 441 PANTHER PTHR19446:SF383 29 354 3.6E-81 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 7 348 4.7E-173 T 23-04-2016 IPR017537 Peptidase M42, hydrolase THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 SUPERFAMILY SSF53187 184 346 8.46E-48 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 SUPERFAMILY SSF53187 9 89 8.46E-48 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 PIRSF PIRSF001123 9 347 2.7E-26 T 23-04-2016 IPR008007 Peptidase M42 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 PANTHER PTHR32481 6 359 6.0E-134 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 PANTHER PTHR32481:SF7 6 359 6.0E-134 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 Gene3D G3DSA:3.40.630.10 173 347 8.9E-48 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 Gene3D G3DSA:3.40.630.10 7 76 8.9E-48 T 23-04-2016 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 Pfam PF05343 M42 glutamyl aminopeptidase 52 340 6.7E-67 T 23-04-2016 IPR008007 Peptidase M42 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 Gene3D G3DSA:2.40.30.40 77 172 1.4E-22 T 23-04-2016 IPR023367 Peptidase M42, domain 2 THIMO_RS08610 680b730ab25f85f8df47d47a6f53e6c4 369 SUPERFAMILY SSF101821 77 189 2.44E-24 T 23-04-2016 THIMO_RS11045 6c3da3ddc66da41faef6776fc9533733 320 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 2 45 3.5E-10 T 23-04-2016 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain THIMO_RS11045 6c3da3ddc66da41faef6776fc9533733 320 PANTHER PTHR33498:SF1 19 311 7.6E-35 T 23-04-2016 THIMO_RS11045 6c3da3ddc66da41faef6776fc9533733 320 PANTHER PTHR33498 19 311 7.6E-35 T 23-04-2016 THIMO_RS11045 6c3da3ddc66da41faef6776fc9533733 320 Pfam PF01610 Transposase 60 294 3.4E-73 T 23-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain THIMO_RS17435 7e2498880d84c7f4e9f0708783ddc9c9 387 SUPERFAMILY SSF51261 207 379 5.75E-42 T 23-04-2016 IPR011055 Duplicated hybrid motif THIMO_RS17435 7e2498880d84c7f4e9f0708783ddc9c9 387 PANTHER PTHR21666 1 387 6.7E-61 T 23-04-2016 THIMO_RS17435 7e2498880d84c7f4e9f0708783ddc9c9 387 PANTHER PTHR21666:SF213 1 387 6.7E-61 T 23-04-2016 THIMO_RS17435 7e2498880d84c7f4e9f0708783ddc9c9 387 Pfam PF01551 Peptidase family M23 283 375 1.5E-21 T 23-04-2016 IPR016047 Peptidase M23 THIMO_RS17435 7e2498880d84c7f4e9f0708783ddc9c9 387 Gene3D G3DSA:2.70.70.10 241 380 5.9E-34 T 23-04-2016 THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Gene3D G3DSA:3.30.750.80 81 180 1.8E-31 T 23-04-2016 THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 PANTHER PTHR11061 4 397 1.9E-95 T 23-04-2016 THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 SUPERFAMILY SSF53335 84 391 5.37E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Gene3D G3DSA:2.30.130.10 6 74 1.3E-15 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 SUPERFAMILY SSF88697 6 74 7.46E-11 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 PANTHER PTHR11061:SF12 4 397 1.9E-95 T 23-04-2016 THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 169 357 1.9E-15 T 23-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 THIMO_RS09070 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Gene3D G3DSA:3.40.50.150 184 393 8.7E-62 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00350 16591fc1313c15c1778343c4a09b265d 124 Pfam PF01521 Iron-sulphur cluster biosynthesis 10 90 1.8E-9 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS00350 16591fc1313c15c1778343c4a09b265d 124 Gene3D G3DSA:2.60.300.12 10 101 2.4E-20 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS00350 16591fc1313c15c1778343c4a09b265d 124 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 11 115 2.4E-21 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 THIMO_RS00350 16591fc1313c15c1778343c4a09b265d 124 PANTHER PTHR10072 8 115 2.3E-19 T 23-04-2016 THIMO_RS00350 16591fc1313c15c1778343c4a09b265d 124 SUPERFAMILY SSF89360 5 101 1.22E-19 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 1.4E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 1.4E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Pfam PF00158 Sigma-54 interaction domain 144 310 1.9E-67 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:3.40.50.2300 5 133 1.4E-37 T 23-04-2016 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 SUPERFAMILY SSF52540 144 387 1.62E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Pfam PF00072 Response regulator receiver domain 6 115 1.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 SUPERFAMILY SSF46689 410 465 2.02E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:1.10.10.60 423 462 1.5E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 PANTHER PTHR32071 1 473 2.4E-192 T 23-04-2016 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:1.10.8.60 317 394 1.1E-23 T 23-04-2016 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 SMART SM00448 4 115 6.5E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:3.40.50.300 142 316 1.7E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 Pfam PF02954 Bacterial regulatory protein, Fis family 423 463 4.1E-14 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 SMART SM00382 164 307 3.5E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS03940 46d9a7a154601dbe55af12328b676da1 473 SUPERFAMILY SSF52172 1 187 4.27E-46 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS09710 9438fa955a92205558a8f7f3284f7d18 185 Pfam PF00665 Integrase core domain 18 131 2.1E-27 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS09710 9438fa955a92205558a8f7f3284f7d18 185 Gene3D G3DSA:3.30.420.10 11 172 5.4E-32 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS09710 9438fa955a92205558a8f7f3284f7d18 185 SUPERFAMILY SSF53098 10 176 2.88E-37 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS09710 9438fa955a92205558a8f7f3284f7d18 185 PANTHER PTHR32552 1 177 8.0E-54 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PANTHER PTHR10133:SF27 6 893 0.0 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00475 2 259 2.7E-119 T 23-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF88723 6 168 1.04E-55 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:1.20.1060.10 508 629 7.2E-33 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 TIGRFAM TIGR00593 pola: DNA polymerase I 7 894 3.7E-277 T 23-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 168 7.8E-53 T 23-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 ProSitePatterns PS00447 DNA polymerase family A signature. 720 739 - T 23-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00482 652 858 6.4E-117 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 768 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 720 745 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 696 709 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 811 827 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 644 659 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 841 854 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 666 689 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 621 643 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 779 790 3.9E-78 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.30.70.370 785 894 2.7E-65 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.30.70.370 630 677 2.7E-65 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.30.420.10 293 507 2.7E-87 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00474 295 482 7.6E-42 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.40.50.1010 6 183 7.0E-65 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:1.10.150.20 678 784 3.5E-35 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00279 171 206 2.6E-11 T 23-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF47807 169 282 4.93E-30 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:1.10.150.20 184 244 5.2E-26 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF53098 293 482 1.22E-57 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 PANTHER PTHR10133 6 893 0.0 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF56672 487 894 3.22E-157 T 23-04-2016 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF00476 DNA polymerase family A 517 892 5.7E-152 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF01612 3'-5' exonuclease 297 482 4.3E-40 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 THIMO_RS12400 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 169 262 6.6E-27 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 Gene3D G3DSA:3.40.640.10 49 291 3.1E-85 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 PANTHER PTHR11986:SF79 9 381 9.2E-164 T 23-04-2016 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 Gene3D G3DSA:3.90.1150.10 296 386 2.2E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 Gene3D G3DSA:3.90.1150.10 5 48 2.2E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 Pfam PF00202 Aminotransferase class-III 12 382 3.4E-112 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 5 383 2.4E-142 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 212 249 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 PANTHER PTHR11986 9 381 9.2E-164 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 2 386 44.868 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 THIMO_RS15625 9802e64886b69f5153351579eef9f53e 392 SUPERFAMILY SSF53383 6 385 1.01E-126 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 SUPERFAMILY SSF54211 1 181 1.42E-41 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 47.885 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 7.8E-20 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 Gene3D G3DSA:3.30.230.70 5 237 9.9E-30 T 23-04-2016 IPR027408 PNPase/RNase PH domain THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 PANTHER PTHR11953:SF0 1 236 8.4E-74 T 23-04-2016 THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 SUPERFAMILY SSF55666 152 237 9.16E-23 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 PANTHER PTHR11953 1 236 8.4E-74 T 23-04-2016 THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 5.6E-109 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 23-04-2016 IPR018336 Ribonuclease PH, conserved site THIMO_RS03610 d876a5b52544e1adc770ff49f918f344 251 Pfam PF03725 3' exoribonuclease family, domain 2 157 223 5.8E-10 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 Pfam PF01063 Amino-transferase class IV 36 267 8.5E-56 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 Gene3D G3DSA:3.20.10.10 136 294 2.9E-58 T 23-04-2016 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 PANTHER PTHR11825 1 305 1.6E-113 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 306 1.2E-130 T 23-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 SUPERFAMILY SSF56752 1 303 6.93E-104 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 Gene3D G3DSA:3.30.470.10 8 130 1.1E-38 T 23-04-2016 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 222 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS08125 1669ad16761b8bffb2e40e4158c8afbf 306 PANTHER PTHR11825:SF7 1 305 1.6E-113 T 23-04-2016 THIMO_RS02920 80e74c0ed348e620ac716c0e3140cf2b 435 Gene3D G3DSA:1.10.510.10 103 223 1.0E-19 T 23-04-2016 THIMO_RS02920 80e74c0ed348e620ac716c0e3140cf2b 435 Pfam PF00069 Protein kinase domain 101 224 1.3E-14 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS02920 80e74c0ed348e620ac716c0e3140cf2b 435 PANTHER PTHR11909 20 241 1.5E-12 T 23-04-2016 THIMO_RS02920 80e74c0ed348e620ac716c0e3140cf2b 435 SUPERFAMILY SSF56112 21 228 1.62E-25 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS02920 80e74c0ed348e620ac716c0e3140cf2b 435 SMART SM00220 19 290 5.7E-6 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS02920 80e74c0ed348e620ac716c0e3140cf2b 435 PANTHER PTHR11909:SF7 20 241 1.5E-12 T 23-04-2016 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 Gene3D G3DSA:2.40.150.20 1 122 5.0E-54 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.2E-57 T 23-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 23-04-2016 IPR019972 Ribosomal protein L14P, conserved site THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 PANTHER PTHR11761 1 122 1.5E-76 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 SMART SM01374 1 122 6.1E-86 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.4E-54 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 SUPERFAMILY SSF50193 1 122 8.63E-52 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 THIMO_RS13580 b444696ba80c9e9d0b79fa4cc2a1142f 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.873 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 Pfam PF00753 Metallo-beta-lactamase superfamily 48 186 6.8E-13 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 PANTHER PTHR32145:SF2 14 412 7.6E-121 T 23-04-2016 THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 SUPERFAMILY SSF56281 16 291 3.8E-50 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 Gene3D G3DSA:3.40.50.360 270 409 2.0E-40 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 SUPERFAMILY SSF52218 268 411 1.17E-35 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 ProSitePatterns PS00201 Flavodoxin signature. 271 287 - T 23-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 PANTHER PTHR32145 14 412 7.6E-121 T 23-04-2016 THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 Gene3D G3DSA:3.60.15.10 16 259 3.5E-80 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 SMART SM00849 47 240 1.5E-37 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 Pfam PF00258 Flavodoxin 271 398 2.3E-11 T 23-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 THIMO_RS15465 2f4791974b9e2993b2154620f6b9f5da 427 PIRSF PIRSF005243 11 415 1.2E-125 T 23-04-2016 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1 103 7.5E-15 T 23-04-2016 IPR000014 PAS domain THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 111 204 1.1E-33 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 Gene3D G3DSA:3.30.70.270 113 235 4.7E-41 T 23-04-2016 THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 SUPERFAMILY SSF55785 2 99 8.55E-24 T 23-04-2016 IPR000014 PAS domain THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 SMART SM00267 101 250 2.6E-29 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 PANTHER PTHR10799 70 234 7.7E-18 T 23-04-2016 THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 PANTHER PTHR10799:SF774 70 234 7.7E-18 T 23-04-2016 THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 Pfam PF13426 PAS domain 4 100 2.9E-15 T 23-04-2016 IPR000014 PAS domain THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 SMART SM00086 59 101 4.2E-4 T 23-04-2016 IPR001610 PAC motif THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 SUPERFAMILY SSF55073 117 234 6.91E-33 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 Pfam PF00990 Diguanylate cyclase, GGDEF domain 112 231 4.6E-36 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS00840 cfade55735a01edb090b8b4be38ef493 251 Gene3D G3DSA:3.30.450.20 2 100 6.6E-24 T 23-04-2016 THIMO_RS09930 3d6a32fd1b33de12525272e317b6d676 149 Gene3D G3DSA:1.20.120.520 7 136 9.9E-9 T 23-04-2016 THIMO_RS09930 3d6a32fd1b33de12525272e317b6d676 149 Pfam PF01814 Hemerythrin HHE cation binding domain 6 136 3.5E-10 T 23-04-2016 IPR012312 Haemerythrin-like THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 Gene3D G3DSA:3.40.1190.20 2 327 1.0E-69 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 PANTHER PTHR10584 2 328 1.1E-102 T 23-04-2016 THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 SUPERFAMILY SSF53613 2 317 1.87E-75 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 273 286 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 Pfam PF00294 pfkB family carbohydrate kinase 49 318 4.3E-53 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 PRINTS PR00990 Ribokinase signature 56 75 4.0E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 PRINTS PR00990 Ribokinase signature 244 255 4.0E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 PRINTS PR00990 Ribokinase signature 206 221 4.0E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 THIMO_RS12500 90e28645eeed61d86d41ffc25c2c0e08 330 PANTHER PTHR10584:SF153 2 328 1.1E-102 T 23-04-2016 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 PANTHER PTHR13696 30 282 6.8E-66 T 23-04-2016 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 TIGRFAM TIGR02016 BchX: chlorophyllide reductase iron protein subunit X 31 312 1.5E-127 T 23-04-2016 IPR010246 Chlorophyllide reductase iron protein subunit X GO:0005524|GO:0015979|GO:0016628|GO:0030494|GO:0051539 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 Gene3D G3DSA:3.40.50.300 32 275 7.8E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 SUPERFAMILY SSF52540 30 275 1.04E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 ProSitePatterns PS00746 NifH/frxC family signature 1. 115 127 - T 23-04-2016 IPR030655 NifH/chlL conserved site THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 32 292 1.9E-95 T 23-04-2016 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 PANTHER PTHR13696:SF5 30 282 6.8E-66 T 23-04-2016 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 ProSitePatterns PS00692 NifH/frxC family signature 2. 153 166 - T 23-04-2016 IPR030655 NifH/chlL conserved site THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 PRINTS PR00091 Nitrogenase component II signature 152 167 1.7E-26 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 PRINTS PR00091 Nitrogenase component II signature 36 49 1.7E-26 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 PRINTS PR00091 Nitrogenase component II signature 58 73 1.7E-26 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14295 be0c880366bbcf4271cf0262f72e7896 328 PRINTS PR00091 Nitrogenase component II signature 113 127 1.7E-26 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 PANTHER PTHR10422 6 459 8.0E-243 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 440 5.6E-111 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 203 258 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 PANTHER PTHR10422:SF21 6 459 8.0E-243 T 23-04-2016 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 8 461 1.4E-202 T 23-04-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 SUPERFAMILY SSF81442 9 461 2.09E-117 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS06405 e9e66e2cbf19d86e92295863a225f3f2 477 Gene3D G3DSA:1.20.210.10 13 461 8.7E-68 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 SUPERFAMILY SSF161098 89 157 5.1E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 PANTHER PTHR30085:SF1 257 399 1.1E-153 T 23-04-2016 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 PANTHER PTHR30085:SF1 20 178 1.1E-153 T 23-04-2016 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 394 1.0E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 89 153 1.5E-17 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 SUPERFAMILY SSF161098 192 380 1.1E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 Gene3D G3DSA:1.10.3720.10 88 157 8.9E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 Gene3D G3DSA:1.10.3720.10 191 394 1.3E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 PANTHER PTHR30085 257 399 1.1E-153 T 23-04-2016 THIMO_RS07365 8990bb37202b9864a210b0edbb266d33 399 PANTHER PTHR30085 20 178 1.1E-153 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 Pfam PF00873 AcrB/AcrD/AcrF family 8 1031 8.4E-147 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:1.10.3850.10 274 493 2.3E-35 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:1.10.3850.10 815 1031 1.5E-51 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PANTHER PTHR32063:SF33 4 1042 1.6E-249 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82866 809 1033 1.05E-43 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PANTHER PTHR32063 4 1042 1.6E-249 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.2090.10 724 810 1.9E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82693 269 327 9.94E-8 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82693 142 181 9.94E-8 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82866 296 492 7.06E-30 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82714 734 810 5.36E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.2090.10 181 267 4.7E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82693 45 134 2.49E-15 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.70.1430 45 142 1.6E-17 T 23-04-2016 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82714 182 266 4.45E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 6.7E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 6.7E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 6.7E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 6.7E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 6.7E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS16555 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 6.7E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 PANTHER PTHR11404:SF8 28 140 2.5E-27 T 23-04-2016 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 SUPERFAMILY SSF46609 27 75 1.06E-13 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 66 136 8.1E-17 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 27 73 2.2E-9 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 Gene3D G3DSA:1.10.287.990 28 73 6.3E-11 T 23-04-2016 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 SUPERFAMILY SSF54719 70 140 4.19E-20 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS07280 6259d176aca0e6a9ffab01628edae99e 164 PANTHER PTHR11404 28 140 2.5E-27 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.40.10.10 30 157 5.0E-35 T 23-04-2016 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Pfam PF13180 PDZ domain 384 469 2.7E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Pfam PF13180 PDZ domain 269 357 4.4E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PANTHER PTHR22939:SF98 28 52 2.1E-126 T 23-04-2016 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PANTHER PTHR22939:SF98 78 363 2.1E-126 T 23-04-2016 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Pfam PF13365 Trypsin-like peptidase domain 96 229 2.3E-34 T 23-04-2016 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 SUPERFAMILY SSF50494 29 259 3.81E-66 T 23-04-2016 IPR009003 Peptidase S1, PA clan THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.30.42.10 383 471 3.1E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.30.42.10 270 368 4.5E-30 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 105 117 6.1E-49 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 308 320 6.1E-49 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 200 217 6.1E-49 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 6.1E-49 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 6.1E-49 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 126 146 6.1E-49 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.40.10.10 158 269 3.3E-45 T 23-04-2016 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 SMART SM00228 268 350 5.2E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 SMART SM00228 382 462 2.7E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 31 466 2.0E-149 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 SUPERFAMILY SSF50156 383 470 1.45E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 SUPERFAMILY SSF50156 226 351 1.13E-24 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PANTHER PTHR22939 28 52 2.1E-126 T 23-04-2016 THIMO_RS08730 895e7cd9e88c168ae0a41388cfbe8c3c 476 PANTHER PTHR22939 78 363 2.1E-126 T 23-04-2016 THIMO_RS10235 9d9dc95082d17cc8ed3f1a140d1cf227 160 SUPERFAMILY SSF54001 37 158 1.81E-35 T 23-04-2016 THIMO_RS10235 9d9dc95082d17cc8ed3f1a140d1cf227 160 PANTHER PTHR21666 23 160 1.3E-29 T 23-04-2016 THIMO_RS10235 9d9dc95082d17cc8ed3f1a140d1cf227 160 Gene3D G3DSA:3.90.1720.10 38 159 2.5E-36 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS10235 9d9dc95082d17cc8ed3f1a140d1cf227 160 Pfam PF00877 NlpC/P60 family 52 155 1.7E-22 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS04940 5187c686780c1d602ad95f3848740a5b 274 PIRSF PIRSF016557 1 244 1.8E-57 T 23-04-2016 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 UniPathway: UPA00934 THIMO_RS04940 5187c686780c1d602ad95f3848740a5b 274 SUPERFAMILY SSF89550 2 201 6.28E-12 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS04940 5187c686780c1d602ad95f3848740a5b 274 PANTHER PTHR39181 2 237 3.2E-47 T 23-04-2016 THIMO_RS04940 5187c686780c1d602ad95f3848740a5b 274 PANTHER PTHR39181:SF1 2 237 3.2E-47 T 23-04-2016 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 PANTHER PTHR32552 4 300 2.5E-20 T 23-04-2016 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 1.3E-16 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 135 295 1.6E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS11035 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:1.10.10.60 9 70 9.7E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 PANTHER PTHR32552 4 300 2.5E-20 T 23-04-2016 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 1.3E-16 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 135 295 1.6E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS16785 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:1.10.10.60 9 70 9.7E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 PANTHER PTHR32552 4 300 2.5E-20 T 23-04-2016 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 1.3E-16 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 135 295 1.6E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10525 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:1.10.10.60 9 70 9.7E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 PANTHER PTHR32552 4 300 2.5E-20 T 23-04-2016 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 1.3E-16 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 135 295 1.6E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS06815 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:1.10.10.60 9 70 9.7E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 PANTHER PTHR32552 4 300 2.5E-20 T 23-04-2016 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 1.3E-16 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 135 295 1.6E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS01760 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:1.10.10.60 9 70 9.7E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 PANTHER PTHR21600:SF2 3 245 2.8E-82 T 23-04-2016 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 Pfam PF00849 RNA pseudouridylate synthase 74 203 1.6E-17 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 Pfam PF01479 S4 domain 6 51 9.1E-12 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 SMART SM00363 6 64 3.3E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 112 126 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 SUPERFAMILY SSF55120 72 242 1.22E-43 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 SUPERFAMILY SSF55174 7 101 1.23E-13 T 23-04-2016 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 Gene3D G3DSA:3.10.290.10 4 63 1.6E-18 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 PANTHER PTHR21600 3 245 2.8E-82 T 23-04-2016 THIMO_RS09945 2bafc2971e052c48b3ee3595fe73cd16 291 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 78 238 3.6E-54 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 THIMO_RS00335 895211ad03b7d0942fbaad156bacdc84 267 Gene3D G3DSA:3.40.1190.20 7 256 1.1E-70 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS00335 895211ad03b7d0942fbaad156bacdc84 267 Pfam PF08543 Phosphomethylpyrimidine kinase 16 249 6.1E-66 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 THIMO_RS00335 895211ad03b7d0942fbaad156bacdc84 267 SUPERFAMILY SSF53613 6 258 1.44E-60 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS00335 895211ad03b7d0942fbaad156bacdc84 267 PANTHER PTHR20858 1 249 1.4E-62 T 23-04-2016 THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 8.8E-32 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 Gene3D G3DSA:3.30.1340.10 1 87 6.4E-33 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 Pfam PF00381 PTS HPr component phosphorylation site 3 81 7.6E-28 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 23-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 8.5E-17 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 8.5E-17 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 8.5E-17 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 PANTHER PTHR33705:SF2 1 89 1.8E-39 T 23-04-2016 THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 PANTHER PTHR33705 1 89 1.8E-39 T 23-04-2016 THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 23-04-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site THIMO_RS13190 6f96b7e3457b93cd66d5eea58f698d3a 89 SUPERFAMILY SSF55594 1 87 1.7E-28 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like THIMO_RS16240 649a5f4326e4e03c5d636b69bd0885f5 112 Pfam PF01909 Nucleotidyltransferase domain 12 52 2.2E-6 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS16240 649a5f4326e4e03c5d636b69bd0885f5 112 SUPERFAMILY SSF81301 5 112 2.04E-13 T 23-04-2016 THIMO_RS16240 649a5f4326e4e03c5d636b69bd0885f5 112 Gene3D G3DSA:3.30.460.10 2 112 7.0E-16 T 23-04-2016 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 PANTHER PTHR11759 10 128 1.1E-71 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 PIRSF PIRSF002131 1 128 1.2E-54 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 Pfam PF00411 Ribosomal protein S11 18 127 3.1E-52 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 9 125 6.9E-56 T 23-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 ProSitePatterns PS00054 Ribosomal protein S11 signature. 96 118 - T 23-04-2016 IPR018102 Ribosomal S11, conserved site THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 Gene3D G3DSA:3.30.420.80 6 128 2.6E-55 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 128 32.903 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13515 573be0f25583807a9e6e024a959cf375 128 SUPERFAMILY SSF53137 14 128 6.1E-48 T 23-04-2016 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 Pfam PF13545 Crp-like helix-turn-helix domain 164 238 9.5E-18 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 Gene3D G3DSA:2.60.120.10 16 165 6.0E-29 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 SUPERFAMILY SSF46785 161 239 2.37E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 Gene3D G3DSA:1.10.10.10 166 240 3.5E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 PANTHER PTHR24567 16 238 6.1E-75 T 23-04-2016 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 SMART SM00100 26 147 7.7E-19 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 SMART SM00419 183 231 2.3E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 205 220 2.4E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 205 2.4E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 SUPERFAMILY SSF51206 19 158 1.06E-27 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 Pfam PF00027 Cyclic nucleotide-binding domain 46 128 4.9E-15 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 ProSitePatterns PS00042 Crp-type HTH domain signature. 191 214 - T 23-04-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 THIMO_RS06315 a107fa6764e162f586c5e8b645fa99a0 253 PANTHER PTHR24567:SF28 16 238 6.1E-75 T 23-04-2016 THIMO_RS07065 7fc7f374e8f4171a335f4d401ab08802 710 Gene3D G3DSA:1.10.390.10 314 441 1.5E-13 T 23-04-2016 THIMO_RS07065 7fc7f374e8f4171a335f4d401ab08802 710 PANTHER PTHR11533:SF185 158 464 4.3E-21 T 23-04-2016 THIMO_RS07065 7fc7f374e8f4171a335f4d401ab08802 710 PANTHER PTHR11533 158 464 4.3E-21 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 THIMO_RS07065 7fc7f374e8f4171a335f4d401ab08802 710 SUPERFAMILY SSF55486 220 440 3.37E-44 T 23-04-2016 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 256 42.788 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 131 1.7E-7 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 30 63 2.4E-6 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 27 0.0018 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 2 254 2.9E-99 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 SUPERFAMILY SSF51161 2 256 1.47E-78 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Gene3D G3DSA:1.20.1180.10 191 256 6.4E-21 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 PANTHER PTHR23416:SF8 1 248 4.5E-122 T 23-04-2016 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 PIRSF PIRSF000456 1 256 1.6E-101 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 PANTHER PTHR23416 1 248 4.5E-122 T 23-04-2016 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Gene3D G3DSA:2.160.10.10 2 188 4.0E-49 T 23-04-2016 THIMO_RS03505 3f1949f7b5f4659b71859623c55db135 256 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 174 255 7.9E-25 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 Gene3D G3DSA:2.40.50.140 397 453 9.6E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 SUPERFAMILY SSF141322 392 453 4.32E-10 T 23-04-2016 THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 Pfam PF01957 NfeD-like C-terminal, partner-binding 317 453 8.7E-35 T 23-04-2016 IPR002810 NfeD-like, C-terminal domain THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 PANTHER PTHR33507:SF1 15 456 8.9E-141 T 23-04-2016 THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 PANTHER PTHR33507 15 456 8.9E-141 T 23-04-2016 THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 Gene3D G3DSA:3.90.226.10 40 137 8.3E-19 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 Gene3D G3DSA:3.90.226.10 192 226 8.3E-19 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS15825 69663b1458ca1f8e414d89eade0b5f22 460 SUPERFAMILY SSF52096 39 216 3.65E-27 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00955 271 600 4.6E-180 T 23-04-2016 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 231 645 9.71E-147 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 Pfam PF08206 Ribonuclease B OB domain 98 155 5.6E-21 T 23-04-2016 IPR013223 Ribonuclease B, N-terminal OB domain THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00316 646 729 3.0E-13 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 149 247 6.85E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 Gene3D G3DSA:2.40.50.140 648 726 3.4E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 Pfam PF00773 RNB domain 271 599 2.5E-106 T 23-04-2016 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 Hamap MF_01895 Ribonuclease R [rnr]. 49 729 58.547 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 PANTHER PTHR23355 15 753 1.3E-274 T 23-04-2016 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 79 727 4.6E-231 T 23-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00357 97 156 3.5E-16 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00357 161 225 6.9 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 ProSitePatterns PS01175 Ribonuclease II family signature. 567 591 - T 23-04-2016 IPR022966 Ribonuclease II/R, conserved site THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 PANTHER PTHR23355:SF9 15 753 1.3E-274 T 23-04-2016 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 78 158 1.98E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 Pfam PF00575 S1 RNA binding domain 645 726 3.4E-13 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 TIGRFAM TIGR02063 RNase_R: ribonuclease R 30 728 3.1E-267 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 THIMO_RS11140 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 648 728 8.29E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SUPERFAMILY SSF158472 209 258 9.29E-6 T 23-04-2016 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Gene3D G3DSA:3.30.450.20 263 386 3.0E-26 T 23-04-2016 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SMART SM00387 547 661 1.4E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SMART SM00388 433 501 8.6E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SMART SM00304 209 261 2.0E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Pfam PF00512 His Kinase A (phospho-acceptor) domain 433 500 9.7E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Pfam PF00072 Response regulator receiver domain 690 799 5.1E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Gene3D G3DSA:3.40.50.2300 682 806 3.8E-43 T 23-04-2016 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PANTHER PTHR24423 10 16 9.8E-163 T 23-04-2016 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PANTHER PTHR24423 252 386 9.8E-163 T 23-04-2016 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PANTHER PTHR24423 412 804 9.8E-163 T 23-04-2016 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SUPERFAMILY SSF55874 490 659 9.56E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SUPERFAMILY SSF55785 257 386 1.31E-24 T 23-04-2016 IPR000014 PAS domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Gene3D G3DSA:1.10.287.130 426 497 7.1E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SUPERFAMILY SSF47384 418 502 8.63E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 547 658 6.4E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Gene3D G3DSA:3.30.565.10 502 664 1.3E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SUPERFAMILY SSF52172 686 806 4.13E-41 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 600 2.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 658 2.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 639 2.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 PRINTS PR00344 Bacterial sensor protein C-terminal signature 604 614 2.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SMART SM00448 688 801 1.0E-43 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 SMART SM00091 268 335 4.1E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Pfam PF00672 HAMP domain 190 257 4.6E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 264 395 5.8E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS03995 2b042139119d32c5050ae31d55bb46c2 808 Pfam PF13426 PAS domain 279 386 9.6E-13 T 23-04-2016 IPR000014 PAS domain THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 SUPERFAMILY SSF56349 367 426 3.24E-52 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 SUPERFAMILY SSF56349 98 314 3.24E-52 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 PANTHER PTHR30629 1 281 4.4E-40 T 23-04-2016 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 Pfam PF13356 Domain of unknown function (DUF4102) 3 92 2.7E-14 T 23-04-2016 IPR025166 Domain of unknown function DUF4102 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 Pfam PF00589 Phage integrase family 202 415 6.3E-19 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 PANTHER PTHR30629:SF2 1 281 4.4E-40 T 23-04-2016 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 Gene3D G3DSA:1.10.150.130 98 194 3.4E-11 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 Gene3D G3DSA:1.10.443.10 373 425 9.9E-30 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS08435 3988849b8c9fb138e86f951927d0111b 443 Gene3D G3DSA:1.10.443.10 201 320 9.9E-30 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS02560 79b998fd02a2749c3eef201bd998d8c3 490 Pfam PF14403 Circularly permuted ATP-grasp type 2 91 466 2.1E-160 T 23-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 THIMO_RS02560 79b998fd02a2749c3eef201bd998d8c3 490 PANTHER PTHR34595:SF3 24 490 1.8E-261 T 23-04-2016 THIMO_RS02560 79b998fd02a2749c3eef201bd998d8c3 490 PIRSF PIRSF005522 11 490 5.4E-211 T 23-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 THIMO_RS02560 79b998fd02a2749c3eef201bd998d8c3 490 PANTHER PTHR34595 24 490 1.8E-261 T 23-04-2016 THIMO_RS02560 79b998fd02a2749c3eef201bd998d8c3 490 SUPERFAMILY SSF56059 336 481 3.39E-61 T 23-04-2016 THIMO_RS02560 79b998fd02a2749c3eef201bd998d8c3 490 SUPERFAMILY SSF56059 36 229 3.39E-61 T 23-04-2016 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 Gene3D G3DSA:3.40.50.790 69 159 5.1E-38 T 23-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 226 2.4E-101 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 Pfam PF00687 Ribosomal protein L1p/L10e family 30 220 1.2E-48 T 23-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 PANTHER PTHR23105:SF5 11 225 3.6E-74 T 23-04-2016 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 SUPERFAMILY SSF56808 6 226 6.41E-79 T 23-04-2016 IPR023674 Ribosomal protein L1-like THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 PIRSF PIRSF002155 1 227 3.9E-74 T 23-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.943 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 23-04-2016 IPR023673 Ribosomal protein L1, conserved site THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 PANTHER PTHR23105 11 225 3.6E-74 T 23-04-2016 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 Gene3D G3DSA:3.30.190.20 161 225 1.1E-44 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 THIMO_RS13680 bba33c4e69513b7b9173dc446e4242d3 231 Gene3D G3DSA:3.30.190.20 17 68 1.1E-44 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 Pfam PF01022 Bacterial regulatory protein, arsR family 28 71 1.0E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 2.0E-9 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 2.0E-9 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 2.0E-9 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 SMART SM00418 20 98 9.9E-26 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 PANTHER PTHR33154:SF10 19 110 1.1E-25 T 23-04-2016 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 PANTHER PTHR33154 19 110 1.1E-25 T 23-04-2016 THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 Gene3D G3DSA:1.10.10.10 12 102 3.1E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00450 1453fa75ccd29f1bacad67e0f5198c53 111 SUPERFAMILY SSF46785 11 101 8.56E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 Gene3D G3DSA:3.40.50.1820 17 285 2.0E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 Pfam PF00561 alpha/beta hydrolase fold 41 274 6.5E-24 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 SUPERFAMILY SSF53474 17 285 1.45E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 65 80 2.9E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 2.9E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 2.9E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 2.9E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS07790 9a0da619d86af7fa3d681cd3330c49dd 290 PANTHER PTHR10992 30 287 5.8E-48 T 23-04-2016 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF13899 Thioredoxin-like 699 782 6.5E-14 T 23-04-2016 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 SUPERFAMILY SSF74863 213 336 9.02E-27 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 PANTHER PTHR32234 363 811 1.3E-148 T 23-04-2016 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 PANTHER PTHR32234 215 337 1.3E-148 T 23-04-2016 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 PANTHER PTHR32234:SF0 363 811 1.3E-148 T 23-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 PANTHER PTHR32234:SF0 215 337 1.3E-148 T 23-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 SUPERFAMILY SSF74863 26 143 1.96E-32 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF11412 Disulphide bond corrector protein DsbC 27 142 8.0E-31 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF11412 Disulphide bond corrector protein DsbC 214 334 1.9E-24 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Gene3D G3DSA:3.40.30.10 695 809 3.2E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 401 606 8.9E-17 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 7 810 34.485 T 23-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 SUPERFAMILY SSF52833 699 807 1.07E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Gene3D G3DSA:2.60.40.1250 23 145 3.0E-37 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain THIMO_RS00865 fc5d2b18717cba09a189ca9806db4d1b 811 Gene3D G3DSA:2.60.40.1250 211 339 3.9E-31 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain THIMO_RS00670 3d63ad8c2d8082bdf205b7857d7f046c 229 Pfam PF09559 Cas6 Crispr 19 219 4.2E-63 T 23-04-2016 IPR014174 CRISPR-associated protein, Cas6-related THIMO_RS00670 3d63ad8c2d8082bdf205b7857d7f046c 229 TIGRFAM TIGR02807 cas6_cmx6: CRISPR-associated protein Cas6, subtype MYXAN 18 217 1.2E-30 T 23-04-2016 IPR014174 CRISPR-associated protein, Cas6-related THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 PANTHER PTHR23416:SF53 17 164 6.4E-48 T 23-04-2016 THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 136 2.5E-5 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 48 1.2E-6 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 PANTHER PTHR23416 17 164 6.4E-48 T 23-04-2016 THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 110 138 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 SUPERFAMILY SSF51161 4 164 6.55E-43 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS00150 d65372bfe4680b42d923f548e583ce2f 193 Gene3D G3DSA:2.160.10.10 3 158 1.2E-42 T 23-04-2016 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 103 9.5E-14 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 PANTHER PTHR10210 4 269 2.2E-40 T 23-04-2016 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 3 281 2.4E-48 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 PANTHER PTHR10210:SF32 4 269 2.2E-40 T 23-04-2016 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 Gene3D G3DSA:3.40.50.2020 149 268 6.6E-21 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 SUPERFAMILY SSF53271 2 144 1.17E-25 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 Gene3D G3DSA:3.40.50.2020 2 148 1.5E-24 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 SMART SM01400 1 106 1.4E-18 T 23-04-2016 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 Pfam PF00156 Phosphoribosyl transferase domain 136 237 7.9E-10 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 THIMO_RS17130 2ea4bc7f0f61666cd9ba474d17222bd5 295 SUPERFAMILY SSF53271 152 278 1.44E-26 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 SUPERFAMILY SSF55681 156 496 2.39E-120 T 23-04-2016 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 Gene3D G3DSA:3.30.930.10 151 494 1.1E-118 T 23-04-2016 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 SUPERFAMILY SSF50249 7 149 1.03E-43 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 Pfam PF00152 tRNA synthetases class II (D, K and N) 158 495 9.1E-81 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PANTHER PTHR22594:SF4 5 498 4.2E-263 T 23-04-2016 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 Pfam PF01336 OB-fold nucleic acid binding domain 62 140 1.6E-16 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 Gene3D G3DSA:2.40.50.140 10 148 2.5E-47 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 209 225 1.6E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 193 203 1.6E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 238 251 1.6E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 256 273 1.6E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 380 396 1.6E-38 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 PANTHER PTHR22594 5 498 4.2E-263 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 15 498 44.776 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS09355 499f447099d92c9d29133bb1072e21a7 502 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 10 497 9.8E-206 T 23-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS03840 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 THIMO_RS03840 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 52 2.7E-7 T 23-04-2016 THIMO_RS03840 ef664b8ac6964b3c8258a38e2afbe0e3 96 Gene3D G3DSA:1.10.10.60 12 92 5.2E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS03840 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215 2 89 2.3E-42 T 23-04-2016 THIMO_RS03840 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215:SF2 2 89 2.3E-42 T 23-04-2016 THIMO_RS04340 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 THIMO_RS04340 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 52 2.7E-7 T 23-04-2016 THIMO_RS04340 ef664b8ac6964b3c8258a38e2afbe0e3 96 Gene3D G3DSA:1.10.10.60 12 92 5.2E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS04340 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215 2 89 2.3E-42 T 23-04-2016 THIMO_RS04340 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215:SF2 2 89 2.3E-42 T 23-04-2016 THIMO_RS05360 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 THIMO_RS05360 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 52 2.7E-7 T 23-04-2016 THIMO_RS05360 ef664b8ac6964b3c8258a38e2afbe0e3 96 Gene3D G3DSA:1.10.10.60 12 92 5.2E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS05360 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215 2 89 2.3E-42 T 23-04-2016 THIMO_RS05360 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215:SF2 2 89 2.3E-42 T 23-04-2016 THIMO_RS02260 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 THIMO_RS02260 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 52 2.7E-7 T 23-04-2016 THIMO_RS02260 ef664b8ac6964b3c8258a38e2afbe0e3 96 Gene3D G3DSA:1.10.10.60 12 92 5.2E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS02260 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215 2 89 2.3E-42 T 23-04-2016 THIMO_RS02260 ef664b8ac6964b3c8258a38e2afbe0e3 96 PANTHER PTHR33215:SF2 2 89 2.3E-42 T 23-04-2016 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Pfam PF02151 UvrB/uvrC motif 630 662 2.1E-9 T 23-04-2016 IPR001943 UVR domain GO:0005515 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 SUPERFAMILY SSF52540 37 82 3.91E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 SUPERFAMILY SSF52540 458 579 3.91E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Gene3D G3DSA:4.10.860.10 612 662 1.9E-16 T 23-04-2016 IPR001943 UVR domain GO:0005515 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Gene3D G3DSA:3.30.2060.10 159 230 6.1E-10 T 23-04-2016 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Pfam PF04851 Type III restriction enzyme, res subunit 16 138 1.6E-8 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Pfam PF00271 Helicase conserved C-terminal domain 440 544 7.0E-18 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Gene3D G3DSA:3.40.50.300 420 576 2.4E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Gene3D G3DSA:3.40.50.300 278 338 3.0E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Gene3D G3DSA:3.40.50.300 388 409 3.0E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Gene3D G3DSA:3.40.50.300 7 89 3.0E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 SMART SM00487 9 425 1.8E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Pfam PF12344 Ultra-violet resistance protein B 551 592 5.6E-22 T 23-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 6 662 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 SUPERFAMILY SSF52540 3 414 5.01E-135 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 664 43.159 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 PANTHER PTHR24029 1 662 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 SMART SM00490 459 545 1.0E-19 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS08695 f57869d8cc2c6445dd88b30a257d4a87 668 SUPERFAMILY SSF46600 619 662 3.01E-11 T 23-04-2016 IPR001943 UVR domain GO:0005515 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 SMART SM00382 166 309 1.5E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 SUPERFAMILY SSF52540 145 385 2.55E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 440 460 4.8E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 423 440 4.8E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 SUPERFAMILY SSF52172 5 189 6.97E-27 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Gene3D G3DSA:1.10.8.60 319 371 1.0E-20 T 23-04-2016 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 SMART SM00448 3 116 3.3E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Gene3D G3DSA:3.40.50.300 143 318 2.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 SUPERFAMILY SSF46689 359 459 1.43E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Pfam PF02954 Bacterial regulatory protein, Fis family 417 457 8.1E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Gene3D G3DSA:1.10.10.60 372 459 5.1E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Pfam PF00072 Response regulator receiver domain 6 114 3.1E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Gene3D G3DSA:3.40.50.2300 3 123 3.9E-22 T 23-04-2016 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 PANTHER PTHR32071 1 459 6.5E-155 T 23-04-2016 THIMO_RS06715 8f6062d4ee6f5fb3931e7c5156930f0f 460 Pfam PF00158 Sigma-54 interaction domain 146 312 2.4E-61 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 Pfam PF01632 Ribosomal protein L35 2 62 5.3E-21 T 23-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 7.0E-23 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 PANTHER PTHR33343 1 64 1.1E-21 T 23-04-2016 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 SUPERFAMILY SSF143034 2 64 2.09E-20 T 23-04-2016 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.964 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.9E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.9E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.9E-16 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 THIMO_RS13465 b0c270ff82a165986d9d3c30830d11d1 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 23-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS16980 e2c6a6ab4f8c8dfa3496023659a6786a 260 SUPERFAMILY SSF53335 98 187 1.38E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16980 e2c6a6ab4f8c8dfa3496023659a6786a 260 Gene3D G3DSA:3.40.50.150 99 185 7.8E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 Pfam PF01103 Surface antigen 455 775 2.7E-77 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 PIRSF PIRSF006076 5 775 4.0E-259 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 183 270 7.2E-17 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 100 179 2.3E-11 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 273 351 3.7E-12 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 354 428 2.6E-16 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 31 775 7.3E-265 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 775 24.834 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 PANTHER PTHR12815:SF11 14 775 9.3E-237 T 23-04-2016 THIMO_RS03485 baea55dc1cf5e73383dd445988732934 775 PANTHER PTHR12815 14 775 9.3E-237 T 23-04-2016 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 Gene3D G3DSA:1.10.645.10 166 522 4.1E-59 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 PANTHER PTHR11993 121 528 3.3E-151 T 23-04-2016 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 PANTHER PTHR11993:SF16 121 528 3.3E-151 T 23-04-2016 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 SUPERFAMILY SSF143243 40 190 2.35E-24 T 23-04-2016 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 78 152 8.9E-17 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 289 458 2.3E-31 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 100 149 4.0E-11 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 Pfam PF00374 Nickel-dependent hydrogenase 214 280 1.1E-7 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS15240 aa60708dbd824c3b88436c80656b9528 533 SUPERFAMILY SSF56762 186 532 3.14E-92 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 Gene3D G3DSA:3.30.1380.10 28 249 1.4E-70 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 SUPERFAMILY SSF55166 28 249 8.24E-61 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 28 248 31.811 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 PANTHER PTHR22935 1 250 1.2E-89 T 23-04-2016 THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 PANTHER PTHR22935:SF67 1 250 1.2E-89 T 23-04-2016 THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 PIRSF PIRSF026671 6 250 2.7E-67 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 Pfam PF01427 D-ala-D-ala dipeptidase 28 150 2.3E-19 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 THIMO_RS08920 9f7f2484a141d29a4e7236e5f7cc59e6 250 Pfam PF01427 D-ala-D-ala dipeptidase 181 249 4.6E-15 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 SUPERFAMILY SSF102405 87 289 3.97E-43 T 23-04-2016 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 SUPERFAMILY SSF47781 9 65 3.06E-6 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 PANTHER PTHR32039:SF8 71 372 6.8E-109 T 23-04-2016 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 Gene3D G3DSA:1.10.10.10 325 373 3.0E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 Gene3D G3DSA:3.40.50.450 119 262 3.1E-12 T 23-04-2016 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 Gene3D G3DSA:1.10.150.20 17 64 4.3E-7 T 23-04-2016 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 PANTHER PTHR32039 71 372 6.8E-109 T 23-04-2016 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 Pfam PF02481 DNA recombination-mediator protein A 81 283 1.9E-78 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 THIMO_RS05970 ae0167672b1591523a5a7dcb2a2bfa42 386 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 76 291 1.0E-78 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 SUPERFAMILY SSF51161 253 434 7.89E-50 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Pfam PF12804 MobA-like NTP transferase domain 6 122 2.2E-23 T 23-04-2016 IPR025877 MobA-like NTP transferase THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 PANTHER PTHR22572:SF115 4 447 1.3E-204 T 23-04-2016 THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 SUPERFAMILY SSF53448 1 250 1.79E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Gene3D G3DSA:2.160.10.10 323 443 3.6E-30 T 23-04-2016 THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 450 42.27 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 297 1.6E-5 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 316 350 0.0022 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 393 426 4.3E-8 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 5 452 9.9E-189 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 PANTHER PTHR22572 4 447 1.3E-204 T 23-04-2016 THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Gene3D G3DSA:3.90.550.10 2 241 2.5E-69 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS05610 966670d83a50244df0dda97991cb0ac6 456 Gene3D G3DSA:2.160.10.10 242 322 6.1E-18 T 23-04-2016 THIMO_RS15830 fd2f40dfb52a434cf06dd5b98b641834 154 Pfam PF02391 MoaE protein 9 120 2.7E-34 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS15830 fd2f40dfb52a434cf06dd5b98b641834 154 PANTHER PTHR23404 24 154 2.1E-36 T 23-04-2016 THIMO_RS15830 fd2f40dfb52a434cf06dd5b98b641834 154 SUPERFAMILY SSF54690 3 149 2.09E-48 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS15830 fd2f40dfb52a434cf06dd5b98b641834 154 PANTHER PTHR23404:SF2 24 154 2.1E-36 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS15830 fd2f40dfb52a434cf06dd5b98b641834 154 Gene3D G3DSA:3.90.1170.40 2 149 6.3E-52 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS10695 ab94ec3273751335e98c5ad7d878cb0a 493 Gene3D G3DSA:3.40.50.300 61 94 3.0E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10695 ab94ec3273751335e98c5ad7d878cb0a 493 Gene3D G3DSA:3.40.50.300 140 254 3.0E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10695 ab94ec3273751335e98c5ad7d878cb0a 493 SUPERFAMILY SSF52540 58 263 7.6E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10695 ab94ec3273751335e98c5ad7d878cb0a 493 Pfam PF00350 Dynamin family 62 224 1.1E-13 T 23-04-2016 IPR022812 Dynamin superfamily THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Gene3D G3DSA:1.10.10.640 176 206 1.2E-22 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Gene3D G3DSA:1.10.10.640 77 117 1.2E-22 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Pfam PF05494 MlaC protein 39 201 7.2E-49 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Gene3D G3DSA:3.10.450.50 32 76 3.5E-24 T 23-04-2016 IPR032710 NTF2-like domain THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Gene3D G3DSA:3.10.450.50 120 175 3.5E-24 T 23-04-2016 IPR032710 NTF2-like domain THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 PIRSF PIRSF004649 6 210 9.3E-51 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC THIMO_RS00630 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 PANTHER PTHR36573 7 207 5.9E-41 T 23-04-2016 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF00204 DNA gyrase B 218 387 1.4E-57 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF55874 3 215 3.41E-71 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 265 278 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 502 519 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 733 749 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 484 500 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 522 534 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 68 81 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 417 431 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 33 48 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 111 125 6.8E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 801 100.335 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 ProSitePatterns PS00177 DNA topoisomerase II signature. 419 427 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.30.230.10 217 389 4.2E-73 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.40.50.670 715 783 2.0E-100 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.40.50.670 401 547 2.0E-100 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 SMART SM00387 29 173 1.4E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF56719 391 557 2.28E-85 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF56719 727 792 2.28E-85 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PANTHER PTHR10169 721 801 2.7E-295 T 23-04-2016 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PANTHER PTHR10169 2 550 2.7E-295 T 23-04-2016 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 309 325 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 193 206 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 217 239 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 178 193 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 3 13 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 754 766 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 371 391 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 770 786 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 357 371 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 467 476 5.3E-76 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.30.565.10 3 215 1.8E-89 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF01751 Toprim domain 416 528 3.9E-18 T 23-04-2016 IPR006171 Toprim domain THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 SMART SM00433 33 794 1.2E-264 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 3 801 0.0 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 171 5.6E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF54211 218 389 8.16E-59 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS03225 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 729 790 7.5E-31 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 Gene3D G3DSA:3.30.930.10 9 215 1.2E-103 T 23-04-2016 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 60.913 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 Gene3D G3DSA:1.20.58.180 217 298 8.6E-38 T 23-04-2016 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 SUPERFAMILY SSF55681 10 292 2.65E-133 T 23-04-2016 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 292 4.8E-151 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 300 1.3E-161 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 3.7E-68 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 3.7E-68 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 3.7E-68 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 3.7E-68 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 3.7E-68 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 3.7E-68 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17505 3186fe9af31443c643c9074cb4cfeaa8 302 PANTHER PTHR30075 10 300 1.7E-245 T 23-04-2016 THIMO_RS07050 d7a2a73fe6bdb65d98b49bea14e74298 110 PIRSF PIRSF028538 1 109 7.7E-43 T 23-04-2016 IPR014949 Protein of unknown function DUF1820 THIMO_RS07050 d7a2a73fe6bdb65d98b49bea14e74298 110 Pfam PF08850 Domain of unknown function (DUF1820) 3 98 1.3E-42 T 23-04-2016 IPR014949 Protein of unknown function DUF1820 THIMO_RS02640 52f8f166e5f328ea07248c72841e8fe2 147 Pfam PF09424 Yqey-like protein 4 145 9.1E-57 T 23-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial THIMO_RS02640 52f8f166e5f328ea07248c72841e8fe2 147 SUPERFAMILY SSF89095 2 145 2.25E-43 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 THIMO_RS02640 52f8f166e5f328ea07248c72841e8fe2 147 Gene3D G3DSA:1.10.10.410 90 145 6.9E-22 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal THIMO_RS02640 52f8f166e5f328ea07248c72841e8fe2 147 PANTHER PTHR28055 1 147 3.0E-53 T 23-04-2016 THIMO_RS02640 52f8f166e5f328ea07248c72841e8fe2 147 PANTHER PTHR28055:SF1 1 147 3.0E-53 T 23-04-2016 THIMO_RS02640 52f8f166e5f328ea07248c72841e8fe2 147 Gene3D G3DSA:1.10.1510.10 2 89 5.8E-35 T 23-04-2016 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 4 389 6.6E-126 T 23-04-2016 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: REACT_13433|UniPathway: UPA00140 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 SUPERFAMILY SSF88697 1 171 9.94E-43 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 SUPERFAMILY SSF52374 175 392 8.44E-78 T 23-04-2016 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 PANTHER PTHR11055:SF19 9 394 2.7E-120 T 23-04-2016 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 Gene3D G3DSA:3.40.50.620 187 393 6.1E-78 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 27 393 46.352 T 23-04-2016 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 Pfam PF01747 ATP-sulfurylase 178 389 4.4E-75 T 23-04-2016 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 PANTHER PTHR11055 9 394 2.7E-120 T 23-04-2016 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 Pfam PF14306 PUA-like domain 2 165 5.5E-36 T 23-04-2016 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 THIMO_RS09320 9d1df075ecf120caa79e330bfeb7e5fe 395 Gene3D G3DSA:3.10.400.10 1 186 2.3E-47 T 23-04-2016 THIMO_RS00605 36029fbd30ffdab9c34793c765a0d8e3 527 PANTHER PTHR33908 16 441 2.6E-69 T 23-04-2016 THIMO_RS00605 36029fbd30ffdab9c34793c765a0d8e3 527 PANTHER PTHR33908:SF3 16 441 2.6E-69 T 23-04-2016 THIMO_RS00605 36029fbd30ffdab9c34793c765a0d8e3 527 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 68 227 2.0E-21 T 23-04-2016 THIMO_RS16090 2a4be43596dc136324068020be181418 62 Pfam PF03966 Trm112p-like protein 2 41 4.2E-13 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 THIMO_RS16090 2a4be43596dc136324068020be181418 62 SUPERFAMILY SSF158997 1 54 1.83E-21 T 23-04-2016 THIMO_RS16090 2a4be43596dc136324068020be181418 62 Gene3D G3DSA:2.20.25.10 8 58 7.7E-26 T 23-04-2016 THIMO_RS16090 2a4be43596dc136324068020be181418 62 PANTHER PTHR33505 1 58 6.9E-25 T 23-04-2016 THIMO_RS16090 2a4be43596dc136324068020be181418 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 28.083 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 THIMO_RS15210 60c3e9f605affcdbf6af659e72822046 169 PANTHER PTHR12302:SF0 28 166 2.7E-30 T 23-04-2016 THIMO_RS15210 60c3e9f605affcdbf6af659e72822046 169 Gene3D G3DSA:2.40.50.90 27 146 8.7E-24 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold THIMO_RS15210 60c3e9f605affcdbf6af659e72822046 169 SUPERFAMILY SSF50199 26 146 2.35E-30 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold THIMO_RS15210 60c3e9f605affcdbf6af659e72822046 169 SMART SM00318 24 146 5.9E-15 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold THIMO_RS15210 60c3e9f605affcdbf6af659e72822046 169 PANTHER PTHR12302 28 166 2.7E-30 T 23-04-2016 THIMO_RS15210 60c3e9f605affcdbf6af659e72822046 169 Pfam PF00565 Staphylococcal nuclease homologue 51 145 3.2E-17 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 PANTHER PTHR23305 1 363 1.8E-205 T 23-04-2016 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.981 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 SUPERFAMILY SSF81271 279 360 7.41E-36 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:3.40.50.300 4 130 3.8E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:3.40.50.300 201 266 3.8E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 PIRSF PIRSF006641 1 363 1.3E-153 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.8E-40 T 23-04-2016 IPR013029 Domain of unknown function DUF933 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 SUPERFAMILY SSF52540 3 300 1.44E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 5.0E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 5.0E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.0E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 5.0E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:1.10.150.300 131 200 2.5E-23 T 23-04-2016 IPR023192 TGS-like domain THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.8E-156 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:3.10.20.30 267 363 2.3E-49 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS07680 c491a52acf530d0472b8a4744b71b542 363 Pfam PF01926 50S ribosome-binding GTPase 5 115 1.3E-22 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 Pfam PF00164 Ribosomal protein S12/S23 4 123 3.2E-42 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PANTHER PTHR11652 1 116 6.7E-72 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.058 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PIRSF PIRSF002133 1 124 2.3E-53 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.4E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.4E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.4E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.4E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.4E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.4E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 Gene3D G3DSA:2.40.50.140 1 123 5.5E-64 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 4.3E-69 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 THIMO_RS13655 3316964909b4dd525478cd4f490fec5e 124 SUPERFAMILY SSF50249 3 123 1.03E-50 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 211 2.2E-78 T 23-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 Gene3D G3DSA:3.30.160.40 220 303 2.8E-27 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 44 64 1.0E-47 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 75 94 1.0E-47 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 142 159 1.0E-47 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 123 140 1.0E-47 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 229 246 1.0E-47 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PANTHER PTHR11557 1 307 2.7E-151 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 Gene3D G3DSA:3.40.190.10 3 109 1.2E-46 T 23-04-2016 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PANTHER PTHR11557:SF0 1 307 2.7E-151 T 23-04-2016 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 296 6.3E-111 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 230 246 - T 23-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 PIRSF PIRSF001438 1 308 4.1E-119 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 SUPERFAMILY SSF54782 219 305 2.48E-26 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 Gene3D G3DSA:3.40.190.10 110 198 5.7E-39 T 23-04-2016 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 294 8.0E-20 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 296 38.547 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06510 8f20d3c90e900c427a3a75fd0bd35451 308 SUPERFAMILY SSF53850 4 217 6.73E-82 T 23-04-2016 THIMO_RS09815 59378ba2e4ad8201e5409399bada7f44 69 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 1.3E-12 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain THIMO_RS09815 59378ba2e4ad8201e5409399bada7f44 69 PANTHER PTHR37424:SF1 2 55 1.3E-12 T 23-04-2016 THIMO_RS09815 59378ba2e4ad8201e5409399bada7f44 69 PANTHER PTHR37424 2 55 1.3E-12 T 23-04-2016 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.86 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 23-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 PANTHER PTHR11880 2 91 8.1E-50 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.9E-22 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.9E-22 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.9E-22 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 PIRSF PIRSF002144 1 92 3.9E-32 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 SUPERFAMILY SSF54570 3 84 6.28E-35 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 1.2E-43 T 23-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 Gene3D G3DSA:3.30.860.10 2 91 1.3E-39 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 THIMO_RS13610 31ce661e7a95a0451adae7802a030d42 92 Pfam PF00203 Ribosomal protein S19 3 83 1.4E-36 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Pfam PF06421 GTP-binding protein LepA C-terminus 489 595 1.4E-50 T 23-04-2016 IPR013842 GTP-binding protein LepA, C-terminal THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Gene3D G3DSA:3.30.70.870 294 371 5.4E-24 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PRINTS PR00315 GTP-binding elongation factor signature 129 138 8.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PRINTS PR00315 GTP-binding elongation factor signature 93 104 8.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PRINTS PR00315 GTP-binding elongation factor signature 77 87 8.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PRINTS PR00315 GTP-binding elongation factor signature 9 22 8.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PRINTS PR00315 GTP-binding elongation factor signature 52 60 8.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 297.959 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 SUPERFAMILY SSF54980 294 372 1.51E-17 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS08735 e2bcb9df74d314391410419963091824 600 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 176 8.4E-19 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 1.3E-49 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Gene3D G3DSA:2.40.30.10 196 286 2.7E-20 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PANTHER PTHR23115 1 375 6.1E-275 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PANTHER PTHR23115 399 597 6.1E-275 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Gene3D G3DSA:3.40.50.300 4 195 2.6E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PANTHER PTHR23115:SF175 1 375 6.1E-275 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 PANTHER PTHR23115:SF175 399 597 6.1E-275 T 23-04-2016 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 3.5E-291 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 THIMO_RS08735 e2bcb9df74d314391410419963091824 600 SMART SM00838 400 488 0.0023 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS08735 e2bcb9df74d314391410419963091824 600 SUPERFAMILY SSF52540 2 233 4.78E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Gene3D G3DSA:3.30.70.240 403 491 1.4E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS08735 e2bcb9df74d314391410419963091824 600 SUPERFAMILY SSF54980 401 495 3.88E-23 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS08735 e2bcb9df74d314391410419963091824 600 Pfam PF00679 Elongation factor G C-terminus 401 486 1.1E-19 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.30.499.10 27 243 1.9E-75 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 Pfam PF00694 Aconitase C-terminal domain 687 813 3.7E-46 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 30 884 0.0 T 23-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670 412 646 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670 1 388 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670 662 707 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670 746 886 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.30.499.10 364 571 4.8E-63 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670:SF1 412 646 0.0 T 23-04-2016 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670:SF1 1 388 0.0 T 23-04-2016 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670:SF1 662 707 0.0 T 23-04-2016 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PANTHER PTHR11670:SF1 746 886 0.0 T 23-04-2016 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 Pfam PF00330 Aconitase family (aconitate hydratase) 71 558 7.9E-180 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.20.19.10 632 884 1.2E-78 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 SUPERFAMILY SSF53732 4 623 4.84E-219 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.40.1060.10 244 362 1.4E-37 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 140 153 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 211 226 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 427 438 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 287 300 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 273 286 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 489 502 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 164 172 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 367 381 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 197 210 2.1E-40 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 SUPERFAMILY SSF52016 631 884 1.41E-84 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS07030 039625465d1dcade2cec0dfbfc23c07c 886 ProSitePatterns PS00450 Aconitase family signature 1. 423 439 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 SUPERFAMILY SSF81343 1 121 2.83E-24 T 23-04-2016 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 PANTHER PTHR10978:SF4 1 120 5.6E-24 T 23-04-2016 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 PIRSF PIRSF000178 1 124 4.1E-24 T 23-04-2016 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 4 118 8.9E-32 T 23-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 Gene3D G3DSA:1.20.1300.10 2 122 2.0E-31 T 23-04-2016 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 PANTHER PTHR10978 1 120 5.6E-24 T 23-04-2016 THIMO_RS02195 b7d634f5fa795e9e0a915b997b2500ef 125 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1 118 2.0E-25 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 359 7.9E-28 T 23-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 SMART SM00382 37 178 5.0E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 441 554 6.3E-13 T 23-04-2016 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 PANTHER PTHR11669:SF0 1 413 4.7E-167 T 23-04-2016 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 SUPERFAMILY SSF48019 244 361 2.72E-30 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 Gene3D G3DSA:3.40.50.300 15 166 1.4E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 8.7E-6 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 8.7E-6 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 SUPERFAMILY SSF52540 32 221 8.23E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 Gene3D G3DSA:1.10.8.60 167 242 1.8E-29 T 23-04-2016 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 PANTHER PTHR11669 1 413 4.7E-167 T 23-04-2016 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 Gene3D G3DSA:1.20.272.10 243 360 2.6E-38 T 23-04-2016 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 4.8E-124 T 23-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 THIMO_RS09595 daf299f6407f0d7571671333abe4f69b 564 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.6E-41 T 23-04-2016 THIMO_RS14565 4a6ea2b002c7f1df8a8d1ea413afbbb9 72 Pfam PF13007 Transposase C of IS166 homeodomain 28 67 4.3E-8 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 369 393 - T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 434 449 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 51 76 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 457 474 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 269 288 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 123 141 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 369 387 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 239 255 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 141 160 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 393 411 9.8E-65 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 Pfam PF01019 Gamma-glutamyltranspeptidase 44 551 2.5E-146 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 PANTHER PTHR11686 23 562 9.6E-172 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 31 549 7.8E-125 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 THIMO_RS12340 1d476e37ef41ea8486d23e6190469f23 563 SUPERFAMILY SSF56235 21 555 8.1E-158 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS08230 14f9a8732f60b41a0794327c8d89763e 112 Pfam PF03413 Peptidase propeptide and YPEB domain 53 110 1.6E-6 T 23-04-2016 IPR025711 PepSY domain THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 SUPERFAMILY SSF51556 7 256 4.61E-78 T 23-04-2016 IPR032466 Metal-dependent hydrolase THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 Pfam PF01026 TatD related DNase 8 255 3.6E-65 T 23-04-2016 IPR001130 TatD family GO:0016788 THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 Gene3D G3DSA:3.20.20.140 5 256 7.1E-79 T 23-04-2016 THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 PIRSF PIRSF005902 1 257 2.6E-64 T 23-04-2016 IPR001130 TatD family GO:0016788 THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 7 15 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 THIMO_RS09375 ad474f355549457f7024d63906cc0d64 257 PANTHER PTHR10060 7 257 1.3E-77 T 23-04-2016 IPR001130 TatD family GO:0016788 THIMO_RS10665 b122146197043c9d78ac19a7294ca140 172 Gene3D G3DSA:1.10.287.950 72 161 1.2E-4 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:2.40.30.10 1 91 7.1E-18 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 311 416 4.2E-39 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF51971 433 684 7.06E-64 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 PANTHER PTHR11938 315 755 1.3E-134 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.50.50.60 524 684 1.4E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF52343 89 248 1.26E-32 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF63380 1 91 5.29E-16 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 PANTHER PTHR11938:SF90 315 755 1.3E-134 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 PRINTS PR00419 Adrenodoxin reductase family signature 456 469 2.6E-16 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 PRINTS PR00419 Adrenodoxin reductase family signature 575 589 2.6E-16 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 PRINTS PR00419 Adrenodoxin reductase family signature 433 455 2.6E-16 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 433 742 9.7E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 308 755 2.5E-154 T 23-04-2016 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.40.50.80 98 210 1.2E-32 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:1.10.1060.10 298 434 2.1E-40 T 23-04-2016 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:1.20.1260.10 860 998 5.3E-27 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:2.20.28.10 821 845 7.6E-4 T 23-04-2016 IPR004039 Rubredoxin-type fold THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF47240 861 1001 3.08E-23 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF46548 297 442 1.78E-29 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.40.50.720 435 523 1.3E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.40.50.720 685 760 1.3E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07585 a7ec1acaadd47cb418e3ee3a609de27d 1006 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 212 249 3.1E-11 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 Pfam PF13740 ACT domain 7 80 5.4E-23 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 Gene3D G3DSA:3.30.70.260 6 83 8.8E-25 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 SUPERFAMILY SSF55021 92 176 5.15E-18 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 Gene3D G3DSA:3.30.70.260 92 178 1.6E-27 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 PANTHER PTHR34875:SF3 7 179 4.2E-59 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 SUPERFAMILY SSF55021 5 84 5.73E-16 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 PANTHER PTHR34875 7 179 4.2E-59 T 23-04-2016 THIMO_RS14110 90195377f47534eb749514853fc88c8c 179 PIRSF PIRSF028103 4 179 5.3E-58 T 23-04-2016 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 81 238 1.5E-41 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 PANTHER PTHR10799 115 238 6.1E-23 T 23-04-2016 THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 PANTHER PTHR10799 1 77 6.1E-23 T 23-04-2016 THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 SUPERFAMILY SSF55073 89 238 4.12E-37 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 Pfam PF00990 Diguanylate cyclase, GGDEF domain 82 235 1.3E-35 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 SMART SM00267 71 239 3.0E-36 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 PANTHER PTHR10799:SF750 115 238 6.1E-23 T 23-04-2016 THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 PANTHER PTHR10799:SF750 1 77 6.1E-23 T 23-04-2016 THIMO_RS02995 45813c3d656f883f0e904c23b1452528 239 Gene3D G3DSA:3.30.70.270 84 238 4.0E-42 T 23-04-2016 THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 Pfam PF00675 Insulinase (Peptidase family M16) 37 151 2.2E-10 T 23-04-2016 IPR011765 Peptidase M16, N-terminal THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 PANTHER PTHR11851 34 434 6.7E-77 T 23-04-2016 THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 Gene3D G3DSA:3.30.830.10 27 239 2.5E-39 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 Pfam PF05193 Peptidase M16 inactive domain 192 364 3.1E-29 T 23-04-2016 IPR007863 Peptidase M16, C-terminal THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 SUPERFAMILY SSF63411 25 230 1.07E-41 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 PANTHER PTHR11851:SF140 34 434 6.7E-77 T 23-04-2016 THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 SUPERFAMILY SSF63411 257 439 4.94E-43 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 THIMO_RS17210 85b92830dd1443137e40a95d9e2e7af4 448 Gene3D G3DSA:3.30.830.10 260 434 1.5E-28 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 Gene3D G3DSA:3.40.50.620 20 305 7.1E-111 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 SMART SM00840 340 401 2.2E-27 T 23-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 PANTHER PTHR10890 1 464 5.2E-246 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 464 6.4E-173 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 SUPERFAMILY SSF52374 2 313 4.61E-101 T 23-04-2016 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 SUPERFAMILY SSF47323 316 464 3.4E-38 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 313 2.5E-130 T 23-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 1.2E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.2E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.2E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 1.2E-30 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 Pfam PF09190 DALR domain 340 401 1.2E-21 T 23-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 Gene3D G3DSA:1.20.120.640 306 391 6.6E-25 T 23-04-2016 THIMO_RS01590 65dd2fa3622875f505eaf3f4fe506955 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 465 39.45 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 THIMO_RS06035 755e951efca331cf88954ec0544a6508 240 SUPERFAMILY SSF53955 39 166 4.44E-36 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS06035 755e951efca331cf88954ec0544a6508 240 Gene3D G3DSA:1.10.530.10 42 166 6.6E-38 T 23-04-2016 THIMO_RS06035 755e951efca331cf88954ec0544a6508 240 PANTHER PTHR21666 28 168 1.2E-28 T 23-04-2016 THIMO_RS06035 755e951efca331cf88954ec0544a6508 240 Pfam PF01464 Transglycosylase SLT domain 48 154 1.5E-28 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS06035 755e951efca331cf88954ec0544a6508 240 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 64 92 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 Pfam PF02743 Cache domain 37 261 1.6E-16 T 23-04-2016 IPR033479 Double Cache domain 1 THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 Pfam PF00990 Diguanylate cyclase, GGDEF domain 309 464 1.1E-42 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 SUPERFAMILY SSF55073 314 465 3.61E-44 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 Gene3D G3DSA:3.30.450.20 151 268 3.3E-11 T 23-04-2016 THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 PANTHER PTHR10799 190 466 6.7E-28 T 23-04-2016 THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 Gene3D G3DSA:3.30.70.270 311 466 2.1E-49 T 23-04-2016 THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 SMART SM00267 298 466 1.7E-53 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 PANTHER PTHR10799:SF750 190 466 6.7E-28 T 23-04-2016 THIMO_RS15020 578154edc0bb3f4985958ecf4f2df751 466 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 305 465 9.4E-47 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:1.10.268.10 363 497 9.9E-48 T 23-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:3.90.199.10 34 216 2.1E-86 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 SMART SM00434 11 499 2.2E-292 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 PANTHER PTHR10169 3 417 0.0 T 23-04-2016 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 PANTHER PTHR10169 450 813 0.0 T 23-04-2016 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 2.2E-153 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 SUPERFAMILY SSF101904 533 851 6.41E-107 T 23-04-2016 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 PANTHER PTHR10169:SF48 3 417 0.0 T 23-04-2016 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 PANTHER PTHR10169:SF48 450 813 0.0 T 23-04-2016 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 585 4.0E-7 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 787 3.0E-13 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 2.9E-10 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 738 2.4E-13 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 9.0E-10 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 792 837 1.6E-8 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:3.30.1360.40 236 333 2.3E-38 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 SUPERFAMILY SSF56719 30 521 6.93E-184 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 838 0.0 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:2.120.10.90 531 838 1.1E-128 T 23-04-2016 THIMO_RS06220 a506e447e09cc539262edec1496bd85b 859 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 842 29.805 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 214 8.2E-75 T 23-04-2016 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67 THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 216 39.494 T 23-04-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67 THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 Gene3D G3DSA:3.40.50.150 16 214 1.4E-60 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 SUPERFAMILY SSF53335 1 214 1.9E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 PANTHER PTHR10259:SF16 1 217 2.9E-85 T 23-04-2016 THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 PANTHER PTHR10259 1 217 2.9E-85 T 23-04-2016 THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 214 1.4E-80 T 23-04-2016 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 THIMO_RS04075 1feac6571ad5c73e8a99c62cd090959c 218 PIRSF PIRSF023956 1 217 1.2E-75 T 23-04-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PANTHER PTHR30330 1 446 1.1E-212 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PANTHER PTHR30330:SF3 1 446 1.1E-212 T 23-04-2016 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 441 2.2E-155 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 410 430 5.7E-55 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 307 325 5.7E-55 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 212 231 5.7E-55 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 184 202 5.7E-55 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 351 373 5.7E-55 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 91 113 5.7E-55 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS07035 de0cbcdc83e6e342d30e7ec111aa98d1 446 Pfam PF01235 Sodium:alanine symporter family 59 445 5.5E-141 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 PANTHER PTHR11070 213 675 5.7E-51 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 Pfam PF00580 UvrD/REP helicase N-terminal domain 232 382 7.7E-10 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 Pfam PF00580 UvrD/REP helicase N-terminal domain 431 473 8.2E-5 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 SUPERFAMILY SSF52540 221 677 5.46E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 Pfam PF13361 UvrD-like helicase C-terminal domain 602 672 1.5E-15 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 Gene3D G3DSA:3.40.50.300 499 684 1.8E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 SUPERFAMILY SSF143011 1 81 1.96E-6 T 23-04-2016 THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 Gene3D G3DSA:3.40.50.300 408 498 3.8E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16250 63abfa4b73b1806bc2b5159b2ad93f47 686 Gene3D G3DSA:3.40.50.300 230 334 3.8E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03920 657c6c868a3f60fdd36484eac82cf6af 153 PANTHER PTHR23091 1 153 1.2E-16 T 23-04-2016 THIMO_RS03920 657c6c868a3f60fdd36484eac82cf6af 153 Gene3D G3DSA:3.40.630.30 2 153 9.0E-36 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS03920 657c6c868a3f60fdd36484eac82cf6af 153 SUPERFAMILY SSF55729 2 153 5.85E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS03920 657c6c868a3f60fdd36484eac82cf6af 153 Pfam PF13673 Acetyltransferase (GNAT) domain 28 151 1.9E-15 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS11560 eaa39797734fba08cbe02381bdbe9bad 402 SUPERFAMILY SSF56300 14 294 1.74E-46 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS11560 eaa39797734fba08cbe02381bdbe9bad 402 PANTHER PTHR30337 15 260 2.0E-54 T 23-04-2016 THIMO_RS11560 eaa39797734fba08cbe02381bdbe9bad 402 Pfam PF00149 Calcineurin-like phosphoesterase 24 182 5.3E-9 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 THIMO_RS11560 eaa39797734fba08cbe02381bdbe9bad 402 PANTHER PTHR30337:SF7 15 260 2.0E-54 T 23-04-2016 THIMO_RS11560 eaa39797734fba08cbe02381bdbe9bad 402 Gene3D G3DSA:3.60.21.10 13 224 2.4E-37 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS11560 eaa39797734fba08cbe02381bdbe9bad 402 PIRSF PIRSF033091 1 398 6.0E-92 T 23-04-2016 IPR014576 Predicted phosphoesterase, YhaO type THIMO_RS05875 0b47d3a4c26603dc255ed62881c8bd16 389 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 283 4.9E-22 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS05875 0b47d3a4c26603dc255ed62881c8bd16 389 Gene3D G3DSA:2.40.50.100 192 224 1.8E-14 T 23-04-2016 THIMO_RS05875 0b47d3a4c26603dc255ed62881c8bd16 389 Gene3D G3DSA:2.40.50.100 85 117 1.8E-14 T 23-04-2016 THIMO_RS05875 0b47d3a4c26603dc255ed62881c8bd16 389 SUPERFAMILY SSF111369 73 304 1.12E-22 T 23-04-2016 THIMO_RS05875 0b47d3a4c26603dc255ed62881c8bd16 389 PANTHER PTHR30469 14 388 2.1E-70 T 23-04-2016 THIMO_RS05875 0b47d3a4c26603dc255ed62881c8bd16 389 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 60 384 3.4E-67 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PANTHER PTHR10458 1 167 2.1E-89 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.605 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 Gene3D G3DSA:3.90.45.10 5 168 1.2E-66 T 23-04-2016 IPR023635 Peptide deformylase THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PIRSF PIRSF004749 1 173 3.1E-55 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 Pfam PF01327 Polypeptide deformylase 5 152 2.8E-51 T 23-04-2016 IPR023635 Peptide deformylase THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 SUPERFAMILY SSF56420 3 164 3.01E-64 T 23-04-2016 IPR023635 Peptide deformylase THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 160 8.0E-58 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 33 62 2.5E-37 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 120 149 2.5E-37 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 89 100 2.5E-37 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 101 119 2.5E-37 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS05960 ffd7d1280342181528158c4e4613aa15 178 PANTHER PTHR10458:SF10 1 167 2.1E-89 T 23-04-2016 THIMO_RS12945 92b70d99a84b351f843d48228d733faa 527 PANTHER PTHR23293:SF6 38 243 1.4E-18 T 23-04-2016 THIMO_RS12945 92b70d99a84b351f843d48228d733faa 527 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 60 242 3.3E-8 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 THIMO_RS12945 92b70d99a84b351f843d48228d733faa 527 SUPERFAMILY SSF52402 35 247 5.35E-25 T 23-04-2016 THIMO_RS12945 92b70d99a84b351f843d48228d733faa 527 TIGRFAM TIGR03183 DNA_S_dndC: putative sulfurtransferase DndC 45 490 7.7E-191 T 23-04-2016 IPR017598 Sulphur transferase DndC, putative THIMO_RS12945 92b70d99a84b351f843d48228d733faa 527 Gene3D G3DSA:3.40.50.620 27 241 4.9E-25 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS12945 92b70d99a84b351f843d48228d733faa 527 PANTHER PTHR23293 38 243 1.4E-18 T 23-04-2016 THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 720 806 6.93E-18 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF00801 PKD domain 727 796 1.4E-9 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF00801 PKD domain 634 704 1.8E-9 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF00754 F5/8 type C domain 831 950 5.4E-10 T 23-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 154 243 1.5E-4 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 538 625 2.0E-10 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 722 809 2.0E-16 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 250 342 0.84 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 628 715 3.3E-15 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49785 830 952 1.01E-14 T 23-04-2016 IPR008979 Galactose-binding domain-like THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.670 542 625 2.3E-12 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.670 720 805 3.8E-16 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.670 626 714 6.6E-15 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF13860 FlgD Ig-like domain 1192 1261 5.8E-10 T 23-04-2016 IPR025965 FlgD Ig-like domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.670 158 241 3.9E-5 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.120.260 827 951 1.3E-16 T 23-04-2016 IPR008979 Galactose-binding domain-like THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.1560 441 531 7.1E-4 T 23-04-2016 THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 514 624 4.19E-15 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 624 713 2.75E-17 T 23-04-2016 IPR000601 PKD domain THIMO_RS18305 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 150 243 7.19E-9 T 23-04-2016 IPR000601 PKD domain THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 SUPERFAMILY SSF47413 9 83 3.44E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 SMART SM00530 12 68 7.9E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 Gene3D G3DSA:1.10.260.40 1 84 3.0E-31 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 PANTHER PTHR36924:SF2 1 91 2.8E-22 T 23-04-2016 THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 PANTHER PTHR36924 1 91 2.8E-22 T 23-04-2016 THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 3 82 4.2E-32 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 THIMO_RS00965 e922803f83bd2797b4bee7a112791193 93 Pfam PF01381 Helix-turn-helix 16 66 2.1E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 245 1.9E-30 T 23-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 SUPERFAMILY SSF55979 247 368 2.25E-31 T 23-04-2016 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 SMART SM00480 17 364 4.6E-105 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 PIRSF PIRSF000804 1 368 5.5E-103 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 SUPERFAMILY SSF55979 1 116 3.38E-21 T 23-04-2016 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 368 4.4E-94 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 Gene3D G3DSA:3.10.150.10 127 249 1.0E-29 T 23-04-2016 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 248 367 4.3E-30 T 23-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 Gene3D G3DSA:3.10.150.10 250 368 6.6E-32 T 23-04-2016 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 PANTHER PTHR30478 3 368 3.9E-112 T 23-04-2016 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 118 9.8E-28 T 23-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 SUPERFAMILY SSF55979 128 246 2.2E-22 T 23-04-2016 THIMO_RS00020 63cb495c31798add52ab80ce87a92d22 368 Gene3D G3DSA:3.10.150.10 1 118 5.2E-25 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 3 436 6.4E-183 T 23-04-2016 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0006461|GO:0009399 UniPathway: UPA00782 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 434 1.3E-111 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 PANTHER PTHR33712:SF2 9 207 1.0E-75 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 PANTHER PTHR33712:SF2 227 459 1.0E-75 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 PANTHER PTHR33712 9 207 1.0E-75 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 PANTHER PTHR33712 227 459 1.0E-75 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 Gene3D G3DSA:3.40.50.1980 168 268 3.5E-29 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 SUPERFAMILY SSF53807 6 437 3.92E-121 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 Gene3D G3DSA:3.40.50.1980 20 161 1.3E-39 T 23-04-2016 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS17320 006c5990e6eef00dacef30949f052955 461 Gene3D G3DSA:3.40.50.1980 297 410 1.0E-29 T 23-04-2016 THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 37 284 2.4E-88 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 Pfam PF07549 SecD/SecF GG Motif 32 57 5.5E-9 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 PANTHER PTHR30081 9 301 5.6E-91 T 23-04-2016 THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 Pfam PF02355 Protein export membrane protein 111 292 6.8E-72 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 Gene3D G3DSA:1.20.1640.10 128 292 2.1E-26 T 23-04-2016 THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 9 295 30.568 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 SUPERFAMILY SSF82866 76 292 3.66E-41 T 23-04-2016 THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 112 281 2.2E-58 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 36 51 1.5E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 152 166 1.5E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 200 218 1.5E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial THIMO_RS05055 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 232 247 1.5E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF55681 407 478 2.58E-105 T 23-04-2016 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF55681 10 237 2.58E-105 T 23-04-2016 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PANTHER PTHR11451:SF3 4 245 3.7E-157 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PANTHER PTHR11451:SF3 399 570 3.7E-157 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.40.50.800 473 571 7.9E-29 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.30.930.10 389 472 3.0E-106 T 23-04-2016 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.30.930.10 10 234 3.0E-106 T 23-04-2016 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF55826 218 390 1.83E-30 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.90.960.10 254 388 3.9E-28 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 6.9E-19 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 6.9E-19 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.9E-19 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.9E-19 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 9.7E-47 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PIRSF PIRSF001535 1 573 1.6E-270 T 23-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PANTHER PTHR11451 4 245 3.7E-157 T 23-04-2016 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 PANTHER PTHR11451 399 570 3.7E-157 T 23-04-2016 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF52954 464 570 1.59E-30 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Pfam PF03129 Anticodon binding domain 476 568 9.3E-18 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.503 T 23-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 566 3.5E-246 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 THIMO_RS09200 39571c4f42fbc55dc16f6193ba6799d9 573 Pfam PF04073 Aminoacyl-tRNA editing domain 257 378 5.5E-23 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 Pfam PF04055 Radical SAM superfamily 10 173 5.8E-24 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 SUPERFAMILY SSF102114 5 339 7.98E-54 T 23-04-2016 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 Gene3D G3DSA:3.20.20.70 5 339 2.3E-55 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 PANTHER PTHR11228 5 339 2.8E-41 T 23-04-2016 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 SMART SM00729 4 215 2.5E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 Pfam PF13186 Iron-sulfur cluster-binding domain 259 337 2.0E-6 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 PANTHER PTHR11228:SF7 5 339 2.8E-41 T 23-04-2016 THIMO_RS18070 a10dc9d01224dc96f9e5eec165a35a3e 505 Pfam PF13353 4Fe-4S single cluster domain 10 119 1.9E-7 T 23-04-2016 THIMO_RS05760 c0a8f1dd1d2ce5f8421dab5defd4062f 210 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 7 191 1.2E-82 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 THIMO_RS05760 c0a8f1dd1d2ce5f8421dab5defd4062f 210 SUPERFAMILY SSF52540 21 194 4.13E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05760 c0a8f1dd1d2ce5f8421dab5defd4062f 210 Gene3D G3DSA:3.40.50.300 2 198 3.3E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05760 c0a8f1dd1d2ce5f8421dab5defd4062f 210 Pfam PF01583 Adenylylsulphate kinase 24 177 2.1E-74 T 23-04-2016 THIMO_RS05760 c0a8f1dd1d2ce5f8421dab5defd4062f 210 PANTHER PTHR11055 1 198 8.2E-131 T 23-04-2016 THIMO_RS05760 c0a8f1dd1d2ce5f8421dab5defd4062f 210 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 23 195 39.228 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 THIMO_RS15030 8fa3aa394b233414223f0481fabd7153 224 Gene3D G3DSA:3.40.50.850 8 220 2.0E-58 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 THIMO_RS15030 8fa3aa394b233414223f0481fabd7153 224 Pfam PF00857 Isochorismatase family 28 215 6.3E-34 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 THIMO_RS15030 8fa3aa394b233414223f0481fabd7153 224 PANTHER PTHR11080 3 221 1.8E-44 T 23-04-2016 THIMO_RS15030 8fa3aa394b233414223f0481fabd7153 224 PANTHER PTHR11080:SF19 3 221 1.8E-44 T 23-04-2016 THIMO_RS15030 8fa3aa394b233414223f0481fabd7153 224 SUPERFAMILY SSF52499 8 221 3.53E-50 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 THIMO_RS12000 033532974f74729b8b3222de73c4c83a 169 PANTHER PTHR33202:SF6 1 157 2.1E-62 T 23-04-2016 THIMO_RS12000 033532974f74729b8b3222de73c4c83a 169 Pfam PF01475 Ferric uptake regulator family 19 132 9.2E-16 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 THIMO_RS12000 033532974f74729b8b3222de73c4c83a 169 SUPERFAMILY SSF46785 14 143 3.03E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12000 033532974f74729b8b3222de73c4c83a 169 Gene3D G3DSA:1.10.10.10 14 80 7.9E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12000 033532974f74729b8b3222de73c4c83a 169 PANTHER PTHR33202 1 157 2.1E-62 T 23-04-2016 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 Gene3D G3DSA:3.30.70.60 1 102 1.4E-38 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.519 T 23-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 SUPERFAMILY SSF54995 1 102 4.32E-35 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 PANTHER PTHR21011 1 123 1.7E-36 T 23-04-2016 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 Pfam PF01250 Ribosomal protein S6 3 91 9.1E-25 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 6.0E-32 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS07220 14145cc0d4e1fa7129df98552ca567fe 123 PANTHER PTHR21011:SF1 1 123 1.7E-36 T 23-04-2016 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 PANTHER PTHR10277 1 511 1.1E-251 T 23-04-2016 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 Pfam PF00682 HMGL-like 7 275 1.7E-97 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 SUPERFAMILY SSF110921 393 502 5.49E-26 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 14 30 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 201 214 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 Gene3D G3DSA:3.20.20.70 4 348 2.3E-149 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 SUPERFAMILY SSF51569 4 293 3.81E-100 T 23-04-2016 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 SMART SM00917 372 503 1.6E-40 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 503 1.0E-36 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 PANTHER PTHR10277:SF9 1 511 1.1E-251 T 23-04-2016 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 7 500 1.1E-218 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS16005 f5bf17503c744b90c159b781f9e97cbd 516 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 4 512 43.869 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS15245 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 Gene3D G3DSA:3.40.50.700 43 168 1.8E-30 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15245 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 PANTHER PTHR11995 19 166 1.1E-54 T 23-04-2016 THIMO_RS15245 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 PANTHER PTHR11995:SF3 19 166 1.1E-54 T 23-04-2016 THIMO_RS15245 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 55 165 2.7E-26 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15245 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 SUPERFAMILY SSF56770 43 167 1.18E-49 T 23-04-2016 THIMO_RS11410 df343765982eb18586692f779a46c353 431 Pfam PF00709 Adenylosuccinate synthetase 5 423 1.3E-171 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 PANTHER PTHR11846 1 428 1.0E-240 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:3.90.170.10 267 425 6.0E-67 T 23-04-2016 THIMO_RS11410 df343765982eb18586692f779a46c353 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 207.388 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:1.10.300.10 103 194 7.8E-35 T 23-04-2016 THIMO_RS11410 df343765982eb18586692f779a46c353 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 23-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 SUPERFAMILY SSF52540 3 429 1.38E-172 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11410 df343765982eb18586692f779a46c353 431 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 23-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 2.7E-181 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 SMART SM00788 4 424 1.6E-282 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 THIMO_RS11410 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:3.40.440.10 3 94 2.1E-65 T 23-04-2016 THIMO_RS11410 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:3.40.440.10 195 266 2.1E-65 T 23-04-2016 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 SUPERFAMILY SSF110324 2 80 9.42E-33 T 23-04-2016 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-14 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 3.7E-40 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 23-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.6E-37 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 PANTHER PTHR15893 1 83 2.8E-46 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.2E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.2E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.2E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.541 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06295 c4fd691b709b420f5f2941240c2129c3 85 Gene3D G3DSA:2.40.50.100 20 81 3.1E-29 T 23-04-2016 THIMO_RS15460 cecb0112a923a252d1f511264f78d6a1 92 SUPERFAMILY SSF54862 5 61 2.93E-13 T 23-04-2016 THIMO_RS15460 cecb0112a923a252d1f511264f78d6a1 92 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS15460 cecb0112a923a252d1f511264f78d6a1 92 Gene3D G3DSA:3.30.70.20 7 60 3.9E-12 T 23-04-2016 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF54814 285 349 9.81E-16 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 PANTHER PTHR22648 1 453 1.4E-172 T 23-04-2016 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SMART SM00316 139 206 3.1E-6 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 416 29.572 T 23-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:3.30.1480.10 1 130 8.9E-45 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:2.40.50.140 135 204 6.9E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF69705 1 131 5.49E-39 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:3.30.300.20 284 352 4.4E-29 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF47794 361 422 3.61E-13 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 348 3.1E-123 T 23-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 PANTHER PTHR22648:SF0 1 453 1.4E-172 T 23-04-2016 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:3.30.300.20 205 283 7.7E-34 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SMART SM00322 236 299 11.0 T 23-04-2016 IPR004087 K Homology domain GO:0003676 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SMART SM00322 307 363 0.045 T 23-04-2016 IPR004087 K Homology domain GO:0003676 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Pfam PF13184 NusA-like KH domain 236 303 4.1E-28 T 23-04-2016 IPR025249 KH domain, NusA-like GO:0003723 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF54814 206 284 8.5E-30 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 445 494 7.9E-20 T 23-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF47794 435 496 2.51E-17 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Pfam PF08529 NusA N-terminal domain 4 129 3.3E-37 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Pfam PF14520 Helix-hairpin-helix domain 437 492 4.3E-10 T 23-04-2016 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF50249 138 205 1.95E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:1.10.150.20 361 426 4.6E-17 T 23-04-2016 THIMO_RS03360 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:1.10.150.20 435 496 1.9E-23 T 23-04-2016 THIMO_RS06975 60de4967eff9202ac844a7e5931a5568 402 PANTHER PTHR12526 12 397 1.7E-90 T 23-04-2016 THIMO_RS06975 60de4967eff9202ac844a7e5931a5568 402 Gene3D G3DSA:3.40.50.2000 187 362 6.7E-24 T 23-04-2016 THIMO_RS06975 60de4967eff9202ac844a7e5931a5568 402 PANTHER PTHR12526:SF363 12 397 1.7E-90 T 23-04-2016 THIMO_RS06975 60de4967eff9202ac844a7e5931a5568 402 Pfam PF13439 Glycosyltransferase Family 4 23 192 2.6E-25 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS06975 60de4967eff9202ac844a7e5931a5568 402 Pfam PF13692 Glycosyl transferases group 1 215 349 5.8E-27 T 23-04-2016 THIMO_RS06975 60de4967eff9202ac844a7e5931a5568 402 SUPERFAMILY SSF53756 13 386 2.54E-74 T 23-04-2016 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 SUPERFAMILY SSF103190 212 319 5.41E-23 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 SUPERFAMILY SSF55073 370 524 1.94E-46 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 Gene3D G3DSA:3.30.450.20 213 321 2.5E-24 T 23-04-2016 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 520 2.2E-43 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 SUPERFAMILY SSF103190 35 204 3.4E-43 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 525 5.8E-47 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 Gene3D G3DSA:3.30.70.270 367 525 1.9E-51 T 23-04-2016 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 Pfam PF02743 Cache domain 35 233 5.6E-12 T 23-04-2016 IPR033479 Double Cache domain 1 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 PANTHER PTHR10799 321 521 7.2E-30 T 23-04-2016 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 PANTHER PTHR10799:SF774 321 521 7.2E-30 T 23-04-2016 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 Gene3D G3DSA:3.30.450.20 73 204 1.5E-38 T 23-04-2016 THIMO_RS12850 89f59ce27710eb26e566a2ce80b9aceb 531 SMART SM00267 354 525 1.3E-54 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS13965 aeffb6f205df0c1821a3d8639c1656c0 262 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 69 257 1.1E-56 T 23-04-2016 THIMO_RS13965 aeffb6f205df0c1821a3d8639c1656c0 262 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 69 257 4.3E-56 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS13965 aeffb6f205df0c1821a3d8639c1656c0 262 PANTHER PTHR11579 69 256 1.3E-68 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS13965 aeffb6f205df0c1821a3d8639c1656c0 262 Gene3D G3DSA:3.40.50.150 68 257 1.0E-60 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS13965 aeffb6f205df0c1821a3d8639c1656c0 262 SUPERFAMILY SSF53335 66 256 1.41E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS13965 aeffb6f205df0c1821a3d8639c1656c0 262 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 37 260 36.901 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS17250 04195e9c1df09a838a5481525d3e4313 220 SUPERFAMILY SSF52540 8 218 1.35E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17250 04195e9c1df09a838a5481525d3e4313 220 Pfam PF03567 Sulfotransferase family 3 215 1.1E-11 T 23-04-2016 IPR005331 Sulfotransferase GO:0008146|GO:0016021 THIMO_RS17250 04195e9c1df09a838a5481525d3e4313 220 Gene3D G3DSA:3.40.50.300 54 169 3.4E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 SUPERFAMILY SSF52540 6 265 2.02E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 SMART SM00382 42 194 4.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 Gene3D G3DSA:1.10.101.10 498 565 1.2E-11 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 PANTHER PTHR35894:SF2 342 563 5.9E-103 T 23-04-2016 THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 PANTHER PTHR35894:SF2 315 324 5.9E-103 T 23-04-2016 THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 Pfam PF13401 AAA domain 42 171 9.9E-22 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 Gene3D G3DSA:3.40.50.300 26 184 2.6E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 PANTHER PTHR35894:SF2 2 292 5.9E-103 T 23-04-2016 THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 PANTHER PTHR35894 2 292 5.9E-103 T 23-04-2016 THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 PANTHER PTHR35894 342 563 5.9E-103 T 23-04-2016 THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 PANTHER PTHR35894 315 324 5.9E-103 T 23-04-2016 THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 SUPERFAMILY SSF47090 492 568 1.52E-13 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS09625 6158bf92f314cd2d69f8ee8d924b5383 579 Pfam PF01471 Putative peptidoglycan binding domain 506 561 5.3E-9 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 Gene3D G3DSA:3.30.1400.10 107 235 3.0E-38 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 107 233 2.7E-39 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 SMART SM00771 104 234 5.9E-27 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 PANTHER PTHR38685 97 246 4.7E-32 T 23-04-2016 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 PANTHER PTHR38685 9 80 4.7E-32 T 23-04-2016 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 PANTHER PTHR38685:SF1 97 246 4.7E-32 T 23-04-2016 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 PANTHER PTHR38685:SF1 9 80 4.7E-32 T 23-04-2016 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 107 234 2.0E-18 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 THIMO_RS04360 009e0318d9955e0d593ed86ac959a589 248 SUPERFAMILY SSF64383 107 238 1.7E-32 T 23-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Gene3D G3DSA:3.20.20.140 8 236 5.2E-11 T 23-04-2016 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Pfam PF14579 Helix-hairpin-helix motif 769 861 1.7E-21 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Pfam PF02811 PHP domain 6 124 5.3E-19 T 23-04-2016 IPR004013 PHP domain GO:0003824 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 SMART SM00481 2 69 4.8E-18 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 PANTHER PTHR32294:SF4 1 1021 0.0 T 23-04-2016 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 PANTHER PTHR32294 1 1021 0.0 T 23-04-2016 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 1 1031 13.027 T 23-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 274 695 1.1E-135 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Gene3D G3DSA:1.10.150.280 805 849 2.0E-5 T 23-04-2016 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 SUPERFAMILY SSF89550 8 78 2.35E-10 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 SUPERFAMILY SSF89550 115 182 2.35E-10 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS07730 cee6f62a5993c08bbbf4db0e1611eb6a 1031 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 867 9.3E-173 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS05395 5ac2d0f961747948cb3e4887b7cc674b 296 Gene3D G3DSA:3.40.1190.20 10 285 1.9E-50 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS05395 5ac2d0f961747948cb3e4887b7cc674b 296 SUPERFAMILY SSF53613 10 280 4.21E-49 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS05395 5ac2d0f961747948cb3e4887b7cc674b 296 Pfam PF00294 pfkB family carbohydrate kinase 26 281 3.1E-39 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB THIMO_RS05395 5ac2d0f961747948cb3e4887b7cc674b 296 PANTHER PTHR10584 4 280 2.8E-41 T 23-04-2016 THIMO_RS05395 5ac2d0f961747948cb3e4887b7cc674b 296 PANTHER PTHR10584:SF188 4 280 2.8E-41 T 23-04-2016 THIMO_RS05395 5ac2d0f961747948cb3e4887b7cc674b 296 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 27 51 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.643 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 SUPERFAMILY SSF54821 108 206 5.89E-40 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.7E-40 T 23-04-2016 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 Gene3D G3DSA:3.30.1140.32 108 207 1.9E-46 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 8.5E-98 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 PANTHER PTHR11760 2 217 7.5E-138 T 23-04-2016 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 SMART SM00322 60 125 3.8E-8 T 23-04-2016 IPR004087 K Homology domain GO:0003676 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 23-04-2016 IPR018280 Ribosomal protein S3, conserved site THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 SUPERFAMILY SSF54814 2 106 1.62E-38 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 Gene3D G3DSA:3.30.300.20 17 107 1.2E-34 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 PANTHER PTHR11760:SF19 2 217 7.5E-138 T 23-04-2016 THIMO_RS13600 9533affbdfea6ed0c5119eae34bf2719 228 Pfam PF07650 KH domain 38 111 1.6E-19 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 THIMO_RS13215 894f6331de000481d1da1e10ce9523ea 162 Gene3D G3DSA:3.30.1050.10 59 137 7.6E-8 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS13215 894f6331de000481d1da1e10ce9523ea 162 SUPERFAMILY SSF55718 37 139 4.41E-16 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS13215 894f6331de000481d1da1e10ce9523ea 162 Pfam PF02036 SCP-2 sterol transfer family 45 134 4.1E-11 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS13215 894f6331de000481d1da1e10ce9523ea 162 PANTHER PTHR10094 3 147 2.0E-32 T 23-04-2016 THIMO_RS13215 894f6331de000481d1da1e10ce9523ea 162 PANTHER PTHR10094:SF16 3 147 2.0E-32 T 23-04-2016 THIMO_RS01450 041e22efe41a62fb6e827544a2a79102 229 Pfam PF00005 ABC transporter 21 168 2.4E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS01450 041e22efe41a62fb6e827544a2a79102 229 SMART SM00382 29 217 4.3E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01450 041e22efe41a62fb6e827544a2a79102 229 PANTHER PTHR24220 3 213 1.9E-75 T 23-04-2016 THIMO_RS01450 041e22efe41a62fb6e827544a2a79102 229 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS01450 041e22efe41a62fb6e827544a2a79102 229 Gene3D G3DSA:3.40.50.300 1 224 1.6E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01450 041e22efe41a62fb6e827544a2a79102 229 SUPERFAMILY SSF52540 1 223 1.26E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 SUPERFAMILY SSF53067 1 115 1.22E-25 T 23-04-2016 THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 245 1.9E-25 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 Gene3D G3DSA:3.30.420.40 87 246 1.9E-34 T 23-04-2016 THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 PANTHER PTHR34265 1 246 5.4E-37 T 23-04-2016 THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 Pfam PF03309 Type III pantothenate kinase 3 202 7.3E-43 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 247 17.065 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 THIMO_RS06450 03b29a0938bbe1ca7e4a7bef512a91d6 247 SUPERFAMILY SSF53067 117 246 6.8E-24 T 23-04-2016 THIMO_RS18295 8ca9cda50995ecff604b3be0b18130e0 220 Gene3D G3DSA:3.40.50.150 5 183 3.6E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18295 8ca9cda50995ecff604b3be0b18130e0 220 SUPERFAMILY SSF53335 4 204 1.23E-35 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18295 8ca9cda50995ecff604b3be0b18130e0 220 PANTHER PTHR10108 5 183 4.6E-20 T 23-04-2016 THIMO_RS18295 8ca9cda50995ecff604b3be0b18130e0 220 PANTHER PTHR10108:SF705 5 183 4.6E-20 T 23-04-2016 THIMO_RS18295 8ca9cda50995ecff604b3be0b18130e0 220 Pfam PF13489 Methyltransferase domain 31 183 1.2E-18 T 23-04-2016 THIMO_RS07040 47e0e789fbcb50b289393c0b018b1fb6 113 PANTHER PTHR12735 6 104 8.1E-41 T 23-04-2016 THIMO_RS07040 47e0e789fbcb50b289393c0b018b1fb6 113 PANTHER PTHR12735:SF23 6 104 8.1E-41 T 23-04-2016 THIMO_RS07040 47e0e789fbcb50b289393c0b018b1fb6 113 Gene3D G3DSA:3.30.300.90 1 102 5.2E-31 T 23-04-2016 IPR002634 BolA protein THIMO_RS07040 47e0e789fbcb50b289393c0b018b1fb6 113 Pfam PF01722 BolA-like protein 12 84 1.5E-28 T 23-04-2016 IPR002634 BolA protein THIMO_RS07040 47e0e789fbcb50b289393c0b018b1fb6 113 PIRSF PIRSF003113 1 100 1.2E-32 T 23-04-2016 IPR002634 BolA protein THIMO_RS07040 47e0e789fbcb50b289393c0b018b1fb6 113 SUPERFAMILY SSF82657 2 88 7.06E-28 T 23-04-2016 IPR002634 BolA protein THIMO_RS04180 359d2034e992574652f09e916e4c0c5a 161 SUPERFAMILY SSF50199 31 150 3.4E-11 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold THIMO_RS04180 359d2034e992574652f09e916e4c0c5a 161 Gene3D G3DSA:2.40.50.90 41 150 1.5E-5 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 Gene3D G3DSA:1.10.150.170 114 216 2.7E-35 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 Gene3D G3DSA:3.40.50.150 217 309 1.3E-46 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 Gene3D G3DSA:3.40.50.150 6 111 1.3E-46 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 PIRSF PIRSF004486 1 310 1.0E-97 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 6 309 37.571 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 Pfam PF01795 MraW methylase family 6 308 6.7E-105 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 5 308 5.2E-104 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 PANTHER PTHR11265:SF0 5 310 3.0E-139 T 23-04-2016 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 PANTHER PTHR11265 5 310 3.0E-139 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 SUPERFAMILY SSF81799 115 214 9.02E-33 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 SUPERFAMILY SSF53335 214 309 7.19E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14820 08be8caad6839d7cefadc109ea8df355 310 SUPERFAMILY SSF53335 5 114 7.19E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS01080 251ba69d996511a004a7ce1e5fa88916 243 SUPERFAMILY SSF161098 41 226 5.49E-33 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS01080 251ba69d996511a004a7ce1e5fa88916 243 Gene3D G3DSA:1.10.3720.10 39 234 1.2E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS01080 251ba69d996511a004a7ce1e5fa88916 243 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 66 232 2.5E-23 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS01080 251ba69d996511a004a7ce1e5fa88916 243 PANTHER PTHR30151 1 239 2.4E-71 T 23-04-2016 THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 SUPERFAMILY SSF51735 118 295 2.91E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 Pfam PF00107 Zinc-binding dehydrogenase 161 279 2.9E-12 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 PANTHER PTHR11695 18 330 2.0E-122 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 Gene3D G3DSA:3.40.50.720 134 295 1.6E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 PANTHER PTHR11695:SF13 18 330 2.0E-122 T 23-04-2016 IPR014188 Acrylyl-CoA reductase AcuI THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 SUPERFAMILY SSF50129 6 141 5.02E-39 T 23-04-2016 IPR011032 GroES-like THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 Gene3D G3DSA:3.90.180.10 18 133 2.0E-11 T 23-04-2016 IPR011032 GroES-like THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 SMART SM00829 18 326 4.0E-7 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 THIMO_RS13490 a25a57468b12d1046c0ced0ae6db3eb4 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 6 328 1.4E-123 T 23-04-2016 IPR014188 Acrylyl-CoA reductase AcuI THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 PANTHER PTHR13779:SF28 214 286 1.9E-81 T 23-04-2016 THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 PANTHER PTHR13779:SF28 7 187 1.9E-81 T 23-04-2016 THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 Pfam PF05673 Protein of unknown function (DUF815) 33 285 4.2E-105 T 23-04-2016 IPR008533 Domain of unknown function DUF815 THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 SUPERFAMILY SSF52540 44 189 1.12E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 Gene3D G3DSA:3.40.50.300 55 187 2.2E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 PANTHER PTHR13779 214 286 1.9E-81 T 23-04-2016 THIMO_RS09615 094ac7a3149ffdc53b37561bb6859967 287 PANTHER PTHR13779 7 187 1.9E-81 T 23-04-2016 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 37.794 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 PANTHER PTHR21327:SF6 1 366 9.6E-152 T 23-04-2016 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 6.5E-70 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 PANTHER PTHR21327 1 366 9.6E-152 T 23-04-2016 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 SUPERFAMILY SSF55821 2 203 8.47E-85 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 Pfam PF00925 GTP cyclohydrolase II 209 368 5.5E-40 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 SUPERFAMILY SSF142695 204 368 4.45E-45 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 PIRSF PIRSF001259 1 369 5.0E-125 T 23-04-2016 THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 Gene3D G3DSA:3.90.870.10 1 208 1.1E-97 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS01020 d7b3d37105e3ef8615211fa0ced32763 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.2E-82 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 Gene3D G3DSA:3.30.830.10 271 434 4.6E-28 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 PANTHER PTHR11851:SF136 23 440 1.1E-110 T 23-04-2016 THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 SUPERFAMILY SSF63411 240 438 6.33E-36 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 Pfam PF00675 Insulinase (Peptidase family M16) 34 177 1.8E-25 T 23-04-2016 IPR011765 Peptidase M16, N-terminal THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 PANTHER PTHR11851 23 440 1.1E-110 T 23-04-2016 THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 Pfam PF05193 Peptidase M16 inactive domain 188 370 1.2E-23 T 23-04-2016 IPR007863 Peptidase M16, C-terminal THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 SUPERFAMILY SSF63411 22 230 1.4E-61 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 THIMO_RS17205 9f47cc7c971abb7cdafd8405d11ad502 455 Gene3D G3DSA:3.30.830.10 20 245 9.8E-58 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 SUPERFAMILY SSF54631 192 329 1.46E-28 T 23-04-2016 THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 Pfam PF03471 Transporter associated domain 343 414 2.0E-11 T 23-04-2016 IPR005170 Transporter-associated domain THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 Gene3D G3DSA:3.30.465.10 320 414 1.7E-19 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 SMART SM01091 341 418 2.3E-15 T 23-04-2016 IPR005170 Transporter-associated domain THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 PANTHER PTHR22777 8 414 1.9E-134 T 23-04-2016 THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 Pfam PF00571 CBS domain 205 261 1.6E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 Pfam PF00571 CBS domain 295 326 2.9E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 SUPERFAMILY SSF56176 338 415 2.73E-17 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 Gene3D G3DSA:3.10.580.10 192 319 2.2E-18 T 23-04-2016 THIMO_RS09210 df759116aa029de0545521a70695fd9a 429 Pfam PF01595 Domain of unknown function DUF21 13 181 6.5E-46 T 23-04-2016 IPR002550 Domain of unknown function DUF21 THIMO_RS14840 1979aae9b03770456db45fad26037b01 154 SUPERFAMILY SSF54637 12 139 5.98E-23 T 23-04-2016 IPR029069 HotDog domain THIMO_RS14840 1979aae9b03770456db45fad26037b01 154 Gene3D G3DSA:3.10.129.10 12 139 9.7E-22 T 23-04-2016 IPR029069 HotDog domain THIMO_RS14840 1979aae9b03770456db45fad26037b01 154 Pfam PF01575 MaoC like domain 17 114 1.2E-8 T 23-04-2016 IPR002539 MaoC-like domain THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 137 150 4.4E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 306 321 4.4E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 321 332 4.4E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 285 297 4.4E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 161 169 4.4E-26 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.10.10.10 278 340 1.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 24 347 39.756 T 23-04-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 SUPERFAMILY SSF88659 244 341 1.79E-24 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.10.10.10 186 235 5.9E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF04542 Sigma-70 region 2 114 182 4.6E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PANTHER PTHR30603:SF15 25 348 8.3E-154 T 23-04-2016 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 PANTHER PTHR30603 25 348 8.3E-154 T 23-04-2016 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF04539 Sigma-70 region 3 193 267 9.7E-20 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 109 335 2.5E-35 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 137 150 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF04545 Sigma-70, region 4 281 334 3.4E-16 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 SUPERFAMILY SSF88659 186 260 9.59E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF00140 Sigma-70 factor, region 1.2 75 106 2.4E-13 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 SUPERFAMILY SSF88946 75 183 7.59E-47 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 71 347 1.0E-132 T 23-04-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS06385 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.10.601.10 39 182 2.2E-59 T 23-04-2016 THIMO_RS04310 f1d232aedd7d40b81c86519f47b06daf 467 Gene3D G3DSA:1.10.510.10 95 237 1.2E-19 T 23-04-2016 THIMO_RS04310 f1d232aedd7d40b81c86519f47b06daf 467 Pfam PF00069 Protein kinase domain 26 240 2.0E-12 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS04310 f1d232aedd7d40b81c86519f47b06daf 467 SUPERFAMILY SSF56112 24 288 3.14E-24 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS04310 f1d232aedd7d40b81c86519f47b06daf 467 SMART SM00220 25 314 1.4E-6 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 PANTHER PTHR11493 74 232 1.0E-47 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 PANTHER PTHR11493 299 391 1.0E-47 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 TIGRFAM TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit 11 413 1.2E-202 T 23-04-2016 IPR011806 Sulphite reductase, dissimilatory-type alpha subunit GO:0018551|GO:0020037|GO:0051539|GO:0055114 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 89 150 9.6E-7 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 PANTHER PTHR11493:SF50 74 232 1.0E-47 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 PANTHER PTHR11493:SF50 299 391 1.0E-47 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 Gene3D G3DSA:3.30.70.20 261 296 2.6E-6 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF56014 305 400 4.25E-49 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF56014 162 235 4.25E-49 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 161 379 2.7E-35 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF55124 7 161 2.62E-59 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF54862 222 302 3.14E-16 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 Gene3D G3DSA:3.30.413.10 305 376 2.6E-26 T 23-04-2016 THIMO_RS00690 513d40a56fb60100c30179a33a7a18f3 417 Gene3D G3DSA:3.30.413.10 161 235 2.6E-26 T 23-04-2016 THIMO_RS10840 a8e7d2bc6ea61a86afbc35a7fa88de7e 98 SUPERFAMILY SSF159468 6 96 1.07E-9 T 23-04-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 THIMO_RS10840 a8e7d2bc6ea61a86afbc35a7fa88de7e 98 Gene3D G3DSA:3.40.50.10580 5 77 5.4E-7 T 23-04-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 THIMO_RS10840 a8e7d2bc6ea61a86afbc35a7fa88de7e 98 Pfam PF01990 ATP synthase (F/14-kDa) subunit 6 79 1.6E-7 T 23-04-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 Pfam PF00106 short chain dehydrogenase 18 208 2.7E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 SUPERFAMILY SSF51735 14 246 4.88E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PANTHER PTHR24322:SF337 169 201 1.5E-41 T 23-04-2016 THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PANTHER PTHR24322:SF337 21 153 1.5E-41 T 23-04-2016 THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 4.8E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 4.8E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 4.8E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 4.8E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PANTHER PTHR24322 169 201 1.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PANTHER PTHR24322 21 153 1.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 THIMO_RS10935 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 Gene3D G3DSA:3.40.50.720 14 246 4.9E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.20.1580.10 95 133 1.2E-52 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.20.1580.10 411 481 1.2E-52 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.20.1580.10 255 288 1.2E-52 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 PANTHER PTHR32282 4 945 0.0 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.10.8.280 291 410 9.9E-42 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 ProSitePatterns PS00211 ABC transporters family signature. 491 505 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.20.1580.10 697 823 1.0E-52 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Hamap MF_00205 UvrABC system protein A [uvrA]. 5 943 22.683 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Pfam PF00005 ABC transporter 809 863 7.5E-5 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.40.50.300 610 695 2.1E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.40.50.300 3 55 1.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.40.50.300 482 598 1.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.40.50.300 824 941 2.1E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 SUPERFAMILY SSF52540 442 573 4.46E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 SUPERFAMILY SSF52540 8 208 4.46E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.30.1490.20 204 245 9.1E-25 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.30.1490.20 134 157 9.1E-25 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 PANTHER PTHR32282:SF2 4 945 0.0 T 23-04-2016 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 SUPERFAMILY SSF52540 621 916 2.1E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 ProSitePatterns PS00211 ABC transporters family signature. 833 847 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS12360 dcc36996b19a18b764250b6fd7060fe9 947 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 7 928 0.0 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 THIMO_RS13330 bd2c38cc382ead5dee119bb76861f290 223 Pfam PF01618 MotA/TolQ/ExbB proton channel family 72 195 1.4E-28 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 THIMO_RS13330 bd2c38cc382ead5dee119bb76861f290 223 PANTHER PTHR30625:SF0 4 204 2.1E-34 T 23-04-2016 THIMO_RS13330 bd2c38cc382ead5dee119bb76861f290 223 PANTHER PTHR30625 4 204 2.1E-34 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.450.20 487 620 1.7E-13 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00388 777 842 1.7E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PANTHER PTHR24423:SF382 1146 1330 4.4E-188 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PANTHER PTHR24423:SF382 363 523 4.4E-188 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PANTHER PTHR24423:SF382 669 1015 4.4E-188 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:1.20.120.160 1330 1425 6.4E-19 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF13426 PAS domain 657 756 4.9E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF00989 PAS fold 371 483 2.9E-17 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 657 763 5.6E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 367 493 2.0E-32 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00091 370 436 7.8E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00091 498 570 170.0 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00091 642 709 0.031 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF00072 Response regulator receiver domain 1179 1291 6.1E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF01627 Hpt domain 1338 1417 2.9E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PANTHER PTHR24423 1146 1330 4.4E-188 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PANTHER PTHR24423 363 523 4.4E-188 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PANTHER PTHR24423 669 1015 4.4E-188 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55785 381 493 2.26E-32 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF08448 PAS fold 504 621 2.8E-8 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00086 715 757 0.061 T 23-04-2016 IPR001610 PAC motif THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00086 579 620 29.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00086 446 486 1.5 T 23-04-2016 IPR001610 PAC motif THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF52172 1178 1300 1.57E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:1.10.287.130 782 838 2.3E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF47384 763 843 1.71E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.565.10 843 1011 1.4E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.450.20 645 781 2.2E-20 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 778 842 7.4E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55785 483 618 8.55E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF47226 1310 1426 3.01E-18 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 972 990 5.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 996 1009 5.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 955 965 5.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 937 951 5.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55785 657 764 8.22E-20 T 23-04-2016 IPR000014 PAS domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.40.50.2300 1166 1298 4.9E-39 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55874 831 1010 1.57E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00387 888 1012 4.6E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00448 1177 1291 1.0E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.450.20 363 484 2.7E-32 T 23-04-2016 THIMO_RS02990 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 888 1010 2.7E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS05945 248c90354cf09c9d183c57c154d963cc 189 Pfam PF14334 Domain of unknown function (DUF4390) 28 185 1.1E-46 T 23-04-2016 IPR025500 Protein of unknown function DUF4390 THIMO_RS06850 60f6e06182c15e91256429c7a5cc13f2 120 Gene3D G3DSA:1.10.260.40 7 79 2.0E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS06850 60f6e06182c15e91256429c7a5cc13f2 120 Pfam PF13560 Helix-turn-helix domain 11 66 7.2E-9 T 23-04-2016 THIMO_RS06850 60f6e06182c15e91256429c7a5cc13f2 120 SUPERFAMILY SSF47413 10 79 9.57E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS06850 60f6e06182c15e91256429c7a5cc13f2 120 SMART SM00530 15 73 5.3E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.7E-45 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 SUPERFAMILY SSF54999 5 101 2.75E-36 T 23-04-2016 IPR027486 Ribosomal protein S10 domain THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.1E-18 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.1E-18 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.1E-18 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 PANTHER PTHR11700 1 100 3.4E-52 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.2E-34 T 23-04-2016 IPR027486 Ribosomal protein S10 domain THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.393 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 SMART SM01403 7 101 2.4E-55 T 23-04-2016 IPR027486 Ribosomal protein S10 domain THIMO_RS13635 cbec4611463e33949daef5ddf46bbb43 103 Gene3D G3DSA:3.30.70.600 3 102 8.5E-43 T 23-04-2016 IPR027486 Ribosomal protein S10 domain THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 Gene3D G3DSA:3.30.70.1290 12 128 6.4E-16 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 PANTHER PTHR34322 2 230 6.2E-40 T 23-04-2016 THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 SMART SM01321 9 125 5.3E-46 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 Pfam PF01797 Transposase IS200 like 13 122 1.7E-15 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 Gene3D G3DSA:1.10.260.40 257 277 9.8E-5 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 PANTHER PTHR34322:SF1 2 230 6.2E-40 T 23-04-2016 THIMO_RS12325 17e51157d8745fcf946035ef6a874e0e 279 SUPERFAMILY SSF143422 1 131 3.01E-29 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15360 08a463576d367ade001861e22a867afe 295 Pfam PF00639 PPIC-type PPIASE domain 157 250 5.4E-21 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 THIMO_RS15360 08a463576d367ade001861e22a867afe 295 PANTHER PTHR10657 41 293 9.2E-39 T 23-04-2016 THIMO_RS15360 08a463576d367ade001861e22a867afe 295 SUPERFAMILY SSF54534 145 250 7.2E-24 T 23-04-2016 THIMO_RS15360 08a463576d367ade001861e22a867afe 295 TIGRFAM TIGR02933 nifM_nitrog: nitrogen fixation protein NifM 20 288 1.1E-61 T 23-04-2016 IPR014282 Nitrogen fixation protein NifM THIMO_RS15360 08a463576d367ade001861e22a867afe 295 Gene3D G3DSA:3.10.50.40 145 275 1.7E-29 T 23-04-2016 THIMO_RS15360 08a463576d367ade001861e22a867afe 295 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 192 212 - T 23-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site THIMO_RS15360 08a463576d367ade001861e22a867afe 295 SUPERFAMILY SSF109998 27 179 6.67E-22 T 23-04-2016 IPR027304 Trigger factor/SurA domain THIMO_RS15360 08a463576d367ade001861e22a867afe 295 PANTHER PTHR10657:SF11 41 293 9.2E-39 T 23-04-2016 THIMO_RS16965 40cf9daf4449dbccf001080827d4e19d 96 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 23 89 1.6E-21 T 23-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 THIMO_RS11995 efe6f98af73469db083fbe4a9ca4e503 220 Pfam PF10986 Protein of unknown function (DUF2796) 41 216 9.1E-56 T 23-04-2016 IPR021253 Protein of unknown function DUF2796 THIMO_RS06790 1c7b88f9cb5dfc224e6ba7fc4a442696 375 PANTHER PTHR12526:SF141 22 372 1.8E-50 T 23-04-2016 THIMO_RS06790 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Pfam PF13439 Glycosyltransferase Family 4 21 182 1.3E-12 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS06790 1c7b88f9cb5dfc224e6ba7fc4a442696 375 PANTHER PTHR12526 22 372 1.8E-50 T 23-04-2016 THIMO_RS06790 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Gene3D G3DSA:3.40.50.2000 200 356 6.0E-25 T 23-04-2016 THIMO_RS06790 1c7b88f9cb5dfc224e6ba7fc4a442696 375 SUPERFAMILY SSF53756 21 371 6.77E-68 T 23-04-2016 THIMO_RS06790 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Pfam PF00534 Glycosyl transferases group 1 202 356 5.7E-35 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS07460 8ed3657bc89d2feaa479aa233170bb61 829 Pfam PF02687 FtsX-like permease family 259 364 2.1E-9 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS07460 8ed3657bc89d2feaa479aa233170bb61 829 Pfam PF02687 FtsX-like permease family 708 816 8.1E-12 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS07460 8ed3657bc89d2feaa479aa233170bb61 829 PANTHER PTHR30287 2 829 4.5E-125 T 23-04-2016 THIMO_RS00555 317d115094fe8ced180cff0807ab272d 337 PANTHER PTHR21716 8 337 5.7E-95 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS00555 317d115094fe8ced180cff0807ab272d 337 Pfam PF01594 Domain of unknown function DUF20 14 324 3.2E-55 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS00555 317d115094fe8ced180cff0807ab272d 337 PANTHER PTHR21716:SF17 8 337 5.7E-95 T 23-04-2016 THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 Pfam PF13559 Domain of unknown function (DUF4129) 619 678 1.0E-6 T 23-04-2016 IPR025403 Domain of unknown function DUF4129 THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 Gene3D G3DSA:3.90.260.10 352 630 1.4E-19 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 SUPERFAMILY SSF54001 536 640 2.66E-31 T 23-04-2016 THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 SUPERFAMILY SSF54001 341 503 2.66E-31 T 23-04-2016 THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 SMART SM00460 417 488 4.4E-13 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 Pfam PF11992 Domain of unknown function (DUF3488) 6 330 5.5E-76 T 23-04-2016 IPR021878 Protein of unknown function DUF3488 THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 PANTHER PTHR33490:SF4 7 486 8.8E-56 T 23-04-2016 THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 Pfam PF01841 Transglutaminase-like superfamily 370 486 3.4E-18 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS03155 b78e40d8524826060aaac16dedd68974 693 PANTHER PTHR33490 7 486 8.8E-56 T 23-04-2016 THIMO_RS15610 8b80998c7b96c171ce35ce0911823dfb 301 SUPERFAMILY SSF53335 49 277 2.76E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS15610 8b80998c7b96c171ce35ce0911823dfb 301 PANTHER PTHR10108 65 266 6.9E-27 T 23-04-2016 THIMO_RS15610 8b80998c7b96c171ce35ce0911823dfb 301 Pfam PF08241 Methyltransferase domain 84 183 2.6E-17 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS15610 8b80998c7b96c171ce35ce0911823dfb 301 Gene3D G3DSA:3.40.50.150 45 258 1.0E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 158 179 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 260 286 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 34 53 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 53 69 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 358 377 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 410 427 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 134 158 2.5E-78 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206:SF90 470 483 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 Pfam PF03023 MviN-like protein 29 470 2.3E-139 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 4 502 5.1E-141 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206:SF90 218 443 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206:SF90 121 130 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206:SF90 73 83 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206 470 483 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206 218 443 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PIRSF PIRSF002869 1 509 3.1E-164 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206 121 130 1.8E-84 T 23-04-2016 THIMO_RS05450 44fe932c1d54bed561c0a90724889801 511 PANTHER PTHR11206 73 83 1.8E-84 T 23-04-2016 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 PANTHER PTHR13779:SF25 1 335 1.4E-181 T 23-04-2016 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 SMART SM00382 54 185 2.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 Gene3D G3DSA:3.40.50.300 23 182 9.8E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 7.2E-32 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 SUPERFAMILY SSF52540 23 255 1.76E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 330 2.0E-31 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 Gene3D G3DSA:1.10.8.60 186 258 6.6E-34 T 23-04-2016 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 7.1E-144 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 SUPERFAMILY SSF46785 260 332 1.27E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 PANTHER PTHR13779 1 335 1.4E-181 T 23-04-2016 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 Gene3D G3DSA:1.10.10.10 260 330 1.8E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 353 181.167 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 THIMO_RS13045 0bfca23bf47cb39d27a0be83876ad73c 353 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 4.4E-115 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 THIMO_RS15565 cdc336b7dc284576acf27fd5739ac5d6 401 SUPERFAMILY SSF56762 25 380 1.05E-33 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15565 cdc336b7dc284576acf27fd5739ac5d6 401 Gene3D G3DSA:1.10.645.10 20 199 1.7E-9 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15565 cdc336b7dc284576acf27fd5739ac5d6 401 Gene3D G3DSA:1.10.645.10 233 380 2.7E-16 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 SMART SM00418 7 89 1.4E-26 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 PANTHER PTHR33154 6 98 6.9E-25 T 23-04-2016 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 2.8E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 2.8E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 2.8E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 2.8E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 Gene3D G3DSA:1.10.10.10 6 88 1.3E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 Pfam PF01022 Bacterial regulatory protein, arsR family 16 60 1.9E-14 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS08660 263c66286f2df91fda2090ec866fae6d 117 SUPERFAMILY SSF46785 5 87 1.96E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:1.10.10.60 395 463 1.5E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Pfam PF00072 Response regulator receiver domain 7 115 8.5E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Pfam PF00158 Sigma-54 interaction domain 139 306 3.2E-71 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 427 444 2.602372E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 464 2.602372E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Pfam PF02954 Bacterial regulatory protein, Fis family 422 461 6.2E-15 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 SMART SM00382 159 302 3.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 SUPERFAMILY SSF46689 379 464 2.33E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 PANTHER PTHR32071:SF15 1 474 2.6E-235 T 23-04-2016 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 SUPERFAMILY SSF52540 138 382 5.33E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:3.40.50.2300 4 125 1.1E-37 T 23-04-2016 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:1.10.8.60 312 388 9.8E-25 T 23-04-2016 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:3.40.50.300 136 311 6.5E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 SUPERFAMILY SSF52172 4 184 1.11E-44 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 7 461 5.6E-223 T 23-04-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 SMART SM00448 5 116 2.7E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS17480 6a4b17048347b91e0bfb16bc48ee6371 478 PANTHER PTHR32071 1 474 2.6E-235 T 23-04-2016 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 139 154 1.9E-13 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 356 378 1.9E-13 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 189 202 1.9E-13 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 119 137 1.9E-13 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 Gene3D G3DSA:3.40.50.1820 91 380 1.3E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 Pfam PF12697 Alpha/beta hydrolase family 115 364 1.7E-14 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 SUPERFAMILY SSF53474 92 380 2.49E-46 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PANTHER PTHR10992:SF842 277 381 2.1E-40 T 23-04-2016 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PANTHER PTHR10992:SF842 91 261 2.1E-40 T 23-04-2016 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PANTHER PTHR10992 277 381 2.1E-40 T 23-04-2016 THIMO_RS14445 d9ed87de4272aa4afc65e0f09723341d 381 PANTHER PTHR10992 91 261 2.1E-40 T 23-04-2016 THIMO_RS16535 dae2d3418cab87aa0fc9f38e1e67fdbd 534 Gene3D G3DSA:3.30.450.20 86 221 5.1E-13 T 23-04-2016 THIMO_RS16535 dae2d3418cab87aa0fc9f38e1e67fdbd 534 Pfam PF04326 Putative DNA-binding domain 390 521 3.1E-16 T 23-04-2016 IPR007421 Schlafen, AAA domain GO:0005524 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 SUPERFAMILY SSF69786 2 86 2.22E-27 T 23-04-2016 IPR003746 Protein of unknown function DUF167 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 Gene3D G3DSA:3.30.1200.10 2 86 1.0E-26 T 23-04-2016 IPR003746 Protein of unknown function DUF167 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 18.386 T 23-04-2016 IPR003746 Protein of unknown function DUF167 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 7 86 1.7E-16 T 23-04-2016 IPR005228 Conserved hypothetical protein CHP00251 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 SMART SM01152 7 83 1.8E-34 T 23-04-2016 IPR003746 Protein of unknown function DUF167 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 5.3E-24 T 23-04-2016 IPR003746 Protein of unknown function DUF167 THIMO_RS03585 a8ff84b2a0f6f7e0405d97568acf1bc3 100 PANTHER PTHR13420 13 81 4.2E-15 T 23-04-2016 THIMO_RS07485 ba90453cb9e3b6fa6d2d4301709f09c0 138 Pfam PF09722 Protein of unknown function (DUF2384) 75 121 2.2E-4 T 23-04-2016 IPR024467 Domain of unknown function DUF2384 THIMO_RS07485 ba90453cb9e3b6fa6d2d4301709f09c0 138 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 17 121 7.0E-10 T 23-04-2016 IPR020358 Uncharacterised protein family Y4oB THIMO_RS03425 ec34f52c296eee750f615c392d2b55ca 115 Gene3D G3DSA:3.30.420.130 1 101 2.4E-16 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS03425 ec34f52c296eee750f615c392d2b55ca 115 SUPERFAMILY SSF53146 1 110 9.94E-20 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS03425 ec34f52c296eee750f615c392d2b55ca 115 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 101 1.0E-9 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 Pfam PF13537 Glutamine amidotransferase domain 47 167 4.6E-43 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 SUPERFAMILY SSF52402 442 566 7.72E-72 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 SUPERFAMILY SSF52402 233 389 7.72E-72 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 PANTHER PTHR11772 434 541 3.8E-167 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 PANTHER PTHR11772 2 391 3.8E-167 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 589 0.0 T 23-04-2016 IPR017535 Asparagine synthase family amidotransferase THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 Gene3D G3DSA:3.40.50.620 437 587 7.4E-81 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 Gene3D G3DSA:3.40.50.620 225 385 7.4E-81 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 Gene3D G3DSA:3.60.20.10 1 224 3.4E-68 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 SUPERFAMILY SSF56235 1 224 8.58E-59 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 PANTHER PTHR11772:SF10 434 541 3.8E-167 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 PANTHER PTHR11772:SF10 2 391 3.8E-167 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 Pfam PF00733 Asparagine synthase 248 587 1.1E-81 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 PIRSF PIRSF001589 1 591 5.2E-210 T 23-04-2016 THIMO_RS08600 f622b7cd98e167e427ec9cc764be3144 591 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 520 7.0E-125 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 SUPERFAMILY SSF52402 218 381 5.24E-31 T 23-04-2016 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 SUPERFAMILY SSF52402 492 563 5.24E-31 T 23-04-2016 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 Gene3D G3DSA:3.60.20.10 1 221 2.8E-38 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 PANTHER PTHR11772:SF10 3 372 3.8E-35 T 23-04-2016 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 PANTHER PTHR11772 3 372 3.8E-35 T 23-04-2016 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 Pfam PF00733 Asparagine synthase 240 373 2.9E-25 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 Pfam PF00733 Asparagine synthase 502 591 3.8E-11 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 Pfam PF13537 Glutamine amidotransferase domain 69 164 3.6E-16 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 SUPERFAMILY SSF56235 1 223 3.86E-32 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 Gene3D G3DSA:3.40.50.620 464 589 1.1E-33 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS17035 b2c590856939e4b2f9cd05b74424caf5 617 Gene3D G3DSA:3.40.50.620 222 380 1.1E-33 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Gene3D G3DSA:3.40.1190.10 81 312 1.1E-68 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Pfam PF01225 Mur ligase family, catalytic domain 25 91 7.4E-9 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 28 448 7.6E-126 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 PANTHER PTHR23135:SF3 15 449 3.1E-144 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 PANTHER PTHR23135 15 449 3.1E-144 T 23-04-2016 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 SUPERFAMILY SSF63418 2 96 3.53E-24 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 SUPERFAMILY SSF53623 100 313 8.11E-51 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Gene3D G3DSA:3.40.1390.10 1 79 1.0E-22 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Gene3D G3DSA:3.90.190.20 315 450 7.3E-41 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 388 1.0E-10 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Pfam PF08245 Mur ligase middle domain 104 295 4.3E-42 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 SUPERFAMILY SSF53244 316 448 8.7E-35 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14800 4019e1b7bdb0e11a8e75f3128c2e567a 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 449 32.181 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS16025 ab622f44e2deefaa08a4e1eed45465d8 198 Pfam PF04982 HPP family 72 194 3.2E-45 T 23-04-2016 IPR007065 HPP THIMO_RS16025 ab622f44e2deefaa08a4e1eed45465d8 198 PANTHER PTHR33741 21 198 1.6E-45 T 23-04-2016 THIMO_RS16025 ab622f44e2deefaa08a4e1eed45465d8 198 PANTHER PTHR33741:SF1 21 198 1.6E-45 T 23-04-2016 THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 Pfam PF03781 Sulfatase-modifying factor enzyme 1 654 882 4.9E-47 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF52200 4 121 9.94E-13 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 Pfam PF13676 TIR domain 7 104 1.6E-12 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF56436 648 884 3.77E-52 T 23-04-2016 IPR016187 C-type lectin fold THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF52540 265 435 1.4E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF52540 163 226 1.4E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 PANTHER PTHR23150 570 882 2.8E-44 T 23-04-2016 THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 PANTHER PTHR23150 15 33 2.8E-44 T 23-04-2016 THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 Gene3D G3DSA:3.40.50.300 170 208 2.4E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 Gene3D G3DSA:3.40.50.10140 4 107 4.2E-6 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS13755 6306efcbf43a139adaa6d4d19b5500b8 891 Gene3D G3DSA:3.90.1580.10 647 885 1.6E-51 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 6.6E-5 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 SUPERFAMILY SSF51735 123 265 1.95E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 TIGRFAM TIGR01202 bchC: chlorophyll synthesis pathway protein BchC 4 309 3.2E-133 T 23-04-2016 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase GO:0016491|GO:0030494|GO:0036354|GO:0055114 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00671 THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 PANTHER PTHR11695:SF38 14 312 3.1E-24 T 23-04-2016 THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 Gene3D G3DSA:3.90.180.10 5 172 4.0E-20 T 23-04-2016 IPR011032 GroES-like THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 Gene3D G3DSA:3.40.50.720 202 253 2.9E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 PANTHER PTHR11695 14 312 3.1E-24 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 THIMO_RS14300 81ad936acbfd8b21fe7fd1e00462f2e3 314 SUPERFAMILY SSF50129 5 155 2.74E-25 T 23-04-2016 IPR011032 GroES-like THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 PANTHER PTHR22572 102 298 3.0E-47 T 23-04-2016 THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 12 329 36.693 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 142 183 9.0E-6 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 2.0E-5 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 PANTHER PTHR22572:SF117 102 298 3.0E-47 T 23-04-2016 THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 26 91 2.2E-20 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 SUPERFAMILY SSF51161 38 319 1.01E-78 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 Gene3D G3DSA:2.160.10.10 110 220 5.2E-25 T 23-04-2016 THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 12 332 9.1E-114 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 THIMO_RS03495 32e392775c2870482b159dc01773ff77 343 Gene3D G3DSA:2.160.10.10 221 331 1.4E-20 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 PANTHER PTHR21631 18 32 3.1E-128 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 PANTHER PTHR21631 501 722 3.1E-128 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 PANTHER PTHR21631:SF7 18 32 3.1E-128 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 PANTHER PTHR21631:SF7 501 722 3.1E-128 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 SUPERFAMILY SSF51645 2 722 2.62E-293 T 23-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 383.886 T 23-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:2.170.170.11 136 264 1.1E-62 T 23-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:2.170.170.11 298 335 1.1E-62 T 23-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 721 0.0 T 23-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:1.20.1220.12 591 722 2.1E-70 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:3.20.20.360 336 588 1.1E-141 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:3.20.20.360 89 135 1.1E-141 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:3.20.20.360 266 296 1.1E-141 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:1.10.1860.10 1 88 1.2E-33 T 23-04-2016 THIMO_RS05010 017b1ca414665f6183cb19e244476812 725 Pfam PF01274 Malate synthase 18 695 8.1E-168 T 23-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 Gene3D G3DSA:1.10.10.60 53 95 3.8E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 SMART SM00342 15 98 2.5E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 PANTHER PTHR11019 1 106 5.1E-49 T 23-04-2016 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 Pfam PF12833 Helix-turn-helix domain 21 95 7.7E-19 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 PANTHER PTHR11019:SF81 1 106 5.1E-49 T 23-04-2016 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 SUPERFAMILY SSF46689 1 49 1.25E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 Gene3D G3DSA:1.10.10.60 1 52 4.0E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS08930 aa1dd0366cd4ee271d16667e9d7f118e 107 SUPERFAMILY SSF46689 51 100 7.37E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 Pfam PF13638 PIN domain 12 164 3.8E-39 T 23-04-2016 IPR002716 PIN domain THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 SUPERFAMILY SSF88723 115 169 2.35E-14 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 SUPERFAMILY SSF88723 9 71 2.35E-14 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 Pfam PF02562 PhoH-like protein 261 456 8.2E-56 T 23-04-2016 IPR003714 PhoH-like protein GO:0005524 THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 SUPERFAMILY SSF52540 260 452 1.8E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 SUPERFAMILY SSF52540 135 196 1.8E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 Gene3D G3DSA:3.40.50.1010 115 168 1.4E-11 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 Gene3D G3DSA:3.40.50.1010 12 70 1.4E-11 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 Gene3D G3DSA:3.40.50.300 258 468 5.3E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 PANTHER PTHR30473:SF2 211 472 5.7E-181 T 23-04-2016 THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 PANTHER PTHR30473:SF2 11 192 5.7E-181 T 23-04-2016 THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 PANTHER PTHR30473 211 472 5.7E-181 T 23-04-2016 THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 PANTHER PTHR30473 11 192 5.7E-181 T 23-04-2016 THIMO_RS14120 06224bfde3867026d9ba45e067172f68 472 SMART SM00670 10 152 3.7E-11 T 23-04-2016 IPR002716 PIN domain THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 65 99 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 9.1E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 9.1E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 9.1E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 9.1E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 SUPERFAMILY SSF46785 6 141 7.86E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 Gene3D G3DSA:1.10.10.10 5 140 2.4E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 SMART SM00347 26 126 2.9E-19 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 PANTHER PTHR33164 3 150 7.7E-27 T 23-04-2016 THIMO_RS13320 dac8f8146a0745c894665839fe2625d4 150 Pfam PF01047 MarR family 37 89 1.4E-12 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 PANTHER PTHR18934 33 679 0.0 T 23-04-2016 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 Pfam PF00271 Helicase conserved C-terminal domain 266 387 7.0E-10 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 Pfam PF04408 Helicase associated domain (HA2) 451 536 1.0E-19 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 Gene3D G3DSA:3.40.50.300 59 216 3.0E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 585 676 1.4E-17 T 23-04-2016 IPR011709 Domain of unknown function DUF1605 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 SMART SM00847 448 538 5.2E-34 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 PANTHER PTHR18934:SF109 716 844 0.0 T 23-04-2016 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 PANTHER PTHR18934:SF109 33 679 0.0 T 23-04-2016 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 SMART SM00382 75 368 3.8E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 Pfam PF11898 Domain of unknown function (DUF3418) 689 1283 3.0E-213 T 23-04-2016 IPR024590 RNA helicase HrpA, C-terminal THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 PANTHER PTHR18934 716 844 0.0 T 23-04-2016 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 SMART SM00490 288 388 1.2E-14 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 2 1283 0.0 T 23-04-2016 IPR010222 RNA helicase HrpA GO:0004004 THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 Gene3D G3DSA:3.40.50.300 264 401 4.3E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 SMART SM00487 58 242 9.8E-26 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS15070 2aa3a51c42f0bf97924036d5b158a366 1287 SUPERFAMILY SSF52540 57 593 1.63E-102 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 Gene3D G3DSA:3.40.1390.20 3 134 6.4E-31 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 PANTHER PTHR30305 4 312 8.8E-103 T 23-04-2016 THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 Pfam PF02603 HPr Serine kinase N terminus 4 129 2.3E-30 T 23-04-2016 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 SUPERFAMILY SSF53795 138 300 2.14E-31 T 23-04-2016 THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 Pfam PF07475 HPr Serine kinase C-terminal domain 132 300 2.1E-60 T 23-04-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 2 308 33.688 T 23-04-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 Gene3D G3DSA:3.40.50.300 137 307 6.8E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 PANTHER PTHR30305:SF1 4 312 8.8E-103 T 23-04-2016 THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 SUPERFAMILY SSF75138 4 132 7.46E-28 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like THIMO_RS00190 ac99bcc42e4ef7208e171597a4ebcf35 327 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 4 304 2.3E-97 T 23-04-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 PANTHER PTHR12526:SF387 359 476 4.7E-81 T 23-04-2016 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5 475 2.3E-171 T 23-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 Pfam PF01050 Mannose-6-phosphate isomerase 322 472 4.7E-63 T 23-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 SUPERFAMILY SSF51182 191 476 3.56E-71 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 Pfam PF00483 Nucleotidyl transferase 7 290 6.3E-54 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 SUPERFAMILY SSF53448 5 285 1.38E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 Gene3D G3DSA:3.90.550.10 4 276 1.9E-82 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 PANTHER PTHR12526 359 476 4.7E-81 T 23-04-2016 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 PANTHER PTHR12526 155 294 4.7E-81 T 23-04-2016 THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 Gene3D G3DSA:2.60.120.10 366 476 2.8E-42 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS04660 bd4066512ff5421202a5f601b145d5b3 482 PANTHER PTHR12526:SF387 155 294 4.7E-81 T 23-04-2016 THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 Gene3D G3DSA:3.30.450.20 72 194 7.1E-29 T 23-04-2016 THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 Pfam PF13426 PAS domain 209 309 8.6E-15 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 Gene3D G3DSA:3.30.70.270 323 478 2.2E-49 T 23-04-2016 THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 PANTHER PTHR24423 72 321 3.0E-38 T 23-04-2016 THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SMART SM00091 198 264 4.6E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SMART SM00091 73 141 1.3E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SUPERFAMILY SSF55785 78 192 3.54E-29 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 Pfam PF00990 Diguanylate cyclase, GGDEF domain 322 477 1.3E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 Gene3D G3DSA:3.30.450.20 195 304 3.3E-32 T 23-04-2016 THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 Pfam PF08447 PAS fold 96 184 5.8E-23 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 202 318 1.3E-18 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 74 197 7.5E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SMART SM00267 311 483 2.6E-56 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SUPERFAMILY SSF55073 327 478 1.49E-42 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SUPERFAMILY SSF55785 187 309 1.36E-28 T 23-04-2016 IPR000014 PAS domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 318 478 8.5E-44 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SMART SM00086 270 311 6.5 T 23-04-2016 IPR001610 PAC motif THIMO_RS15730 8671d0e693ca1b614892d800f2c00cab 503 SMART SM00086 148 190 3.0E-12 T 23-04-2016 IPR001610 PAC motif THIMO_RS03085 69eb0da4c136c3fc20c1c575be7c6096 285 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 14 34 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03085 69eb0da4c136c3fc20c1c575be7c6096 285 SUPERFAMILY SSF54523 16 73 2.04E-10 T 23-04-2016 THIMO_RS03085 69eb0da4c136c3fc20c1c575be7c6096 285 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 35 2.4E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03085 69eb0da4c136c3fc20c1c575be7c6096 285 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 11 33 1.9E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 SMART SM00271 204 256 1.4E-6 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 SUPERFAMILY SSF46565 200 255 9.16E-16 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 Gene3D G3DSA:1.10.287.110 202 254 1.2E-16 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 PANTHER PTHR12763 112 255 3.8E-22 T 23-04-2016 THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 PANTHER PTHR12763:SF17 112 255 3.8E-22 T 23-04-2016 THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 Pfam PF00226 DnaJ domain 208 239 2.4E-7 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 PRINTS PR00625 DnaJ domain signature 225 240 6.8E-5 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12255 649b893adfdfd4090c2c9b884a73c2ec 256 PRINTS PR00625 DnaJ domain signature 207 225 6.8E-5 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 243 323 5.4E-20 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Gene3D G3DSA:2.40.50.140 621 697 1.8E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Gene3D G3DSA:3.30.230.70 5 227 5.8E-79 T 23-04-2016 IPR027408 PNPase/RNase PH domain THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Gene3D G3DSA:3.30.230.70 315 545 5.1E-87 T 23-04-2016 IPR027408 PNPase/RNase PH domain THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 PIRSF PIRSF005499 3 701 2.0E-291 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF55666 453 552 6.19E-27 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Gene3D G3DSA:1.10.10.400 242 314 3.3E-22 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Pfam PF00575 S1 RNA binding domain 622 693 2.7E-21 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF55666 146 237 3.17E-28 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Gene3D G3DSA:3.30.1370.10 554 620 2.7E-25 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 PANTHER PTHR11252 2 699 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 696 30.437 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Pfam PF03725 3' exoribonuclease family, domain 2 148 212 1.3E-9 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF54211 5 145 1.67E-48 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF50249 623 698 1.04E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Pfam PF00013 KH domain 559 616 4.7E-10 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SMART SM00316 623 693 2.7E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Pfam PF01138 3' exoribonuclease family, domain 1 327 459 8.8E-21 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 Pfam PF01138 3' exoribonuclease family, domain 1 16 145 1.5E-19 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SMART SM00322 555 620 8.2E-12 T 23-04-2016 IPR004087 K Homology domain GO:0003676 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 695 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF54211 296 491 8.1E-47 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF46915 241 323 1.57E-17 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 PANTHER PTHR11252:SF0 2 699 0.0 T 23-04-2016 THIMO_RS03385 c8868b4032999d55e16ee21bbff7cb41 704 SUPERFAMILY SSF54791 557 642 3.79E-23 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 Gene3D G3DSA:3.20.20.70 12 96 6.1E-4 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 PANTHER PTHR30217:SF3 240 330 4.4E-183 T 23-04-2016 THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 PANTHER PTHR30217:SF3 1 218 4.4E-183 T 23-04-2016 THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 Pfam PF01136 Peptidase family U32 76 330 5.4E-69 T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 PANTHER PTHR30217 240 330 4.4E-183 T 23-04-2016 THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 PANTHER PTHR30217 1 218 4.4E-183 T 23-04-2016 THIMO_RS05380 768bf23835966a7e1d250127c0c12673 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 351 4.9E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 198 6.0E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SMART SM00388 134 198 2.9E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SMART SM00304 79 133 3.9E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PANTHER PTHR24423:SF508 73 364 6.7E-72 T 23-04-2016 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PANTHER PTHR24423:SF508 3 9 6.7E-72 T 23-04-2016 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SUPERFAMILY SSF158472 79 131 8.63E-6 T 23-04-2016 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Pfam PF00672 HAMP domain 62 129 4.0E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Gene3D G3DSA:3.30.565.10 199 356 3.5E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 307 9.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 332 9.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 9.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 351 9.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SUPERFAMILY SSF55874 187 352 6.55E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Gene3D G3DSA:1.10.287.130 124 192 2.7E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SUPERFAMILY SSF47384 117 199 2.35E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SMART SM00387 243 354 3.1E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PANTHER PTHR24423 73 364 6.7E-72 T 23-04-2016 THIMO_RS14920 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PANTHER PTHR24423 3 9 6.7E-72 T 23-04-2016 THIMO_RS16765 67bc04779162666e0d7804add034573f 337 Gene3D G3DSA:3.30.200.20 4 93 3.0E-30 T 23-04-2016 THIMO_RS16765 67bc04779162666e0d7804add034573f 337 SUPERFAMILY SSF56112 8 302 1.75E-51 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS16765 67bc04779162666e0d7804add034573f 337 Pfam PF01636 Phosphotransferase enzyme family 26 244 7.6E-29 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase THIMO_RS16765 67bc04779162666e0d7804add034573f 337 PANTHER PTHR33540 13 327 1.4E-111 T 23-04-2016 THIMO_RS16765 67bc04779162666e0d7804add034573f 337 PANTHER PTHR33540:SF1 13 327 1.4E-111 T 23-04-2016 THIMO_RS16765 67bc04779162666e0d7804add034573f 337 Gene3D G3DSA:3.90.1200.10 95 327 7.8E-66 T 23-04-2016 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 SUPERFAMILY SSF88697 282 373 8.84E-25 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 Pfam PF00696 Amino acid kinase family 12 239 2.1E-42 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PANTHER PTHR11063 13 374 3.1E-109 T 23-04-2016 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 SUPERFAMILY SSF53633 12 263 3.4E-66 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 Hamap MF_00456 Glutamate 5-kinase [proB]. 11 264 34.814 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 Gene3D G3DSA:3.40.1160.10 6 266 3.8E-55 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 Gene3D G3DSA:2.30.130.10 280 372 1.6E-26 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 Pfam PF01472 PUA domain 283 357 2.7E-20 T 23-04-2016 IPR002478 PUA domain GO:0003723 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PANTHER PTHR11063:SF6 13 374 3.1E-109 T 23-04-2016 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PIRSF PIRSF000729 6 374 5.7E-126 T 23-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 ProSitePatterns PS00902 Glutamate 5-kinase signature. 213 230 - T 23-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 TIGRFAM TIGR01027 proB: glutamate 5-kinase 14 372 1.5E-124 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 122 143 3.1E-51 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 82 110 3.1E-51 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 154 181 3.1E-51 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 3.1E-51 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 3.1E-51 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS06305 77a376afa96d059b482fac4f75247ebd 374 SMART SM00359 283 366 8.9E-17 T 23-04-2016 IPR002478 PUA domain GO:0003723 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 PANTHER PTHR10108 1 248 5.4E-145 T 23-04-2016 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 34 49 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 23 248 7.8E-82 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 14 248 38.641 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 Gene3D G3DSA:3.40.50.150 22 245 1.2E-56 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 156 170 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 PANTHER PTHR10108:SF864 1 248 5.4E-145 T 23-04-2016 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 Pfam PF01209 ubiE/COQ5 methyltransferase family 19 248 2.9E-92 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 THIMO_RS00260 d0871c9bc014d03a136bbafca0cd2a61 249 SUPERFAMILY SSF53335 12 247 2.05E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 447 32.383 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Pfam PF12631 MnmE helical domain 122 444 9.1E-53 T 23-04-2016 IPR025867 MnmE, helical domain THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Pfam PF01926 50S ribosome-binding GTPase 218 314 2.5E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 SUPERFAMILY SSF52540 71 151 2.39E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 SUPERFAMILY SSF52540 187 365 2.39E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 PANTHER PTHR11649:SF56 8 447 5.1E-144 T 23-04-2016 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 PANTHER PTHR11649 8 447 5.1E-144 T 23-04-2016 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:3.40.50.300 213 245 3.4E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:3.30.1360.120 3 120 8.1E-40 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 SUPERFAMILY SSF116878 120 219 2.75E-44 T 23-04-2016 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 SUPERFAMILY SSF116878 373 447 2.75E-44 T 23-04-2016 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:1.20.120.430 121 181 1.0E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:1.20.120.430 246 270 1.0E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:1.20.120.430 378 447 1.0E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 447 5.9E-96 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 333 3.5E-19 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 119 2.8E-34 T 23-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal THIMO_RS17590 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:3.40.50.300 285 369 4.9E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 231 341 2.7E-8 T 23-04-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 PANTHER PTHR11669:SF8 27 227 3.7E-56 T 23-04-2016 THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 Pfam PF13177 DNA polymerase III, delta subunit 28 191 5.5E-42 T 23-04-2016 THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 Gene3D G3DSA:3.40.50.300 24 190 3.9E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 SUPERFAMILY SSF52540 22 227 5.54E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 PANTHER PTHR11669 27 227 3.7E-56 T 23-04-2016 THIMO_RS11350 65ee8421c84b64f50afb05806c83cee8 350 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 29 223 1.5E-58 T 23-04-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 Gene3D G3DSA:3.40.50.720 170 303 1.2E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 PANTHER PTHR10160 1 372 1.1E-184 T 23-04-2016 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 2.6E-147 T 23-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 23-04-2016 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 Gene3D G3DSA:3.40.50.1770 1 169 2.3E-59 T 23-04-2016 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 SMART SM01003 4 137 4.1E-74 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 SMART SM01002 149 297 8.3E-85 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 3.6E-79 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 SUPERFAMILY SSF51735 137 303 3.94E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 SUPERFAMILY SSF52283 305 360 2.13E-60 T 23-04-2016 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 SUPERFAMILY SSF52283 1 137 2.13E-60 T 23-04-2016 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 PIRSF PIRSF000183 1 371 8.8E-143 T 23-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 THIMO_RS14460 2ce11a5f80acd3222a1b31cc1992d908 376 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 1.8E-46 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal THIMO_RS16745 3c80b0325a8b2a82921b3672501e9876 496 PANTHER PTHR30029 1 491 8.0E-215 T 23-04-2016 THIMO_RS16745 3c80b0325a8b2a82921b3672501e9876 496 Pfam PF04293 SpoVR like protein 10 441 1.3E-172 T 23-04-2016 IPR007390 Sporulation stage V, protein R THIMO_RS16745 3c80b0325a8b2a82921b3672501e9876 496 PANTHER PTHR30029:SF2 1 491 8.0E-215 T 23-04-2016 THIMO_RS05640 89b0844cc30eff4f1ea8b7d6da91a7de 138 PANTHER PTHR34352 1 138 2.2E-44 T 23-04-2016 THIMO_RS05640 89b0844cc30eff4f1ea8b7d6da91a7de 138 Gene3D G3DSA:2.20.25.10 1 34 3.6E-16 T 23-04-2016 THIMO_RS05640 89b0844cc30eff4f1ea8b7d6da91a7de 138 Gene3D G3DSA:3.30.300.20 39 136 3.2E-40 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS05640 89b0844cc30eff4f1ea8b7d6da91a7de 138 SUPERFAMILY SSF82784 1 135 6.02E-39 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS05640 89b0844cc30eff4f1ea8b7d6da91a7de 138 Pfam PF02566 OsmC-like protein 34 130 2.8E-16 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 Gene3D G3DSA:3.40.50.300 178 324 1.5E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 PANTHER PTHR10925 54 661 2.3E-129 T 23-04-2016 IPR032672 TmcA/NAT10/Kre33 GO:0008080 THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 Gene3D G3DSA:3.40.630.30 410 565 3.0E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 PANTHER PTHR10925:SF6 54 661 2.3E-129 T 23-04-2016 THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 SUPERFAMILY SSF55729 405 467 2.52E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 SUPERFAMILY SSF55729 503 567 2.52E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 Pfam PF13718 GNAT acetyltransferase 2 418 532 1.4E-17 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 Pfam PF05127 Helicase 216 381 4.4E-51 T 23-04-2016 IPR007807 Helicase domain THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 28 722 47.863 T 23-04-2016 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 KEGG: 00650+2.3.1.19 THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 Pfam PF08351 Domain of unknown function (DUF1726) 74 162 2.2E-18 T 23-04-2016 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal THIMO_RS11110 865e6ecbe90248acfb12d8444a93dfbb 723 SUPERFAMILY SSF52540 191 325 2.87E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10165 315df13d3f8e5b3f99f4c3e32a48bad6 401 PANTHER PTHR10742 6 265 3.5E-21 T 23-04-2016 THIMO_RS10165 315df13d3f8e5b3f99f4c3e32a48bad6 401 Gene3D G3DSA:3.50.50.60 2 94 6.1E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10165 315df13d3f8e5b3f99f4c3e32a48bad6 401 Gene3D G3DSA:3.50.50.60 162 287 6.1E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10165 315df13d3f8e5b3f99f4c3e32a48bad6 401 Pfam PF01593 Flavin containing amine oxidoreductase 12 271 4.8E-16 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 THIMO_RS10165 315df13d3f8e5b3f99f4c3e32a48bad6 401 SUPERFAMILY SSF51905 362 383 8.26E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10165 315df13d3f8e5b3f99f4c3e32a48bad6 401 SUPERFAMILY SSF51905 6 273 8.26E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14290 4704aa9b370150353abecdd192fdac00 484 Gene3D G3DSA:3.40.50.1980 77 207 1.4E-4 T 23-04-2016 THIMO_RS14290 4704aa9b370150353abecdd192fdac00 484 TIGRFAM TIGR02015 BchY: chlorophyllide reductase subunit Y 64 483 4.5E-203 T 23-04-2016 IPR010245 Chlorophyllide reductase subunit Y GO:0015979|GO:0016021|GO:0016731|GO:0030494 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00671 THIMO_RS14290 4704aa9b370150353abecdd192fdac00 484 SUPERFAMILY SSF53807 70 471 3.04E-60 T 23-04-2016 THIMO_RS14290 4704aa9b370150353abecdd192fdac00 484 PIRSF PIRSF000163 67 484 1.0E-132 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14290 4704aa9b370150353abecdd192fdac00 484 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 77 468 1.6E-43 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS14290 4704aa9b370150353abecdd192fdac00 484 PANTHER PTHR39429 73 484 3.8E-46 T 23-04-2016 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 TIGRFAM TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein 33 295 1.7E-134 T 23-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PANTHER PTHR13696:SF74 35 285 4.2E-104 T 23-04-2016 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 SUPERFAMILY SSF52540 30 293 3.79E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 34 294 7.2E-85 T 23-04-2016 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 114 128 3.9E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 152 167 3.9E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 37 50 3.9E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 59 74 3.9E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 Gene3D G3DSA:3.40.50.300 32 293 1.4E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 153 166 - T 23-04-2016 IPR030655 NifH/chlL conserved site THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PIRSF PIRSF000363 30 297 1.7E-102 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 116 128 - T 23-04-2016 IPR030655 NifH/chlL conserved site THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 PANTHER PTHR13696 35 285 4.2E-104 T 23-04-2016 THIMO_RS14380 a2885d3464f011873e2778ebe5a1fb79 297 Hamap MF_00355 Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein [bchL]. 32 297 53.413 T 23-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 8 192 30.462 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 8 194 1.1E-69 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 Gene3D G3DSA:3.40.50.170 8 197 3.1E-64 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 SUPERFAMILY SSF53328 8 199 9.03E-59 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 PANTHER PTHR10520 12 198 1.5E-90 T 23-04-2016 THIMO_RS07795 0a0ac6552b81b3c50f29d79eb79c15bf 225 Pfam PF00551 Formyl transferase 8 186 1.5E-55 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 131 145 1.2E-57 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 309 328 1.2E-57 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 200 219 1.2E-57 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 279 294 1.2E-57 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 254 270 1.2E-57 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 162 181 1.2E-57 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PANTHER PTHR11458 7 337 1.0E-181 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 PIRSF PIRSF001415 5 337 5.6E-149 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 SUPERFAMILY SSF51569 12 336 1.47E-143 T 23-04-2016 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 SMART SM01004 11 335 4.2E-244 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 14 334 4.1E-141 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 254 266 - T 23-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS00640 91e01664243667c246b5dc676d9bb2ed 337 Gene3D G3DSA:3.20.20.70 12 336 7.9E-150 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 SMART SM00047 183 343 5.5E-29 T 23-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 PANTHER PTHR33308:SF3 182 334 2.3E-30 T 23-04-2016 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 PANTHER PTHR33308 182 334 2.3E-30 T 23-04-2016 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 Pfam PF10135 Rod binding protein 52 96 2.8E-10 T 23-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 PRINTS PR01002 Flagellar protein FlgJ signature 73 95 4.0E-9 T 23-04-2016 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 PRINTS PR01002 Flagellar protein FlgJ signature 27 50 4.0E-9 T 23-04-2016 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 PRINTS PR01002 Flagellar protein FlgJ signature 52 72 4.0E-9 T 23-04-2016 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 200 335 1.1E-20 T 23-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 THIMO_RS16620 7aca880c6e68be7b489ab7ba17cd7b76 344 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 336 5.5E-81 T 23-04-2016 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- THIMO_RS08825 3e902fabf6d34ada19d4f145f179af19 145 SUPERFAMILY SSF69500 1 144 8.63E-51 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain THIMO_RS08825 3e902fabf6d34ada19d4f145f179af19 145 Gene3D G3DSA:3.50.80.10 1 144 2.3E-51 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain THIMO_RS08825 3e902fabf6d34ada19d4f145f179af19 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 4 143 3.0E-47 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 THIMO_RS08825 3e902fabf6d34ada19d4f145f179af19 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 1.8E-50 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 THIMO_RS08825 3e902fabf6d34ada19d4f145f179af19 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 32.33 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 THIMO_RS08825 3e902fabf6d34ada19d4f145f179af19 145 PANTHER PTHR10472 2 144 9.6E-60 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 THIMO_RS02860 4224f6668e2f84aeaf59bf4a19f87f45 162 Pfam PF05685 Putative restriction endonuclease 27 138 4.5E-16 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS02860 4224f6668e2f84aeaf59bf4a19f87f45 162 SUPERFAMILY SSF52980 18 136 1.5E-19 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS02860 4224f6668e2f84aeaf59bf4a19f87f45 162 Gene3D G3DSA:3.90.1570.10 18 135 7.5E-19 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS15420 458db0519dff852c696fc14a427b9544 70 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 4 70 1.6E-21 T 23-04-2016 IPR009727 NifT/FixU GO:0009399 THIMO_RS15420 458db0519dff852c696fc14a427b9544 70 Gene3D G3DSA:2.40.50.240 3 70 1.9E-25 T 23-04-2016 IPR024044 NifT/FixU barrel-like domain THIMO_RS15420 458db0519dff852c696fc14a427b9544 70 SUPERFAMILY SSF159203 3 70 4.97E-20 T 23-04-2016 IPR024044 NifT/FixU barrel-like domain THIMO_RS15420 458db0519dff852c696fc14a427b9544 70 Pfam PF06988 NifT/FixU protein 1 66 1.4E-24 T 23-04-2016 IPR009727 NifT/FixU GO:0009399 THIMO_RS00770 76427fcfc093f0cf84f7453ba7ca9a10 223 Pfam PF01904 Protein of unknown function DUF72 23 132 5.6E-35 T 23-04-2016 IPR002763 Protein of unknown function DUF72 THIMO_RS00770 76427fcfc093f0cf84f7453ba7ca9a10 223 Gene3D G3DSA:3.20.20.410 6 136 4.5E-48 T 23-04-2016 IPR002763 Protein of unknown function DUF72 THIMO_RS00770 76427fcfc093f0cf84f7453ba7ca9a10 223 SUPERFAMILY SSF117396 6 138 7.46E-49 T 23-04-2016 IPR002763 Protein of unknown function DUF72 THIMO_RS00770 76427fcfc093f0cf84f7453ba7ca9a10 223 PANTHER PTHR30348 7 138 1.4E-49 T 23-04-2016 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 SUPERFAMILY SSF53850 3 216 1.4E-55 T 23-04-2016 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 PANTHER PTHR21403:SF0 4 289 9.7E-79 T 23-04-2016 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 3 290 27.188 T 23-04-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 Pfam PF08029 HisG, C-terminal domain 216 288 5.8E-23 T 23-04-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 Gene3D G3DSA:3.40.190.10 4 147 8.7E-35 T 23-04-2016 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 Gene3D G3DSA:3.30.70.120 219 289 6.8E-22 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 Pfam PF01634 ATP phosphoribosyltransferase 50 211 2.8E-38 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 4 189 2.7E-48 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 SUPERFAMILY SSF54913 219 289 1.78E-17 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 PANTHER PTHR21403 4 289 9.7E-79 T 23-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS06025 6a1d355017e115687567e87e5564aec0 290 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 191 289 2.4E-29 T 23-04-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 SUPERFAMILY SSF53335 5 478 5.8E-114 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 Pfam PF02384 N-6 DNA Methylase 138 444 2.9E-71 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 Pfam PF12161 HsdM N-terminal domain 6 127 1.2E-14 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 269 275 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 Gene3D G3DSA:3.40.50.150 161 390 1.3E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 295 319 4.8E-22 T 23-04-2016 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 159 175 4.8E-22 T 23-04-2016 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 197 4.8E-22 T 23-04-2016 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 266 278 4.8E-22 T 23-04-2016 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 PANTHER PTHR30195:SF2 122 373 6.9E-46 T 23-04-2016 THIMO_RS09505 2d133a30c6d9f43d907536e18b50c7c5 482 PANTHER PTHR30195 122 373 6.9E-46 T 23-04-2016 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 Gene3D G3DSA:1.20.1270.20 1 142 1.5E-41 T 23-04-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 Gene3D G3DSA:1.20.1270.20 143 215 1.2E-28 T 23-04-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 Gene3D G3DSA:3.40.50.2030 368 536 2.3E-73 T 23-04-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 Pfam PF03063 Prismane/CO dehydrogenase family 1 533 2.3E-171 T 23-04-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 538 23.163 T 23-04-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 536 2.8E-227 T 23-04-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 PANTHER PTHR30109:SF0 1 537 4.4E-277 T 23-04-2016 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 PIRSF PIRSF000076 1 539 1.2E-249 T 23-04-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 PANTHER PTHR30109 1 537 4.4E-277 T 23-04-2016 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 Gene3D G3DSA:3.40.50.2030 218 367 1.3E-68 T 23-04-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS16030 ac63a9795f2198ff07bf29bc2134745f 540 SUPERFAMILY SSF56821 1 537 2.14E-202 T 23-04-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 THIMO_RS18030 bd65ed4be8005420a970497261251042 140 PANTHER PTHR37166:SF1 12 140 2.0E-16 T 23-04-2016 THIMO_RS18030 bd65ed4be8005420a970497261251042 140 Gene3D G3DSA:3.30.160.170 60 130 2.1E-20 T 23-04-2016 IPR005186 FlaG protein THIMO_RS18030 bd65ed4be8005420a970497261251042 140 SUPERFAMILY SSF160214 58 137 1.44E-19 T 23-04-2016 IPR005186 FlaG protein THIMO_RS18030 bd65ed4be8005420a970497261251042 140 Pfam PF03646 FlaG protein 58 131 4.2E-20 T 23-04-2016 IPR005186 FlaG protein THIMO_RS18030 bd65ed4be8005420a970497261251042 140 PANTHER PTHR37166 12 140 2.0E-16 T 23-04-2016 THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 11 353 5.9E-117 T 23-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 SUPERFAMILY SSF52540 12 348 1.1E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 205 219 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 Pfam PF00437 Type II/IV secretion system protein 55 283 6.9E-41 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 SMART SM00382 134 286 0.0079 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 Gene3D G3DSA:3.40.50.300 115 354 3.3E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 PANTHER PTHR30486:SF6 10 387 9.6E-119 T 23-04-2016 THIMO_RS03110 ad36e85930c7200d95d57462e6ac11d9 392 PANTHER PTHR30486 10 387 9.6E-119 T 23-04-2016 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 Gene3D G3DSA:3.40.1280.10 1 159 2.4E-63 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 253 109.388 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 1.4E-59 T 23-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 PANTHER PTHR32125:SF1 1 227 2.4E-107 T 23-04-2016 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 SUPERFAMILY SSF75217 1 242 6.54E-96 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 PANTHER PTHR32125 1 227 2.4E-107 T 23-04-2016 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 225 9.9E-92 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 Gene3D G3DSA:1.10.1270.20 160 242 1.2E-32 T 23-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 THIMO_RS10200 cbc241c065bdc52a53bf4b581c4ccf8e 253 PIRSF PIRSF000386 1 250 2.5E-91 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 THIMO_RS10225 9a5a6bbae1e755f95d726111477cf420 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.601 T 23-04-2016 IPR003791 Protein of unknown function UPF0178 THIMO_RS10225 9a5a6bbae1e755f95d726111477cf420 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 146 1.8E-46 T 23-04-2016 IPR003791 Protein of unknown function UPF0178 THIMO_RS10225 9a5a6bbae1e755f95d726111477cf420 151 PANTHER PTHR35146 1 151 9.9E-53 T 23-04-2016 THIMO_RS10225 9a5a6bbae1e755f95d726111477cf420 151 PANTHER PTHR35146:SF1 1 151 9.9E-53 T 23-04-2016 THIMO_RS15785 115d5d73bef5f131b43db9d36743e5cb 297 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 7 291 20.169 T 23-04-2016 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 THIMO_RS15785 115d5d73bef5f131b43db9d36743e5cb 297 PANTHER PTHR13929 11 291 2.0E-68 T 23-04-2016 THIMO_RS15785 115d5d73bef5f131b43db9d36743e5cb 297 Pfam PF01040 UbiA prenyltransferase family 24 259 1.4E-34 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 THIMO_RS15785 115d5d73bef5f131b43db9d36743e5cb 297 PIRSF PIRSF005355 2 294 3.2E-79 T 23-04-2016 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 THIMO_RS15785 115d5d73bef5f131b43db9d36743e5cb 297 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 16 288 3.4E-51 T 23-04-2016 THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 Gene3D G3DSA:2.30.30.180 89 149 7.6E-14 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 Pfam PF02576 Putative ribosome maturation factor RimP 12 148 1.0E-45 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 SUPERFAMILY SSF74942 85 152 3.4E-17 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 Gene3D G3DSA:3.30.300.70 2 81 4.5E-29 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 SUPERFAMILY SSF75420 4 84 1.28E-23 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 PANTHER PTHR33867 1 152 2.3E-48 T 23-04-2016 THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 PANTHER PTHR33867:SF1 1 152 2.3E-48 T 23-04-2016 THIMO_RS03355 91db0b53c328264b3f21b34178ff6401 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 152 26.395 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 SUPERFAMILY SSF56053 84 178 7.92E-36 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 Gene3D G3DSA:3.90.930.12 84 178 2.2E-40 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 Pfam PF00347 Ribosomal protein L6 11 79 4.4E-14 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 Pfam PF00347 Ribosomal protein L6 91 165 7.4E-19 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 PANTHER PTHR11655 1 177 2.3E-83 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 SUPERFAMILY SSF56053 1 83 2.22E-21 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 Gene3D G3DSA:3.90.930.12 2 82 7.7E-26 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 1.3E-72 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 36.417 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 PANTHER PTHR11655:SF14 1 177 2.3E-83 T 23-04-2016 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 PIRSF PIRSF002162 1 178 3.5E-42 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 PRINTS PR00059 Ribosomal protein L6 signature 72 97 2.7E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 PRINTS PR00059 Ribosomal protein L6 signature 100 116 2.7E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 PRINTS PR00059 Ribosomal protein L6 signature 142 163 2.7E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13555 5ce3947d1a29c7b5c0e3be9064fab43f 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 23-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 Gene3D G3DSA:3.30.910.20 8 85 1.6E-10 T 23-04-2016 THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 SMART SM00935 4 157 2.2E-43 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 Pfam PF03938 Outer membrane protein (OmpH-like) 5 156 4.1E-31 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 Gene3D G3DSA:3.30.910.20 105 157 1.8E-18 T 23-04-2016 THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 SUPERFAMILY SSF111384 15 157 1.31E-29 T 23-04-2016 IPR024930 Skp domain THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 PANTHER PTHR35089 1 163 2.2E-31 T 23-04-2016 THIMO_RS03490 a92122bcadbbc90081b9f61a2550af0b 163 PIRSF PIRSF002094 1 159 1.3E-39 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 THIMO_RS03500 712fdc91fdaddbbe2bedc8d27ada4469 147 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 4 143 4.0E-60 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 THIMO_RS03500 712fdc91fdaddbbe2bedc8d27ada4469 147 PANTHER PTHR30272 1 147 1.0E-72 T 23-04-2016 THIMO_RS03500 712fdc91fdaddbbe2bedc8d27ada4469 147 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 4 146 35.261 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 THIMO_RS03500 712fdc91fdaddbbe2bedc8d27ada4469 147 Gene3D G3DSA:3.10.129.10 3 144 6.0E-57 T 23-04-2016 IPR029069 HotDog domain THIMO_RS03500 712fdc91fdaddbbe2bedc8d27ada4469 147 SUPERFAMILY SSF54637 3 143 4.49E-47 T 23-04-2016 IPR029069 HotDog domain THIMO_RS03500 712fdc91fdaddbbe2bedc8d27ada4469 147 Pfam PF07977 FabA-like domain 13 138 6.5E-37 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 THIMO_RS15230 0a3dbc4d057ecb001e416a654f3685cb 237 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 62 201 3.0E-31 T 23-04-2016 THIMO_RS15230 0a3dbc4d057ecb001e416a654f3685cb 237 PANTHER PTHR38601:SF1 5 224 2.4E-40 T 23-04-2016 THIMO_RS15230 0a3dbc4d057ecb001e416a654f3685cb 237 PANTHER PTHR38601 5 224 2.4E-40 T 23-04-2016 THIMO_RS01245 c518cb80fc1ff8695a770125f596e6d4 178 Gene3D G3DSA:1.20.1260.10 9 160 2.2E-25 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS01245 c518cb80fc1ff8695a770125f596e6d4 178 PANTHER PTHR33531:SF3 10 178 8.8E-28 T 23-04-2016 THIMO_RS01245 c518cb80fc1ff8695a770125f596e6d4 178 SUPERFAMILY SSF47240 4 166 1.81E-23 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS01245 c518cb80fc1ff8695a770125f596e6d4 178 Pfam PF02915 Rubrerythrin 10 154 2.4E-15 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 THIMO_RS01245 c518cb80fc1ff8695a770125f596e6d4 178 PANTHER PTHR33531 10 178 8.8E-28 T 23-04-2016 THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 SUPERFAMILY SSF53335 129 389 9.53E-75 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 PIRSF PIRSF003085 11 399 9.5E-118 T 23-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 Gene3D G3DSA:3.40.50.150 120 389 7.2E-90 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 PANTHER PTHR10108 321 399 5.1E-96 T 23-04-2016 THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 PANTHER PTHR10108 50 305 5.1E-96 T 23-04-2016 THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 PANTHER PTHR10108:SF795 321 399 5.1E-96 T 23-04-2016 THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 PANTHER PTHR10108:SF795 50 305 5.1E-96 T 23-04-2016 THIMO_RS01815 0cca0fed574f6f2d9dfe5700d734bba3 400 Pfam PF02353 Mycolic acid cyclopropane synthetase 120 385 1.6E-87 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 Gene3D G3DSA:3.30.390.10 1 116 9.1E-27 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 SMART SM00922 135 232 6.0E-13 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 PANTHER PTHR13794 1 347 1.2E-56 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 SUPERFAMILY SSF51604 124 347 6.16E-46 T 23-04-2016 IPR029065 Enolase C-terminal domain-like THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 113 7.7E-5 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 PANTHER PTHR13794:SF8 1 347 1.2E-56 T 23-04-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 9 325 3.1E-47 T 23-04-2016 THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 SUPERFAMILY SSF54826 2 113 5.3E-20 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 Gene3D G3DSA:3.20.20.120 121 348 2.0E-52 T 23-04-2016 IPR029065 Enolase C-terminal domain-like THIMO_RS15790 1a18bebe08afa6339c35ac2292431996 364 Pfam PF13378 Enolase C-terminal domain-like 145 351 5.4E-29 T 23-04-2016 IPR029065 Enolase C-terminal domain-like THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 Pfam PF01467 Cytidylyltransferase-like 360 452 8.3E-14 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 Gene3D G3DSA:3.40.50.620 355 474 1.3E-32 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 Gene3D G3DSA:3.40.1190.20 20 327 6.2E-64 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 SUPERFAMILY SSF53613 20 326 9.82E-57 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 16 325 2.0E-109 T 23-04-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 PANTHER PTHR10584 2 349 3.6E-111 T 23-04-2016 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 Pfam PF00294 pfkB family carbohydrate kinase 20 315 9.0E-43 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 347 487 3.3E-59 T 23-04-2016 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 Hamap MF_01603 Bifunctional protein HldE [hldE]. 12 489 41.545 T 23-04-2016 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 PANTHER PTHR10584:SF159 2 349 3.6E-111 T 23-04-2016 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 SUPERFAMILY SSF52374 356 486 6.82E-22 T 23-04-2016 THIMO_RS02440 74c1388eb1e1815acc3af10c66950812 494 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 357 422 1.1E-12 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PANTHER PTHR11117:SF2 1 295 3.5E-163 T 23-04-2016 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 243 256 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 Gene3D G3DSA:3.40.50.720 2 124 4.5E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 6.3E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 182 200 6.3E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 213 226 6.3E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 247 264 6.3E-36 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 295 1.9E-127 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 Pfam PF00549 CoA-ligase 156 269 3.2E-16 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 Pfam PF02629 CoA binding domain 6 102 4.9E-24 T 23-04-2016 IPR003781 CoA-binding GO:0048037 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 Gene3D G3DSA:3.40.50.261 125 294 3.4E-70 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PANTHER PTHR11117 1 295 3.5E-163 T 23-04-2016 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 157 186 - T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 PIRSF PIRSF001553 1 295 1.4E-116 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 SMART SM00881 4 103 1.0E-29 T 23-04-2016 IPR003781 CoA-binding GO:0048037 THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 SUPERFAMILY SSF51735 1 127 4.64E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01165 7005c04470b4308b5b55add5f7e6b4aa 295 SUPERFAMILY SSF52210 128 293 1.44E-52 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 Gene3D G3DSA:2.60.40.1180 612 719 1.1E-28 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 SMART SM00642 180 591 1.5E-8 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 SUPERFAMILY SSF51445 165 602 2.68E-132 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 SUPERFAMILY SSF81296 27 173 2.1E-49 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 31 119 3.4E-20 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 Pfam PF00128 Alpha amylase, catalytic domain 213 372 2.7E-10 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 SUPERFAMILY SSF51011 612 719 2.45E-25 T 23-04-2016 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 27 719 0.0 T 23-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 PANTHER PTHR10357:SF74 11 602 0.0 T 23-04-2016 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 PANTHER PTHR10357:SF74 629 720 0.0 T 23-04-2016 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 PANTHER PTHR10357 11 602 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 PANTHER PTHR10357 629 720 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 Gene3D G3DSA:2.60.40.10 27 177 3.9E-55 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS08215 5dd4b0615dc15603a6458ac53ee2c41d 744 Gene3D G3DSA:3.20.20.80 178 600 1.7E-123 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 SMART SM00357 6 69 9.0E-30 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 23-04-2016 IPR019844 Cold-shock conserved site THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 PIRSF PIRSF002599 1 69 1.5E-23 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 PRINTS PR00050 Cold shock protein signature 7 22 2.3E-16 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 PRINTS PR00050 Cold shock protein signature 42 60 2.3E-16 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 PRINTS PR00050 Cold shock protein signature 27 36 2.3E-16 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 SUPERFAMILY SSF50249 4 68 7.47E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 Gene3D G3DSA:2.40.50.140 5 68 4.5E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.5E-28 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS15815 54ea030f36805bff84d76aaafd1b945a 69 PANTHER PTHR11544 1 69 5.4E-39 T 23-04-2016 THIMO_RS03515 d813df138bdc7de9f5ce7dcb03713deb 190 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 181 36.866 T 23-04-2016 IPR022898 Ribonuclease HII GO:0004523 THIMO_RS03515 d813df138bdc7de9f5ce7dcb03713deb 190 SUPERFAMILY SSF53098 2 186 2.73E-64 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03515 d813df138bdc7de9f5ce7dcb03713deb 190 Gene3D G3DSA:3.30.420.10 2 142 6.6E-44 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03515 d813df138bdc7de9f5ce7dcb03713deb 190 PANTHER PTHR10954 1 189 1.4E-70 T 23-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 THIMO_RS03515 d813df138bdc7de9f5ce7dcb03713deb 190 Pfam PF01351 Ribonuclease HII 4 180 1.3E-38 T 23-04-2016 IPR024567 Ribonuclease HII/HIII domain THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 SUPERFAMILY SSF52402 14 252 1.35E-56 T 23-04-2016 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 Gene3D G3DSA:3.40.50.620 12 219 4.2E-92 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 Gene3D G3DSA:2.40.30.10 290 372 2.9E-25 T 23-04-2016 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 PANTHER PTHR11933 15 372 6.3E-177 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 15 370 37.381 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 PANTHER PTHR11933:SF10 15 372 6.3E-177 T 23-04-2016 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 Pfam PF03054 tRNA methyl transferase 16 369 1.3E-130 T 23-04-2016 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 16 369 6.9E-128 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 THIMO_RS10030 fb0e8ce7dd9177bef1817e3a04867497 373 Gene3D G3DSA:2.30.30.280 221 288 3.4E-29 T 23-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 PANTHER PTHR34354:SF1 8 129 2.6E-51 T 23-04-2016 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 Gene3D G3DSA:3.30.1130.10 6 121 9.5E-46 T 23-04-2016 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 SUPERFAMILY SSF55620 4 109 4.15E-26 T 23-04-2016 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 7 116 2.4E-51 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 PIRSF PIRSF027377 2 123 6.0E-53 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 129 49.519 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 Pfam PF14489 QueF-like protein 40 118 9.5E-32 T 23-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS17110 6354f07af79f573bf511b9c0cf002e71 129 PANTHER PTHR34354 8 129 2.6E-51 T 23-04-2016 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.30.1490.20 1 193 4.3E-65 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 339 2.1E-114 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 4 788 0.0 T 23-04-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 SUPERFAMILY SSF51621 459 786 1.54E-95 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 PANTHER PTHR22931 1 788 0.0 T 23-04-2016 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 SUPERFAMILY SSF52009 346 464 1.31E-32 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.50.30.10 372 470 3.4E-35 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 412 423 - T 23-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 SUPERFAMILY SSF56059 1 381 3.65E-108 T 23-04-2016 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 472 785 3.0E-59 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.30.470.20 195 340 5.4E-57 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 692 710 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Pfam PF00391 PEP-utilising enzyme, mobile domain 382 453 5.7E-25 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 PIRSF PIRSF000854 1 790 0.0 T 23-04-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.20.20.60 478 785 1.6E-100 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS10110 53ee01831176f8ec5cfe040f2988255e 790 PANTHER PTHR22931:SF7 1 788 0.0 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF00580 UvrD/REP helicase N-terminal domain 344 444 1.5E-25 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 151 1.3E-26 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF12705 PD-(D/E)XK nuclease superfamily 960 1135 6.0E-7 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF13361 UvrD-like helicase C-terminal domain 450 831 2.0E-16 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.90.320.10 914 1183 1.1E-68 T 23-04-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070 305 498 3.8E-251 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070 808 1180 3.8E-251 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070 12 81 3.8E-251 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 116 146 9.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 358 458 9.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 15 74 9.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 12 1183 4.7E-254 T 23-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 SUPERFAMILY SSF52540 12 72 7.34E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 SUPERFAMILY SSF52540 114 198 7.34E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 SUPERFAMILY SSF52540 332 839 7.34E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 3 1185 13.683 T 23-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 SUPERFAMILY SSF52980 923 1183 4.4E-62 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:1.10.3170.10 151 355 2.6E-29 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070:SF23 531 785 3.8E-251 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070:SF23 808 1180 3.8E-251 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 740 848 5.0E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 459 594 5.0E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070:SF23 305 498 3.8E-251 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070 531 785 3.8E-251 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:1.10.486.10 597 739 5.0E-39 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070:SF23 12 81 3.8E-251 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070:SF23 114 210 3.8E-251 T 23-04-2016 THIMO_RS11060 d417e2025bb762d781105bc8e5e0a299 1193 PANTHER PTHR11070 114 210 3.8E-251 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS09555 f5ebf01ee56ba1fd27f6908209c4776d 349 SUPERFAMILY SSF53850 96 321 9.42E-11 T 23-04-2016 THIMO_RS09555 f5ebf01ee56ba1fd27f6908209c4776d 349 Pfam PF13343 Bacterial extracellular solute-binding protein 88 321 1.6E-28 T 23-04-2016 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 Gene3D G3DSA:3.40.50.970 355 552 1.1E-16 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 SUPERFAMILY SSF52518 13 192 4.58E-31 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 PANTHER PTHR18968 8 568 4.1E-126 T 23-04-2016 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 16 445 4.0E-124 T 23-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 SUPERFAMILY SSF52518 376 553 1.04E-15 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 Pfam PF16582 Middle domain of thiamine pyrophosphate 221 398 3.6E-11 T 23-04-2016 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 10 566 32.048 T 23-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 PANTHER PTHR18968:SF114 8 568 4.1E-126 T 23-04-2016 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 19 184 1.3E-27 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 Gene3D G3DSA:3.40.50.970 13 188 6.6E-42 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 PIRSF PIRSF004983 7 570 5.3E-136 T 23-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15775 c5a4c7decbbbd7864548e4f61eb03ca2 572 SUPERFAMILY SSF52467 173 370 1.8E-5 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 SMART SM00100 50 171 4.1E-4 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 Gene3D G3DSA:1.10.10.10 186 256 2.7E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 SMART SM00419 200 248 2.1E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 PANTHER PTHR24567:SF22 34 277 1.3E-69 T 23-04-2016 THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 Gene3D G3DSA:2.60.120.10 46 175 9.3E-9 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 Pfam PF13545 Crp-like helix-turn-helix domain 188 254 7.9E-16 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 PANTHER PTHR24567 34 277 1.3E-69 T 23-04-2016 THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 SUPERFAMILY SSF51206 46 176 1.93E-12 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS11805 b40168bda177a89cb6215600456f5466 277 SUPERFAMILY SSF46785 186 260 6.48E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 SUPERFAMILY SSF50156 491 581 7.76E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 Gene3D G3DSA:2.30.42.10 491 575 5.6E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 SMART SM00228 496 565 1.3E-5 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 Pfam PF05299 M61 glycyl aminopeptidase 275 391 1.1E-46 T 23-04-2016 IPR007963 Peptidase M61, catalytic domain THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 PIRSF PIRSF016493 3 603 5.6E-207 T 23-04-2016 IPR024191 Peptidase M61 THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 SUPERFAMILY SSF55486 190 422 6.52E-11 T 23-04-2016 THIMO_RS00500 0e9cc6b481cf35a4f1979f5413b978d0 609 Pfam PF13180 PDZ domain 498 572 7.7E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 342 2.3E-87 T 23-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376:SF32 570 943 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376 1176 1261 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 SMART SM00663 235 514 2.3E-182 T 23-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 13 724 32.197 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 4.1E-19 T 23-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376:SF32 963 1157 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376:SF32 4 551 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376 1302 1373 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376:SF32 1176 1261 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376:SF32 1302 1373 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.50.100 1156 1210 4.0E-8 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.50.100 981 1015 4.9E-4 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1375 10.534 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376 963 1157 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376 570 943 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 485 1.8E-34 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 9.5E-77 T 23-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 PANTHER PTHR19376 4 551 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 5.5E-27 T 23-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 SUPERFAMILY SSF64484 1133 1366 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 SUPERFAMILY SSF64484 16 944 0.0 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.40.20 417 489 3.6E-37 T 23-04-2016 THIMO_RS13660 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.40.20 349 376 3.6E-37 T 23-04-2016 THIMO_RS18310 0f2a57794d709a1eb0ba7eab3b473b16 142 Pfam PF13384 Homeodomain-like domain 107 140 6.4E-6 T 23-04-2016 THIMO_RS18310 0f2a57794d709a1eb0ba7eab3b473b16 142 Gene3D G3DSA:1.10.10.10 103 139 1.2E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14010 14f29e2cbfb5a4964039d7b3e215d691 833 Hamap MF_01871 UPF0753 protein . 6 817 23.857 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 THIMO_RS14010 14f29e2cbfb5a4964039d7b3e215d691 833 PANTHER PTHR38344:SF1 1 829 3.0E-246 T 23-04-2016 THIMO_RS14010 14f29e2cbfb5a4964039d7b3e215d691 833 PANTHER PTHR38344 1 829 3.0E-246 T 23-04-2016 THIMO_RS14010 14f29e2cbfb5a4964039d7b3e215d691 833 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 11 802 4.3E-269 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 155 292 7.6E-53 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.50.261 136 290 6.6E-32 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.50.261 299 445 1.1E-17 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.50.720 5 135 7.3E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF52210 300 455 1.96E-41 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF55729 733 890 6.8E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.30.470.20 493 602 4.2E-4 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF56059 493 705 7.73E-36 T 23-04-2016 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 PANTHER PTHR11117 30 708 4.8E-257 T 23-04-2016 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 SMART SM00881 9 104 7.9E-31 T 23-04-2016 IPR003781 CoA-binding GO:0048037 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13380 CoA binding domain 15 138 9.3E-20 T 23-04-2016 IPR003781 CoA-binding GO:0048037 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.630.30 730 891 1.9E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13302 Acetyltransferase (GNAT) domain 737 883 8.6E-9 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13549 ATP-grasp domain 482 703 1.7E-75 T 23-04-2016 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 PANTHER PTHR11117:SF8 30 708 4.8E-257 T 23-04-2016 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF52210 135 291 5.1E-41 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS08645 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF51735 7 134 4.16E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 1.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 1.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 196 219 1.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 1.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 1.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 1.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 219 5.5E-74 T 23-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PANTHER PTHR30070:SF1 2 223 9.9E-60 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 Pfam PF03379 CcmB protein 6 220 5.5E-75 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PANTHER PTHR30070 2 223 9.9E-60 T 23-04-2016 THIMO_RS06500 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PIRSF PIRSF002764 1 223 5.4E-81 T 23-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria THIMO_RS15800 8539f5ab17f51f2739bf74e1d7c7dc95 498 Gene3D G3DSA:3.20.20.80 12 495 3.2E-170 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS15800 8539f5ab17f51f2739bf74e1d7c7dc95 498 PANTHER PTHR32438:SF5 6 496 3.1E-138 T 23-04-2016 THIMO_RS15800 8539f5ab17f51f2739bf74e1d7c7dc95 498 Pfam PF02446 4-alpha-glucanotransferase 21 474 9.1E-146 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 THIMO_RS15800 8539f5ab17f51f2739bf74e1d7c7dc95 498 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 8 478 2.8E-95 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 THIMO_RS15800 8539f5ab17f51f2739bf74e1d7c7dc95 498 SUPERFAMILY SSF51445 15 495 1.38E-159 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS15800 8539f5ab17f51f2739bf74e1d7c7dc95 498 PANTHER PTHR32438 6 496 3.1E-138 T 23-04-2016 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 PANTHER PTHR11117:SF2 62 289 2.3E-20 T 23-04-2016 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 PANTHER PTHR11117 62 289 2.3E-20 T 23-04-2016 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 Pfam PF02629 CoA binding domain 56 125 5.4E-6 T 23-04-2016 IPR003781 CoA-binding GO:0048037 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 Gene3D G3DSA:3.40.50.261 157 309 6.5E-20 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 Gene3D G3DSA:3.40.50.720 34 156 4.9E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 SUPERFAMILY SSF51735 31 157 2.61E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 SUPERFAMILY SSF48256 611 904 9.72E-16 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 SUPERFAMILY SSF52210 160 309 6.28E-21 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01130 ae3b879fbedcc3337cafee72467bdba9 920 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 188 294 1.5E-6 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 SUPERFAMILY SSF88697 247 304 8.57E-14 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 PANTHER PTHR13767 3 304 3.5E-122 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 304 19.268 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 212 1.4E-74 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 Gene3D G3DSA:2.30.130.10 246 304 6.0E-26 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 248 304 7.1E-21 T 23-04-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 SUPERFAMILY SSF55120 11 225 1.75E-78 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 181 5.2E-57 T 23-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 PANTHER PTHR13767:SF2 3 304 3.5E-122 T 23-04-2016 THIMO_RS03375 508c1ffcfa9a8c31aca9eba56dbef968 307 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 182 244 2.2E-18 T 23-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 Gene3D G3DSA:3.20.20.60 8 285 2.7E-100 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 PANTHER PTHR21631 1 289 3.7E-151 T 23-04-2016 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 9 291 3.3E-127 T 23-04-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 SUPERFAMILY SSF51621 6 289 1.35E-100 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 PANTHER PTHR21631:SF4 1 289 3.7E-151 T 23-04-2016 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 ProSitePatterns PS00161 Isocitrate lyase signature. 122 127 - T 23-04-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 6 292 50.052 T 23-04-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 THIMO_RS12785 1478022416f122f46ba6e72799b4c17f 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 17 254 1.3E-49 T 23-04-2016 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 362 2.6E-152 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 357 56.004 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 363 4.8E-159 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 359 4.5E-84 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 PANTHER PTHR21148:SF26 1 359 1.7E-164 T 23-04-2016 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 SUPERFAMILY SSF51713 1 360 3.4E-156 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 PANTHER PTHR21148 1 359 1.7E-164 T 23-04-2016 THIMO_RS05040 93bedc8712314ca51f79f93f5bd5494e 367 Gene3D G3DSA:3.20.20.105 1 362 3.3E-158 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.30.70.100 101 182 1.1E-18 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Pfam PF00403 Heavy-metal-associated domain 106 164 3.1E-11 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF81653 317 414 2.88E-24 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 634 810 6.3E-41 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 288 534 9.3E-40 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 ProSitePatterns PS01047 Heavy-metal-associated domain. 107 136 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Pfam PF00122 E1-E2 ATPase 287 503 6.6E-62 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF81665 772 803 2.09E-14 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF81665 259 318 2.09E-14 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF81665 415 506 2.09E-14 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 723 742 2.2E-27 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 746 758 2.2E-27 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 670 680 2.2E-27 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 364 378 2.2E-27 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 648 659 2.2E-27 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 512 526 2.2E-27 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PANTHER PTHR24093 100 831 1.9E-194 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 695 711 1.1E-5 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 723 739 1.1E-5 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 PANTHER PTHR24093:SF50 100 831 1.9E-194 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.40.50.1000 484 515 9.4E-44 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.40.50.1000 651 791 9.4E-44 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.40.1110.10 557 650 4.2E-5 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 234 826 9.8E-156 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:2.70.150.10 264 415 2.4E-25 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF55008 97 172 3.93E-19 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 514 520 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 18 94 6.2E-20 T 23-04-2016 IPR021993 Putative metal-binding domain of cation transport ATPase THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF56784 582 822 1.89E-48 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF56784 511 530 1.89E-48 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.40.1110.10 516 556 6.6E-5 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 ProSitePatterns PS01229 Hypothetical cof family signature 2. 723 745 - T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 Pfam PF00702 haloacid dehalogenase-like hydrolase 508 737 2.0E-41 T 23-04-2016 THIMO_RS06435 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 253 825 4.4E-169 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 THIMO_RS07850 a44dd10d973fef16eb28a405ad5da1c9 157 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 5 110 1.1E-47 T 23-04-2016 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR THIMO_RS07850 a44dd10d973fef16eb28a405ad5da1c9 157 Pfam PF05233 PHB accumulation regulatory domain 70 109 2.2E-17 T 23-04-2016 IPR007897 PHB accumulation regulatory THIMO_RS07850 a44dd10d973fef16eb28a405ad5da1c9 157 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 6 65 5.8E-27 T 23-04-2016 IPR012909 PHA accumulation regulator DNA-binding, N-terminal THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 15 354 70.439 T 23-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 SUPERFAMILY SSF102114 112 332 4.45E-14 T 23-04-2016 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Gene3D G3DSA:3.20.20.70 115 321 4.7E-13 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 PANTHER PTHR30544 17 357 1.4E-160 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 PIRSF PIRSF006004 11 366 3.8E-131 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 16 352 8.7E-124 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Pfam PF04055 Radical SAM superfamily 119 281 8.2E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS09055 8f8840658bca4bb0b0c81d2a2dfa02c0 374 PANTHER PTHR30544:SF5 17 357 1.4E-160 T 23-04-2016 THIMO_RS01525 ca66dfca979621c75efe70e28bacb873 336 TIGRFAM TIGR02580 cas_RAMP_Cmr4: CRISPR type III-B/RAMP module RAMP protein Cmr4 22 322 9.7E-51 T 23-04-2016 IPR013410 CRISPR-associated RAMP Cmr4 THIMO_RS01525 ca66dfca979621c75efe70e28bacb873 336 PANTHER PTHR36700 16 328 1.0E-44 T 23-04-2016 THIMO_RS01525 ca66dfca979621c75efe70e28bacb873 336 Pfam PF03787 RAMP superfamily 26 322 5.5E-21 T 23-04-2016 IPR005537 CRISPR type III-associated RAMP protein THIMO_RS00870 81ed51d2fb8851d7aba89bdf1842b1ac 203 Pfam PF00578 AhpC/TSA family 46 135 1.4E-14 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS00870 81ed51d2fb8851d7aba89bdf1842b1ac 203 PANTHER PTHR10681:SF104 49 130 1.0E-14 T 23-04-2016 THIMO_RS00870 81ed51d2fb8851d7aba89bdf1842b1ac 203 SUPERFAMILY SSF52833 18 178 7.37E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00870 81ed51d2fb8851d7aba89bdf1842b1ac 203 Gene3D G3DSA:3.40.30.10 45 185 2.7E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00870 81ed51d2fb8851d7aba89bdf1842b1ac 203 PANTHER PTHR10681 49 130 1.0E-14 T 23-04-2016 THIMO_RS12670 ece95f527a0aed7634faf639adaedf72 216 PANTHER PTHR22854:SF6 8 210 3.7E-65 T 23-04-2016 THIMO_RS12670 ece95f527a0aed7634faf639adaedf72 216 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 10 212 41.086 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 THIMO_RS12670 ece95f527a0aed7634faf639adaedf72 216 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 12 207 6.6E-46 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 THIMO_RS12670 ece95f527a0aed7634faf639adaedf72 216 SUPERFAMILY SSF51366 10 209 1.54E-57 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS12670 ece95f527a0aed7634faf639adaedf72 216 Gene3D G3DSA:3.20.20.70 9 210 2.1E-66 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS12670 ece95f527a0aed7634faf639adaedf72 216 PANTHER PTHR22854 8 210 3.7E-65 T 23-04-2016 THIMO_RS13440 b7b5b1c04d37d0a37f450065bc0958d3 124 Pfam PF13411 MerR HTH family regulatory protein 25 90 1.2E-22 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS13440 b7b5b1c04d37d0a37f450065bc0958d3 124 SMART SM00422 25 95 6.1E-11 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS13440 b7b5b1c04d37d0a37f450065bc0958d3 124 SUPERFAMILY SSF46955 23 120 2.66E-19 T 23-04-2016 IPR009061 Putative DNA-binding domain THIMO_RS13440 b7b5b1c04d37d0a37f450065bc0958d3 124 PANTHER PTHR30204:SF15 17 124 1.7E-33 T 23-04-2016 THIMO_RS13440 b7b5b1c04d37d0a37f450065bc0958d3 124 Gene3D G3DSA:1.10.1660.10 22 89 5.3E-18 T 23-04-2016 THIMO_RS13440 b7b5b1c04d37d0a37f450065bc0958d3 124 PANTHER PTHR30204 17 124 1.7E-33 T 23-04-2016 THIMO_RS00475 ca85731e302915b342c150ac04b0797e 92 PANTHER PTHR38040 3 92 8.2E-27 T 23-04-2016 THIMO_RS00475 ca85731e302915b342c150ac04b0797e 92 PANTHER PTHR38040:SF1 3 92 8.2E-27 T 23-04-2016 THIMO_RS00475 ca85731e302915b342c150ac04b0797e 92 Pfam PF04380 Membrane fusogenic activity 4 78 5.3E-28 T 23-04-2016 IPR007475 Membrane fusogenic activity THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PANTHER PTHR11469 1 547 0.0 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 Pfam PF00342 Phosphoglucose isomerase 49 539 5.6E-227 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 495 512 - T 23-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 263 276 - T 23-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 336 357 1.6E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 495 508 1.6E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 463 481 1.6E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 259 277 1.6E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 481 495 1.6E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 147 166 1.6E-54 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 43 522 42.063 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:3.40.50.10490 291 504 3.2E-138 T 23-04-2016 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:3.40.50.10490 6 95 3.2E-138 T 23-04-2016 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:3.40.50.10490 96 288 2.7E-88 T 23-04-2016 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 SUPERFAMILY SSF53697 5 545 7.51E-221 T 23-04-2016 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 PANTHER PTHR11469:SF4 1 547 0.0 T 23-04-2016 THIMO_RS16730 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:1.10.1390.10 505 546 5.5E-20 T 23-04-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 PANTHER PTHR24220 17 266 3.4E-108 T 23-04-2016 THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 SUPERFAMILY SSF52540 11 255 6.69E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 PANTHER PTHR24220:SF468 17 266 3.4E-108 T 23-04-2016 THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 Pfam PF00005 ABC transporter 33 184 2.0E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 Gene3D G3DSA:3.40.50.300 18 261 5.5E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 17 267 9.5E-112 T 23-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 THIMO_RS05520 b6182240484ac61edcd7d466bd29a003 268 SMART SM00382 40 236 3.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 PANTHER PTHR30012 2 403 8.1E-131 T 23-04-2016 THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 367 381 6.7E-20 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 6.7E-20 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 164 192 6.7E-20 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 383 402 6.7E-20 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 PANTHER PTHR30012:SF0 2 403 8.1E-131 T 23-04-2016 THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 Pfam PF00482 Type II secretion system (T2SS), protein F 70 192 3.6E-29 T 23-04-2016 IPR018076 Type II secretion system F domain THIMO_RS00200 085cdaa6583eb70b879744da20f0951b 403 Pfam PF00482 Type II secretion system (T2SS), protein F 272 393 2.8E-25 T 23-04-2016 IPR018076 Type II secretion system F domain THIMO_RS14400 764fde6c85fd32a9b0fa1389c6877204 168 TIGRFAM TIGR02020 BchF: 2-vinyl bacteriochlorophyllide hydratase 13 153 7.3E-60 T 23-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 THIMO_RS14400 764fde6c85fd32a9b0fa1389c6877204 168 Pfam PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) 14 150 7.5E-64 T 23-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 PANTHER PTHR30195:SF13 489 871 1.1E-167 T 23-04-2016 THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 PANTHER PTHR30195:SF13 6 445 1.1E-167 T 23-04-2016 THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 116 219 3.8E-10 T 23-04-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 SUPERFAMILY SSF52540 486 544 2.71E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 SUPERFAMILY SSF52540 290 444 2.71E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Pfam PF04851 Type III restriction enzyme, res subunit 291 451 1.9E-13 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Gene3D G3DSA:3.40.50.300 283 455 1.8E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Gene3D G3DSA:3.40.50.300 499 511 1.8E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 SMART SM00487 287 532 3.8E-11 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 PANTHER PTHR30195 489 871 1.1E-167 T 23-04-2016 THIMO_RS16470 2b54c22cfdedcaa0d79e4fa104a8693f 1028 PANTHER PTHR30195 6 445 1.1E-167 T 23-04-2016 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 SUPERFAMILY SSF161098 286 518 3.27E-34 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 PANTHER PTHR30183 1 527 2.9E-51 T 23-04-2016 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 Gene3D G3DSA:1.10.3720.10 9 261 8.9E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 Gene3D G3DSA:1.10.3720.10 289 518 2.1E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 346 526 2.5E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 257 2.0E-5 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS08405 7c05b6e25ffc091bfff20b4500f1581e 529 SUPERFAMILY SSF161098 3 255 6.67E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 PANTHER PTHR33370 1 72 1.3E-48 T 23-04-2016 THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 SMART SM00316 2 72 3.9E-4 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 SUPERFAMILY SSF50249 1 70 9.64E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.588 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.5E-28 T 23-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 9.4E-39 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 THIMO_RS10010 69468c024c92761fbc54af30eda7f368 72 Gene3D G3DSA:2.40.50.140 1 71 5.0E-39 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS06265 5d6559b74b5d3503542c5094de3c58b6 153 SUPERFAMILY SSF56349 1 147 6.18E-30 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS06265 5d6559b74b5d3503542c5094de3c58b6 153 Pfam PF00589 Phage integrase family 1 137 2.2E-16 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS06265 5d6559b74b5d3503542c5094de3c58b6 153 Gene3D G3DSA:1.10.443.10 1 137 1.4E-23 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS06265 5d6559b74b5d3503542c5094de3c58b6 153 PANTHER PTHR30349 1 150 1.6E-12 T 23-04-2016 THIMO_RS05340 606f69850d596a12f6560ea138795938 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 9.0E-64 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 THIMO_RS05340 606f69850d596a12f6560ea138795938 318 Gene3D G3DSA:1.10.8.300 201 314 2.5E-38 T 23-04-2016 THIMO_RS05340 606f69850d596a12f6560ea138795938 318 PANTHER PTHR11603:SF148 6 318 1.4E-137 T 23-04-2016 THIMO_RS05340 606f69850d596a12f6560ea138795938 318 PIRSF PIRSF002849 2 318 1.9E-125 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted THIMO_RS05340 606f69850d596a12f6560ea138795938 318 PANTHER PTHR11603 6 318 1.4E-137 T 23-04-2016 THIMO_RS05340 606f69850d596a12f6560ea138795938 318 Gene3D G3DSA:3.40.50.300 17 182 5.8E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05340 606f69850d596a12f6560ea138795938 318 SUPERFAMILY SSF52540 8 291 1.11E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.295 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 PANTHER PTHR11661 1 142 1.4E-68 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-15 T 23-04-2016 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 2.6E-64 T 23-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 SUPERFAMILY SSF46906 68 141 1.18E-24 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 Gene3D G3DSA:1.10.10.250 73 141 2.2E-29 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 SMART SM00649 9 141 7.3E-81 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 1.5E-30 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 SUPERFAMILY SSF54747 3 73 1.19E-30 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.1E-22 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13685 6679c7fffc185cdd2b4d4e462cff30f7 144 Gene3D G3DSA:3.30.1550.10 2 72 1.7E-38 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal THIMO_RS09985 6815be8af0682fdf708f928750dacdd9 194 PANTHER PTHR11839 3 185 8.2E-70 T 23-04-2016 THIMO_RS09985 6815be8af0682fdf708f928750dacdd9 194 ProSitePatterns PS00893 Nudix box signature. 77 98 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 THIMO_RS09985 6815be8af0682fdf708f928750dacdd9 194 PANTHER PTHR11839:SF12 3 185 8.2E-70 T 23-04-2016 THIMO_RS09985 6815be8af0682fdf708f928750dacdd9 194 Pfam PF00293 NUDIX domain 45 157 3.4E-16 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS09985 6815be8af0682fdf708f928750dacdd9 194 Gene3D G3DSA:3.90.79.10 6 181 7.4E-38 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS09985 6815be8af0682fdf708f928750dacdd9 194 SUPERFAMILY SSF55811 5 177 2.84E-36 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS14205 d0a82fd8b8e9f78b1366d0437556838d 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 7.6E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14205 d0a82fd8b8e9f78b1366d0437556838d 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 2.7E-7 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14205 d0a82fd8b8e9f78b1366d0437556838d 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 2.7E-7 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14205 d0a82fd8b8e9f78b1366d0437556838d 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 2.7E-7 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14205 d0a82fd8b8e9f78b1366d0437556838d 64 SUPERFAMILY SSF56918 1 47 6.54E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14205 d0a82fd8b8e9f78b1366d0437556838d 64 Gene3D G3DSA:1.20.5.890 1 42 1.6E-18 T 23-04-2016 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 4 298 30.62 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 91 2.9E-20 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 298 1.9E-114 T 23-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 Gene3D G3DSA:1.10.443.10 113 290 8.9E-58 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 Gene3D G3DSA:1.10.150.130 8 101 3.1E-27 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 SUPERFAMILY SSF56349 18 289 3.83E-61 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 298 57.868 T 23-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 PANTHER PTHR30349:SF5 7 298 2.2E-110 T 23-04-2016 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 PANTHER PTHR30349 7 298 2.2E-110 T 23-04-2016 THIMO_RS07080 e4fd4287e84b185ac23f764ac1260d91 298 Pfam PF00589 Phage integrase family 113 283 1.0E-49 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 PANTHER PTHR30537 1 297 1.7E-90 T 23-04-2016 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 Gene3D G3DSA:3.40.190.10 92 177 2.6E-20 T 23-04-2016 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 Gene3D G3DSA:3.40.190.10 178 265 1.4E-14 T 23-04-2016 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 Pfam PF03466 LysR substrate binding domain 88 297 5.9E-37 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 PANTHER PTHR30537:SF5 1 297 1.7E-90 T 23-04-2016 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 Gene3D G3DSA:1.10.10.10 3 87 2.3E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 SUPERFAMILY SSF53850 89 300 6.52E-38 T 23-04-2016 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.7E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS01910 cf1fe83eeee7cd1f69ac939250358666 313 SUPERFAMILY SSF46785 3 87 2.52E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02930 49eadd39a71b811d7f37b34a8eb1f41d 465 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 14 451 28.722 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS02930 49eadd39a71b811d7f37b34a8eb1f41d 465 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 18 451 3.0E-138 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS02930 49eadd39a71b811d7f37b34a8eb1f41d 465 PANTHER PTHR30008 9 463 9.1E-160 T 23-04-2016 THIMO_RS02930 49eadd39a71b811d7f37b34a8eb1f41d 465 PANTHER PTHR30008:SF0 9 463 9.1E-160 T 23-04-2016 THIMO_RS02930 49eadd39a71b811d7f37b34a8eb1f41d 465 Pfam PF02601 Exonuclease VII, large subunit 133 448 2.1E-92 T 23-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 THIMO_RS02930 49eadd39a71b811d7f37b34a8eb1f41d 465 Pfam PF13742 OB-fold nucleic acid binding domain 17 109 6.8E-29 T 23-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 246 274 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 9 304 34.597 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 SUPERFAMILY SSF52440 10 102 1.92E-28 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 PIRSF PIRSF039102 50 306 4.4E-79 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 SUPERFAMILY SSF56059 102 300 4.21E-56 T 23-04-2016 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 PANTHER PTHR23132:SF0 1 301 3.2E-87 T 23-04-2016 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Pfam PF01820 D-ala D-ala ligase N-terminus 10 92 3.7E-19 T 23-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 10 303 6.6E-99 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 69 80 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.40.50.20 10 90 2.0E-26 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Pfam PF07478 D-ala D-ala ligase C-terminus 109 301 4.6E-53 T 23-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 PANTHER PTHR23132 1 301 3.2E-87 T 23-04-2016 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.30.470.20 179 303 1.2E-47 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.30.470.20 91 109 1.2E-47 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS14765 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.30.1490.20 113 178 3.7E-19 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS06365 c424bb0a948625302810aaeac0f17b05 249 Pfam PF01975 Survival protein SurE 3 182 9.1E-58 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 THIMO_RS06365 c424bb0a948625302810aaeac0f17b05 249 SUPERFAMILY SSF64167 1 245 2.49E-85 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 THIMO_RS06365 c424bb0a948625302810aaeac0f17b05 249 Gene3D G3DSA:3.40.1210.10 1 246 4.0E-87 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 THIMO_RS06365 c424bb0a948625302810aaeac0f17b05 249 PANTHER PTHR30457 1 245 3.1E-91 T 23-04-2016 THIMO_RS06365 c424bb0a948625302810aaeac0f17b05 249 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 248 40.035 T 23-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 THIMO_RS06365 c424bb0a948625302810aaeac0f17b05 249 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 233 1.3E-67 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 Gene3D G3DSA:3.90.1530.10 41 142 3.6E-39 T 23-04-2016 THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 Pfam PF02195 ParB-like nuclease domain 47 136 5.7E-28 T 23-04-2016 IPR003115 ParB/Sulfiredoxin THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 SUPERFAMILY SSF109709 129 237 6.28E-33 T 23-04-2016 THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 43 215 1.1E-60 T 23-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 PANTHER PTHR33375 41 304 2.4E-96 T 23-04-2016 THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 SMART SM00470 46 136 3.8E-37 T 23-04-2016 IPR003115 ParB/Sulfiredoxin THIMO_RS05560 ae0d156614e4b9cd443fe16899e9939f 305 SUPERFAMILY SSF110849 45 138 4.19E-29 T 23-04-2016 IPR003115 ParB/Sulfiredoxin THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:3.30.1360.30 280 418 1.5E-45 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 120 563 1.2E-109 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 1.5E-18 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Pfam PF02938 GAD domain 311 411 5.0E-27 T 23-04-2016 IPR029351 GAD domain THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 568 37.327 T 23-04-2016 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PANTHER PTHR22594 375 576 6.3E-256 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PANTHER PTHR22594 1 300 6.3E-256 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 479 495 1.9E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 1.9E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 1.9E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 523 537 1.9E-26 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF55681 116 295 4.61E-110 T 23-04-2016 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF55681 429 588 4.61E-110 T 23-04-2016 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF50249 1 105 4.57E-35 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:2.40.50.140 1 108 2.6E-40 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF55261 293 424 7.03E-41 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:3.30.930.10 134 279 1.5E-115 T 23-04-2016 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:3.30.930.10 419 589 1.5E-115 T 23-04-2016 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 587 8.7E-250 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PANTHER PTHR22594:SF5 375 576 6.3E-256 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 THIMO_RS14495 efb568fbca2dd08ba272ad779506d3b8 592 PANTHER PTHR22594:SF5 1 300 6.3E-256 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 PANTHER PTHR11071 1 162 4.4E-73 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 SUPERFAMILY SSF50891 2 161 1.1E-58 T 23-04-2016 IPR029000 Cyclophilin-like domain THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 PIRSF PIRSF001467 1 162 4.0E-28 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 1.7E-11 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 1.7E-11 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 1.7E-11 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 Gene3D G3DSA:2.40.100.10 2 161 4.3E-54 T 23-04-2016 IPR029000 Cyclophilin-like domain THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 PANTHER PTHR11071:SF192 1 162 4.4E-73 T 23-04-2016 THIMO_RS01595 f7a187b2fb96823097e9939b354e6fec 162 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 158 2.5E-49 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS01000 d84678df187cee797df85d133a3c1a9e 169 SUPERFAMILY SSF101307 19 165 3.53E-41 T 23-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 THIMO_RS01000 d84678df187cee797df85d133a3c1a9e 169 Pfam PF04608 Phosphatidylglycerophosphatase A 25 163 3.9E-50 T 23-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 THIMO_RS01000 d84678df187cee797df85d133a3c1a9e 169 PIRSF PIRSF006162 16 169 2.6E-47 T 23-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 THIMO_RS01000 d84678df187cee797df85d133a3c1a9e 169 PANTHER PTHR36305 10 169 1.6E-59 T 23-04-2016 THIMO_RS16770 3a136bb72c5a588120370150ebe105ab 186 Pfam PF05685 Putative restriction endonuclease 16 170 1.1E-33 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS16770 3a136bb72c5a588120370150ebe105ab 186 Gene3D G3DSA:3.90.1570.10 13 168 3.6E-18 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS16770 3a136bb72c5a588120370150ebe105ab 186 PANTHER PTHR35400 16 185 7.2E-44 T 23-04-2016 THIMO_RS16770 3a136bb72c5a588120370150ebe105ab 186 SUPERFAMILY SSF52980 10 160 2.57E-22 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS16770 3a136bb72c5a588120370150ebe105ab 186 PANTHER PTHR35400:SF1 16 185 7.2E-44 T 23-04-2016 THIMO_RS03080 7f36e135e8e7c87b085003baf4c2c351 336 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 19 43 1.6E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03080 7f36e135e8e7c87b085003baf4c2c351 336 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 22 44 1.6E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03080 7f36e135e8e7c87b085003baf4c2c351 336 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 23 43 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03080 7f36e135e8e7c87b085003baf4c2c351 336 SUPERFAMILY SSF54523 25 106 8.63E-11 T 23-04-2016 THIMO_RS03080 7f36e135e8e7c87b085003baf4c2c351 336 Gene3D G3DSA:3.30.700.10 25 107 2.6E-7 T 23-04-2016 THIMO_RS18010 ec6fb4683814ec357831a93433aa4f5d 366 SUPERFAMILY SSF53756 5 304 4.76E-22 T 23-04-2016 THIMO_RS18010 ec6fb4683814ec357831a93433aa4f5d 366 Gene3D G3DSA:3.40.50.2000 182 264 4.8E-4 T 23-04-2016 THIMO_RS18010 ec6fb4683814ec357831a93433aa4f5d 366 Pfam PF13692 Glycosyl transferases group 1 183 295 3.3E-13 T 23-04-2016 THIMO_RS06050 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 Hamap MF_00460 Protein RnfH [rnfH]. 1 83 19.589 T 23-04-2016 IPR005346 RnfH protein THIMO_RS06050 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 SUPERFAMILY SSF54285 1 75 7.63E-24 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp THIMO_RS06050 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 Gene3D G3DSA:3.10.20.280 1 77 4.4E-27 T 23-04-2016 IPR005346 RnfH protein THIMO_RS06050 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 PANTHER PTHR37483 1 76 2.9E-23 T 23-04-2016 THIMO_RS06050 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 Pfam PF03658 RnfH family Ubiquitin 1 77 1.4E-29 T 23-04-2016 IPR005346 RnfH protein THIMO_RS06050 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 PANTHER PTHR37483:SF1 1 76 2.9E-23 T 23-04-2016 THIMO_RS02880 0edcbab2129acb313c7daf8a16b4d2d1 366 PANTHER PTHR12169:SF11 9 357 1.0E-140 T 23-04-2016 THIMO_RS02880 0edcbab2129acb313c7daf8a16b4d2d1 366 SUPERFAMILY SSF52540 57 191 1.07E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02880 0edcbab2129acb313c7daf8a16b4d2d1 366 Pfam PF03969 AFG1-like ATPase 14 357 6.4E-124 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 THIMO_RS02880 0edcbab2129acb313c7daf8a16b4d2d1 366 Gene3D G3DSA:3.40.50.300 47 172 6.4E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02880 0edcbab2129acb313c7daf8a16b4d2d1 366 PANTHER PTHR12169 9 357 1.0E-140 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:1.20.272.10 247 345 1.3E-43 T 23-04-2016 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 55 162 6.8E-16 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 SUPERFAMILY SSF52540 16 240 1.64E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 SUPERFAMILY SSF48019 250 432 2.32E-73 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:3.40.50.300 17 155 3.8E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 PANTHER PTHR13779:SF7 15 438 1.1E-198 T 23-04-2016 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Pfam PF16193 AAA C-terminal domain 191 265 2.2E-22 T 23-04-2016 IPR032423 AAA ATPase, C-terminal domain THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:1.10.8.60 156 238 1.9E-10 T 23-04-2016 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 PANTHER PTHR13779 15 438 1.1E-198 T 23-04-2016 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Pfam PF12002 MgsA AAA+ ATPase C terminal 266 432 4.8E-66 T 23-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:1.10.3710.10 346 440 6.0E-33 T 23-04-2016 THIMO_RS11685 e405513ad0fc015d0096b2f0bfbd8f8a 454 SMART SM00382 51 168 1.4E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS05510 0cd2706b7b90eb88f9b63fc95739a44f 325 PANTHER PTHR30425:SF1 25 325 1.3E-102 T 23-04-2016 THIMO_RS05510 0cd2706b7b90eb88f9b63fc95739a44f 325 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 28 313 6.2E-90 T 23-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 THIMO_RS05510 0cd2706b7b90eb88f9b63fc95739a44f 325 SUPERFAMILY SSF161098 41 309 5.05E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS05510 0cd2706b7b90eb88f9b63fc95739a44f 325 Gene3D G3DSA:1.10.3720.10 35 315 1.8E-38 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS05510 0cd2706b7b90eb88f9b63fc95739a44f 325 PANTHER PTHR30425 25 325 1.3E-102 T 23-04-2016 THIMO_RS05510 0cd2706b7b90eb88f9b63fc95739a44f 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 321 7.7E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS02865 35efc47b4bb2bcd56df48998059e4d89 190 Pfam PF07705 CARDB 100 183 2.4E-5 T 23-04-2016 IPR011635 CARDB domain THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 TIGRFAM TIGR01273 speA: arginine decarboxylase 8 629 7.0E-230 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 Gene3D G3DSA:3.20.20.10 70 327 3.1E-61 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 SUPERFAMILY SSF51419 69 343 2.06E-64 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 SUPERFAMILY SSF50621 454 556 2.16E-6 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 237 250 8.5E-16 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 537 550 8.5E-16 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 331 350 8.5E-16 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 100 118 8.5E-16 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 121 133 8.5E-16 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PANTHER PTHR11482 433 594 3.5E-224 T 23-04-2016 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PANTHER PTHR11482 9 364 3.5E-224 T 23-04-2016 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 Gene3D G3DSA:2.40.37.10 446 556 4.0E-14 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 Gene3D G3DSA:2.40.37.10 328 354 4.0E-14 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 100 118 - T 23-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PANTHER PTHR11482:SF36 433 594 3.5E-224 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PANTHER PTHR11482:SF36 9 364 3.5E-224 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 92 106 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 458 479 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 68 83 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 144 159 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 170 191 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 483 508 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 194 216 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 321 338 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 537 558 1.5E-66 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 275 288 - T 23-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 PIRSF PIRSF001336 3 630 1.6E-223 T 23-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 347 556 1.3E-24 T 23-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS12275 367b24c6db6217231ebcdc2221f13dad 630 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 79 342 8.0E-50 T 23-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 200 1.6E-19 T 23-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 Gene3D G3DSA:3.60.21.10 1 227 2.6E-41 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 PANTHER PTHR11124 108 278 5.2E-38 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 PANTHER PTHR11124 1 76 5.2E-38 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 SUPERFAMILY SSF56300 1 226 7.08E-36 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 PANTHER PTHR11124:SF2 108 278 5.2E-38 T 23-04-2016 THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 PANTHER PTHR11124:SF2 1 76 5.2E-38 T 23-04-2016 THIMO_RS13085 67b86e07b30a2b0bca5267c18923916b 278 PIRSF PIRSF000883 1 230 3.2E-34 T 23-04-2016 IPR011152 Phosphoesterase MJ0912 THIMO_RS05155 1038adc60103983a9b6bebdef1c2fdb5 154 Pfam PF04390 Lipopolysaccharide-assembly 2 149 1.9E-13 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 THIMO_RS05155 1038adc60103983a9b6bebdef1c2fdb5 154 PANTHER PTHR38098:SF1 1 154 9.6E-18 T 23-04-2016 THIMO_RS05155 1038adc60103983a9b6bebdef1c2fdb5 154 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 1 154 20.798 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 THIMO_RS05155 1038adc60103983a9b6bebdef1c2fdb5 154 Gene3D G3DSA:3.30.160.150 10 151 1.2E-37 T 23-04-2016 THIMO_RS05155 1038adc60103983a9b6bebdef1c2fdb5 154 PANTHER PTHR38098 1 154 9.6E-18 T 23-04-2016 THIMO_RS05370 8bf67dec3eff876d4582a872a9e01c52 101 Gene3D G3DSA:2.102.10.10 1 100 9.0E-33 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS05370 8bf67dec3eff876d4582a872a9e01c52 101 SUPERFAMILY SSF50022 2 100 1.83E-29 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS05370 8bf67dec3eff876d4582a872a9e01c52 101 PANTHER PTHR21496 1 99 5.3E-23 T 23-04-2016 THIMO_RS05370 8bf67dec3eff876d4582a872a9e01c52 101 Pfam PF00355 Rieske [2Fe-2S] domain 4 85 5.3E-19 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 926 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Pfam PF08264 Anticodon-binding domain of tRNA 667 820 3.1E-43 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.90.740.10 195 359 1.0E-39 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:1.10.287.380 873 943 4.7E-11 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF46589 879 943 4.76E-15 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Hamap MF_02004 Valine--tRNA ligase [valS]. 2 944 15.855 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PANTHER PTHR11946:SF5 601 855 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PANTHER PTHR11946:SF5 875 942 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PANTHER PTHR11946:SF5 2 563 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF52374 602 634 1.65E-132 T 23-04-2016 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF52374 3 190 1.65E-132 T 23-04-2016 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF52374 364 564 1.65E-132 T 23-04-2016 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 879 943 1.8E-16 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 468 489 2.0E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 499 517 2.0E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 37 48 2.0E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 2.0E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 368 381 2.0E-38 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF47323 635 893 9.72E-72 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF50677 192 362 1.57E-49 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PANTHER PTHR11946 601 855 0.0 T 23-04-2016 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PANTHER PTHR11946 875 942 0.0 T 23-04-2016 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PANTHER PTHR11946 2 563 0.0 T 23-04-2016 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 55 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 624 1.9E-192 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:1.10.730.10 625 811 9.4E-66 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.40.50.620 602 623 3.8E-138 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.40.50.620 363 564 3.8E-138 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS15845 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.40.50.620 4 194 3.8E-138 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 268 25.661 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 268 7.9E-34 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 PIRSF PIRSF000193 3 271 4.3E-75 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 3.2E-19 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 PANTHER PTHR11645 1 275 1.4E-104 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 PANTHER PTHR11645:SF0 1 275 1.4E-104 T 23-04-2016 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 SUPERFAMILY SSF51735 6 161 1.93E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 Gene3D G3DSA:1.10.3730.10 163 267 2.3E-34 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 Gene3D G3DSA:3.40.50.720 2 161 1.0E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 SUPERFAMILY SSF48179 163 271 9.69E-35 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS03595 954a4c9001763a41ca0e171cc8d9ec98 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 268 1.1E-74 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 Pfam PF02416 mttA/Hcf106 family 4 34 2.7E-8 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 72 8.2E-24 T 23-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 114 16.239 T 23-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 PANTHER PTHR33162 1 75 6.5E-23 T 23-04-2016 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 3.0E-21 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 3.0E-21 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 3.0E-21 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 THIMO_RS08855 e512640743a5ca9a6e3167fb58bb20fd 115 PANTHER PTHR33162:SF4 1 75 6.5E-23 T 23-04-2016 THIMO_RS10130 a832111197386320ed63d8a44aba96a9 288 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 121 1.6E-22 T 23-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 THIMO_RS10130 a832111197386320ed63d8a44aba96a9 288 Gene3D G3DSA:3.40.50.10330 2 93 8.1E-5 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS10130 a832111197386320ed63d8a44aba96a9 288 SUPERFAMILY SSF111331 1 288 1.07E-65 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain THIMO_RS10130 a832111197386320ed63d8a44aba96a9 288 PANTHER PTHR12358 1 288 1.7E-44 T 23-04-2016 THIMO_RS10130 a832111197386320ed63d8a44aba96a9 288 SMART SM00046 4 125 8.4E-10 T 23-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 THIMO_RS10130 a832111197386320ed63d8a44aba96a9 288 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 5 288 7.5E-46 T 23-04-2016 IPR005218 Diacylglycerol/lipid kinase THIMO_RS00700 cfadd05752c4049af2b86fdbf131995f 130 SUPERFAMILY SSF75169 1 128 1.41E-39 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS00700 cfadd05752c4049af2b86fdbf131995f 130 PANTHER PTHR34874:SF1 1 130 4.1E-54 T 23-04-2016 THIMO_RS00700 cfadd05752c4049af2b86fdbf131995f 130 Pfam PF02635 DsrE/DsrF-like family 1 128 3.8E-29 T 23-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein THIMO_RS00700 cfadd05752c4049af2b86fdbf131995f 130 PANTHER PTHR34874 1 130 4.1E-54 T 23-04-2016 THIMO_RS00700 cfadd05752c4049af2b86fdbf131995f 130 Gene3D G3DSA:3.40.1260.10 1 128 6.1E-29 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS00700 cfadd05752c4049af2b86fdbf131995f 130 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 128 9.5E-51 T 23-04-2016 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 Hamap MF_00206 Lipoyl synthase [lipA]. 1 327 146.422 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 Gene3D G3DSA:3.20.20.70 56 317 4.4E-68 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 Pfam PF04055 Radical SAM superfamily 94 254 3.5E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 PIRSF PIRSF005963 5 330 6.4E-125 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 SMART SM00729 87 297 4.6E-9 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 TIGRFAM TIGR00510 lipA: lipoyl synthase 35 320 2.4E-123 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 SUPERFAMILY SSF102114 54 319 2.75E-63 T 23-04-2016 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 PANTHER PTHR10949 22 318 4.7E-162 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS06445 369fadd874cfb4afa4b22b20e96ef153 332 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 34 76 1.2E-8 T 23-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS11355 76b5b55958ecccd9bee928279041dfca 212 PANTHER PTHR10344 3 206 1.3E-65 T 23-04-2016 THIMO_RS11355 76b5b55958ecccd9bee928279041dfca 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 4 190 5.2E-50 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 THIMO_RS11355 76b5b55958ecccd9bee928279041dfca 212 Hamap MF_00165 Thymidylate kinase [tmk]. 6 207 29.962 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 THIMO_RS11355 76b5b55958ecccd9bee928279041dfca 212 SUPERFAMILY SSF52540 4 205 1.98E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11355 76b5b55958ecccd9bee928279041dfca 212 Gene3D G3DSA:3.40.50.300 5 205 1.0E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11355 76b5b55958ecccd9bee928279041dfca 212 Pfam PF02223 Thymidylate kinase 10 190 7.5E-47 T 23-04-2016 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Pfam PF00575 S1 RNA binding domain 646 717 5.1E-21 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Gene3D G3DSA:3.30.420.140 323 447 4.9E-47 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SUPERFAMILY SSF53098 318 466 1.44E-46 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SMART SM00316 646 717 4.8E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Gene3D G3DSA:2.40.50.140 639 717 1.3E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Pfam PF12836 Helix-hairpin-helix motif 488 552 6.3E-23 T 23-04-2016 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Pfam PF16921 Tex protein YqgF-like domain 324 448 1.1E-48 T 23-04-2016 IPR032639 Tex protein, YqgF-like domain THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Gene3D G3DSA:1.10.150.310 496 627 3.3E-41 T 23-04-2016 IPR023097 Tex RuvX-like domain THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Gene3D G3DSA:1.10.10.650 3 108 5.5E-46 T 23-04-2016 IPR023319 Tex-like protein, HTH domain THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SMART SM00732 322 421 1.3E-28 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SUPERFAMILY SSF47781 557 629 8.45E-19 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SUPERFAMILY SSF158832 2 317 7.19E-116 T 23-04-2016 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 PANTHER PTHR10724:SF1 1 762 0.0 T 23-04-2016 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 PANTHER PTHR10724 1 762 0.0 T 23-04-2016 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SUPERFAMILY SSF47781 467 555 3.89E-24 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 SUPERFAMILY SSF50249 635 723 5.15E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Gene3D G3DSA:1.10.3500.10 448 495 2.7E-98 T 23-04-2016 IPR023323 Tex-like domain THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Gene3D G3DSA:1.10.3500.10 109 318 2.7E-98 T 23-04-2016 IPR023323 Tex-like domain THIMO_RS01640 8f6502969651c6d61e64c0c41bc72ebe 781 Pfam PF09371 Tex-like protein N-terminal domain 8 191 6.4E-68 T 23-04-2016 IPR018974 Tex-like protein, N-terminal THIMO_RS15220 821c49266b86e6a2fa03a56992e97c81 670 PANTHER PTHR22773 1 610 2.4E-184 T 23-04-2016 THIMO_RS15220 821c49266b86e6a2fa03a56992e97c81 670 PANTHER PTHR22773:SF91 1 610 2.4E-184 T 23-04-2016 THIMO_RS15220 821c49266b86e6a2fa03a56992e97c81 670 Pfam PF00361 Proton-conducting membrane transporter 136 421 1.7E-60 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS15220 821c49266b86e6a2fa03a56992e97c81 670 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 173 197 4.32E-7 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS15220 821c49266b86e6a2fa03a56992e97c81 670 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 242 266 4.32E-7 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS15220 821c49266b86e6a2fa03a56992e97c81 670 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 393 419 4.32E-7 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS04610 9b2e04e63737a76565fe856401c3a5e2 181 SMART SM00834 1 43 1.4E-8 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain THIMO_RS04610 9b2e04e63737a76565fe856401c3a5e2 181 PANTHER PTHR34404:SF3 2 142 1.6E-37 T 23-04-2016 THIMO_RS04610 9b2e04e63737a76565fe856401c3a5e2 181 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 50 2.2E-12 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain THIMO_RS04610 9b2e04e63737a76565fe856401c3a5e2 181 PANTHER PTHR34404 2 142 1.6E-37 T 23-04-2016 THIMO_RS04610 9b2e04e63737a76565fe856401c3a5e2 181 Pfam PF09723 Zinc ribbon domain 1 38 5.8E-9 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain THIMO_RS15960 971085fb15c18be615678b0f0c1cee42 190 Pfam PF02525 Flavodoxin-like fold 1 154 8.9E-32 T 23-04-2016 IPR003680 Flavodoxin-like fold THIMO_RS15960 971085fb15c18be615678b0f0c1cee42 190 PANTHER PTHR10204 1 135 6.5E-25 T 23-04-2016 THIMO_RS15960 971085fb15c18be615678b0f0c1cee42 190 PANTHER PTHR10204:SF0 1 135 6.5E-25 T 23-04-2016 THIMO_RS15960 971085fb15c18be615678b0f0c1cee42 190 Gene3D G3DSA:3.40.50.360 1 189 3.2E-35 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS15960 971085fb15c18be615678b0f0c1cee42 190 SUPERFAMILY SSF52218 1 189 3.52E-35 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS06675 e2030476b425c4cfa64206d6f49c71a9 255 Pfam PF14342 Domain of unknown function (DUF4396) 111 242 1.7E-33 T 23-04-2016 IPR025509 Domain of unknown function DUF4396 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 Gene3D G3DSA:2.60.40.10 354 473 9.7E-25 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 Gene3D G3DSA:3.30.70.20 223 274 4.9E-4 T 23-04-2016 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 Gene3D G3DSA:3.30.70.20 275 305 1.4E-4 T 23-04-2016 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 PANTHER PTHR24960:SF45 2 392 9.5E-94 T 23-04-2016 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 SUPERFAMILY SSF54862 107 127 1.0E-22 T 23-04-2016 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 SUPERFAMILY SSF54862 173 324 1.0E-22 T 23-04-2016 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 354 473 8.6E-25 T 23-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 PANTHER PTHR24960 2 392 9.5E-94 T 23-04-2016 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 Pfam PF13746 4Fe-4S dicluster domain 218 321 3.7E-37 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 41 473 5.6E-138 T 23-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 269 280 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS06425 e5992b38dbbaa95f5e2fe08af288126a 473 Pfam PF12801 4Fe-4S binding domain 95 135 7.6E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 759 1.7E-242 T 23-04-2016 THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 PANTHER PTHR30591:SF1 1 1077 1.1E-216 T 23-04-2016 THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 PIRSF PIRSF000980 1 1082 3.2E-299 T 23-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 SUPERFAMILY SSF52540 325 766 4.78E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1084 12.421 T 23-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 SUPERFAMILY SSF52980 787 1076 5.2E-62 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 Gene3D G3DSA:1.10.10.160 89 172 4.1E-23 T 23-04-2016 IPR013986 DExx box DNA helicase domain THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 SUPERFAMILY SSF52540 1 315 3.72E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1040 8.4E-279 T 23-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 THIMO_RS11065 5811ed6f9983e9d03f1978a7cb694448 1085 PANTHER PTHR30591 1 1077 1.1E-216 T 23-04-2016 THIMO_RS16490 3fe266c2b953e56c5365cb66e8d87bdc 683 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 133 664 1.8E-175 T 23-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 THIMO_RS16490 3fe266c2b953e56c5365cb66e8d87bdc 683 Gene3D G3DSA:3.20.70.20 138 666 2.9E-202 T 23-04-2016 THIMO_RS16490 3fe266c2b953e56c5365cb66e8d87bdc 683 Pfam PF03477 ATP cone domain 14 103 2.0E-19 T 23-04-2016 IPR005144 ATP-cone domain THIMO_RS16490 3fe266c2b953e56c5365cb66e8d87bdc 683 SUPERFAMILY SSF51998 133 666 3.66E-159 T 23-04-2016 THIMO_RS16490 3fe266c2b953e56c5365cb66e8d87bdc 683 PANTHER PTHR21075 5 665 2.2E-226 T 23-04-2016 THIMO_RS16490 3fe266c2b953e56c5365cb66e8d87bdc 683 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 132 667 3.0E-140 T 23-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 SUPERFAMILY SSF50104 3 102 5.01E-29 T 23-04-2016 IPR008991 Translation protein SH3-like domain THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 23-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 97 19.367 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 102 1.5E-22 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 103 1.2E-33 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 Pfam PF00467 KOW motif 7 35 4.1E-5 T 23-04-2016 IPR005824 KOW THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 Gene3D G3DSA:2.30.30.30 3 92 3.2E-19 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 SMART SM00739 3 30 6.6E-4 T 23-04-2016 IPR005824 KOW THIMO_RS13575 d8f02041755b9688319d2bcfd4886eb3 105 PANTHER PTHR12903 3 104 2.1E-38 T 23-04-2016 THIMO_RS00835 7dac696c543011334edc6c00986862af 113 Pfam PF13493 Domain of unknown function (DUF4118) 2 73 6.1E-14 T 23-04-2016 IPR025201 Sensor protein KdpD, transmembrane domain THIMO_RS00835 7dac696c543011334edc6c00986862af 113 Gene3D G3DSA:1.20.120.620 2 70 6.0E-10 T 23-04-2016 THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 PRINTS PR00502 NUDIX hydrolase family signature 44 58 1.4E-5 T 23-04-2016 IPR020476 NUDIX hydrolase THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 PRINTS PR00502 NUDIX hydrolase family signature 58 73 1.4E-5 T 23-04-2016 IPR020476 NUDIX hydrolase THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 Pfam PF00293 NUDIX domain 18 136 6.7E-21 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 PANTHER PTHR22769 7 205 8.8E-53 T 23-04-2016 THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 Gene3D G3DSA:1.10.10.10 146 217 1.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 SUPERFAMILY SSF55811 8 148 1.9E-40 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 Gene3D G3DSA:3.90.79.10 8 140 1.6E-51 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 SUPERFAMILY SSF46785 153 220 1.9E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 PANTHER PTHR22769:SF42 7 205 8.8E-53 T 23-04-2016 THIMO_RS10700 b1cec4274ccc1d1839cbb64ec3e12ffe 230 ProSitePatterns PS00893 Nudix box signature. 49 70 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 THIMO_RS05925 528a04762dbc0caa2be625a53310251e 483 PIRSF PIRSF006247 1 483 4.3E-181 T 23-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 THIMO_RS05925 528a04762dbc0caa2be625a53310251e 483 PANTHER PTHR32024 1 483 6.4E-225 T 23-04-2016 THIMO_RS05925 528a04762dbc0caa2be625a53310251e 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 466 4.2E-113 T 23-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 THIMO_RS05925 528a04762dbc0caa2be625a53310251e 483 PANTHER PTHR32024:SF2 1 483 6.4E-225 T 23-04-2016 THIMO_RS05925 528a04762dbc0caa2be625a53310251e 483 Pfam PF02386 Cation transport protein 40 478 2.5E-86 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:3.40.50.1980 70 211 1.6E-52 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 SUPERFAMILY SSF53807 3 522 1.77E-167 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:3.40.50.1980 346 477 1.4E-55 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 PANTHER PTHR33712:SF7 274 509 2.7E-173 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 PANTHER PTHR33712:SF7 29 256 2.7E-173 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 2 523 4.6E-264 T 23-04-2016 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 PANTHER PTHR33712 274 509 2.7E-173 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 PANTHER PTHR33712 29 256 2.7E-173 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 1.0E-19 T 23-04-2016 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:3.40.50.1980 218 320 1.8E-39 T 23-04-2016 THIMO_RS15425 c7ef67f72ed6e5e8018a56a03209f837 523 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 501 3.9E-119 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 SUPERFAMILY SSF53633 4 241 4.45E-75 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 402 4.3E-133 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Pfam PF01842 ACT domain 267 326 1.9E-10 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 PANTHER PTHR21499 1 406 6.1E-175 T 23-04-2016 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 23-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 SUPERFAMILY SSF55021 248 326 1.4E-17 T 23-04-2016 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 402 1.5E-119 T 23-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Pfam PF13840 ACT domain 337 399 3.8E-14 T 23-04-2016 IPR027795 GATS-like ACT domain THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 PANTHER PTHR21499:SF27 1 406 6.1E-175 T 23-04-2016 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 PIRSF PIRSF000726 58 407 2.8E-142 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Gene3D G3DSA:3.40.1160.10 1 245 7.5E-76 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Pfam PF00696 Amino acid kinase family 3 229 4.5E-52 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 SUPERFAMILY SSF55021 330 404 1.33E-23 T 23-04-2016 THIMO_RS11605 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Gene3D G3DSA:3.30.70.260 262 335 6.8E-5 T 23-04-2016 THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 PANTHER PTHR11614:SF108 8 257 3.4E-91 T 23-04-2016 THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 Gene3D G3DSA:3.40.50.1820 183 254 9.3E-38 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 Gene3D G3DSA:3.40.50.1820 7 139 9.3E-38 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 PANTHER PTHR11614 8 257 3.4E-91 T 23-04-2016 THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 SUPERFAMILY SSF53474 185 254 2.1E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 SUPERFAMILY SSF53474 6 141 2.1E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS12270 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 Pfam PF12146 Serine aminopeptidase, S33 44 136 1.5E-13 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 THIMO_RS00105 8fe584693e3a2f29f137dacc511fe92d 462 SUPERFAMILY SSF88713 245 455 5.72E-10 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 THIMO_RS00105 8fe584693e3a2f29f137dacc511fe92d 462 Gene3D G3DSA:3.20.20.370 246 448 4.4E-7 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 THIMO_RS09885 4f615bc201a70561bf9c1f92d945493c 464 PANTHER PTHR30092 1 464 9.5E-127 T 23-04-2016 THIMO_RS09885 4f615bc201a70561bf9c1f92d945493c 464 PIRSF PIRSF004548 1 464 3.0E-132 T 23-04-2016 IPR010364 Uncharacterised protein family, inner membrane CreD THIMO_RS09885 4f615bc201a70561bf9c1f92d945493c 464 Pfam PF06123 Inner membrane protein CreD 5 457 5.6E-146 T 23-04-2016 IPR010364 Uncharacterised protein family, inner membrane CreD THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 Gene3D G3DSA:1.10.287.480 176 221 9.5E-19 T 23-04-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 Pfam PF01430 Hsp33 protein 5 269 1.3E-84 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 PANTHER PTHR30111 5 284 2.9E-69 T 23-04-2016 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 Gene3D G3DSA:3.90.1280.10 222 277 1.9E-23 T 23-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 PIRSF PIRSF005261 1 280 2.0E-77 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 SUPERFAMILY SSF118352 221 277 6.02E-19 T 23-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 PANTHER PTHR30111:SF1 5 284 2.9E-69 T 23-04-2016 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 Gene3D G3DSA:3.55.30.10 2 172 3.7E-58 T 23-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 SUPERFAMILY SSF64397 5 228 4.58E-68 T 23-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 THIMO_RS04510 0544d47ad5791306c072c03e55b5d4d8 290 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 280 29.751 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 THIMO_RS01410 31a6954f85cc42e6b54b5b49fdd6141c 310 PANTHER PTHR30329 9 290 1.6E-57 T 23-04-2016 THIMO_RS01410 31a6954f85cc42e6b54b5b49fdd6141c 310 Gene3D G3DSA:3.30.1330.60 140 266 2.2E-25 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS01410 31a6954f85cc42e6b54b5b49fdd6141c 310 Pfam PF00691 OmpA family 162 260 1.4E-11 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS01410 31a6954f85cc42e6b54b5b49fdd6141c 310 SUPERFAMILY SSF103088 149 266 6.8E-23 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS01410 31a6954f85cc42e6b54b5b49fdd6141c 310 PANTHER PTHR30329:SF4 9 290 1.6E-57 T 23-04-2016 THIMO_RS01410 31a6954f85cc42e6b54b5b49fdd6141c 310 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 10 53 6.1E-18 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 PANTHER PTHR11804:SF8 2 674 0.0 T 23-04-2016 THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 Gene3D G3DSA:3.40.390.10 355 500 1.6E-59 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 Gene3D G3DSA:1.10.1370.10 137 346 4.7E-137 T 23-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 Gene3D G3DSA:1.10.1370.10 501 674 4.7E-137 T 23-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 Gene3D G3DSA:1.20.1050.40 10 134 3.3E-25 T 23-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 Pfam PF01432 Peptidase family M3 219 673 1.4E-148 T 23-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 SUPERFAMILY SSF55486 1 673 6.28E-200 T 23-04-2016 THIMO_RS06545 ffac2f312ddd27a50f397f29851d5616 676 PANTHER PTHR11804 2 674 0.0 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Pfam PF00270 DEAD/DEAH box helicase 303 441 1.7E-14 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:2.40.50.140 53 141 2.6E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Pfam PF17191 RecG wedge domain 20 176 3.8E-14 T 23-04-2016 IPR033454 RecG, wedge domain THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Pfam PF00271 Helicase conserved C-terminal domain 488 597 7.7E-16 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 PANTHER PTHR24031 635 680 2.5E-114 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 PANTHER PTHR24031 279 292 2.5E-114 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:3.40.50.300 465 647 2.0E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF52540 191 463 3.96E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:1.10.150.20 9 42 3.7E-6 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF52540 300 352 9.78E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF52540 517 659 9.78E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 PANTHER PTHR24031 309 612 2.5E-114 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF50249 15 180 1.61E-34 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:3.40.50.300 267 464 2.7E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 34 673 4.3E-211 T 23-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 SMART SM00490 514 598 1.2E-17 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 SMART SM00487 275 469 5.0E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 PANTHER PTHR24031:SF249 309 612 2.5E-114 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 PANTHER PTHR24031:SF249 279 292 2.5E-114 T 23-04-2016 THIMO_RS04960 818ba004f0cd03e0206081aaa70e1ccf 702 PANTHER PTHR24031:SF249 635 680 2.5E-114 T 23-04-2016 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 Gene3D G3DSA:1.10.560.10 367 518 1.8E-42 T 23-04-2016 IPR027413 GroEL-like equatorial domain THIMO_RS00845 322f97667741274ad4527151fda643f1 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 6.2E-260 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.995 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 Gene3D G3DSA:1.10.560.10 3 188 4.5E-49 T 23-04-2016 IPR027413 GroEL-like equatorial domain THIMO_RS00845 322f97667741274ad4527151fda643f1 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF48592 406 521 5.19E-79 T 23-04-2016 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF48592 7 134 5.19E-79 T 23-04-2016 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 1.1E-97 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 Gene3D G3DSA:3.50.7.10 189 366 2.9E-101 T 23-04-2016 IPR027409 GroEL-like apical domain THIMO_RS00845 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 PANTHER PTHR11353 3 547 1.0E-267 T 23-04-2016 THIMO_RS00845 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF52029 184 376 9.42E-85 T 23-04-2016 IPR027409 GroEL-like apical domain THIMO_RS00845 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF54849 137 203 1.9E-24 T 23-04-2016 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 PIRSF PIRSF006630 1 538 1.3E-190 T 23-04-2016 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|UniPathway: UPA00253 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 Gene3D G3DSA:3.60.110.10 1 237 4.7E-58 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 PANTHER PTHR23090 2 538 4.4E-161 T 23-04-2016 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 Pfam PF00795 Carbon-nitrogen hydrolase 5 233 2.1E-23 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 SUPERFAMILY SSF52402 262 524 4.85E-77 T 23-04-2016 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 Gene3D G3DSA:3.40.50.620 262 523 3.3E-76 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 SUPERFAMILY SSF56317 1 232 1.7E-57 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 TIGRFAM TIGR00552 nadE: NAD+ synthetase 274 517 4.3E-60 T 23-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 THIMO_RS10495 30eae5605ae1e287598935d41d7b1f6b 538 Pfam PF02540 NAD synthase 267 515 8.4E-73 T 23-04-2016 IPR022310 NAD/GMP synthase THIMO_RS11935 70e5af3fe9315cc1a16996f4af67e1cc 237 Pfam PF11736 Protein of unknown function (DUF3299) 87 236 3.6E-45 T 23-04-2016 IPR021727 Protein of unknown function DUF3299 THIMO_RS12460 60945a765f56a1056ca9dcb4e75ba22e 449 Pfam PF01523 Putative modulator of DNA gyrase 35 326 5.5E-55 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS12460 60945a765f56a1056ca9dcb4e75ba22e 449 PANTHER PTHR30624:SF1 8 449 4.6E-164 T 23-04-2016 THIMO_RS12460 60945a765f56a1056ca9dcb4e75ba22e 449 SUPERFAMILY SSF111283 16 449 1.83E-128 T 23-04-2016 THIMO_RS12460 60945a765f56a1056ca9dcb4e75ba22e 449 PANTHER PTHR30624 8 449 4.6E-164 T 23-04-2016 THIMO_RS06950 cd8530104894ad5aba66f02a7137b950 597 SMART SM00729 208 425 8.4E-21 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS06950 cd8530104894ad5aba66f02a7137b950 597 PANTHER PTHR11918 71 398 5.9E-25 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS06950 cd8530104894ad5aba66f02a7137b950 597 Gene3D G3DSA:3.80.30.20 212 407 2.9E-27 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS06950 cd8530104894ad5aba66f02a7137b950 597 SUPERFAMILY SSF102114 210 418 2.09E-29 T 23-04-2016 THIMO_RS06950 cd8530104894ad5aba66f02a7137b950 597 Pfam PF04055 Radical SAM superfamily 214 374 2.2E-11 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS18170 78980692888559e2271c7e1927788e7a 138 Gene3D G3DSA:3.30.460.10 5 68 1.8E-6 T 23-04-2016 THIMO_RS18170 78980692888559e2271c7e1927788e7a 138 SUPERFAMILY SSF81301 5 64 1.37E-5 T 23-04-2016 THIMO_RS18170 78980692888559e2271c7e1927788e7a 138 SUPERFAMILY SSF81593 55 102 1.33E-7 T 23-04-2016 THIMO_RS12115 8eb6abf1e3c9086be1d0198db45aa33d 466 PANTHER PTHR33362:SF6 285 466 1.2E-224 T 23-04-2016 THIMO_RS12115 8eb6abf1e3c9086be1d0198db45aa33d 466 PANTHER PTHR33362:SF6 1 265 1.2E-224 T 23-04-2016 THIMO_RS12115 8eb6abf1e3c9086be1d0198db45aa33d 466 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 451 3.4E-104 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit THIMO_RS12115 8eb6abf1e3c9086be1d0198db45aa33d 466 PANTHER PTHR33362 285 466 1.2E-224 T 23-04-2016 THIMO_RS12115 8eb6abf1e3c9086be1d0198db45aa33d 466 PANTHER PTHR33362 1 265 1.2E-224 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 226 246 - T 23-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 333 354 - T 23-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 SUPERFAMILY SSF54534 296 397 3.73E-30 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 PANTHER PTHR10657:SF16 1 438 6.4E-119 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 SUPERFAMILY SSF109998 40 216 3.73E-44 T 23-04-2016 IPR027304 Trigger factor/SurA domain THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 Gene3D G3DSA:3.10.50.40 184 290 3.9E-32 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 Gene3D G3DSA:3.10.50.40 296 418 4.7E-36 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 SUPERFAMILY SSF54534 187 289 9.81E-29 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 Hamap MF_01183 Chaperone SurA [surA]. 24 440 34.232 T 23-04-2016 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 Pfam PF00639 PPIC-type PPIASE domain 192 285 1.7E-23 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 PANTHER PTHR10657 1 438 6.4E-119 T 23-04-2016 THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 Pfam PF09312 SurA N-terminal domain 39 156 1.2E-39 T 23-04-2016 IPR015391 SurA N-terminal THIMO_RS15540 87668b6c406f77ad51600937b94bc7a3 445 Pfam PF13616 PPIC-type PPIASE domain 297 395 1.2E-25 T 23-04-2016 THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 7 226 1.9E-94 T 23-04-2016 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 Pfam PF00005 ABC transporter 27 175 4.6E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 Gene3D G3DSA:3.40.50.300 6 225 8.5E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 PANTHER PTHR24220 9 226 1.1E-109 T 23-04-2016 THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 SUPERFAMILY SSF52540 7 230 6.21E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 SMART SM00382 36 224 4.0E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00935 6616e446112a8f62a3e67bbcc7e23ca0 233 PANTHER PTHR24220:SF111 9 226 1.1E-109 T 23-04-2016 THIMO_RS02445 f9932445b09900f4c019431a92f298da 196 Gene3D G3DSA:3.40.50.10490 2 186 8.4E-57 T 23-04-2016 THIMO_RS02445 f9932445b09900f4c019431a92f298da 196 SUPERFAMILY SSF53697 3 186 3.03E-51 T 23-04-2016 THIMO_RS02445 f9932445b09900f4c019431a92f298da 196 PANTHER PTHR30390 1 188 1.0E-74 T 23-04-2016 THIMO_RS02445 f9932445b09900f4c019431a92f298da 196 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 186 35.011 T 23-04-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 THIMO_RS02445 f9932445b09900f4c019431a92f298da 196 PANTHER PTHR30390:SF6 1 188 1.0E-74 T 23-04-2016 THIMO_RS02445 f9932445b09900f4c019431a92f298da 196 Pfam PF13580 SIS domain 14 143 6.6E-26 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 THIMO_RS02945 9241e53cd213e064d526f7082b139a94 225 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 9 218 9.1E-74 T 23-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 THIMO_RS02945 9241e53cd213e064d526f7082b139a94 225 PANTHER PTHR30183 5 222 1.3E-65 T 23-04-2016 THIMO_RS02945 9241e53cd213e064d526f7082b139a94 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 220 1.5E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS02945 9241e53cd213e064d526f7082b139a94 225 SUPERFAMILY SSF161098 5 215 1.57E-44 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS02945 9241e53cd213e064d526f7082b139a94 225 Gene3D G3DSA:1.10.3720.10 7 221 3.9E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 3 402 42.38 T 23-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 97 105 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 Gene3D G3DSA:3.90.550.10 323 366 2.7E-73 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 Gene3D G3DSA:3.90.550.10 8 285 2.7E-73 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 Pfam PF00483 Nucleotidyl transferase 8 274 2.2E-61 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 SUPERFAMILY SSF51161 304 391 2.91E-16 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 SUPERFAMILY SSF53448 340 356 3.99E-72 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 SUPERFAMILY SSF53448 4 278 3.99E-72 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 PANTHER PTHR22572:SF10 7 385 1.1E-142 T 23-04-2016 THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 12 31 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16055 0f0c921383e72d78a3ffcc5a1bee8734 419 PANTHER PTHR22572 7 385 1.1E-142 T 23-04-2016 THIMO_RS02700 920e470210d9aaf93fc774b14cf3456c 166 Pfam PF13460 NAD(P)H-binding 10 124 1.1E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02700 920e470210d9aaf93fc774b14cf3456c 166 PANTHER PTHR12126 6 162 9.8E-28 T 23-04-2016 THIMO_RS02700 920e470210d9aaf93fc774b14cf3456c 166 SUPERFAMILY SSF51735 6 165 2.37E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02700 920e470210d9aaf93fc774b14cf3456c 166 Gene3D G3DSA:3.40.50.720 2 161 1.8E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02700 920e470210d9aaf93fc774b14cf3456c 166 PANTHER PTHR12126:SF1 6 162 9.8E-28 T 23-04-2016 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 Pfam PF10150 Ribonuclease E/G family 122 391 3.5E-98 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 Hamap MF_00970 Ribonuclease E [rne]. 1 1086 32.609 T 23-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 PANTHER PTHR30001 1 834 0.0 T 23-04-2016 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 PANTHER PTHR30001:SF1 1 834 0.0 T 23-04-2016 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 5.5E-167 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 Pfam PF00575 S1 RNA binding domain 36 119 6.0E-12 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 Gene3D G3DSA:2.40.50.140 32 126 2.1E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 SMART SM00316 37 120 1.7E-8 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS02505 15c3416978609f6d6762718755af6591 1094 SUPERFAMILY SSF50249 40 126 2.82E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 SMART SM00091 155 222 2.0E-4 T 23-04-2016 IPR000014 PAS domain THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 SMART SM00091 275 341 0.0076 T 23-04-2016 IPR000014 PAS domain THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 SUPERFAMILY SSF46689 401 465 1.57E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 TIGRFAM TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR 23 465 5.4E-156 T 23-04-2016 IPR011785 Transcription regulator PpsR UniPathway: UPA00683 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:3.30.450.20 279 384 1.2E-10 T 23-04-2016 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 280 391 5.9E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:3.30.450.20 149 244 1.9E-8 T 23-04-2016 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:3.30.450.20 25 123 6.4E-4 T 23-04-2016 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 1.1E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 1.1E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 SUPERFAMILY SSF55785 145 242 2.09E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Pfam PF13426 PAS domain 285 384 1.7E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Pfam PF13188 PAS domain 156 208 2.0E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Pfam PF02954 Bacterial regulatory protein, Fis family 426 463 6.1E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:1.10.10.60 399 465 7.6E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS13200 f3ca7b9db1c97a493e71684907555862 474 SUPERFAMILY SSF55785 276 383 1.06E-10 T 23-04-2016 IPR000014 PAS domain THIMO_RS06670 5cab7b25cfbe239ede7815c69ed75095 266 PANTHER PTHR37165:SF1 15 266 7.8E-22 T 23-04-2016 THIMO_RS06670 5cab7b25cfbe239ede7815c69ed75095 266 PANTHER PTHR37165 15 266 7.8E-22 T 23-04-2016 THIMO_RS06670 5cab7b25cfbe239ede7815c69ed75095 266 PIRSF PIRSF019254 1 266 5.5E-71 T 23-04-2016 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS06670 5cab7b25cfbe239ede7815c69ed75095 266 Pfam PF04454 Encapsulating protein for peroxidase 1 251 2.1E-68 T 23-04-2016 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 PANTHER PTHR22748:SF7 1 272 2.7E-117 T 23-04-2016 THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 23-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 PANTHER PTHR22748 1 272 2.7E-117 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 269 3.2E-89 T 23-04-2016 THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 Gene3D G3DSA:3.60.10.10 2 271 1.7E-78 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 SUPERFAMILY SSF56219 2 271 6.41E-82 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 263 4.5E-25 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS16375 07a7475777810b511084acd42bc6e8dd 272 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 2 270 1.3E-78 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 Gene3D G3DSA:3.40.47.10 163 318 1.3E-51 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 SUPERFAMILY SSF53901 5 319 1.2E-71 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 319 71.397 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 318 1.6E-130 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 Gene3D G3DSA:3.40.47.10 6 162 9.2E-66 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 230 319 2.1E-36 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 PANTHER PTHR18919 28 319 5.5E-127 T 23-04-2016 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 185 2.8E-31 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 THIMO_RS11390 5113287664fed0b99d46c0c7f08c31e7 319 PANTHER PTHR18919:SF109 28 319 5.5E-127 T 23-04-2016 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 PANTHER PTHR11712 4 411 2.1E-220 T 23-04-2016 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 3.9E-41 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 246 5.2E-60 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 410 8.6E-198 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 PIRSF PIRSF000447 1 412 6.7E-186 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 Gene3D G3DSA:3.40.47.10 3 260 8.0E-79 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 SMART SM00825 Beta-ketoacyl synthase 6 412 9.7E-19 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 SUPERFAMILY SSF53901 4 252 3.46E-78 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 Gene3D G3DSA:3.40.47.10 263 411 1.9E-67 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 SUPERFAMILY SSF53901 215 411 1.25E-76 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS11370 6689cb4eff95d1b6eeff390d287726ac 412 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site THIMO_RS09015 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 PANTHER PTHR23026 5 195 1.7E-78 T 23-04-2016 THIMO_RS09015 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 Pfam PF00881 Nitroreductase family 17 160 2.1E-15 T 23-04-2016 IPR029479 Nitroreductase THIMO_RS09015 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 SUPERFAMILY SSF55469 10 195 2.36E-41 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS09015 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 PANTHER PTHR23026:SF110 5 195 1.7E-78 T 23-04-2016 THIMO_RS09015 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 Hamap MF_01204 Probable malonic semialdehyde reductase RutE [rutE]. 2 197 44.345 T 23-04-2016 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE GO:0016491|GO:0055114 THIMO_RS09015 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 Gene3D G3DSA:3.40.109.10 4 195 3.1E-40 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 SUPERFAMILY SSF48557 11 462 7.85E-155 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 282 298 3.2E-31 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 154 172 3.2E-31 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 238 265 3.2E-31 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 109 127 3.2E-31 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 Pfam PF00206 Lyase 13 307 1.5E-78 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 ProSitePatterns PS00163 Fumarate lyases signature. 282 291 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 Gene3D G3DSA:1.10.40.30 381 438 1.2E-29 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 282 298 5.7E-70 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 108 130 5.7E-70 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 238 262 5.7E-70 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 200 216 5.7E-70 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 317 336 5.7E-70 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 149 169 5.7E-70 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 Gene3D G3DSA:1.20.200.10 114 380 4.8E-112 T 23-04-2016 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 Pfam PF14698 Argininosuccinate lyase C-terminal 370 438 2.9E-24 T 23-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PANTHER PTHR11444 1 462 6.9E-233 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 Hamap MF_00006 Argininosuccinate lyase [argH]. 9 460 44.227 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 Gene3D G3DSA:1.10.275.10 9 113 2.9E-39 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 TIGRFAM TIGR00838 argH: argininosuccinate lyase 11 462 8.5E-194 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS05095 1dc3e91a4859da09ad0b35fac757e72d 468 PANTHER PTHR11444:SF3 1 462 6.9E-233 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 7.0E-48 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 PANTHER PTHR30308:SF2 1 158 2.8E-73 T 23-04-2016 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 Gene3D G3DSA:2.40.280.10 13 133 2.4E-48 T 23-04-2016 IPR023620 Small protein B THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 Hamap MF_00023 SsrA-binding protein [smpB]. 1 158 70.466 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 8.1E-51 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 Pfam PF01668 SmpB protein 13 76 3.3E-27 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 SUPERFAMILY SSF74982 8 138 2.22E-49 T 23-04-2016 IPR023620 Small protein B THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 PANTHER PTHR30308 1 158 2.8E-73 T 23-04-2016 THIMO_RS02770 9451f54517550c0b7443be37592a2f77 158 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 23-04-2016 IPR020081 SsrA-binding protein, conserved site THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 Pfam PF02321 Outer membrane efflux protein 27 241 9.5E-25 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 Pfam PF02321 Outer membrane efflux protein 265 447 3.7E-37 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 24 463 1.5E-96 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 PANTHER PTHR30026 1 464 1.4E-108 T 23-04-2016 THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 SUPERFAMILY SSF56954 4 450 1.83E-85 T 23-04-2016 THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 PANTHER PTHR30026:SF3 1 464 1.4E-108 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 THIMO_RS05245 1a65cfad0e62b7188d40c922a7a4d05a 473 Gene3D G3DSA:1.20.1600.10 20 450 1.0E-78 T 23-04-2016 THIMO_RS17555 83f4888fa8c69a330e92e93a37575e8e 422 Pfam PF02342 TerD domain 4 181 4.9E-54 T 23-04-2016 IPR003325 TerD domain GO:0006950 THIMO_RS17555 83f4888fa8c69a330e92e93a37575e8e 422 PANTHER PTHR32097 1 420 1.3E-65 T 23-04-2016 THIMO_RS17555 83f4888fa8c69a330e92e93a37575e8e 422 PIRSF PIRSF037118 3 421 1.6E-141 T 23-04-2016 IPR017115 Tellurite resistance, TerA THIMO_RS17555 83f4888fa8c69a330e92e93a37575e8e 422 Gene3D G3DSA:2.60.60.30 22 177 4.7E-42 T 23-04-2016 THIMO_RS03755 de15d77c1b5d409e8d829df3d7a71673 436 Pfam PF14065 Protein of unknown function (DUF4255) 10 212 5.3E-51 T 23-04-2016 IPR025351 Protein of unknown function DUF4255 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 SUPERFAMILY SSF52540 8 274 9.88E-87 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PRINTS PR00315 GTP-binding elongation factor signature 13 26 2.8E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PRINTS PR00315 GTP-binding elongation factor signature 99 110 2.8E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PRINTS PR00315 GTP-binding elongation factor signature 135 144 2.8E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PRINTS PR00315 GTP-binding elongation factor signature 83 93 2.8E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PRINTS PR00315 GTP-binding elongation factor signature 63 71 2.8E-11 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Pfam PF00009 Elongation factor Tu GTP binding domain 11 274 4.3E-48 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 2 525 3.4E-256 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Gene3D G3DSA:2.40.30.10 290 390 8.4E-24 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Pfam PF16658 Class II release factor RF3, C-terminal domain 384 511 4.2E-44 T 23-04-2016 IPR032090 Peptide chain release factor 3, C-terminal THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 SUPERFAMILY SSF50447 258 389 6.19E-30 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 SUPERFAMILY SSF54980 389 465 1.08E-15 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Gene3D G3DSA:3.40.50.300 5 279 4.5E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PANTHER PTHR23115:SF69 248 469 4.5E-240 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PANTHER PTHR23115:SF69 1 182 4.5E-240 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Pfam PF03144 Elongation factor Tu domain 2 311 377 2.0E-8 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PANTHER PTHR23115 248 469 4.5E-240 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 PANTHER PTHR23115 1 182 4.5E-240 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Gene3D G3DSA:3.30.70.870 392 461 1.3E-11 T 23-04-2016 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 151 8.0E-20 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS12335 14500317ac66518f70aa51d146234f31 526 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 524 52.454 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 Gene3D G3DSA:3.40.50.300 2 267 5.4E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 Gene3D G3DSA:3.40.50.300 317 547 1.7E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 SMART SM00382 342 512 2.2E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 SMART SM00382 28 228 8.4E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 SUPERFAMILY SSF52540 310 514 5.58E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 SUPERFAMILY SSF52540 2 94 1.46E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 SUPERFAMILY SSF52540 126 237 1.46E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF00005 ABC transporter 19 183 1.3E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF00005 ABC transporter 338 467 6.5E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 PANTHER PTHR19211 1 568 2.4E-234 T 23-04-2016 THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF16326 ABC transporter C-terminal domain 558 627 7.1E-23 T 23-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF12848 ABC transporter 222 297 1.6E-10 T 23-04-2016 IPR032781 ABC-transporter extension domain THIMO_RS12350 c755c2f44daaee8e0ae1484fb380ca79 636 PANTHER PTHR19211:SF45 1 568 2.4E-234 T 23-04-2016 THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 1 470 1.5E-137 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 1 224 2.0E-29 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 Gene3D G3DSA:3.40.50.880 247 438 1.2E-27 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 PANTHER PTHR21343:SF1 1 477 3.7E-223 T 23-04-2016 THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 Gene3D G3DSA:3.40.50.300 1 231 3.0E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 PANTHER PTHR21343 1 477 3.7E-223 T 23-04-2016 THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 SUPERFAMILY SSF52317 248 439 6.17E-39 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 247 429 1.7E-54 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 SUPERFAMILY SSF52540 1 234 1.74E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16200 266787ae7900f2fb15e4cbde5b34b531 499 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 480 206.621 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 Gene3D G3DSA:3.30.1330.10 26 175 9.0E-63 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 11 339 1.2E-137 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 182 342 5.2E-38 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 SUPERFAMILY SSF55326 11 174 1.12E-51 T 23-04-2016 THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 PANTHER PTHR10520 11 342 2.5E-209 T 23-04-2016 THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 11 348 46.867 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 69 169 1.2E-15 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 Gene3D G3DSA:3.90.650.10 177 345 1.7E-67 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS07800 b38ae09a596daad3d2afef9b9b598a42 356 SUPERFAMILY SSF56042 177 344 4.19E-60 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 SUPERFAMILY SSF55874 306 444 1.26E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 PANTHER PTHR24423 181 446 1.8E-69 T 23-04-2016 THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 439 4.2E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 Gene3D G3DSA:3.30.565.10 306 444 4.6E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 6.2E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 6.2E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 PANTHER PTHR24423:SF496 181 446 1.8E-69 T 23-04-2016 THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 SUPERFAMILY SSF47384 223 298 8.24E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15185 7b263d8f923363817526025c447f93e7 446 SMART SM00387 343 446 1.5E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS07855 03bdd756c5d8a46c265a0ab2734fea15 124 Pfam PF09361 Phasin protein 11 101 8.2E-13 T 23-04-2016 IPR018968 Phasin THIMO_RS10565 ec8d983c4f2b2d59f90ea473786d801b 119 SUPERFAMILY SSF81301 4 84 5.23E-5 T 23-04-2016 THIMO_RS10565 ec8d983c4f2b2d59f90ea473786d801b 119 Gene3D G3DSA:3.30.460.10 24 84 1.3E-5 T 23-04-2016 THIMO_RS01960 abb72a27b7e810592829f945ab6a4405 323 Gene3D G3DSA:3.40.367.20 100 306 7.0E-70 T 23-04-2016 THIMO_RS01960 abb72a27b7e810592829f945ab6a4405 323 PANTHER PTHR30514:SF0 1 322 1.8E-86 T 23-04-2016 THIMO_RS01960 abb72a27b7e810592829f945ab6a4405 323 SUPERFAMILY SSF53067 1 320 1.59E-60 T 23-04-2016 THIMO_RS01960 abb72a27b7e810592829f945ab6a4405 323 Pfam PF02685 Glucokinase 4 321 9.8E-105 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 THIMO_RS01960 abb72a27b7e810592829f945ab6a4405 323 TIGRFAM TIGR00749 glk: glucokinase 4 317 1.4E-82 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 THIMO_RS01960 abb72a27b7e810592829f945ab6a4405 323 PANTHER PTHR30514 1 322 1.8E-86 T 23-04-2016 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 PANTHER PTHR10134:SF8 5 194 4.1E-88 T 23-04-2016 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 Pfam PF00355 Rieske [2Fe-2S] domain 108 175 2.0E-11 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 8 190 1.7E-69 T 23-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 4 39 9.0E-11 T 23-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 1.7E-7 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 1.7E-7 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 118 129 1.7E-7 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 Gene3D G3DSA:2.102.10.10 6 195 3.8E-42 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 PANTHER PTHR10134 5 194 4.1E-88 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 THIMO_RS10940 c444a757e11090d7992ef4403b1b584c 197 SUPERFAMILY SSF50022 30 191 3.83E-41 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS04770 0e389451076fb904d47251845ee462d4 380 PANTHER PTHR12526:SF1 72 368 7.7E-46 T 23-04-2016 THIMO_RS04770 0e389451076fb904d47251845ee462d4 380 Pfam PF00534 Glycosyl transferases group 1 189 337 1.3E-22 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS04770 0e389451076fb904d47251845ee462d4 380 PANTHER PTHR12526 72 368 7.7E-46 T 23-04-2016 THIMO_RS04770 0e389451076fb904d47251845ee462d4 380 Pfam PF13579 Glycosyl transferase 4-like domain 16 174 1.4E-13 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS04770 0e389451076fb904d47251845ee462d4 380 SUPERFAMILY SSF53756 11 368 2.15E-57 T 23-04-2016 THIMO_RS04770 0e389451076fb904d47251845ee462d4 380 Gene3D G3DSA:3.40.50.2000 191 299 3.0E-14 T 23-04-2016 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PIRSF PIRSF005419 5 689 7.1E-236 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 Pfam PF00771 FHIPEP family 23 679 1.3E-262 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 29 42 1.2E-55 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 182 199 1.2E-55 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 133 149 1.2E-55 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 233 247 1.2E-55 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 152 170 1.2E-55 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 66 85 1.2E-55 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PANTHER PTHR30161:SF1 4 689 0.0 T 23-04-2016 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 13 688 2.9E-257 T 23-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 THIMO_RS01365 b0b1a24533618507cd5c932968f4bfc6 689 PANTHER PTHR30161 4 689 0.0 T 23-04-2016 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 PRINTS PR00421 Thioredoxin family signature 24 32 8.0E-10 T 23-04-2016 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 PRINTS PR00421 Thioredoxin family signature 32 41 8.0E-10 T 23-04-2016 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 PRINTS PR00421 Thioredoxin family signature 72 83 8.0E-10 T 23-04-2016 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 5.9E-39 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 PIRSF PIRSF000077 2 108 1.6E-44 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 SUPERFAMILY SSF52833 3 108 4.93E-41 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 PANTHER PTHR10438 5 108 1.7E-40 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 Pfam PF00085 Thioredoxin 5 106 2.4E-34 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 THIMO_RS09970 1ea007deb0de69001a4c6d0488c36ef7 108 Gene3D G3DSA:3.40.30.10 2 107 4.4E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 Gene3D G3DSA:3.30.1220.10 9 95 5.9E-8 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 6 96 1.4E-19 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 SMART SM00833 4 98 3.2E-25 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 SUPERFAMILY SSF90002 6 96 7.85E-13 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 PANTHER PTHR13748:SF4 72 112 1.0E-33 T 23-04-2016 THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 PANTHER PTHR13748:SF4 10 56 1.0E-33 T 23-04-2016 THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 PANTHER PTHR13748 72 112 1.0E-33 T 23-04-2016 THIMO_RS12030 ac31d3cb699fdd7045e0d9ccc3ca0ce4 128 PANTHER PTHR13748 10 56 1.0E-33 T 23-04-2016 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:3.40.1380.20 327 471 4.6E-41 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:2.40.33.10 74 169 9.7E-28 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 269 293 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 244 268 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 217 243 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 294 312 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 60 76 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 187 201 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 313 329 9.5E-57 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Pfam PF00224 Pyruvate kinase, barrel domain 3 338 7.8E-115 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Pfam PF02887 Pyruvate kinase, alpha/beta domain 357 471 7.5E-33 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF50800 71 166 1.34E-23 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:3.20.20.60 170 326 1.9E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:3.20.20.60 3 73 1.9E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PANTHER PTHR11817 1 475 2.2E-241 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF52935 324 474 6.8E-39 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PANTHER PTHR11817:SF17 1 475 2.2E-241 T 23-04-2016 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF51621 168 339 2.27E-89 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF51621 2 76 2.27E-89 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS10415 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 473 2.8E-156 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 102 110 1.7E-36 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.7E-36 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 122 134 1.7E-36 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 77 88 1.7E-36 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 172 185 1.7E-36 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.7E-36 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 Pfam PF00117 Glutamine amidotransferase class-I 4 193 2.4E-54 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PANTHER PTHR11922:SF7 1 194 1.2E-89 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 2.6E-13 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 172 185 2.6E-13 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 2.6E-13 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 SUPERFAMILY SSF52317 1 194 7.17E-54 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 Gene3D G3DSA:3.40.50.880 2 194 2.9E-64 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 194 6.1E-80 T 23-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 77 93 1.1E-5 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.1E-5 T 23-04-2016 THIMO_RS05620 4397024facdbe676f5c291cc7daa8542 196 PANTHER PTHR11922 1 194 1.2E-89 T 23-04-2016 THIMO_RS00995 d74c8372cecdcdd51bce02dcc98d129a 558 PANTHER PTHR40940 19 502 5.3E-28 T 23-04-2016 THIMO_RS00995 d74c8372cecdcdd51bce02dcc98d129a 558 PANTHER PTHR40940:SF1 19 502 5.3E-28 T 23-04-2016 THIMO_RS00995 d74c8372cecdcdd51bce02dcc98d129a 558 Pfam PF13584 Oxygen tolerance 41 486 1.1E-61 T 23-04-2016 IPR025738 Aerotolerance-related protein BatD THIMO_RS14735 4ed23205bf4347b58c1c530e0494b2f2 315 Pfam PF04381 Putative exonuclease, RdgC 2 298 6.9E-105 T 23-04-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 THIMO_RS14735 4ed23205bf4347b58c1c530e0494b2f2 315 PANTHER PTHR38103 1 305 5.3E-95 T 23-04-2016 THIMO_RS14735 4ed23205bf4347b58c1c530e0494b2f2 315 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 302 34.811 T 23-04-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 THIMO_RS14735 4ed23205bf4347b58c1c530e0494b2f2 315 PANTHER PTHR38103:SF1 1 305 5.3E-95 T 23-04-2016 THIMO_RS02320 46546d6a6b73c177ea59b39354e782c9 310 PANTHER PTHR11040 19 26 5.2E-60 T 23-04-2016 THIMO_RS02320 46546d6a6b73c177ea59b39354e782c9 310 PANTHER PTHR11040 50 310 5.2E-60 T 23-04-2016 THIMO_RS02320 46546d6a6b73c177ea59b39354e782c9 310 PANTHER PTHR11040:SF33 19 26 5.2E-60 T 23-04-2016 THIMO_RS02320 46546d6a6b73c177ea59b39354e782c9 310 PANTHER PTHR11040:SF33 50 310 5.2E-60 T 23-04-2016 THIMO_RS02320 46546d6a6b73c177ea59b39354e782c9 310 Pfam PF02535 ZIP Zinc transporter 150 305 1.1E-24 T 23-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 Pfam PF00043 Glutathione S-transferase, C-terminal domain 99 180 1.1E-7 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 PANTHER PTHR11260 1 196 6.5E-100 T 23-04-2016 THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 Gene3D G3DSA:1.20.1050.10 91 195 6.6E-17 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 ProSitePatterns PS00195 Glutaredoxin active site. 3 19 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 77 1.2E-20 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 Gene3D G3DSA:3.40.30.10 1 90 6.8E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 PANTHER PTHR11260:SF44 1 196 6.5E-100 T 23-04-2016 THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 SUPERFAMILY SSF52833 1 100 3.05E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07885 15a7b467f42a0e9571130d0e06f841e2 198 SUPERFAMILY SSF47616 72 195 2.98E-27 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 342 532 4.1E-57 T 23-04-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 35 46 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 SUPERFAMILY SSF50715 342 551 1.26E-69 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:1.10.1160.10 265 340 1.1E-38 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 SUPERFAMILY SSF52374 29 348 1.41E-97 T 23-04-2016 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PANTHER PTHR11451 269 556 6.6E-229 T 23-04-2016 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PANTHER PTHR11451 6 249 6.6E-229 T 23-04-2016 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 30 554 2.1E-232 T 23-04-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 552 52.987 T 23-04-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:3.40.50.620 29 97 9.4E-41 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:3.40.50.620 214 264 9.4E-41 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 29 339 2.5E-110 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:2.40.240.10 350 463 2.7E-43 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 212 222 4.9E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 61 74 4.9E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 44 4.9E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 46 57 4.9E-10 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:2.40.240.10 464 550 1.6E-32 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:3.90.800.10 102 211 8.0E-42 T 23-04-2016 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PANTHER PTHR11451:SF29 269 556 6.6E-229 T 23-04-2016 THIMO_RS09960 7df301b86d6ab7088d94205ccdbd7490 561 PANTHER PTHR11451:SF29 6 249 6.6E-229 T 23-04-2016 THIMO_RS01710 00006a4c6e8e122ee03660943c590724 442 Pfam PF03109 ABC1 family 119 234 7.1E-30 T 23-04-2016 IPR004147 UbiB domain THIMO_RS01710 00006a4c6e8e122ee03660943c590724 442 PANTHER PTHR10566:SF65 12 441 3.6E-124 T 23-04-2016 THIMO_RS01710 00006a4c6e8e122ee03660943c590724 442 PANTHER PTHR10566 12 441 3.6E-124 T 23-04-2016 THIMO_RS01710 00006a4c6e8e122ee03660943c590724 442 SUPERFAMILY SSF56112 102 164 5.36E-18 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS01710 00006a4c6e8e122ee03660943c590724 442 SUPERFAMILY SSF56112 199 314 5.36E-18 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 Pfam PF03572 Peptidase family S41 200 365 5.0E-56 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 SUPERFAMILY SSF52096 193 367 2.82E-81 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 SUPERFAMILY SSF52096 37 120 2.82E-81 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 SMART SM00228 102 173 2.9E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 PANTHER PTHR32060 57 365 3.8E-117 T 23-04-2016 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 SUPERFAMILY SSF50156 92 175 3.06E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 Pfam PF13180 PDZ domain 102 175 2.1E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 SMART SM00245 174 366 8.0E-69 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:3.30.750.44 52 107 8.6E-10 T 23-04-2016 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:2.30.42.10 108 183 1.7E-29 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 54 371 2.2E-104 T 23-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:3.90.226.10 184 368 1.1E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS17430 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:3.90.226.10 404 425 1.1E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 SUPERFAMILY SSF51735 4 176 3.71E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 23-04-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 469 5.2E-216 T 23-04-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 468 1.1E-119 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 SMART SM01350 179 469 5.8E-194 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 Gene3D G3DSA:1.10.1040.10 181 433 1.3E-106 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 3.2E-83 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 3.2E-83 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 3.2E-83 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 120 145 3.2E-83 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 3.2E-83 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 67 96 3.2E-83 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 173 1.3E-49 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PIRSF PIRSF000109 1 471 2.5E-215 T 23-04-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 Gene3D G3DSA:1.20.5.320 435 469 4.8E-19 T 23-04-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PANTHER PTHR11811:SF25 1 470 1.5E-267 T 23-04-2016 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 PANTHER PTHR11811 1 470 1.5E-267 T 23-04-2016 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 SUPERFAMILY SSF48179 177 469 1.99E-119 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS09455 d3d9452d099fcd9bd5bbd813461f237c 471 Gene3D G3DSA:3.40.50.720 1 180 4.0E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 Pfam PF00210 Ferritin-like domain 9 145 6.7E-38 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PIRSF PIRSF002560 1 158 1.3E-64 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PANTHER PTHR30295:SF9 1 161 1.6E-85 T 23-04-2016 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 SUPERFAMILY SSF47240 1 156 2.78E-47 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 7.5E-53 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 23 43 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 129 150 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 44 64 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 107 127 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 86 106 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 3 22 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 65 85 5.1E-51 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 Gene3D G3DSA:1.20.1260.10 1 156 1.0E-57 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09805 8a7e54577b9ff2cd93919efde5fe2752 161 PANTHER PTHR30295 1 161 1.6E-85 T 23-04-2016 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 3.8E-39 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Gene3D G3DSA:1.10.3120.10 210 387 1.4E-51 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 SUPERFAMILY SSF109998 248 426 6.93E-42 T 23-04-2016 IPR027304 Trigger factor/SurA domain THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 SUPERFAMILY SSF102735 1 131 4.19E-35 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Hamap MF_00303 Trigger factor [tig]. 1 416 20.655 T 23-04-2016 IPR005215 Trigger factor GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 SUPERFAMILY SSF54534 92 242 5.5E-30 T 23-04-2016 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Gene3D G3DSA:3.30.70.1050 1 117 1.3E-34 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 PANTHER PTHR30560 1 428 8.8E-109 T 23-04-2016 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 TIGRFAM TIGR00115 tig: trigger factor 11 410 3.9E-129 T 23-04-2016 IPR005215 Trigger factor GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 PIRSF PIRSF003095 1 432 1.1E-120 T 23-04-2016 IPR005215 Trigger factor GO:0015031 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Gene3D G3DSA:3.10.50.40 157 209 2.6E-9 T 23-04-2016 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 229 2.4E-11 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 THIMO_RS02025 a9994d73ffc65990ab47919fe22658af 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 410 4.0E-33 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 Pfam PF00271 Helicase conserved C-terminal domain 243 351 1.4E-28 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 SUPERFAMILY SSF52540 84 362 9.0E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 SMART SM00490 270 351 3.6E-31 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 53.388 T 23-04-2016 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 Gene3D G3DSA:3.40.50.300 9 223 2.5E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 SMART SM00487 28 234 8.0E-56 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 PANTHER PTHR24031 1 399 6.6E-216 T 23-04-2016 THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 PANTHER PTHR24031:SF173 1 399 6.6E-216 T 23-04-2016 THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 Gene3D G3DSA:3.40.50.300 224 381 6.9E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09975 71f51037a0cfe42ae530a05469b22ae8 404 Pfam PF00270 DEAD/DEAH box helicase 33 206 1.7E-45 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 PANTHER PTHR10285:SF72 1 294 3.3E-111 T 23-04-2016 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 ProSitePatterns PS00567 Phosphoribulokinase signature. 170 183 - T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 PANTHER PTHR10285 1 294 3.3E-111 T 23-04-2016 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 SUPERFAMILY SSF52540 3 294 2.71E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 Gene3D G3DSA:3.40.50.300 1 295 1.5E-130 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 132 150 1.7E-35 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 170 187 1.7E-35 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 12 29 1.7E-35 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 188 211 1.7E-35 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 THIMO_RS03190 e646d18a05cf6104c689d773aa2ebc13 296 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 220 9.1E-72 T 23-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 THIMO_RS04855 dad88867757f36df464ea32555a64341 136 Gene3D G3DSA:3.30.360.10 1 135 2.0E-16 T 23-04-2016 THIMO_RS04855 dad88867757f36df464ea32555a64341 136 SUPERFAMILY SSF55347 1 111 1.21E-7 T 23-04-2016 THIMO_RS16835 0943ed0b0bc47b190c2107c67e8c961b 290 PIRSF PIRSF006593 1 281 1.1E-81 T 23-04-2016 IPR014444 Uncharacterised conserved protein UCP006593 THIMO_RS16835 0943ed0b0bc47b190c2107c67e8c961b 290 SUPERFAMILY SSF111321 1 278 1.57E-76 T 23-04-2016 IPR002791 Domain of unknown function DUF89 THIMO_RS16835 0943ed0b0bc47b190c2107c67e8c961b 290 Pfam PF01937 Protein of unknown function DUF89 6 269 2.9E-48 T 23-04-2016 IPR002791 Domain of unknown function DUF89 THIMO_RS00140 5fc9b1f93300d334373dd43aa0cfc64f 82 SUPERFAMILY SSF89447 1 43 2.79E-10 T 23-04-2016 THIMO_RS00140 5fc9b1f93300d334373dd43aa0cfc64f 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 7 46 2.2E-6 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 THIMO_RS00140 5fc9b1f93300d334373dd43aa0cfc64f 82 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 4 45 3.8E-15 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 THIMO_RS00140 5fc9b1f93300d334373dd43aa0cfc64f 82 Gene3D G3DSA:2.10.260.10 3 46 2.4E-10 T 23-04-2016 THIMO_RS00140 5fc9b1f93300d334373dd43aa0cfc64f 82 SMART SM00966 4 50 8.9E-10 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 THIMO_RS02000 db3ade5aadc3b527cba801ef5aeda028 154 PANTHER PTHR33221:SF1 2 152 6.7E-60 T 23-04-2016 THIMO_RS02000 db3ade5aadc3b527cba801ef5aeda028 154 Pfam PF02082 Transcriptional regulator 1 83 4.8E-26 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type THIMO_RS02000 db3ade5aadc3b527cba801ef5aeda028 154 PANTHER PTHR33221 2 152 6.7E-60 T 23-04-2016 THIMO_RS02000 db3ade5aadc3b527cba801ef5aeda028 154 Gene3D G3DSA:1.10.10.10 1 131 3.5E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02000 db3ade5aadc3b527cba801ef5aeda028 154 SUPERFAMILY SSF46785 2 132 6.19E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02000 db3ade5aadc3b527cba801ef5aeda028 154 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 9.3E-42 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 225 464 3.0E-64 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:3.30.465.10 104 225 4.9E-39 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:3.30.43.10 11 103 6.0E-21 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 SUPERFAMILY SSF55103 228 468 6.05E-69 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 SUPERFAMILY SSF56176 14 225 1.54E-65 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 Pfam PF01565 FAD binding domain 49 187 3.2E-33 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 PANTHER PTHR11748:SF85 38 468 8.3E-145 T 23-04-2016 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:1.10.45.10 426 465 2.5E-15 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 THIMO_RS07005 256a4d15b9e2b14f5ab854b471de6111 472 PANTHER PTHR11748 38 468 8.3E-145 T 23-04-2016 THIMO_RS08665 20f726bfad62808cdbd07c8e9c931415 144 PANTHER PTHR11717 5 137 8.2E-36 T 23-04-2016 THIMO_RS08665 20f726bfad62808cdbd07c8e9c931415 144 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 128 3.4E-22 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily THIMO_RS08665 20f726bfad62808cdbd07c8e9c931415 144 SMART SM00226 6 134 1.5E-32 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily THIMO_RS08665 20f726bfad62808cdbd07c8e9c931415 144 Gene3D G3DSA:3.40.50.270 5 128 5.1E-39 T 23-04-2016 THIMO_RS08665 20f726bfad62808cdbd07c8e9c931415 144 SUPERFAMILY SSF52788 5 128 6.67E-37 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily THIMO_RS08665 20f726bfad62808cdbd07c8e9c931415 144 PANTHER PTHR11717:SF18 5 137 8.2E-36 T 23-04-2016 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 204 217 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 SUPERFAMILY SSF51569 6 292 4.03E-69 T 23-04-2016 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 SUPERFAMILY SSF110921 396 505 4.18E-11 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 Pfam PF00682 HMGL-like 8 275 3.8E-53 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 Gene3D G3DSA:3.20.20.70 6 347 5.6E-89 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 PANTHER PTHR10277:SF9 3 514 3.3E-113 T 23-04-2016 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 SMART SM00917 370 506 5.4E-6 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 505 1.1E-18 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 15 31 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS06210 08cdae32e6f74a84ff9bc0087803b541 522 PANTHER PTHR10277 3 514 3.3E-113 T 23-04-2016 THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 SUPERFAMILY SSF52467 1 236 1.6E-77 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 5 238 54.502 T 23-04-2016 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Gene3D G3DSA:3.40.50.1220 1 22 1.9E-41 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Gene3D G3DSA:3.40.50.1220 73 114 1.9E-41 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Gene3D G3DSA:3.40.50.1220 164 236 1.9E-41 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Gene3D G3DSA:3.30.1600.10 23 61 3.6E-26 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Gene3D G3DSA:3.30.1600.10 115 157 3.6E-26 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 PANTHER PTHR11085 1 236 3.7E-86 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 THIMO_RS06600 a627ba67f1e71803958550ecf7c938cc 239 Pfam PF02146 Sir2 family 12 188 1.1E-46 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 THIMO_RS05580 ef661ca0e7b253cd547e10103f78545a 156 Gene3D G3DSA:1.20.5.620 64 122 9.5E-20 T 23-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain THIMO_RS05580 ef661ca0e7b253cd547e10103f78545a 156 PANTHER PTHR33445 1 156 2.2E-44 T 23-04-2016 THIMO_RS05580 ef661ca0e7b253cd547e10103f78545a 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 1.7E-31 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 THIMO_RS05580 ef661ca0e7b253cd547e10103f78545a 156 SUPERFAMILY SSF81573 64 121 2.35E-13 T 23-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain THIMO_RS05580 ef661ca0e7b253cd547e10103f78545a 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 12.597 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 THIMO_RS05580 ef661ca0e7b253cd547e10103f78545a 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 3.2E-45 T 23-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 Pfam PF13413 Helix-turn-helix domain 23 84 1.4E-22 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 PANTHER PTHR34475 7 319 5.4E-36 T 23-04-2016 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 Gene3D G3DSA:1.10.260.40 15 88 8.6E-8 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 PANTHER PTHR34475:SF1 7 319 5.4E-36 T 23-04-2016 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 Pfam PF13464 Domain of unknown function (DUF4115) 240 313 2.5E-20 T 23-04-2016 IPR025194 Domain of unknown function DUF4115 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 SMART SM00530 23 84 5.4E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS09045 7cd57ff2342e8fa35afb7688b944bfc9 319 SUPERFAMILY SSF47413 18 82 7.41E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS12165 7c2739548976783ebd72a17ad248f342 142 PANTHER PTHR33202 4 138 2.0E-44 T 23-04-2016 THIMO_RS12165 7c2739548976783ebd72a17ad248f342 142 SUPERFAMILY SSF46785 4 132 9.3E-44 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12165 7c2739548976783ebd72a17ad248f342 142 Gene3D G3DSA:1.10.10.10 4 81 2.1E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12165 7c2739548976783ebd72a17ad248f342 142 Pfam PF01475 Ferric uptake regulator family 9 128 9.6E-45 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 84 100 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 SUPERFAMILY SSF48576 9 277 1.76E-81 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 Gene3D G3DSA:1.10.600.10 6 297 4.8E-89 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 216 228 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 Pfam PF00348 Polyprenyl synthetase 34 269 1.6E-53 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 PANTHER PTHR12001:SF23 6 293 9.9E-100 T 23-04-2016 THIMO_RS08515 a91c15d6302569147c4e53952c5bec7c 298 PANTHER PTHR12001 6 293 9.9E-100 T 23-04-2016 IPR017446 Polyprenyl synthetase-related THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 2.7E-60 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 PANTHER PTHR12220 1 137 1.5E-73 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.0E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.0E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.0E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.0E-40 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 Gene3D G3DSA:3.90.1170.10 23 134 1.1E-51 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 SUPERFAMILY SSF54686 1 134 9.29E-55 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.695 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 5.0E-48 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13595 eafc4c6a93b69ca7663dd295dd1171ed 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03345 e30e18e5d1f3d3d1a2c0461a6e87aded 249 Gene3D G3DSA:3.60.20.10 2 204 9.7E-12 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS03345 e30e18e5d1f3d3d1a2c0461a6e87aded 249 PIRSF PIRSF009120 1 248 4.1E-86 T 23-04-2016 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 THIMO_RS03345 e30e18e5d1f3d3d1a2c0461a6e87aded 249 SUPERFAMILY SSF56235 2 243 7.53E-29 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 SUPERFAMILY SSF53720 6 478 8.77E-145 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 Gene3D G3DSA:3.40.605.10 6 265 2.2E-77 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 Pfam PF00171 Aldehyde dehydrogenase family 16 472 5.3E-145 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 PANTHER PTHR11699 6 483 6.8E-226 T 23-04-2016 THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 Gene3D G3DSA:3.40.309.10 266 448 9.7E-63 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 THIMO_RS12385 eb3b77419141ee3a53306031d93c92d9 483 PANTHER PTHR11699:SF155 6 483 6.8E-226 T 23-04-2016 THIMO_RS14760 9632f3525879aee5a36f4c6286c5ee03 263 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 19 240 22.11 T 23-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 THIMO_RS14760 9632f3525879aee5a36f4c6286c5ee03 263 Pfam PF03799 Cell division protein FtsQ 121 232 5.8E-21 T 23-04-2016 IPR005548 Cell division protein FtsQ/DivIB THIMO_RS14760 9632f3525879aee5a36f4c6286c5ee03 263 PANTHER PTHR35851:SF1 13 257 6.5E-46 T 23-04-2016 THIMO_RS14760 9632f3525879aee5a36f4c6286c5ee03 263 PANTHER PTHR35851 13 257 6.5E-46 T 23-04-2016 THIMO_RS14760 9632f3525879aee5a36f4c6286c5ee03 263 Pfam PF08478 POTRA domain, FtsQ-type 49 117 3.7E-13 T 23-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 PANTHER PTHR11587:SF3 3 223 2.6E-104 T 23-04-2016 THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 211 2.2E-60 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 Gene3D G3DSA:3.40.50.620 3 225 4.3E-78 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 PIRSF PIRSF006293 1 228 3.9E-75 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 Pfam PF06508 Queuosine biosynthesis protein QueC 3 218 3.0E-74 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 SUPERFAMILY SSF52402 3 225 9.92E-63 T 23-04-2016 THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 224 54.676 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 THIMO_RS14135 3d4f586fcfbd093fd90097e4d630a4cd 231 PANTHER PTHR11587 3 223 2.6E-104 T 23-04-2016 THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 Gene3D G3DSA:3.40.50.20 241 289 3.2E-5 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 Gene3D G3DSA:3.30.1490.20 290 365 9.3E-13 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 PANTHER PTHR11609 163 488 7.9E-115 T 23-04-2016 THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 SUPERFAMILY SSF56059 277 479 4.77E-39 T 23-04-2016 THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 Pfam PF02655 ATP-grasp domain 284 454 2.3E-5 T 23-04-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 PANTHER PTHR11609:SF4 163 488 7.9E-115 T 23-04-2016 THIMO_RS13295 9e87d7e2595a2c7c33a22052af413c4d 496 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 26 176 2.5E-49 T 23-04-2016 IPR025839 RimK-like ATPgrasp N-terminal domain THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF81886 916 928 3.92E-81 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF81886 649 869 3.92E-81 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF07517 SecA DEAD-like domain 7 433 2.8E-128 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 ProSitePatterns PS01312 SecA family signature. 531 546 - T 23-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 370 392 4.7E-58 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 407 424 4.7E-58 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 444 457 4.7E-58 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 63 87 4.7E-58 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 101 115 4.7E-58 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 117 127 4.7E-58 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SMART SM00957 6 433 4.5E-296 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 861 19.984 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.40.50.300 3 256 4.7E-121 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.40.50.300 400 447 4.7E-121 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PANTHER PTHR30612 8 159 0.0 T 23-04-2016 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PANTHER PTHR30612 188 551 0.0 T 23-04-2016 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 PANTHER PTHR30612 579 940 0.0 T 23-04-2016 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 191 845 6.4E-270 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SMART SM00958 256 389 4.0E-78 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF52540 447 647 1.73E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF52540 5 172 1.82E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF52540 199 256 1.82E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF52540 399 446 1.82E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.90.1440.10 259 399 1.8E-44 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF81767 259 399 1.96E-42 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF01043 SecA preprotein cross-linking domain 260 389 9.4E-38 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF07516 SecA Wing and Scaffold domain 646 858 9.1E-67 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:1.10.3060.10 677 859 2.8E-56 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF02810 SEC-C motif 920 938 4.3E-10 T 23-04-2016 IPR004027 SEC-C motif THIMO_RS17410 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.40.50.300 448 648 4.7E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14655 48fae2a1de5007b752f1953e7b46a1d8 300 SUPERFAMILY SSF53955 61 194 5.0E-34 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS14655 48fae2a1de5007b752f1953e7b46a1d8 300 Pfam PF01464 Transglycosylase SLT domain 73 180 6.1E-26 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS14655 48fae2a1de5007b752f1953e7b46a1d8 300 Gene3D G3DSA:1.10.530.10 68 194 9.7E-37 T 23-04-2016 THIMO_RS14655 48fae2a1de5007b752f1953e7b46a1d8 300 PANTHER PTHR21666 54 192 8.3E-28 T 23-04-2016 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 1384 1510 2.5E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 1581 1635 2.5E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 PANTHER PTHR13710:SF81 1752 1759 6.5E-111 T 23-04-2016 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 PANTHER PTHR13710:SF81 326 695 6.5E-111 T 23-04-2016 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SMART SM00490 595 676 4.9E-24 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 537 700 1.0E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 1165 1383 3.8E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF00271 Helicase conserved C-terminal domain 584 674 1.8E-13 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 325 531 3.6E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SUPERFAMILY SSF52540 357 688 2.54E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SUPERFAMILY SSF53098 83 181 3.92E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF00580 UvrD/REP helicase N-terminal domain 1271 1371 4.7E-18 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF00580 UvrD/REP helicase N-terminal domain 1165 1258 1.9E-16 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 PANTHER PTHR13710 1752 1759 6.5E-111 T 23-04-2016 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 PANTHER PTHR13710 326 695 6.5E-111 T 23-04-2016 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.30.420.10 61 147 6.8E-6 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SMART SM00487 1159 1381 0.065 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SMART SM00487 331 551 1.5E-20 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF00270 DEAD/DEAH box helicase 347 518 5.0E-20 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SUPERFAMILY SSF52540 1165 1636 1.84E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF13361 UvrD-like helicase C-terminal domain 1571 1634 5.1E-13 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 THIMO_RS01615 94444f6b5b7a3dc4eed7aae2af0c652a 1792 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 326 694 4.5E-82 T 23-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 THIMO_RS07905 7fe05f45e3dd845d95ebf4c5de4d6804 251 PANTHER PTHR37468 1 244 1.6E-70 T 23-04-2016 THIMO_RS07905 7fe05f45e3dd845d95ebf4c5de4d6804 251 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 11 227 4.1E-38 T 23-04-2016 THIMO_RS07905 7fe05f45e3dd845d95ebf4c5de4d6804 251 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 5 245 24.803 T 23-04-2016 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 4.7E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 Gene3D G3DSA:1.10.10.10 7 90 3.4E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 Pfam PF03466 LysR substrate binding domain 90 295 1.9E-33 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 PANTHER PTHR30126 4 295 1.2E-136 T 23-04-2016 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 PANTHER PTHR30126:SF25 4 295 1.2E-136 T 23-04-2016 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 Gene3D G3DSA:3.40.190.10 91 183 8.5E-17 T 23-04-2016 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 SUPERFAMILY SSF53850 90 298 1.9E-38 T 23-04-2016 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 Gene3D G3DSA:3.40.190.10 184 262 4.4E-16 T 23-04-2016 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.1E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.1E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.1E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS06955 2f97b640288fb7648bf806b9ca4791e0 303 SUPERFAMILY SSF46785 6 113 2.65E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14045 71e4ef01f83592f9f934aa87ec1d861d 106 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 9 70 2.0E-19 T 23-04-2016 THIMO_RS14045 71e4ef01f83592f9f934aa87ec1d861d 106 SMART SM00877 8 85 8.5E-31 T 23-04-2016 IPR000249 Microcompartment protein, bacteria THIMO_RS14045 71e4ef01f83592f9f934aa87ec1d861d 106 Pfam PF00936 BMC domain 9 85 9.3E-26 T 23-04-2016 IPR000249 Microcompartment protein, bacteria THIMO_RS14045 71e4ef01f83592f9f934aa87ec1d861d 106 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 26 45 - T 23-04-2016 IPR020808 Bacterial microcompartments protein, conserved site THIMO_RS14045 71e4ef01f83592f9f934aa87ec1d861d 106 PANTHER PTHR33941 9 93 1.2E-31 T 23-04-2016 THIMO_RS14045 71e4ef01f83592f9f934aa87ec1d861d 106 SUPERFAMILY SSF143414 9 94 3.53E-28 T 23-04-2016 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 Gene3D G3DSA:3.40.50.720 1 143 1.3E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 355 1.8E-53 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 PIRSF PIRSF000148 1 372 1.2E-61 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 SUPERFAMILY SSF55347 135 356 5.89E-74 T 23-04-2016 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 SUPERFAMILY SSF51735 1 148 2.24E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 SMART SM00859 3 123 3.3E-27 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 PANTHER PTHR10174 202 370 3.4E-139 T 23-04-2016 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 PANTHER PTHR10174 104 180 3.4E-139 T 23-04-2016 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 122 3.1E-19 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 PANTHER PTHR10174:SF116 202 370 3.4E-139 T 23-04-2016 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 PANTHER PTHR10174:SF116 104 180 3.4E-139 T 23-04-2016 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 263 277 - T 23-04-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 369 32.715 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 3 369 2.0E-178 T 23-04-2016 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS12685 fb3fe75ae8122eb9e121bb8a99103130 373 Gene3D G3DSA:3.30.360.10 144 352 1.9E-72 T 23-04-2016 THIMO_RS15170 b1ee62db074026bb5a9d58cca98db050 115 SUPERFAMILY SSF117782 1 104 6.41E-33 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS15170 b1ee62db074026bb5a9d58cca98db050 115 PANTHER PTHR34068:SF3 1 106 6.9E-42 T 23-04-2016 THIMO_RS15170 b1ee62db074026bb5a9d58cca98db050 115 Pfam PF01906 Putative heavy-metal-binding 1 102 7.9E-35 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS15170 b1ee62db074026bb5a9d58cca98db050 115 PANTHER PTHR34068 1 106 6.9E-42 T 23-04-2016 THIMO_RS15170 b1ee62db074026bb5a9d58cca98db050 115 Gene3D G3DSA:3.30.110.70 1 103 3.6E-34 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS15170 b1ee62db074026bb5a9d58cca98db050 115 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 22.783 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS14950 fd821b76a36ca2cd6b485a37b1a957f1 96 Pfam PF01381 Helix-turn-helix 37 90 1.5E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS14950 fd821b76a36ca2cd6b485a37b1a957f1 96 SUPERFAMILY SSF47413 27 92 7.04E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS14950 fd821b76a36ca2cd6b485a37b1a957f1 96 Gene3D G3DSA:1.10.260.40 30 90 1.1E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS14950 fd821b76a36ca2cd6b485a37b1a957f1 96 SMART SM00530 34 93 2.6E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS04325 0a12a189ba79c5a79b826588872f7f83 722 Gene3D G3DSA:3.40.50.300 374 551 1.7E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04325 0a12a189ba79c5a79b826588872f7f83 722 Pfam PF07728 AAA domain (dynein-related subfamily) 408 505 2.6E-6 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 THIMO_RS04325 0a12a189ba79c5a79b826588872f7f83 722 SUPERFAMILY SSF52540 371 550 7.48E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 2 117 19.657 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 5 112 1.0E-26 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 PANTHER PTHR33515 1 119 3.3E-34 T 23-04-2016 THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 Pfam PF02033 Ribosome-binding factor A 6 110 1.8E-27 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 Gene3D G3DSA:3.30.300.20 3 116 2.1E-35 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 ProSitePatterns PS01319 Ribosome-binding factor A signature. 76 97 - T 23-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 97 1.0E-15 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 THIMO_RS03370 3abb09834a6be4e4fc537bdcbbabb5c9 123 SUPERFAMILY SSF89919 2 112 4.58E-29 T 23-04-2016 IPR023799 Ribosome-binding factor A domain THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 12 205 1.5E-57 T 23-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 PANTHER PTHR30108 9 65 1.8E-74 T 23-04-2016 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 PANTHER PTHR30108 82 211 1.8E-74 T 23-04-2016 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 Gene3D G3DSA:3.40.50.1950 11 209 3.8E-69 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 PANTHER PTHR30108:SF2 9 65 1.8E-74 T 23-04-2016 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 PANTHER PTHR30108:SF2 82 211 1.8E-74 T 23-04-2016 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 Pfam PF02441 Flavoprotein 12 150 8.1E-23 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 SUPERFAMILY SSF52507 10 207 1.22E-52 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 THIMO_RS00295 ac86c8b17a3016f049d29dd551ae6c0f 214 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 10 207 34.293 T 23-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 178 7.2E-48 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 553 5.4E-41 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 7 576 4.1E-177 T 23-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 Gene3D G3DSA:3.40.50.970 6 184 5.4E-63 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 PANTHER PTHR18968 7 577 5.5E-222 T 23-04-2016 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 SUPERFAMILY SSF52518 364 575 1.0E-60 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 Gene3D G3DSA:3.40.50.970 348 568 1.7E-70 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 PANTHER PTHR18968:SF116 7 577 5.5E-222 T 23-04-2016 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 SUPERFAMILY SSF52467 163 358 1.93E-44 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 323 1.1E-32 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 SUPERFAMILY SSF52518 6 188 3.27E-52 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS17160 2b614bbc779ded1b98cca4dc17f7e618 577 Gene3D G3DSA:3.40.50.1220 194 347 6.2E-46 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 552 561 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 SUPERFAMILY SSF56762 1 561 2.49E-176 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 PANTHER PTHR11993:SF11 186 258 1.5E-187 T 23-04-2016 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 PANTHER PTHR11993:SF11 1 116 1.5E-187 T 23-04-2016 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 PANTHER PTHR11993:SF11 363 565 1.5E-187 T 23-04-2016 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 Gene3D G3DSA:1.10.645.10 1 127 3.8E-202 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 Gene3D G3DSA:1.10.645.10 171 561 3.8E-202 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 PANTHER PTHR11993 186 258 1.5E-187 T 23-04-2016 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 PANTHER PTHR11993 1 116 1.5E-187 T 23-04-2016 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 PANTHER PTHR11993 363 565 1.5E-187 T 23-04-2016 THIMO_RS03730 546018c3ebc1d19725360fa77d6fe5d6 576 Pfam PF00374 Nickel-dependent hydrogenase 39 561 1.4E-229 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 PANTHER PTHR11689:SF14 9 465 2.2E-52 T 23-04-2016 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 SUPERFAMILY SSF81340 13 443 5.36E-91 T 23-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 PANTHER PTHR11689 9 465 2.2E-52 T 23-04-2016 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 Pfam PF00654 Voltage gated chloride channel 83 422 4.7E-80 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 Gene3D G3DSA:1.10.3080.10 29 443 1.6E-76 T 23-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 390 409 8.5E-19 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 176 195 8.5E-19 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 372 388 8.5E-19 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 THIMO_RS09990 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 125 144 8.5E-19 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 87 101 1.4E-27 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 296 313 1.4E-27 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 116 126 1.4E-27 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 232 248 1.4E-27 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 182 194 1.4E-27 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 PANTHER PTHR22807 12 365 1.4E-92 T 23-04-2016 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 Gene3D G3DSA:3.40.50.150 98 313 5.4E-62 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 Pfam PF01189 16S rRNA methyltransferase RsmB/F 105 311 2.1E-50 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS18400 29c81f5b5051602d94a80dd957d85c19 490 SUPERFAMILY SSF53335 20 313 2.21E-66 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 SUPERFAMILY SSF55068 39 209 1.31E-71 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 45 205 37.046 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 Pfam PF01625 Peptide methionine sulfoxide reductase 47 199 1.3E-61 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 Gene3D G3DSA:3.30.1060.10 32 199 8.2E-73 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 PANTHER PTHR10173:SF29 7 220 3.9E-93 T 23-04-2016 THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 47 197 2.1E-53 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS02135 d30cde3e4be4c503fe0594e0531b005d 222 PANTHER PTHR10173 7 220 3.9E-93 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 THIMO_RS05455 3fdae2d08088ac188cf8387f92549238 358 Pfam PF00534 Glycosyl transferases group 1 167 334 4.0E-31 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS05455 3fdae2d08088ac188cf8387f92549238 358 Gene3D G3DSA:3.40.50.2000 145 334 1.2E-25 T 23-04-2016 THIMO_RS05455 3fdae2d08088ac188cf8387f92549238 358 Pfam PF13439 Glycosyltransferase Family 4 16 155 3.6E-8 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS05455 3fdae2d08088ac188cf8387f92549238 358 SUPERFAMILY SSF53756 15 353 1.96E-72 T 23-04-2016 THIMO_RS05455 3fdae2d08088ac188cf8387f92549238 358 PANTHER PTHR12526 16 353 1.8E-48 T 23-04-2016 THIMO_RS09560 b6b894a16e2a655e0d84da0f652d8bfe 125 SUPERFAMILY SSF53146 12 119 4.45E-27 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS09560 b6b894a16e2a655e0d84da0f652d8bfe 125 Gene3D G3DSA:3.30.420.130 11 117 6.5E-29 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS09560 b6b894a16e2a655e0d84da0f652d8bfe 125 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 23 115 6.5E-18 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS09560 b6b894a16e2a655e0d84da0f652d8bfe 125 PANTHER PTHR33937 12 119 3.8E-15 T 23-04-2016 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 Gene3D G3DSA:3.40.50.1820 6 312 2.2E-68 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PIRSF PIRSF006431 3 319 3.6E-138 T 23-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PANTHER PTHR10992:SF860 216 315 2.2E-119 T 23-04-2016 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PANTHER PTHR10992:SF860 7 178 2.2E-119 T 23-04-2016 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 67 78 2.8E-14 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 110 124 2.8E-14 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 41 49 2.8E-14 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 SUPERFAMILY SSF53474 9 302 3.6E-61 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 13 315 1.0E-129 T 23-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 64 79 3.2E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 3.2E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 3.2E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PANTHER PTHR10992 216 315 2.2E-119 T 23-04-2016 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 PANTHER PTHR10992 7 178 2.2E-119 T 23-04-2016 THIMO_RS08820 ff8bf77f3d4dc349532aa11fa714d7aa 320 Pfam PF00561 alpha/beta hydrolase fold 42 301 1.4E-29 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 PIRSF PIRSF005900 2 160 1.8E-46 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 41 57 6.8E-13 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 65 81 6.8E-13 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 136 154 6.8E-13 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 PANTHER PTHR30295:SF6 1 160 1.7E-69 T 23-04-2016 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 Pfam PF00210 Ferritin-like domain 23 159 1.5E-30 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 ProSitePatterns PS00818 Dps protein family signature 1. 41 57 - T 23-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 Gene3D G3DSA:1.20.1260.10 5 159 8.5E-67 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 PANTHER PTHR30295 1 160 1.7E-69 T 23-04-2016 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 ProSitePatterns PS00819 Dps protein family signature 2. 67 81 - T 23-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 THIMO_RS00580 44b80ee339c8325c138b684b438e7b31 160 SUPERFAMILY SSF47240 9 159 8.12E-48 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 SUPERFAMILY SSF55681 96 341 9.66E-82 T 23-04-2016 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 Gene3D G3DSA:3.30.930.10 13 341 3.4E-129 T 23-04-2016 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 24 91 2.5E-27 T 23-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 12 341 49.318 T 23-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 43 341 5.6E-101 T 23-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 SUPERFAMILY SSF46589 17 103 1.78E-20 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 Pfam PF01409 tRNA synthetases class II core domain (F) 96 341 7.7E-103 T 23-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 PANTHER PTHR11538 94 341 5.1E-107 T 23-04-2016 THIMO_RS13455 ed94e46e428d1d20928fcfcd3596a844 342 PANTHER PTHR11538 43 56 5.1E-107 T 23-04-2016 THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 11 271 1.8E-92 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 PANTHER PTHR11935:SF7 9 271 5.4E-81 T 23-04-2016 THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 185 271 1.2E-22 T 23-04-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 SMART SM00849 19 184 1.3E-24 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 PIRSF PIRSF005457 5 272 5.8E-87 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 SUPERFAMILY SSF56281 9 271 1.54E-62 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Gene3D G3DSA:3.60.15.10 11 271 3.1E-78 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 9 272 41.318 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Pfam PF00753 Metallo-beta-lactamase superfamily 22 184 7.0E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS03660 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 PANTHER PTHR11935 9 271 5.4E-81 T 23-04-2016 THIMO_RS12940 9d7ee0099f2fab628bc3f858579f4e52 398 TIGRFAM TIGR03233 DNA_S_dndB: DNA sulfur modification protein DndB 7 354 1.6E-143 T 23-04-2016 IPR017642 DNA sulphur modification protein DndB THIMO_RS12940 9d7ee0099f2fab628bc3f858579f4e52 398 TIGRFAM TIGR03187 DGQHR: DGQHR domain 11 284 6.7E-79 T 23-04-2016 IPR017601 DGQHR-containing domain THIMO_RS12940 9d7ee0099f2fab628bc3f858579f4e52 398 Pfam PF14072 DNA-sulfur modification-associated 9 342 3.3E-114 T 23-04-2016 IPR017642 DNA sulphur modification protein DndB THIMO_RS10395 9d66e74cbd7b0a1289eb2d734dd828cc 246 SUPERFAMILY SSF50346 2 109 8.44E-23 T 23-04-2016 IPR011033 PRC-barrel-like THIMO_RS10395 9d66e74cbd7b0a1289eb2d734dd828cc 246 SUPERFAMILY SSF50346 88 245 2.35E-22 T 23-04-2016 IPR011033 PRC-barrel-like THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.40.50.2000 214 425 5.7E-25 T 23-04-2016 THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 PANTHER PTHR12526 9 488 1.4E-160 T 23-04-2016 THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Pfam PF13439 Glycosyltransferase Family 4 33 229 4.9E-18 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 SUPERFAMILY SSF56784 470 682 3.3E-23 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Pfam PF00534 Glycosyl transferases group 1 250 411 2.3E-22 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 470 707 5.2E-78 T 23-04-2016 IPR006380 Sucrose-phosphatase, N-terminal THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 PANTHER PTHR12526:SF386 9 488 1.4E-160 T 23-04-2016 THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 SUPERFAMILY SSF53756 28 448 1.57E-68 T 23-04-2016 THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 TIGRFAM TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain 8 445 8.0E-208 T 23-04-2016 IPR012822 Sucrose-phosphate synthase, glycosyltransferase domain THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.40.50.1000 623 705 1.6E-25 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.40.50.1000 470 547 1.6E-25 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.90.1070.10 557 622 1.3E-20 T 23-04-2016 THIMO_RS06455 7f5b9e8af5c35a111256e7f7434db774 729 TIGRFAM TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucrose phosphatase-like domain 472 707 6.8E-96 T 23-04-2016 IPR012821 Sucrose phosphate synthase, sucrose phosphatase-like domain THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 PANTHER PTHR33490:SF6 1 290 1.6E-73 T 23-04-2016 THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 PANTHER PTHR33490 1 290 1.6E-73 T 23-04-2016 THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 SMART SM00460 176 246 1.3E-18 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 Gene3D G3DSA:3.90.260.10 173 255 2.7E-10 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 82 1.4E-25 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 SUPERFAMILY SSF54001 7 274 1.22E-41 T 23-04-2016 THIMO_RS11185 2cba7bccf46b6ba4f3f420786a60b3d4 292 Pfam PF01841 Transglutaminase-like superfamily 142 244 1.6E-21 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 Gene3D G3DSA:3.40.640.10 56 245 4.3E-50 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 Gene3D G3DSA:3.90.1150.10 246 355 2.3E-32 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 PANTHER PTHR11751:SF398 3 354 1.0E-70 T 23-04-2016 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 PANTHER PTHR11751 3 354 1.0E-70 T 23-04-2016 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 10 355 9.8E-96 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 Pfam PF00155 Aminotransferase class I and II 34 354 6.3E-43 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 8 358 56.855 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 THIMO_RS13095 7dc418561868ae32c34937545caff2dd 358 SUPERFAMILY SSF53383 10 357 2.72E-72 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS07765 ef0908ee4b37cf68362e0b3e21e20d0c 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 90 7.7E-22 T 23-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein THIMO_RS07765 ef0908ee4b37cf68362e0b3e21e20d0c 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 5.9E-30 T 23-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 14 323 6.5E-83 T 23-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 SUPERFAMILY SSF55681 8 319 4.04E-54 T 23-04-2016 THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 Pfam PF13393 Histidyl-tRNA synthetase 11 321 7.4E-116 T 23-04-2016 THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 PANTHER PTHR11476:SF5 9 364 1.5E-56 T 23-04-2016 THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 PANTHER PTHR11476 9 364 1.5E-56 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 Gene3D G3DSA:3.30.930.10 23 321 3.9E-63 T 23-04-2016 THIMO_RS11415 995a154ed5f6e420710f859bf0e84aeb 393 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 18 374 32.641 T 23-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 THIMO_RS11105 5f2ca5d0e1786f9a38af1f04c470eff4 135 PANTHER PTHR21016 4 70 3.6E-23 T 23-04-2016 THIMO_RS11105 5f2ca5d0e1786f9a38af1f04c470eff4 135 Pfam PF05154 TM2 domain 7 54 4.8E-15 T 23-04-2016 IPR007829 TM2 domain THIMO_RS11105 5f2ca5d0e1786f9a38af1f04c470eff4 135 Pfam PF05154 TM2 domain 71 119 2.7E-14 T 23-04-2016 IPR007829 TM2 domain THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 SUPERFAMILY SSF50104 121 173 9.93E-6 T 23-04-2016 IPR008991 Translation protein SH3-like domain THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 PANTHER PTHR30265 10 174 2.6E-27 T 23-04-2016 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 SUPERFAMILY SSF82679 16 115 4.05E-26 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 Pfam PF02357 Transcription termination factor nusG 17 110 1.8E-19 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 SMART SM00738 15 114 2.1E-17 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 18 172 2.3E-46 T 23-04-2016 IPR010215 Transcription antitermination protein RfaH GO:0006355 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 Gene3D G3DSA:3.30.70.940 17 115 1.5E-17 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 PANTHER PTHR30265:SF3 10 174 2.6E-27 T 23-04-2016 THIMO_RS17290 a1c2c4d8ca7db8b1e3172803c14d6b20 175 Gene3D G3DSA:2.30.30.30 119 172 1.3E-4 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 284 2.3E-66 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 SMART SM00886 297 389 2.8E-15 T 23-04-2016 IPR013097 Stress responsive alpha-beta barrel THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 PANTHER PTHR30304 1 284 2.9E-69 T 23-04-2016 THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 283 6.0E-83 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 Pfam PF07876 Stress responsive A/B Barrel Domain 297 388 7.4E-12 T 23-04-2016 IPR013097 Stress responsive alpha-beta barrel THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 Gene3D G3DSA:3.20.20.70 1 284 9.1E-89 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 SUPERFAMILY SSF51569 2 284 4.98E-78 T 23-04-2016 THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 SUPERFAMILY SSF54909 297 389 8.94E-14 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel THIMO_RS01860 17761c80b9547aa00b770738b7ccb630 390 Gene3D G3DSA:3.30.70.900 297 389 2.7E-19 T 23-04-2016 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 Pfam PF13857 Ankyrin repeats (many copies) 132 173 2.8E-7 T 23-04-2016 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 Gene3D G3DSA:1.25.40.20 19 188 5.3E-45 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 PANTHER PTHR24188 29 182 3.4E-42 T 23-04-2016 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 SUPERFAMILY SSF48403 27 186 7.32E-44 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 67 96 2.6E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 100 129 0.0012 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 134 163 6.9E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 34 63 210.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS07045 d91e96f74a04632cad0e258828ec057e 193 Pfam PF12796 Ankyrin repeats (3 copies) 39 129 3.7E-16 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 Pfam PF00561 alpha/beta hydrolase fold 34 166 3.0E-17 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 Gene3D G3DSA:3.40.50.1820 11 295 4.4E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 SUPERFAMILY SSF53474 8 294 3.78E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 9.22E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 9.22E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 9.22E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 PANTHER PTHR10992 199 300 5.4E-37 T 23-04-2016 THIMO_RS13780 fb7d959ce421eea1b99f6aa9312ccb4d 319 PANTHER PTHR10992 14 174 5.4E-37 T 23-04-2016 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 PANTHER PTHR10314:SF4 74 131 2.9E-25 T 23-04-2016 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 PANTHER PTHR10314:SF4 1 51 2.9E-25 T 23-04-2016 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 Pfam PF00290 Tryptophan synthase alpha chain 8 263 2.4E-90 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 SUPERFAMILY SSF51366 1 263 2.54E-92 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 Gene3D G3DSA:3.20.20.70 1 266 4.6E-103 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 23-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 PANTHER PTHR10314 74 131 2.9E-25 T 23-04-2016 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 PANTHER PTHR10314 1 51 2.9E-25 T 23-04-2016 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 264 35.21 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS12660 b3f23be8f51179836de520e344109c05 271 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 9 261 4.7E-78 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 586 697 8.1E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 SUPERFAMILY SSF47384 470 539 3.53E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 SUPERFAMILY SSF55874 530 697 3.41E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 Gene3D G3DSA:1.10.287.130 471 526 1.4E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PANTHER PTHR24423 251 269 3.7E-60 T 23-04-2016 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PANTHER PTHR24423 56 131 3.7E-60 T 23-04-2016 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PANTHER PTHR24423 472 701 3.7E-60 T 23-04-2016 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 660 678 1.0E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 639 1.0E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 696 1.0E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 653 1.0E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 SMART SM00388 474 540 4.4E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 Pfam PF00512 His Kinase A (phospho-acceptor) domain 475 538 6.5E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 Gene3D G3DSA:3.30.565.10 527 698 8.8E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10275 c464722c12abc6ae275536f2f2d4342e 701 SMART SM00387 585 699 2.5E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 SUPERFAMILY SSF57716 81 119 1.28E-6 T 23-04-2016 THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 PANTHER PTHR33823:SF2 1 120 1.4E-38 T 23-04-2016 THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 PANTHER PTHR33823 1 120 1.4E-38 T 23-04-2016 THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 79 113 1.7E-9 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 1 111 2.5E-42 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 SUPERFAMILY SSF109635 1 80 1.07E-25 T 23-04-2016 THIMO_RS02570 63c1023901b9258726f81359c8e4e6ef 122 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 1 120 26.393 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 Gene3D G3DSA:3.30.450.20 13 116 6.3E-19 T 23-04-2016 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 SUPERFAMILY SSF47384 129 201 2.55E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 SMART SM00387 242 357 2.7E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 Pfam PF00512 His Kinase A (phospho-acceptor) domain 141 200 1.9E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PANTHER PTHR24423 8 273 2.7E-102 T 23-04-2016 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PANTHER PTHR24423 289 360 2.7E-102 T 23-04-2016 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 Gene3D G3DSA:3.30.565.10 202 356 4.4E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 SUPERFAMILY SSF55785 14 107 1.47E-10 T 23-04-2016 IPR000014 PAS domain THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PANTHER PTHR24423:SF488 8 273 2.7E-102 T 23-04-2016 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PANTHER PTHR24423:SF488 289 360 2.7E-102 T 23-04-2016 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 SUPERFAMILY SSF55874 205 355 3.14E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 SMART SM00388 138 203 7.0E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 Gene3D G3DSA:1.10.287.130 134 195 4.7E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 317 1.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 354 1.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 336 1.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 303 1.2E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 Pfam PF08448 PAS fold 16 106 1.1E-7 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS17485 e518a43f5e73808f08f5c8230e3709c3 360 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 243 356 2.3E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 323 3.9E-21 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 SMART SM00382 41 234 4.0E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 PANTHER PTHR24220:SF81 8 323 3.6E-137 T 23-04-2016 THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 Pfam PF00005 ABC transporter 33 184 2.8E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 Gene3D G3DSA:3.40.50.300 7 258 3.9E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 PANTHER PTHR24220 8 323 3.6E-137 T 23-04-2016 THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 SUPERFAMILY SSF52540 7 256 1.45E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10325 ab005aebc893cb9513fb03085287d659 325 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 5.9E-15 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Gene3D G3DSA:3.40.50.300 95 297 9.1E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 SUPERFAMILY SSF47446 298 431 1.31E-44 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 1.5E-72 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 SUPERFAMILY SSF52540 42 351 1.71E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 PANTHER PTHR11564:SF7 1 435 2.2E-254 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Gene3D G3DSA:1.20.120.140 2 88 1.3E-35 T 23-04-2016 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 SMART SM00962 100 296 9.6E-116 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 PANTHER PTHR11564 1 435 2.2E-254 T 23-04-2016 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 SMART SM00963 1 86 9.4E-36 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Pfam PF02978 Signal peptide binding domain 329 427 1.5E-32 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 6.4E-177 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 SMART SM00382 99 252 3.1E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 8.6E-21 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.212 T 23-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS02425 6572ff778aa6f5e2ff258565c907c910 463 Gene3D G3DSA:1.10.260.30 329 431 5.6E-40 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 SUPERFAMILY SSF52540 1 70 2.72E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 SUPERFAMILY SSF52540 141 262 2.72E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 Gene3D G3DSA:3.40.50.300 2 53 1.7E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 Gene3D G3DSA:3.40.50.300 105 271 1.7E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 PANTHER PTHR13696:SF64 1 276 4.9E-60 T 23-04-2016 THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 Pfam PF00037 4Fe-4S binding domain 93 114 3.7E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 SUPERFAMILY SSF54862 55 118 7.27E-15 T 23-04-2016 THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 228 1.6E-29 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 Gene3D G3DSA:3.30.70.20 62 104 9.2E-11 T 23-04-2016 THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 PANTHER PTHR13696 1 276 4.9E-60 T 23-04-2016 THIMO_RS04030 3a1284afa9673d96fa0a70421b421d60 289 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 PANTHER PTHR30065:SF1 1 249 8.0E-76 T 23-04-2016 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 PANTHER PTHR30065 1 249 8.0E-76 T 23-04-2016 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 251 1.0E-67 T 23-04-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 Pfam PF01311 Bacterial export proteins, family 1 13 244 2.4E-65 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 7.4E-26 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 7.4E-26 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 7.4E-26 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 THIMO_RS01355 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 7.4E-26 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 THIMO_RS03530 bdc88caec2641f5fb2930a7c6a4d0ae9 138 Gene3D G3DSA:2.60.120.460 1 132 3.5E-43 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS03530 bdc88caec2641f5fb2930a7c6a4d0ae9 138 SUPERFAMILY SSF111038 4 132 1.24E-40 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS03530 bdc88caec2641f5fb2930a7c6a4d0ae9 138 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 128 9.5E-41 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS03530 bdc88caec2641f5fb2930a7c6a4d0ae9 138 PIRSF PIRSF004681 1 134 4.1E-37 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS03530 bdc88caec2641f5fb2930a7c6a4d0ae9 138 Pfam PF01894 Uncharacterised protein family UPF0047 17 131 8.4E-38 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS03530 bdc88caec2641f5fb2930a7c6a4d0ae9 138 PANTHER PTHR30615 1 137 3.0E-53 T 23-04-2016 THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 3 105 2.3E-30 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 Gene3D G3DSA:1.10.10.370 41 105 4.3E-23 T 23-04-2016 THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 SUPERFAMILY SSF69721 2 105 1.96E-30 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 Gene3D G3DSA:3.30.1420.10 3 40 2.4E-13 T 23-04-2016 THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 PIRSF PIRSF006223 3 109 2.5E-31 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 PANTHER PTHR37010 3 104 6.8E-31 T 23-04-2016 THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 PANTHER PTHR37010:SF1 3 104 6.8E-31 T 23-04-2016 THIMO_RS02575 97af3caaa722724c66e5517a7c43bfa8 112 Pfam PF04358 DsrC like protein 4 105 6.3E-35 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 SUPERFAMILY SSF75138 207 334 6.67E-25 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.1390.20 208 347 7.2E-33 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 PANTHER PTHR23406:SF3 148 693 4.3E-57 T 23-04-2016 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 Pfam PF13500 AAA domain 2 208 1.6E-22 T 23-04-2016 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 SUPERFAMILY SSF52540 1 218 5.93E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 Pfam PF01515 Phosphate acetyl/butaryl transferase 371 688 4.0E-132 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.50.300 1 207 3.2E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 Pfam PF07085 DRTGG domain 212 325 2.3E-27 T 23-04-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 SUPERFAMILY SSF53659 371 691 1.27E-99 T 23-04-2016 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.50.10750 506 664 7.1E-69 T 23-04-2016 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 387 688 3.9E-132 T 23-04-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 PIRSF PIRSF006107 1 696 7.6E-187 T 23-04-2016 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 THIMO_RS09245 8e69f758b8199d59ffa55c57ba91b714 707 PANTHER PTHR23406 148 693 4.3E-57 T 23-04-2016 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 8.0E-231 T 23-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 3.4E-38 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Gene3D G3DSA:3.30.1490.20 130 203 1.3E-27 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Gene3D G3DSA:3.30.470.20 204 444 3.5E-101 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 PANTHER PTHR18866 1 442 4.8E-293 T 23-04-2016 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SUPERFAMILY SSF52440 1 113 4.24E-47 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SUPERFAMILY SSF51246 331 444 1.2E-41 T 23-04-2016 IPR011054 Rudiment single hybrid motif THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 2.1E-83 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SUPERFAMILY SSF56059 83 342 2.3E-68 T 23-04-2016 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SMART SM00878 336 441 7.1E-62 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Gene3D G3DSA:3.40.50.20 1 129 1.8E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS00885 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 7.7E-45 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 16 115 6.1E-27 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 PIRSF PIRSF006223 11 117 1.3E-29 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 Gene3D G3DSA:1.10.10.370 47 115 3.4E-21 T 23-04-2016 THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 Gene3D G3DSA:3.30.1420.10 17 46 8.2E-6 T 23-04-2016 THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 SUPERFAMILY SSF69721 16 116 1.27E-26 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 PANTHER PTHR37010 16 120 1.8E-24 T 23-04-2016 THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 PANTHER PTHR37010:SF1 16 120 1.8E-24 T 23-04-2016 THIMO_RS06695 53b69d021cca0c65b57d1a98714a9d5a 120 Pfam PF04358 DsrC like protein 16 115 3.0E-30 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 358 2.0E-109 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 540 24.647 T 23-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 2 23 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 421 444 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 257 272 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 80 101 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 504 527 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 170 190 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 330 350 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 468 490 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 224 242 9.4E-84 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 359 538 4.6E-71 T 23-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PANTHER PTHR12428:SF14 177 540 3.4E-109 T 23-04-2016 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PANTHER PTHR12428 177 540 3.4E-109 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 Pfam PF14849 YidC periplasmic domain 75 349 8.2E-86 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 Pfam PF02096 60Kd inner membrane protein 360 538 2.2E-60 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR01900 YidC translocation/secretion protein signature 474 489 1.2E-24 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR01900 YidC translocation/secretion protein signature 345 361 1.2E-24 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS17595 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR01900 YidC translocation/secretion protein signature 493 517 1.2E-24 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 THIMO_RS00060 844c6eabf32bd147b6f813998b23f353 142 Gene3D G3DSA:1.20.120.20 46 120 9.5E-8 T 23-04-2016 THIMO_RS00060 844c6eabf32bd147b6f813998b23f353 142 Pfam PF07798 Protein of unknown function (DUF1640) 45 141 5.3E-9 T 23-04-2016 IPR024461 Coiled-coil domain-containing protein 90-like THIMO_RS00060 844c6eabf32bd147b6f813998b23f353 142 SUPERFAMILY SSF58113 46 119 3.01E-7 T 23-04-2016 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 9 922 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF51621 698 922 9.77E-112 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF51621 518 653 9.77E-112 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.30.470.20 252 348 3.5E-36 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:1.10.189.10 351 407 7.3E-24 T 23-04-2016 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF00391 PEP-utilising enzyme, mobile domain 429 510 2.1E-26 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.20.20.60 698 922 5.6E-128 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.20.20.60 541 653 5.6E-128 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF52009 394 519 6.28E-35 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 PIRSF PIRSF000853 7 926 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 457 468 - T 23-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:1.20.80.30 118 204 2.2E-28 T 23-04-2016 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 309 364 4.3E-9 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 69 299 5.4E-30 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 58 1.9E-8 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.30.1490.20 206 251 3.5E-50 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.30.1490.20 9 117 3.5E-50 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 527 920 1.9E-86 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF56059 9 383 1.07E-126 T 23-04-2016 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 PANTHER PTHR22931 9 638 0.0 T 23-04-2016 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 PANTHER PTHR22931 694 922 0.0 T 23-04-2016 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 PANTHER PTHR22931:SF9 9 638 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 PANTHER PTHR22931:SF9 694 922 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS15840 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.50.30.10 408 513 6.3E-38 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS13175 c02e7acb461092b50f3513f703aed47a 151 SUPERFAMILY SSF55804 5 146 5.62E-37 T 23-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 THIMO_RS13175 c02e7acb461092b50f3513f703aed47a 151 PANTHER PTHR30505 5 147 1.5E-44 T 23-04-2016 THIMO_RS13175 c02e7acb461092b50f3513f703aed47a 151 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 1.3E-35 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- THIMO_RS13175 c02e7acb461092b50f3513f703aed47a 151 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- THIMO_RS13175 c02e7acb461092b50f3513f703aed47a 151 PANTHER PTHR30505:SF6 5 147 1.5E-44 T 23-04-2016 THIMO_RS13175 c02e7acb461092b50f3513f703aed47a 151 Gene3D G3DSA:3.40.930.10 5 147 6.1E-42 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- THIMO_RS10475 c64efb312d08cedde6f7d702bfb390d5 244 PANTHER PTHR30616:SF3 1 243 1.1E-119 T 23-04-2016 THIMO_RS10475 c64efb312d08cedde6f7d702bfb390d5 244 SUPERFAMILY SSF64438 2 241 6.96E-84 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic THIMO_RS10475 c64efb312d08cedde6f7d702bfb390d5 244 PANTHER PTHR30616 1 243 1.1E-119 T 23-04-2016 THIMO_RS10475 c64efb312d08cedde6f7d702bfb390d5 244 Gene3D G3DSA:3.60.140.10 2 241 5.3E-96 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase THIMO_RS10475 c64efb312d08cedde6f7d702bfb390d5 244 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 241 2.7E-56 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase THIMO_RS10475 c64efb312d08cedde6f7d702bfb390d5 244 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 240 2.1E-74 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase THIMO_RS17425 f141e95ac0f64af87ae6717bc0e89a9c 184 PANTHER PTHR11019 1 182 7.0E-55 T 23-04-2016 THIMO_RS17425 f141e95ac0f64af87ae6717bc0e89a9c 184 PANTHER PTHR11019:SF100 1 182 7.0E-55 T 23-04-2016 THIMO_RS17425 f141e95ac0f64af87ae6717bc0e89a9c 184 Pfam PF01965 DJ-1/PfpI family 3 164 1.1E-44 T 23-04-2016 IPR002818 DJ-1/PfpI THIMO_RS17425 f141e95ac0f64af87ae6717bc0e89a9c 184 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 3 177 1.5E-51 T 23-04-2016 IPR006287 DJ-1 THIMO_RS17425 f141e95ac0f64af87ae6717bc0e89a9c 184 Gene3D G3DSA:3.40.50.880 1 181 5.9E-54 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS17425 f141e95ac0f64af87ae6717bc0e89a9c 184 SUPERFAMILY SSF52317 1 181 2.62E-50 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS16595 82f081ce010eb05ea5836477ab6246a1 232 SUPERFAMILY SSF53335 20 192 9.45E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16595 82f081ce010eb05ea5836477ab6246a1 232 Pfam PF08241 Methyltransferase domain 38 140 2.0E-10 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS16595 82f081ce010eb05ea5836477ab6246a1 232 Gene3D G3DSA:3.40.50.150 20 192 4.2E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 SUPERFAMILY SSF55298 145 241 8.08E-5 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 Pfam PF01042 Endoribonuclease L-PSP 279 377 1.8E-8 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 PANTHER PTHR11803 178 386 7.3E-56 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 Gene3D G3DSA:3.30.1330.40 267 380 2.4E-18 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 Gene3D G3DSA:3.30.1330.40 152 241 2.3E-4 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 PANTHER PTHR11803:SF13 178 386 7.3E-56 T 23-04-2016 THIMO_RS03180 736378a12745878fc32a5e4f167fe43e 388 SUPERFAMILY SSF55298 279 379 3.7E-18 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 ProSitePatterns PS00892 HIT domain signature. 93 111 - T 23-04-2016 IPR019808 Histidine triad, conserved site THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 Gene3D G3DSA:3.30.428.10 13 131 2.2E-35 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 Pfam PF01230 HIT domain 24 114 7.4E-21 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 PANTHER PTHR23089 26 128 4.6E-30 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 PRINTS PR00332 Histidine triad family signature 100 110 8.1E-6 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 PRINTS PR00332 Histidine triad family signature 33 51 8.1E-6 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS05810 70e4c85ed78db89e601e371250c6c133 139 SUPERFAMILY SSF54197 14 122 3.54E-36 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 PANTHER PTHR11451 1 219 1.8E-87 T 23-04-2016 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 SUPERFAMILY SSF52374 1 273 8.59E-74 T 23-04-2016 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 1 225 6.6E-35 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 1 279 37.404 T 23-04-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 Gene3D G3DSA:3.90.800.10 54 159 1.6E-20 T 23-04-2016 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 PANTHER PTHR11451:SF35 1 219 1.8E-87 T 23-04-2016 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 1 248 2.4E-101 T 23-04-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 Gene3D G3DSA:3.40.50.620 162 211 1.0E-32 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS10945 eb536f98020773a0a96860f4bbf971db 290 Gene3D G3DSA:3.40.50.620 1 53 1.0E-32 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS01480 9ff6739fcd4b89e68f09a22dfc8f3fd8 110 Gene3D G3DSA:3.30.460.10 20 93 1.9E-5 T 23-04-2016 THIMO_RS14180 5cfdb54657170a37440619df94c14b2d 188 Pfam PF08212 Lipocalin-like domain 37 182 2.7E-44 T 23-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain THIMO_RS14180 5cfdb54657170a37440619df94c14b2d 188 SUPERFAMILY SSF50814 13 182 1.28E-42 T 23-04-2016 IPR011038 Calycin-like THIMO_RS14180 5cfdb54657170a37440619df94c14b2d 188 PANTHER PTHR10612 12 184 8.6E-41 T 23-04-2016 THIMO_RS14180 5cfdb54657170a37440619df94c14b2d 188 PIRSF PIRSF036893 7 188 5.3E-54 T 23-04-2016 IPR022271 Lipocalin, ApoD type THIMO_RS14180 5cfdb54657170a37440619df94c14b2d 188 Gene3D G3DSA:2.40.128.20 16 183 3.8E-51 T 23-04-2016 IPR012674 Calycin THIMO_RS14180 5cfdb54657170a37440619df94c14b2d 188 ProSitePatterns PS00213 Lipocalin signature. 36 49 - T 23-04-2016 IPR022272 Lipocalin family conserved site THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Gene3D G3DSA:3.50.50.60 2 81 1.7E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Gene3D G3DSA:3.50.50.60 135 215 1.7E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Gene3D G3DSA:3.50.50.60 303 357 1.7E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 PANTHER PTHR13847:SF180 4 358 1.5E-73 T 23-04-2016 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 4 346 1.6E-84 T 23-04-2016 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 UniPathway: UPA00060 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 SUPERFAMILY SSF54373 216 303 5.23E-18 T 23-04-2016 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 SUPERFAMILY SSF51905 3 216 7.12E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 SUPERFAMILY SSF51905 303 358 7.12E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Pfam PF01266 FAD dependent oxidoreductase 4 342 5.3E-63 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 THIMO_RS11925 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 PANTHER PTHR13847 4 358 1.5E-73 T 23-04-2016 THIMO_RS06535 5c9a9b46e1a36c17baa78691a60d4572 76 Pfam PF13488 Glycine zipper 31 70 2.6E-10 T 23-04-2016 THIMO_RS07805 e06cea9c17f13bffc7c50b977c7dbc1c 184 PANTHER PTHR14269 6 105 2.0E-19 T 23-04-2016 THIMO_RS07805 e06cea9c17f13bffc7c50b977c7dbc1c 184 PIRSF PIRSF000847 2 183 4.8E-38 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 THIMO_RS07805 e06cea9c17f13bffc7c50b977c7dbc1c 184 Pfam PF01066 CDP-alcohol phosphatidyltransferase 6 69 7.0E-14 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 Gene3D G3DSA:3.20.20.70 1 249 8.5E-104 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 239 1.5E-69 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 SUPERFAMILY SSF51351 1 248 6.02E-95 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 Pfam PF00121 Triosephosphate isomerase 5 246 2.4E-88 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 23-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 PANTHER PTHR21139 1 252 2.0E-127 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 THIMO_RS02775 272ee98572838d3cb58892760415e54a 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 40.778 T 23-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 PANTHER PTHR11948 8 282 6.8E-42 T 23-04-2016 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 SUPERFAMILY SSF51690 111 279 1.33E-33 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 112 278 1.1E-24 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 Gene3D G3DSA:3.20.20.70 135 269 6.1E-31 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 Gene3D G3DSA:3.90.1170.20 4 134 5.8E-26 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 PANTHER PTHR11948:SF1 8 282 6.8E-42 T 23-04-2016 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 TIGRFAM TIGR01334 modD: modD protein 9 279 8.1E-82 T 23-04-2016 IPR006242 Putative pyrophosphorylase ModD GO:0016763 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 PIRSF PIRSF006250 7 282 1.6E-51 T 23-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 22 109 2.0E-18 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 THIMO_RS02955 b5cdc961e5e3f60a4d702d54d04f7109 282 SUPERFAMILY SSF54675 5 110 2.16E-21 T 23-04-2016 THIMO_RS06185 de556d1ba4ab3cf6910680966b614b87 228 SUPERFAMILY SSF53098 37 213 2.72E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS06185 de556d1ba4ab3cf6910680966b614b87 228 PANTHER PTHR30231:SF11 40 213 3.1E-42 T 23-04-2016 THIMO_RS06185 de556d1ba4ab3cf6910680966b614b87 228 Pfam PF00929 Exonuclease 46 208 1.2E-15 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS06185 de556d1ba4ab3cf6910680966b614b87 228 PANTHER PTHR30231 40 213 3.1E-42 T 23-04-2016 THIMO_RS06185 de556d1ba4ab3cf6910680966b614b87 228 SMART SM00479 43 217 7.8E-27 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS06185 de556d1ba4ab3cf6910680966b614b87 228 Gene3D G3DSA:3.30.420.10 39 214 1.6E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SUPERFAMILY SSF158791 44 163 7.85E-25 T 23-04-2016 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF00571 CBS domain 166 222 3.3E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF00571 CBS domain 238 285 7.9E-4 T 23-04-2016 IPR000644 CBS domain THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Gene3D G3DSA:3.10.580.10 158 290 2.4E-16 T 23-04-2016 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Gene3D G3DSA:1.25.60.10 40 157 4.6E-22 T 23-04-2016 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 TIGRFAM TIGR00400 mgtE: magnesium transporter 45 479 3.0E-80 T 23-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF03448 MgtE intracellular N domain 63 164 2.6E-23 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SUPERFAMILY SSF161093 308 479 3.14E-48 T 23-04-2016 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF01769 Divalent cation transporter 351 473 3.2E-25 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 PANTHER PTHR41394:SF1 66 479 4.5E-40 T 23-04-2016 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Gene3D G3DSA:1.10.357.20 308 479 5.7E-53 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SMART SM00924 63 166 7.0E-32 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SMART SM00116 173 226 0.047 T 23-04-2016 IPR000644 CBS domain THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SMART SM00116 238 286 0.84 T 23-04-2016 IPR000644 CBS domain THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SUPERFAMILY SSF54631 165 305 1.04E-25 T 23-04-2016 THIMO_RS10215 63cf5a7e7d34f66c2bb468fcb269c3c5 480 PANTHER PTHR41394 66 479 4.5E-40 T 23-04-2016 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 SUPERFAMILY SSF48179 204 296 2.04E-24 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 SUPERFAMILY SSF52413 304 420 2.75E-26 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 PIRSF PIRSF000124 10 425 7.9E-49 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 Gene3D G3DSA:3.40.50.720 9 226 2.0E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 11 183 2.0E-30 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 PANTHER PTHR11374:SF25 10 424 2.2E-232 T 23-04-2016 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 294 6.4E-23 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 PANTHER PTHR11374 10 424 2.2E-232 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 SMART SM00984 321 421 2.9E-33 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 321 420 3.5E-20 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 11 416 3.2E-111 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 PIRSF PIRSF500136 1 428 2.8E-142 T 23-04-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 SUPERFAMILY SSF51735 11 194 1.56E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17100 10135b0577f389f08b0dc3dc13c2b678 428 Gene3D G3DSA:3.40.50.720 236 424 5.1E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 51 247 1.2E-82 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 176 191 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 4.5E-67 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 197 218 4.5E-67 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 68 88 4.5E-67 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 176 196 4.5E-67 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 88 107 4.5E-67 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 221 246 4.5E-67 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PANTHER PTHR30587:SF0 35 248 1.3E-113 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PANTHER PTHR30587 35 248 1.3E-113 T 23-04-2016 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 Pfam PF00813 FliP family 51 243 1.3E-77 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 224 236 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 107 119 1.6E-22 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 237 247 1.6E-22 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 147 159 1.6E-22 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 119 133 1.6E-22 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 47 56 1.6E-22 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS01345 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 169 181 1.6E-22 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 Gene3D G3DSA:1.10.10.10 124 188 5.9E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 Gene3D G3DSA:1.10.1740.10 3 105 4.2E-33 T 23-04-2016 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 PANTHER PTHR30173:SF1 1 187 8.8E-53 T 23-04-2016 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 190 1.5E-95 T 23-04-2016 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 SUPERFAMILY SSF88659 123 186 2.43E-18 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 Pfam PF08281 Sigma-70, region 4 130 181 4.3E-18 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 SUPERFAMILY SSF88946 2 105 5.65E-29 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 186 1.1E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 PANTHER PTHR30173 1 187 8.8E-53 T 23-04-2016 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 Pfam PF04542 Sigma-70 region 2 25 92 5.3E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08710 3e0ca0b14498856e10d2adcacd16553c 192 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 23-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:3.40.50.300 339 518 2.1E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 TIGRFAM TIGR00763 lon: endopeptidase La 38 795 3.6E-286 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 SUPERFAMILY SSF88697 38 229 8.95E-22 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 SMART SM00382 377 522 5.4E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Hamap MF_01973 Lon protease [lon]. 36 799 61.607 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 704 712 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 381 517 2.1E-22 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 SMART SM00464 35 230 2.7E-38 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 37 229 4.1E-27 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 SUPERFAMILY SSF54211 622 798 1.82E-47 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 SUPERFAMILY SSF52540 338 614 1.17E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:3.30.230.10 620 798 1.6E-65 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PANTHER PTHR10046 9 803 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:1.10.8.60 521 613 2.5E-27 T 23-04-2016 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 599 794 1.1E-74 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 701 720 1.1E-48 T 23-04-2016 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 753 771 1.1E-48 T 23-04-2016 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 730 749 1.1E-48 T 23-04-2016 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 385 404 1.1E-48 T 23-04-2016 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 622 638 1.1E-48 T 23-04-2016 THIMO_RS13765 6e1a9b64a2d246619e18c407009a1040 803 PIRSF PIRSF001174 25 802 1.1E-283 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 THIMO_RS11580 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 PANTHER PTHR10587:SF72 11 297 1.8E-123 T 23-04-2016 THIMO_RS11580 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 PANTHER PTHR10587 11 297 1.8E-123 T 23-04-2016 THIMO_RS11580 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 SUPERFAMILY SSF88713 5 299 6.18E-82 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 THIMO_RS11580 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 Gene3D G3DSA:3.20.20.370 5 299 1.1E-92 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 THIMO_RS11580 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 Pfam PF01522 Polysaccharide deacetylase 76 173 2.0E-12 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 PANTHER PTHR30006 1 331 5.9E-84 T 23-04-2016 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 Pfam PF13343 Bacterial extracellular solute-binding protein 75 311 1.9E-26 T 23-04-2016 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 119 136 - T 23-04-2016 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 PIRSF PIRSF002825 12 331 1.3E-82 T 23-04-2016 IPR026045 Ferric binding protein THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 SUPERFAMILY SSF53850 21 319 2.72E-70 T 23-04-2016 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 Gene3D G3DSA:3.40.190.10 122 260 2.6E-39 T 23-04-2016 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 PANTHER PTHR30006:SF6 1 331 5.9E-84 T 23-04-2016 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 Gene3D G3DSA:3.40.190.10 9 120 4.3E-36 T 23-04-2016 THIMO_RS08400 d1d3104bc0452d47654f580cf7ae5af2 331 Gene3D G3DSA:3.40.190.10 261 319 4.3E-36 T 23-04-2016 THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 Gene3D G3DSA:3.30.565.10 284 424 1.3E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 SUPERFAMILY SSF47384 195 275 3.53E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 Gene3D G3DSA:1.10.287.130 205 274 4.6E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 277 6.9E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 423 9.4E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 PANTHER PTHR24423 152 425 1.2E-44 T 23-04-2016 THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 PANTHER PTHR24423 3 13 1.2E-44 T 23-04-2016 THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 SUPERFAMILY SSF55874 283 425 4.85E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 SMART SM00387 324 429 8.7E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS01055 f3eca6923798132794ce90710dec6617 433 SMART SM00388 212 278 3.5E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16480 4f449148bcb842e7bfc7d118ed74ee65 157 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 60 97 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 THIMO_RS16480 4f449148bcb842e7bfc7d118ed74ee65 157 Gene3D G3DSA:3.40.140.10 9 155 2.9E-58 T 23-04-2016 THIMO_RS16480 4f449148bcb842e7bfc7d118ed74ee65 157 Pfam PF14437 MafB19-like deaminase 12 157 8.9E-28 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 THIMO_RS16480 4f449148bcb842e7bfc7d118ed74ee65 157 SUPERFAMILY SSF53927 11 157 4.18E-55 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 THIMO_RS16480 4f449148bcb842e7bfc7d118ed74ee65 157 PANTHER PTHR11079 12 157 2.0E-47 T 23-04-2016 THIMO_RS16480 4f449148bcb842e7bfc7d118ed74ee65 157 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 15 157 46.927 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 THIMO_RS10370 a4cce218bae7e38c1bd37fa9cf63649c 496 PANTHER PTHR11819 5 491 7.0E-165 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS10370 a4cce218bae7e38c1bd37fa9cf63649c 496 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 493 2.5E-202 T 23-04-2016 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 THIMO_RS10370 a4cce218bae7e38c1bd37fa9cf63649c 496 PANTHER PTHR11819:SF148 5 491 7.0E-165 T 23-04-2016 THIMO_RS10370 a4cce218bae7e38c1bd37fa9cf63649c 496 Pfam PF00474 Sodium:solute symporter family 36 440 1.7E-105 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS10370 a4cce218bae7e38c1bd37fa9cf63649c 496 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 422 442 - T 23-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 THIMO_RS10370 a4cce218bae7e38c1bd37fa9cf63649c 496 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 440 5.9E-99 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 Pfam PF13416 Bacterial extracellular solute-binding protein 46 334 4.8E-25 T 23-04-2016 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PANTHER PTHR30222 1 368 1.5E-135 T 23-04-2016 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 95 108 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 314 340 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 182 201 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 128 144 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 219 238 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 35 51 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 269 288 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 51 72 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 159 173 2.4E-52 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 Gene3D G3DSA:3.40.190.10 31 149 5.3E-16 T 23-04-2016 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 SUPERFAMILY SSF53850 29 367 6.14E-90 T 23-04-2016 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PANTHER PTHR30222:SF11 1 368 1.5E-135 T 23-04-2016 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 PIRSF PIRSF019574 1 370 1.0E-118 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 THIMO_RS04500 eee7e9036a80b3f014746e90e3403408 370 Gene3D G3DSA:3.40.190.10 150 318 1.3E-64 T 23-04-2016 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 366 3.0E-30 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 7.6E-44 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF53738 155 255 1.65E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.40.120.10 250 359 1.2E-32 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 444 46.039 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 1.3E-18 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF55957 357 446 2.09E-19 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF53738 257 364 2.75E-29 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.40.120.10 3 152 2.9E-47 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 PANTHER PTHR22573 3 451 6.8E-160 T 23-04-2016 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 PANTHER PTHR22573:SF15 3 451 6.8E-160 T 23-04-2016 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 441 2.3E-13 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 442 6.7E-185 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.40.120.10 175 248 3.9E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF53738 2 180 8.63E-49 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 5.9E-15 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 5.9E-15 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 5.9E-15 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS12190 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.30.310.50 360 442 8.2E-14 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 Gene3D G3DSA:4.10.520.10 1 95 4.6E-33 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 SMART SM00411 1 91 4.2E-41 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.869 T 23-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 Pfam PF00216 Bacterial DNA-binding protein 1 91 3.3E-29 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 PANTHER PTHR33175 1 111 4.3E-49 T 23-04-2016 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 SUPERFAMILY SSF47729 1 92 7.95E-31 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 92 4.7E-45 T 23-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 THIMO_RS08990 1e110d04817285808b30eb0e64853b32 116 PANTHER PTHR33175:SF5 1 111 4.3E-49 T 23-04-2016 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 14 430 2.7E-196 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 22 428 40.177 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 SUPERFAMILY SSF53686 28 428 1.44E-109 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 PIRSF PIRSF500824 2 437 2.1E-202 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 106 120 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 PANTHER PTHR10314 32 186 3.0E-235 T 23-04-2016 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 PANTHER PTHR10314 203 450 3.0E-235 T 23-04-2016 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 77 415 1.3E-41 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 Gene3D G3DSA:3.40.50.1100 125 216 4.6E-10 T 23-04-2016 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 Gene3D G3DSA:3.40.50.1100 217 432 2.5E-55 T 23-04-2016 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 PIRSF PIRSF001413 10 434 9.7E-125 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 PANTHER PTHR10314:SF21 32 186 3.0E-235 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS10105 2958024e8527dec40f917596040f0f93 453 PANTHER PTHR10314:SF21 203 450 3.0E-235 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 THIMO_RS05480 e11bd815f9240387028a5e7ac7923d0f 486 SUPERFAMILY SSF56801 291 345 8.7E-5 T 23-04-2016 THIMO_RS05480 e11bd815f9240387028a5e7ac7923d0f 486 SUPERFAMILY SSF56801 60 263 8.7E-5 T 23-04-2016 THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 PANTHER PTHR10625 12 308 7.4E-85 T 23-04-2016 IPR000286 Histone deacetylase superfamily THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 Pfam PF00850 Histone deacetylase domain 20 305 1.1E-79 T 23-04-2016 IPR023801 Histone deacetylase domain THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 PANTHER PTHR10625:SF104 12 308 7.4E-85 T 23-04-2016 THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 Gene3D G3DSA:3.40.800.20 4 308 2.6E-98 T 23-04-2016 IPR023801 Histone deacetylase domain THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 PRINTS PR01270 Histone deacetylase superfamily signature 236 246 1.1E-17 T 23-04-2016 IPR000286 Histone deacetylase superfamily THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 PRINTS PR01270 Histone deacetylase superfamily signature 158 173 1.1E-17 T 23-04-2016 IPR000286 Histone deacetylase superfamily THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 PRINTS PR01270 Histone deacetylase superfamily signature 124 147 1.1E-17 T 23-04-2016 IPR000286 Histone deacetylase superfamily THIMO_RS08640 80f2defa0008d67da2fb264ad6ed42a4 310 SUPERFAMILY SSF52768 1 308 2.64E-97 T 23-04-2016 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 SUPERFAMILY SSF46955 1 108 4.03E-22 T 23-04-2016 IPR009061 Putative DNA-binding domain THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 SMART SM00422 1 69 2.8E-21 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.3E-6 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 1.3E-6 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.3E-6 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 Gene3D G3DSA:1.10.1660.10 1 114 1.2E-26 T 23-04-2016 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 PANTHER PTHR30204 1 116 1.5E-18 T 23-04-2016 THIMO_RS09010 c7087e7180d7d840255843451f0fc790 156 Pfam PF13411 MerR HTH family regulatory protein 1 61 1.3E-16 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS08725 152156a29b772955fdbb9dfcdda2f74c 172 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 146 1.2E-31 T 23-04-2016 IPR007359 Positive regulator of sigma(E), RseC/MucC THIMO_RS08725 152156a29b772955fdbb9dfcdda2f74c 172 PANTHER PTHR35867:SF1 2 159 3.6E-26 T 23-04-2016 THIMO_RS08725 152156a29b772955fdbb9dfcdda2f74c 172 PIRSF PIRSF004923 1 155 7.0E-31 T 23-04-2016 IPR026268 Protein RseC THIMO_RS08725 152156a29b772955fdbb9dfcdda2f74c 172 PANTHER PTHR35867 2 159 3.6E-26 T 23-04-2016 THIMO_RS12470 570696ca3d824be2c1dedb020b387cbf 139 Gene3D G3DSA:1.20.1260.10 1 138 1.6E-52 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS12470 570696ca3d824be2c1dedb020b387cbf 139 PANTHER PTHR33746:SF3 1 139 1.3E-55 T 23-04-2016 THIMO_RS12470 570696ca3d824be2c1dedb020b387cbf 139 Pfam PF02915 Rubrerythrin 10 133 6.5E-30 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 THIMO_RS12470 570696ca3d824be2c1dedb020b387cbf 139 PANTHER PTHR33746 1 139 1.3E-55 T 23-04-2016 THIMO_RS12470 570696ca3d824be2c1dedb020b387cbf 139 SUPERFAMILY SSF47240 3 138 1.12E-42 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS00745 837fb308eb2a60f060ddb8fb5e8e5ea6 413 PANTHER PTHR34856 6 336 1.4E-28 T 23-04-2016 THIMO_RS00745 837fb308eb2a60f060ddb8fb5e8e5ea6 413 PANTHER PTHR34856 357 402 1.4E-28 T 23-04-2016 THIMO_RS00745 837fb308eb2a60f060ddb8fb5e8e5ea6 413 Pfam PF03916 Polysulphide reductase, NrfD 43 335 5.3E-56 T 23-04-2016 IPR005614 NrfD family THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 SUPERFAMILY SSF116734 370 562 5.4E-31 T 23-04-2016 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 PANTHER PTHR30408:SF7 84 272 1.3E-15 T 23-04-2016 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 PANTHER PTHR30408:SF7 305 556 1.3E-15 T 23-04-2016 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 Pfam PF01420 Type I restriction modification DNA specificity domain 372 547 4.0E-14 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 PANTHER PTHR30408 84 272 1.3E-15 T 23-04-2016 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 PANTHER PTHR30408 305 556 1.3E-15 T 23-04-2016 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 SUPERFAMILY SSF116734 76 261 1.49E-22 T 23-04-2016 THIMO_RS09530 4460dae97eeaeee5e80e74c3a0b646c8 578 SUPERFAMILY SSF116734 308 332 1.49E-22 T 23-04-2016 THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 PANTHER PTHR11603 1 353 2.1E-145 T 23-04-2016 THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 PIRSF PIRSF002849 10 353 6.5E-125 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 Gene3D G3DSA:1.10.8.300 235 349 3.2E-39 T 23-04-2016 THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 SUPERFAMILY SSF52540 39 326 1.15E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 Gene3D G3DSA:3.40.50.300 51 215 8.6E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 PANTHER PTHR11603:SF148 1 353 2.1E-145 T 23-04-2016 THIMO_RS13960 8ed826ac87e10f07a385eb622595da01 353 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 69 199 9.0E-63 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 154 169 4.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 210 227 4.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 172 198 4.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 SUPERFAMILY SSF55831 1 279 1.23E-113 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 86 1.2E-34 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 85 279 6.0E-84 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 Gene3D G3DSA:3.30.572.10 1 279 1.2E-117 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 PANTHER PTHR11548 1 279 7.9E-167 T 23-04-2016 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 Pfam PF00303 Thymidylate synthase 2 279 4.2E-109 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS16065 1fccfd544a1a84f2fca06a3f572b87bb 279 Hamap MF_00008 Thymidylate synthase [thyA]. 1 279 42.786 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 SUPERFAMILY SSF52540 8 218 3.3E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 Gene3D G3DSA:3.40.50.300 16 218 3.8E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 PANTHER PTHR24220:SF509 4 218 2.6E-91 T 23-04-2016 THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 SMART SM00382 31 217 2.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 Pfam PF00005 ABC transporter 22 168 2.0E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS07465 8bd06c45bf7c43a017c277dd49ee4f99 222 PANTHER PTHR24220 4 218 2.6E-91 T 23-04-2016 THIMO_RS16670 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 SUPERFAMILY SSF52317 8 226 1.6E-38 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS16670 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 PANTHER PTHR11922 51 226 3.4E-42 T 23-04-2016 THIMO_RS16670 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 Pfam PF07722 Peptidase C26 49 204 1.9E-48 T 23-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 THIMO_RS16670 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 Gene3D G3DSA:3.40.50.880 50 226 4.3E-37 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS16670 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 PANTHER PTHR11922:SF18 51 226 3.4E-42 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82714 194 275 2.49E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.70.1430 592 700 3.3E-12 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 587 701 8.37E-13 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 150 191 4.45E-8 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 295 345 4.45E-8 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PANTHER PTHR32063:SF16 9 1067 0.0 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:1.20.1640.10 308 520 9.8E-41 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 45 63 9.4E-26 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 487 510 9.4E-26 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 17 41 9.4E-26 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 354 377 9.4E-26 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 9.4E-26 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 408 432 9.4E-26 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Pfam PF00873 AcrB/AcrD/AcrF family 20 1061 2.5E-155 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 PANTHER PTHR32063 9 1067 0.0 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.2090.10 750 836 7.7E-9 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.2090.10 194 274 1.8E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 47 141 3.84E-19 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82714 751 835 1.14E-9 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82866 313 510 1.01E-34 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:1.10.3850.10 842 1066 2.1E-70 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.70.1430 48 149 7.5E-18 T 23-04-2016 THIMO_RS09840 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82866 845 1067 9.42E-41 T 23-04-2016 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 ProSitePatterns PS00622 LuxR-type HTH domain signature. 157 184 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 197 2.9E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 SMART SM00421 140 197 9.7E-24 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 SUPERFAMILY SSF52172 7 153 2.13E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 PANTHER PTHR26402 5 204 4.4E-77 T 23-04-2016 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 Gene3D G3DSA:1.10.10.10 142 198 7.3E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 SMART SM00448 5 116 7.3E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 Gene3D G3DSA:3.40.50.2300 7 141 2.4E-37 T 23-04-2016 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 SUPERFAMILY SSF46894 130 198 6.8E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 2.3E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 2.3E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 2.3E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 Pfam PF00072 Response regulator receiver domain 7 116 1.9E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11100 722d6e337a79996168aee791c71e4ced 205 PANTHER PTHR26402:SF546 5 204 4.4E-77 T 23-04-2016 THIMO_RS00565 58186b2a1ac516435cc57d70b6989562 195 Gene3D G3DSA:3.90.1570.10 1 130 1.7E-17 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS00565 58186b2a1ac516435cc57d70b6989562 195 SUPERFAMILY SSF52980 2 134 2.04E-18 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS00565 58186b2a1ac516435cc57d70b6989562 195 Pfam PF05685 Putative restriction endonuclease 11 133 4.6E-20 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS00565 58186b2a1ac516435cc57d70b6989562 195 PANTHER PTHR36558:SF1 1 133 1.0E-35 T 23-04-2016 THIMO_RS00565 58186b2a1ac516435cc57d70b6989562 195 PANTHER PTHR36558 1 133 1.0E-35 T 23-04-2016 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 PANTHER PTHR19136 13 273 1.6E-123 T 23-04-2016 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 SUPERFAMILY SSF51161 2 256 7.18E-72 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 5 69 3.9E-24 T 23-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 PANTHER PTHR19136:SF52 13 273 1.6E-123 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 Gene3D G3DSA:1.10.166.10 1 69 3.1E-29 T 23-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 Gene3D G3DSA:2.160.10.10 89 254 1.9E-59 T 23-04-2016 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.001 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 5 273 9.3E-143 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 55.73 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 THIMO_RS05765 c08d05846e6bddd118b17b63678ef485 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 1.6E-13 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 SUPERFAMILY SSF141868 951 1195 1.22E-58 T 23-04-2016 IPR001633 EAL domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 SMART SM00052 944 1192 1.6E-56 T 23-04-2016 IPR001633 EAL domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF00563 EAL domain 951 1187 5.4E-48 T 23-04-2016 IPR001633 EAL domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 SMART SM00267 761 932 2.1E-31 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 SUPERFAMILY SSF55073 778 934 8.63E-33 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 774 931 1.2E-21 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 Gene3D G3DSA:3.30.70.270 777 935 2.8E-36 T 23-04-2016 THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 SUPERFAMILY SSF141371 22 113 4.71E-7 T 23-04-2016 THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF07793 Protein of unknown function (DUF1631) 418 763 5.9E-32 T 23-04-2016 IPR012434 Protein of unknown function DUF1631 THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF07793 Protein of unknown function (DUF1631) 214 410 9.9E-16 T 23-04-2016 IPR012434 Protein of unknown function DUF1631 THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 PANTHER PTHR33121 913 1193 3.3E-49 T 23-04-2016 THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 Gene3D G3DSA:3.20.20.450 947 1195 7.9E-62 T 23-04-2016 IPR001633 EAL domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF00990 Diguanylate cyclase, GGDEF domain 777 927 1.7E-23 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS09650 4b44dfabb9f6b5345327e8728926b072 1205 PANTHER PTHR33121:SF10 913 1193 3.3E-49 T 23-04-2016 THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 SUPERFAMILY SSF117143 92 222 6.02E-36 T 23-04-2016 THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 PANTHER PTHR30435 1 261 1.6E-129 T 23-04-2016 THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 258 2.2E-25 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 1.1E-116 T 23-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 2.6E-46 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 3.1E-34 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 Pfam PF00460 Flagella basal body rod protein 5 35 6.9E-12 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 THIMO_RS16635 6da748ef950eac8c0ec8fb0beabaf597 261 PANTHER PTHR30435:SF19 1 261 1.6E-129 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.40.47.10 305 462 2.7E-47 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.40.366.10 596 653 1.3E-27 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.40.366.10 720 833 1.3E-27 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 9 292 3.0E-60 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.40.47.10 11 304 3.3E-68 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 558 828 4.8E-10 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF00698 Acyl transferase domain 593 814 1.7E-15 T 23-04-2016 IPR014043 Acyl transferase THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SMART SM00825 Beta-ketoacyl synthase 11 466 8.5E-100 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF56214 1250 1339 1.7E-9 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF53901 188 411 5.46E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF53901 442 460 5.46E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF53901 5 128 5.46E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1345 1406 3.6E-10 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 PANTHER PTHR11712 11 139 6.0E-159 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 PANTHER PTHR11712 940 1290 6.0E-159 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 PANTHER PTHR11712 175 890 6.0E-159 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF52151 722 823 3.92E-30 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF52151 554 659 3.92E-30 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.90.470.20 1345 1411 2.7E-11 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF14765 Polyketide synthase dehydratase 990 1215 7.7E-11 T 23-04-2016 IPR020807 Polyketide synthase, dehydratase domain THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF56214 1344 1414 3.31E-14 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.90.470.20 1252 1339 1.0E-9 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 300 415 2.8E-34 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 PANTHER PTHR11712:SF285 11 139 6.0E-159 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 PANTHER PTHR11712:SF285 940 1290 6.0E-159 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 PANTHER PTHR11712:SF285 175 890 6.0E-159 T 23-04-2016 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 1252 1339 1.0E-5 T 23-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS06880 d2355b2bfb3ff6b2fffe3dcff532464c 1460 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 205 221 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 SUPERFAMILY SSF53686 5 355 9.56E-106 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 23-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 Gene3D G3DSA:3.40.1020.10 333 502 5.9E-56 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 PANTHER PTHR10314 1 358 2.1E-204 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 Gene3D G3DSA:3.40.50.1100 27 103 9.6E-6 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 SUPERFAMILY SSF55021 410 502 2.58E-27 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 419 502 8.7E-25 T 23-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 409 2.4E-25 T 23-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 SUPERFAMILY SSF55021 327 413 4.27E-27 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 PANTHER PTHR10314:SF30 1 358 2.1E-204 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 Gene3D G3DSA:3.40.50.1100 104 332 2.0E-78 T 23-04-2016 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 502 4.1E-242 T 23-04-2016 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 THIMO_RS05685 49e187817f172e23ed5265f6f2a1665a 513 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 303 1.6E-82 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 Gene3D G3DSA:3.40.50.720 2 181 3.3E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 Pfam PF02153 Prephenate dehydrogenase 17 273 4.6E-76 T 23-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 PANTHER PTHR21363 1 286 1.9E-74 T 23-04-2016 THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 PANTHER PTHR21363:SF0 1 286 1.9E-74 T 23-04-2016 THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 SUPERFAMILY SSF51735 4 171 5.51E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 Gene3D G3DSA:1.10.3660.10 222 279 2.8E-4 T 23-04-2016 THIMO_RS06245 e596067ce7d881fb6fd9076906872d96 290 SUPERFAMILY SSF48179 177 283 4.08E-35 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 Gene3D G3DSA:1.10.287.40 1 104 9.3E-26 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 SUPERFAMILY SSF46589 1 112 8.89E-29 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PIRSF PIRSF001529 1 424 2.0E-174 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 1.8E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 1.8E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 1.8E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 1.8E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 1.8E-33 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 40.978 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 SUPERFAMILY SSF55681 116 418 1.66E-99 T 23-04-2016 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 1.2E-166 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.9E-28 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 PANTHER PTHR11778 1 423 8.0E-208 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 Gene3D G3DSA:3.30.930.10 105 421 4.0E-141 T 23-04-2016 THIMO_RS11130 1a12194f2d9a6e26f7c4443785b62425 424 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 219 400 2.7E-33 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 Gene3D G3DSA:3.40.50.80 97 246 3.2E-42 T 23-04-2016 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 PANTHER PTHR19370 1 235 5.9E-64 T 23-04-2016 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 9.6E-14 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 SUPERFAMILY SSF63380 3 95 9.5E-22 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 SUPERFAMILY SSF52343 104 245 4.32E-32 T 23-04-2016 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 Pfam PF00970 Oxidoreductase FAD-binding domain 27 89 1.4E-4 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 Gene3D G3DSA:2.40.30.10 3 92 4.1E-23 T 23-04-2016 THIMO_RS00595 1e1ab7d841f955a7c143683b9917b02e 247 PANTHER PTHR19370:SF98 1 235 5.9E-64 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Pfam PF00512 His Kinase A (phospho-acceptor) domain 498 565 3.0E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SMART SM00304 308 361 4.4E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SUPERFAMILY SSF47384 493 566 3.34E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Pfam PF08448 PAS fold 383 488 3.7E-5 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Pfam PF00672 HAMP domain 289 356 3.2E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SUPERFAMILY SSF55874 558 721 1.01E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SMART SM00387 609 720 2.0E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SMART SM00388 497 569 3.3E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 670 680 1.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 681 699 1.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 666 1.6E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Gene3D G3DSA:1.10.287.130 493 565 3.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PANTHER PTHR24423 373 701 1.8E-64 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PANTHER PTHR24423 10 15 1.8E-64 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 609 717 1.1E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PANTHER PTHR24423:SF471 373 701 1.8E-64 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PANTHER PTHR24423:SF471 10 15 1.8E-64 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Gene3D G3DSA:3.30.565.10 569 717 3.0E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SUPERFAMILY SSF158472 310 358 4.32E-8 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 SUPERFAMILY SSF55785 365 487 2.66E-12 T 23-04-2016 IPR000014 PAS domain THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 Gene3D G3DSA:3.30.450.20 370 487 3.4E-14 T 23-04-2016 THIMO_RS05940 f2325d568012e1e65bd542a18e0cc15f 729 PIRSF PIRSF037532 3 724 9.4E-207 T 23-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 SUPERFAMILY SSF51998 5 203 6.71E-153 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 SUPERFAMILY SSF51998 248 406 6.71E-153 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 SUPERFAMILY SSF51998 441 595 6.71E-153 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PANTHER PTHR11573 1 594 6.3E-181 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 Pfam PF02867 Ribonucleotide reductase, barrel domain 79 580 2.0E-130 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PANTHER PTHR11573:SF3 1 594 6.3E-181 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 161 180 1.7E-25 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 358 380 1.7E-25 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 386 409 1.7E-25 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 441 468 1.7E-25 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 320 343 1.7E-25 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 Gene3D G3DSA:3.20.70.20 441 488 2.4E-120 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 Gene3D G3DSA:3.20.70.20 540 583 2.4E-120 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 Gene3D G3DSA:3.20.70.20 248 406 2.4E-120 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 Gene3D G3DSA:3.20.70.20 8 203 2.4E-120 T 23-04-2016 THIMO_RS10360 a601a53bbf9883657c5fa7660dfdcb0a 954 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 22 584 1.1E-170 T 23-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 SUPERFAMILY SSF52922 189 324 1.18E-43 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 Pfam PF02780 Transketolase, C-terminal domain 195 317 4.7E-43 T 23-04-2016 IPR033248 Transketolase, C-terminal domain THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 PANTHER PTHR11624 1 324 2.0E-134 T 23-04-2016 IPR033247 Transketolase family THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 Gene3D G3DSA:3.40.50.970 2 197 3.2E-74 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 SMART SM00861 4 181 8.0E-50 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 SUPERFAMILY SSF52518 1 205 5.4E-60 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 Gene3D G3DSA:3.40.50.920 199 323 7.1E-48 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS08105 b20bd947696ddd7249bd315d09bcc5cd 325 Pfam PF02779 Transketolase, pyrimidine binding domain 4 179 8.7E-39 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 Pfam PF13180 PDZ domain 217 289 6.1E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 453 2.3E-111 T 23-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 Gene3D G3DSA:2.30.42.10 96 186 4.9E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 Gene3D G3DSA:2.30.42.10 212 291 1.0E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 Pfam PF02163 Peptidase family M50 11 440 1.1E-76 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 PANTHER PTHR22939:SF78 71 92 2.1E-71 T 23-04-2016 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 PANTHER PTHR22939:SF78 221 454 2.1E-71 T 23-04-2016 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 SUPERFAMILY SSF50156 223 290 6.7E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 PANTHER PTHR22939 71 92 2.1E-71 T 23-04-2016 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 PANTHER PTHR22939 221 454 2.1E-71 T 23-04-2016 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 SUPERFAMILY SSF50156 88 186 6.97E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 SMART SM00228 116 188 4.4E-4 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS03480 9b85348d30aad00c35ed89f74cb3606a 454 SMART SM00228 212 281 3.4E-5 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 Gene3D G3DSA:3.30.420.10 135 295 1.1E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 Pfam PF13565 Homeodomain-like domain 35 112 3.6E-11 T 23-04-2016 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 Pfam PF00665 Integrase core domain 139 254 3.8E-17 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 SUPERFAMILY SSF53098 141 305 3.03E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 Gene3D G3DSA:1.10.10.60 9 70 9.4E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS00100 fff336a7f3fab61b0cf9850f0eb7daac 357 PANTHER PTHR32552 4 300 3.9E-19 T 23-04-2016 THIMO_RS15675 69edde2870bbceb660b15551a6b489e2 60 SUPERFAMILY SSF52172 3 36 2.56E-5 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS15675 69edde2870bbceb660b15551a6b489e2 60 Gene3D G3DSA:3.40.50.2300 2 36 1.2E-5 T 23-04-2016 THIMO_RS15115 5836b9861a206b729ca5afe8623fdbf4 221 PANTHER PTHR30183 11 221 6.7E-51 T 23-04-2016 THIMO_RS15115 5836b9861a206b729ca5afe8623fdbf4 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 191 1.6E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS15115 5836b9861a206b729ca5afe8623fdbf4 221 Gene3D G3DSA:1.10.3720.10 11 219 5.7E-38 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS15115 5836b9861a206b729ca5afe8623fdbf4 221 SUPERFAMILY SSF161098 10 219 1.02E-44 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09725 98e7f420fd28994e644c8de3329e0198 67 PANTHER PTHR30298 1 67 8.3E-15 T 23-04-2016 THIMO_RS09725 98e7f420fd28994e644c8de3329e0198 67 Pfam PF01609 Transposase DDE domain 1 64 9.7E-6 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 8 186 3.4E-55 T 23-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PANTHER PTHR23429 1 487 1.6E-207 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 SUPERFAMILY SSF55347 176 485 5.89E-109 T 23-04-2016 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PIRSF PIRSF000110 1 488 2.0E-170 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 Gene3D G3DSA:3.30.360.10 186 485 1.3E-116 T 23-04-2016 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 485 4.4E-110 T 23-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 6.2E-45 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 6.2E-45 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 6.2E-45 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 6.2E-45 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 6.2E-45 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 4 486 1.1E-172 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 4 486 77.656 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 Gene3D G3DSA:3.40.50.720 3 185 4.6E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 SUPERFAMILY SSF51735 2 189 2.76E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS16725 b549c06af67201f27a7d20cb9799d8ca 490 PANTHER PTHR23429:SF0 1 487 1.6E-207 T 23-04-2016 THIMO_RS18440 1ecbbf88a0e02417af5f71437adde4ef 134 SUPERFAMILY SSF53335 3 92 1.18E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18440 1ecbbf88a0e02417af5f71437adde4ef 134 Gene3D G3DSA:3.40.50.150 4 86 1.7E-9 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18440 1ecbbf88a0e02417af5f71437adde4ef 134 Pfam PF13489 Methyltransferase domain 21 78 4.1E-8 T 23-04-2016 THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 Gene3D G3DSA:1.25.40.10 176 225 1.0E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 Gene3D G3DSA:1.25.40.10 54 146 5.6E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 SMART SM00671 181 217 6.5E-6 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 SMART SM00671 65 101 1.9E-5 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 SMART SM00671 102 137 3.8E-4 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 SUPERFAMILY SSF81901 54 145 1.57E-15 T 23-04-2016 THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 PANTHER PTHR11102 177 226 4.7E-23 T 23-04-2016 THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 PANTHER PTHR11102 54 159 4.7E-23 T 23-04-2016 THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 Pfam PF08238 Sel1 repeat 181 217 7.5E-5 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 Pfam PF08238 Sel1 repeat 67 101 3.3E-5 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 Pfam PF08238 Sel1 repeat 102 137 2.2E-4 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03930 a47ba4ee9a90fd34745dbf57878c826f 234 SUPERFAMILY SSF81901 175 225 2.22E-6 T 23-04-2016 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 SUPERFAMILY SSF46548 342 451 4.36E-20 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 PANTHER PTHR11780:SF1 9 490 4.5E-211 T 23-04-2016 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 PANTHER PTHR11780 9 490 4.5E-211 T 23-04-2016 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 527 188.018 T 23-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 385 396 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 16 453 1.8E-181 T 23-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 Pfam PF10531 SLBB domain 304 352 4.5E-13 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 SUPERFAMILY SSF142019 99 311 3.14E-62 T 23-04-2016 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 Pfam PF13375 RnfC Barrel sandwich hybrid domain 17 119 1.3E-40 T 23-04-2016 IPR026902 RnfC Barrel sandwich hybrid domain THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 144 291 3.9E-52 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 Pfam PF13237 4Fe-4S dicluster domain 384 435 7.1E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 Gene3D G3DSA:1.10.1060.10 374 458 1.9E-16 T 23-04-2016 THIMO_RS04590 28687f15f50e1d7c7c63adbbd1146220 527 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 424 435 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 SMART SM00382 189 328 1.6E-26 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 PANTHER PTHR23076 5 607 0.0 T 23-04-2016 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 SUPERFAMILY SSF140990 407 607 4.84E-75 T 23-04-2016 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 Pfam PF06480 FtsH Extracellular 8 92 2.9E-9 T 23-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 598 5.3E-238 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 Gene3D G3DSA:1.10.8.60 338 409 2.1E-27 T 23-04-2016 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 Gene3D G3DSA:3.40.50.300 153 337 1.1E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 Pfam PF01434 Peptidase family M41 386 597 3.1E-83 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 SUPERFAMILY SSF52540 152 396 2.32E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 193 325 2.0E-44 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 613 37.734 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 THIMO_RS14480 e882a7ce38d3d265c28d23d8c65d7802 645 ProSitePatterns PS00674 AAA-protein family signature. 296 314 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 Pfam PF03459 TOBE domain 292 358 2.0E-14 T 23-04-2016 IPR005116 Transport-associated OB, type 1 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 Pfam PF00005 ABC transporter 19 161 1.3E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 6 358 2.0E-134 T 23-04-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 PANTHER PTHR24220 2 298 3.4E-96 T 23-04-2016 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 Gene3D G3DSA:2.40.50.100 279 356 8.9E-18 T 23-04-2016 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 SMART SM00382 25 211 5.3E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 PANTHER PTHR24220:SF284 2 298 3.4E-96 T 23-04-2016 THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 SUPERFAMILY SSF52540 15 224 1.09E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 SUPERFAMILY SSF50331 239 358 2.43E-23 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal THIMO_RS02950 1e1ad77858775a972f7176afa856ec66 360 Gene3D G3DSA:3.40.50.300 9 226 1.5E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 SUPERFAMILY SSF51735 5 255 3.97E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PANTHER PTHR24322:SF317 11 144 4.6E-56 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PANTHER PTHR24322:SF317 160 192 4.6E-56 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 Gene3D G3DSA:3.40.50.720 2 254 8.0E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 4.2E-84 T 23-04-2016 THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PANTHER PTHR24322 11 144 4.6E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PANTHER PTHR24322 160 192 4.6E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PIRSF PIRSF000094 1 258 1.7E-112 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 57 2.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS02065 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 Gene3D G3DSA:1.20.5.890 1 42 2.8E-15 T 23-04-2016 THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 1.8E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 3.6E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 3.6E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 3.6E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14220 b502ff5ea5455297550162b5d67cb616 64 SUPERFAMILY SSF56918 1 46 2.88E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 TIGRFAM TIGR00033 aroC: chorismate synthase 11 350 8.5E-136 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 Gene3D G3DSA:3.60.150.10 9 352 2.7E-152 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 PIRSF PIRSF001456 3 360 5.0E-136 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 SUPERFAMILY SSF103263 4 352 2.35E-143 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 Pfam PF01264 Chorismate synthase 10 345 1.2E-135 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.334 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 PANTHER PTHR21085 2 351 1.3E-209 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS05250 aa0be7d89313ec7952c1f55219d33b8d 367 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS08995 9121b022e8ddcc0ddfdcb954a626929d 114 PANTHER PTHR11954 2 114 2.5E-38 T 23-04-2016 IPR001398 Macrophage migration inhibitory factor THIMO_RS08995 9121b022e8ddcc0ddfdcb954a626929d 114 SUPERFAMILY SSF55331 1 114 1.12E-31 T 23-04-2016 IPR014347 Tautomerase/MIF superfamily THIMO_RS08995 9121b022e8ddcc0ddfdcb954a626929d 114 Gene3D G3DSA:3.30.429.10 2 114 4.2E-35 T 23-04-2016 THIMO_RS08995 9121b022e8ddcc0ddfdcb954a626929d 114 Pfam PF01187 Macrophage migration inhibitory factor (MIF) 2 114 7.9E-23 T 23-04-2016 IPR001398 Macrophage migration inhibitory factor THIMO_RS08995 9121b022e8ddcc0ddfdcb954a626929d 114 ProDom PD004816 MACROPHAGE MIGRATION INHIBITORY FACTOR TAUTOMERASE MIF PHENYLPYRUVATE CYTOKINE RESPONSE INFLAMMATORY 20 114 7.0E-22 T 23-04-2016 IPR001398 Macrophage migration inhibitory factor THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 Pfam PF00534 Glycosyl transferases group 1 216 397 9.3E-11 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 SUPERFAMILY SSF53756 2 422 7.96E-52 T 23-04-2016 THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 PANTHER PTHR12526 272 423 3.3E-38 T 23-04-2016 THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 PANTHER PTHR12526 1 43 3.3E-38 T 23-04-2016 THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 PANTHER PTHR12526 67 254 3.3E-38 T 23-04-2016 THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 Gene3D G3DSA:3.40.50.2000 189 399 7.5E-10 T 23-04-2016 THIMO_RS04875 3e73323b791cd80f11aba68acb47ace9 423 Pfam PF13579 Glycosyl transferase 4-like domain 22 200 3.4E-19 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS15985 17d2f04fedf7ceb0811d02ca89e12653 149 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 18 128 6.8E-29 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15985 17d2f04fedf7ceb0811d02ca89e12653 149 Gene3D G3DSA:3.40.50.700 6 135 2.5E-36 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15985 17d2f04fedf7ceb0811d02ca89e12653 149 PANTHER PTHR11995:SF3 4 148 4.0E-57 T 23-04-2016 THIMO_RS15985 17d2f04fedf7ceb0811d02ca89e12653 149 PANTHER PTHR11995 4 148 4.0E-57 T 23-04-2016 THIMO_RS15985 17d2f04fedf7ceb0811d02ca89e12653 149 SUPERFAMILY SSF56770 6 137 8.24E-53 T 23-04-2016 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Pfam PF04963 Sigma-54 factor, core binding domain 127 317 1.5E-55 T 23-04-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 488 7.0E-148 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 49 6.1E-15 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Pfam PF04552 Sigma-54, DNA binding domain 333 489 7.1E-69 T 23-04-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PIRSF PIRSF000774 1 491 3.6E-152 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 378 397 - T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 469 476 - T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 390 402 8.5E-32 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 406 417 8.5E-32 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 464 482 8.5E-32 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 200 217 8.5E-32 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PANTHER PTHR32248:SF4 1 491 3.4E-155 T 23-04-2016 THIMO_RS13165 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PANTHER PTHR32248 1 491 3.4E-155 T 23-04-2016 THIMO_RS01215 d348525fb93827dec4f7d9f88e440245 190 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 11 173 4.7E-27 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 THIMO_RS01215 d348525fb93827dec4f7d9f88e440245 190 Gene3D G3DSA:3.40.920.10 1 174 8.0E-38 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 THIMO_RS01215 d348525fb93827dec4f7d9f88e440245 190 PANTHER PTHR32154:SF9 1 178 4.3E-40 T 23-04-2016 THIMO_RS01215 d348525fb93827dec4f7d9f88e440245 190 PANTHER PTHR32154 1 178 4.3E-40 T 23-04-2016 THIMO_RS01215 d348525fb93827dec4f7d9f88e440245 190 SUPERFAMILY SSF53323 1 177 1.83E-40 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 THIMO_RS15410 7c01b8503e7297a52ff88491868d90ef 235 PANTHER PTHR33937:SF1 103 234 7.8E-31 T 23-04-2016 THIMO_RS15410 7c01b8503e7297a52ff88491868d90ef 235 SUPERFAMILY SSF53146 101 217 7.06E-32 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15410 7c01b8503e7297a52ff88491868d90ef 235 Gene3D G3DSA:3.30.420.130 101 218 3.5E-36 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15410 7c01b8503e7297a52ff88491868d90ef 235 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 112 202 1.6E-16 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15410 7c01b8503e7297a52ff88491868d90ef 235 Pfam PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal 6 89 3.3E-24 T 23-04-2016 IPR031763 Dinitrogenase iron-molybdenum cofactor, N-terminal THIMO_RS15410 7c01b8503e7297a52ff88491868d90ef 235 PANTHER PTHR33937 103 234 7.8E-31 T 23-04-2016 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 Gene3D G3DSA:1.10.287.130 357 411 3.3E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 SMART SM00387 465 576 6.8E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 PANTHER PTHR24423 4 11 1.4E-52 T 23-04-2016 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 PANTHER PTHR24423 289 572 1.4E-52 T 23-04-2016 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 Gene3D G3DSA:3.30.565.10 412 574 3.4E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 Pfam PF00672 HAMP domain 276 344 3.3E-17 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 SMART SM00388 360 425 9.6E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 SMART SM00304 295 347 7.5E-16 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 570 8.7E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 SUPERFAMILY SSF47384 345 425 1.0E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 531 3.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 517 3.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 550 3.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 560 573 3.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 SUPERFAMILY SSF55874 416 572 1.28E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 Pfam PF00512 His Kinase A (phospho-acceptor) domain 361 424 7.6E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS03935 6074ef8391e101027fd6ec00903c34a5 582 SUPERFAMILY SSF158472 295 344 2.09E-11 T 23-04-2016 THIMO_RS08905 91ae314b095d875ac71366bc815417f8 175 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 12 171 4.1E-46 T 23-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 THIMO_RS08905 91ae314b095d875ac71366bc815417f8 175 Gene3D G3DSA:3.40.50.880 4 173 9.2E-47 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS08905 91ae314b095d875ac71366bc815417f8 175 Pfam PF01965 DJ-1/PfpI family 11 169 1.1E-45 T 23-04-2016 IPR002818 DJ-1/PfpI THIMO_RS08905 91ae314b095d875ac71366bc815417f8 175 SUPERFAMILY SSF52317 7 172 4.09E-44 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS08905 91ae314b095d875ac71366bc815417f8 175 PANTHER PTHR11019:SF135 5 172 7.8E-53 T 23-04-2016 THIMO_RS08905 91ae314b095d875ac71366bc815417f8 175 PANTHER PTHR11019 5 172 7.8E-53 T 23-04-2016 THIMO_RS07420 a5d11de36d36084f7e11ac91bf7e388f 259 Gene3D G3DSA:3.60.10.10 14 179 1.3E-8 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS07420 a5d11de36d36084f7e11ac91bf7e388f 259 PANTHER PTHR15822:SF7 10 254 2.7E-18 T 23-04-2016 THIMO_RS07420 a5d11de36d36084f7e11ac91bf7e388f 259 SUPERFAMILY SSF56219 12 250 1.92E-34 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS07420 a5d11de36d36084f7e11ac91bf7e388f 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 17 241 2.5E-18 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS07420 a5d11de36d36084f7e11ac91bf7e388f 259 PANTHER PTHR15822 10 254 2.7E-18 T 23-04-2016 THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 SMART SM00479 19 204 1.0E-23 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 Pfam PF00929 Exonuclease 21 195 6.4E-29 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 SUPERFAMILY SSF53098 13 205 9.02E-53 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 Gene3D G3DSA:3.30.420.10 14 206 1.2E-52 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 TIGRFAM TIGR01298 RNaseT: ribonuclease T 12 205 2.6E-91 T 23-04-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 Hamap MF_00157 Ribonuclease T [rnt]. 1 216 90.362 T 23-04-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 PANTHER PTHR30231:SF2 11 205 7.1E-96 T 23-04-2016 THIMO_RS15865 63cf9f1871b94b56d82128bff81a1d02 216 PANTHER PTHR30231 11 205 7.1E-96 T 23-04-2016 THIMO_RS05400 4db57f51c8211c51d83e8628d1aab2f0 286 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 212 2.3E-14 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 THIMO_RS05400 4db57f51c8211c51d83e8628d1aab2f0 286 Gene3D G3DSA:3.40.50.1000 173 268 2.1E-26 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05400 4db57f51c8211c51d83e8628d1aab2f0 286 Gene3D G3DSA:3.40.50.1000 3 84 2.1E-26 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05400 4db57f51c8211c51d83e8628d1aab2f0 286 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 2 268 5.6E-45 T 23-04-2016 IPR006380 Sucrose-phosphatase, N-terminal THIMO_RS05400 4db57f51c8211c51d83e8628d1aab2f0 286 SUPERFAMILY SSF56784 2 230 2.16E-23 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05400 4db57f51c8211c51d83e8628d1aab2f0 286 Gene3D G3DSA:3.90.1070.10 100 172 7.2E-15 T 23-04-2016 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 PANTHER PTHR10357 504 565 1.8E-111 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 PANTHER PTHR10357 3 476 1.8E-111 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 Pfam PF11941 Domain of unknown function (DUF3459) 508 604 8.5E-15 T 23-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 SMART SM00642 114 461 9.5E-9 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 PANTHER PTHR10357:SF110 504 565 1.8E-111 T 23-04-2016 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 PANTHER PTHR10357:SF110 3 476 1.8E-111 T 23-04-2016 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 Gene3D G3DSA:2.60.40.10 5 92 2.4E-27 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 PIRSF PIRSF006337 1 600 1.7E-218 T 23-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 SUPERFAMILY SSF81296 2 92 5.42E-19 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 SUPERFAMILY SSF51445 89 518 1.47E-103 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 2 68 3.5E-9 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 Gene3D G3DSA:3.20.20.80 106 443 2.5E-75 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 Gene3D G3DSA:3.20.20.80 490 518 2.5E-75 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 14 565 9.0E-208 T 23-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 THIMO_RS11195 f0c0538845a12b55d4f3d71fbb7b4ae6 619 Pfam PF00128 Alpha amylase, catalytic domain 124 212 1.0E-15 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 13 286 2.5E-92 T 23-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 PANTHER PTHR10992 183 290 3.8E-40 T 23-04-2016 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 PANTHER PTHR10992 20 152 3.8E-40 T 23-04-2016 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 PRINTS PR00412 Epoxide hydrolase signature 45 63 6.7E-6 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 PRINTS PR00412 Epoxide hydrolase signature 109 122 6.7E-6 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 PRINTS PR00412 Epoxide hydrolase signature 265 287 6.7E-6 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 SUPERFAMILY SSF53474 14 286 5.08E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 Gene3D G3DSA:3.40.50.1820 15 286 7.6E-52 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS14335 677c4d0fc2daa9cb0694493cce2e9cfe 299 Pfam PF12697 Alpha/beta hydrolase family 41 282 1.6E-22 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS09315 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 243 271 3.5E-4 T 23-04-2016 IPR001646 Pentapeptide repeat THIMO_RS09315 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 152 188 5.5E-8 T 23-04-2016 IPR001646 Pentapeptide repeat THIMO_RS09315 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 95 134 1.8E-10 T 23-04-2016 IPR001646 Pentapeptide repeat THIMO_RS09315 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 54 86 1.5E-9 T 23-04-2016 IPR001646 Pentapeptide repeat THIMO_RS09315 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 201 235 4.5E-8 T 23-04-2016 IPR001646 Pentapeptide repeat THIMO_RS09315 f395558857fdc5915672b3578297e616 284 PANTHER PTHR14136 14 252 7.1E-39 T 23-04-2016 THIMO_RS09315 f395558857fdc5915672b3578297e616 284 SUPERFAMILY SSF141571 201 270 1.44E-15 T 23-04-2016 THIMO_RS09315 f395558857fdc5915672b3578297e616 284 SUPERFAMILY SSF141571 18 132 9.16E-26 T 23-04-2016 THIMO_RS09315 f395558857fdc5915672b3578297e616 284 PANTHER PTHR14136:SF0 14 252 7.1E-39 T 23-04-2016 THIMO_RS17270 46a90cf565a779aa48317f920dfafb95 270 Pfam PF01569 PAP2 superfamily 122 243 4.4E-18 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS17270 46a90cf565a779aa48317f920dfafb95 270 SMART SM00014 119 239 5.4E-8 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS17270 46a90cf565a779aa48317f920dfafb95 270 SUPERFAMILY SSF48317 40 247 6.28E-21 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS17270 46a90cf565a779aa48317f920dfafb95 270 Gene3D G3DSA:1.20.144.10 92 245 2.2E-17 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 SMART SM00387 347 456 4.6E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 302 7.3E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 SMART SM00304 182 235 2.7E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 SMART SM00388 236 302 1.6E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 1.1E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 1.1E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 412 1.1E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 SUPERFAMILY SSF47384 219 303 8.83E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 453 1.4E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 SUPERFAMILY SSF158472 182 233 9.29E-8 T 23-04-2016 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 SUPERFAMILY SSF55874 291 454 1.14E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 Gene3D G3DSA:1.10.287.130 226 298 6.0E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 Pfam PF00672 HAMP domain 163 231 1.3E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 PANTHER PTHR24423 176 453 6.9E-74 T 23-04-2016 THIMO_RS16900 9c5bad9811b880be58e9eba9c2241d2e 468 Gene3D G3DSA:3.30.565.10 310 454 1.2E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Gene3D G3DSA:3.30.450.40 22 190 2.5E-24 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Pfam PF13185 GAF domain 38 176 9.5E-12 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 PANTHER PTHR32071 157 528 1.3E-154 T 23-04-2016 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Gene3D G3DSA:3.40.50.300 206 381 1.1E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Pfam PF02954 Bacterial regulatory protein, Fis family 485 519 7.4E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 SUPERFAMILY SSF55781 22 176 7.85E-20 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 SUPERFAMILY SSF52540 208 449 1.64E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Pfam PF00158 Sigma-54 interaction domain 209 375 9.7E-74 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 233 246 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Gene3D G3DSA:1.10.10.60 485 519 1.9E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 22 528 3.9E-212 T 23-04-2016 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 295 310 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 SMART SM00065 39 186 2.2E-23 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 SMART SM00382 229 372 1.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 Gene3D G3DSA:1.10.8.60 382 449 1.1E-22 T 23-04-2016 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 504 524 8.2E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 487 504 8.2E-8 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS06090 0310d2ca7bf389596ca3578444d617b9 528 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 421 430 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PANTHER PTHR22773:SF67 91 361 4.7E-107 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 252 278 1.0E-27 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 87 112 1.0E-27 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 1.0E-27 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 162 183 1.0E-27 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 115 135 1.0E-27 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 319 331 1.0E-27 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 PANTHER PTHR22773 91 361 4.7E-107 T 23-04-2016 THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 79 123 1.6E-9 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal THIMO_RS14005 674972c36d03fd2ce335ac41af844a68 549 Pfam PF00361 Proton-conducting membrane transporter 138 355 1.2E-46 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 SUPERFAMILY SSF52540 903 1069 2.18E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 SUPERFAMILY SSF52540 42 66 2.18E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 Pfam PF13558 Putative exonuclease SbcCD, C subunit 968 1056 3.6E-21 T 23-04-2016 THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 Gene3D G3DSA:3.40.1140.10 14 238 8.3E-22 T 23-04-2016 THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 SUPERFAMILY SSF52540 16 323 3.28E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 Gene3D G3DSA:3.40.50.300 575 727 7.2E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 Gene3D G3DSA:3.40.50.300 988 1072 7.2E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06160 ae5b3ba3e159a54da4872a70942729f2 1130 Pfam PF13555 P-loop containing region of AAA domain 17 76 4.6E-23 T 23-04-2016 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 Hamap MF_00484 Glycogen synthase [glgA]. 15 495 43.945 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 Gene3D G3DSA:3.40.50.2000 266 477 1.0E-73 T 23-04-2016 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 PANTHER PTHR12526 16 500 1.2E-136 T 23-04-2016 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 PANTHER PTHR12526:SF17 16 500 1.2E-136 T 23-04-2016 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 SUPERFAMILY SSF53756 10 497 3.49E-123 T 23-04-2016 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 Pfam PF08323 Starch synthase catalytic domain 16 253 3.9E-74 T 23-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 16 494 1.6E-167 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16720 03c10c11ab7d0242307bcce97bb1e0c8 506 Pfam PF00534 Glycosyl transferases group 1 302 462 1.4E-16 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.40.1060.10 159 264 9.7E-35 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PANTHER PTHR11670:SF30 2 638 2.0E-197 T 23-04-2016 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 Pfam PF00330 Aconitase family (aconitate hydratase) 8 407 1.7E-99 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.30.499.10 2 158 3.1E-41 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.30.499.10 275 457 1.1E-45 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PANTHER PTHR11670 2 638 2.0E-197 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 ProSitePatterns PS00450 Aconitase family signature 1. 291 307 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 SUPERFAMILY SSF52016 438 635 2.94E-43 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 112 125 5.4E-22 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 349 362 5.4E-22 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 126 141 5.4E-22 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 202 215 5.4E-22 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 92 100 5.4E-22 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 188 201 5.4E-22 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.20.19.10 458 634 2.0E-38 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 Pfam PF00694 Aconitase C-terminal domain 510 577 1.9E-18 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 ProSitePatterns PS01244 Aconitase family signature 2. 349 362 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS01170 f3beca427af8fa754d2d5501cacd9b81 639 SUPERFAMILY SSF53732 2 415 1.18E-133 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 SMART SM00052 142 387 4.1E-75 T 23-04-2016 IPR001633 EAL domain THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 PANTHER PTHR33121:SF13 128 399 1.1E-68 T 23-04-2016 THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 PANTHER PTHR33121 128 399 1.1E-68 T 23-04-2016 THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 Gene3D G3DSA:3.40.50.2300 11 148 1.9E-23 T 23-04-2016 THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 SMART SM00448 8 127 2.5E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 SUPERFAMILY SSF141868 148 395 3.01E-75 T 23-04-2016 IPR001633 EAL domain THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 SUPERFAMILY SSF52172 11 136 1.99E-24 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 Pfam PF00072 Response regulator receiver domain 11 127 9.3E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 Pfam PF00563 EAL domain 149 382 1.4E-60 T 23-04-2016 IPR001633 EAL domain THIMO_RS02985 613b1e2b278fce10c74d69ce51482bd8 408 Gene3D G3DSA:3.20.20.450 149 395 3.5E-76 T 23-04-2016 IPR001633 EAL domain THIMO_RS16760 33515c47f60240d19d16bec3bda0407f 697 PANTHER PTHR10010:SF26 43 493 3.4E-41 T 23-04-2016 THIMO_RS16760 33515c47f60240d19d16bec3bda0407f 697 PANTHER PTHR10010 43 493 3.4E-41 T 23-04-2016 THIMO_RS16760 33515c47f60240d19d16bec3bda0407f 697 Pfam PF02690 Na+/Pi-cotransporter 52 191 1.5E-36 T 23-04-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 THIMO_RS16760 33515c47f60240d19d16bec3bda0407f 697 Pfam PF02690 Na+/Pi-cotransporter 215 307 1.3E-10 T 23-04-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 SUPERFAMILY SSF111369 55 305 5.49E-86 T 23-04-2016 THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 380 1.4E-83 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 298 4.8E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 PANTHER PTHR30158 1 404 7.7E-168 T 23-04-2016 THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 Gene3D G3DSA:2.40.50.100 69 102 1.4E-23 T 23-04-2016 THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 Gene3D G3DSA:2.40.50.100 177 212 1.4E-23 T 23-04-2016 THIMO_RS04065 3e0437ec911a130adf0fd52498bf3b1e 404 PANTHER PTHR30158:SF3 1 404 7.7E-168 T 23-04-2016 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 127 140 3.1E-20 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 97 3.1E-20 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 247 261 3.1E-20 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 141 154 3.1E-20 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 Gene3D G3DSA:3.40.50.1820 31 302 1.4E-60 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 SUPERFAMILY SSF53474 38 302 2.16E-61 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 Pfam PF12697 Alpha/beta hydrolase family 58 295 7.5E-24 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PANTHER PTHR10992 40 303 7.4E-57 T 23-04-2016 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00412 Epoxide hydrolase signature 141 154 2.3E-9 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00412 Epoxide hydrolase signature 82 97 2.3E-9 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS05305 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00412 Epoxide hydrolase signature 278 300 2.3E-9 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 THIMO_RS04485 4152eb2887c057a995ecccacfd14c85a 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 257 2.8E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS04485 4152eb2887c057a995ecccacfd14c85a 275 PANTHER PTHR30222:SF1 9 261 6.8E-80 T 23-04-2016 THIMO_RS04485 4152eb2887c057a995ecccacfd14c85a 275 PANTHER PTHR30222 9 261 6.8E-80 T 23-04-2016 THIMO_RS04485 4152eb2887c057a995ecccacfd14c85a 275 SUPERFAMILY SSF161098 2 258 1.59E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS04485 4152eb2887c057a995ecccacfd14c85a 275 Gene3D G3DSA:1.10.3720.10 4 261 2.7E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09095 0da95b791fbb3fb817a7decd0500c709 127 PRINTS PR00113 Alkaline phosphatase signature 22 42 2.9E-7 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS09095 0da95b791fbb3fb817a7decd0500c709 127 PRINTS PR00113 Alkaline phosphatase signature 72 87 2.9E-7 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS09095 0da95b791fbb3fb817a7decd0500c709 127 SUPERFAMILY SSF53649 13 98 6.8E-21 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS09095 0da95b791fbb3fb817a7decd0500c709 127 Pfam PF00245 Alkaline phosphatase 22 96 4.7E-15 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS09095 0da95b791fbb3fb817a7decd0500c709 127 Gene3D G3DSA:3.40.720.10 12 95 1.8E-22 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS09095 0da95b791fbb3fb817a7decd0500c709 127 PANTHER PTHR11596 21 91 8.0E-17 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF49299 1314 1419 3.14E-8 T 23-04-2016 IPR000601 PKD domain THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 PANTHER PTHR35889:SF2 920 1116 5.9E-14 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.130.10.140 643 857 4.1E-24 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.130.10.140 86 424 1.2E-44 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.130.10.140 470 574 1.2E-44 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 960 1112 2.7E-36 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF49899 917 1118 7.5E-44 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 PANTHER PTHR35889 920 1116 5.9E-14 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.60.40.670 1351 1415 8.3E-7 T 23-04-2016 IPR000601 PKD domain THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SMART SM00089 1323 1416 0.0015 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF110296 319 395 3.4E-36 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF110296 74 292 3.4E-36 T 23-04-2016 THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.60.120.200 918 1116 4.6E-46 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 Pfam PF16640 Bacterial Ig-like domain (group 3) 1644 1733 1.8E-17 T 23-04-2016 IPR032109 Bacterial Ig-like domain (group 3) THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SMART SM00560 978 1110 2.0E-12 T 23-04-2016 IPR006558 LamG-like jellyroll fold THIMO_RS18090 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF110296 643 840 3.14E-11 T 23-04-2016 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 PANTHER PTHR21403:SF3 7 210 5.1E-87 T 23-04-2016 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 Pfam PF01634 ATP phosphoribosyltransferase 56 207 1.3E-48 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 146 167 - T 23-04-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 Gene3D G3DSA:3.40.190.10 122 180 2.3E-28 T 23-04-2016 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 PANTHER PTHR21403 7 210 5.1E-87 T 23-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 186 5.6E-58 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 6 211 53.831 T 23-04-2016 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 SUPERFAMILY SSF53850 5 211 3.69E-66 T 23-04-2016 THIMO_RS13105 1ade297b8c0fe58d209f0fb325b16d5f 213 Gene3D G3DSA:3.40.190.10 7 121 4.3E-35 T 23-04-2016 THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 9 247 1.2E-70 T 23-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 Gene3D G3DSA:3.30.1330.30 9 80 1.2E-16 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 9 82 7.8E-13 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 PANTHER PTHR12029 11 250 4.2E-73 T 23-04-2016 THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 SUPERFAMILY SSF75217 78 248 9.81E-48 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 Gene3D G3DSA:3.40.1280.10 98 248 2.3E-54 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 Pfam PF00588 SpoU rRNA Methylase family 101 241 1.0E-37 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 SMART SM00967 8 84 2.4E-11 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 6 248 41.305 T 23-04-2016 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB THIMO_RS11135 fffea54659418d32c3c303fce44883b0 252 SUPERFAMILY SSF55315 8 80 5.53E-14 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like THIMO_RS06720 2e20bb80283c6f2dda1b52b3e88fc79e 137 Gene3D G3DSA:3.10.580.10 1 116 1.7E-19 T 23-04-2016 THIMO_RS06720 2e20bb80283c6f2dda1b52b3e88fc79e 137 SMART SM00116 69 117 0.0049 T 23-04-2016 IPR000644 CBS domain THIMO_RS06720 2e20bb80283c6f2dda1b52b3e88fc79e 137 SMART SM00116 4 52 3.1E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS06720 2e20bb80283c6f2dda1b52b3e88fc79e 137 SUPERFAMILY SSF54631 1 116 3.28E-22 T 23-04-2016 THIMO_RS06720 2e20bb80283c6f2dda1b52b3e88fc79e 137 Pfam PF00571 CBS domain 62 116 1.5E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS06720 2e20bb80283c6f2dda1b52b3e88fc79e 137 Pfam PF00571 CBS domain 1 50 2.2E-8 T 23-04-2016 IPR000644 CBS domain THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 SUPERFAMILY SSF52540 7 229 2.32E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 SMART SM00382 35 242 2.0E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 SMART SM00382 353 543 3.7E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 Gene3D G3DSA:3.40.50.300 326 548 1.5E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 Gene3D G3DSA:3.40.50.300 6 232 1.8E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 SUPERFAMILY SSF52540 325 547 1.63E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 PANTHER PTHR24220:SF0 7 233 6.7E-134 T 23-04-2016 THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 PANTHER PTHR24220:SF0 306 448 6.7E-134 T 23-04-2016 THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 Pfam PF00005 ABC transporter 345 488 3.0E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 Pfam PF00005 ABC transporter 25 169 1.1E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 PANTHER PTHR24220 7 233 6.7E-134 T 23-04-2016 THIMO_RS07975 4977eccdab600d0965594833d17926c2 573 PANTHER PTHR24220 306 448 6.7E-134 T 23-04-2016 THIMO_RS17015 bef5665996b6a7e6545a99ac8585bae5 161 Pfam PF07484 Phage Tail Collar Domain 2 43 1.2E-17 T 23-04-2016 IPR011083 Phage tail collar domain THIMO_RS17015 bef5665996b6a7e6545a99ac8585bae5 161 PANTHER PTHR34720 2 161 5.0E-29 T 23-04-2016 THIMO_RS17015 bef5665996b6a7e6545a99ac8585bae5 161 SUPERFAMILY SSF88874 2 155 6.15E-29 T 23-04-2016 THIMO_RS17015 bef5665996b6a7e6545a99ac8585bae5 161 Gene3D G3DSA:3.90.1340.10 2 47 5.6E-18 T 23-04-2016 IPR011083 Phage tail collar domain THIMO_RS09635 b76628f1e81d46316d0dc515dc4c7331 427 Pfam PF06202 Amylo-alpha-1,6-glucosidase 46 143 7.6E-5 T 23-04-2016 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 THIMO_RS09635 b76628f1e81d46316d0dc515dc4c7331 427 SUPERFAMILY SSF48208 27 420 7.29E-41 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 THIMO_RS09635 b76628f1e81d46316d0dc515dc4c7331 427 Pfam PF12899 Alkaline and neutral invertase 255 411 1.3E-8 T 23-04-2016 IPR024746 Glycosyl hydrolase family 100 GO:0033926 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 THIMO_RS09635 b76628f1e81d46316d0dc515dc4c7331 427 Gene3D G3DSA:1.50.10.10 28 97 8.0E-6 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 SMART SM00471 445 592 1.1E-7 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Pfam PF08335 GlnD PII-uridylyltransferase 173 312 9.6E-36 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Gene3D G3DSA:1.10.3210.10 419 605 6.3E-20 T 23-04-2016 IPR006674 HD domain THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 29 869 8.1E-273 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF55021 795 863 2.01E-8 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 PANTHER PTHR13734 92 686 9.0E-115 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 874 298.316 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF81301 21 168 8.59E-19 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Gene3D G3DSA:3.30.70.260 795 864 2.5E-9 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Gene3D G3DSA:3.30.70.260 690 755 6.2E-5 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Gene3D G3DSA:3.30.460.10 51 162 3.8E-9 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF109604 413 540 1.76E-13 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 PANTHER PTHR13734:SF45 92 686 9.0E-115 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF55021 688 767 2.54E-8 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Pfam PF01909 Nucleotidyltransferase domain 54 95 5.9E-5 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF81593 187 301 3.69E-10 T 23-04-2016 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 PIRSF PIRSF006288 2 873 0.0 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 THIMO_RS03435 97f25505ed16f0e86e70f4991a26434e 874 Pfam PF01966 HD domain 474 572 3.5E-9 T 23-04-2016 IPR006674 HD domain THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Gene3D G3DSA:1.20.970.10 98 161 2.4E-12 T 23-04-2016 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Gene3D G3DSA:3.40.1030.10 163 413 1.4E-68 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 431 485 7.7E-11 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Gene3D G3DSA:3.90.1170.30 419 491 3.7E-17 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 203 218 - T 23-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 PANTHER PTHR10515 71 479 5.7E-132 T 23-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 SUPERFAMILY SSF54680 419 492 5.36E-16 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Hamap MF_00703 Putative thymidine phosphorylase. 6 502 57.451 T 23-04-2016 IPR028579 Putative thymidine phosphorylase KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Pfam PF02885 Glycosyl transferase family, helical bundle domain 100 160 9.4E-9 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 SUPERFAMILY SSF52418 163 413 6.54E-64 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 TIGRFAM TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase 7 499 4.3E-177 T 23-04-2016 IPR013466 Thymidine phosphorylase/AMP phosphorylase GO:0016763 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 SMART SM00941 431 498 2.7E-19 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 Pfam PF00591 Glycosyl transferase family, a/b domain 169 235 1.9E-7 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 PANTHER PTHR10515:SF0 71 479 5.7E-132 T 23-04-2016 THIMO_RS17125 629a4095b40caa344cea6f6aeaeacfd7 512 SUPERFAMILY SSF47648 97 163 7.06E-13 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain THIMO_RS10170 fc13321ed50be984aaff021e51cc539b 159 PANTHER PTHR37952:SF2 7 155 2.8E-69 T 23-04-2016 THIMO_RS10170 fc13321ed50be984aaff021e51cc539b 159 Pfam PF05981 CreA protein 24 155 2.3E-58 T 23-04-2016 IPR010292 Uncharacterised protein family CreA THIMO_RS10170 fc13321ed50be984aaff021e51cc539b 159 PANTHER PTHR37952 7 155 2.8E-69 T 23-04-2016 THIMO_RS10170 fc13321ed50be984aaff021e51cc539b 159 PIRSF PIRSF003174 1 159 1.1E-64 T 23-04-2016 IPR010292 Uncharacterised protein family CreA THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 PANTHER PTHR30244:SF5 211 385 9.5E-55 T 23-04-2016 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 PANTHER PTHR30244:SF5 1 169 9.5E-55 T 23-04-2016 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 1 383 3.8E-77 T 23-04-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 PANTHER PTHR30244 211 385 9.5E-55 T 23-04-2016 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 PANTHER PTHR30244 1 169 9.5E-55 T 23-04-2016 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 123 8.5E-21 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 SUPERFAMILY SSF64518 4 385 5.89E-73 T 23-04-2016 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 Gene3D G3DSA:1.20.1330.10 290 331 2.3E-25 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS16610 6a82dce66d2bd37d059fbb5c4e2d868f 386 Gene3D G3DSA:1.20.1330.10 38 152 2.3E-25 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 Gene3D G3DSA:1.10.1040.10 31 327 9.3E-117 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 PANTHER PTHR21371 4 339 8.1E-198 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 SUPERFAMILY SSF48179 185 334 6.29E-70 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 185 328 1.8E-66 T 23-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 17 329 1.0E-138 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 179 1.6E-75 T 23-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 SUPERFAMILY SSF51735 4 184 7.72E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01840 4ce307df71bd25396e4b6839addf475f 340 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 3 330 45.877 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 Gene3D G3DSA:3.40.50.720 97 276 6.3E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 SUPERFAMILY SSF55021 308 385 1.79E-14 T 23-04-2016 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 PANTHER PTHR10996:SF121 1 348 9.1E-115 T 23-04-2016 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 SUPERFAMILY SSF52283 3 106 9.26E-20 T 23-04-2016 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 SUPERFAMILY SSF51735 86 274 3.14E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 Gene3D G3DSA:3.40.50.720 20 96 1.2E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 PANTHER PTHR10996 1 348 9.1E-115 T 23-04-2016 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 Gene3D G3DSA:3.30.70.260 303 385 4.7E-23 T 23-04-2016 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 21 306 1.5E-18 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 274 1.9E-41 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 191 213 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site THIMO_RS06230 109da634338c4a71c987016ab3cf4022 391 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 140 167 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 PANTHER PTHR11780:SF0 21 535 1.5E-302 T 23-04-2016 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF10531 SLBB domain 363 412 2.9E-8 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 450 533 2.5E-33 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF52833 22 115 5.93E-13 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF142984 361 444 3.53E-25 T 23-04-2016 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 PANTHER PTHR11780 21 535 1.5E-302 T 23-04-2016 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 168 339 9.0E-50 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 SMART SM00928 449 494 1.4E-20 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 462 473 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF140490 447 536 2.48E-35 T 23-04-2016 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 14 81 8.1E-7 T 23-04-2016 THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 Gene3D G3DSA:3.40.30.10 22 116 3.3E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11235 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF142019 119 360 4.71E-92 T 23-04-2016 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 Gene3D G3DSA:2.170.230.10 141 202 2.0E-4 T 23-04-2016 IPR019766 Peptidase S26A, all-beta subdomain THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PANTHER PTHR12383:SF27 196 255 1.9E-89 T 23-04-2016 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PANTHER PTHR12383:SF27 5 177 1.9E-89 T 23-04-2016 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 Gene3D G3DSA:2.10.109.10 63 140 2.9E-53 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 Gene3D G3DSA:2.10.109.10 214 258 2.9E-53 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 214 233 1.0E-23 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 67 83 1.0E-23 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 131 143 1.0E-23 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 52 253 5.1E-48 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PANTHER PTHR12383 196 255 1.9E-89 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 PANTHER PTHR12383 5 177 1.9E-89 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 Pfam PF00717 Peptidase S24-like 73 155 1.1E-22 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 ProSitePatterns PS00501 Signal peptidases I serine active site. 76 83 - T 23-04-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 SUPERFAMILY SSF51306 65 269 2.22E-68 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C THIMO_RS08740 ecfa9a972f5642e73021cba92f53ec60 273 ProSitePatterns PS00760 Signal peptidases I lysine active site. 133 145 - T 23-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 THIMO_RS01820 40854b6e40f69d322cf47db2cb01aed7 150 Pfam PF01641 SelR domain 28 144 2.1E-50 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS01820 40854b6e40f69d322cf47db2cb01aed7 150 SUPERFAMILY SSF51316 22 147 2.2E-56 T 23-04-2016 IPR011057 Mss4-like THIMO_RS01820 40854b6e40f69d322cf47db2cb01aed7 150 PANTHER PTHR10173 19 144 6.7E-59 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 THIMO_RS01820 40854b6e40f69d322cf47db2cb01aed7 150 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 24 147 7.5E-55 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS01820 40854b6e40f69d322cf47db2cb01aed7 150 PANTHER PTHR10173:SF18 19 144 6.7E-59 T 23-04-2016 THIMO_RS01820 40854b6e40f69d322cf47db2cb01aed7 150 Gene3D G3DSA:2.170.150.20 20 147 2.3E-58 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 PANTHER PTHR12818 1 235 3.4E-90 T 23-04-2016 THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 Gene3D G3DSA:2.40.30.70 5 155 7.8E-53 T 23-04-2016 IPR023370 TsaA-like domain THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 PANTHER PTHR12818:SF6 1 235 3.4E-90 T 23-04-2016 THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 4 149 1.0E-42 T 23-04-2016 IPR023370 TsaA-like domain THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 Pfam PF01980 Uncharacterised protein family UPF0066 20 143 1.8E-43 T 23-04-2016 IPR023370 TsaA-like domain THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 23-04-2016 IPR023368 Uncharacterised protein family UPF0066, conserved site THIMO_RS11655 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 SUPERFAMILY SSF118196 2 230 1.31E-78 T 23-04-2016 IPR023370 TsaA-like domain THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 Pfam PF05729 NACHT domain 78 224 1.7E-12 T 23-04-2016 THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 Gene3D G3DSA:1.25.10.10 585 696 7.7E-7 T 23-04-2016 IPR011989 Armadillo-like helical THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 PANTHER PTHR24106 369 466 1.2E-16 T 23-04-2016 THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 PANTHER PTHR24106 77 350 1.2E-16 T 23-04-2016 THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 SUPERFAMILY SSF52540 56 246 3.99E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 Gene3D G3DSA:3.40.50.300 66 217 7.4E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 PANTHER PTHR24106:SF149 369 466 1.2E-16 T 23-04-2016 THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 PANTHER PTHR24106:SF149 77 350 1.2E-16 T 23-04-2016 THIMO_RS07605 9958e4bdb1f4c34b5334904c6ee51438 773 SUPERFAMILY SSF48371 580 696 4.72E-7 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 THIMO_RS16105 157ad2a17ade6202fa498ccf01bcda5c 427 PANTHER PTHR10110:SF86 1 407 8.4E-88 T 23-04-2016 THIMO_RS16105 157ad2a17ade6202fa498ccf01bcda5c 427 Pfam PF00999 Sodium/hydrogen exchanger family 9 406 1.7E-59 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 THIMO_RS16105 157ad2a17ade6202fa498ccf01bcda5c 427 PANTHER PTHR10110 1 407 8.4E-88 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 Pfam PF01964 Radical SAM ThiC family 139 590 9.1E-196 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 596 55.752 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 594 2.2E-212 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 PANTHER PTHR30557 19 97 0.0 T 23-04-2016 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 PANTHER PTHR30557 131 161 0.0 T 23-04-2016 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 PANTHER PTHR30557 193 627 0.0 T 23-04-2016 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 PANTHER PTHR30557:SF1 19 97 0.0 T 23-04-2016 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 PANTHER PTHR30557:SF1 131 161 0.0 T 23-04-2016 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 PANTHER PTHR30557:SF1 193 627 0.0 T 23-04-2016 THIMO_RS08275 fc3b6acb7bf8283c123e2d1c9724cc01 630 Pfam PF13667 ThiC-associated domain 22 99 2.2E-31 T 23-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 115 412 1.3E-75 T 23-04-2016 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 Gene3D G3DSA:3.30.460.20 60 222 4.4E-38 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 Gene3D G3DSA:1.20.58.340 338 412 3.7E-30 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 PANTHER PTHR21535 89 412 1.6E-67 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 SUPERFAMILY SSF144083 348 408 1.44E-19 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 PANTHER PTHR21535:SF33 89 412 1.6E-67 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 Gene3D G3DSA:1.20.58.340 223 334 2.9E-37 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 SUPERFAMILY SSF143865 81 347 1.31E-66 T 23-04-2016 THIMO_RS05535 928b61c143add844aa480b8bc3caa590 412 Pfam PF01544 CorA-like Mg2+ transporter protein 116 408 1.0E-69 T 23-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 THIMO_RS11810 4c4b0cefbaff4987cbf6b906c950eb8d 392 Pfam PF00487 Fatty acid desaturase 10 213 6.0E-11 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 THIMO_RS11810 4c4b0cefbaff4987cbf6b906c950eb8d 392 PANTHER PTHR11351 5 378 3.4E-129 T 23-04-2016 THIMO_RS11810 4c4b0cefbaff4987cbf6b906c950eb8d 392 PANTHER PTHR11351:SF33 5 378 3.4E-129 T 23-04-2016 THIMO_RS11810 4c4b0cefbaff4987cbf6b906c950eb8d 392 Pfam PF01610 Transposase 275 388 5.1E-8 T 23-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain THIMO_RS11585 b54eeb578f4afb00fe099a9a3c9c7d10 285 Gene3D G3DSA:3.40.630.30 3 127 2.0E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11585 b54eeb578f4afb00fe099a9a3c9c7d10 285 Gene3D G3DSA:3.40.630.30 156 257 1.1E-4 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11585 b54eeb578f4afb00fe099a9a3c9c7d10 285 PANTHER PTHR21471:SF52 1 285 2.2E-54 T 23-04-2016 THIMO_RS11585 b54eeb578f4afb00fe099a9a3c9c7d10 285 Pfam PF00583 Acetyltransferase (GNAT) family 48 123 4.1E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS11585 b54eeb578f4afb00fe099a9a3c9c7d10 285 SUPERFAMILY SSF55729 5 264 2.45E-35 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11585 b54eeb578f4afb00fe099a9a3c9c7d10 285 PANTHER PTHR21471 1 285 2.2E-54 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.70.1430 39 137 1.1E-18 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 3.9E-42 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PANTHER PTHR32063 925 1055 1.0E-205 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 PANTHER PTHR32063 1 909 1.0E-205 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 Pfam PF00873 AcrB/AcrD/AcrF family 1 1032 2.7E-174 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82693 269 325 4.81E-10 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82693 148 183 4.81E-10 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82693 39 130 2.09E-16 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.2090.10 706 792 8.3E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:1.10.3850.10 798 1034 3.7E-49 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:1.10.3850.10 277 492 1.2E-51 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82714 184 265 3.92E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82866 292 490 1.05E-39 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82714 707 792 1.19E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82866 793 1034 2.75E-38 T 23-04-2016 THIMO_RS05870 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.2090.10 184 265 1.8E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 PANTHER PTHR24078 1 348 2.1E-162 T 23-04-2016 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF57938 133 210 2.09E-22 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 371 42.275 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.10.230.10 141 209 2.2E-24 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 25 40 7.3E-32 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 62 81 7.3E-32 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 42 62 7.3E-32 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 7 25 7.3E-32 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 PANTHER PTHR24078:SF231 1 348 2.1E-162 T 23-04-2016 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 348 6.2E-140 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF46565 1 110 1.15E-37 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:1.10.287.110 1 104 4.0E-38 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.60.260.20 255 332 1.7E-22 T 23-04-2016 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 23-04-2016 IPR018253 DnaJ domain, conserved site THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Pfam PF00684 DnaJ central domain 146 206 5.0E-14 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 SMART SM00271 4 62 1.3E-33 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF49493 113 168 4.45E-21 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF49493 212 266 4.45E-21 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.60.260.20 210 253 3.0E-22 T 23-04-2016 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.60.260.20 108 140 3.0E-22 T 23-04-2016 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF49493 258 343 1.96E-22 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Pfam PF00226 DnaJ domain 5 67 8.6E-29 T 23-04-2016 IPR001623 DnaJ domain THIMO_RS12135 4d158ff138a8ffd4f1c2545a7f46a8be 377 Pfam PF01556 DnaJ C terminal domain 120 332 2.0E-44 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal THIMO_RS16270 df45f1bc014cb8e6bfd5e1c8f33ab109 638 SUPERFAMILY SSF46626 392 438 9.74E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16270 df45f1bc014cb8e6bfd5e1c8f33ab109 638 SUPERFAMILY SSF46626 523 567 9.74E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16270 df45f1bc014cb8e6bfd5e1c8f33ab109 638 SUPERFAMILY SSF46626 619 638 9.74E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16270 df45f1bc014cb8e6bfd5e1c8f33ab109 638 Gene3D G3DSA:1.10.760.10 481 482 3.0E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16270 df45f1bc014cb8e6bfd5e1c8f33ab109 638 Gene3D G3DSA:1.10.760.10 392 429 3.0E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16270 df45f1bc014cb8e6bfd5e1c8f33ab109 638 Gene3D G3DSA:1.10.760.10 530 637 3.0E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS17055 271dcd06515a9e546a8fb5b3d1432642 341 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 127 322 1.8E-10 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase THIMO_RS17055 271dcd06515a9e546a8fb5b3d1432642 341 SUPERFAMILY SSF51197 118 336 9.16E-37 T 23-04-2016 THIMO_RS17055 271dcd06515a9e546a8fb5b3d1432642 341 PANTHER PTHR31630:SF6 110 334 1.6E-31 T 23-04-2016 THIMO_RS17055 271dcd06515a9e546a8fb5b3d1432642 341 PANTHER PTHR31630 110 334 1.6E-31 T 23-04-2016 THIMO_RS17055 271dcd06515a9e546a8fb5b3d1432642 341 Gene3D G3DSA:2.60.120.620 113 333 7.1E-27 T 23-04-2016 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 SUPERFAMILY SSF55174 324 401 8.77E-18 T 23-04-2016 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 401 7.6E-122 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 6 402 48.843 T 23-04-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 56 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 Gene3D G3DSA:3.40.50.620 9 231 9.8E-84 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 SUPERFAMILY SSF52374 9 320 9.32E-97 T 23-04-2016 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 Gene3D G3DSA:3.10.290.10 331 401 5.0E-25 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 PANTHER PTHR11766 9 402 1.7E-227 T 23-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 SMART SM00363 341 403 5.9E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 Pfam PF01479 S4 domain 342 381 2.8E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 1.3E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 1.3E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 1.3E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 215 227 1.3E-25 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 Pfam PF00579 tRNA synthetases class I (W and Y) 36 321 2.2E-77 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 PANTHER PTHR11766:SF1 9 402 1.7E-227 T 23-04-2016 THIMO_RS04910 af12b29cde594f8c1d9e5c9a4cad5a42 403 Gene3D G3DSA:1.10.240.10 232 330 2.6E-36 T 23-04-2016 THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 Pfam PF08238 Sel1 repeat 40 68 8.1E-4 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 Pfam PF08238 Sel1 repeat 70 104 3.7E-4 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 Pfam PF01464 Transglycosylase SLT domain 154 256 6.3E-28 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 168 196 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 Gene3D G3DSA:1.10.530.10 142 266 5.5E-47 T 23-04-2016 THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 SUPERFAMILY SSF53955 135 265 3.38E-46 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 PANTHER PTHR21666 132 264 2.8E-38 T 23-04-2016 THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 SMART SM00671 69 104 0.0075 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 SMART SM00671 33 68 8.9E-5 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 Gene3D G3DSA:1.25.40.10 25 111 2.2E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS09450 f8f6f503bbcbe5650b88cb5811652a9b 267 SUPERFAMILY SSF81901 30 112 1.57E-14 T 23-04-2016 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 Pfam PF12795 Mechanosensitive ion channel porin domain 69 304 7.9E-50 T 23-04-2016 IPR024393 Mechanosensitive ion channel MscS, porin domain THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 PANTHER PTHR30347:SF0 62 1134 8.5E-149 T 23-04-2016 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 PANTHER PTHR30347 62 1134 8.5E-149 T 23-04-2016 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 Gene3D G3DSA:2.30.30.60 984 1033 1.9E-16 T 23-04-2016 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 SUPERFAMILY SSF82861 884 967 3.79E-7 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 Gene3D G3DSA:3.30.70.100 1038 1123 1.2E-21 T 23-04-2016 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 528 865 1.6E-98 T 23-04-2016 IPR025692 Mechanosensitive ion channel inner membrane domain 1 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 Pfam PF00924 Mechanosensitive ion channel 926 1125 2.7E-55 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 SUPERFAMILY SSF82689 1038 1134 1.7E-26 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 THIMO_RS03390 8ad4d10beea20f0119776cadf9f35835 1160 SUPERFAMILY SSF50182 969 1034 1.63E-17 T 23-04-2016 IPR010920 LSM domain THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SUPERFAMILY SSF48452 452 686 1.63E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 PANTHER PTHR23083 2 8 1.0E-27 T 23-04-2016 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 PANTHER PTHR23083 450 849 1.0E-27 T 23-04-2016 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF13432 Tetratricopeptide repeat 485 538 0.014 T 23-04-2016 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SUPERFAMILY SSF48452 683 849 3.8E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 683 716 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 717 750 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 547 580 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 445 478 34.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 649 682 90.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 615 648 90.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 821 854 220.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 479 512 170.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 513 546 90.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 751 784 180.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 753 775 0.35 T 23-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 549 571 0.35 T 23-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 685 707 0.35 T 23-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 583 605 0.35 T 23-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 719 741 0.35 T 23-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Gene3D G3DSA:1.25.40.10 594 806 9.3E-29 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS02350 d88e2c330b08af8edddd8ab211e77a23 967 Gene3D G3DSA:1.25.40.10 444 593 3.2E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 SUPERFAMILY SSF55347 139 290 7.63E-12 T 23-04-2016 THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 SUPERFAMILY SSF51735 4 145 8.02E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 Gene3D G3DSA:3.30.360.10 133 306 3.4E-24 T 23-04-2016 THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 120 3.2E-26 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 PANTHER PTHR22604:SF14 1 306 3.1E-68 T 23-04-2016 THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 PANTHER PTHR22604 1 306 3.1E-68 T 23-04-2016 THIMO_RS15535 c1fbc42b73c1012a6c91292cc56362f7 311 Gene3D G3DSA:3.40.50.720 1 132 7.5E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 Gene3D G3DSA:2.160.10.10 2 190 4.3E-41 T 23-04-2016 THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 SUPERFAMILY SSF51161 2 254 2.36E-64 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 47 5.1E-6 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 138 1.4E-7 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 PIRSF PIRSF000456 1 263 1.8E-96 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 PANTHER PTHR23416:SF8 1 248 4.6E-103 T 23-04-2016 THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 3 254 5.5E-97 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 PANTHER PTHR23416 1 248 4.6E-103 T 23-04-2016 THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 175 254 4.6E-27 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS00910 eef0449418f5ecaccfc3df1504e35ada 274 Gene3D G3DSA:1.20.1180.10 192 255 3.8E-20 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 THIMO_RS12925 0f9d9fc6d08340e6b88c4b064170518d 146 PANTHER PTHR37164 1 145 8.2E-28 T 23-04-2016 THIMO_RS12925 0f9d9fc6d08340e6b88c4b064170518d 146 Gene3D G3DSA:1.20.120.50 3 128 6.4E-32 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS12925 0f9d9fc6d08340e6b88c4b064170518d 146 SUPERFAMILY SSF47188 2 129 1.31E-28 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS12925 0f9d9fc6d08340e6b88c4b064170518d 146 Pfam PF01814 Hemerythrin HHE cation binding domain 13 123 9.0E-11 T 23-04-2016 IPR012312 Haemerythrin-like THIMO_RS12925 0f9d9fc6d08340e6b88c4b064170518d 146 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 23-04-2016 IPR016131 Haemerythrin, iron-binding site GO:0046872 THIMO_RS12925 0f9d9fc6d08340e6b88c4b064170518d 146 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 127 1.0E-34 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 PANTHER PTHR33603:SF1 1 154 2.7E-59 T 23-04-2016 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 29.347 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 PANTHER PTHR33603 1 154 2.7E-59 T 23-04-2016 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 PIRSF PIRSF004505 1 154 7.6E-45 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 154 1.7E-49 T 23-04-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 SUPERFAMILY SSF75217 1 153 1.15E-49 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 3.9E-51 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 THIMO_RS12425 54e9f4da45cc7d99a3a0694abb6c8f45 155 Gene3D G3DSA:3.40.1280.10 1 154 4.4E-55 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal THIMO_RS08955 96d20a54a47570d864cb8529c3f0e8fa 239 Pfam PF13649 Methyltransferase domain 34 127 3.0E-15 T 23-04-2016 THIMO_RS08955 96d20a54a47570d864cb8529c3f0e8fa 239 SUPERFAMILY SSF53335 14 204 9.05E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08955 96d20a54a47570d864cb8529c3f0e8fa 239 Gene3D G3DSA:3.40.50.150 29 221 6.4E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08955 96d20a54a47570d864cb8529c3f0e8fa 239 PANTHER PTHR10108 158 187 3.5E-19 T 23-04-2016 THIMO_RS08955 96d20a54a47570d864cb8529c3f0e8fa 239 PANTHER PTHR10108 28 141 3.5E-19 T 23-04-2016 THIMO_RS12615 c93ba0297a07dbb6e5979490cfdc744e 108 Pfam PF00581 Rhodanese-like domain 10 97 5.1E-13 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS12615 c93ba0297a07dbb6e5979490cfdc744e 108 SUPERFAMILY SSF52821 3 102 7.2E-31 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS12615 c93ba0297a07dbb6e5979490cfdc744e 108 Gene3D G3DSA:3.40.250.10 2 102 4.4E-29 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS12615 c93ba0297a07dbb6e5979490cfdc744e 108 PANTHER PTHR12231 18 100 5.1E-17 T 23-04-2016 THIMO_RS12615 c93ba0297a07dbb6e5979490cfdc744e 108 SMART SM00450 6 101 2.8E-23 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 418 8.8E-179 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 Gene3D G3DSA:1.10.645.10 7 257 9.2E-45 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 Gene3D G3DSA:1.10.645.10 258 409 1.4E-20 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 SUPERFAMILY SSF56762 194 418 1.57E-135 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 SUPERFAMILY SSF56762 16 167 1.57E-135 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 PANTHER PTHR11993:SF10 191 413 1.3E-238 T 23-04-2016 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 PANTHER PTHR11993:SF10 3 164 1.3E-238 T 23-04-2016 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 418 2.0E-123 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 PANTHER PTHR11993 191 413 1.3E-238 T 23-04-2016 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 PANTHER PTHR11993 3 164 1.3E-238 T 23-04-2016 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 23-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 THIMO_RS02805 43e7807044bce58e352adaec34b80c85 418 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 418 49.276 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 Pfam PF00227 Proteasome subunit 4 174 3.2E-22 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 177 42.061 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 PANTHER PTHR32194 4 177 1.1E-120 T 23-04-2016 THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 177 1.7E-86 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 Gene3D G3DSA:3.60.20.10 7 177 3.3E-84 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 SUPERFAMILY SSF56235 3 176 1.53E-58 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS15600 e39355ec8f0061b7b3373ec6ff926a09 182 PIRSF PIRSF039093 1 180 2.6E-89 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 THIMO_RS17225 3b0e0fabfd0770f54fb55cd32dd65c33 83 PANTHER PTHR24960 1 76 9.2E-26 T 23-04-2016 THIMO_RS17225 3b0e0fabfd0770f54fb55cd32dd65c33 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS17225 3b0e0fabfd0770f54fb55cd32dd65c33 83 SUPERFAMILY SSF54862 4 68 1.15E-19 T 23-04-2016 THIMO_RS17225 3b0e0fabfd0770f54fb55cd32dd65c33 83 Gene3D G3DSA:3.30.70.20 3 75 4.2E-19 T 23-04-2016 THIMO_RS17225 3b0e0fabfd0770f54fb55cd32dd65c33 83 Pfam PF00037 4Fe-4S binding domain 4 25 1.8E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS17225 3b0e0fabfd0770f54fb55cd32dd65c33 83 PANTHER PTHR24960:SF38 1 76 9.2E-26 T 23-04-2016 THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 SUPERFAMILY SSF55785 25 131 5.98E-29 T 23-04-2016 IPR000014 PAS domain THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 SMART SM00086 89 131 9.4E-11 T 23-04-2016 IPR001610 PAC motif THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 Pfam PF13426 PAS domain 26 130 9.1E-23 T 23-04-2016 IPR000014 PAS domain THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 PANTHER PTHR24351 27 139 4.1E-47 T 23-04-2016 THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 SMART SM00091 14 83 6.4E-5 T 23-04-2016 IPR000014 PAS domain THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 Gene3D G3DSA:3.30.450.20 26 130 1.1E-35 T 23-04-2016 THIMO_RS04155 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 138 1.5E-22 T 23-04-2016 IPR000014 PAS domain THIMO_RS01970 1445552e886119196599a1d85e10d7b0 119 Gene3D G3DSA:1.10.10.370 43 110 4.3E-17 T 23-04-2016 THIMO_RS01970 1445552e886119196599a1d85e10d7b0 119 SUPERFAMILY SSF69721 17 110 4.58E-19 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS01970 1445552e886119196599a1d85e10d7b0 119 Pfam PF04358 DsrC like protein 22 109 2.8E-20 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS01970 1445552e886119196599a1d85e10d7b0 119 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 23 110 6.7E-17 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS10600 a1557f61471ddabb93527e92a2328ed9 135 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 38 135 2.0E-44 T 23-04-2016 IPR014291 SUF system FeS cluster assembly associated THIMO_RS10600 a1557f61471ddabb93527e92a2328ed9 135 PANTHER PTHR13696 4 132 8.1E-23 T 23-04-2016 THIMO_RS10600 a1557f61471ddabb93527e92a2328ed9 135 SUPERFAMILY SSF117916 37 134 1.31E-31 T 23-04-2016 THIMO_RS10600 a1557f61471ddabb93527e92a2328ed9 135 Pfam PF01883 Domain of unknown function DUF59 40 109 5.2E-21 T 23-04-2016 IPR002744 Domain of unknown function DUF59 THIMO_RS10600 a1557f61471ddabb93527e92a2328ed9 135 PANTHER PTHR13696:SF62 4 132 8.1E-23 T 23-04-2016 THIMO_RS17385 f9935ccdc7b355074bb3bd548118033f 143 PRINTS PR01438 Universal stress protein signature 2 20 3.5E-5 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS17385 f9935ccdc7b355074bb3bd548118033f 143 PRINTS PR01438 Universal stress protein signature 98 110 3.5E-5 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS17385 f9935ccdc7b355074bb3bd548118033f 143 PRINTS PR01438 Universal stress protein signature 115 137 3.5E-5 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS17385 f9935ccdc7b355074bb3bd548118033f 143 SUPERFAMILY SSF52402 1 137 2.43E-15 T 23-04-2016 THIMO_RS17385 f9935ccdc7b355074bb3bd548118033f 143 Pfam PF00582 Universal stress protein family 1 137 1.6E-12 T 23-04-2016 IPR006016 UspA GO:0006950 THIMO_RS17385 f9935ccdc7b355074bb3bd548118033f 143 Gene3D G3DSA:3.40.50.620 2 137 2.7E-15 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS16665 93ab52a81ad58e746e87192155f575ce 144 PANTHER PTHR30353 3 142 1.7E-36 T 23-04-2016 IPR032818 DedA family THIMO_RS16665 93ab52a81ad58e746e87192155f575ce 144 PANTHER PTHR30353:SF12 3 142 1.7E-36 T 23-04-2016 THIMO_RS16665 93ab52a81ad58e746e87192155f575ce 144 Pfam PF09335 SNARE associated Golgi protein 22 135 7.2E-12 T 23-04-2016 IPR032816 SNARE associated Golgi protein THIMO_RS06095 83d70589545bb4a402342fc4d36f50a7 97 PANTHER PTHR34405 3 94 5.7E-24 T 23-04-2016 THIMO_RS06095 83d70589545bb4a402342fc4d36f50a7 97 Pfam PF09827 CRISPR associated protein Cas2 5 69 1.6E-17 T 23-04-2016 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 THIMO_RS06095 83d70589545bb4a402342fc4d36f50a7 97 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 4 96 15.133 T 23-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 THIMO_RS06095 83d70589545bb4a402342fc4d36f50a7 97 SUPERFAMILY SSF143430 4 70 1.44E-21 T 23-04-2016 THIMO_RS06095 83d70589545bb4a402342fc4d36f50a7 97 Gene3D G3DSA:3.30.70.240 5 69 1.1E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS06095 83d70589545bb4a402342fc4d36f50a7 97 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 4 70 2.2E-12 T 23-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 PANTHER PTHR24032:SF27 1 264 2.2E-112 T 23-04-2016 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 270 45.666 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 261 4.5E-93 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 Gene3D G3DSA:3.60.21.10 169 262 1.0E-55 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 Gene3D G3DSA:3.60.21.10 1 132 1.0E-55 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 PIRSF PIRSF000903 1 271 1.5E-108 T 23-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 Pfam PF00149 Calcineurin-like phosphoesterase 4 126 2.3E-13 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 PANTHER PTHR24032 1 264 2.2E-112 T 23-04-2016 THIMO_RS15520 ea543ee08807cb58046d765490c57148 278 SUPERFAMILY SSF56300 1 271 1.57E-52 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS08845 b09db1697b0da93140d04382732a0d58 107 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 3 89 22.168 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 THIMO_RS08845 b09db1697b0da93140d04382732a0d58 107 SUPERFAMILY SSF101386 4 93 2.43E-26 T 23-04-2016 THIMO_RS08845 b09db1697b0da93140d04382732a0d58 107 PANTHER PTHR21256 4 106 1.5E-43 T 23-04-2016 THIMO_RS08845 b09db1697b0da93140d04382732a0d58 107 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 92 1.4E-17 T 23-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 THIMO_RS08845 b09db1697b0da93140d04382732a0d58 107 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 6 89 8.7E-33 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 SUPERFAMILY SSF46785 1 86 1.17E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 Gene3D G3DSA:3.40.190.10 178 265 5.6E-23 T 23-04-2016 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 Gene3D G3DSA:3.40.190.10 93 177 1.3E-12 T 23-04-2016 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.2E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.2E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.2E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 PANTHER PTHR30126 3 296 6.8E-121 T 23-04-2016 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 SUPERFAMILY SSF53850 93 296 1.9E-43 T 23-04-2016 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.9E-21 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 Gene3D G3DSA:1.10.10.10 4 89 2.1E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 PANTHER PTHR30126:SF5 3 296 6.8E-121 T 23-04-2016 THIMO_RS14000 0621ee8874dc63786222722e1b1f5592 302 Pfam PF03466 LysR substrate binding domain 91 295 1.1E-47 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 Pfam PF16234 Domain of unknown function (DUF4892) 18 125 6.9E-7 T 23-04-2016 IPR032608 Protein of unknown function DUF4892 THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 SUPERFAMILY SSF103088 235 342 6.02E-34 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 PRINTS PR01021 OMPA domain signature 272 287 6.2E-16 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 PRINTS PR01021 OMPA domain signature 242 264 6.2E-16 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 PRINTS PR01021 OMPA domain signature 287 303 6.2E-16 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 Pfam PF00691 OmpA family 241 337 1.0E-19 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 PANTHER PTHR30128 204 342 5.3E-35 T 23-04-2016 THIMO_RS13985 3bbef3f0616309434aaebcd4a4851b66 344 Gene3D G3DSA:3.30.1330.60 239 341 5.1E-35 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 PANTHER PTHR24421:SF25 66 189 8.9E-40 T 23-04-2016 THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 PANTHER PTHR24421:SF25 314 518 8.9E-40 T 23-04-2016 THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 PIRSF PIRSF003167 48 531 2.9E-100 T 23-04-2016 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 SUPERFAMILY SSF55781 146 306 1.03E-8 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 Gene3D G3DSA:3.30.450.40 145 306 5.2E-9 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 Pfam PF07730 Histidine kinase 319 386 8.3E-14 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 PANTHER PTHR24421 66 189 8.9E-40 T 23-04-2016 THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 PANTHER PTHR24421 314 518 8.9E-40 T 23-04-2016 THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 SUPERFAMILY SSF55874 386 518 4.45E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 SMART SM00387 425 522 3.0E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 518 5.5E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11150 b2b3d99041ec2e3deebb022c92661d61 531 Gene3D G3DSA:3.30.565.10 375 519 1.5E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 417 434 2.5E-16 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 128 148 2.5E-16 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 16 39 2.5E-16 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 161 185 2.5E-16 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 54 76 2.5E-16 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 368 390 2.5E-16 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 SUPERFAMILY SSF64518 168 428 6.67E-20 T 23-04-2016 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 Pfam PF00460 Flagella basal body rod protein 10 39 1.6E-5 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 SUPERFAMILY SSF64518 480 647 4.18E-19 T 23-04-2016 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 596 647 1.2E-9 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PANTHER PTHR30033 4 495 1.5E-114 T 23-04-2016 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PANTHER PTHR30033 517 650 1.5E-114 T 23-04-2016 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 8 334 2.5E-82 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PANTHER PTHR30033:SF1 4 495 1.5E-114 T 23-04-2016 THIMO_RS16615 655af871a6f8933b539d7c172eff64fc 651 PANTHER PTHR30033:SF1 517 650 1.5E-114 T 23-04-2016 THIMO_RS16945 928ce74b5924280e0bbd0a11b6838cfe 858 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 19 296 1.5E-14 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD THIMO_RS16945 928ce74b5924280e0bbd0a11b6838cfe 858 SUPERFAMILY SSF55729 648 827 5.3E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS16945 928ce74b5924280e0bbd0a11b6838cfe 858 PANTHER PTHR34697 1 848 5.3E-265 T 23-04-2016 THIMO_RS16945 928ce74b5924280e0bbd0a11b6838cfe 858 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 538 829 7.5E-91 T 23-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal THIMO_RS16945 928ce74b5924280e0bbd0a11b6838cfe 858 PANTHER PTHR34697:SF2 1 848 5.3E-265 T 23-04-2016 THIMO_RS06590 0fcb653362712f0adfffc45c806ea273 449 Pfam PF13447 Seven times multi-haem cytochrome CxxCH 212 385 4.4E-30 T 23-04-2016 THIMO_RS06590 0fcb653362712f0adfffc45c806ea273 449 Gene3D G3DSA:1.10.780.10 58 223 1.2E-19 T 23-04-2016 THIMO_RS06590 0fcb653362712f0adfffc45c806ea273 449 Gene3D G3DSA:1.20.850.10 244 447 3.9E-54 T 23-04-2016 THIMO_RS06590 0fcb653362712f0adfffc45c806ea273 449 SUPERFAMILY SSF48695 57 433 6.18E-57 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS06590 0fcb653362712f0adfffc45c806ea273 449 Pfam PF13435 Cytochrome c554 and c-prime 121 187 0.0013 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Pfam PF13241 Putative NAD(P)-binding 6 115 4.3E-31 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 427 4.0E-52 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.30.950.10 333 459 1.3E-48 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:1.10.8.210 150 209 1.7E-19 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 297 330 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 SUPERFAMILY SSF75615 114 208 1.83E-25 T 23-04-2016 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.30.160.110 113 148 6.7E-17 T 23-04-2016 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 SUPERFAMILY SSF53790 215 458 7.07E-83 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 PANTHER PTHR21091:SF16 17 35 1.7E-79 T 23-04-2016 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 PANTHER PTHR21091:SF16 185 449 1.7E-79 T 23-04-2016 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 PANTHER PTHR21091 17 35 1.7E-79 T 23-04-2016 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 PANTHER PTHR21091 185 449 1.7E-79 T 23-04-2016 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.40.1010.10 217 332 9.2E-47 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.40.50.720 1 111 6.4E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 SUPERFAMILY SSF51735 1 112 1.09E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 4.2E-20 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Hamap MF_01646 Siroheme synthase [cysG]. 1 461 52.573 T 23-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 PIRSF PIRSF036426 1 467 3.6E-198 T 23-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 217 452 2.6E-95 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS12620 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 3.5E-70 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 Gene3D G3DSA:3.40.640.10 2 285 1.9E-117 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 Gene3D G3DSA:3.90.1150.10 287 424 1.8E-48 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 PANTHER PTHR11808 264 425 2.6E-241 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 PANTHER PTHR11808 1 234 2.6E-241 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 421 3.1E-141 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 PANTHER PTHR11808:SF12 264 425 2.6E-241 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 PANTHER PTHR11808:SF12 1 234 2.6E-241 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 3 422 7.0E-197 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 PIRSF PIRSF001434 1 425 1.1E-129 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS13060 db0cee5353de3b2262778dde66b923a7 425 SUPERFAMILY SSF53383 1 422 1.61E-127 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS06260 ea6e4ecd1cff014e23fa5f749d6c2814 92 SUPERFAMILY SSF46689 5 50 2.15E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06260 ea6e4ecd1cff014e23fa5f749d6c2814 92 PANTHER PTHR33215:SF4 2 45 4.0E-14 T 23-04-2016 THIMO_RS06260 ea6e4ecd1cff014e23fa5f749d6c2814 92 Pfam PF01527 Transposase 4 57 5.8E-12 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS06260 ea6e4ecd1cff014e23fa5f749d6c2814 92 Pfam PF13683 Integrase core domain 37 83 1.0E-7 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS06260 ea6e4ecd1cff014e23fa5f749d6c2814 92 Gene3D G3DSA:1.10.10.60 10 54 3.1E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS06260 ea6e4ecd1cff014e23fa5f749d6c2814 92 PANTHER PTHR33215 2 45 4.0E-14 T 23-04-2016 THIMO_RS08290 1206fbc3c95aa27d21f32431c0521fb3 182 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 29 168 2.3E-15 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 THIMO_RS08290 1206fbc3c95aa27d21f32431c0521fb3 182 SMART SM00644 17 168 3.5E-41 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 THIMO_RS08290 1206fbc3c95aa27d21f32431c0521fb3 182 SUPERFAMILY SSF55846 6 180 9.68E-64 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 THIMO_RS08290 1206fbc3c95aa27d21f32431c0521fb3 182 Gene3D G3DSA:3.40.80.10 7 180 2.1E-63 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 THIMO_RS08290 1206fbc3c95aa27d21f32431c0521fb3 182 PANTHER PTHR30417 7 181 6.2E-73 T 23-04-2016 THIMO_RS08290 1206fbc3c95aa27d21f32431c0521fb3 182 PANTHER PTHR30417:SF4 7 181 6.2E-73 T 23-04-2016 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 Pfam PF01292 Prokaryotic cytochrome b561 7 198 4.6E-23 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 PANTHER PTHR30485 1 206 5.2E-34 T 23-04-2016 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 Gene3D G3DSA:1.20.950.20 4 203 3.2E-31 T 23-04-2016 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 9 32 1.2E-6 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 161 183 1.2E-6 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 SUPERFAMILY SSF81342 2 203 4.47E-25 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS08965 c736d4ec8f780470b11e78ad23e1ec6a 206 PANTHER PTHR30485:SF1 1 206 5.2E-34 T 23-04-2016 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 PANTHER PTHR11995:SF6 135 170 4.2E-50 T 23-04-2016 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 PANTHER PTHR11995:SF6 6 104 4.2E-50 T 23-04-2016 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 SUPERFAMILY SSF56770 6 172 5.23E-39 T 23-04-2016 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 17 163 1.4E-29 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 PANTHER PTHR11995 135 170 4.2E-50 T 23-04-2016 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 PANTHER PTHR11995 6 104 4.2E-50 T 23-04-2016 THIMO_RS11245 a11cdcf1cda5be96b9d8830ea517dce9 180 Gene3D G3DSA:3.40.50.700 6 171 2.5E-29 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS18015 37b0e9d8536b731507f55ddf24c35bc0 332 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 61 126 4.7E-9 T 23-04-2016 THIMO_RS18015 37b0e9d8536b731507f55ddf24c35bc0 332 SUPERFAMILY SSF55166 24 127 1.33E-10 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS18015 37b0e9d8536b731507f55ddf24c35bc0 332 SUPERFAMILY SSF53955 271 325 3.66E-6 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 262 367 6.4E-23 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.40.120.10 172 254 1.6E-20 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 4.5E-34 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.30.310.50 374 453 1.5E-17 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 258 1.4E-17 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 8.4E-27 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 8.4E-27 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 8.4E-27 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 8.4E-27 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF53738 262 364 7.85E-29 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.40.120.10 255 367 9.4E-37 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF53738 154 261 1.53E-22 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.40.120.10 6 135 2.0E-34 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF55957 373 452 1.74E-17 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 PANTHER PTHR22573:SF18 7 455 6.0E-153 T 23-04-2016 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF53738 6 177 5.1E-36 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 PANTHER PTHR22573 7 455 6.0E-153 T 23-04-2016 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 377 449 1.8E-11 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS04665 3d6f4a9ae4222ce8c741eac0abee4460 455 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 THIMO_RS10605 7b31c69d88ebcfcb89502178d648cdbe 444 PANTHER PTHR30508:SF0 27 444 4.7E-125 T 23-04-2016 THIMO_RS10605 7b31c69d88ebcfcb89502178d648cdbe 444 Pfam PF01458 Uncharacterized protein family (UPF0051) 188 411 1.9E-70 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 THIMO_RS10605 7b31c69d88ebcfcb89502178d648cdbe 444 SUPERFAMILY SSF101960 27 420 2.75E-99 T 23-04-2016 THIMO_RS10605 7b31c69d88ebcfcb89502178d648cdbe 444 PANTHER PTHR30508 27 444 4.7E-125 T 23-04-2016 THIMO_RS10605 7b31c69d88ebcfcb89502178d648cdbe 444 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 152 418 2.9E-81 T 23-04-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 SUPERFAMILY SSF55103 182 355 3.92E-22 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 SUPERFAMILY SSF56176 9 172 1.12E-28 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 PANTHER PTHR11748:SF1 9 352 1.0E-77 T 23-04-2016 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 Pfam PF02913 FAD linked oxidases, C-terminal domain 327 351 5.3E-6 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 Pfam PF01565 FAD binding domain 9 134 2.5E-19 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 PANTHER PTHR11748 9 352 1.0E-77 T 23-04-2016 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 Gene3D G3DSA:3.30.465.10 51 172 1.0E-22 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS09180 a739dad5e6664b5f7344bf6eec351158 356 Gene3D G3DSA:1.10.45.10 327 352 6.5E-9 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 PANTHER PTHR11751:SF306 15 392 5.1E-161 T 23-04-2016 THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 PANTHER PTHR11751 15 392 5.1E-161 T 23-04-2016 THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 SUPERFAMILY SSF53383 4 392 4.81E-114 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 Gene3D G3DSA:3.90.1150.10 277 392 3.8E-41 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 Gene3D G3DSA:3.40.640.10 46 276 2.7E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 THIMO_RS08690 74eb880d00ea147325ef22ba8e6d519d 394 Pfam PF00155 Aminotransferase class I and II 32 389 5.2E-73 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS15320 4e809fc56e91ed4824dec542dee68d2a 144 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 137 11.352 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS15320 4e809fc56e91ed4824dec542dee68d2a 144 PANTHER PTHR33653:SF1 1 139 4.1E-36 T 23-04-2016 THIMO_RS15320 4e809fc56e91ed4824dec542dee68d2a 144 SUPERFAMILY SSF88723 1 139 2.05E-30 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS15320 4e809fc56e91ed4824dec542dee68d2a 144 Pfam PF01850 PIN domain 5 125 4.5E-14 T 23-04-2016 IPR002716 PIN domain THIMO_RS15320 4e809fc56e91ed4824dec542dee68d2a 144 Gene3D G3DSA:3.40.50.1010 2 139 3.8E-21 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS15320 4e809fc56e91ed4824dec542dee68d2a 144 PANTHER PTHR33653 1 139 4.1E-36 T 23-04-2016 THIMO_RS12965 b7f0181842c450a960967403622bff1e 698 SUPERFAMILY SSF52540 2 297 1.45E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12965 b7f0181842c450a960967403622bff1e 698 Gene3D G3DSA:3.40.50.300 2 141 7.4E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12965 b7f0181842c450a960967403622bff1e 698 Pfam PF13476 AAA domain 5 292 3.1E-21 T 23-04-2016 THIMO_RS03520 355748dd64476188464a1a0fb26d6220 408 Pfam PF04551 GcpE protein 13 398 3.0E-113 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 THIMO_RS03520 355748dd64476188464a1a0fb26d6220 408 PIRSF PIRSF004640 1 407 4.6E-131 T 23-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 THIMO_RS03520 355748dd64476188464a1a0fb26d6220 408 PANTHER PTHR30454 4 405 6.4E-148 T 23-04-2016 THIMO_RS03520 355748dd64476188464a1a0fb26d6220 408 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 8 398 6.0E-121 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 THIMO_RS03520 355748dd64476188464a1a0fb26d6220 408 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 6 402 29.78 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 THIMO_RS04880 4ddb560a34dcb804c016c10346a00550 106 SUPERFAMILY SSF46689 3 98 1.42E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS04880 4ddb560a34dcb804c016c10346a00550 106 PANTHER PTHR33215 1 106 1.8E-21 T 23-04-2016 THIMO_RS04880 4ddb560a34dcb804c016c10346a00550 106 Pfam PF01527 Transposase 1 86 1.8E-8 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS04880 4ddb560a34dcb804c016c10346a00550 106 PANTHER PTHR33215:SF3 1 106 1.8E-21 T 23-04-2016 THIMO_RS04880 4ddb560a34dcb804c016c10346a00550 106 Gene3D G3DSA:1.10.10.60 8 94 9.6E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS09705 4ddb560a34dcb804c016c10346a00550 106 SUPERFAMILY SSF46689 3 98 1.42E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS09705 4ddb560a34dcb804c016c10346a00550 106 PANTHER PTHR33215 1 106 1.8E-21 T 23-04-2016 THIMO_RS09705 4ddb560a34dcb804c016c10346a00550 106 Pfam PF01527 Transposase 1 86 1.8E-8 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS09705 4ddb560a34dcb804c016c10346a00550 106 PANTHER PTHR33215:SF3 1 106 1.8E-21 T 23-04-2016 THIMO_RS09705 4ddb560a34dcb804c016c10346a00550 106 Gene3D G3DSA:1.10.10.60 8 94 9.6E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10775 4ddb560a34dcb804c016c10346a00550 106 SUPERFAMILY SSF46689 3 98 1.42E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10775 4ddb560a34dcb804c016c10346a00550 106 PANTHER PTHR33215 1 106 1.8E-21 T 23-04-2016 THIMO_RS10775 4ddb560a34dcb804c016c10346a00550 106 Pfam PF01527 Transposase 1 86 1.8E-8 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS10775 4ddb560a34dcb804c016c10346a00550 106 PANTHER PTHR33215:SF3 1 106 1.8E-21 T 23-04-2016 THIMO_RS10775 4ddb560a34dcb804c016c10346a00550 106 Gene3D G3DSA:1.10.10.60 8 94 9.6E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 Gene3D G3DSA:2.40.240.10 6 97 2.0E-33 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 187 31.318 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 Pfam PF01386 Ribosomal L25p family 9 94 4.5E-27 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 102 184 8.6E-30 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 Gene3D G3DSA:2.170.120.20 99 187 5.0E-30 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 PANTHER PTHR33284 10 206 8.9E-67 T 23-04-2016 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 SUPERFAMILY SSF50715 11 185 9.77E-57 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 12 97 5.0E-22 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 97 22.156 T 23-04-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 THIMO_RS14900 da78995c01d74d7620ce159c82beaff4 206 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 9 177 2.7E-48 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 Pfam PF13187 4Fe-4S dicluster domain 123 176 3.0E-9 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 Gene3D G3DSA:3.30.70.20 123 169 1.7E-9 T 23-04-2016 THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 SUPERFAMILY SSF54292 14 90 8.91E-9 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 Gene3D G3DSA:1.10.1060.10 170 200 6.2E-5 T 23-04-2016 THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 124 135 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 162 173 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 SUPERFAMILY SSF46548 90 180 3.01E-16 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 Gene3D G3DSA:3.10.20.30 11 62 1.1E-5 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS01180 4ceddaee876f75d4b4710a42233bc3e3 237 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 53 61 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 THIMO_RS06585 69946149b13f8642063a82e7c2c03ab4 181 PANTHER PTHR30333 6 164 6.1E-17 T 23-04-2016 THIMO_RS06585 69946149b13f8642063a82e7c2c03ab4 181 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 3 167 2.7E-34 T 23-04-2016 IPR005126 NapC/NirT cytochrome c, N-terminal THIMO_RS06585 69946149b13f8642063a82e7c2c03ab4 181 Gene3D G3DSA:1.10.3820.10 2 166 3.3E-21 T 23-04-2016 THIMO_RS06585 69946149b13f8642063a82e7c2c03ab4 181 SUPERFAMILY SSF48695 19 165 2.1E-21 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS06585 69946149b13f8642063a82e7c2c03ab4 181 PIRSF PIRSF000013 2 177 2.9E-14 T 23-04-2016 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PANTHER PTHR10381:SF22 17 208 1.8E-136 T 23-04-2016 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 125 144 1.2E-51 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 33 48 1.2E-51 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 73 93 1.2E-51 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 182 201 1.2E-51 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 104 121 1.2E-51 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 104 115 - T 23-04-2016 IPR018215 ClpP, Ser active site THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 Gene3D G3DSA:3.90.226.10 17 207 1.0E-88 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 PANTHER PTHR10381 17 208 1.8E-136 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 SUPERFAMILY SSF52096 25 208 8.7E-75 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 17 207 44.252 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 16 205 9.1E-103 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 Pfam PF00574 Clp protease 27 206 3.6E-86 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA THIMO_RS02030 c197d9e774af3e71de2f10825add9473 214 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 126 139 - T 23-04-2016 IPR033135 ClpP, histidine active site THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 Gene3D G3DSA:3.40.50.300 553 735 5.9E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 Pfam PF00271 Helicase conserved C-terminal domain 862 976 1.2E-16 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 PANTHER PTHR10799:SF709 533 1039 1.8E-165 T 23-04-2016 THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 Pfam PF12419 SNF2 Helicase protein 376 516 6.3E-42 T 23-04-2016 IPR022138 Helicase SWF/SNF-related THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 SMART SM00490 891 976 7.3E-23 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 SUPERFAMILY SSF52540 519 777 1.73E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 SUPERFAMILY SSF52540 780 1034 7.23E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 Gene3D G3DSA:3.40.50.300 858 1003 6.9E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 Pfam PF00176 SNF2 family N-terminal domain 576 846 1.8E-58 T 23-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 SMART SM00487 553 755 2.0E-25 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS09665 651401f08e3d226577b8eff71c3a052a 1039 PANTHER PTHR10799 533 1039 1.8E-165 T 23-04-2016 THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 5 340 50.752 T 23-04-2016 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|UniPathway: UPA00544 THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 PANTHER PTHR30480 6 294 1.7E-108 T 23-04-2016 THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 15 292 3.3E-76 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 Gene3D G3DSA:3.20.20.300 5 289 2.9E-91 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 238 255 - T 23-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 SUPERFAMILY SSF51445 5 291 2.42E-82 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS09920 5b0dabeea14465db52ba8b8ebaa11b27 361 PANTHER PTHR30480:SF7 6 294 1.7E-108 T 23-04-2016 THIMO_RS12870 0c92d87dd22ea96234dd578ff70acf73 344 PANTHER PTHR34351:SF1 32 343 7.8E-57 T 23-04-2016 THIMO_RS12870 0c92d87dd22ea96234dd578ff70acf73 344 Pfam PF01882 Protein of unknown function DUF58 238 305 4.1E-15 T 23-04-2016 IPR002881 Domain of unknown function DUF58 THIMO_RS12870 0c92d87dd22ea96234dd578ff70acf73 344 PANTHER PTHR34351 32 343 7.8E-57 T 23-04-2016 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 PANTHER PTHR30566:SF5 518 856 1.0E-50 T 23-04-2016 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 Pfam PF00924 Mechanosensitive ion channel 641 839 4.1E-44 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 SUPERFAMILY SSF82689 748 849 2.35E-17 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 PANTHER PTHR30566 518 856 1.0E-50 T 23-04-2016 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 Gene3D G3DSA:3.30.70.100 750 837 4.9E-8 T 23-04-2016 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 SUPERFAMILY SSF82861 592 680 1.16E-9 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 Gene3D G3DSA:2.30.30.60 697 746 1.6E-13 T 23-04-2016 THIMO_RS18385 a41c266682f0ed28a957ccba374089bf 862 SUPERFAMILY SSF50182 681 746 9.81E-13 T 23-04-2016 IPR010920 LSM domain THIMO_RS11640 730cc518d699eb542323caf407811209 499 Gene3D G3DSA:3.10.20.30 176 270 5.9E-24 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS11640 730cc518d699eb542323caf407811209 499 PANTHER PTHR19370 1 6 1.2E-13 T 23-04-2016 THIMO_RS11640 730cc518d699eb542323caf407811209 499 PANTHER PTHR19370 274 496 1.2E-13 T 23-04-2016 THIMO_RS11640 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 466 474 1.3E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 THIMO_RS11640 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 367 376 1.3E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 THIMO_RS11640 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 383 402 1.3E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 THIMO_RS11640 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 307 319 1.3E-10 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 THIMO_RS11640 730cc518d699eb542323caf407811209 499 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 212 220 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 THIMO_RS11640 730cc518d699eb542323caf407811209 499 Gene3D G3DSA:3.40.50.80 376 496 7.6E-20 T 23-04-2016 THIMO_RS11640 730cc518d699eb542323caf407811209 499 SUPERFAMILY SSF52343 363 496 1.26E-23 T 23-04-2016 THIMO_RS11640 730cc518d699eb542323caf407811209 499 SUPERFAMILY SSF63380 278 373 5.41E-13 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS11640 730cc518d699eb542323caf407811209 499 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 184 253 1.4E-10 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS11640 730cc518d699eb542323caf407811209 499 SUPERFAMILY SSF54292 170 264 6.16E-23 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS11640 730cc518d699eb542323caf407811209 499 Gene3D G3DSA:2.40.30.10 278 374 7.3E-16 T 23-04-2016 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 PIRSF PIRSF006250 27 298 7.8E-92 T 23-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 PANTHER PTHR32179 7 305 4.6E-119 T 23-04-2016 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 Gene3D G3DSA:3.20.20.70 152 285 3.9E-54 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 132 295 1.0E-52 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 SUPERFAMILY SSF54675 23 130 3.61E-31 T 23-04-2016 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 33 296 1.2E-89 T 23-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 Gene3D G3DSA:3.90.1170.20 24 151 6.2E-48 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 SUPERFAMILY SSF51690 132 296 8.24E-56 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS08280 c59da038e9a60ed09a7e5a1a061dda03 305 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 42 129 4.0E-25 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13181 Tetratricopeptide repeat 769 794 0.15 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SUPERFAMILY SSF48452 333 481 3.37E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 PANTHER PTHR23083 731 794 1.6E-61 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 PANTHER PTHR23083 22 242 1.6E-61 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 PANTHER PTHR23083 569 638 1.6E-61 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 PANTHER PTHR23083 673 693 1.6E-61 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 PANTHER PTHR23083 402 500 1.6E-61 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SUPERFAMILY SSF48452 440 792 7.97E-34 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 404 652 3.8E-42 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 670 710 0.017 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 208 264 0.0028 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 136 196 9.9E-7 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 567 627 9.9E-9 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 31 95 4.1E-8 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 304 369 7.4E-5 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 404 457 6.5E-6 T 23-04-2016 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 671 794 1.9E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 284 379 7.1E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 26 283 7.4E-47 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 766 799 66.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 336 369 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 61 94 5.4E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 593 626 0.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 525 558 460.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 732 765 80.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 423 456 0.23 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 197 230 45.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 457 490 480.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 559 592 30.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 27 60 0.087 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 163 196 24.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 627 660 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 95 128 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 661 694 330.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 129 162 0.23 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14685 14573ede207472f596a92b25aa9e1855 812 SUPERFAMILY SSF81901 30 259 1.1E-27 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 173 267 4.3E-22 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF47203 388 456 1.93E-43 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF47203 282 356 1.93E-43 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 PANTHER PTHR10909 381 447 1.8E-129 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 PANTHER PTHR10909 25 357 1.8E-129 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 379 3.5E-16 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:1.20.120.470 448 563 2.0E-13 T 23-04-2016 IPR020964 Acyl-CoA dehydrogenase, C-terminal THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:1.20.140.10 264 447 1.1E-50 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:1.10.540.10 31 170 4.5E-23 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 175 187 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF12186 Acyl-CoA dehydrogenase C terminal 459 558 8.8E-8 T 23-04-2016 IPR020964 Acyl-CoA dehydrogenase, C-terminal THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 413 432 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:2.40.110.10 172 263 4.0E-23 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 54 169 4.6E-18 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 PANTHER PTHR10909:SF186 381 447 1.8E-129 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 PANTHER PTHR10909:SF186 25 357 1.8E-129 T 23-04-2016 THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF158494 446 558 1.7E-13 T 23-04-2016 IPR020964 Acyl-CoA dehydrogenase, C-terminal THIMO_RS02070 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF56645 49 274 5.1E-51 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 THIMO_RS06285 e3c232fc0526d5c9962cdbb0ec2a0d65 322 Pfam PF00348 Polyprenyl synthetase 32 275 1.1E-72 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS06285 e3c232fc0526d5c9962cdbb0ec2a0d65 322 PANTHER PTHR12001 2 322 2.2E-113 T 23-04-2016 IPR017446 Polyprenyl synthetase-related THIMO_RS06285 e3c232fc0526d5c9962cdbb0ec2a0d65 322 Gene3D G3DSA:1.10.600.10 3 321 1.6E-97 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS06285 e3c232fc0526d5c9962cdbb0ec2a0d65 322 PANTHER PTHR12001:SF47 2 322 2.2E-113 T 23-04-2016 THIMO_RS06285 e3c232fc0526d5c9962cdbb0ec2a0d65 322 SUPERFAMILY SSF48576 5 322 4.16E-97 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 SUPERFAMILY SSF81901 15 142 1.44E-32 T 23-04-2016 THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 Pfam PF08238 Sel1 repeat 40 74 6.7E-4 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 Pfam PF08238 Sel1 repeat 78 110 2.2E-9 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 Pfam PF08238 Sel1 repeat 118 142 1.0E-7 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 SMART SM00671 76 111 9.4E-11 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 SMART SM00671 40 75 1.1E-4 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 SMART SM00671 112 147 3.1E-6 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 Gene3D G3DSA:1.25.40.10 19 142 1.5E-33 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS05880 5571c41af6f941e3dd223c6d8dd9e0a2 147 PANTHER PTHR11102 21 142 1.7E-31 T 23-04-2016 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 1.1E-43 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 SUPERFAMILY SSF64518 1 384 3.79E-100 T 23-04-2016 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PRINTS PR00207 Flagellin signature 76 95 6.7E-29 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PRINTS PR00207 Flagellin signature 37 54 6.7E-29 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PRINTS PR00207 Flagellin signature 111 134 6.7E-29 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PANTHER PTHR30244 2 189 2.0E-122 T 23-04-2016 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PANTHER PTHR30244 222 384 2.0E-122 T 23-04-2016 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Pfam PF00700 Bacterial flagellin C-terminal helical region 299 384 1.1E-25 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Pfam PF07196 Flagellin hook IN motif 202 252 1.6E-5 T 23-04-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PANTHER PTHR30244:SF1 2 189 2.0E-122 T 23-04-2016 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PANTHER PTHR30244:SF1 222 384 2.0E-122 T 23-04-2016 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Gene3D G3DSA:1.20.1330.10 287 341 5.9E-58 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS01265 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Gene3D G3DSA:1.20.1330.10 54 172 5.9E-58 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 SUPERFAMILY SSF55874 8 216 9.69E-64 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 96 113 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 78 95 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 193 211 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 175 192 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 8 28 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 123 145 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 29 51 9.1E-60 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 Gene3D G3DSA:3.30.565.10 8 246 5.1E-80 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PANTHER PTHR11528 2 635 0.0 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 Pfam PF00183 Hsp90 protein 221 635 6.4E-130 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 632 32.305 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PIRSF PIRSF002583 2 638 2.7E-211 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 23-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 SUPERFAMILY SSF110942 520 632 8.76E-37 T 23-04-2016 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 186 7.3E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 SUPERFAMILY SSF54211 239 493 8.34E-97 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 PANTHER PTHR11528:SF44 2 635 0.0 T 23-04-2016 THIMO_RS14470 6a22d378d32541b95ef64380f75f287d 639 SMART SM00387 30 187 3.6E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS07785 5950aee21595e9dcccc61d049a140784 171 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 2 131 3.6E-16 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS07785 5950aee21595e9dcccc61d049a140784 171 Pfam PF01814 Hemerythrin HHE cation binding domain 2 131 1.3E-6 T 23-04-2016 IPR012312 Haemerythrin-like THIMO_RS07785 5950aee21595e9dcccc61d049a140784 171 SUPERFAMILY SSF47188 1 131 3.53E-19 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS07785 5950aee21595e9dcccc61d049a140784 171 ProSitePatterns PS00550 Hemerythrin family signature. 61 84 - T 23-04-2016 IPR016131 Haemerythrin, iron-binding site GO:0046872 THIMO_RS07785 5950aee21595e9dcccc61d049a140784 171 Gene3D G3DSA:1.20.120.50 1 131 2.9E-19 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 Pfam PF01380 SIS domain 55 187 6.9E-29 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 PANTHER PTHR11911 190 336 1.2E-42 T 23-04-2016 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 SMART SM00116 225 273 2.3E-5 T 23-04-2016 IPR000644 CBS domain THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 SMART SM00116 290 338 2.6 T 23-04-2016 IPR000644 CBS domain THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 Gene3D G3DSA:3.10.580.10 211 336 2.0E-39 T 23-04-2016 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 60 329 2.6E-107 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 PIRSF PIRSF004692 11 339 3.6E-129 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 Pfam PF00571 CBS domain 285 336 3.5E-5 T 23-04-2016 IPR000644 CBS domain THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 Pfam PF00571 CBS domain 216 272 1.3E-8 T 23-04-2016 IPR000644 CBS domain THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 Gene3D G3DSA:3.40.50.10490 28 210 9.7E-50 T 23-04-2016 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 SUPERFAMILY SSF53697 29 336 2.89E-65 T 23-04-2016 THIMO_RS13140 61bec7091609ae1ecb3f687b34a1f034 339 PANTHER PTHR11911:SF90 190 336 1.2E-42 T 23-04-2016 THIMO_RS02370 c3efe9fc3d4f69c96ba0c89739628a11 180 SUPERFAMILY SSF52540 4 170 6.61E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02370 c3efe9fc3d4f69c96ba0c89739628a11 180 PIRSF PIRSF006135 1 172 9.8E-53 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 THIMO_RS02370 c3efe9fc3d4f69c96ba0c89739628a11 180 Gene3D G3DSA:3.40.50.300 4 170 1.5E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02370 c3efe9fc3d4f69c96ba0c89739628a11 180 PANTHER PTHR34848 4 172 8.4E-70 T 23-04-2016 THIMO_RS02370 c3efe9fc3d4f69c96ba0c89739628a11 180 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 168 4.4E-56 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 THIMO_RS03550 65c0964f52c8241a039c65f35922a444 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 9 151 2.1E-44 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 THIMO_RS03550 65c0964f52c8241a039c65f35922a444 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 31.586 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 THIMO_RS03550 65c0964f52c8241a039c65f35922a444 152 PANTHER PTHR11241 7 152 4.1E-45 T 23-04-2016 THIMO_RS03550 65c0964f52c8241a039c65f35922a444 152 Gene3D G3DSA:2.70.40.10 7 151 1.7E-47 T 23-04-2016 IPR029054 dUTPase-like THIMO_RS03550 65c0964f52c8241a039c65f35922a444 152 SUPERFAMILY SSF51283 5 151 1.83E-48 T 23-04-2016 IPR029054 dUTPase-like THIMO_RS03550 65c0964f52c8241a039c65f35922a444 152 Pfam PF00692 dUTPase 18 150 1.0E-34 T 23-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF56024 522 701 3.81E-64 T 23-04-2016 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Gene3D G3DSA:3.30.870.10 336 521 6.0E-68 T 23-04-2016 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 PANTHER PTHR30218 24 724 0.0 T 23-04-2016 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Gene3D G3DSA:3.30.870.10 522 702 1.2E-66 T 23-04-2016 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Gene3D G3DSA:3.30.1840.10 133 322 1.3E-56 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Pfam PF13090 Polyphosphate kinase C-terminal domain 352 697 1.2E-142 T 23-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF56024 345 517 1.16E-49 T 23-04-2016 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Hamap MF_00347 Polyphosphate kinase [ppk]. 28 704 29.129 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 PANTHER PTHR30218:SF0 24 724 0.0 T 23-04-2016 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 31 698 3.1E-234 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF140356 27 130 6.15E-37 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 PIRSF PIRSF015589 11 716 9.8E-269 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Pfam PF13089 Polyphosphate kinase N-terminal domain 31 136 3.2E-37 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 Pfam PF02503 Polyphosphate kinase middle domain 149 342 7.6E-55 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 THIMO_RS13875 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF143724 133 334 1.31E-54 T 23-04-2016 THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 Gene3D G3DSA:1.10.860.10 24 125 6.6E-37 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 SMART SM00382 219 417 3.0E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 Pfam PF03796 DnaB-like helicase C terminal domain 202 457 8.3E-120 T 23-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 458 3.8E-177 T 23-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 Pfam PF00772 DnaB-like helicase N terminal domain 24 125 4.9E-34 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 SUPERFAMILY SSF48024 22 133 9.29E-37 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 PANTHER PTHR30153 8 467 7.9E-212 T 23-04-2016 THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 SUPERFAMILY SSF52540 200 271 1.36E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 SUPERFAMILY SSF52540 298 450 1.36E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07240 6f5151ff7349c84b4610e572f1dc8c29 468 Gene3D G3DSA:3.40.50.300 187 458 1.1E-109 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 PIRSF PIRSF001589 1 427 1.7E-49 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 SUPERFAMILY SSF52402 54 203 1.56E-38 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 SUPERFAMILY SSF52402 300 391 1.56E-38 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 PANTHER PTHR11772 295 390 9.2E-43 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 PANTHER PTHR11772 8 207 9.2E-43 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 Pfam PF00733 Asparagine synthase 64 400 7.5E-46 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 PANTHER PTHR11772:SF10 295 390 9.2E-43 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 PANTHER PTHR11772:SF10 8 207 9.2E-43 T 23-04-2016 THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 Gene3D G3DSA:3.40.50.620 299 392 1.6E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04760 c49d91ae1d2f9b45a51cacfc59e119d1 436 Gene3D G3DSA:3.40.50.620 56 201 1.6E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS18365 763fe71cbe13e2a866cf3e31ae9da123 178 Gene3D G3DSA:3.40.50.1450 12 157 3.2E-28 T 23-04-2016 IPR023430 Peptidase HybD-like domain THIMO_RS18365 763fe71cbe13e2a866cf3e31ae9da123 178 PANTHER PTHR30302 8 170 2.9E-25 T 23-04-2016 THIMO_RS18365 763fe71cbe13e2a866cf3e31ae9da123 178 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 14 154 2.4E-23 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS18365 763fe71cbe13e2a866cf3e31ae9da123 178 SUPERFAMILY SSF53163 12 157 6.67E-30 T 23-04-2016 IPR023430 Peptidase HybD-like domain THIMO_RS18365 763fe71cbe13e2a866cf3e31ae9da123 178 Pfam PF01750 Hydrogenase maturation protease 32 151 5.4E-5 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1126 0.0 T 23-04-2016 IPR018667 Domain of unknown function DUF2126 THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 Pfam PF01841 Transglutaminase-like superfamily 130 246 2.0E-20 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 83 1.6E-26 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 SUPERFAMILY SSF54001 8 337 7.57E-70 T 23-04-2016 THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 SMART SM00460 172 248 4.2E-19 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 PANTHER PTHR33490:SF1 1 498 1.1E-248 T 23-04-2016 THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 Gene3D G3DSA:3.90.260.10 175 249 3.0E-9 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS02565 b91330b29faf08ea5aaec607fdac80f4 1131 PANTHER PTHR33490 1 498 1.1E-248 T 23-04-2016 THIMO_RS05865 e62128ff4053b2e0a11eebe5e1990dae 249 SUPERFAMILY SSF52402 21 242 6.16E-47 T 23-04-2016 THIMO_RS05865 e62128ff4053b2e0a11eebe5e1990dae 249 PANTHER PTHR11807 1 246 2.4E-115 T 23-04-2016 THIMO_RS05865 e62128ff4053b2e0a11eebe5e1990dae 249 PANTHER PTHR11807:SF24 1 246 2.4E-115 T 23-04-2016 THIMO_RS05865 e62128ff4053b2e0a11eebe5e1990dae 249 Pfam PF01171 PP-loop family 35 203 2.2E-15 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal THIMO_RS05865 e62128ff4053b2e0a11eebe5e1990dae 249 Gene3D G3DSA:3.40.50.620 23 199 2.7E-16 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05865 e62128ff4053b2e0a11eebe5e1990dae 249 PIRSF PIRSF004976 4 247 1.8E-55 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 SUPERFAMILY SSF53383 22 367 6.4E-80 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 PANTHER PTHR11751 14 367 9.7E-96 T 23-04-2016 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 17 366 1.3E-103 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 Gene3D G3DSA:3.90.1150.10 271 368 1.7E-18 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 Pfam PF00155 Aminotransferase class I and II 39 361 5.3E-50 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 11 368 60.541 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 Gene3D G3DSA:3.40.640.10 52 270 1.4E-68 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS06240 2ba6a304ad066026e13f57e912ec806f 370 PANTHER PTHR11751:SF347 14 367 9.7E-96 T 23-04-2016 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 36 211 2.3E-77 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 Gene3D G3DSA:1.10.286.10 34 79 1.0E-17 T 23-04-2016 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 PANTHER PTHR11109 34 212 3.8E-111 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 138 148 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 29 211 38.642 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 90 106 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 Gene3D G3DSA:3.30.1130.10 83 211 2.8E-63 T 23-04-2016 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 Pfam PF01227 GTP cyclohydrolase I 35 210 5.6E-77 T 23-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08595 0cae36374657c42c7201ecf2ab970a22 212 SUPERFAMILY SSF55620 23 211 1.26E-80 T 23-04-2016 THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 12 236 39.129 T 23-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 SUPERFAMILY SSF53955 64 234 1.01E-58 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 PANTHER PTHR30400:SF0 5 241 2.5E-84 T 23-04-2016 THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 16 233 7.4E-73 T 23-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 Pfam PF00912 Transglycosylase 67 230 2.0E-49 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 Gene3D G3DSA:1.10.3810.10 67 234 9.5E-58 T 23-04-2016 THIMO_RS13840 f366d3df7e61ee67f5ba559ae635de47 242 PANTHER PTHR30400 5 241 2.5E-84 T 23-04-2016 THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 SMART SM00448 7 123 4.7E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 PANTHER PTHR26402:SF563 7 161 9.4E-29 T 23-04-2016 THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 Gene3D G3DSA:3.30.450.20 147 271 4.7E-21 T 23-04-2016 THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 157 272 8.3E-13 T 23-04-2016 IPR000014 PAS domain THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 Pfam PF13426 PAS domain 168 272 6.2E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 SUPERFAMILY SSF55785 147 272 7.89E-20 T 23-04-2016 IPR000014 PAS domain THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 Gene3D G3DSA:3.40.50.2300 5 137 7.5E-32 T 23-04-2016 THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 SUPERFAMILY SSF52172 5 156 2.85E-33 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 SMART SM00091 156 222 3.3E-10 T 23-04-2016 IPR000014 PAS domain THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 PANTHER PTHR26402 7 161 9.4E-29 T 23-04-2016 THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 SMART SM00086 232 274 4.1E-5 T 23-04-2016 IPR001610 PAC motif THIMO_RS00445 1f39fccc2005833e5e5c3e780019b4bb 299 Pfam PF00072 Response regulator receiver domain 10 123 1.7E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 Pfam PF01521 Iron-sulphur cluster biosynthesis 12 112 2.1E-18 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 116 1.1E-36 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 Gene3D G3DSA:2.60.300.12 12 106 7.0E-32 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 98 115 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 117 34.469 T 23-04-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 SUPERFAMILY SSF89360 12 105 1.86E-30 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS04900 c8f0cd1829d8830fc9731c05da3c6ece 117 PANTHER PTHR10072 12 116 5.8E-45 T 23-04-2016 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 184 1.5E-21 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 SUPERFAMILY SSF88946 11 110 6.67E-18 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 Pfam PF08281 Sigma-70, region 4 131 183 6.2E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 Pfam PF04542 Sigma-70 region 2 34 99 4.8E-11 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 Gene3D G3DSA:1.10.1740.10 18 114 1.4E-16 T 23-04-2016 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 PANTHER PTHR30173 3 187 1.8E-35 T 23-04-2016 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 PANTHER PTHR30173:SF3 3 187 1.8E-35 T 23-04-2016 THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 Gene3D G3DSA:1.10.10.10 128 189 2.8E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02125 a4152fbc6c1286c19540b10338cd3650 191 SUPERFAMILY SSF88659 127 187 6.92E-12 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS08590 8549d94a8bab1935c946d3fe6bd0e38c 280 Gene3D G3DSA:3.40.50.150 51 176 1.8E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08590 8549d94a8bab1935c946d3fe6bd0e38c 280 SUPERFAMILY SSF53335 10 278 8.28E-58 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08590 8549d94a8bab1935c946d3fe6bd0e38c 280 Pfam PF08241 Methyltransferase domain 71 169 5.3E-22 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS08590 8549d94a8bab1935c946d3fe6bd0e38c 280 PANTHER PTHR10108 51 270 1.5E-30 T 23-04-2016 THIMO_RS08590 8549d94a8bab1935c946d3fe6bd0e38c 280 Gene3D G3DSA:1.10.287.840 7 42 5.4E-39 T 23-04-2016 IPR023143 Mycolic acid cyclopropane synthase-like domain UniPathway: UPA00530 THIMO_RS08590 8549d94a8bab1935c946d3fe6bd0e38c 280 Gene3D G3DSA:1.10.287.840 177 270 5.4E-39 T 23-04-2016 IPR023143 Mycolic acid cyclopropane synthase-like domain UniPathway: UPA00530 THIMO_RS08680 daef55be9b37e7afca6c8412e72603d1 78 PIRSF PIRSF037031 1 78 4.6E-28 T 23-04-2016 IPR005243 Redox-active disulphide protein 2 THIMO_RS08680 daef55be9b37e7afca6c8412e72603d1 78 Pfam PF13192 Thioredoxin domain 3 76 7.6E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08680 daef55be9b37e7afca6c8412e72603d1 78 SUPERFAMILY SSF52833 4 76 3.13E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08680 daef55be9b37e7afca6c8412e72603d1 78 Gene3D G3DSA:3.40.30.10 3 76 3.2E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08680 daef55be9b37e7afca6c8412e72603d1 78 PANTHER PTHR36450:SF1 2 78 3.7E-25 T 23-04-2016 THIMO_RS08680 daef55be9b37e7afca6c8412e72603d1 78 PANTHER PTHR36450 2 78 3.7E-25 T 23-04-2016 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 1 279 3.1E-144 T 23-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 PIRSF PIRSF029271 1 279 2.4E-145 T 23-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 PANTHER PTHR31829 1 279 1.4E-206 T 23-04-2016 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 Pfam PF01680 SOR/SNZ family 1 197 4.8E-103 T 23-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 1 279 48.625 T 23-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 Gene3D G3DSA:3.20.20.70 9 145 9.4E-48 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 Gene3D G3DSA:3.20.20.70 177 263 9.4E-48 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 SUPERFAMILY SSF51366 3 248 1.65E-64 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS04170 f74d680312c32dedf128e0b8b4b0e763 279 ProSitePatterns PS01235 PdxS/SNZ family signature. 190 208 - T 23-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 448 1.6E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 448 468 1.6E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 PANTHER PTHR32071 1 476 9.8E-178 T 23-04-2016 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 Pfam PF02954 Bacterial regulatory protein, Fis family 429 465 4.4E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 SUPERFAMILY SSF52540 138 379 1.89E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 PANTHER PTHR32071:SF36 1 476 9.8E-178 T 23-04-2016 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 SUPERFAMILY SSF46689 420 468 2.87E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 SMART SM00382 158 302 2.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 Gene3D G3DSA:3.40.50.300 137 310 4.6E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 Gene3D G3DSA:1.10.10.60 416 468 1.7E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 Gene3D G3DSA:1.10.8.60 311 385 1.6E-20 T 23-04-2016 THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 Pfam PF06490 Flagellar regulatory protein FleQ 1 115 1.4E-11 T 23-04-2016 IPR010518 Flagellar regulatory FleQ THIMO_RS01280 e1ac3acf5f2837c11eb5fa447457ab39 476 Pfam PF00158 Sigma-54 interaction domain 138 305 3.7E-73 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 SUPERFAMILY SSF55073 354 513 8.63E-43 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 Gene3D G3DSA:3.30.450.20 217 336 6.3E-13 T 23-04-2016 THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 Pfam PF13188 PAS domain 225 267 2.3E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 SUPERFAMILY SSF55785 215 336 9.42E-11 T 23-04-2016 IPR000014 PAS domain THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 Gene3D G3DSA:3.30.70.270 350 513 2.8E-51 T 23-04-2016 THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 Pfam PF00672 HAMP domain 140 206 2.6E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 PANTHER PTHR10799:SF774 382 507 2.5E-36 T 23-04-2016 THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 348 511 8.3E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 SMART SM00267 338 512 3.9E-57 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 225 343 1.6E-9 T 23-04-2016 IPR000014 PAS domain THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 Pfam PF00990 Diguanylate cyclase, GGDEF domain 349 508 1.2E-42 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS15490 37e02eb9eb7535d7f17b5502cc4fc145 529 PANTHER PTHR10799 382 507 2.5E-36 T 23-04-2016 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PANTHER PTHR30523:SF0 1 929 0.0 T 23-04-2016 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 Gene3D G3DSA:1.20.1440.90 282 414 2.1E-26 T 23-04-2016 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 SUPERFAMILY SSF51621 11 929 1.88E-287 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 578 590 - T 23-04-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 618 647 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 193 209 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 140 153 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 253 268 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 411 431 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 754 780 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 596 3.6E-60 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 Pfam PF00311 Phosphoenolpyruvate carboxylase 139 929 8.9E-280 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 141 152 - T 23-04-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 PANTHER PTHR30523 1 929 0.0 T 23-04-2016 THIMO_RS06040 731f92a41adfc12bb8fc68fc8b07be47 929 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 929 17.164 T 23-04-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 SMART SM00228 279 361 1.2E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 SMART SM00228 385 462 0.007 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 53 466 4.4E-142 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PANTHER PTHR22939 50 366 3.0E-141 T 23-04-2016 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 Pfam PF13365 Trypsin-like peptidase domain 105 240 1.3E-33 T 23-04-2016 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.30.42.10 406 467 3.3E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 SUPERFAMILY SSF50494 52 275 7.14E-65 T 23-04-2016 IPR009003 Peptidase S1, PA clan THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 319 331 3.4E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 176 200 3.4E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 233 250 3.4E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 136 156 3.4E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 115 127 3.4E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 211 228 3.4E-56 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.30.42.10 281 367 4.8E-26 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 PANTHER PTHR22939:SF101 50 366 3.0E-141 T 23-04-2016 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 SUPERFAMILY SSF50156 237 361 2.37E-25 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.40.10.10 52 167 7.4E-35 T 23-04-2016 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 Pfam PF13180 PDZ domain 282 366 8.8E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.40.10.10 168 280 8.7E-46 T 23-04-2016 THIMO_RS00620 f293d358cc013d34d968e70ebc74689b 470 SUPERFAMILY SSF50156 399 468 5.39E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 16 466 1.6E-154 T 23-04-2016 IPR012831 Precorrin 3B synthase CobZ THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 Pfam PF00890 FAD binding domain 16 447 2.4E-33 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 PANTHER PTHR11632:SF47 16 466 3.8E-129 T 23-04-2016 THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 SUPERFAMILY SSF51905 16 241 8.16E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 SUPERFAMILY SSF51905 400 466 8.16E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 Gene3D G3DSA:3.90.700.10 262 398 3.3E-16 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 SUPERFAMILY SSF56425 272 406 6.63E-19 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 PANTHER PTHR11632 16 466 3.8E-129 T 23-04-2016 THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 Gene3D G3DSA:3.50.50.60 402 466 1.6E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02235 ed0c0c21c21f7ef7727da4c007ce63c5 469 Gene3D G3DSA:3.50.50.60 16 244 1.6E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF55008 61 129 3.93E-19 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 205 800 6.8E-183 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 63 124 8.2E-10 T 23-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PANTHER PTHR24093 1 127 2.9E-275 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PANTHER PTHR24093 144 801 2.9E-275 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Gene3D G3DSA:3.40.1110.10 507 617 5.5E-22 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF55008 1 60 1.27E-18 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF81665 739 764 6.93E-14 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF81665 391 486 6.93E-14 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF81665 256 294 6.93E-14 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 713 725 3.2E-28 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 340 354 3.2E-28 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 690 709 3.2E-28 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 626 3.2E-28 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 492 506 3.2E-28 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 637 647 3.2E-28 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF81653 294 390 3.92E-29 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 ProSitePatterns PS01047 Heavy-metal-associated domain. 66 95 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Gene3D G3DSA:3.30.70.100 1 59 2.4E-22 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Gene3D G3DSA:3.30.70.100 62 128 2.1E-22 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 494 500 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Pfam PF00403 Heavy-metal-associated domain 1 56 9.6E-15 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Pfam PF00403 Heavy-metal-associated domain 66 124 2.2E-13 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 262 769 1.1E-89 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF56784 490 510 3.24E-61 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 SUPERFAMILY SSF56784 548 797 3.24E-61 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Pfam PF00122 E1-E2 ATPase 261 483 4.5E-67 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Gene3D G3DSA:2.70.150.10 223 391 3.5E-33 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Pfam PF00702 haloacid dehalogenase-like hydrolase 488 703 1.5E-50 T 23-04-2016 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 223 799 3.9E-193 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Gene3D G3DSA:3.40.50.1000 618 759 2.3E-59 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS16140 ba3e2b01eda86467e4a14ca4235458e4 827 Gene3D G3DSA:3.40.50.1000 463 506 2.3E-59 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS16525 33d37a0d1bc2fad539a61b7c213ff764 250 Pfam PF08808 RES domain 62 211 5.5E-27 T 23-04-2016 IPR014914 RES domain THIMO_RS16525 33d37a0d1bc2fad539a61b7c213ff764 250 SMART SM00953 70 207 3.6E-25 T 23-04-2016 IPR014914 RES domain THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 PANTHER PTHR30303 16 348 7.4E-156 T 23-04-2016 THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 62 162 6.5E-18 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 174 325 7.9E-29 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 Gene3D G3DSA:3.30.1330.10 31 164 2.5E-26 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 Gene3D G3DSA:3.90.650.10 172 323 2.7E-30 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 18 348 4.3E-141 T 23-04-2016 IPR011854 Hydrogenase expression/formation protein HypE THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 SUPERFAMILY SSF56042 168 344 1.36E-48 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 PIRSF PIRSF005644 15 348 8.3E-126 T 23-04-2016 IPR011854 Hydrogenase expression/formation protein HypE THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 SUPERFAMILY SSF55326 20 165 6.13E-34 T 23-04-2016 THIMO_RS15550 0c6816056fe632489e2df554e5c352b0 348 PANTHER PTHR30303:SF0 16 348 7.4E-156 T 23-04-2016 THIMO_RS15700 c3882a3ca7adbf383156c152aabb4a76 268 SUPERFAMILY SSF56281 6 242 1.44E-26 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15700 c3882a3ca7adbf383156c152aabb4a76 268 Gene3D G3DSA:3.60.15.10 3 229 5.5E-23 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15700 c3882a3ca7adbf383156c152aabb4a76 268 Pfam PF12706 Beta-lactamase superfamily domain 34 218 9.2E-11 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS15700 c3882a3ca7adbf383156c152aabb4a76 268 SMART SM00849 20 217 6.7E-4 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00930 4cff6ea0bf720b656604882b189609ba 185 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 159 5.0E-37 T 23-04-2016 IPR018639 Domain of unknown function DUF2062 THIMO_RS00930 4cff6ea0bf720b656604882b189609ba 185 PANTHER PTHR40547:SF1 1 174 8.8E-28 T 23-04-2016 THIMO_RS00930 4cff6ea0bf720b656604882b189609ba 185 PANTHER PTHR40547 1 174 8.8E-28 T 23-04-2016 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 PRINTS PR00690 Adhesin family signature 233 251 3.7E-5 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 PRINTS PR00690 Adhesin family signature 182 203 3.7E-5 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 PRINTS PR00690 Adhesin family signature 50 63 3.7E-5 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 Pfam PF01297 Zinc-uptake complex component A periplasmic 22 274 1.8E-59 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 Gene3D G3DSA:3.40.50.1980 184 285 2.1E-31 T 23-04-2016 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 PANTHER PTHR30477 2 278 2.0E-70 T 23-04-2016 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 Gene3D G3DSA:3.40.50.1980 15 182 2.5E-49 T 23-04-2016 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 PANTHER PTHR30477:SF1 2 278 2.0E-70 T 23-04-2016 THIMO_RS12015 ef9a52176a11218884680de50b2a60f8 286 SUPERFAMILY SSF53807 19 284 9.81E-79 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 PANTHER PTHR10434:SF8 4 188 2.2E-42 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 PANTHER PTHR10434:SF8 205 242 2.2E-42 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 SUPERFAMILY SSF69593 39 244 1.1E-26 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 Pfam PF01553 Acyltransferase 68 177 5.6E-18 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 PANTHER PTHR10434 4 188 2.2E-42 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 PANTHER PTHR10434 205 242 2.2E-42 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 Gene3D G3DSA:3.40.1130.10 69 236 3.9E-6 T 23-04-2016 THIMO_RS06980 a994a9bbfc0a2c136170f4b3cd7b2137 274 SMART SM00563 69 180 2.3E-28 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 THIMO_RS00400 8569304f7b93e2b47f1dfdf8f5cfc516 201 PANTHER PTHR39555:SF1 1 197 2.3E-49 T 23-04-2016 THIMO_RS00400 8569304f7b93e2b47f1dfdf8f5cfc516 201 PANTHER PTHR39555 1 197 2.3E-49 T 23-04-2016 THIMO_RS00400 8569304f7b93e2b47f1dfdf8f5cfc516 201 Pfam PF04350 Pilus assembly protein, PilO 50 196 3.7E-53 T 23-04-2016 IPR007445 Pilus assembly protein, PilO THIMO_RS00400 8569304f7b93e2b47f1dfdf8f5cfc516 201 Gene3D G3DSA:1.10.287.540 58 94 3.7E-20 T 23-04-2016 IPR023218 UPF0291 structural domain THIMO_RS00400 8569304f7b93e2b47f1dfdf8f5cfc516 201 Gene3D G3DSA:3.30.70.60 95 199 2.0E-33 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 THIMO_RS00400 8569304f7b93e2b47f1dfdf8f5cfc516 201 PIRSF PIRSF016482 1 199 6.7E-63 T 23-04-2016 IPR007445 Pilus assembly protein, PilO THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Pfam PF00563 EAL domain 505 740 5.4E-68 T 23-04-2016 IPR001633 EAL domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Pfam PF13426 PAS domain 213 314 1.6E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Pfam PF13426 PAS domain 94 192 0.0074 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 PANTHER PTHR10799:SF774 215 599 2.3E-82 T 23-04-2016 THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Gene3D G3DSA:3.30.70.270 328 496 1.9E-50 T 23-04-2016 THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Pfam PF00990 Diguanylate cyclase, GGDEF domain 327 484 1.1E-41 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 201 323 3.5E-17 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 PANTHER PTHR10799 215 599 2.3E-82 T 23-04-2016 THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SMART SM00052 499 745 5.0E-96 T 23-04-2016 IPR001633 EAL domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SUPERFAMILY SSF141868 504 750 5.49E-77 T 23-04-2016 IPR001633 EAL domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SUPERFAMILY SSF55785 207 314 7.48E-23 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Gene3D G3DSA:3.30.450.20 211 314 1.1E-23 T 23-04-2016 THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SMART SM00091 202 269 4.7E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SMART SM00091 82 148 0.03 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SMART SM00267 316 489 4.7E-52 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SUPERFAMILY SSF55785 74 190 7.03E-11 T 23-04-2016 IPR000014 PAS domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 SUPERFAMILY SSF55073 332 489 4.32E-45 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 326 487 5.2E-37 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Gene3D G3DSA:3.30.450.20 75 194 7.0E-12 T 23-04-2016 THIMO_RS00510 fbce952caab1328f607a8061e08cd5ce 800 Gene3D G3DSA:3.20.20.450 501 747 2.6E-84 T 23-04-2016 IPR001633 EAL domain THIMO_RS16070 3b1926fb9626c0d67ad4e04dfcaab9d2 210 PANTHER PTHR30625:SF0 1 197 4.2E-53 T 23-04-2016 THIMO_RS16070 3b1926fb9626c0d67ad4e04dfcaab9d2 210 Pfam PF01618 MotA/TolQ/ExbB proton channel family 68 187 4.9E-32 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 THIMO_RS16070 3b1926fb9626c0d67ad4e04dfcaab9d2 210 PANTHER PTHR30625 1 197 4.2E-53 T 23-04-2016 THIMO_RS11705 8a002da8a4f10da22e608ec62cd703f0 381 PANTHER PTHR31384:SF34 48 305 3.5E-54 T 23-04-2016 THIMO_RS11705 8a002da8a4f10da22e608ec62cd703f0 381 Gene3D G3DSA:3.40.630.30 179 326 1.8E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11705 8a002da8a4f10da22e608ec62cd703f0 381 PANTHER PTHR31384 48 305 3.5E-54 T 23-04-2016 THIMO_RS11705 8a002da8a4f10da22e608ec62cd703f0 381 SUPERFAMILY SSF55729 179 353 3.36E-38 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11705 8a002da8a4f10da22e608ec62cd703f0 381 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 10 378 4.6E-154 T 23-04-2016 IPR007434 Peptidogalycan biosysnthesis/recognition THIMO_RS08100 b082800efc084d58884c0e2d5cc08b15 415 PANTHER PTHR23409:SF18 66 410 9.6E-169 T 23-04-2016 THIMO_RS08100 b082800efc084d58884c0e2d5cc08b15 415 PANTHER PTHR23409 66 410 9.6E-169 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 THIMO_RS08100 b082800efc084d58884c0e2d5cc08b15 415 PIRSF PIRSF000355 69 415 8.0E-136 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 THIMO_RS08100 b082800efc084d58884c0e2d5cc08b15 415 SUPERFAMILY SSF47240 69 388 7.16E-95 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS08100 b082800efc084d58884c0e2d5cc08b15 415 Pfam PF00268 Ribonucleotide reductase, small chain 95 382 4.4E-80 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 THIMO_RS08100 b082800efc084d58884c0e2d5cc08b15 415 Gene3D G3DSA:1.10.620.20 83 389 3.1E-106 T 23-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Pfam PF00462 Glutaredoxin 173 231 6.5E-17 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PRINTS PR00160 Glutaredoxin signature 228 241 2.7E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PRINTS PR00160 Glutaredoxin signature 173 191 2.7E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PRINTS PR00160 Glutaredoxin signature 214 227 2.7E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 241 9.8E-32 T 23-04-2016 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PANTHER PTHR10430 7 168 1.6E-89 T 23-04-2016 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Pfam PF08534 Redoxin 7 160 1.0E-31 T 23-04-2016 IPR013740 Redoxin GO:0016491 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Gene3D G3DSA:3.40.30.10 172 241 1.0E-22 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 SUPERFAMILY SSF52833 6 240 6.9E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PANTHER PTHR10430:SF19 7 168 1.6E-89 T 23-04-2016 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 THIMO_RS04950 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Gene3D G3DSA:3.40.30.10 5 163 5.5E-61 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS17140 7e778e77da248732d028489500cfd959 178 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 11 161 1.6E-45 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 11 157 6.5E-48 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 SUPERFAMILY SSF53098 10 163 1.01E-45 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 Gene3D G3DSA:3.30.420.10 10 162 8.3E-55 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 90 106 2.8E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 12 25 2.8E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 145 157 2.8E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 68 84 2.8E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 114 133 2.8E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 120 154 - T 23-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 PANTHER PTHR30194 3 176 4.6E-63 T 23-04-2016 THIMO_RS17140 7e778e77da248732d028489500cfd959 178 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 9 160 43.082 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 Pfam PF13414 TPR repeat 80 117 9.5E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 Pfam PF14559 Tetratricopeptide repeat 118 175 1.4E-5 T 23-04-2016 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 SUPERFAMILY SSF48452 73 175 5.93E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 SMART SM00028 72 105 1.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 SMART SM00028 140 173 190.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 SMART SM00028 106 139 23.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 PANTHER PTHR23083 78 174 2.3E-14 T 23-04-2016 THIMO_RS15575 b7d1adaac02484a0aec9596de9999713 189 Gene3D G3DSA:1.25.40.10 71 174 7.3E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 41 - T 23-04-2016 IPR010916 TonB box, conserved site THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 Gene3D G3DSA:2.170.130.10 26 156 4.4E-5 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 Pfam PF00593 TonB dependent receptor 487 750 6.3E-25 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 PANTHER PTHR32552 3 449 1.1E-17 T 23-04-2016 THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 PANTHER PTHR32552 485 753 1.1E-17 T 23-04-2016 THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 Gene3D G3DSA:2.40.170.20 174 753 1.7E-59 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS15130 f1af913e13efbb07b591809105d79e74 753 SUPERFAMILY SSF56935 23 753 1.07E-72 T 23-04-2016 THIMO_RS07590 d2ec355de131cd369084cf84eed52c50 167 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 2 167 6.1E-69 T 23-04-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria THIMO_RS07590 d2ec355de131cd369084cf84eed52c50 167 PANTHER PTHR38596 2 164 2.2E-75 T 23-04-2016 THIMO_RS07590 d2ec355de131cd369084cf84eed52c50 167 PANTHER PTHR38596:SF1 2 164 2.2E-75 T 23-04-2016 THIMO_RS07590 d2ec355de131cd369084cf84eed52c50 167 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 1.0E-32 T 23-04-2016 IPR005134 Uncharacterised protein family UPF0114 THIMO_RS07590 d2ec355de131cd369084cf84eed52c50 167 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 167 83.766 T 23-04-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 SUPERFAMILY SSF89550 5 262 1.79E-17 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF01336 OB-fold nucleic acid binding domain 997 1073 1.3E-9 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 316 730 2.0E-177 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF02811 PHP domain 7 171 2.4E-43 T 23-04-2016 IPR004013 PHP domain GO:0003824 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF14579 Helix-hairpin-helix motif 804 893 1.6E-26 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Gene3D G3DSA:1.10.150.280 832 877 4.2E-4 T 23-04-2016 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 PANTHER PTHR32294 2 1166 0.0 T 23-04-2016 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 SMART SM00481 6 73 1.8E-23 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Gene3D G3DSA:3.20.20.140 5 256 2.1E-25 T 23-04-2016 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 PANTHER PTHR32294:SF0 2 1166 0.0 T 23-04-2016 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1032 0.0 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS10955 917fa119b230349fb19fc73a6eaac22e 1196 Gene3D G3DSA:2.40.50.140 994 1077 1.1E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13030 f9fae4ef408d8e99c7938b4ea13d2f1a 121 Pfam PF09862 Protein of unknown function (DUF2089) 5 114 1.7E-21 T 23-04-2016 IPR018658 Protein of unknown function DUF2089 THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 PANTHER PTHR12532 1 241 1.6E-119 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 Pfam PF01709 Transcriptional regulator 5 237 4.3E-96 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:3.30.1270.10 82 134 5.3E-43 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:3.30.1270.10 212 247 5.3E-43 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:3.30.70.980 135 204 2.4E-25 T 23-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:1.10.10.200 1 79 9.3E-36 T 23-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 37.723 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 4.7E-101 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like THIMO_RS17135 c265520a67ec66dd3c753071cedf21cf 249 SUPERFAMILY SSF75625 3 246 8.37E-99 T 23-04-2016 IPR029072 YebC-like THIMO_RS00135 f2f9a5481b65c22d16b1fc0669fde1b1 134 SUPERFAMILY SSF88723 1 126 2.58E-20 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS00135 f2f9a5481b65c22d16b1fc0669fde1b1 134 Pfam PF01850 PIN domain 4 124 5.1E-16 T 23-04-2016 IPR002716 PIN domain THIMO_RS00135 f2f9a5481b65c22d16b1fc0669fde1b1 134 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 132 10.954 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS00135 f2f9a5481b65c22d16b1fc0669fde1b1 134 Gene3D G3DSA:3.40.50.1010 3 124 1.1E-7 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 PANTHER PTHR30221 86 362 1.5E-31 T 23-04-2016 THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 Gene3D G3DSA:3.30.70.100 245 321 7.4E-4 T 23-04-2016 THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 SMART SM00100 354 472 8.8E-16 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 Gene3D G3DSA:2.60.120.10 349 479 1.1E-23 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 Pfam PF00924 Mechanosensitive ion channel 127 322 2.5E-30 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 Pfam PF00027 Cyclic nucleotide-binding domain 373 458 2.7E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 SUPERFAMILY SSF51206 350 476 3.4E-24 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 Gene3D G3DSA:2.30.30.60 181 230 6.4E-16 T 23-04-2016 THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 SUPERFAMILY SSF82689 242 331 1.03E-10 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 THIMO_RS09150 998dbff8450f2dd2027933ca56ec1b04 511 SUPERFAMILY SSF50182 166 231 1.57E-15 T 23-04-2016 IPR010920 LSM domain THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 Gene3D G3DSA:1.10.940.10 3 156 2.9E-36 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 SUPERFAMILY SSF48013 3 155 7.59E-34 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 3 158 21.026 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 PANTHER PTHR11078 1 39 5.3E-36 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 PANTHER PTHR11078 65 171 5.3E-36 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 5 155 5.2E-36 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 THIMO_RS01010 5adde679216ffcf6bb02e101d74b8079 171 Pfam PF01029 NusB family 6 155 1.1E-29 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 THIMO_RS14620 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR04152 exosort_VPLPA: exosortase D, VPLPA-CTERM-specific 41 520 4.7E-145 T 23-04-2016 IPR026491 Exosortase D, VPLPA-CTERM-specific THIMO_RS14620 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR02602 8TM_EpsH: exosortase 39 276 7.1E-45 T 23-04-2016 IPR013426 Exosortase, EpsH THIMO_RS14620 fb751c035dd54fbf0cca114e2d7ba0b4 521 Pfam PF11984 Protein of unknown function (DUF3485) 318 514 1.7E-41 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI THIMO_RS14620 fb751c035dd54fbf0cca114e2d7ba0b4 521 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 25 278 1.4E-55 T 23-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS14620 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 185 277 1.8E-18 T 23-04-2016 IPR026392 Exosortase/Archaeosortase domain THIMO_RS14620 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 345 517 1.5E-33 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PANTHER PTHR11632 95 530 8.2E-114 T 23-04-2016 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 SUPERFAMILY SSF56425 322 444 1.5E-22 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Pfam PF00890 FAD binding domain 99 483 1.2E-71 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Gene3D G3DSA:3.90.700.10 328 440 1.7E-18 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 SUPERFAMILY SSF51905 92 339 1.38E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 SUPERFAMILY SSF51905 448 506 1.38E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 99 121 4.0E-5 T 23-04-2016 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 483 498 4.0E-5 T 23-04-2016 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Gene3D G3DSA:3.50.50.60 92 327 3.0E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Gene3D G3DSA:3.50.50.60 441 503 3.0E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 447 469 1.7E-9 T 23-04-2016 THIMO_RS01185 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 119 1.7E-9 T 23-04-2016 THIMO_RS10635 9d58786c2db361960fe1b9cbc18bd8a3 298 PANTHER PTHR10067 7 298 1.2E-96 T 23-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 THIMO_RS10635 9d58786c2db361960fe1b9cbc18bd8a3 298 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 57 289 2.0E-72 T 23-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 THIMO_RS10635 9d58786c2db361960fe1b9cbc18bd8a3 298 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 18 292 44.15 T 23-04-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 THIMO_RS10635 9d58786c2db361960fe1b9cbc18bd8a3 298 Pfam PF02666 Phosphatidylserine decarboxylase 71 289 2.4E-58 T 23-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 THIMO_RS08880 2beeaed2405f6bae010817af6b8def37 401 PANTHER PTHR30480 1 367 1.0E-86 T 23-04-2016 THIMO_RS08880 2beeaed2405f6bae010817af6b8def37 401 Pfam PF07075 Protein of unknown function (DUF1343) 24 400 1.2E-107 T 23-04-2016 IPR008302 Uncharacterised conserved protein UCP016719 THIMO_RS08880 2beeaed2405f6bae010817af6b8def37 401 PANTHER PTHR30480:SF3 1 367 1.0E-86 T 23-04-2016 THIMO_RS08880 2beeaed2405f6bae010817af6b8def37 401 PIRSF PIRSF016719 1 401 7.0E-99 T 23-04-2016 IPR008302 Uncharacterised conserved protein UCP016719 THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 SUPERFAMILY SSF52540 2 217 1.36E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 PANTHER PTHR24220:SF414 6 237 6.6E-90 T 23-04-2016 THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 PANTHER PTHR24220 6 237 6.6E-90 T 23-04-2016 THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 Pfam PF00005 ABC transporter 21 155 1.7E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 SMART SM00382 29 203 1.4E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14845 2b167a7d5ae24f2325e5cee162e934dd 293 Gene3D G3DSA:3.40.50.300 2 218 2.2E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 Pfam PF01872 RibD C-terminal domain 141 357 1.5E-50 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 Gene3D G3DSA:3.40.140.10 1 122 1.6E-32 T 23-04-2016 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 140 362 2.0E-63 T 23-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 PIRSF PIRSF006769 1 365 1.6E-126 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 PANTHER PTHR11079:SF10 1 202 6.5E-61 T 23-04-2016 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 PANTHER PTHR11079 1 202 6.5E-61 T 23-04-2016 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 SUPERFAMILY SSF53597 139 360 2.11E-59 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 44 82 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 SUPERFAMILY SSF53927 1 139 1.36E-45 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 1 359 8.5E-121 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 Gene3D G3DSA:3.40.430.10 123 361 3.4E-75 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain THIMO_RS01665 f37ae0a081c97b479675dd340cf025f4 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 93 1.4E-17 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 Gene3D G3DSA:3.40.50.300 355 478 1.5E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 Pfam PF13671 AAA domain 346 494 5.1E-35 T 23-04-2016 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 SUPERFAMILY SSF56112 17 314 3.06E-23 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 Gene3D G3DSA:3.40.50.1820 326 354 6.5E-4 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 Gene3D G3DSA:3.90.1200.10 131 325 1.6E-6 T 23-04-2016 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 SUPERFAMILY SSF52540 342 511 2.07E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 PANTHER PTHR12083:SF8 20 379 1.6E-129 T 23-04-2016 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 PANTHER PTHR12083:SF8 407 522 1.6E-129 T 23-04-2016 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 PANTHER PTHR12083 20 379 1.6E-129 T 23-04-2016 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 PANTHER PTHR12083 407 522 1.6E-129 T 23-04-2016 THIMO_RS11760 f1266820213651e035a5a8ecb96eb38d 525 Pfam PF01636 Phosphotransferase enzyme family 115 282 5.2E-7 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF53955 97 310 9.84E-73 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:1.10.3810.10 110 285 2.1E-69 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Pfam PF00912 Transglycosylase 109 283 6.6E-62 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF56601 265 287 3.86E-116 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF56601 689 823 3.86E-116 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF56601 473 660 3.86E-116 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF56601 316 367 3.86E-116 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Pfam PF00905 Penicillin binding protein transpeptidase domain 483 748 5.0E-27 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 PANTHER PTHR32282:SF5 32 364 6.6E-236 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 PANTHER PTHR32282:SF5 689 821 6.6E-236 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 PANTHER PTHR32282:SF5 472 662 6.6E-236 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:3.40.710.10 286 367 3.9E-126 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:3.40.710.10 473 819 3.9E-126 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:2.40.50.140 398 472 4.4E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 PANTHER PTHR32282 32 364 6.6E-236 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 PANTHER PTHR32282 689 821 6.6E-236 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 PANTHER PTHR32282 472 662 6.6E-236 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 119 783 1.1E-172 T 23-04-2016 THIMO_RS07655 928089e27c57bf159a7f66730885bb66 852 Pfam PF17092 Penicillin-binding protein OB-like domain 370 476 6.2E-26 T 23-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 SUPERFAMILY SSF53271 71 308 7.26E-64 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 203 315 6.4E-29 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 315 7.7E-118 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 Gene3D G3DSA:3.40.50.2020 162 290 4.5E-51 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 131 146 - T 23-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 6 123 2.6E-45 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 Gene3D G3DSA:3.40.50.2020 4 161 2.1E-69 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 SMART SM01400 6 123 1.2E-72 T 23-04-2016 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 PANTHER PTHR10210:SF41 3 315 1.4E-179 T 23-04-2016 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 PANTHER PTHR10210 3 315 1.4E-179 T 23-04-2016 THIMO_RS14895 36495f3f3e0958f52398f32f26416ca2 317 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 6 316 48.581 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 THIMO_RS15895 0e2dc1ae3511648bceee698e76491781 533 PANTHER PTHR23513:SF7 1 431 2.2E-137 T 23-04-2016 THIMO_RS15895 0e2dc1ae3511648bceee698e76491781 533 SUPERFAMILY SSF103473 16 402 4.84E-46 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS15895 0e2dc1ae3511648bceee698e76491781 533 PANTHER PTHR23513 1 431 2.2E-137 T 23-04-2016 THIMO_RS15895 0e2dc1ae3511648bceee698e76491781 533 Gene3D G3DSA:1.20.1250.20 237 400 1.0E-11 T 23-04-2016 THIMO_RS15895 0e2dc1ae3511648bceee698e76491781 533 Gene3D G3DSA:1.20.1250.20 18 201 1.8E-18 T 23-04-2016 THIMO_RS15895 0e2dc1ae3511648bceee698e76491781 533 Pfam PF05977 Transmembrane secretion effector 9 528 2.1E-175 T 23-04-2016 IPR010290 Transmembrane secretion effector THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 23-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 Gene3D G3DSA:3.40.50.720 181 356 3.5E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 5.6E-48 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 PIRSF PIRSF000445 1 423 3.6E-157 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 PANTHER PTHR21089 270 357 7.9E-129 T 23-04-2016 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 PANTHER PTHR21089 15 254 7.9E-129 T 23-04-2016 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 414 6.4E-135 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 415 6.3E-24 T 23-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 PANTHER PTHR21089:SF3 270 357 7.9E-129 T 23-04-2016 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 PANTHER PTHR21089:SF3 15 254 7.9E-129 T 23-04-2016 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 SUPERFAMILY SSF51735 161 313 2.16E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 SUPERFAMILY SSF69742 1 156 6.28E-48 T 23-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 SUPERFAMILY SSF69075 315 416 8.5E-26 T 23-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 4.1E-47 T 23-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS14875 e1b1601ffb39fa6d692f13dae7fb79f9 423 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 31.102 T 23-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 Gene3D G3DSA:1.25.20.10 51 410 1.5E-103 T 23-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 Pfam PF01464 Transglycosylase SLT domain 505 614 8.9E-30 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 SUPERFAMILY SSF48435 50 499 9.94E-116 T 23-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 Pfam PF14718 Soluble lytic murein transglycosylase L domain 430 494 7.6E-19 T 23-04-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 Gene3D G3DSA:1.10.530.10 496 648 2.8E-53 T 23-04-2016 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 523 551 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 Gene3D G3DSA:1.10.1240.20 430 494 4.3E-13 T 23-04-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 SUPERFAMILY SSF53955 501 655 5.63E-48 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS12860 b743d8efc6926ea5cc47fca74919eb43 688 PANTHER PTHR21666 485 648 1.4E-48 T 23-04-2016 THIMO_RS11230 ab5ff08082d7d788837fdb6c634d6282 162 PIRSF PIRSF000216 1 162 4.3E-48 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 THIMO_RS11230 ab5ff08082d7d788837fdb6c634d6282 162 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 20 161 2.1E-42 T 23-04-2016 THIMO_RS11230 ab5ff08082d7d788837fdb6c634d6282 162 SUPERFAMILY SSF52833 13 161 2.8E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11230 ab5ff08082d7d788837fdb6c634d6282 162 PANTHER PTHR10371 12 162 5.1E-50 T 23-04-2016 THIMO_RS11230 ab5ff08082d7d788837fdb6c634d6282 162 Gene3D G3DSA:3.40.30.10 82 153 6.4E-7 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11525 ff0ec46e5e73fd6bbefbc6eb7cb5c049 173 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 2 130 1.2E-49 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 THIMO_RS11525 ff0ec46e5e73fd6bbefbc6eb7cb5c049 173 PANTHER PTHR11995:SF14 2 168 2.0E-74 T 23-04-2016 THIMO_RS11525 ff0ec46e5e73fd6bbefbc6eb7cb5c049 173 SUPERFAMILY SSF56770 2 140 1.11E-51 T 23-04-2016 THIMO_RS11525 ff0ec46e5e73fd6bbefbc6eb7cb5c049 173 Gene3D G3DSA:3.40.50.700 4 126 1.4E-22 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS11525 ff0ec46e5e73fd6bbefbc6eb7cb5c049 173 PANTHER PTHR11995 2 168 2.0E-74 T 23-04-2016 THIMO_RS11525 ff0ec46e5e73fd6bbefbc6eb7cb5c049 173 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 15 123 1.7E-20 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PANTHER PTHR24423 587 830 3.0E-78 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PANTHER PTHR24423 351 483 3.0E-78 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PANTHER PTHR24423 3 8 3.0E-78 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 Gene3D G3DSA:3.30.565.10 664 835 5.1E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 Pfam PF13426 PAS domain 378 484 6.3E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 Gene3D G3DSA:3.30.450.20 362 483 8.3E-16 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PRINTS PR00344 Bacterial sensor protein C-terminal signature 781 791 5.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PRINTS PR00344 Bacterial sensor protein C-terminal signature 792 810 5.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PRINTS PR00344 Bacterial sensor protein C-terminal signature 816 829 5.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PRINTS PR00344 Bacterial sensor protein C-terminal signature 763 777 5.2E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SUPERFAMILY SSF47384 609 674 2.35E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SMART SM00387 722 832 5.5E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 Gene3D G3DSA:1.10.287.130 611 663 3.9E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 363 492 2.4E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SUPERFAMILY SSF55785 378 493 4.57E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SMART SM00388 610 680 2.1E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SUPERFAMILY SSF55874 668 834 3.01E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PANTHER PTHR24423:SF505 587 830 3.0E-78 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PANTHER PTHR24423:SF505 351 483 3.0E-78 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 PANTHER PTHR24423:SF505 3 8 3.0E-78 T 23-04-2016 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 Pfam PF00512 His Kinase A (phospho-acceptor) domain 611 674 3.3E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 725 829 9.4E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SMART SM00091 493 558 6.4 T 23-04-2016 IPR000014 PAS domain THIMO_RS11095 23357e9f18b3e8a7262b21a7164f765c 842 SMART SM00091 367 437 0.087 T 23-04-2016 IPR000014 PAS domain THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 Gene3D G3DSA:3.40.50.150 133 407 1.3E-87 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 PANTHER PTHR10108 68 323 7.2E-94 T 23-04-2016 THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 PANTHER PTHR10108 340 406 7.2E-94 T 23-04-2016 THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 PANTHER PTHR10108:SF795 68 323 7.2E-94 T 23-04-2016 THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 PANTHER PTHR10108:SF795 340 406 7.2E-94 T 23-04-2016 THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 SUPERFAMILY SSF53335 145 407 1.02E-69 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 Pfam PF02353 Mycolic acid cyclopropane synthetase 136 404 5.4E-83 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04465 b7790407f0611cbcba4af19f4ea9693c 411 PIRSF PIRSF003085 17 411 3.9E-120 T 23-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 23-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:4.10.80.40 556 587 2.1E-20 T 23-04-2016 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Pfam PF00890 FAD binding domain 9 404 6.5E-114 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:1.20.58.100 446 555 1.3E-37 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 587 1.7E-39 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF46977 451 587 7.85E-51 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 7 587 2.5E-265 T 23-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:3.50.50.60 350 426 2.4E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:3.50.50.60 3 242 2.4E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF56425 236 354 2.54E-43 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 PANTHER PTHR11632 1 582 0.0 T 23-04-2016 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 PIRSF PIRSF000171 1 579 7.2E-50 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 PANTHER PTHR11632:SF5 1 582 0.0 T 23-04-2016 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF51905 358 439 1.8E-75 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF51905 3 259 1.8E-75 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:3.90.700.10 243 348 3.3E-41 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS02205 6ab6b95075b09314226f2ae81d41d949 587 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 587 1.5E-235 T 23-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 THIMO_RS06565 7510e42310c6a0320f9938991b37a5bf 419 PANTHER PTHR30462:SF3 8 410 4.0E-93 T 23-04-2016 THIMO_RS06565 7510e42310c6a0320f9938991b37a5bf 419 Pfam PF04403 Paraquat-inducible protein A 253 409 1.2E-59 T 23-04-2016 IPR007498 Paraquat-inducible protein A THIMO_RS06565 7510e42310c6a0320f9938991b37a5bf 419 Pfam PF04403 Paraquat-inducible protein A 44 198 2.1E-50 T 23-04-2016 IPR007498 Paraquat-inducible protein A THIMO_RS06565 7510e42310c6a0320f9938991b37a5bf 419 PANTHER PTHR30462 8 410 4.0E-93 T 23-04-2016 THIMO_RS06565 7510e42310c6a0320f9938991b37a5bf 419 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 6 407 1.4E-96 T 23-04-2016 IPR005219 Conserved hypothetical protein CHP00155 THIMO_RS00345 d8eeca296c4fd6f7500f737b368189bd 168 Pfam PF16702 Domain of unknown function (DUF5063) 15 163 5.8E-32 T 23-04-2016 IPR032025 Protein of unknown function DUF5063 THIMO_RS15055 8518f48ceae0495a18ca696a6df34498 161 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 10 35 4.2E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS15055 8518f48ceae0495a18ca696a6df34498 161 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 35 3.8E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS15055 8518f48ceae0495a18ca696a6df34498 161 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 13 144 1.2E-26 T 23-04-2016 IPR013362 Pilus modification type IV, PilV THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 PANTHER PTHR21499 4 373 1.6E-126 T 23-04-2016 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 PIRSF PIRSF000098 1 435 1.1E-160 T 23-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 SUPERFAMILY SSF55021 353 423 9.93E-13 T 23-04-2016 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 SUPERFAMILY SSF55347 137 302 1.57E-53 T 23-04-2016 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 SUPERFAMILY SSF51735 1 158 5.84E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 Gene3D G3DSA:3.30.360.10 149 298 2.7E-57 T 23-04-2016 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 Pfam PF00742 Homoserine dehydrogenase 137 315 2.1E-64 T 23-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 PANTHER PTHR21499:SF2 4 373 1.6E-126 T 23-04-2016 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 Gene3D G3DSA:3.30.70.260 354 423 4.0E-8 T 23-04-2016 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 23-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 Pfam PF01842 ACT domain 354 421 8.1E-14 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 3.4E-17 T 23-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 THIMO_RS05230 3e4dbbdc48b0ab01464a4baa78444500 437 Gene3D G3DSA:3.40.50.720 1 148 2.9E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 Gene3D G3DSA:1.10.260.40 21 110 1.6E-28 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 SUPERFAMILY SSF47413 25 108 3.56E-23 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 PANTHER PTHR36924 17 109 4.7E-29 T 23-04-2016 THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 SMART SM00530 30 85 0.0011 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 PANTHER PTHR36924:SF1 17 109 4.7E-29 T 23-04-2016 THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 Pfam PF01381 Helix-turn-helix 37 81 1.8E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS16440 f6e03b6b445203df573501c92b3ae0e1 119 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 21 99 7.6E-29 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 Pfam PF00471 Ribosomal protein L33 7 53 7.0E-18 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 PANTHER PTHR15238:SF1 1 55 2.4E-23 T 23-04-2016 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 23-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.4E-25 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 SUPERFAMILY SSF57829 1 53 2.56E-19 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 14.926 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03405 5df805937c5c5f6a19a050dbf1ef3be2 55 PANTHER PTHR15238 1 55 2.4E-23 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 Pfam PF05524 PEP-utilising enzyme, N-terminal 8 131 1.3E-25 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 Gene3D G3DSA:3.20.20.60 264 563 1.2E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 457 475 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 Pfam PF00391 PEP-utilising enzyme, mobile domain 162 233 2.0E-20 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 261 551 2.0E-100 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 SUPERFAMILY SSF51621 257 551 9.42E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 Gene3D G3DSA:1.10.274.10 30 137 1.6E-29 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 301 320 1.8E-27 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 457 472 1.8E-27 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 510 522 1.8E-27 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 474 489 1.8E-27 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 SUPERFAMILY SSF52009 117 240 8.24E-26 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 Gene3D G3DSA:3.50.30.10 138 263 1.8E-34 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PANTHER PTHR22931 73 560 1.3E-147 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 SUPERFAMILY SSF47831 30 148 9.81E-28 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PANTHER PTHR22931:SF28 73 560 1.3E-147 T 23-04-2016 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 PIRSF PIRSF000732 3 578 9.4E-191 T 23-04-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 THIMO_RS13195 ab113e95e8e1254463147495cd670f1a 580 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 9 554 2.5E-150 T 23-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 Gene3D G3DSA:3.80.30.20 366 603 1.1E-42 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 Pfam PF11842 Domain of unknown function (DUF3362) 586 686 1.2E-46 T 23-04-2016 IPR024560 Uncharacterised protein family UPF0313, C-terminal THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 SUPERFAMILY SSF102114 370 432 2.75E-9 T 23-04-2016 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 SUPERFAMILY SSF102114 462 606 2.75E-9 T 23-04-2016 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 PANTHER PTHR32331 3 710 0.0 T 23-04-2016 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 Pfam PF08497 Radical SAM N-terminal 24 371 2.8E-141 T 23-04-2016 IPR013704 Uncharacterised protein family UPF0313, N-terminal THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 24 636 1.2E-253 T 23-04-2016 IPR022946 Uncharacterised protein family UPF0313 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 SMART SM00729 368 619 2.3E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 Pfam PF04055 Radical SAM superfamily 372 577 9.3E-16 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 PANTHER PTHR32331:SF3 3 710 0.0 T 23-04-2016 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 22 689 47.721 T 23-04-2016 IPR022946 Uncharacterised protein family UPF0313 THIMO_RS00025 fb74d49cce10ad961c802bca17678de4 710 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 372 392 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 Pfam PF00155 Aminotransferase class I and II 51 390 9.6E-59 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 PANTHER PTHR13693 21 396 7.9E-165 T 23-04-2016 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 245 254 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 SUPERFAMILY SSF53383 19 393 1.46E-104 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 Gene3D G3DSA:3.90.1150.10 281 393 1.3E-33 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 Gene3D G3DSA:3.40.640.10 69 280 1.6E-80 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 PANTHER PTHR13693:SF53 21 396 7.9E-165 T 23-04-2016 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 31 390 5.0E-144 T 23-04-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 THIMO_RS14420 e18942fed6dde43db3c195fc91231126 399 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 14 394 50.829 T 23-04-2016 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 THIMO_RS17525 20d1c838a16f38a9ccda7a96242982bf 564 Pfam PF13672 Protein phosphatase 2C 304 548 1.4E-37 T 23-04-2016 THIMO_RS17525 20d1c838a16f38a9ccda7a96242982bf 564 SUPERFAMILY SSF81606 307 563 3.92E-9 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS17525 20d1c838a16f38a9ccda7a96242982bf 564 Gene3D G3DSA:3.60.40.10 299 458 2.2E-5 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 PANTHER PTHR18937:SF261 1 1162 0.0 T 23-04-2016 THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 PIRSF PIRSF005719 1 1166 1.8E-262 T 23-04-2016 IPR024704 Structural maintenance of chromosomes protein THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 Gene3D G3DSA:3.40.50.300 1050 1162 3.7E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 Gene3D G3DSA:3.40.50.300 1 211 3.7E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 SUPERFAMILY SSF75553 472 665 1.14E-5 T 23-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 SUPERFAMILY SSF52540 1 206 1.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 SUPERFAMILY SSF52540 1043 1158 1.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 PANTHER PTHR18937 1 1162 0.0 T 23-04-2016 THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1157 0.0 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1159 22.75 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 THIMO_RS04355 d0d28b3085071b982ab44dcae4b65a53 1167 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1150 2.9E-64 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal THIMO_RS01660 0b4f062b030f6d8ba993860de30207b2 175 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 85.856 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 THIMO_RS01660 0b4f062b030f6d8ba993860de30207b2 175 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 4.9E-62 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 THIMO_RS01660 0b4f062b030f6d8ba993860de30207b2 175 PANTHER PTHR30455 2 156 3.9E-68 T 23-04-2016 THIMO_RS01660 0b4f062b030f6d8ba993860de30207b2 175 Pfam PF03477 ATP cone domain 50 136 3.2E-15 T 23-04-2016 IPR005144 ATP-cone domain THIMO_RS01660 0b4f062b030f6d8ba993860de30207b2 175 PANTHER PTHR30455:SF2 2 156 3.9E-68 T 23-04-2016 THIMO_RS12440 6838f789ab0fda155ba1f102af899457 1316 Pfam PF13502 AsmA-like C-terminal region 1027 1270 5.3E-51 T 23-04-2016 IPR032712 AsmA-like, C-terminal THIMO_RS12440 6838f789ab0fda155ba1f102af899457 1316 Pfam PF13116 Protein of unknown function 507 784 6.4E-49 T 23-04-2016 IPR025263 Domain of unknown function DUF3971 THIMO_RS12440 6838f789ab0fda155ba1f102af899457 1316 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 11 1274 1.2E-192 T 23-04-2016 IPR011836 Conserved hypothetical protein CHP02099 THIMO_RS12440 6838f789ab0fda155ba1f102af899457 1316 PANTHER PTHR38690 12 1289 8.5E-163 T 23-04-2016 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 PANTHER PTHR11271 4 436 9.5E-192 T 23-04-2016 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 Pfam PF01979 Amidohydrolase family 59 408 9.7E-73 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 4 435 42.204 T 23-04-2016 IPR023512 Deaminase MtaD/DadD GO:0019239 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 SUPERFAMILY SSF51338 4 62 5.46E-29 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 SUPERFAMILY SSF51338 360 434 5.46E-29 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 Gene3D G3DSA:2.30.40.10 369 410 2.5E-12 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 Gene3D G3DSA:2.30.40.10 16 64 2.5E-12 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 Gene3D G3DSA:3.20.20.140 65 368 6.4E-108 T 23-04-2016 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 PANTHER PTHR11271:SF7 4 436 9.5E-192 T 23-04-2016 THIMO_RS06180 71c15823688a422a45b21d70106f8373 445 SUPERFAMILY SSF51556 62 361 2.04E-105 T 23-04-2016 IPR032466 Metal-dependent hydrolase THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 SUPERFAMILY SSF47928 5 107 2.35E-23 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 8 177 1.9E-49 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 8 27 1.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 152 170 1.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 87 101 1.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 76 87 1.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 137 152 1.6E-23 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 Gene3D G3DSA:1.10.520.20 4 107 7.8E-28 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 4 177 16.857 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PANTHER PTHR11910 9 177 1.0E-46 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 PANTHER PTHR11910:SF1 9 177 1.0E-46 T 23-04-2016 THIMO_RS05585 c27e68e13309033c61f191635f3d4be1 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 177 2.4E-44 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 Pfam PF09335 SNARE associated Golgi protein 581 695 6.6E-20 T 23-04-2016 IPR032816 SNARE associated Golgi protein THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 SUPERFAMILY SSF56024 25 263 2.08E-29 T 23-04-2016 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 Pfam PF13091 PLD-like domain 280 412 1.0E-11 T 23-04-2016 IPR025202 Phospholipase D-like domain THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 SMART SM00155 148 175 42.0 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 SMART SM00155 368 395 0.035 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 PANTHER PTHR12677 514 689 4.4E-21 T 23-04-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 Gene3D G3DSA:3.30.870.10 276 415 4.1E-19 T 23-04-2016 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 Gene3D G3DSA:3.30.870.10 37 264 4.8E-20 T 23-04-2016 THIMO_RS07260 e9fd07e186c3b15850b77ec924ecfe2a 751 SUPERFAMILY SSF56024 216 432 1.02E-24 T 23-04-2016 THIMO_RS00660 0e39bf047ef2f61e96625984e656005a 480 SUPERFAMILY SSF111283 13 475 2.09E-90 T 23-04-2016 THIMO_RS00660 0e39bf047ef2f61e96625984e656005a 480 PANTHER PTHR30624:SF10 18 480 4.9E-141 T 23-04-2016 THIMO_RS00660 0e39bf047ef2f61e96625984e656005a 480 Pfam PF01523 Putative modulator of DNA gyrase 20 325 2.2E-44 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS00660 0e39bf047ef2f61e96625984e656005a 480 PANTHER PTHR30624 18 480 4.9E-141 T 23-04-2016 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 Gene3D G3DSA:3.30.870.10 106 309 1.1E-33 T 23-04-2016 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 17 479 2.0E-98 T 23-04-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 SUPERFAMILY SSF56024 106 308 4.08E-40 T 23-04-2016 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 Pfam PF13091 PLD-like domain 322 440 7.4E-21 T 23-04-2016 IPR025202 Phospholipase D-like domain THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 Pfam PF13091 PLD-like domain 130 276 6.6E-8 T 23-04-2016 IPR025202 Phospholipase D-like domain THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 SMART SM00155 392 419 6.6E-5 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 SMART SM00155 216 243 4.7 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 SUPERFAMILY SSF56024 287 462 1.91E-38 T 23-04-2016 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 Pfam PF13396 Phospholipase_D-nuclease N-terminal 17 54 7.9E-11 T 23-04-2016 IPR027379 Cardiolipin synthase N-terminal THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 PANTHER PTHR21248 11 467 8.8E-101 T 23-04-2016 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 Gene3D G3DSA:3.30.870.10 318 454 4.9E-31 T 23-04-2016 THIMO_RS09845 9f008086f670e149c9dc9d33223101d6 479 PANTHER PTHR21248:SF9 11 467 8.8E-101 T 23-04-2016 THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 TIGRFAM TIGR02060 aprB: adenylylsulfate reductase, beta subunit 1 133 6.4E-64 T 23-04-2016 IPR011802 Adenylylsulphate reductase, beta subunit THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 Gene3D G3DSA:3.30.70.20 7 62 3.7E-16 T 23-04-2016 THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 PANTHER PTHR24960:SF53 1 160 5.9E-30 T 23-04-2016 THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 42 53 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 SUPERFAMILY SSF54862 4 87 4.19E-21 T 23-04-2016 THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 Pfam PF12838 4Fe-4S dicluster domain 9 56 2.7E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 PANTHER PTHR24960 1 160 5.9E-30 T 23-04-2016 THIMO_RS05830 13a0a31dd45067564e742f277db59727 160 Pfam PF12139 Adenosine-5'-phosphosulfate reductase beta subunit 59 143 2.4E-34 T 23-04-2016 IPR022738 Adenylylsulphate reductase, beta subunit, C-terminal THIMO_RS14830 b0e8ef79d5f384fbd888c3f4dd4b921e 250 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 250 46.607 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 THIMO_RS14830 b0e8ef79d5f384fbd888c3f4dd4b921e 250 Pfam PF02654 Cobalamin-5-phosphate synthase 13 242 4.2E-50 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 THIMO_RS14830 b0e8ef79d5f384fbd888c3f4dd4b921e 250 PANTHER PTHR34148 1 250 3.7E-47 T 23-04-2016 THIMO_RS14830 b0e8ef79d5f384fbd888c3f4dd4b921e 250 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 14 245 6.0E-36 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 THIMO_RS14830 b0e8ef79d5f384fbd888c3f4dd4b921e 250 PANTHER PTHR34148:SF1 1 250 3.7E-47 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 31 44 1.4E-24 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 7 22 1.4E-24 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 59 67 1.4E-24 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 98 115 1.4E-24 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 77 86 1.4E-24 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 PANTHER PTHR21087 1 171 1.0E-65 T 23-04-2016 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 SUPERFAMILY SSF52540 6 169 1.32E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 23-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 30.259 T 23-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 Gene3D G3DSA:3.40.50.300 3 171 1.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00415 83c5a02f680e2c092ccdf7d4decc656f 174 Pfam PF01202 Shikimate kinase 13 169 1.4E-52 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 389 455 4.5E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 613 1.9E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 1.9E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 569 1.9E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 555 1.9E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 Gene3D G3DSA:3.30.565.10 441 614 1.8E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PANTHER PTHR24423 378 694 1.7E-93 T 23-04-2016 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 SMART SM00388 388 455 1.0E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 Gene3D G3DSA:1.10.287.130 380 440 6.1E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 503 615 2.1E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 SUPERFAMILY SSF52172 653 774 1.85E-15 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PANTHER PTHR24423:SF374 264 288 1.7E-93 T 23-04-2016 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PANTHER PTHR24423 264 288 1.7E-93 T 23-04-2016 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 SUPERFAMILY SSF55874 444 614 1.7E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 Gene3D G3DSA:3.40.50.2300 654 774 1.6E-15 T 23-04-2016 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PANTHER PTHR24423:SF374 378 694 1.7E-93 T 23-04-2016 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 SUPERFAMILY SSF47384 375 456 1.12E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 Pfam PF00072 Response regulator receiver domain 654 766 1.7E-6 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PANTHER PTHR24423:SF374 713 773 1.7E-93 T 23-04-2016 THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 SMART SM00387 502 616 1.5E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS00440 28e39c3c990dc1e9abc4e1d8a055afc6 778 PANTHER PTHR24423 713 773 1.7E-93 T 23-04-2016 THIMO_RS09925 71deef27dacce3ad6116d2405c991ee7 185 Pfam PF00156 Phosphoribosyl transferase domain 20 145 3.8E-22 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 THIMO_RS09925 71deef27dacce3ad6116d2405c991ee7 185 SUPERFAMILY SSF53271 16 183 3.28E-45 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS09925 71deef27dacce3ad6116d2405c991ee7 185 Gene3D G3DSA:3.40.50.2020 15 183 4.5E-51 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS09925 71deef27dacce3ad6116d2405c991ee7 185 PANTHER PTHR22573 16 178 2.2E-45 T 23-04-2016 THIMO_RS09925 71deef27dacce3ad6116d2405c991ee7 185 PANTHER PTHR22573:SF56 16 178 2.2E-45 T 23-04-2016 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 TIGRFAM TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D 14 586 6.9E-155 T 23-04-2016 IPR011776 Magnesium chelatase, ATPase subunit D GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 SUPERFAMILY SSF53300 414 527 5.93E-20 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 Gene3D G3DSA:3.40.50.300 55 165 8.7E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 PANTHER PTHR10338 409 522 6.8E-34 T 23-04-2016 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 PANTHER PTHR10338 57 349 6.8E-34 T 23-04-2016 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 SUPERFAMILY SSF52540 44 266 9.11E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 PANTHER PTHR10338:SF126 409 522 6.8E-34 T 23-04-2016 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 PANTHER PTHR10338:SF126 57 349 6.8E-34 T 23-04-2016 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 SMART SM00327 412 588 3.3E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 Gene3D G3DSA:1.10.8.80 192 271 3.2E-9 T 23-04-2016 THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 Gene3D G3DSA:3.40.50.410 412 522 1.9E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS14340 f7b317841d2a095895e2f6cb5663d90a 596 Pfam PF13519 von Willebrand factor type A domain 415 518 1.1E-13 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SMART SM00739 123 150 7.7E-6 T 23-04-2016 IPR005824 KOW THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 24.818 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Gene3D G3DSA:2.30.30.30 116 176 3.3E-29 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 5.0E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 5.0E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 5.0E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 23-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 3.8E-66 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Pfam PF00467 KOW motif 126 156 1.2E-8 T 23-04-2016 IPR005824 KOW THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SMART SM00738 2 111 3.1E-48 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Pfam PF02357 Transcription termination factor nusG 3 108 1.9E-26 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SUPERFAMILY SSF50104 121 176 3.16E-18 T 23-04-2016 IPR008991 Translation protein SH3-like domain THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Gene3D G3DSA:3.30.70.940 3 113 6.7E-45 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PANTHER PTHR30265 3 176 1.2E-81 T 23-04-2016 THIMO_RS13690 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SUPERFAMILY SSF82679 3 114 5.89E-40 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 Gene3D G3DSA:3.40.50.2300 3 127 8.4E-36 T 23-04-2016 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 SMART SM00448 6 116 2.5E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 Gene3D G3DSA:1.10.10.10 135 227 5.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.7E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 PANTHER PTHR26402:SF573 6 226 5.6E-110 T 23-04-2016 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 PANTHER PTHR26402 6 226 5.6E-110 T 23-04-2016 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 Pfam PF00072 Response regulator receiver domain 8 116 5.2E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 SUPERFAMILY SSF52172 3 128 3.27E-37 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 SUPERFAMILY SSF46894 135 227 1.23E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS09875 d79763a4f143cbecd39e2f8a60a3021e 230 SMART SM00862 150 226 6.7E-19 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 PIRSF PIRSF001361 1 352 1.4E-158 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 PANTHER PTHR21225 1 352 9.0E-217 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 PANTHER PTHR21225:SF7 1 352 9.0E-217 T 23-04-2016 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 4.6E-159 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 Gene3D G3DSA:3.20.20.70 9 351 5.2E-153 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 SUPERFAMILY SSF51569 7 348 3.35E-133 T 23-04-2016 THIMO_RS14710 3bffc474a456656e745eade3beca6acf 352 Pfam PF00793 DAHP synthetase I family 42 336 4.0E-97 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 Gene3D G3DSA:3.30.420.40 17 113 6.1E-8 T 23-04-2016 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 Pfam PF11104 Type IV pilus assembly protein PilM; 20 361 1.2E-116 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 16 361 1.1E-97 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 SUPERFAMILY SSF53067 68 183 8.2E-12 T 23-04-2016 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 PIRSF PIRSF019169 6 362 2.6E-109 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 Gene3D G3DSA:3.30.420.40 204 321 1.2E-17 T 23-04-2016 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 SUPERFAMILY SSF53067 200 361 7.02E-18 T 23-04-2016 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 SMART SM00842 18 187 0.0019 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 PANTHER PTHR32432:SF3 6 361 6.9E-64 T 23-04-2016 THIMO_RS00390 8be415649c4f05076fe0f9da7c72f548 362 PANTHER PTHR32432 6 361 6.9E-64 T 23-04-2016 THIMO_RS05410 52733210662c844f8811a63bbb4f040d 303 Pfam PF10503 Esterase PHB depolymerase 27 230 1.5E-52 T 23-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 THIMO_RS05410 52733210662c844f8811a63bbb4f040d 303 Gene3D G3DSA:3.40.50.1820 16 300 7.1E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05410 52733210662c844f8811a63bbb4f040d 303 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 30 159 4.9E-36 T 23-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 THIMO_RS05410 52733210662c844f8811a63bbb4f040d 303 SUPERFAMILY SSF53474 257 298 3.53E-30 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05410 52733210662c844f8811a63bbb4f040d 303 SUPERFAMILY SSF53474 25 219 3.53E-30 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 SMART SM00418 30 108 6.5E-26 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 PANTHER PTHR33154 14 112 4.7E-25 T 23-04-2016 THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 79 94 2.2E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 32 47 2.2E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 2.2E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 Pfam PF01022 Bacterial regulatory protein, arsR family 37 81 4.7E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 SUPERFAMILY SSF46785 19 112 1.14E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS17440 80949a5bcf30fd6301959e39b722be74 115 Gene3D G3DSA:1.10.10.10 20 112 2.4E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 Pfam PF01938 TRAM domain 379 440 5.9E-17 T 23-04-2016 IPR002792 TRAM domain THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 Pfam PF04055 Radical SAM superfamily 152 326 5.6E-26 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 SUPERFAMILY SSF102114 124 371 9.94E-61 T 23-04-2016 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 Pfam PF00919 Uncharacterized protein family UPF0004 5 105 1.2E-27 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 5 440 2.1E-184 T 23-04-2016 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 152 172 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 438 1.8E-144 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 4 441 73.451 T 23-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 PANTHER PTHR11918 4 440 3.5E-198 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 Gene3D G3DSA:3.80.30.20 147 380 9.6E-76 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 SMART SM00729 148 368 2.6E-60 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS03210 f43e0062759ef9177effadaa43d5c4b6 446 PANTHER PTHR11918:SF43 4 440 3.5E-198 T 23-04-2016 THIMO_RS16370 6274cdf8cda83c9ae6059e55677bca38 224 PANTHER PTHR10108 22 207 1.8E-19 T 23-04-2016 THIMO_RS16370 6274cdf8cda83c9ae6059e55677bca38 224 Pfam PF08242 Methyltransferase domain 49 146 6.7E-14 T 23-04-2016 IPR013217 Methyltransferase type 12 THIMO_RS16370 6274cdf8cda83c9ae6059e55677bca38 224 SUPERFAMILY SSF53335 29 214 9.36E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16370 6274cdf8cda83c9ae6059e55677bca38 224 Gene3D G3DSA:3.40.50.150 31 214 9.2E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 PANTHER PTHR24220 3 221 1.7E-100 T 23-04-2016 THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 SUPERFAMILY SSF52540 1 229 8.96E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 PANTHER PTHR24220:SF578 3 221 1.7E-100 T 23-04-2016 THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 SMART SM00382 30 217 6.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 Gene3D G3DSA:3.40.50.300 1 227 6.9E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06865 92955daf77d93136d6c978b0cd0c7158 232 Pfam PF00005 ABC transporter 21 169 9.4E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS14465 328fdd3dce7f9776c4696f70d5e10289 354 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 159 166 - T 23-04-2016 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 THIMO_RS14465 328fdd3dce7f9776c4696f70d5e10289 354 SUPERFAMILY SSF55895 124 334 2.88E-25 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 THIMO_RS14465 328fdd3dce7f9776c4696f70d5e10289 354 Pfam PF00445 Ribonuclease T2 family 124 312 3.8E-20 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 THIMO_RS14465 328fdd3dce7f9776c4696f70d5e10289 354 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 218 229 - T 23-04-2016 IPR033130 Ribonuclease T2, His active site 2 THIMO_RS14465 328fdd3dce7f9776c4696f70d5e10289 354 Gene3D G3DSA:3.90.730.10 124 327 3.1E-29 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 THIMO_RS14465 328fdd3dce7f9776c4696f70d5e10289 354 PANTHER PTHR11240 124 313 8.9E-14 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 THIMO_RS13185 8573c41d713a2c5405d0628c41b5e60a 138 Gene3D G3DSA:3.40.50.510 2 131 2.4E-30 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 THIMO_RS13185 8573c41d713a2c5405d0628c41b5e60a 138 PANTHER PTHR33799 3 129 1.6E-23 T 23-04-2016 THIMO_RS13185 8573c41d713a2c5405d0628c41b5e60a 138 SUPERFAMILY SSF53062 3 129 1.22E-25 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 THIMO_RS13185 8573c41d713a2c5405d0628c41b5e60a 138 Pfam PF03610 PTS system fructose IIA component 6 116 1.6E-13 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 THIMO_RS07470 c1161a02a0281ef0f1e4f06119a04225 212 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 28 38 - T 23-04-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 THIMO_RS07470 c1161a02a0281ef0f1e4f06119a04225 212 PANTHER PTHR30383:SF5 28 202 2.9E-37 T 23-04-2016 THIMO_RS07470 c1161a02a0281ef0f1e4f06119a04225 212 PANTHER PTHR30383 28 202 2.9E-37 T 23-04-2016 THIMO_RS07470 c1161a02a0281ef0f1e4f06119a04225 212 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 31 189 2.4E-26 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS07470 c1161a02a0281ef0f1e4f06119a04225 212 Gene3D G3DSA:3.40.50.1110 26 206 8.0E-50 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS07470 c1161a02a0281ef0f1e4f06119a04225 212 SUPERFAMILY SSF52266 27 206 6.57E-47 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 Pfam PF00905 Penicillin binding protein transpeptidase domain 448 707 1.2E-21 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 SUPERFAMILY SSF56601 385 773 7.7E-117 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 SUPERFAMILY SSF56601 334 356 7.7E-117 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 Gene3D G3DSA:3.30.2060.10 83 170 2.2E-17 T 23-04-2016 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 Gene3D G3DSA:3.40.710.10 355 769 2.5E-111 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 42 764 8.4E-268 T 23-04-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 Pfam PF00912 Transglycosylase 174 352 4.3E-60 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 Pfam PF14814 Bifunctional transglycosylase second domain 85 169 1.2E-24 T 23-04-2016 IPR028166 Bifunctional transglycosylase second domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 PANTHER PTHR32282 168 799 9.0E-237 T 23-04-2016 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 SUPERFAMILY SSF53955 171 374 1.18E-68 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 185 723 3.5E-155 T 23-04-2016 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 Gene3D G3DSA:1.10.3810.10 180 354 5.2E-67 T 23-04-2016 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 PANTHER PTHR32282:SF11 168 799 9.0E-237 T 23-04-2016 THIMO_RS10060 2f9cf312c73550e0c0a46da012f4c133 811 PIRSF PIRSF002799 6 794 3.7E-299 T 23-04-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS01095 24e53b234206d9e17fecbc88d32563ab 257 PANTHER PTHR21621 85 257 1.3E-19 T 23-04-2016 THIMO_RS01095 24e53b234206d9e17fecbc88d32563ab 257 SUPERFAMILY SSF56059 59 249 2.36E-28 T 23-04-2016 THIMO_RS01095 24e53b234206d9e17fecbc88d32563ab 257 Gene3D G3DSA:3.30.470.20 144 228 9.8E-9 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS01095 24e53b234206d9e17fecbc88d32563ab 257 Pfam PF08443 RimK-like ATP-grasp domain 84 248 6.6E-14 T 23-04-2016 IPR013651 ATP-grasp fold, RimK-type THIMO_RS01095 24e53b234206d9e17fecbc88d32563ab 257 Gene3D G3DSA:3.30.1490.20 61 143 4.4E-6 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 Pfam PF00561 alpha/beta hydrolase fold 59 295 4.3E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 PANTHER PTHR10794:SF46 5 313 1.8E-59 T 23-04-2016 THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 Gene3D G3DSA:3.40.50.1820 57 295 3.4E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 PANTHER PTHR10794 5 313 1.8E-59 T 23-04-2016 THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 SUPERFAMILY SSF53474 9 300 9.82E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 PIRSF PIRSF005211 1 313 6.4E-87 T 23-04-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- THIMO_RS05240 1d4800c96d9b48d44359f5e6ef5c49a3 313 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 221 262 - T 23-04-2016 IPR000952 AB hydrolase 4, conserved site KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 Gene3D G3DSA:1.10.10.60 264 318 3.1E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 Pfam PF12833 Helix-turn-helix domain 233 314 2.9E-21 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 Gene3D G3DSA:1.10.10.60 213 263 1.2E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 Pfam PF14525 AraC-binding-like domain 69 191 4.0E-11 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 SUPERFAMILY SSF46689 264 316 2.57E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 SMART SM00342 227 312 5.1E-26 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 312 2.1E-7 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 296 2.1E-7 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 PANTHER PTHR11019:SF50 80 320 7.6E-31 T 23-04-2016 THIMO_RS13395 582aa60fb5e11a0c9193031827ee8317 332 PANTHER PTHR11019 80 320 7.6E-31 T 23-04-2016 THIMO_RS16870 e1f1eb3879175d113368e3758a3e3a54 124 Pfam PF01890 Cobalamin synthesis G C-terminus 3 119 2.0E-25 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 THIMO_RS16870 e1f1eb3879175d113368e3758a3e3a54 124 PANTHER PTHR37477:SF1 3 124 5.8E-15 T 23-04-2016 THIMO_RS16870 e1f1eb3879175d113368e3758a3e3a54 124 Gene3D G3DSA:3.30.420.180 2 122 1.8E-33 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 THIMO_RS16870 e1f1eb3879175d113368e3758a3e3a54 124 SUPERFAMILY SSF159664 2 121 3.92E-31 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 THIMO_RS16870 e1f1eb3879175d113368e3758a3e3a54 124 PANTHER PTHR37477 3 124 5.8E-15 T 23-04-2016 THIMO_RS06080 3e47cbbbda488f9c51c1139010dc75f9 193 PANTHER PTHR30335:SF0 2 193 1.7E-114 T 23-04-2016 THIMO_RS06080 3e47cbbbda488f9c51c1139010dc75f9 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 190 2.7E-85 T 23-04-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 THIMO_RS06080 3e47cbbbda488f9c51c1139010dc75f9 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 191 26.179 T 23-04-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 THIMO_RS06080 3e47cbbbda488f9c51c1139010dc75f9 193 PIRSF PIRSF006102 1 193 2.5E-62 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS06080 3e47cbbbda488f9c51c1139010dc75f9 193 PANTHER PTHR30335 2 193 1.7E-114 T 23-04-2016 THIMO_RS06080 3e47cbbbda488f9c51c1139010dc75f9 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 1.0E-60 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS14080 d5f61c69a2397a840abfe6fb6681f78a 185 Gene3D G3DSA:3.90.79.10 46 177 2.3E-20 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS14080 d5f61c69a2397a840abfe6fb6681f78a 185 SUPERFAMILY SSF55811 33 182 1.05E-21 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS14080 d5f61c69a2397a840abfe6fb6681f78a 185 Pfam PF00293 NUDIX domain 52 166 1.8E-12 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS07640 c36055dd18964f1f2da84408c6622e1e 348 SUPERFAMILY SSF110296 42 238 6.28E-5 T 23-04-2016 THIMO_RS07640 c36055dd18964f1f2da84408c6622e1e 348 Gene3D G3DSA:3.40.50.10610 108 168 8.2E-4 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component THIMO_RS07640 c36055dd18964f1f2da84408c6622e1e 348 Gene3D G3DSA:2.130.10.140 169 259 2.0E-5 T 23-04-2016 THIMO_RS07640 c36055dd18964f1f2da84408c6622e1e 348 Gene3D G3DSA:2.130.10.140 40 94 2.0E-5 T 23-04-2016 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 PANTHER PTHR33175 2 94 4.2E-54 T 23-04-2016 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 30.596 T 23-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 SUPERFAMILY SSF47729 3 92 3.53E-31 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 SMART SM00411 3 92 4.9E-42 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 96 2.4E-50 T 23-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.9E-17 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.9E-17 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.9E-17 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 1.6E-31 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 Gene3D G3DSA:4.10.520.10 2 92 5.6E-36 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 THIMO_RS13445 a8e1c8d1120ba4b97dc5653adff28ce6 99 PANTHER PTHR33175:SF2 2 94 4.2E-54 T 23-04-2016 THIMO_RS16050 f8ef7d3bb8e9553c07779f29bba7dd7d 154 PANTHER PTHR14087 1 154 6.7E-84 T 23-04-2016 THIMO_RS16050 f8ef7d3bb8e9553c07779f29bba7dd7d 154 Gene3D G3DSA:3.10.590.10 1 153 6.9E-31 T 23-04-2016 IPR002740 EVE domain THIMO_RS16050 f8ef7d3bb8e9553c07779f29bba7dd7d 154 SUPERFAMILY SSF88697 1 153 2.24E-58 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS16050 f8ef7d3bb8e9553c07779f29bba7dd7d 154 Pfam PF01878 EVE domain 3 152 6.3E-55 T 23-04-2016 IPR002740 EVE domain THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF52540 385 613 4.09E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF48452 1123 1311 1.35E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:1.25.40.10 878 1017 1.0E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:3.40.50.300 391 586 3.0E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF48452 880 1032 2.59E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 PANTHER PTHR10098:SF118 1048 1312 8.0E-18 T 23-04-2016 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 PANTHER PTHR10098:SF118 28 37 8.0E-18 T 23-04-2016 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Pfam PF12770 CHAT domain 97 323 2.1E-18 T 23-04-2016 IPR024983 CHAT domain THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF48452 1037 1154 7.33E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 PANTHER PTHR10098 1048 1312 8.0E-18 T 23-04-2016 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 PANTHER PTHR10098 28 37 8.0E-18 T 23-04-2016 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:1.25.40.10 1018 1154 3.3E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:1.25.40.10 1168 1373 4.2E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06710 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Pfam PF13191 AAA ATPase domain 387 544 1.2E-12 T 23-04-2016 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 Pfam PF13437 HlyD family secretion protein 192 301 6.3E-12 T 23-04-2016 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 Gene3D G3DSA:2.40.50.100 78 111 4.2E-10 T 23-04-2016 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 Gene3D G3DSA:2.40.50.100 189 221 4.2E-10 T 23-04-2016 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 PANTHER PTHR30469 1 336 1.0E-33 T 23-04-2016 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 336 9.9E-39 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 SUPERFAMILY SSF111369 68 308 3.4E-20 T 23-04-2016 THIMO_RS16550 a683460fb1747ccb57701cef368d94e0 392 PANTHER PTHR30469:SF15 1 336 1.0E-33 T 23-04-2016 THIMO_RS04250 79a081302c22fced34ef4fec1e5fccf8 316 Pfam PF13728 F plasmid transfer operon protein 31 257 4.2E-79 T 23-04-2016 THIMO_RS04250 79a081302c22fced34ef4fec1e5fccf8 316 SUPERFAMILY SSF52833 153 257 4.11E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS04250 79a081302c22fced34ef4fec1e5fccf8 316 TIGRFAM TIGR02740 TraF-like: TraF-like protein 24 267 1.0E-80 T 23-04-2016 IPR014111 Type IV conjugative transfer system protein TraF THIMO_RS04250 79a081302c22fced34ef4fec1e5fccf8 316 Gene3D G3DSA:3.40.30.10 154 255 6.7E-7 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS02160 be330c4a471033d07e88941e25e73c2f 600 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 34 580 4.3E-134 T 23-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 THIMO_RS02160 be330c4a471033d07e88941e25e73c2f 600 Pfam PF01368 DHH family 83 224 6.2E-10 T 23-04-2016 IPR001667 DDH domain THIMO_RS02160 be330c4a471033d07e88941e25e73c2f 600 Pfam PF02272 DHHA1 domain 392 460 5.8E-14 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 THIMO_RS02160 be330c4a471033d07e88941e25e73c2f 600 SUPERFAMILY SSF64182 59 471 2.62E-109 T 23-04-2016 THIMO_RS02160 be330c4a471033d07e88941e25e73c2f 600 PANTHER PTHR30255:SF2 36 589 1.9E-184 T 23-04-2016 THIMO_RS02160 be330c4a471033d07e88941e25e73c2f 600 PANTHER PTHR30255 36 589 1.9E-184 T 23-04-2016 THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 354 1.0E-20 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 Gene3D G3DSA:3.40.50.300 6 208 9.6E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 PANTHER PTHR13748:SF43 235 354 1.0E-83 T 23-04-2016 THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 PANTHER PTHR13748:SF43 2 215 1.0E-83 T 23-04-2016 THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 SUPERFAMILY SSF90002 260 354 2.09E-21 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 SMART SM00833 260 354 6.9E-23 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 Gene3D G3DSA:3.30.1220.10 239 354 9.1E-32 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 SUPERFAMILY SSF52540 6 209 6.04E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 PANTHER PTHR13748 235 354 1.0E-83 T 23-04-2016 THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 PANTHER PTHR13748 2 215 1.0E-83 T 23-04-2016 THIMO_RS11965 a828bbc78714d241aa846d48df04d038 359 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 186 5.9E-44 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 233 2.0E-33 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 Pfam PF13242 HAD-hyrolase-like 183 256 3.0E-18 T 23-04-2016 THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 Gene3D G3DSA:3.40.50.10410 89 182 8.1E-27 T 23-04-2016 IPR023215 Nitrophenylphosphatase-like domain THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 PANTHER PTHR19288:SF43 1 256 3.8E-72 T 23-04-2016 THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 TIGRFAM TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family 5 255 2.2E-61 T 23-04-2016 IPR006355 HAD-superfamily hydrolase, subfamily IIA, hypothetical 2 THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 PANTHER PTHR19288 1 256 3.8E-72 T 23-04-2016 THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 SUPERFAMILY SSF56784 5 257 8.53E-53 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 Gene3D G3DSA:3.40.50.1000 4 81 1.4E-40 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 Gene3D G3DSA:3.40.50.1000 183 260 1.4E-40 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS11175 748afd2de28d2f26fd01368bdc27fc30 264 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 89 3.1E-20 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 71 81 2.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 87 98 2.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 123 132 2.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 7 20 2.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.8E-14 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF54980 302 387 8.63E-15 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PANTHER PTHR23115:SF14 3 593 5.7E-286 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 3.3E-281 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:2.40.30.10 206 303 6.2E-25 T 23-04-2016 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Pfam PF00679 Elongation factor G C-terminus 395 476 4.2E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:3.30.70.240 400 477 1.3E-29 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Pfam PF03144 Elongation factor Tu domain 2 219 289 1.7E-9 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF52540 3 207 1.68E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF54980 398 512 1.25E-25 T 23-04-2016 IPR009022 Elongation factor G, III-V domain THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 5.2E-55 T 23-04-2016 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF50447 152 299 5.61E-33 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 PANTHER PTHR23115 3 593 5.7E-286 T 23-04-2016 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 134 3.3E-25 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:3.40.50.300 3 205 6.8E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:2.40.50.250 483 577 3.2E-41 T 23-04-2016 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:3.30.70.870 304 399 4.9E-39 T 23-04-2016 THIMO_RS05350 7bc64dd9bb650f04e211ff2e2baa3cce 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:2.120.10.90 500 747 2.1E-23 T 23-04-2016 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 SMART SM00434 15 465 3.1E-226 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:3.90.199.10 337 401 1.8E-105 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:3.90.199.10 35 241 1.8E-105 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 469 2.7E-132 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 SUPERFAMILY SSF56719 35 487 2.88E-154 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 PANTHER PTHR10169:SF30 1 526 0.0 T 23-04-2016 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 13 744 0.0 T 23-04-2016 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 PANTHER PTHR10169 1 526 0.0 T 23-04-2016 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 SUPERFAMILY SSF101904 502 745 1.57E-50 T 23-04-2016 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 34.388 T 23-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS02145 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:3.30.1360.40 242 335 1.6E-23 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PANTHER PTHR11739 18 384 1.9E-141 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 Pfam PF00285 Citrate synthase, C-terminal domain 18 366 3.4E-108 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 Gene3D G3DSA:1.10.230.10 247 331 2.1E-24 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PANTHER PTHR11739:SF4 18 384 1.9E-141 T 23-04-2016 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 SUPERFAMILY SSF48256 18 384 1.15E-115 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 17 384 1.0E-145 T 23-04-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 Gene3D G3DSA:1.10.580.10 23 246 3.6E-71 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PIRSF PIRSF001369 11 384 7.3E-103 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 185 200 7.9E-35 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 260 280 7.9E-35 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 337 351 7.9E-35 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 135 148 7.9E-35 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 317 333 7.9E-35 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 207 235 7.9E-35 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS12780 55f6c42912230931530a48e95ff99958 384 ProSitePatterns PS00480 Citrate synthase signature. 267 279 - T 23-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 THIMO_RS13550 19967b1766001f5ef0fb87fac02183c3 118 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 118 6.1E-40 T 23-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13550 19967b1766001f5ef0fb87fac02183c3 118 PANTHER PTHR12899 1 118 4.4E-45 T 23-04-2016 THIMO_RS13550 19967b1766001f5ef0fb87fac02183c3 118 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 118 7.2E-40 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13550 19967b1766001f5ef0fb87fac02183c3 118 SUPERFAMILY SSF53137 3 116 7.85E-52 T 23-04-2016 THIMO_RS13550 19967b1766001f5ef0fb87fac02183c3 118 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 118 26.089 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13550 19967b1766001f5ef0fb87fac02183c3 118 Gene3D G3DSA:3.30.420.100 24 118 1.6E-36 T 23-04-2016 THIMO_RS04565 f77b8a527f2695ae131917f00315f512 232 PANTHER PTHR34322 2 143 2.4E-36 T 23-04-2016 THIMO_RS04565 f77b8a527f2695ae131917f00315f512 232 Pfam PF01797 Transposase IS200 like 12 122 1.3E-18 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS04565 f77b8a527f2695ae131917f00315f512 232 SUPERFAMILY SSF143422 2 127 1.83E-34 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS04565 f77b8a527f2695ae131917f00315f512 232 PANTHER PTHR34322:SF1 2 143 2.4E-36 T 23-04-2016 THIMO_RS04565 f77b8a527f2695ae131917f00315f512 232 Gene3D G3DSA:3.30.70.1290 8 127 1.1E-16 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS04565 f77b8a527f2695ae131917f00315f512 232 SMART SM01321 9 124 5.4E-46 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PANTHER PTHR24314:SF6 5 262 1.4E-46 T 23-04-2016 THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.5E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 Pfam PF00106 short chain dehydrogenase 5 195 4.3E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PANTHER PTHR24314 5 262 1.4E-46 T 23-04-2016 THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.5E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.5E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 SUPERFAMILY SSF51735 1 226 2.0E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15350 08b77043220aedb8fd56d0fa7865d130 262 Gene3D G3DSA:3.40.50.720 3 208 1.2E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 PANTHER PTHR33751 70 239 1.2E-27 T 23-04-2016 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Gene3D G3DSA:1.10.760.10 60 140 4.4E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Pfam PF00034 Cytochrome c 63 139 9.7E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 SUPERFAMILY SSF46626 59 141 1.39E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 152 229 4.2E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Gene3D G3DSA:1.10.760.10 152 232 1.3E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 PANTHER PTHR33751:SF3 70 239 1.2E-27 T 23-04-2016 THIMO_RS13375 e4fd7c11d7f48cd55f191a00c40cc5fc 250 SUPERFAMILY SSF46626 150 232 1.72E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS01890 3a654153a572937cd4366023bae1aa71 174 PANTHER PTHR36449 1 174 2.5E-34 T 23-04-2016 THIMO_RS01890 3a654153a572937cd4366023bae1aa71 174 Pfam PF13673 Acetyltransferase (GNAT) domain 42 147 2.1E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS01890 3a654153a572937cd4366023bae1aa71 174 Gene3D G3DSA:3.40.630.30 38 147 1.2E-15 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS01890 3a654153a572937cd4366023bae1aa71 174 SUPERFAMILY SSF55729 22 149 4.96E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08575 09617ad50508b6dd84b76a5b415862a2 78 Pfam PF04023 FeoA domain 3 72 3.5E-17 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 THIMO_RS08575 09617ad50508b6dd84b76a5b415862a2 78 SUPERFAMILY SSF50037 7 75 1.42E-19 T 23-04-2016 IPR008988 Transcriptional repressor, C-terminal THIMO_RS08575 09617ad50508b6dd84b76a5b415862a2 78 PANTHER PTHR33238 4 77 1.9E-19 T 23-04-2016 THIMO_RS08575 09617ad50508b6dd84b76a5b415862a2 78 SMART SM00899 3 76 5.1E-20 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 THIMO_RS03150 29cd54c3723467ab122dca756014bc9b 405 Pfam PF03239 Iron permease FTR1 family 61 253 1.5E-19 T 23-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 THIMO_RS03150 29cd54c3723467ab122dca756014bc9b 405 PANTHER PTHR31632:SF4 126 371 2.5E-63 T 23-04-2016 THIMO_RS03150 29cd54c3723467ab122dca756014bc9b 405 PANTHER PTHR31632 126 371 2.5E-63 T 23-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 THIMO_RS08055 cd05bce6f4b610eb8ce4260122c4a2b2 205 SUPERFAMILY SSF64288 42 202 1.65E-30 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain THIMO_RS08055 cd05bce6f4b610eb8ce4260122c4a2b2 205 Pfam PF01947 Protein of unknown function (DUF98) 50 201 7.2E-13 T 23-04-2016 IPR002800 Protein of unknown function DUF98 THIMO_RS08055 cd05bce6f4b610eb8ce4260122c4a2b2 205 Gene3D G3DSA:3.40.1410.10 41 203 1.3E-37 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 SUPERFAMILY SSF52540 183 445 1.83E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 436 445 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 SUPERFAMILY SSF50615 5 72 8.63E-6 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:1.10.1140.10 456 536 2.0E-8 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 87 214 1.0E-41 T 23-04-2016 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:3.40.50.300 75 89 5.0E-97 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:3.40.50.300 187 445 5.0E-97 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 PANTHER PTHR15184:SF7 6 96 7.7E-213 T 23-04-2016 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 PANTHER PTHR15184:SF7 194 593 7.7E-213 T 23-04-2016 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 PANTHER PTHR15184:SF7 136 141 7.7E-213 T 23-04-2016 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 5 597 48.266 T 23-04-2016 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 SUPERFAMILY SSF47917 458 543 1.02E-12 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 12 71 4.8E-7 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 PANTHER PTHR15184 6 96 7.7E-213 T 23-04-2016 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 PANTHER PTHR15184 194 593 7.7E-213 T 23-04-2016 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 PANTHER PTHR15184 136 141 7.7E-213 T 23-04-2016 THIMO_RS07125 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 224 445 3.4E-89 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 Pfam PF01174 SNO glutamine amidotransferase family 6 183 6.0E-41 T 23-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 PANTHER PTHR31559 4 183 2.2E-64 T 23-04-2016 THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 PIRSF PIRSF005639 1 183 4.5E-55 T 23-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 SUPERFAMILY SSF52317 4 183 3.55E-39 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 PANTHER PTHR31559:SF0 4 183 2.2E-64 T 23-04-2016 THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 183 1.1E-52 T 23-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 THIMO_RS04175 c424068b6c16ab040d3273dc69b53161 183 Gene3D G3DSA:3.40.50.880 4 183 4.1E-56 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS15160 8b3fbf6709c4b8750bccce49baf4310f 349 Pfam PF01791 DeoC/LacD family aldolase 69 325 7.2E-64 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 THIMO_RS15160 8b3fbf6709c4b8750bccce49baf4310f 349 SUPERFAMILY SSF51569 58 242 1.54E-64 T 23-04-2016 THIMO_RS15160 8b3fbf6709c4b8750bccce49baf4310f 349 SUPERFAMILY SSF51569 270 342 1.54E-64 T 23-04-2016 THIMO_RS15160 8b3fbf6709c4b8750bccce49baf4310f 349 SMART SM01133 68 325 1.3E-40 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 THIMO_RS15160 8b3fbf6709c4b8750bccce49baf4310f 349 Gene3D G3DSA:3.20.20.70 54 343 4.4E-96 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PANTHER PTHR32063:SF33 8 1036 1.6E-232 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 Pfam PF00873 AcrB/AcrD/AcrF family 12 1021 2.2E-157 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:1.10.3850.10 810 1024 1.6E-55 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:1.10.3850.10 278 485 3.3E-37 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.2090.10 186 266 4.6E-7 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.2090.10 730 801 2.4E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82714 730 801 2.49E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82866 804 1025 3.66E-42 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82693 48 135 3.14E-21 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PANTHER PTHR32063 8 1036 1.6E-232 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82866 294 487 1.14E-31 T 23-04-2016 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 5.9E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 18 42 5.9E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 5.9E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 5.9E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 46 64 5.9E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82714 186 266 6.41E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS02545 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.70.1430 49 136 1.3E-23 T 23-04-2016 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 1.0E-9 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 179 195 1.0E-9 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 137 154 1.0E-9 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 235 247 1.0E-9 T 23-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PANTHER PTHR13697:SF19 89 374 5.1E-135 T 23-04-2016 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 SUPERFAMILY SSF53784 4 409 1.57E-105 T 23-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PIRSF PIRSF036483 2 416 7.5E-201 T 23-04-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 Gene3D G3DSA:3.40.50.450 4 236 1.4E-48 T 23-04-2016 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 Pfam PF00365 Phosphofructokinase 10 288 8.7E-45 T 23-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 397 44.072 T 23-04-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 THIMO_RS05725 8d7936dcea46b284b6adc3cb15fed591 418 PANTHER PTHR13697 89 374 5.1E-135 T 23-04-2016 THIMO_RS00710 925702648681caa39527bdee4bfd5198 102 Gene3D G3DSA:3.40.1260.10 3 99 9.1E-28 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS00710 925702648681caa39527bdee4bfd5198 102 Pfam PF04077 DsrH like protein 9 98 4.2E-30 T 23-04-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 THIMO_RS00710 925702648681caa39527bdee4bfd5198 102 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 4 101 6.0E-33 T 23-04-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 THIMO_RS00710 925702648681caa39527bdee4bfd5198 102 SUPERFAMILY SSF75169 3 101 1.19E-30 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS00710 925702648681caa39527bdee4bfd5198 102 PANTHER PTHR37526 3 101 5.2E-20 T 23-04-2016 THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 PANTHER PTHR10108:SF721 8 229 9.8E-28 T 23-04-2016 THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 PANTHER PTHR10108 8 229 9.8E-28 T 23-04-2016 THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 TIGRFAM TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase 10 230 7.1E-76 T 23-04-2016 IPR010251 Magnesium-protoporphyrin IX methyltransferase GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 Pfam PF03602 Conserved hypothetical protein 95 40 97 9.1E-7 T 23-04-2016 THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 Gene3D G3DSA:3.40.50.150 9 163 6.0E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 SUPERFAMILY SSF53335 4 169 1.51E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14375 41872bef054fd089d23d0e9bdee78345 233 Pfam PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus 132 230 1.3E-34 T 23-04-2016 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 Pfam PF03441 FAD binding domain of DNA photolyase 274 473 3.2E-82 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 PANTHER PTHR11455:SF18 1 478 3.8E-194 T 23-04-2016 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 343 361 3.3E-16 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 142 158 3.3E-16 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 323 339 3.3E-16 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 382 396 3.3E-16 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 Gene3D G3DSA:3.40.50.620 2 146 3.6E-43 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 SUPERFAMILY SSF48173 193 477 2.62E-108 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 Pfam PF00875 DNA photolyase 5 169 2.5E-46 T 23-04-2016 IPR006050 DNA photolyase, N-terminal THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 PANTHER PTHR11455 1 478 3.8E-194 T 23-04-2016 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 SUPERFAMILY SSF52425 4 208 8.11E-48 T 23-04-2016 IPR006050 DNA photolyase, N-terminal THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 Gene3D G3DSA:1.10.579.10 284 476 3.9E-78 T 23-04-2016 THIMO_RS11650 8a49d2d762e11090160185c7e48aef87 479 Gene3D G3DSA:1.25.40.80 147 283 9.4E-34 T 23-04-2016 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PRINTS PR00604 Class IA and IB cytochrome C signature 37 52 7.4E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PRINTS PR00604 Class IA and IB cytochrome C signature 86 96 7.4E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PRINTS PR00604 Class IA and IB cytochrome C signature 53 63 7.4E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PRINTS PR00604 Class IA and IB cytochrome C signature 24 31 7.4E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PRINTS PR00604 Class IA and IB cytochrome C signature 103 111 7.4E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PRINTS PR00604 Class IA and IB cytochrome C signature 67 83 7.4E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 PANTHER PTHR11961 9 122 9.9E-24 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 Pfam PF00034 Cytochrome c 16 112 2.2E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 SUPERFAMILY SSF46626 12 115 4.73E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS18465 df834c5f8f02629b195197519235979b 277 Gene3D G3DSA:1.10.760.10 12 114 1.8E-31 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS04965 165d4aa6a1da7d984fc84baf954b3fee 301 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 77 99 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site THIMO_RS04965 165d4aa6a1da7d984fc84baf954b3fee 301 Pfam PF01040 UbiA prenyltransferase family 38 280 4.9E-63 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 THIMO_RS04965 165d4aa6a1da7d984fc84baf954b3fee 301 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 15 298 30.026 T 23-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 THIMO_RS04965 165d4aa6a1da7d984fc84baf954b3fee 301 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 21 297 2.6E-105 T 23-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 THIMO_RS04965 165d4aa6a1da7d984fc84baf954b3fee 301 PANTHER PTHR11048 10 299 3.6E-85 T 23-04-2016 THIMO_RS06730 0922e2564a0ac01ded5ecf9627fa91d9 225 SMART SM00388 32 98 0.0016 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS06730 0922e2564a0ac01ded5ecf9627fa91d9 225 SUPERFAMILY SSF47384 31 94 1.57E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS06730 0922e2564a0ac01ded5ecf9627fa91d9 225 Gene3D G3DSA:1.10.287.130 33 90 7.1E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 Gene3D G3DSA:3.40.50.1000 184 262 7.2E-38 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 Gene3D G3DSA:3.40.50.1000 5 77 7.2E-38 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 108 4.2E-22 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 Pfam PF13242 HAD-hyrolase-like 183 254 1.1E-19 T 23-04-2016 THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 Gene3D G3DSA:3.40.50.10410 78 183 1.6E-21 T 23-04-2016 IPR023215 Nitrophenylphosphatase-like domain THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 SUPERFAMILY SSF56784 8 258 7.2E-55 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 233 8.8E-41 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA THIMO_RS00830 922e09ca9f9f752e00977c4036b4dd26 272 PANTHER PTHR19288 8 269 5.1E-71 T 23-04-2016 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 201 242 7.2E-11 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 250 287 5.6E-10 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 Gene3D G3DSA:1.10.1130.10 103 185 3.5E-7 T 23-04-2016 IPR012286 Tetrahaem cytochrome domain THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 PANTHER PTHR35038 1 327 4.6E-51 T 23-04-2016 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 SUPERFAMILY SSF48695 59 327 1.51E-46 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 155 193 9.0E-7 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 201 243 1.7E-13 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 250 285 4.0E-11 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 Gene3D G3DSA:1.10.3820.10 54 102 3.8E-4 T 23-04-2016 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 Gene3D G3DSA:1.10.3820.10 186 319 7.0E-21 T 23-04-2016 THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 TIGRFAM TIGR03508 decahem_SO: decaheme c-type cytochrome, DmsE family 61 327 7.6E-79 T 23-04-2016 IPR020015 Decaheme cytochrome, c-type, DmsE THIMO_RS13390 81c3e6c941e73d6781b76809b1190e71 334 PANTHER PTHR35038:SF3 1 327 4.6E-51 T 23-04-2016 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 SUPERFAMILY SSF69055 298 391 3.14E-29 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 Gene3D G3DSA:1.10.1740.10 308 391 7.9E-30 T 23-04-2016 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 5.1E-44 T 23-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 390 47.009 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 PANTHER PTHR30525 4 396 2.4E-210 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 234 1.6E-37 T 23-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 Gene3D G3DSA:3.40.50.720 4 150 3.4E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS03475 9addd8007721944025c160ea20aea943 396 PIRSF PIRSF006205 2 395 3.1E-149 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 SUPERFAMILY SSF55347 126 269 2.98E-60 T 23-04-2016 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 391 1.7E-149 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS03475 9addd8007721944025c160ea20aea943 396 SUPERFAMILY SSF51735 3 150 9.3E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS03475 9addd8007721944025c160ea20aea943 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 266 385 5.2E-42 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS13620 e86472f8d03cffb5a11007bf916db5cd 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 20.707 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13620 e86472f8d03cffb5a11007bf916db5cd 97 Pfam PF00276 Ribosomal protein L23 8 94 4.8E-29 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13620 e86472f8d03cffb5a11007bf916db5cd 97 SUPERFAMILY SSF54189 1 92 1.55E-27 T 23-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13620 e86472f8d03cffb5a11007bf916db5cd 97 Gene3D G3DSA:3.30.70.330 5 94 1.8E-30 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 THIMO_RS13620 e86472f8d03cffb5a11007bf916db5cd 97 PANTHER PTHR11620 8 94 1.5E-16 T 23-04-2016 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 SUPERFAMILY SSF53756 164 654 1.13E-100 T 23-04-2016 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 Hamap MF_00484 Glycogen synthase [glgA]. 166 652 38.295 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 Pfam PF08323 Starch synthase catalytic domain 168 408 1.2E-63 T 23-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 Gene3D G3DSA:3.40.50.2000 422 633 1.0E-68 T 23-04-2016 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 168 651 6.0E-157 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 Pfam PF00534 Glycosyl transferases group 1 460 619 8.7E-10 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 PANTHER PTHR12526:SF304 166 652 2.1E-176 T 23-04-2016 THIMO_RS16350 35e92c0fe0993e8ddea823f97f1cad87 655 PANTHER PTHR12526 166 652 2.1E-176 T 23-04-2016 THIMO_RS14095 fba9b1370f3cadea63ad7eec1065eca6 132 Pfam PF00717 Peptidase S24-like 25 90 4.1E-6 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B THIMO_RS14095 fba9b1370f3cadea63ad7eec1065eca6 132 SUPERFAMILY SSF51306 20 103 1.03E-15 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C THIMO_RS14095 fba9b1370f3cadea63ad7eec1065eca6 132 Gene3D G3DSA:2.10.109.10 20 105 1.6E-17 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.40.50.300 814 989 2.1E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 23 360 6.37E-100 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM00487 626 813 3.0E-33 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF00271 Helicase conserved C-terminal domain 830 935 8.8E-17 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM01058 505 602 3.1E-50 T 23-04-2016 IPR003711 CarD-like/TRCF domain THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.40.50.300 617 812 1.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF02559 CarD-like/TRCF domain 506 601 7.5E-24 T 23-04-2016 IPR003711 CarD-like/TRCF domain THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.30.2060.10 154 229 4.8E-12 T 23-04-2016 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF141259 496 574 4.58E-24 T 23-04-2016 IPR003711 CarD-like/TRCF domain THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 40 1167 29.056 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 170 1108 0.0 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 549 810 6.12E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 PANTHER PTHR14025 410 1168 0.0 T 23-04-2016 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 808 1016 1.01E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF00270 DEAD/DEAH box helicase 631 791 6.2E-18 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM00982 1034 1134 1.5E-47 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 378 492 4.2E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 PANTHER PTHR14025:SF21 410 1168 0.0 T 23-04-2016 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF03461 TRCF domain 1035 1128 3.6E-26 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM00490 852 936 3.6E-16 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS11305 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF143517 1021 1172 2.35E-42 T 23-04-2016 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 138 291 9.6E-10 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624:SF67 550 764 0.0 T 23-04-2016 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624:SF67 783 866 0.0 T 23-04-2016 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624:SF67 360 451 0.0 T 23-04-2016 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624:SF67 72 291 0.0 T 23-04-2016 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624:SF67 468 532 0.0 T 23-04-2016 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624 550 764 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624 783 866 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624 360 451 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624 72 291 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PANTHER PTHR11624 468 532 0.0 T 23-04-2016 IPR033247 Transketolase family THIMO_RS05175 ee83644824e101e35cd4232954722811 884 Gene3D G3DSA:3.40.50.920 704 882 5.6E-75 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 SUPERFAMILY SSF52518 55 465 1.32E-144 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS05175 ee83644824e101e35cd4232954722811 884 SUPERFAMILY SSF52518 469 697 1.53E-96 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS05175 ee83644824e101e35cd4232954722811 884 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 4 882 0.0 T 23-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 Gene3D G3DSA:3.40.50.970 55 465 2.2E-157 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS05175 ee83644824e101e35cd4232954722811 884 SUPERFAMILY SSF52922 698 883 1.34E-61 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 PIRSF PIRSF000156 1 884 0.0 T 23-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 THIMO_RS05175 ee83644824e101e35cd4232954722811 884 Gene3D G3DSA:3.40.50.970 470 701 4.6E-119 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 23-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 Gene3D G3DSA:2.20.28.10 1 53 9.2E-27 T 23-04-2016 IPR004039 Rubredoxin-type fold THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 PRINTS PR00163 Rubredoxin signature 33 49 2.16E-8 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 PRINTS PR00163 Rubredoxin signature 3 19 2.16E-8 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 PIRSF PIRSF000071 1 54 2.1E-25 T 23-04-2016 IPR024922 Rubredoxin GO:0005506|GO:0009055 THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 Pfam PF00301 Rubredoxin 3 49 3.1E-22 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 THIMO_RS00340 fe0b9e4d643bca1d9040c2886f8bd3ca 54 SUPERFAMILY SSF57802 1 53 2.36E-22 T 23-04-2016 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 Pfam PF04356 Protein of unknown function (DUF489) 7 196 7.4E-67 T 23-04-2016 IPR007451 Uncharacterised protein family UPF0274 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 PANTHER PTHR38100 2 206 4.0E-56 T 23-04-2016 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 PANTHER PTHR38100:SF1 2 206 4.0E-56 T 23-04-2016 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 10 192 8.0E-38 T 23-04-2016 IPR007451 Uncharacterised protein family UPF0274 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 SUPERFAMILY SSF101322 4 205 4.71E-58 T 23-04-2016 IPR007451 Uncharacterised protein family UPF0274 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 Gene3D G3DSA:1.10.3890.10 3 205 2.4E-69 T 23-04-2016 IPR007451 Uncharacterised protein family UPF0274 THIMO_RS10035 31613c0bc9228abf1a7693d83bed72ea 211 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 204 30.852 T 23-04-2016 IPR007451 Uncharacterised protein family UPF0274 THIMO_RS11545 1470b86611f845b673656cdecce2afe4 157 PIRSF PIRSF019239 1 157 1.8E-40 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 THIMO_RS11545 1470b86611f845b673656cdecce2afe4 157 PANTHER PTHR34584 9 157 2.5E-38 T 23-04-2016 THIMO_RS11545 1470b86611f845b673656cdecce2afe4 157 PANTHER PTHR34584:SF2 9 157 2.5E-38 T 23-04-2016 THIMO_RS11545 1470b86611f845b673656cdecce2afe4 157 Pfam PF01899 Na+/H+ ion antiporter subunit 9 157 1.8E-44 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 SMART SM00986 86 234 5.3E-43 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 72 240 7.1E-65 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 SMART SM00987 86 234 5.3E-43 T 23-04-2016 THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 SUPERFAMILY SSF52141 61 241 1.47E-66 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 PANTHER PTHR33693 61 248 1.0E-85 T 23-04-2016 THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 Gene3D G3DSA:3.40.470.10 61 242 3.4E-74 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 PANTHER PTHR33693:SF1 61 248 1.0E-85 T 23-04-2016 THIMO_RS16000 4c6d3e7237f8dc70287880fb70ea1962 250 Pfam PF03167 Uracil DNA glycosylase superfamily 86 234 3.0E-48 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 109 122 2.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 159 2.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 161 181 2.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 SUPERFAMILY SSF56784 1 221 1.52E-40 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 PANTHER PTHR18901:SF21 2 256 4.4E-65 T 23-04-2016 THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 Gene3D G3DSA:3.40.50.1000 2 213 1.4E-34 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 196 1.3E-26 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 35 196 9.2E-12 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS01865 af23eba1fc15e12e13a739359d12fbf9 256 PANTHER PTHR18901 2 256 4.4E-65 T 23-04-2016 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PANTHER PTHR10264:SF80 12 285 2.3E-92 T 23-04-2016 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PIRSF PIRSF005651 1 289 9.9E-91 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 SMART SM00244 21 184 4.1E-36 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 Pfam PF01145 SPFH domain / Band 7 family 25 197 4.2E-31 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 76 97 3.6E-7 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 179 200 3.6E-7 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 160 178 3.6E-7 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 28 50 3.6E-7 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 PANTHER PTHR10264 12 285 2.3E-92 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 SUPERFAMILY SSF117892 53 190 3.53E-30 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS11425 4efaa1590b10e0264bb0a8285a542246 289 TIGRFAM TIGR01932 hflC: HflC protein 154 283 5.9E-46 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 PANTHER PTHR24221:SF250 14 599 1.7E-302 T 23-04-2016 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 SUPERFAMILY SSF52540 345 591 7.64E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 Pfam PF00664 ABC transporter transmembrane region 37 308 6.0E-35 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 PANTHER PTHR24221 14 599 1.7E-302 T 23-04-2016 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 Gene3D G3DSA:3.40.50.300 355 585 1.8E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 Pfam PF00005 ABC transporter 371 520 1.1E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 Gene3D G3DSA:1.20.1560.10 24 343 4.4E-62 T 23-04-2016 THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 SMART SM00382 380 560 2.1E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14090 b1441e44c1ab8b0050e96f5096fa40bf 607 SUPERFAMILY SSF90123 22 343 1.31E-60 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 PANTHER PTHR30519:SF0 1 763 0.0 T 23-04-2016 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 434 756 4.9E-153 T 23-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 SUPERFAMILY SSF51726 3 397 4.32E-113 T 23-04-2016 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 Gene3D G3DSA:3.20.20.210 4 393 1.1E-154 T 23-04-2016 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 Gene3D G3DSA:3.20.20.210 395 762 2.2E-131 T 23-04-2016 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 PANTHER PTHR30519 1 763 0.0 T 23-04-2016 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 318 1.4E-114 T 23-04-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 PIRSF PIRSF000382 1 763 0.0 T 23-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 SUPERFAMILY SSF51726 399 759 4.97E-119 T 23-04-2016 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 760 0.0 T 23-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 THIMO_RS06960 6cd16cbb953894c05d31da1c6c93835f 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 761 37.416 T 23-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 THIMO_RS09335 8ede8528c5723d082900e5578ffaed35 225 Pfam PF13511 Domain of unknown function (DUF4124) 11 57 4.5E-7 T 23-04-2016 IPR025392 Domain of unknown function DUF4124 THIMO_RS09335 8ede8528c5723d082900e5578ffaed35 225 Gene3D G3DSA:1.10.530.10 81 212 1.4E-42 T 23-04-2016 THIMO_RS09335 8ede8528c5723d082900e5578ffaed35 225 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 113 141 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 THIMO_RS09335 8ede8528c5723d082900e5578ffaed35 225 PANTHER PTHR21666 75 214 7.8E-32 T 23-04-2016 THIMO_RS09335 8ede8528c5723d082900e5578ffaed35 225 Pfam PF01464 Transglycosylase SLT domain 96 193 4.1E-25 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS09335 8ede8528c5723d082900e5578ffaed35 225 SUPERFAMILY SSF53955 84 214 4.93E-43 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS10345 da973c05cfc759453efaf7fa074cf664 847 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 286 6.1E-8 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain THIMO_RS10345 da973c05cfc759453efaf7fa074cf664 847 PANTHER PTHR30290 53 373 1.5E-33 T 23-04-2016 THIMO_RS10345 da973c05cfc759453efaf7fa074cf664 847 Gene3D G3DSA:3.10.105.10 121 352 4.9E-20 T 23-04-2016 THIMO_RS10345 da973c05cfc759453efaf7fa074cf664 847 PANTHER PTHR30290:SF29 53 373 1.5E-33 T 23-04-2016 THIMO_RS10345 da973c05cfc759453efaf7fa074cf664 847 SUPERFAMILY SSF53850 51 364 3.62E-21 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:1.10.1060.10 44 148 7.6E-22 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:1.10.1060.10 558 649 2.8E-14 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF54862 48 63 3.89E-17 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF54862 562 649 3.89E-17 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PANTHER PTHR11938:SF99 331 477 2.7E-58 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PANTHER PTHR11938:SF99 49 298 2.7E-58 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PANTHER PTHR11938 331 477 2.7E-58 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PANTHER PTHR11938 49 298 2.7E-58 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 46 135 3.5E-13 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 2.5E-16 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 147 169 2.5E-16 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 170 183 2.5E-16 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 280 294 2.5E-16 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.40.50.720 149 236 4.9E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.40.50.720 416 506 4.9E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.50.50.60 237 301 4.5E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.50.50.60 318 415 1.8E-17 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Pfam PF12838 4Fe-4S dicluster domain 596 645 8.0E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF46548 47 156 4.03E-16 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 632 643 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 596 607 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF51971 144 300 5.24E-48 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF51971 333 416 5.24E-48 T 23-04-2016 THIMO_RS00730 9e86afbd817778925d34889688163aa8 653 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 466 4.7E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 Pfam PF00270 DEAD/DEAH box helicase 78 246 3.9E-27 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 Gene3D G3DSA:3.40.50.300 59 261 9.1E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 Pfam PF09369 Domain of unknown function (DUF1998) 674 778 1.7E-10 T 23-04-2016 IPR018973 DEAD/DEAH-box helicase, putative THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 Pfam PF00271 Helicase conserved C-terminal domain 305 408 3.6E-11 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 SMART SM00490 322 410 4.0E-13 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 PANTHER PTHR24031 60 597 1.9E-126 T 23-04-2016 THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 SMART SM00487 72 276 5.7E-29 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 SUPERFAMILY SSF52540 277 417 1.85E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 SUPERFAMILY SSF52540 85 248 1.85E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 PANTHER PTHR24031:SF122 60 597 1.9E-126 T 23-04-2016 THIMO_RS03240 5f59af6bcfe80df9d4d4adda07b17b17 806 Gene3D G3DSA:3.40.50.300 301 454 2.3E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 Gene3D G3DSA:3.30.70.560 4 156 3.1E-53 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 2.9E-40 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 PANTHER PTHR20941 4 161 1.6E-60 T 23-04-2016 THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 3.2E-37 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 SUPERFAMILY SSF55083 3 152 3.14E-49 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS16700 0976ba0463ea5707f01f57c49f24903a 178 PANTHER PTHR20941:SF10 4 161 1.6E-60 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 2.0E-63 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 2.0E-63 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 2.0E-63 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 2.0E-63 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 2.0E-63 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 SUPERFAMILY SSF53067 153 341 4.99E-48 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.30.420.40 9 163 5.6E-46 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.30.420.40 164 190 1.5E-31 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.30.420.40 267 321 1.5E-31 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.90.640.10 191 263 1.7E-28 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 Pfam PF06723 MreB/Mbl protein 11 337 4.6E-144 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PANTHER PTHR19375:SF117 9 336 9.9E-178 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 PANTHER PTHR19375 9 336 9.9E-178 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 SUPERFAMILY SSF53067 9 152 7.92E-38 T 23-04-2016 THIMO_RS13260 af82018835e60d0f3afcd3c99c8e5cd7 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 1.7E-157 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 THIMO_RS13050 cf7d77c99a8ead735b8ab2e4e470d89d 216 PANTHER PTHR11220 27 208 2.8E-27 T 23-04-2016 IPR006917 SOUL haem-binding protein THIMO_RS13050 cf7d77c99a8ead735b8ab2e4e470d89d 216 SUPERFAMILY SSF55136 21 207 1.15E-46 T 23-04-2016 IPR011256 Regulatory factor, effector binding domain THIMO_RS13050 cf7d77c99a8ead735b8ab2e4e470d89d 216 PANTHER PTHR11220:SF35 27 208 2.8E-27 T 23-04-2016 THIMO_RS13050 cf7d77c99a8ead735b8ab2e4e470d89d 216 Pfam PF04832 SOUL heme-binding protein 28 206 2.2E-40 T 23-04-2016 IPR006917 SOUL haem-binding protein THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 SUPERFAMILY SSF53335 12 221 2.03E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 20 36 4.6E-13 T 23-04-2016 THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 108 120 4.6E-13 T 23-04-2016 THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 44 58 4.6E-13 T 23-04-2016 THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 147 171 4.6E-13 T 23-04-2016 THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 Pfam PF02384 N-6 DNA Methylase 7 170 1.7E-6 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 Gene3D G3DSA:3.40.50.150 22 219 8.2E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16520 7ef1eef98ffcd017c68b794adce31e67 579 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 111 117 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS07820 5c5b56a49fa0212c6a0778df6af8b912 98 PANTHER PTHR10029 18 82 7.1E-23 T 23-04-2016 THIMO_RS07820 5c5b56a49fa0212c6a0778df6af8b912 98 ProSitePatterns PS00150 Acylphosphatase signature 1. 18 28 - T 23-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS07820 5c5b56a49fa0212c6a0778df6af8b912 98 Gene3D G3DSA:3.30.70.100 12 96 2.6E-25 T 23-04-2016 THIMO_RS07820 5c5b56a49fa0212c6a0778df6af8b912 98 Pfam PF00708 Acylphosphatase 14 96 6.7E-21 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS07820 5c5b56a49fa0212c6a0778df6af8b912 98 SUPERFAMILY SSF54975 9 96 6.76E-25 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS07820 5c5b56a49fa0212c6a0778df6af8b912 98 ProSitePatterns PS00151 Acylphosphatase signature 2. 42 58 - T 23-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 41.826 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 Pfam PF13932 GidA associated domain 403 615 5.3E-70 T 23-04-2016 IPR026904 GidA associated domain 3 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 23-04-2016 IPR020595 MnmG-related, conserved site THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 5.0E-262 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 PANTHER PTHR11806:SF0 1 622 0.0 T 23-04-2016 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 PANTHER PTHR11806 1 622 0.0 T 23-04-2016 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 SUPERFAMILY SSF51905 6 66 1.35E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 SUPERFAMILY SSF51905 97 261 1.35E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 23-04-2016 IPR020595 MnmG-related, conserved site THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 Gene3D G3DSA:3.50.50.60 7 232 5.9E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 Pfam PF01134 Glucose inhibited division protein A 8 398 1.1E-158 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 THIMO_RS05545 e4629aeeb4929278d3e44c4d354b02d5 624 SMART SM01228 546 617 2.9E-43 T 23-04-2016 THIMO_RS14150 b73a17d28e9b07b8c1c913b6d50630de 417 SUPERFAMILY SSF103473 17 395 1.05E-57 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS14150 b73a17d28e9b07b8c1c913b6d50630de 417 PANTHER PTHR23510:SF6 16 396 1.2E-113 T 23-04-2016 THIMO_RS14150 b73a17d28e9b07b8c1c913b6d50630de 417 PANTHER PTHR23510 16 396 1.2E-113 T 23-04-2016 THIMO_RS14150 b73a17d28e9b07b8c1c913b6d50630de 417 Pfam PF07690 Major Facilitator Superfamily 26 355 1.7E-33 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 THIMO_RS14150 b73a17d28e9b07b8c1c913b6d50630de 417 Gene3D G3DSA:1.20.1250.20 18 198 1.8E-28 T 23-04-2016 THIMO_RS14150 b73a17d28e9b07b8c1c913b6d50630de 417 Gene3D G3DSA:1.20.1250.20 216 398 3.3E-16 T 23-04-2016 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 SUPERFAMILY SSF52096 179 262 3.31E-63 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 SUPERFAMILY SSF52096 355 549 3.31E-63 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 237 318 2.8E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 PANTHER PTHR32060:SF11 1 616 1.8E-208 T 23-04-2016 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 SMART SM00228 244 322 3.6E-6 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 PANTHER PTHR32060 1 616 1.8E-208 T 23-04-2016 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 Pfam PF03572 Peptidase family S41 361 542 2.8E-49 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 550 685 1.6E-25 T 23-04-2016 IPR020992 Tail specific protease, C-terminal THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 197 560 1.1E-87 T 23-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 Gene3D G3DSA:3.90.226.10 337 547 1.5E-61 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 Gene3D G3DSA:3.90.226.10 663 687 1.5E-61 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 SMART SM00245 327 545 2.0E-56 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 SUPERFAMILY SSF50156 242 321 5.19E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS10460 f17475d2466317cf9d172c494b3bbf71 700 Gene3D G3DSA:2.30.42.10 244 336 4.4E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 SUPERFAMILY SSF56524 74 304 9.94E-63 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 SUPERFAMILY SSF81296 317 431 1.96E-32 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 Gene3D G3DSA:2.60.40.650 317 431 7.7E-30 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 Pfam PF00174 Oxidoreductase molybdopterin binding domain 115 285 9.0E-48 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 266 279 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 399 411 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 178 193 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 250 263 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 412 425 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 100 116 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 314 326 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 80 94 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 354 366 1.1E-24 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 313 430 2.3E-19 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 PANTHER PTHR19372 72 432 1.6E-81 T 23-04-2016 THIMO_RS14160 817fca173cb2fce8ff1c27a4990134b6 432 Gene3D G3DSA:3.90.420.10 75 304 1.6E-67 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 PANTHER PTHR11019:SF75 24 222 6.3E-34 T 23-04-2016 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 SUPERFAMILY SSF46689 180 227 9.41E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 Pfam PF12833 Helix-turn-helix domain 151 224 6.6E-16 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 PANTHER PTHR11019 24 222 6.3E-34 T 23-04-2016 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 SUPERFAMILY SSF46689 130 177 4.93E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 180 221 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 SMART SM00342 143 225 7.1E-16 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 Gene3D G3DSA:1.10.10.60 182 226 2.2E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14945 efd7c3177027c9f94b46e47849864b2b 231 Gene3D G3DSA:1.10.10.60 130 181 1.2E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 Gene3D G3DSA:3.30.70.20 179 230 4.3E-14 T 23-04-2016 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 Gene3D G3DSA:3.30.70.20 231 284 6.9E-11 T 23-04-2016 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 Pfam PF12838 4Fe-4S dicluster domain 146 190 1.1E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 12 199 1.4E-27 T 23-04-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 SUPERFAMILY SSF54862 221 280 1.37E-10 T 23-04-2016 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 SUPERFAMILY SSF54862 146 196 5.2E-14 T 23-04-2016 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 Pfam PF04060 Putative Fe-S cluster 48 81 1.2E-10 T 23-04-2016 IPR007202 4Fe-4S domain GO:0051536 THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 221 232 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 176 187 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01100 bf717f3fe537d77b2bd6ce441f7934e0 302 Gene3D G3DSA:3.30.70.20 146 178 4.7E-12 T 23-04-2016 THIMO_RS04125 48024de0859d23f9527bdaf915cf397a 214 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 53 170 1.1E-34 T 23-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated THIMO_RS04125 48024de0859d23f9527bdaf915cf397a 214 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 16 204 1.8E-63 T 23-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated THIMO_RS04125 48024de0859d23f9527bdaf915cf397a 214 Gene3D G3DSA:3.90.550.10 17 187 3.2E-28 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS04125 48024de0859d23f9527bdaf915cf397a 214 SUPERFAMILY SSF53448 18 212 3.09E-39 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS04125 48024de0859d23f9527bdaf915cf397a 214 PANTHER PTHR36529 1 212 3.6E-46 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SUPERFAMILY SSF48452 246 503 1.39E-27 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Gene3D G3DSA:1.25.40.10 583 684 1.9E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SUPERFAMILY SSF48452 49 218 1.37E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 PANTHER PTHR23083 664 703 3.6E-67 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 PANTHER PTHR23083 741 798 3.6E-67 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 PANTHER PTHR23083 36 214 3.6E-67 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 PANTHER PTHR23083 388 470 3.6E-67 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 PANTHER PTHR23083 539 629 3.6E-67 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF13432 Tetratricopeptide repeat 567 628 2.7E-9 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF13432 Tetratricopeptide repeat 469 529 0.013 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF13432 Tetratricopeptide repeat 742 800 0.0011 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF13432 Tetratricopeptide repeat 365 426 2.7E-7 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Gene3D G3DSA:1.25.40.10 685 803 1.7E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Gene3D G3DSA:1.25.40.10 48 304 1.6E-42 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF13174 Tetratricopeptide repeat 429 459 0.077 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF14559 Tetratricopeptide repeat 165 223 9.1E-8 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Pfam PF14559 Tetratricopeptide repeat 96 159 1.8E-8 T 23-04-2016 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SUPERFAMILY SSF48452 509 701 2.32E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 Gene3D G3DSA:1.25.40.10 359 582 2.7E-35 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 736 769 51.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 563 596 32.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 220 253 380.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 427 460 2.3 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 597 630 1.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 770 803 10.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 529 562 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 84 117 7.4E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 152 185 0.034 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 254 287 150.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 393 426 16.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 665 698 32.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 186 219 6.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 118 151 220.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 359 392 15.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SMART SM00028 50 83 12.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14670 0aaf071e45f111d545405c734b0dece7 817 SUPERFAMILY SSF48452 739 803 2.32E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 SUPERFAMILY SSF52317 153 378 9.02E-63 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 Gene3D G3DSA:3.40.50.880 154 377 2.8E-81 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 Gene3D G3DSA:3.50.30.20 4 138 6.8E-57 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 376 5.9E-143 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 379 48.189 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 307 318 2.8E-37 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 234 248 2.8E-37 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 265 281 2.8E-37 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 195 209 2.8E-37 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 299 2.8E-37 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 SMART SM01097 3 133 2.8E-86 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 131 5.2E-49 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 Pfam PF00117 Glutamine amidotransferase class-I 198 373 3.5E-47 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 350 363 1.2E-10 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 265 276 1.2E-10 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 237 246 1.2E-10 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PANTHER PTHR11405 187 378 1.7E-240 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 PANTHER PTHR11405 3 170 1.7E-240 T 23-04-2016 THIMO_RS01435 f52134095ea574c764af9404e5ffce70 380 SUPERFAMILY SSF52021 3 138 3.92E-54 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 SUPERFAMILY SSF52172 13 141 4.27E-40 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 SMART SM00862 166 242 7.1E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 Pfam PF00072 Response regulator receiver domain 18 126 5.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 Gene3D G3DSA:1.10.10.10 139 242 3.4E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 170 242 5.4E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 SMART SM00448 16 126 1.3E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 PANTHER PTHR26402:SF531 16 242 2.3E-78 T 23-04-2016 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 SUPERFAMILY SSF46894 138 242 3.4E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 PANTHER PTHR26402 16 242 2.3E-78 T 23-04-2016 THIMO_RS14925 9834fc82d017033a4b880cb996a24f56 246 Gene3D G3DSA:3.40.50.2300 16 138 3.8E-38 T 23-04-2016 THIMO_RS07195 cbc4cfc6695f8fe920bad0afdff87032 693 SUPERFAMILY SSF56436 411 687 2.19E-64 T 23-04-2016 IPR016187 C-type lectin fold THIMO_RS07195 cbc4cfc6695f8fe920bad0afdff87032 693 PANTHER PTHR23150 13 33 5.2E-57 T 23-04-2016 THIMO_RS07195 cbc4cfc6695f8fe920bad0afdff87032 693 PANTHER PTHR23150 334 688 5.2E-57 T 23-04-2016 THIMO_RS07195 cbc4cfc6695f8fe920bad0afdff87032 693 Gene3D G3DSA:3.90.1580.10 411 688 8.6E-62 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS07195 cbc4cfc6695f8fe920bad0afdff87032 693 Pfam PF03781 Sulfatase-modifying factor enzyme 1 414 685 1.6E-48 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS00960 f2763f470d38245e4ca9fea267397c52 390 PANTHER PTHR23537:SF1 13 390 1.2E-43 T 23-04-2016 THIMO_RS00960 f2763f470d38245e4ca9fea267397c52 390 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 18 376 8.2E-72 T 23-04-2016 IPR010645 Uncharacterised MFS-type transporter YbfB THIMO_RS00960 f2763f470d38245e4ca9fea267397c52 390 PANTHER PTHR23537 13 390 1.2E-43 T 23-04-2016 THIMO_RS00960 f2763f470d38245e4ca9fea267397c52 390 Gene3D G3DSA:1.20.1250.20 207 384 9.3E-15 T 23-04-2016 THIMO_RS00960 f2763f470d38245e4ca9fea267397c52 390 Gene3D G3DSA:1.20.1250.20 13 193 3.9E-16 T 23-04-2016 THIMO_RS00960 f2763f470d38245e4ca9fea267397c52 390 SUPERFAMILY SSF103473 8 384 1.7E-39 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS03020 e0a6473d4bcb40b5ed28df49750c1903 118 SUPERFAMILY SSF141371 3 89 1.61E-8 T 23-04-2016 THIMO_RS03020 e0a6473d4bcb40b5ed28df49750c1903 118 Pfam PF07238 PilZ domain 4 94 5.2E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 THIMO_RS17380 c8705b79a6c87e78982d20ba57e07d25 288 PANTHER PTHR30177:SF0 25 279 1.2E-63 T 23-04-2016 THIMO_RS17380 c8705b79a6c87e78982d20ba57e07d25 288 Gene3D G3DSA:3.40.190.100 108 235 1.9E-39 T 23-04-2016 THIMO_RS17380 c8705b79a6c87e78982d20ba57e07d25 288 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 25 274 2.2E-64 T 23-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 THIMO_RS17380 c8705b79a6c87e78982d20ba57e07d25 288 PANTHER PTHR30177 25 279 1.2E-63 T 23-04-2016 THIMO_RS17380 c8705b79a6c87e78982d20ba57e07d25 288 Gene3D G3DSA:3.40.190.10 22 106 9.7E-22 T 23-04-2016 THIMO_RS17380 c8705b79a6c87e78982d20ba57e07d25 288 SUPERFAMILY SSF53850 22 287 2.04E-77 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PANTHER PTHR19375 2 649 0.0 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 2.0E-292 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:1.20.1270.10 532 603 1.6E-24 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 645 37.009 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF100920 384 540 1.44E-61 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF53067 4 184 1.65E-64 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.30.30 53 108 2.4E-26 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF53067 187 382 6.75E-68 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 334 350 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 388 407 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 469 485 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 365 385 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 198 208 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.7E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Pfam PF00012 Hsp70 protein 4 603 3.3E-264 T 23-04-2016 IPR013126 Heat shock protein 70 family THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.90.640.10 230 315 8.9E-32 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF100934 507 606 1.22E-21 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.420.40 193 229 4.9E-33 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.420.40 319 361 4.9E-33 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 PANTHER PTHR19375:SF173 2 649 0.0 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:2.60.34.10 390 531 5.6E-69 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.420.40 119 192 2.9E-65 T 23-04-2016 THIMO_RS12140 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.420.40 4 52 2.9E-65 T 23-04-2016 THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 Gene3D G3DSA:1.10.10.10 146 219 3.6E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 Pfam PF13545 Crp-like helix-turn-helix domain 150 216 1.0E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 SMART SM00100 10 129 7.2E-20 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 SMART SM00419 162 210 1.1E-7 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 PANTHER PTHR24567 1 219 1.8E-43 T 23-04-2016 THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 SUPERFAMILY SSF46785 144 214 6.25E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 Gene3D G3DSA:2.60.120.10 5 144 4.9E-31 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 SUPERFAMILY SSF51206 4 143 2.09E-32 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 PANTHER PTHR24567:SF30 1 219 1.8E-43 T 23-04-2016 THIMO_RS16035 c1b63458b30cf16bf6c49842e68e2c20 238 Pfam PF00027 Cyclic nucleotide-binding domain 29 115 1.1E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS09940 e4b9b7f42365a9c84021ab7c9b12383b 363 PANTHER PTHR30040 15 363 7.8E-141 T 23-04-2016 THIMO_RS09940 e4b9b7f42365a9c84021ab7c9b12383b 363 PIRSF PIRSF006268 24 361 5.4E-90 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 THIMO_RS09940 e4b9b7f42365a9c84021ab7c9b12383b 363 PANTHER PTHR30040:SF3 15 363 7.8E-141 T 23-04-2016 THIMO_RS09940 e4b9b7f42365a9c84021ab7c9b12383b 363 SUPERFAMILY SSF143631 50 361 8.63E-98 T 23-04-2016 IPR003374 ApbE-like domain THIMO_RS09940 e4b9b7f42365a9c84021ab7c9b12383b 363 Pfam PF02424 ApbE family 58 340 4.2E-84 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 THIMO_RS18485 57506d8463c1c3ee9708981132ab153a 187 SUPERFAMILY SSF54211 6 128 9.86E-21 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS18485 57506d8463c1c3ee9708981132ab153a 187 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 23 123 5.1E-5 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 THIMO_RS18485 57506d8463c1c3ee9708981132ab153a 187 Gene3D G3DSA:3.30.230.10 14 129 1.9E-17 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS18485 57506d8463c1c3ee9708981132ab153a 187 PANTHER PTHR10046 6 134 7.8E-54 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 THIMO_RS18485 57506d8463c1c3ee9708981132ab153a 187 PANTHER PTHR10046:SF46 6 134 7.8E-54 T 23-04-2016 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 Gene3D G3DSA:3.40.190.80 156 256 6.1E-37 T 23-04-2016 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PANTHER PTHR20854:SF4 1 262 4.5E-104 T 23-04-2016 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 SUPERFAMILY SSF56655 1 260 1.44E-87 T 23-04-2016 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PANTHER PTHR20854 1 262 4.5E-104 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 175 196 6.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 206 230 6.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 6.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 6.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 128 151 6.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 6.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 209 223 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 Pfam PF00459 Inositol monophosphatase family 2 253 1.2E-69 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 Gene3D G3DSA:3.30.540.10 2 155 3.3E-55 T 23-04-2016 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR01959 SuhB family inositol monophosphatase signature 102 121 2.0E-30 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 2.0E-30 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR01959 SuhB family inositol monophosphatase signature 196 208 2.0E-30 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 THIMO_RS05060 fd81eabc521dfdc260675516f0ef2c66 265 PRINTS PR01959 SuhB family inositol monophosphatase signature 154 180 2.0E-30 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 THIMO_RS02725 025b7aee09943f80f743ceeb7971fcbd 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 139 2.0E-22 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS02725 025b7aee09943f80f743ceeb7971fcbd 146 PANTHER PTHR30558 7 146 6.0E-46 T 23-04-2016 THIMO_RS02725 025b7aee09943f80f743ceeb7971fcbd 146 TIGRFAM TIGR02801 tolR: protein TolR 13 139 1.1E-39 T 23-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 THIMO_RS02725 025b7aee09943f80f743ceeb7971fcbd 146 PANTHER PTHR30558:SF7 7 146 6.0E-46 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 PANTHER PTHR33712:SF6 27 456 1.8E-174 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 Gene3D G3DSA:3.40.50.1980 178 294 6.6E-42 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 SUPERFAMILY SSF53807 17 457 6.17E-131 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 55 62 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 PANTHER PTHR33712 27 456 1.8E-174 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 122 136 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 Gene3D G3DSA:3.40.50.1980 321 463 3.9E-47 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 Gene3D G3DSA:3.40.50.1980 37 177 1.3E-41 T 23-04-2016 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 37 442 3.1E-104 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS17325 0614d1804ac0bb6ac648c8f3d5afd571 468 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 3 456 2.6E-210 T 23-04-2016 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0006461|GO:0009399 UniPathway: UPA00782 THIMO_RS06735 00f1644be88aca27c0059758ca99d72d 337 Pfam PF01180 Dihydroorotate dehydrogenase 88 291 1.4E-10 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 THIMO_RS06735 00f1644be88aca27c0059758ca99d72d 337 PANTHER PTHR11938:SF103 102 329 9.1E-54 T 23-04-2016 THIMO_RS06735 00f1644be88aca27c0059758ca99d72d 337 PIRSF PIRSF000164 1 308 1.0E-39 T 23-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 THIMO_RS06735 00f1644be88aca27c0059758ca99d72d 337 SUPERFAMILY SSF51395 1 306 6.41E-57 T 23-04-2016 THIMO_RS06735 00f1644be88aca27c0059758ca99d72d 337 Gene3D G3DSA:3.20.20.70 4 296 7.0E-55 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS06735 00f1644be88aca27c0059758ca99d72d 337 PANTHER PTHR11938 102 329 9.1E-54 T 23-04-2016 THIMO_RS13000 8f635faa1d4105ecabc64b7d6264e136 100 SUPERFAMILY SSF81301 14 99 1.46E-15 T 23-04-2016 THIMO_RS13000 8f635faa1d4105ecabc64b7d6264e136 100 PANTHER PTHR33571 8 99 3.6E-24 T 23-04-2016 THIMO_RS13000 8f635faa1d4105ecabc64b7d6264e136 100 Pfam PF01909 Nucleotidyltransferase domain 21 96 1.3E-7 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS13000 8f635faa1d4105ecabc64b7d6264e136 100 PANTHER PTHR33571:SF1 8 99 3.6E-24 T 23-04-2016 THIMO_RS13000 8f635faa1d4105ecabc64b7d6264e136 100 Gene3D G3DSA:3.30.460.10 10 99 6.7E-20 T 23-04-2016 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 Gene3D G3DSA:1.10.760.10 112 195 3.4E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 PIRSF PIRSF000005 1 197 6.7E-63 T 23-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 PANTHER PTHR33751 1 195 4.7E-58 T 23-04-2016 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 Gene3D G3DSA:1.10.760.10 11 95 1.4E-27 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 17 91 2.0E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 SUPERFAMILY SSF46626 103 194 3.67E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 Pfam PF00034 Cytochrome c 107 195 7.7E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 SUPERFAMILY SSF46626 6 94 7.21E-23 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02105 6d0d6a1078498dfa34176dd57ba6afd7 197 PANTHER PTHR33751:SF3 1 195 4.7E-58 T 23-04-2016 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 PANTHER PTHR11649:SF3 6 297 2.8E-112 T 23-04-2016 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 Gene3D G3DSA:3.40.50.300 8 190 1.5E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 Gene3D G3DSA:3.30.300.20 191 291 1.4E-37 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 Hamap MF_00367 GTPase Era [era]. 4 295 34.935 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 Pfam PF01926 50S ribosome-binding GTPase 9 123 3.0E-22 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 SUPERFAMILY SSF52540 9 202 9.92E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 SUPERFAMILY SSF54814 180 296 2.88E-39 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 9 29 1.7E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 77 95 1.7E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 PANTHER PTHR11649 6 297 2.8E-112 T 23-04-2016 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 164 4.9E-25 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 TIGRFAM TIGR00436 era: GTP-binding protein Era 7 278 1.1E-83 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 THIMO_RS08755 9c9975f6d02d3d2d316b570a90e9ffb9 298 Pfam PF07650 KH domain 207 283 7.2E-17 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 SUPERFAMILY SSF64005 1 216 5.1E-76 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 166 183 - T 23-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 Gene3D G3DSA:3.40.1180.10 1 226 4.5E-88 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 1 221 35.345 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 1 220 1.0E-81 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 Pfam PF01255 Putative undecaprenyl diphosphate synthase 1 220 3.3E-76 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 THIMO_RS03465 9cc4fdc383a8cae43648e2f8019b86ce 238 PANTHER PTHR10291 1 233 3.2E-108 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 THIMO_RS14590 8df4f14173d99931e2afcd072fce85d8 351 SUPERFAMILY SSF46689 8 109 1.25E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14590 8df4f14173d99931e2afcd072fce85d8 351 SUPERFAMILY SSF53098 135 299 2.28E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS14590 8df4f14173d99931e2afcd072fce85d8 351 Gene3D G3DSA:3.30.420.10 129 289 1.1E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS14590 8df4f14173d99931e2afcd072fce85d8 351 Pfam PF13565 Homeodomain-like domain 29 106 4.5E-13 T 23-04-2016 THIMO_RS14590 8df4f14173d99931e2afcd072fce85d8 351 PANTHER PTHR32552 84 294 2.1E-22 T 23-04-2016 THIMO_RS14590 8df4f14173d99931e2afcd072fce85d8 351 Pfam PF00665 Integrase core domain 133 248 3.4E-17 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS07675 b723d0ce6154b9af4274a6fd8159578a 173 Pfam PF12694 Putative molybdenum carrier 18 158 1.3E-56 T 23-04-2016 IPR024755 Molybdenum cofactor carrier, putative THIMO_RS07675 b723d0ce6154b9af4274a6fd8159578a 173 SUPERFAMILY SSF102405 14 108 7.33E-8 T 23-04-2016 THIMO_RS07675 b723d0ce6154b9af4274a6fd8159578a 173 Gene3D G3DSA:3.40.50.450 16 113 1.3E-5 T 23-04-2016 THIMO_RS13145 d1d9761f33588703dabd1425037c5925 171 Gene3D G3DSA:3.40.50.1000 3 170 7.3E-41 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS13145 d1d9761f33588703dabd1425037c5925 171 PANTHER PTHR21485 4 164 1.8E-47 T 23-04-2016 THIMO_RS13145 d1d9761f33588703dabd1425037c5925 171 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 12 164 5.7E-48 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS13145 d1d9761f33588703dabd1425037c5925 171 PIRSF PIRSF006118 1 171 1.0E-65 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS13145 d1d9761f33588703dabd1425037c5925 171 SUPERFAMILY SSF56784 9 166 1.24E-40 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 Pfam PF00312 Ribosomal protein S15 8 88 1.0E-37 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.424 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 PANTHER PTHR23321 1 89 1.2E-45 T 23-04-2016 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 Gene3D G3DSA:1.10.287.10 3 89 1.7E-39 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 3.0E-29 T 23-04-2016 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 SMART SM01387 8 88 4.2E-52 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 SUPERFAMILY SSF47060 3 89 6.47E-36 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 THIMO_RS03380 119da1b0226007e8b623267334aeb51e 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 5.6E-39 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Gene3D G3DSA:3.90.20.20 52 150 1.1E-22 T 23-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Gene3D G3DSA:2.30.22.10 151 209 1.8E-26 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 186 205 3.3E-21 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 159 174 3.3E-21 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 76 92 3.3E-21 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 104 119 3.3E-21 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 SUPERFAMILY SSF58014 55 151 3.27E-21 T 23-04-2016 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 SUPERFAMILY SSF51064 152 208 3.79E-19 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PANTHER PTHR21237 52 210 1.6E-55 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Pfam PF01025 GrpE 49 207 7.3E-47 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 ProSitePatterns PS01071 grpE protein signature. 162 205 - T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS12145 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Hamap MF_01151 Protein GrpE [grpE]. 3 207 19.176 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 SUPERFAMILY SSF160950 14 262 1.29E-74 T 23-04-2016 THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 PANTHER PTHR39455 10 263 1.3E-65 T 23-04-2016 THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 Gene3D G3DSA:1.10.3900.10 22 182 1.2E-53 T 23-04-2016 THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 Gene3D G3DSA:2.60.440.10 183 262 1.0E-25 T 23-04-2016 IPR027462 Z ring-associated protein D, C-terminal domain THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 PANTHER PTHR39455:SF1 10 263 1.3E-65 T 23-04-2016 THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 Pfam PF07072 Protein of unknown function (DUF1342) 28 238 1.3E-72 T 23-04-2016 IPR009777 Cell division protein ZapD THIMO_RS17120 b19e7b7267f59f9f857e05d0ff670b7f 264 Hamap MF_01092 Cell division protein ZapD [zapD]. 13 262 30.892 T 23-04-2016 IPR009777 Cell division protein ZapD THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 250 7.1E-95 T 23-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 224 3.0E-27 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 PIRSF PIRSF036525 1 255 4.6E-98 T 23-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 Gene3D G3DSA:3.40.1010.10 1 143 3.3E-30 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 PANTHER PTHR10882 3 33 5.5E-25 T 23-04-2016 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 PANTHER PTHR10882 58 234 5.5E-25 T 23-04-2016 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 SUPERFAMILY SSF53790 2 249 1.7E-33 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 Gene3D G3DSA:3.30.950.10 144 252 5.0E-44 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 PANTHER PTHR10882:SF1 3 33 5.5E-25 T 23-04-2016 THIMO_RS02375 243ec0b57489598c43e6cda19e07ce2a 255 PANTHER PTHR10882:SF1 58 234 5.5E-25 T 23-04-2016 THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 SUPERFAMILY SSF159127 1 75 1.22E-21 T 23-04-2016 THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 74 2.2E-20 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 Pfam PF01455 HupF/HypC family 1 66 6.7E-21 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 1.4E-10 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 40 56 1.4E-10 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.4E-10 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 23-04-2016 IPR019812 Hydrogenase assembly chaperone, conserved site THIMO_RS08140 15c48f1b19760e5c20c3387e886a166b 77 PANTHER PTHR35177 2 76 2.5E-14 T 23-04-2016 THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SMART SM00267 220 393 2.2E-39 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SMART SM00091 109 175 1.3E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SUPERFAMILY SSF55073 237 395 4.39E-41 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Gene3D G3DSA:3.30.70.270 233 395 6.7E-45 T 23-04-2016 THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 392 2.9E-31 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Gene3D G3DSA:3.20.20.450 409 658 3.3E-69 T 23-04-2016 IPR001633 EAL domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 PANTHER PTHR33121:SF10 411 655 1.1E-51 T 23-04-2016 THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Pfam PF00989 PAS fold 112 160 6.7E-5 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SUPERFAMILY SSF55785 110 217 1.45E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Pfam PF00563 EAL domain 412 652 2.3E-56 T 23-04-2016 IPR001633 EAL domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SUPERFAMILY SSF141868 412 659 2.62E-65 T 23-04-2016 IPR001633 EAL domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 111 225 1.2E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Pfam PF00990 Diguanylate cyclase, GGDEF domain 234 389 1.7E-31 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 PANTHER PTHR33121 411 655 1.1E-51 T 23-04-2016 THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SMART SM00052 405 657 1.2E-65 T 23-04-2016 IPR001633 EAL domain THIMO_RS09610 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Gene3D G3DSA:3.30.450.20 111 217 3.0E-12 T 23-04-2016 THIMO_RS09255 662044acc694b3520c1cda9201f2c752 236 Pfam PF07238 PilZ domain 2 92 3.7E-8 T 23-04-2016 IPR009875 PilZ domain GO:0035438 THIMO_RS09255 662044acc694b3520c1cda9201f2c752 236 Gene3D G3DSA:2.40.10.220 15 94 5.7E-6 T 23-04-2016 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 SUPERFAMILY SSF55200 91 176 9.29E-32 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 Gene3D G3DSA:3.30.110.10 86 177 8.6E-39 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 SUPERFAMILY SSF54364 12 85 1.44E-28 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 ProSitePatterns PS00938 Initiation factor 3 signature. 65 78 - T 23-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 14 177 6.5E-66 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 175 8.7E-36 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 14 83 1.6E-29 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 8 177 30.169 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 Gene3D G3DSA:3.10.20.80 11 85 6.1E-34 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 THIMO_RS13470 4fa1d4e0ca8bf698dedd479588c4488d 177 PANTHER PTHR10938 10 177 1.1E-67 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 THIMO_RS02265 bed2c0e3e49d7e087edb923f49c629e8 229 Gene3D G3DSA:3.40.50.150 12 229 6.0E-80 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02265 bed2c0e3e49d7e087edb923f49c629e8 229 PANTHER PTHR10509 12 229 1.2E-98 T 23-04-2016 THIMO_RS02265 bed2c0e3e49d7e087edb923f49c629e8 229 PANTHER PTHR10509:SF14 12 229 1.2E-98 T 23-04-2016 THIMO_RS02265 bed2c0e3e49d7e087edb923f49c629e8 229 Pfam PF01596 O-methyltransferase 31 228 1.9E-66 T 23-04-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 THIMO_RS02265 bed2c0e3e49d7e087edb923f49c629e8 229 SUPERFAMILY SSF53335 17 229 1.39E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS07700 9a2a73777f1436eacfa1d51b8ace5fd3 281 PIRSF PIRSF018455 7 281 1.1E-87 T 23-04-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 THIMO_RS07700 9a2a73777f1436eacfa1d51b8ace5fd3 281 SUPERFAMILY SSF55166 29 280 4.24E-82 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS07700 9a2a73777f1436eacfa1d51b8ace5fd3 281 Pfam PF03411 Penicillin-insensitive murein endopeptidase 44 279 7.7E-92 T 23-04-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 THIMO_RS07700 9a2a73777f1436eacfa1d51b8ace5fd3 281 Gene3D G3DSA:3.30.1380.10 30 280 1.1E-88 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS17115 6d50609bfbac22d509643ef8fe13a4fe 70 PANTHER PTHR36150:SF1 3 63 9.0E-18 T 23-04-2016 THIMO_RS17115 6d50609bfbac22d509643ef8fe13a4fe 70 SUPERFAMILY SSF57716 5 62 1.13E-18 T 23-04-2016 THIMO_RS17115 6d50609bfbac22d509643ef8fe13a4fe 70 PANTHER PTHR36150 3 63 9.0E-18 T 23-04-2016 THIMO_RS17115 6d50609bfbac22d509643ef8fe13a4fe 70 Pfam PF03884 Domain of unknown function (DUF329) 8 53 1.1E-20 T 23-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 THIMO_RS17115 6d50609bfbac22d509643ef8fe13a4fe 70 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 66 17.644 T 23-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 THIMO_RS17115 6d50609bfbac22d509643ef8fe13a4fe 70 Gene3D G3DSA:3.30.50.10 2 61 3.8E-22 T 23-04-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 THIMO_RS16155 4247e223587ca7ea704b2f213cc9325c 522 Pfam PF01384 Phosphate transporter family 64 509 1.7E-112 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 THIMO_RS16155 4247e223587ca7ea704b2f213cc9325c 522 PANTHER PTHR11101 36 412 6.8E-112 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 THIMO_RS16155 4247e223587ca7ea704b2f213cc9325c 522 PANTHER PTHR11101 481 517 6.8E-112 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 THIMO_RS08875 0c41bf1d666b12f9afa2fa7d7d3211bb 116 Gene3D G3DSA:1.10.260.40 2 75 3.4E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS08875 0c41bf1d666b12f9afa2fa7d7d3211bb 116 SMART SM00530 10 67 6.7E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS08875 0c41bf1d666b12f9afa2fa7d7d3211bb 116 SUPERFAMILY SSF47413 2 73 9.57E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS08875 0c41bf1d666b12f9afa2fa7d7d3211bb 116 Pfam PF01381 Helix-turn-helix 11 67 1.5E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 2.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 2.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 2.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 429 2.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 SUPERFAMILY SSF103190 38 181 2.28E-12 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Pfam PF17203 Single cache domain 3 99 177 3.9E-7 T 23-04-2016 IPR033463 Single cache domain 3 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 SUPERFAMILY SSF55874 315 487 5.37E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 374 486 5.2E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 SMART SM00387 370 489 2.8E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 SMART SM00304 208 259 1.1E-4 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 324 6.4E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 SMART SM00388 259 325 3.6E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Gene3D G3DSA:3.30.565.10 330 487 6.2E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Gene3D G3DSA:1.10.287.130 257 321 6.1E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Pfam PF00672 HAMP domain 192 255 2.5E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 PANTHER PTHR24423 93 175 5.5E-76 T 23-04-2016 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 PANTHER PTHR24423 239 487 5.5E-76 T 23-04-2016 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 Gene3D G3DSA:3.30.450.20 66 177 2.7E-7 T 23-04-2016 THIMO_RS09880 b5b36b756b692bbb1937c782003d4303 490 SUPERFAMILY SSF47384 244 325 1.33E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS00945 2479254d64a0ec474e118161956f8f64 360 Gene3D G3DSA:3.75.10.10 11 348 8.9E-127 T 23-04-2016 THIMO_RS00945 2479254d64a0ec474e118161956f8f64 360 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 11 346 5.8E-115 T 23-04-2016 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 THIMO_RS00945 2479254d64a0ec474e118161956f8f64 360 SUPERFAMILY SSF55909 11 347 1.78E-117 T 23-04-2016 THIMO_RS00945 2479254d64a0ec474e118161956f8f64 360 PANTHER PTHR31377 2 354 2.3E-125 T 23-04-2016 THIMO_RS00945 2479254d64a0ec474e118161956f8f64 360 PANTHER PTHR31377:SF0 2 354 2.3E-125 T 23-04-2016 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 PANTHER PTHR21091:SF18 1 213 5.0E-76 T 23-04-2016 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 PIRSF PIRSF005917 1 281 4.3E-96 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 85 96 - T 23-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 Gene3D G3DSA:3.30.950.10 115 229 3.2E-35 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 Gene3D G3DSA:3.40.1010.10 7 114 1.2E-11 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 208 4.1E-26 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 8 278 4.2E-78 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 SUPERFAMILY SSF53790 6 226 3.27E-77 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 PANTHER PTHR21091 1 213 5.0E-76 T 23-04-2016 THIMO_RS07020 300f26124c2fe66272ddb9e13f7c4a2e 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 7 228 36.002 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 14 441 65.202 T 23-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 PANTHER PTHR11061:SF30 7 444 5.0E-114 T 23-04-2016 THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 Gene3D G3DSA:2.40.50.140 9 83 7.2E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 365 440 5.4E-7 T 23-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 266 341 1.8E-9 T 23-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 PANTHER PTHR11061 7 444 5.0E-114 T 23-04-2016 THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 SUPERFAMILY SSF50249 7 63 1.37E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 371 401 - T 23-04-2016 IPR030390 RNA methyltransferase TrmA, active site THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 423 433 - T 23-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 Gene3D G3DSA:3.40.50.150 261 440 3.9E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS07715 57d8de045d1bad57344d33ce73d1646d 444 SUPERFAMILY SSF53335 71 440 3.49E-79 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04560 ea34d793503c58f19b07793c0d0eb1e0 286 PANTHER PTHR11941:SF76 43 281 3.2E-25 T 23-04-2016 THIMO_RS04560 ea34d793503c58f19b07793c0d0eb1e0 286 SUPERFAMILY SSF52096 37 261 3.77E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS04560 ea34d793503c58f19b07793c0d0eb1e0 286 PANTHER PTHR11941 43 281 3.2E-25 T 23-04-2016 THIMO_RS04560 ea34d793503c58f19b07793c0d0eb1e0 286 Gene3D G3DSA:3.90.226.10 36 222 1.3E-33 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS04560 ea34d793503c58f19b07793c0d0eb1e0 286 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 126 146 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 THIMO_RS04560 ea34d793503c58f19b07793c0d0eb1e0 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 37 209 1.6E-19 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 THIMO_RS01680 f48abeb2d6324dc365ebb5dae47b45ee 265 PANTHER PTHR12905 1 216 2.5E-22 T 23-04-2016 THIMO_RS01680 f48abeb2d6324dc365ebb5dae47b45ee 265 Gene3D G3DSA:3.60.21.10 1 228 3.0E-36 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS01680 f48abeb2d6324dc365ebb5dae47b45ee 265 Pfam PF00149 Calcineurin-like phosphoesterase 2 195 1.3E-15 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 THIMO_RS01680 f48abeb2d6324dc365ebb5dae47b45ee 265 SUPERFAMILY SSF56300 2 246 2.49E-44 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS01680 f48abeb2d6324dc365ebb5dae47b45ee 265 PANTHER PTHR12905:SF17 1 216 2.5E-22 T 23-04-2016 THIMO_RS13135 4c0df1c22571890562ae3b988736a07d 276 Gene3D G3DSA:3.40.50.300 9 244 1.2E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13135 4c0df1c22571890562ae3b988736a07d 276 Pfam PF00005 ABC transporter 31 178 4.5E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS13135 4c0df1c22571890562ae3b988736a07d 276 SUPERFAMILY SSF52540 13 244 2.85E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13135 4c0df1c22571890562ae3b988736a07d 276 PANTHER PTHR24220:SF368 16 264 1.8E-146 T 23-04-2016 THIMO_RS13135 4c0df1c22571890562ae3b988736a07d 276 SMART SM00382 39 234 1.4E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13135 4c0df1c22571890562ae3b988736a07d 276 PANTHER PTHR24220 16 264 1.8E-146 T 23-04-2016 THIMO_RS11530 fd4077b035ba53e46fb21e770aace66e 199 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 28 143 4.9E-19 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS11530 fd4077b035ba53e46fb21e770aace66e 199 PANTHER PTHR10884 27 157 2.8E-23 T 23-04-2016 THIMO_RS11530 fd4077b035ba53e46fb21e770aace66e 199 PANTHER PTHR10884:SF6 27 157 2.8E-23 T 23-04-2016 THIMO_RS11530 fd4077b035ba53e46fb21e770aace66e 199 SUPERFAMILY SSF143243 5 150 6.28E-29 T 23-04-2016 THIMO_RS11530 fd4077b035ba53e46fb21e770aace66e 199 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 79 146 1.0E-9 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 Gene3D G3DSA:3.30.565.10 238 388 4.0E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 14 112 1.4E-5 T 23-04-2016 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 388 9.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 369 9.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 333 9.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 347 9.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 SMART SM00388 164 232 6.4E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 Gene3D G3DSA:1.10.287.130 161 227 5.6E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 PANTHER PTHR24423 124 140 1.1E-48 T 23-04-2016 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 PANTHER PTHR24423 160 387 1.1E-48 T 23-04-2016 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 SMART SM00387 274 391 5.6E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 SUPERFAMILY SSF47384 160 231 1.1E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 Pfam PF00512 His Kinase A (phospho-acceptor) domain 166 231 5.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 387 6.1E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06650 8f2a2db7a032fccef9610a291b659523 419 SUPERFAMILY SSF55874 236 387 5.24E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 SMART SM00344 3 113 3.3E-44 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 PANTHER PTHR30154:SF19 1 153 5.7E-77 T 23-04-2016 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 5.4E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 5.4E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 5.4E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 SUPERFAMILY SSF54909 64 153 1.27E-20 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 SUPERFAMILY SSF46785 2 93 5.4E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 3.1E-23 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 Gene3D G3DSA:3.30.70.920 56 141 2.2E-29 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 PANTHER PTHR30154 1 153 5.7E-77 T 23-04-2016 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 2.2E-21 T 23-04-2016 THIMO_RS03395 626e69ac7f1b2511a53e124fbba8739d 154 Gene3D G3DSA:1.10.10.10 4 55 5.0E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS10805 0a8d83ff7ac377186d4a1d92258ef919 450 SUPERFAMILY SSF50969 115 282 7.85E-14 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS10805 0a8d83ff7ac377186d4a1d92258ef919 450 SUPERFAMILY SSF50969 350 424 7.85E-14 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS10805 0a8d83ff7ac377186d4a1d92258ef919 450 Gene3D G3DSA:2.130.10.10 115 305 6.9E-13 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS10805 0a8d83ff7ac377186d4a1d92258ef919 450 Gene3D G3DSA:2.130.10.10 341 429 6.9E-13 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.2E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 SUPERFAMILY SSF46785 7 86 4.99E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 Gene3D G3DSA:3.40.190.10 184 271 2.1E-26 T 23-04-2016 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 SUPERFAMILY SSF53850 98 303 3.44E-44 T 23-04-2016 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 Pfam PF03466 LysR substrate binding domain 97 299 2.1E-51 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 PANTHER PTHR30126:SF5 8 315 1.5E-120 T 23-04-2016 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 PANTHER PTHR30126 8 315 1.5E-120 T 23-04-2016 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 Gene3D G3DSA:3.40.190.10 98 183 2.4E-14 T 23-04-2016 THIMO_RS14070 6d755702fb3bc61dffacc27511042691 322 Gene3D G3DSA:1.10.10.10 10 94 1.8E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 SUPERFAMILY SSF52317 284 477 1.53E-34 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 PANTHER PTHR21343 1 516 3.1E-172 T 23-04-2016 THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 283 469 4.6E-54 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 Gene3D G3DSA:3.40.50.880 283 474 5.7E-27 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 22 511 2.3E-112 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 PANTHER PTHR21343:SF1 1 516 3.1E-172 T 23-04-2016 THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 Gene3D G3DSA:3.40.50.300 21 258 2.0E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 22 234 2.0E-20 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 SUPERFAMILY SSF52540 21 257 5.72E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02240 e591427ba7505cce8c3aa32037cc15f1 517 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 517 179.044 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS01610 f21e84c3228be4f7cc201956a8c97c9a 532 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 57 219 5.9E-23 T 23-04-2016 THIMO_RS01610 f21e84c3228be4f7cc201956a8c97c9a 532 PANTHER PTHR33908 18 231 3.4E-29 T 23-04-2016 THIMO_RS01610 f21e84c3228be4f7cc201956a8c97c9a 532 PANTHER PTHR33908:SF1 18 231 3.4E-29 T 23-04-2016 THIMO_RS04435 b8f57940c7568fc2a22c7045c762f17d 208 PANTHER PTHR34229 3 198 2.5E-43 T 23-04-2016 THIMO_RS04435 b8f57940c7568fc2a22c7045c762f17d 208 PANTHER PTHR34229:SF1 3 198 2.5E-43 T 23-04-2016 THIMO_RS04435 b8f57940c7568fc2a22c7045c762f17d 208 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 3 197 6.0E-49 T 23-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 THIMO_RS12480 7889fc63817d26645ffde5ff0436b2d8 153 PIRSF PIRSF000027 10 153 2.6E-31 T 23-04-2016 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 THIMO_RS12480 7889fc63817d26645ffde5ff0436b2d8 153 PRINTS PR00608 Class II cytochrome C signature 117 140 3.9E-9 T 23-04-2016 IPR015984 Cytochrome c prime, subgroup THIMO_RS12480 7889fc63817d26645ffde5ff0436b2d8 153 PRINTS PR00608 Class II cytochrome C signature 140 151 3.9E-9 T 23-04-2016 IPR015984 Cytochrome c prime, subgroup THIMO_RS12480 7889fc63817d26645ffde5ff0436b2d8 153 SUPERFAMILY SSF47175 25 152 2.94E-36 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 THIMO_RS12480 7889fc63817d26645ffde5ff0436b2d8 153 Gene3D G3DSA:1.20.120.10 26 153 3.9E-40 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 THIMO_RS12480 7889fc63817d26645ffde5ff0436b2d8 153 Pfam PF01322 Cytochrome C' 30 151 2.2E-33 T 23-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 THIMO_RS09265 d71d75e4826c0b9d9456ed3e41033577 148 Pfam PF17200 Single Cache domain 2 23 146 2.7E-17 T 23-04-2016 IPR033480 Single Cache domain 2 THIMO_RS09265 d71d75e4826c0b9d9456ed3e41033577 148 Gene3D G3DSA:3.30.450.20 26 147 3.8E-27 T 23-04-2016 THIMO_RS09265 d71d75e4826c0b9d9456ed3e41033577 148 SMART SM01049 27 100 3.1E-11 T 23-04-2016 IPR033480 Single Cache domain 2 THIMO_RS15640 1f9d8e63a7cc0c281c99e470a72b24c9 216 SUPERFAMILY SSF81342 5 205 7.14E-29 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS15640 1f9d8e63a7cc0c281c99e470a72b24c9 216 Pfam PF01292 Prokaryotic cytochrome b561 9 193 9.1E-21 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS15640 1f9d8e63a7cc0c281c99e470a72b24c9 216 Gene3D G3DSA:1.20.950.20 3 201 2.7E-25 T 23-04-2016 THIMO_RS15640 1f9d8e63a7cc0c281c99e470a72b24c9 216 PANTHER PTHR30485 4 208 2.5E-21 T 23-04-2016 THIMO_RS15640 1f9d8e63a7cc0c281c99e470a72b24c9 216 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 157 179 2.3E-5 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS15640 1f9d8e63a7cc0c281c99e470a72b24c9 216 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 11 34 2.3E-5 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS12305 fc1f339832e367e67c2728c823f894fa 80 PIRSF PIRSF003113 1 79 5.2E-18 T 23-04-2016 IPR002634 BolA protein THIMO_RS12305 fc1f339832e367e67c2728c823f894fa 80 SUPERFAMILY SSF82657 1 78 5.1E-22 T 23-04-2016 IPR002634 BolA protein THIMO_RS12305 fc1f339832e367e67c2728c823f894fa 80 Gene3D G3DSA:3.30.300.90 1 78 2.3E-22 T 23-04-2016 IPR002634 BolA protein THIMO_RS12305 fc1f339832e367e67c2728c823f894fa 80 Pfam PF01722 BolA-like protein 22 74 7.2E-12 T 23-04-2016 IPR002634 BolA protein THIMO_RS16110 91a3e86874f4b6bcfd7378a5afa1f0aa 498 Pfam PF02530 Porin subfamily 151 317 6.4E-6 T 23-04-2016 IPR003684 Porin, alpha proteobacteria type GO:0006810|GO:0015288|GO:0016020 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 Gene3D G3DSA:3.20.20.10 36 266 2.1E-82 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 280 4.3E-72 T 23-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PANTHER PTHR11482 1 415 7.2E-175 T 23-04-2016 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 1.3E-25 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 369 382 1.3E-25 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 1.3E-25 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 1.3E-25 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 1.3E-25 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 23-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 411 2.8E-159 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 SUPERFAMILY SSF50621 253 411 1.09E-51 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 241 - T 23-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PANTHER PTHR11482:SF5 1 415 7.2E-175 T 23-04-2016 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 Gene3D G3DSA:2.40.37.10 267 412 1.3E-45 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 SUPERFAMILY SSF51419 26 282 2.04E-81 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 412 41.748 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 379 401 2.7E-31 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 2.7E-31 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 2.7E-31 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 2.7E-31 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS16365 85cab8f7988605b48649762d025169d7 415 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 285 389 1.6E-17 T 23-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 PANTHER PTHR11732:SF112 1 139 3.5E-174 T 23-04-2016 THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 PANTHER PTHR11732:SF112 157 346 3.5E-174 T 23-04-2016 THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 Gene3D G3DSA:3.20.20.100 1 343 2.0E-106 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 Pfam PF00248 Aldo/keto reductase family 16 329 3.1E-71 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 PANTHER PTHR11732 1 139 3.5E-174 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 PANTHER PTHR11732 157 346 3.5E-174 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta THIMO_RS17355 c509fa142d69a359866c83968b7e3caf 346 SUPERFAMILY SSF51430 1 344 5.11E-108 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain THIMO_RS03350 f5c9ceb3ac2648c2d0619b413472a47d 179 Pfam PF10263 SprT-like family 18 164 1.0E-24 T 23-04-2016 IPR006640 SprT-like THIMO_RS03350 f5c9ceb3ac2648c2d0619b413472a47d 179 SMART SM00731 14 167 4.2E-26 T 23-04-2016 IPR006640 SprT-like THIMO_RS03350 f5c9ceb3ac2648c2d0619b413472a47d 179 PANTHER PTHR38773 1 173 4.0E-49 T 23-04-2016 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 SUPERFAMILY SSF46785 4 111 5.46E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 Gene3D G3DSA:3.40.190.10 176 265 3.6E-27 T 23-04-2016 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 Gene3D G3DSA:1.10.10.10 4 86 4.6E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.7E-22 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 PANTHER PTHR30126:SF11 1 292 4.2E-100 T 23-04-2016 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 PANTHER PTHR30126 1 292 4.2E-100 T 23-04-2016 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 Pfam PF03466 LysR substrate binding domain 87 295 7.9E-52 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 SUPERFAMILY SSF53850 86 298 1.52E-49 T 23-04-2016 THIMO_RS12595 be13a44a0d910be59ddef96b4ea962c3 300 Gene3D G3DSA:3.40.190.10 90 175 2.2E-21 T 23-04-2016 THIMO_RS14115 dbfaf5dbc555c2918a67502546cc0ee8 158 Gene3D G3DSA:3.40.30.10 2 154 4.9E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS14115 dbfaf5dbc555c2918a67502546cc0ee8 158 SUPERFAMILY SSF52833 3 154 7.97E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS14115 dbfaf5dbc555c2918a67502546cc0ee8 158 PANTHER PTHR10681 3 154 3.2E-40 T 23-04-2016 THIMO_RS14115 dbfaf5dbc555c2918a67502546cc0ee8 158 PIRSF PIRSF000239 1 158 8.2E-23 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 THIMO_RS14115 dbfaf5dbc555c2918a67502546cc0ee8 158 Pfam PF00578 AhpC/TSA family 5 131 2.2E-31 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 389 38.593 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PIRSF PIRSF000724 1 393 1.8E-134 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 23-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 SUPERFAMILY SSF53748 3 388 6.12E-143 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 Pfam PF00162 Phosphoglycerate kinase 7 379 3.3E-140 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 Gene3D G3DSA:3.40.50.1260 5 175 1.4E-64 T 23-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 309 334 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 187 206 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 133 155 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 105 120 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 342 353 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 365 382 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 164 186 5.8E-78 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 PANTHER PTHR11406 1 392 7.3E-189 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS10420 e3f597b3fa9d30eef428e06ab10ef3a4 393 Gene3D G3DSA:3.40.50.1270 176 377 5.5E-82 T 23-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 THIMO_RS13850 2db0b9b30f2c7611cfebb8b986663389 216 Gene3D G3DSA:3.40.630.30 8 164 6.2E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS13850 2db0b9b30f2c7611cfebb8b986663389 216 SUPERFAMILY SSF55729 4 166 7.97E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11225 af8815d8ee6bc534a3defe4557fd6bfe 250 PANTHER PTHR15362 10 147 7.1E-35 T 23-04-2016 THIMO_RS11225 af8815d8ee6bc534a3defe4557fd6bfe 250 Pfam PF01066 CDP-alcohol phosphatidyltransferase 17 80 7.5E-14 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 THIMO_RS11225 af8815d8ee6bc534a3defe4557fd6bfe 250 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 24 186 8.1E-34 T 23-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 THIMO_RS11225 af8815d8ee6bc534a3defe4557fd6bfe 250 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 58 80 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 SUPERFAMILY SSF55681 4 318 1.93E-102 T 23-04-2016 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 Gene3D G3DSA:3.30.930.10 219 320 4.7E-95 T 23-04-2016 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 Gene3D G3DSA:3.30.930.10 3 183 4.7E-95 T 23-04-2016 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 Gene3D G3DSA:3.40.50.800 324 417 1.4E-29 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 Pfam PF13393 Histidyl-tRNA synthetase 10 310 3.0E-50 T 23-04-2016 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 Pfam PF03129 Anticodon binding domain 327 418 1.5E-9 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 405 1.2E-152 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 PANTHER PTHR11476:SF9 1 424 4.9E-215 T 23-04-2016 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 418 32.817 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 PIRSF PIRSF001549 1 420 8.3E-116 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 SUPERFAMILY SSF52954 325 418 3.11E-21 T 23-04-2016 IPR004154 Anticodon-binding THIMO_RS09040 520f3ad5188978b104fafdd50affb954 424 PANTHER PTHR11476 1 424 4.9E-215 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 THIMO_RS09890 fa91a236abbd7cf6e92be04f54230752 82 Pfam PF14375 Cysteine-rich CWC 17 63 4.4E-11 T 23-04-2016 IPR032720 Cysteine-rich CWC THIMO_RS01885 6cafb52d132df02d5bb6a2e53c187550 98 PIRSF PIRSF029218 2 98 8.6E-29 T 23-04-2016 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 THIMO_RS01885 6cafb52d132df02d5bb6a2e53c187550 98 PANTHER PTHR33755:SF3 1 98 1.3E-17 T 23-04-2016 THIMO_RS01885 6cafb52d132df02d5bb6a2e53c187550 98 PANTHER PTHR33755 1 98 1.3E-17 T 23-04-2016 THIMO_RS01885 6cafb52d132df02d5bb6a2e53c187550 98 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 93 1.3E-18 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 12 230 3.9E-82 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 236 37.277 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 PANTHER PTHR10108:SF910 1 230 9.0E-122 T 23-04-2016 THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 Pfam PF13489 Methyltransferase domain 49 201 1.8E-22 T 23-04-2016 THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 SUPERFAMILY SSF53335 6 215 6.1E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 Gene3D G3DSA:3.40.50.150 23 220 1.0E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS10925 2e6e9cfa1e7713c06de0971f3fcd1b31 239 PANTHER PTHR10108 1 230 9.0E-122 T 23-04-2016 THIMO_RS04385 de18826ac6cff9036d46d494693598ee 305 PANTHER PTHR11048:SF32 26 298 5.8E-73 T 23-04-2016 THIMO_RS04385 de18826ac6cff9036d46d494693598ee 305 PANTHER PTHR11048 26 298 5.8E-73 T 23-04-2016 THIMO_RS04385 de18826ac6cff9036d46d494693598ee 305 TIGRFAM TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase 22 298 1.0E-108 T 23-04-2016 IPR006372 Bacteriochlorophyll/chlorophyll synthetase THIMO_RS04385 de18826ac6cff9036d46d494693598ee 305 Pfam PF01040 UbiA prenyltransferase family 36 275 2.3E-39 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 Gene3D G3DSA:3.40.1740.10 131 177 8.1E-34 T 23-04-2016 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 Gene3D G3DSA:3.40.1740.10 5 44 8.1E-34 T 23-04-2016 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 Pfam PF02622 Uncharacterized ACR, COG1678 16 174 1.7E-50 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 Gene3D G3DSA:3.30.70.1300 45 130 9.6E-29 T 23-04-2016 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 PANTHER PTHR30327:SF1 1 187 6.1E-62 T 23-04-2016 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 PANTHER PTHR30327 1 187 6.1E-62 T 23-04-2016 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 SUPERFAMILY SSF143456 6 187 1.24E-65 T 23-04-2016 THIMO_RS12225 279bae1e183f0c4697f22ddf92665aba 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 5 187 38.812 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Gene3D G3DSA:3.40.50.980 9 136 5.5E-13 T 23-04-2016 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 PANTHER PTHR24096 7 452 1.9E-55 T 23-04-2016 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Pfam PF00501 AMP-binding enzyme 119 364 3.1E-36 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Pfam PF00501 AMP-binding enzyme 9 93 3.0E-5 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Gene3D G3DSA:2.30.38.10 303 358 1.3E-9 T 23-04-2016 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 PANTHER PTHR24096:SF179 7 452 1.9E-55 T 23-04-2016 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Gene3D G3DSA:3.30.300.30 359 456 5.3E-17 T 23-04-2016 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Pfam PF13193 AMP-binding enzyme C-terminal domain 374 444 1.6E-9 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 Gene3D G3DSA:3.40.50.980 137 276 3.4E-26 T 23-04-2016 THIMO_RS04205 6c98c1070d1868aa953f6370be554a96 458 SUPERFAMILY SSF56801 7 455 7.06E-88 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 PANTHER PTHR12589 111 242 3.1E-29 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 SUPERFAMILY SSF55620 121 236 1.45E-30 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 SUPERFAMILY SSF55620 11 96 3.45E-9 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 Gene3D G3DSA:3.30.479.10 12 115 2.3E-7 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 Gene3D G3DSA:3.30.479.10 237 353 2.3E-19 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 Gene3D G3DSA:3.30.479.10 120 236 4.9E-28 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 SUPERFAMILY SSF55620 238 353 5.17E-20 T 23-04-2016 THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 123 236 3.5E-25 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 241 352 3.6E-16 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein THIMO_RS14130 7c64a093286d50ac8d6d01a69939cf9b 364 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 12 96 1.1E-4 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein THIMO_RS04995 bcf6a109906c11fba75b9806b30ee76b 277 Pfam PF01936 NYN domain 6 161 4.7E-29 T 23-04-2016 IPR021139 NYN domain, limkain-b1-type THIMO_RS04995 bcf6a109906c11fba75b9806b30ee76b 277 Gene3D G3DSA:3.40.50.1010 6 160 1.2E-31 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS04995 bcf6a109906c11fba75b9806b30ee76b 277 PANTHER PTHR35458 6 159 5.0E-21 T 23-04-2016 THIMO_RS04995 bcf6a109906c11fba75b9806b30ee76b 277 Gene3D G3DSA:2.40.50.140 187 272 2.0E-4 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 Hamap MF_00020 Acetate kinase [ackA]. 1 399 177.576 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PANTHER PTHR21060 1 394 1.3E-190 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 Gene3D G3DSA:3.30.420.40 208 396 6.8E-78 T 23-04-2016 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PIRSF PIRSF000722 1 399 2.6E-147 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 TIGRFAM TIGR00016 ackA: acetate kinase 1 395 8.6E-146 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PANTHER PTHR21060:SF11 1 394 1.3E-190 T 23-04-2016 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 Pfam PF00871 Acetokinase family 2 392 1.9E-145 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 Gene3D G3DSA:3.30.420.40 91 207 4.7E-9 T 23-04-2016 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 206 227 4.4E-46 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 302 315 4.4E-46 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 324 340 4.4E-46 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 379 391 4.4E-46 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 3 14 4.4E-46 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 176 189 4.4E-46 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 SUPERFAMILY SSF53067 160 396 5.74E-89 T 23-04-2016 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 THIMO_RS09250 2189f608ba30712b30ee53004fb20d64 399 SUPERFAMILY SSF53067 1 199 2.4E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PANTHER PTHR13370:SF7 235 382 4.1E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PANTHER PTHR13370:SF7 441 546 4.1E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PANTHER PTHR13370:SF7 141 201 4.1E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 Gene3D G3DSA:3.40.50.150 441 542 3.4E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 Gene3D G3DSA:3.40.50.150 159 350 3.4E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PANTHER PTHR13370 235 382 4.1E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PANTHER PTHR13370 441 546 4.1E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PANTHER PTHR13370 141 201 4.1E-64 T 23-04-2016 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 SUPERFAMILY SSF53335 444 528 2.09E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 SUPERFAMILY SSF53335 165 213 2.09E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 SUPERFAMILY SSF53335 242 362 2.09E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 254 273 2.7E-15 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 192 204 2.7E-15 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 486 500 2.7E-15 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 463 485 2.7E-15 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 THIMO_RS18520 4810a50f6ace901563ee60a1d223e594 1251 Pfam PF01555 DNA methylase 192 516 1.3E-28 T 23-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 Gene3D G3DSA:3.40.50.150 34 185 1.0E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 Gene3D G3DSA:3.40.50.150 220 251 1.0E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 SUPERFAMILY SSF53335 31 263 1.69E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 PIRSF PIRSF000385 24 265 1.4E-31 T 23-04-2016 IPR014369 Glycine/Sarcosine N-methyltransferase GO:0017174 THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 Pfam PF13649 Methyltransferase domain 64 161 2.9E-14 T 23-04-2016 THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 PANTHER PTHR16458 32 266 3.8E-35 T 23-04-2016 IPR014369 Glycine/Sarcosine N-methyltransferase GO:0017174 THIMO_RS08585 5e333415f4c04ff3ff6f3cc5bfab9488 272 PANTHER PTHR16458:SF2 32 266 3.8E-35 T 23-04-2016 THIMO_RS09765 f3cb47bf4e45a03736e09e6e1f861b35 66 SUPERFAMILY SSF54285 2 65 2.04E-17 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp THIMO_RS09765 f3cb47bf4e45a03736e09e6e1f861b35 66 Gene3D G3DSA:3.10.20.30 1 66 1.4E-25 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS09765 f3cb47bf4e45a03736e09e6e1f861b35 66 Pfam PF02597 ThiS family 7 66 3.6E-14 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 THIMO_RS09765 f3cb47bf4e45a03736e09e6e1f861b35 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.7E-22 T 23-04-2016 IPR010035 ThiS, thiamine-biosynthesis THIMO_RS09765 f3cb47bf4e45a03736e09e6e1f861b35 66 PANTHER PTHR34472:SF1 1 66 2.0E-23 T 23-04-2016 THIMO_RS09765 f3cb47bf4e45a03736e09e6e1f861b35 66 PANTHER PTHR34472 1 66 2.0E-23 T 23-04-2016 THIMO_RS15880 b66a6fb409ac289e21ecf59481266d30 123 Pfam PF07798 Protein of unknown function (DUF1640) 60 123 1.6E-5 T 23-04-2016 IPR024461 Coiled-coil domain-containing protein 90-like THIMO_RS09780 677ebc2c4ae887c853fe83d8c2c73483 206 SUPERFAMILY SSF52540 13 203 6.71E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09780 677ebc2c4ae887c853fe83d8c2c73483 206 Pfam PF00005 ABC transporter 14 152 4.5E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS09780 677ebc2c4ae887c853fe83d8c2c73483 206 SMART SM00382 23 201 1.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09780 677ebc2c4ae887c853fe83d8c2c73483 206 PANTHER PTHR24220 14 205 1.8E-39 T 23-04-2016 THIMO_RS09780 677ebc2c4ae887c853fe83d8c2c73483 206 Gene3D G3DSA:3.40.50.300 12 204 1.7E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14625 fe1f2a6d02088d53b78a67faf4a02252 281 Gene3D G3DSA:3.40.50.300 99 274 4.0E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14625 fe1f2a6d02088d53b78a67faf4a02252 281 SUPERFAMILY SSF52540 99 274 1.52E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14625 fe1f2a6d02088d53b78a67faf4a02252 281 Pfam PF13614 AAA domain 99 261 5.4E-10 T 23-04-2016 IPR025669 AAA domain THIMO_RS14625 fe1f2a6d02088d53b78a67faf4a02252 281 PANTHER PTHR32309 85 281 9.2E-28 T 23-04-2016 THIMO_RS14625 fe1f2a6d02088d53b78a67faf4a02252 281 PANTHER PTHR32309:SF13 85 281 9.2E-28 T 23-04-2016 THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 PANTHER PTHR13696:SF37 1 293 2.4E-62 T 23-04-2016 THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 Gene3D G3DSA:3.40.50.300 107 284 7.4E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 Gene3D G3DSA:3.40.50.300 1 52 7.4E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 255 4.5E-25 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 Gene3D G3DSA:3.30.70.20 63 106 8.9E-14 T 23-04-2016 THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 Pfam PF14697 4Fe-4S dicluster domain 61 115 1.0E-8 T 23-04-2016 THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 PANTHER PTHR13696 1 293 2.4E-62 T 23-04-2016 THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 SUPERFAMILY SSF52540 79 108 2.06E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 SUPERFAMILY SSF52540 145 285 2.06E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 SUPERFAMILY SSF52540 1 48 2.06E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04035 73f50b5cf660f1a224e6e519890cbea0 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 PANTHER PTHR11918 37 336 2.8E-41 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 SUPERFAMILY SSF52242 35 120 2.47E-5 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 PANTHER PTHR11918:SF64 37 336 2.8E-41 T 23-04-2016 THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 Gene3D G3DSA:3.80.30.20 171 357 1.1E-29 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 SUPERFAMILY SSF102114 165 363 1.01E-31 T 23-04-2016 THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 Pfam PF02310 B12 binding domain 18 112 4.1E-13 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 Pfam PF04055 Radical SAM superfamily 173 336 3.7E-20 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS02485 6f542b901848af66782b8ff6d89f8ca0 711 SMART SM00729 167 393 2.9E-23 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS08175 6f4591dc9a6f0b6ed0ec0715804bfa61 291 Pfam PF00483 Nucleotidyl transferase 11 270 2.8E-27 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS08175 6f4591dc9a6f0b6ed0ec0715804bfa61 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 266 1.3E-114 T 23-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 THIMO_RS08175 6f4591dc9a6f0b6ed0ec0715804bfa61 291 PANTHER PTHR22572:SF14 6 288 6.5E-100 T 23-04-2016 THIMO_RS08175 6f4591dc9a6f0b6ed0ec0715804bfa61 291 PANTHER PTHR22572 6 288 6.5E-100 T 23-04-2016 THIMO_RS08175 6f4591dc9a6f0b6ed0ec0715804bfa61 291 Gene3D G3DSA:3.90.550.10 5 277 7.4E-68 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS08175 6f4591dc9a6f0b6ed0ec0715804bfa61 291 SUPERFAMILY SSF53448 3 270 4.06E-64 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS15645 169c5bf6da0df0b4531c337c049cf560 552 PIRSF PIRSF039014 15 543 3.2E-152 T 23-04-2016 IPR024673 Octaheme c-type cytochrome THIMO_RS15645 169c5bf6da0df0b4531c337c049cf560 552 TIGRFAM TIGR04315 octaheme_Shew: octaheme c-type cytochrome, tetrathionate reductase family 51 507 3.5E-178 T 23-04-2016 IPR024673 Octaheme c-type cytochrome THIMO_RS15645 169c5bf6da0df0b4531c337c049cf560 552 Pfam PF11783 Cytochrome c bacterial 321 496 4.6E-58 T 23-04-2016 IPR024673 Octaheme c-type cytochrome THIMO_RS15645 169c5bf6da0df0b4531c337c049cf560 552 Gene3D G3DSA:1.10.710.10 70 311 4.8E-24 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 THIMO_RS15645 169c5bf6da0df0b4531c337c049cf560 552 Gene3D G3DSA:1.10.710.10 487 495 4.8E-24 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 THIMO_RS15645 169c5bf6da0df0b4531c337c049cf560 552 SUPERFAMILY SSF48695 61 507 6.44E-88 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 Gene3D G3DSA:3.10.450.50 25 69 4.5E-27 T 23-04-2016 IPR032710 NTF2-like domain THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 Gene3D G3DSA:3.10.450.50 113 167 4.5E-27 T 23-04-2016 IPR032710 NTF2-like domain THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 PIRSF PIRSF004649 1 201 1.4E-58 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 Gene3D G3DSA:1.10.10.640 70 110 5.1E-27 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 Gene3D G3DSA:1.10.10.640 168 198 5.1E-27 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 PANTHER PTHR36573 1 197 1.9E-46 T 23-04-2016 THIMO_RS13120 6169fa798c259236106f98757ec2f5b3 201 Pfam PF05494 MlaC protein 32 192 3.3E-57 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 SUPERFAMILY SSF54631 61 185 1.06E-31 T 23-04-2016 THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 Gene3D G3DSA:3.10.580.10 61 184 3.2E-29 T 23-04-2016 THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 PANTHER PTHR11911 49 184 1.8E-26 T 23-04-2016 THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 SMART SM00116 134 183 1.2E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 SMART SM00116 70 118 8.8E-9 T 23-04-2016 IPR000644 CBS domain THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 Pfam PF00571 CBS domain 129 183 2.0E-11 T 23-04-2016 IPR000644 CBS domain THIMO_RS10990 09343a5b6e92f962ce57c2c1dc2752c3 191 Pfam PF00571 CBS domain 63 113 1.3E-11 T 23-04-2016 IPR000644 CBS domain THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 PIRSF PIRSF016821 8 134 8.9E-43 T 23-04-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 PANTHER PTHR11079:SF70 4 106 3.1E-15 T 23-04-2016 THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 PANTHER PTHR11079 4 106 3.1E-15 T 23-04-2016 THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 Pfam PF01479 S4 domain 12 56 4.9E-13 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 Gene3D G3DSA:3.10.290.10 9 101 1.1E-31 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 SMART SM00363 11 72 3.8E-10 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS07920 19a174d06d4d87103fa174eb2350be78 134 SUPERFAMILY SSF55174 10 99 3.0E-27 T 23-04-2016 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 242 572 22.611 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 32 217 1.1E-28 T 23-04-2016 IPR013343 CRISPR-associated protein Cas4 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 243 569 1.1E-76 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 PANTHER PTHR34353:SF2 222 575 9.5E-123 T 23-04-2016 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 Pfam PF01930 Domain of unknown function DUF83 32 217 6.2E-24 T 23-04-2016 IPR022765 Dna2/Cas4, domain of unknown function DUF83 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 Pfam PF01867 CRISPR associated protein Cas1 243 529 8.4E-94 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 THIMO_RS06100 47e77f538e29e7cdee652c8d76ef46db 575 PANTHER PTHR34353 222 575 9.5E-123 T 23-04-2016 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PANTHER PTHR30332:SF0 98 712 9.3E-99 T 23-04-2016 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 113 712 3.5E-149 T 23-04-2016 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 Pfam PF00263 Bacterial type II and III secretion system protein 537 702 3.3E-51 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PANTHER PTHR30332 98 712 9.3E-99 T 23-04-2016 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 568 578 4.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 667 685 4.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 464 474 4.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 690 704 4.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 533 557 4.9E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR01032 Gene IV protein signature 558 581 1.3E-5 T 23-04-2016 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR01032 Gene IV protein signature 630 658 1.3E-5 T 23-04-2016 THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 Pfam PF03958 Bacterial type II/III secretion system short domain 278 346 1.6E-9 T 23-04-2016 IPR005644 NolW-like THIMO_RS00245 037c133152641ab9f4df16b172c4fd1f 734 Pfam PF03958 Bacterial type II/III secretion system short domain 355 463 1.3E-12 T 23-04-2016 IPR005644 NolW-like THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.720 161 448 1.5E-82 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF01515 Phosphate acetyl/butaryl transferase 429 749 3.0E-86 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 PIRSF PIRSF036684 1 753 0.0 T 23-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 SUPERFAMILY SSF53223 10 161 1.44E-51 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.10750 568 724 4.6E-52 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 SMART SM01274 18 151 6.1E-77 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 SUPERFAMILY SSF53659 429 751 4.52E-85 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF00390 Malic enzyme, N-terminal domain 115 150 6.4E-4 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF00390 Malic enzyme, N-terminal domain 19 114 3.0E-22 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.10380 8 160 6.2E-52 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 1.9E-16 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 PANTHER PTHR23406 372 443 4.0E-151 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 PANTHER PTHR23406 32 355 4.0E-151 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 PANTHER PTHR23406:SF28 372 443 4.0E-151 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 PANTHER PTHR23406:SF28 32 355 4.0E-151 T 23-04-2016 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 SMART SM00919 163 400 1.5E-125 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 THIMO_RS15510 447eef3fef2fd93a9fb84890001292bc 753 SUPERFAMILY SSF51735 163 452 1.5E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF13375 RnfC Barrel sandwich hybrid domain 5 106 3.3E-30 T 23-04-2016 IPR026902 RnfC Barrel sandwich hybrid domain THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 503 161.443 T 23-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 Gene3D G3DSA:1.10.1060.10 358 442 1.4E-16 T 23-04-2016 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 3 437 3.9E-175 T 23-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 SUPERFAMILY SSF142019 86 296 4.05E-57 T 23-04-2016 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 PANTHER PTHR11780:SF1 7 480 2.2E-174 T 23-04-2016 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF10531 SLBB domain 289 337 1.3E-14 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF13237 4Fe-4S dicluster domain 365 419 6.8E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 SUPERFAMILY SSF46548 329 440 9.68E-22 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 PANTHER PTHR11780 7 480 2.2E-174 T 23-04-2016 THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 408 419 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 369 380 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS06070 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 131 276 3.9E-49 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SMART SM00862 146 220 6.1E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 5.8E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Gene3D G3DSA:3.40.50.2300 1 127 2.0E-35 T 23-04-2016 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Gene3D G3DSA:1.10.10.10 128 223 3.7E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Pfam PF00072 Response regulator receiver domain 4 112 9.5E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SUPERFAMILY SSF46894 128 221 5.95E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SMART SM00448 1 112 3.6E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 PANTHER PTHR26402:SF552 1 226 1.3E-78 T 23-04-2016 THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SUPERFAMILY SSF52172 1 121 1.85E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS01050 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 PANTHER PTHR26402 1 226 1.3E-78 T 23-04-2016 THIMO_RS11720 56ea2325c72937eb1d29757500bdedc0 276 PANTHER PTHR30589:SF0 1 273 1.1E-105 T 23-04-2016 THIMO_RS11720 56ea2325c72937eb1d29757500bdedc0 276 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 273 8.6E-77 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 THIMO_RS11720 56ea2325c72937eb1d29757500bdedc0 276 PANTHER PTHR30589 1 273 1.1E-105 T 23-04-2016 THIMO_RS11720 56ea2325c72937eb1d29757500bdedc0 276 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 273 19.492 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 THIMO_RS11720 56ea2325c72937eb1d29757500bdedc0 276 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 THIMO_RS11720 56ea2325c72937eb1d29757500bdedc0 276 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 267 2.1E-80 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 SUPERFAMILY SSF52080 4 143 9.81E-44 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 1.2E-45 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 Gene3D G3DSA:3.100.10.10 32 143 9.7E-23 T 23-04-2016 THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 23-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 PANTHER PTHR12934 1 143 3.1E-60 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 18.619 T 23-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 THIMO_RS13535 c9e171e6d9b50d406d3c57e61bcdb5c5 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 4.5E-28 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P THIMO_RS07755 b4184adf7c7af5a0ee009fa165b90c78 239 Pfam PF01797 Transposase IS200 like 13 124 4.2E-16 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS07755 b4184adf7c7af5a0ee009fa165b90c78 239 PANTHER PTHR34322 2 239 5.7E-34 T 23-04-2016 THIMO_RS07755 b4184adf7c7af5a0ee009fa165b90c78 239 SUPERFAMILY SSF143422 3 127 2.22E-32 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS07755 b4184adf7c7af5a0ee009fa165b90c78 239 Gene3D G3DSA:3.30.70.1290 13 127 1.2E-12 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS07755 b4184adf7c7af5a0ee009fa165b90c78 239 PANTHER PTHR34322:SF1 2 239 5.7E-34 T 23-04-2016 THIMO_RS07755 b4184adf7c7af5a0ee009fa165b90c78 239 SMART SM01321 9 124 1.7E-40 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 Gene3D G3DSA:3.30.1490.100 244 347 6.9E-25 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 Pfam PF00817 impB/mucB/samB family 8 156 1.1E-41 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 Pfam PF11799 impB/mucB/samB family C-terminal domain 240 349 1.4E-15 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 PANTHER PTHR11076 1 342 2.8E-115 T 23-04-2016 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 SUPERFAMILY SSF56672 3 239 1.33E-71 T 23-04-2016 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 Gene3D G3DSA:3.30.70.270 69 166 1.3E-24 T 23-04-2016 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 SUPERFAMILY SSF100879 241 342 4.91E-25 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 Hamap MF_01113 DNA polymerase IV [dinB]. 2 353 33.239 T 23-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS11295 b8c78efb317bd5052a7bb648510a413c 392 Gene3D G3DSA:1.10.150.20 167 241 1.3E-17 T 23-04-2016 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 37 180 4.5E-64 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 PANTHER PTHR23133 5 201 5.5E-102 T 23-04-2016 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 Gene3D G3DSA:3.30.230.40 96 201 6.5E-32 T 23-04-2016 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 8 201 43.072 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 SUPERFAMILY SSF54211 94 184 1.52E-35 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 67 80 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 162 174 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 PANTHER PTHR23133:SF2 5 201 5.5E-102 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 Gene3D G3DSA:3.30.230.40 7 95 2.6E-37 T 23-04-2016 THIMO_RS08830 fea56b3ac25eede4c694039de0e835c1 201 SUPERFAMILY SSF54211 8 91 4.55E-32 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 SUPERFAMILY SSF48576 15 289 1.73E-75 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 132 147 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 PANTHER PTHR31480 15 302 9.2E-75 T 23-04-2016 THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 PANTHER PTHR31480:SF0 15 302 9.2E-75 T 23-04-2016 THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 162 187 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 Pfam PF00494 Squalene/phytoene synthase 23 272 3.0E-67 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 THIMO_RS14325 47a5a1425a04b474c18a4d3156e4786c 376 Gene3D G3DSA:1.10.600.10 13 298 4.3E-74 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS18530 df0540ef01d28d4b42633a3fd8b48813 245 Pfam PF01048 Phosphorylase superfamily 7 181 4.3E-31 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 THIMO_RS18530 df0540ef01d28d4b42633a3fd8b48813 245 SUPERFAMILY SSF53167 4 191 1.57E-41 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 THIMO_RS18530 df0540ef01d28d4b42633a3fd8b48813 245 PANTHER PTHR21234 7 181 2.3E-23 T 23-04-2016 IPR018017 Nucleoside phosphorylase THIMO_RS18530 df0540ef01d28d4b42633a3fd8b48813 245 Gene3D G3DSA:3.40.50.1580 6 190 7.7E-44 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 THIMO_RS07960 4cfdab83351e623aa8a28f0aa0516e76 146 SUPERFAMILY SSF46689 2 67 2.69E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07960 4cfdab83351e623aa8a28f0aa0516e76 146 Gene3D G3DSA:1.10.10.60 5 61 5.7E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07960 4cfdab83351e623aa8a28f0aa0516e76 146 Gene3D G3DSA:1.10.10.10 62 106 2.8E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS07960 4cfdab83351e623aa8a28f0aa0516e76 146 Pfam PF01527 Transposase 2 55 5.7E-10 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS07960 4cfdab83351e623aa8a28f0aa0516e76 146 Pfam PF01527 Transposase 60 110 5.6E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS02760 3c43c6e3d19d099000a1afe8feb7a588 203 Gene3D G3DSA:3.40.50.150 12 182 3.2E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02760 3c43c6e3d19d099000a1afe8feb7a588 203 SUPERFAMILY SSF53335 14 194 5.47E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02760 3c43c6e3d19d099000a1afe8feb7a588 203 PANTHER PTHR20974:SF0 1 196 1.8E-73 T 23-04-2016 THIMO_RS02760 3c43c6e3d19d099000a1afe8feb7a588 203 PANTHER PTHR20974 1 196 1.8E-73 T 23-04-2016 IPR010342 Protein of unknown function DUF938 THIMO_RS02760 3c43c6e3d19d099000a1afe8feb7a588 203 Pfam PF06080 Protein of unknown function (DUF938) 3 195 5.4E-62 T 23-04-2016 IPR010342 Protein of unknown function DUF938 THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 SUPERFAMILY SSF102405 125 290 2.44E-54 T 23-04-2016 THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 SUPERFAMILY SSF102405 41 88 2.44E-54 T 23-04-2016 THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 121 292 2.8E-32 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 PANTHER PTHR31223:SF1 119 296 3.2E-59 T 23-04-2016 THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 Pfam PF03641 Possible lysine decarboxylase 160 289 2.8E-33 T 23-04-2016 IPR031100 LOG family THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 Gene3D G3DSA:3.40.50.450 126 296 8.5E-67 T 23-04-2016 THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 Gene3D G3DSA:3.40.50.450 54 87 8.5E-67 T 23-04-2016 THIMO_RS05015 e0544e2a55d5009cb4372a63532806f2 298 PANTHER PTHR31223 119 296 3.2E-59 T 23-04-2016 THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 111 2.5E-31 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 112 8.6E-26 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 Gene3D G3DSA:2.20.28.10 69 102 1.5E-4 T 23-04-2016 IPR004039 Rubredoxin-type fold THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 PANTHER PTHR34535 2 115 3.7E-35 T 23-04-2016 THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 Hamap MF_00213 Probable hydrogenase nickel incorporation protein HypA [hypA]. 1 113 21.528 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 PIRSF PIRSF004761 1 115 1.2E-29 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 THIMO_RS12280 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 23-04-2016 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 151 172 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 41 191 2.5E-42 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 118 178 9.0E-20 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 SUPERFAMILY SSF143243 16 213 1.83E-52 T 23-04-2016 THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 16 198 34.171 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 PANTHER PTHR10884 34 75 1.1E-67 T 23-04-2016 THIMO_RS02800 b97bccacaf7f13caaf0189a6e1ec9df5 245 PANTHER PTHR10884 105 208 1.1E-67 T 23-04-2016 THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 Gene3D G3DSA:3.40.640.10 86 340 5.7E-16 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 PIRSF PIRSF006815 1 451 4.7E-157 T 23-04-2016 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 Pfam PF02347 Glycine cleavage system P-protein 3 441 1.3E-111 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 PANTHER PTHR11773 1 450 1.3E-191 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 1 450 45.14 T 23-04-2016 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 SUPERFAMILY SSF53383 1 450 3.76E-111 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS08005 dece8288ea677614cbd81e541ce10c4e 455 PANTHER PTHR11773:SF2 1 450 1.3E-191 T 23-04-2016 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 SUPERFAMILY SSF89000 386 434 2.9E-10 T 23-04-2016 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 Pfam PF00682 HMGL-like 31 309 2.6E-71 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 PANTHER PTHR10277 7 555 9.8E-245 T 23-04-2016 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 Pfam PF08502 LeuA allosteric (dimerisation) domain 419 546 7.1E-23 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 SUPERFAMILY SSF51569 20 328 1.17E-96 T 23-04-2016 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 SMART SM00917 419 547 2.4E-24 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 Gene3D G3DSA:3.20.20.70 10 391 1.1E-137 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 SUPERFAMILY SSF110921 450 546 5.75E-25 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 3 548 50.026 T 23-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 PANTHER PTHR10277:SF28 7 555 9.8E-245 T 23-04-2016 THIMO_RS03400 a9eb642900d37e5045ba71295ee38c39 556 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 7 547 2.1E-215 T 23-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 Pfam PF02779 Transketolase, pyrimidine binding domain 283 446 3.7E-36 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 Gene3D G3DSA:3.40.50.920 460 585 2.5E-26 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 Gene3D G3DSA:3.40.50.970 1 245 2.6E-73 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 ProSitePatterns PS00802 Transketolase signature 2. 391 407 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 SUPERFAMILY SSF52922 464 584 6.02E-23 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 Pfam PF02780 Transketolase, C-terminal domain 463 578 6.0E-24 T 23-04-2016 IPR033248 Transketolase, C-terminal domain THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 PANTHER PTHR11624:SF2 1 585 1.7E-235 T 23-04-2016 THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 SUPERFAMILY SSF52518 1 245 4.72E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 SMART SM00861 284 448 1.0E-46 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 PANTHER PTHR11624 1 585 1.7E-235 T 23-04-2016 IPR033247 Transketolase family THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 Gene3D G3DSA:3.40.50.970 271 459 9.9E-58 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 238 4.5E-38 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS07380 7f156dad4d9e6db63f3eb3bc988733db 587 SUPERFAMILY SSF52518 277 450 1.67E-51 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 SUPERFAMILY SSF52540 469 679 1.34E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 Gene3D G3DSA:3.40.50.300 470 658 3.8E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 SMART SM00490 814 902 6.9E-17 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 Gene3D G3DSA:3.40.50.300 779 912 6.1E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 SUPERFAMILY SSF52540 609 663 1.6E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 SUPERFAMILY SSF52540 775 945 1.6E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 PANTHER PTHR10799 421 910 1.0E-99 T 23-04-2016 THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 Pfam PF00271 Helicase conserved C-terminal domain 786 902 2.0E-11 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 Pfam PF00176 SNF2 family N-terminal domain 496 748 7.0E-43 T 23-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 THIMO_RS08490 d10cdb60276da4d111d1d09c43f8a3b5 966 SMART SM00487 473 676 9.6E-23 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS07570 2c7ba7035a29885fc1265c94e36bab56 506 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 24 183 1.4E-43 T 23-04-2016 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices THIMO_RS07570 2c7ba7035a29885fc1265c94e36bab56 506 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 192 502 4.0E-130 T 23-04-2016 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 Gene3D G3DSA:3.90.1150.10 258 359 1.7E-43 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 359 52.487 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 SUPERFAMILY SSF53383 1 358 1.95E-122 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 PANTHER PTHR21152 1 360 1.9E-190 T 23-04-2016 THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 Pfam PF00266 Aminotransferase class-V 5 348 1.3E-57 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 PIRSF PIRSF000525 1 360 3.8E-157 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 358 7.6E-159 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 PANTHER PTHR21152:SF1 1 360 1.9E-190 T 23-04-2016 THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 206 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site THIMO_RS06225 608113dbf5163f05790f0a23c9cc4e97 360 Gene3D G3DSA:3.40.640.10 17 256 5.6E-110 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 487 9.7E-225 T 23-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 SUPERFAMILY SSF51971 142 406 2.47E-67 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 26 131 4.8E-24 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:1.10.1060.10 3 146 6.6E-42 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 SUPERFAMILY SSF46548 2 154 4.71E-41 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 286 300 3.1E-23 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 210 220 3.1E-23 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 3.1E-23 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 3.1E-23 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 PANTHER PTHR11938 7 481 4.5E-162 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:3.40.50.720 147 233 3.9E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:3.40.50.720 415 486 3.9E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 SUPERFAMILY SSF51971 386 481 6.71E-11 T 23-04-2016 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:3.50.50.60 234 406 8.4E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 469 1.5E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00430 ac14fff36fe462219d9ce52e3e4aa8b2 488 PANTHER PTHR11938:SF75 7 481 4.5E-162 T 23-04-2016 THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 PANTHER PTHR30435:SF18 1 243 2.0E-84 T 23-04-2016 THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 PANTHER PTHR30435 1 243 2.0E-84 T 23-04-2016 THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 SUPERFAMILY SSF117143 77 202 5.23E-19 T 23-04-2016 THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 Pfam PF00460 Flagella basal body rod protein 5 35 8.5E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 221 7.3E-54 T 23-04-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 3.4E-35 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G THIMO_RS16640 5af8b22d6afc09d2e5e30b477bf320c4 244 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 169 240 8.1E-19 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 SUPERFAMILY SSF51905 1 313 6.26E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 Gene3D G3DSA:3.50.50.60 4 110 3.1E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 302 2.1E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PANTHER PTHR22912 1 314 1.8E-161 T 23-04-2016 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 9 313 2.5E-119 T 23-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PANTHER PTHR22912:SF48 1 314 1.8E-161 T 23-04-2016 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 5.9E-79 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 Gene3D G3DSA:3.50.50.60 111 308 1.2E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 23-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.0E-39 T 23-04-2016 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.0E-39 T 23-04-2016 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.0E-39 T 23-04-2016 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.0E-39 T 23-04-2016 THIMO_RS11700 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.0E-39 T 23-04-2016 THIMO_RS08950 da981ed754561d5d755a1ff882dfe6b5 459 SUPERFAMILY SSF48452 201 232 3.25E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS08950 da981ed754561d5d755a1ff882dfe6b5 459 SUPERFAMILY SSF48452 276 396 3.25E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS08950 da981ed754561d5d755a1ff882dfe6b5 459 Gene3D G3DSA:1.25.40.10 199 395 2.9E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 SUPERFAMILY SSF56801 11 295 3.01E-125 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 SUPERFAMILY SSF56801 345 604 3.01E-125 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:3.40.50.980 199 290 8.4E-34 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:3.40.50.980 342 405 8.4E-34 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:2.30.38.10 406 468 1.1E-15 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 23-04-2016 IPR020845 AMP-binding, conserved site THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 Pfam PF00501 AMP-binding enzyme 23 474 6.2E-97 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:3.30.300.30 472 592 1.8E-5 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 PANTHER PTHR24096 9 606 2.1E-171 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 PRINTS PR00154 AMP-binding signature 199 207 8.3E-5 T 23-04-2016 IPR020459 AMP-binding THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 PRINTS PR00154 AMP-binding signature 187 198 8.3E-5 T 23-04-2016 IPR020459 AMP-binding THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 PANTHER PTHR24096:SF193 9 606 2.1E-171 T 23-04-2016 THIMO_RS09760 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:3.40.50.980 15 198 1.5E-35 T 23-04-2016 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 SUPERFAMILY SSF57716 105 142 1.33E-9 T 23-04-2016 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 105 134 2.5E-11 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 22 144 31.094 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 26 134 7.2E-53 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 108 132 - T 23-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 SUPERFAMILY SSF109635 11 103 1.96E-36 T 23-04-2016 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 PANTHER PTHR33823 2 144 2.9E-61 T 23-04-2016 THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 PRINTS PR00618 DksA/TraR zinc finger signature 120 132 5.8E-5 T 23-04-2016 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 PRINTS PR00618 DksA/TraR zinc finger signature 108 119 5.8E-5 T 23-04-2016 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria THIMO_RS10950 822353681d287dda0ae02b22129c8498 144 PANTHER PTHR33823:SF2 2 144 2.9E-61 T 23-04-2016 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 SMART SM00382 162 301 6.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Pfam PF00072 Response regulator receiver domain 6 116 7.9E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 SUPERFAMILY SSF52540 143 380 4.88E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:1.10.10.60 399 450 1.9E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Pfam PF02954 Bacterial regulatory protein, Fis family 407 445 2.4E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:3.40.50.2300 3 129 6.0E-39 T 23-04-2016 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 PANTHER PTHR32071 3 454 7.8E-161 T 23-04-2016 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:3.40.50.300 141 309 1.3E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 SUPERFAMILY SSF52172 2 186 4.13E-47 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:1.10.8.60 310 382 4.7E-20 T 23-04-2016 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 SMART SM00448 4 116 1.5E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 SUPERFAMILY SSF46689 350 449 5.82E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 PANTHER PTHR32071:SF17 3 454 7.8E-161 T 23-04-2016 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 Pfam PF00158 Sigma-54 interaction domain 143 303 3.1E-43 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 353 365 4.9E-6 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 165 180 4.9E-6 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 125 139 4.9E-6 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 THIMO_RS05935 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 220 239 4.9E-6 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 SMART SM00382 198 343 1.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 SMART SM00382 597 748 2.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 334 3.8E-13 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:1.10.8.60 776 856 2.9E-30 T 23-04-2016 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:3.40.50.300 160 342 6.7E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 8.5E-56 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 SUPERFAMILY SSF52540 546 848 2.48E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 846 1.2E-25 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.1E-13 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 4.1E-11 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 SUPERFAMILY SSF81923 4 156 6.47E-41 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 855 0.0 T 23-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:3.40.50.300 552 775 2.2E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:1.10.1780.10 1 147 2.3E-44 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 SUPERFAMILY SSF52540 159 545 1.86E-99 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 SMART SM01086 766 855 9.3E-37 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 PANTHER PTHR11638 1 857 0.0 T 23-04-2016 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 9.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 9.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 9.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 9.4E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 PANTHER PTHR11638:SF18 1 857 0.0 T 23-04-2016 THIMO_RS10785 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:1.10.8.60 343 428 9.3E-37 T 23-04-2016 THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 Pfam PF13086 AAA domain 413 812 8.6E-27 T 23-04-2016 THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 Gene3D G3DSA:3.40.50.300 556 582 4.1E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 Gene3D G3DSA:3.40.50.300 774 886 4.1E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 Gene3D G3DSA:3.40.50.300 391 499 4.1E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 SUPERFAMILY SSF52540 589 646 2.77E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 SUPERFAMILY SSF52540 411 485 2.77E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 SUPERFAMILY SSF52540 743 1097 2.77E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 Gene3D G3DSA:3.40.50.300 350 378 2.4E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 PANTHER PTHR10887 682 981 2.7E-61 T 23-04-2016 THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 PANTHER PTHR10887 408 498 2.7E-61 T 23-04-2016 THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 PANTHER PTHR10887 1007 1075 2.7E-61 T 23-04-2016 THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 PANTHER PTHR10887 8 28 2.7E-61 T 23-04-2016 THIMO_RS04315 ea9f2c97a12f382830c3fa246f1330f1 1103 Pfam PF13087 AAA domain 838 1072 4.0E-33 T 23-04-2016 THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 PANTHER PTHR10849 1 163 1.2E-87 T 23-04-2016 THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 20 141 1.4E-43 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 Gene3D G3DSA:1.10.1060.10 15 134 5.7E-22 T 23-04-2016 THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 PANTHER PTHR10849:SF20 1 163 1.2E-87 T 23-04-2016 THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 SUPERFAMILY SSF54862 37 146 2.34E-24 T 23-04-2016 THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 Pfam PF12838 4Fe-4S dicluster domain 63 116 1.2E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 103 114 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS02830 751f4b08353851295357e8b5a21458ee 163 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 11 150 27.28 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 THIMO_RS05985 9c48895c77d73e22467e6bb542fada83 369 PANTHER PTHR30477:SF8 1 301 9.3E-90 T 23-04-2016 THIMO_RS05985 9c48895c77d73e22467e6bb542fada83 369 Pfam PF00950 ABC 3 transport family 3 267 5.3E-42 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 THIMO_RS05985 9c48895c77d73e22467e6bb542fada83 369 Gene3D G3DSA:1.10.3470.10 31 265 1.5E-5 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS05985 9c48895c77d73e22467e6bb542fada83 369 SUPERFAMILY SSF81345 3 264 5.1E-22 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS05985 9c48895c77d73e22467e6bb542fada83 369 Gene3D G3DSA:1.10.10.10 302 366 5.3E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS05985 9c48895c77d73e22467e6bb542fada83 369 PANTHER PTHR30477 1 301 9.3E-90 T 23-04-2016 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 2.8E-15 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 Pfam PF13977 Bacterial transcriptional repressor 102 197 6.1E-8 T 23-04-2016 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 SUPERFAMILY SSF48498 103 195 3.48E-6 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 Gene3D G3DSA:1.10.357.10 12 195 5.8E-31 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.8E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.8E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 PANTHER PTHR30055 2 198 2.8E-24 T 23-04-2016 THIMO_RS04060 8b85a34d6a823061aab3f4bb0838c593 198 SUPERFAMILY SSF46689 10 79 1.69E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS15285 ba28374167c208876291b6a3a3d618eb 507 Pfam PF01936 NYN domain 2 161 4.4E-21 T 23-04-2016 IPR021139 NYN domain, limkain-b1-type THIMO_RS15285 ba28374167c208876291b6a3a3d618eb 507 Gene3D G3DSA:3.40.50.1010 2 165 5.6E-25 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 1 539 2.8E-127 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 Gene3D G3DSA:3.60.20.10 1 210 1.1E-61 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 SUPERFAMILY SSF52402 207 371 1.36E-62 T 23-04-2016 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 SUPERFAMILY SSF52402 455 603 1.36E-62 T 23-04-2016 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 PIRSF PIRSF001589 1 625 3.6E-121 T 23-04-2016 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 Gene3D G3DSA:3.40.50.620 454 603 5.5E-66 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 Gene3D G3DSA:3.40.50.620 211 370 5.5E-66 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 SUPERFAMILY SSF56235 1 212 1.63E-54 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 Pfam PF13537 Glutamine amidotransferase domain 31 150 3.4E-44 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 Pfam PF00733 Asparagine synthase 229 600 4.0E-70 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 PANTHER PTHR11772 450 616 1.0E-128 T 23-04-2016 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 PANTHER PTHR11772 1 375 1.0E-128 T 23-04-2016 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 PANTHER PTHR11772:SF10 450 616 1.0E-128 T 23-04-2016 THIMO_RS04720 ab656034206394f0b1b1dc5842f37aa5 632 PANTHER PTHR11772:SF10 1 375 1.0E-128 T 23-04-2016 THIMO_RS16330 f683c4bbde92ee6144ee1a8737bc7d6d 422 PANTHER PTHR30061 18 422 4.6E-41 T 23-04-2016 THIMO_RS16330 f683c4bbde92ee6144ee1a8737bc7d6d 422 Pfam PF01547 Bacterial extracellular solute-binding protein 68 334 4.1E-23 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 THIMO_RS16330 f683c4bbde92ee6144ee1a8737bc7d6d 422 Gene3D G3DSA:3.40.190.10 165 354 4.7E-36 T 23-04-2016 THIMO_RS16330 f683c4bbde92ee6144ee1a8737bc7d6d 422 PANTHER PTHR30061:SF14 18 422 4.6E-41 T 23-04-2016 THIMO_RS16330 f683c4bbde92ee6144ee1a8737bc7d6d 422 Gene3D G3DSA:3.40.190.10 68 164 8.2E-14 T 23-04-2016 THIMO_RS16330 f683c4bbde92ee6144ee1a8737bc7d6d 422 SUPERFAMILY SSF53850 47 394 1.6E-55 T 23-04-2016 THIMO_RS08205 9173b173dd5e68d90ee58877b8cbf2ec 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 25 92 4.1E-15 T 23-04-2016 IPR007711 Toxin HigB-1 THIMO_RS08205 9173b173dd5e68d90ee58877b8cbf2ec 92 PANTHER PTHR40266 1 92 2.1E-35 T 23-04-2016 THIMO_RS08205 9173b173dd5e68d90ee58877b8cbf2ec 92 PANTHER PTHR40266:SF2 1 92 2.1E-35 T 23-04-2016 THIMO_RS08205 9173b173dd5e68d90ee58877b8cbf2ec 92 SUPERFAMILY SSF143011 1 92 1.92E-13 T 23-04-2016 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 SUPERFAMILY SSF55271 1 105 5.23E-40 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 SUPERFAMILY SSF48334 257 554 1.14E-84 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Pfam PF05190 MutS family domain IV 417 507 3.2E-28 T 23-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Gene3D G3DSA:3.40.1170.10 1 110 2.6E-48 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Pfam PF01624 MutS domain I 1 109 2.7E-41 T 23-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 SMART SM00533 273 580 2.4E-93 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Gene3D G3DSA:3.40.50.300 558 786 3.0E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Pfam PF05192 MutS domain III 259 548 2.7E-36 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 1 831 24.667 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 PANTHER PTHR11361 1 832 0.0 T 23-04-2016 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 SUPERFAMILY SSF53150 104 256 1.96E-43 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 SUPERFAMILY SSF52540 556 787 3.19E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 1 836 0.0 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Gene3D G3DSA:1.10.1420.10 306 466 3.0E-52 T 23-04-2016 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 SMART SM00534 596 783 1.8E-110 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Gene3D G3DSA:3.30.420.110 116 245 3.6E-42 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 PIRSF PIRSF037677 1 813 2.4E-143 T 23-04-2016 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 PANTHER PTHR11361:SF86 1 832 0.0 T 23-04-2016 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 677 693 - T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Pfam PF05188 MutS domain II 118 243 3.1E-24 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 THIMO_RS10095 bf40aa0d459925da34616241856c7b8c 843 Pfam PF00488 MutS domain V 600 786 6.3E-81 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 PANTHER PTHR23135:SF5 10 461 3.5E-205 T 23-04-2016 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Gene3D G3DSA:3.90.190.20 324 468 1.4E-51 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Pfam PF08245 Mur ligase middle domain 120 301 2.5E-28 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Gene3D G3DSA:3.40.50.720 16 103 8.4E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 15 473 42.846 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 335 410 3.9E-20 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Pfam PF01225 Mur ligase family, catalytic domain 18 116 2.5E-25 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 SUPERFAMILY SSF53623 101 319 3.01E-71 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 SUPERFAMILY SSF51984 16 102 1.05E-26 T 23-04-2016 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 PANTHER PTHR23135 10 461 3.5E-205 T 23-04-2016 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 Gene3D G3DSA:3.40.1190.10 104 323 5.1E-82 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 18 463 3.0E-165 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14775 f0a80cc36ba43d0d3a1620f601723bce 477 SUPERFAMILY SSF53244 320 468 4.58E-45 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 PANTHER PTHR30023 1 409 1.8E-43 T 23-04-2016 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 204 337 1.6E-16 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 49 174 1.1E-22 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 346 396 9.4E-8 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 62 81 8.6E-17 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 319 333 8.6E-17 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 304 318 8.6E-17 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 247 269 8.6E-17 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 SUPERFAMILY SSF56601 50 396 3.71E-54 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 Gene3D G3DSA:3.40.710.10 44 111 2.2E-6 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 PANTHER PTHR30023:SF0 1 409 1.8E-43 T 23-04-2016 THIMO_RS05115 c366f48cae0a5de2a44f6ca58296c2c1 413 Gene3D G3DSA:3.40.710.10 215 399 7.0E-35 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 SUPERFAMILY SSF111369 153 306 1.7E-6 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 Gene3D G3DSA:2.40.50.100 53 86 6.7E-11 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 Gene3D G3DSA:2.40.50.100 191 221 6.7E-11 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 302 5.1E-16 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 SUPERFAMILY SSF111369 42 115 3.53E-6 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 PANTHER PTHR30469:SF15 29 116 1.1E-42 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 PANTHER PTHR30469:SF15 132 370 1.1E-42 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 160 379 5.1E-32 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 PANTHER PTHR30469 29 116 1.1E-42 T 23-04-2016 THIMO_RS10690 2263b2c49a4449cc7f655655bc84139c 390 PANTHER PTHR30469 132 370 1.1E-42 T 23-04-2016 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 Gene3D G3DSA:1.20.58.100 468 584 3.3E-44 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 TIGRFAM TIGR02061 aprA: adenylylsulfate reductase, alpha subunit 12 618 0.0 T 23-04-2016 IPR011803 Adenylylsulphate reductase, alpha subunit KEGG: 00920+1.8.99.2|MetaCyc: PWY-5278|MetaCyc: PWY-5279 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 PANTHER PTHR11632 6 613 1.0E-141 T 23-04-2016 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 Gene3D G3DSA:3.90.700.10 247 375 2.1E-45 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 PANTHER PTHR11632:SF57 6 613 1.0E-141 T 23-04-2016 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF56425 239 382 9.52E-55 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF46977 486 619 2.35E-42 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 Gene3D G3DSA:3.50.50.60 4 246 8.1E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 Gene3D G3DSA:3.50.50.60 377 448 8.1E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF51905 398 477 3.0E-64 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF51905 5 257 3.0E-64 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 PIRSF PIRSF000171 1 623 2.5E-242 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 Pfam PF02910 Fumarate reductase flavoprotein C-term 499 614 4.6E-8 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 THIMO_RS05825 b31974af330304264bdb0b4b3f2f30d9 629 Pfam PF00890 FAD binding domain 12 241 2.4E-18 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain THIMO_RS05085 6765ba8d917f246b04709f6d87b6ff97 125 PANTHER PTHR10584 8 66 3.8E-12 T 23-04-2016 THIMO_RS05085 6765ba8d917f246b04709f6d87b6ff97 125 PANTHER PTHR10584:SF191 8 66 3.8E-12 T 23-04-2016 THIMO_RS05085 6765ba8d917f246b04709f6d87b6ff97 125 Pfam PF04241 Protein of unknown function (DUF423) 19 106 1.5E-25 T 23-04-2016 IPR006696 Protein of unknown function DUF423 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:1.10.8.10 1 54 4.9E-27 T 23-04-2016 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 ProSitePatterns PS01127 Elongation factor Ts signature 2. 76 86 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:1.10.286.20 195 238 5.0E-21 T 23-04-2016 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Pfam PF00889 Elongation factor TS 72 275 4.7E-69 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:3.30.479.20 155 190 2.0E-25 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:3.30.479.20 239 274 2.0E-25 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 PANTHER PTHR11741 1 295 5.2E-134 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Hamap MF_00050 Elongation factor Ts [tsf]. 1 292 78.673 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 SUPERFAMILY SSF46934 1 55 4.38E-19 T 23-04-2016 IPR009060 UBA-like GO:0005515 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 293 4.4E-103 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:3.30.479.20 56 149 5.5E-22 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 SUPERFAMILY SSF54713 154 293 5.36E-51 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 THIMO_RS03450 bebfaba8194098011022a125a07d9382 295 SUPERFAMILY SSF54713 55 148 6.05E-21 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 SMART SM00116 10 59 4.0E-9 T 23-04-2016 IPR000644 CBS domain THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 SMART SM00116 77 124 6.3E-7 T 23-04-2016 IPR000644 CBS domain THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 Pfam PF00571 CBS domain 70 124 8.6E-8 T 23-04-2016 IPR000644 CBS domain THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 Pfam PF00571 CBS domain 3 58 2.1E-11 T 23-04-2016 IPR000644 CBS domain THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 PANTHER PTHR11911 1 124 8.6E-16 T 23-04-2016 THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 PANTHER PTHR11911:SF68 1 124 8.6E-16 T 23-04-2016 THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 Gene3D G3DSA:3.10.580.10 1 123 5.1E-27 T 23-04-2016 THIMO_RS04010 67b289bf95f0774fc74d876882337853 128 SUPERFAMILY SSF54631 1 124 1.39E-26 T 23-04-2016 THIMO_RS17020 13dbeee4a6ffdd3a240d26ca06ac56f5 172 Pfam PF07484 Phage Tail Collar Domain 7 63 1.3E-24 T 23-04-2016 IPR011083 Phage tail collar domain THIMO_RS17020 13dbeee4a6ffdd3a240d26ca06ac56f5 172 SUPERFAMILY SSF88874 1 166 1.7E-45 T 23-04-2016 THIMO_RS17020 13dbeee4a6ffdd3a240d26ca06ac56f5 172 PANTHER PTHR34720 1 172 1.0E-53 T 23-04-2016 THIMO_RS17020 13dbeee4a6ffdd3a240d26ca06ac56f5 172 Gene3D G3DSA:3.90.1340.10 1 68 5.6E-29 T 23-04-2016 IPR011083 Phage tail collar domain THIMO_RS12455 a8649684e6fbfc7eb9f0baa2257cbaf7 480 PIRSF PIRSF004919 18 479 6.0E-140 T 23-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS12455 a8649684e6fbfc7eb9f0baa2257cbaf7 480 PANTHER PTHR30624:SF4 14 480 1.2E-228 T 23-04-2016 THIMO_RS12455 a8649684e6fbfc7eb9f0baa2257cbaf7 480 Pfam PF01523 Putative modulator of DNA gyrase 38 330 3.1E-66 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS12455 a8649684e6fbfc7eb9f0baa2257cbaf7 480 PANTHER PTHR30624 14 480 1.2E-228 T 23-04-2016 THIMO_RS12455 a8649684e6fbfc7eb9f0baa2257cbaf7 480 SUPERFAMILY SSF111283 23 478 1.44E-129 T 23-04-2016 THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 Gene3D G3DSA:1.10.600.10 4 272 1.1E-66 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 200 212 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 PANTHER PTHR12001:SF23 1 253 7.5E-65 T 23-04-2016 THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 Pfam PF00348 Polyprenyl synthetase 26 235 2.4E-44 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 PANTHER PTHR12001 1 253 7.5E-65 T 23-04-2016 IPR017446 Polyprenyl synthetase-related THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 SUPERFAMILY SSF48576 19 273 3.68E-65 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS14310 38ac2f96e4e24dfd4ea9cc18ab54d700 289 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 SUPERFAMILY SSF52943 2 287 1.7E-95 T 23-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 23-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 74 93 4.6E-35 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 4.6E-35 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 4.6E-35 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 167 184 4.6E-35 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 Gene3D G3DSA:1.10.287.80 19 60 2.1E-39 T 23-04-2016 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 Gene3D G3DSA:1.10.287.80 202 235 2.1E-39 T 23-04-2016 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 Gene3D G3DSA:3.40.1380.10 65 192 6.4E-42 T 23-04-2016 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 Gene3D G3DSA:1.10.287.80 236 282 4.5E-31 T 23-04-2016 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 PANTHER PTHR11693 1 287 1.5E-128 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 8.8E-109 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 Pfam PF00231 ATP synthase 5 286 3.6E-93 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05595 8f756d16a4ddafccd708bdb1684a88cd 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.192 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 131 220 8.0E-21 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 PANTHER PTHR22993 1 271 3.5E-112 T 23-04-2016 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 SUPERFAMILY SSF57716 219 270 5.42E-16 T 23-04-2016 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 246 270 - T 23-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 Gene3D G3DSA:1.10.8.50 132 271 1.9E-46 T 23-04-2016 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 SMART SM01232 131 223 3.6E-45 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 7.1E-9 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 PANTHER PTHR22993:SF15 1 271 3.5E-112 T 23-04-2016 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 270 2.0E-83 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 271 42.134 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 Gene3D G3DSA:3.20.190.10 2 131 2.3E-36 T 23-04-2016 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 5.4E-30 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 SUPERFAMILY SSF81624 2 136 2.22E-38 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 SMART SM00898 2 116 4.0E-46 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 THIMO_RS17235 eda19a6e739234571b824c65ee07e129 271 SUPERFAMILY SSF46946 132 224 1.38E-27 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 Pfam PF13609 Gram-negative porin 9 358 4.8E-51 T 23-04-2016 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 Gene3D G3DSA:2.40.160.10 24 183 1.6E-63 T 23-04-2016 IPR023614 Porin domain THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 Gene3D G3DSA:2.40.160.10 219 375 1.6E-63 T 23-04-2016 IPR023614 Porin domain THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 226 238 3.3E-10 T 23-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 333 350 3.3E-10 T 23-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 161 172 3.3E-10 T 23-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 106 116 3.3E-10 T 23-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 58 69 3.3E-10 T 23-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 SUPERFAMILY SSF56935 17 188 2.84E-58 T 23-04-2016 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 SUPERFAMILY SSF56935 224 375 2.84E-58 T 23-04-2016 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00184 Neisseria sp. porin signature 60 85 6.2E-13 T 23-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00184 Neisseria sp. porin signature 160 177 6.2E-13 T 23-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 THIMO_RS05675 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00184 Neisseria sp. porin signature 330 354 6.2E-13 T 23-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 PANTHER PTHR30352:SF5 7 347 4.7E-153 T 23-04-2016 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 SUPERFAMILY SSF102114 53 321 2.16E-40 T 23-04-2016 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 PANTHER PTHR30352 7 347 4.7E-153 T 23-04-2016 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 Pfam PF13353 4Fe-4S single cluster domain 78 174 2.1E-5 T 23-04-2016 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 Gene3D G3DSA:3.80.30.10 129 293 1.6E-34 T 23-04-2016 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 Pfam PF04055 Radical SAM superfamily 87 235 1.5E-17 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 PIRSF PIRSF004869 1 320 4.6E-93 T 23-04-2016 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted THIMO_RS14505 8c6c48e7865509dc6cc89ea493ea30ab 369 TIGRFAM TIGR04337 AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme 12 360 2.0E-196 T 23-04-2016 IPR027596 AmmeMemoRadiSam system radical SAM enzyme THIMO_RS17445 b3380a3aa0427ecb9fe16df297893eba 139 PANTHER PTHR12231 1 139 1.2E-27 T 23-04-2016 THIMO_RS17445 b3380a3aa0427ecb9fe16df297893eba 139 Pfam PF00581 Rhodanese-like domain 40 129 7.9E-18 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS17445 b3380a3aa0427ecb9fe16df297893eba 139 Gene3D G3DSA:3.40.250.10 35 137 5.7E-32 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS17445 b3380a3aa0427ecb9fe16df297893eba 139 SUPERFAMILY SSF52821 11 136 3.8E-35 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS17445 b3380a3aa0427ecb9fe16df297893eba 139 PANTHER PTHR12231:SF138 1 139 1.2E-27 T 23-04-2016 THIMO_RS17445 b3380a3aa0427ecb9fe16df297893eba 139 SMART SM00450 36 133 3.2E-25 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS12490 fd696386aa7dfee715122a3ba1f49d8b 322 PANTHER PTHR37955 2 308 7.4E-42 T 23-04-2016 THIMO_RS12490 fd696386aa7dfee715122a3ba1f49d8b 322 PANTHER PTHR37955:SF1 2 308 7.4E-42 T 23-04-2016 THIMO_RS12490 fd696386aa7dfee715122a3ba1f49d8b 322 Pfam PF03595 Voltage-dependent anion channel 12 308 3.1E-67 T 23-04-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 THIMO_RS10255 ec43858df0d08f3ef8d178ee3ff911d8 102 Pfam PF07883 Cupin domain 45 98 1.6E-12 T 23-04-2016 IPR013096 Cupin 2, conserved barrel THIMO_RS10255 ec43858df0d08f3ef8d178ee3ff911d8 102 SUPERFAMILY SSF51182 6 102 4.46E-18 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS10255 ec43858df0d08f3ef8d178ee3ff911d8 102 Gene3D G3DSA:2.60.120.10 15 101 1.6E-30 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS09300 26129d82847c4aa831b8cba588bdbcf1 346 Gene3D G3DSA:3.40.50.2000 173 343 7.5E-48 T 23-04-2016 THIMO_RS09300 26129d82847c4aa831b8cba588bdbcf1 346 SUPERFAMILY SSF53756 2 343 2.67E-86 T 23-04-2016 THIMO_RS09300 26129d82847c4aa831b8cba588bdbcf1 346 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 80 316 1.8E-42 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 THIMO_RS09300 26129d82847c4aa831b8cba588bdbcf1 346 PANTHER PTHR30160 2 341 2.8E-50 T 23-04-2016 THIMO_RS09300 26129d82847c4aa831b8cba588bdbcf1 346 Gene3D G3DSA:3.40.50.2000 2 156 4.4E-43 T 23-04-2016 THIMO_RS09300 26129d82847c4aa831b8cba588bdbcf1 346 PANTHER PTHR30160:SF7 2 341 2.8E-50 T 23-04-2016 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 SUPERFAMILY SSF56935 28 609 6.11E-128 T 23-04-2016 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 Pfam PF07715 TonB-dependent Receptor Plug Domain 42 147 4.1E-30 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 Pfam PF00593 TonB dependent receptor 391 610 6.5E-36 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 12 610 7.3E-213 T 23-04-2016 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 Gene3D G3DSA:2.40.170.20 153 610 2.6E-96 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 PANTHER PTHR30069:SF10 2 484 2.2E-70 T 23-04-2016 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 Gene3D G3DSA:2.170.130.10 22 152 3.7E-42 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS06915 7e853ef702e2ea589d84d614bdf8f08d 611 PANTHER PTHR30069 2 484 2.2E-70 T 23-04-2016 THIMO_RS09700 ea37494f991e813a25138f671529abe6 303 SUPERFAMILY SSF53098 122 286 1.47E-37 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS09700 ea37494f991e813a25138f671529abe6 303 Pfam PF00665 Integrase core domain 128 244 4.9E-28 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS09700 ea37494f991e813a25138f671529abe6 303 PANTHER PTHR32552 4 293 8.8E-64 T 23-04-2016 THIMO_RS09700 ea37494f991e813a25138f671529abe6 303 Gene3D G3DSA:3.30.420.10 122 284 1.2E-36 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS09700 ea37494f991e813a25138f671529abe6 303 Pfam PF13276 HTH-like domain 47 103 7.0E-15 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 Gene3D G3DSA:3.30.70.270 454 617 9.9E-54 T 23-04-2016 THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 PANTHER PTHR10799:SF750 399 610 1.3E-29 T 23-04-2016 THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 450 611 2.4E-54 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 SUPERFAMILY SSF55073 457 614 1.73E-49 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 Pfam PF00990 Diguanylate cyclase, GGDEF domain 453 609 2.3E-47 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 SMART SM00267 441 613 6.1E-59 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS16185 3bb97b80b9fa02529aeebd6481695a83 625 PANTHER PTHR10799 399 610 1.3E-29 T 23-04-2016 THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 PANTHER PTHR30619:SF2 6 770 1.6E-165 T 23-04-2016 THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 123 741 8.8E-99 T 23-04-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 Gene3D G3DSA:3.60.15.10 517 729 1.5E-31 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 SUPERFAMILY SSF56281 513 751 9.07E-42 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 Pfam PF00753 Metallo-beta-lactamase superfamily 523 707 1.8E-11 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 Pfam PF03772 Competence protein 223 488 4.2E-63 T 23-04-2016 IPR004477 ComEC/Rec2-related protein THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 245 421 1.1E-23 T 23-04-2016 IPR004477 ComEC/Rec2-related protein THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 SMART SM00849 526 712 7.9E-10 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 PANTHER PTHR30619 6 770 1.6E-165 T 23-04-2016 THIMO_RS00925 c67c5466cfd1777b5b6620b5285ea4a1 786 Pfam PF13567 Domain of unknown function (DUF4131) 19 181 8.8E-33 T 23-04-2016 IPR025405 Domain of unknown function DUF4131 THIMO_RS07305 f19c84ae3f5f804af2857a2965caf546 90 SMART SM00360 2 75 1.1E-29 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 THIMO_RS07305 f19c84ae3f5f804af2857a2965caf546 90 SUPERFAMILY SSF54928 2 88 3.63E-33 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 THIMO_RS07305 f19c84ae3f5f804af2857a2965caf546 90 PANTHER PTHR24012 1 83 4.8E-31 T 23-04-2016 THIMO_RS07305 f19c84ae3f5f804af2857a2965caf546 90 Gene3D G3DSA:3.30.70.330 2 88 5.1E-32 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 THIMO_RS07305 f19c84ae3f5f804af2857a2965caf546 90 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 2.3E-24 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 THIMO_RS05730 9e231e8bbc7947ebbb40ecd978169035 687 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 2 685 25.735 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 THIMO_RS05730 9e231e8bbc7947ebbb40ecd978169035 687 PANTHER PTHR31998:SF0 8 685 0.0 T 23-04-2016 THIMO_RS05730 9e231e8bbc7947ebbb40ecd978169035 687 Pfam PF03030 Inorganic H+ pyrophosphatase 15 680 2.1E-266 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 THIMO_RS05730 9e231e8bbc7947ebbb40ecd978169035 687 PIRSF PIRSF001265 3 687 1.7E-261 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 THIMO_RS05730 9e231e8bbc7947ebbb40ecd978169035 687 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 6 685 9.3E-265 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 THIMO_RS05730 9e231e8bbc7947ebbb40ecd978169035 687 PANTHER PTHR31998 8 685 0.0 T 23-04-2016 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 Pfam PF01008 Initiation factor 2 subunit family 54 338 7.6E-74 T 23-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 338 1.0E-106 T 23-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 Gene3D G3DSA:1.20.120.420 14 160 6.9E-49 T 23-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 Gene3D G3DSA:3.40.50.10470 161 343 3.0E-62 T 23-04-2016 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 PANTHER PTHR10233:SF6 14 338 2.6E-149 T 23-04-2016 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 11 350 39.198 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 14 338 2.2E-133 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 PANTHER PTHR10233 14 338 2.6E-149 T 23-04-2016 THIMO_RS06175 deba0551486976f53b2c7b2c28230175 352 SUPERFAMILY SSF100950 11 342 3.68E-110 T 23-04-2016 THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 PANTHER PTHR24220 7 214 1.6E-72 T 23-04-2016 THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 Pfam PF00005 ABC transporter 21 167 1.1E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 PANTHER PTHR24220:SF66 7 214 1.6E-72 T 23-04-2016 THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 SUPERFAMILY SSF52540 4 214 8.88E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 SMART SM00382 30 213 4.9E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS04420 1e981c5facb17edfef9e28474c96413d 255 Gene3D G3DSA:3.40.50.300 2 214 2.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 23-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 PANTHER PTHR11911 1 279 2.1E-242 T 23-04-2016 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 PANTHER PTHR11911 297 485 2.1E-242 T 23-04-2016 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 Pfam PF00571 CBS domain 147 202 6.9E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 Pfam PF00571 CBS domain 94 138 7.4E-11 T 23-04-2016 IPR000644 CBS domain THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 SMART SM00116 95 142 2.9E-12 T 23-04-2016 IPR000644 CBS domain THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 SMART SM00116 156 204 5.8E-8 T 23-04-2016 IPR000644 CBS domain THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 SUPERFAMILY SSF51412 215 477 1.09E-122 T 23-04-2016 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 SUPERFAMILY SSF51412 2 89 1.09E-122 T 23-04-2016 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 473 1.6E-160 T 23-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 PIRSF PIRSF000130 1 488 1.7E-202 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 454 4.8E-193 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 PANTHER PTHR11911:SF6 1 279 2.1E-242 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 PANTHER PTHR11911:SF6 297 485 2.1E-242 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 SUPERFAMILY SSF54631 93 202 2.53E-28 T 23-04-2016 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 SMART SM01240 6 473 0.0 T 23-04-2016 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 486 84.409 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 THIMO_RS17080 f0793156cdbf8d66c69687f3cc50f3d7 488 Gene3D G3DSA:3.20.20.70 4 485 4.1E-198 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 Pfam PF00815 Histidinol dehydrogenase 26 431 1.1E-164 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 36 60 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 174 200 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 324 349 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 204 229 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 365 383 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 1.5E-85 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 Gene3D G3DSA:3.40.50.1980 30 243 8.2E-80 T 23-04-2016 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 23-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PANTHER PTHR21256 11 437 1.4E-195 T 23-04-2016 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 PIRSF PIRSF000099 7 432 2.2E-157 T 23-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 36 430 7.8E-157 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 SUPERFAMILY SSF53720 27 431 1.96E-86 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 THIMO_RS13100 84fdcf1cd28dc1aa76411abc91645589 439 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 431 40.329 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 SMART SM00267 351 522 1.7E-57 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 PANTHER PTHR10799 289 519 4.6E-36 T 23-04-2016 THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 Gene3D G3DSA:3.30.450.20 73 204 3.0E-47 T 23-04-2016 THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 Gene3D G3DSA:3.30.70.270 364 521 3.3E-51 T 23-04-2016 THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 SUPERFAMILY SSF103190 37 204 8.89E-50 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 358 522 1.5E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 PANTHER PTHR10799:SF750 289 519 4.6E-36 T 23-04-2016 THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 517 5.9E-43 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 SUPERFAMILY SSF55073 367 521 8.63E-46 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 Gene3D G3DSA:3.30.450.20 212 317 6.1E-24 T 23-04-2016 THIMO_RS04085 de980a1d9ac5c99961ea6632ad0f7eeb 523 SUPERFAMILY SSF103190 213 315 8.63E-21 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS16385 60c65de973858843d8af7e79750fc57a 275 Gene3D G3DSA:2.60.40.790 180 258 1.3E-4 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS16385 60c65de973858843d8af7e79750fc57a 275 SUPERFAMILY SSF49764 175 254 1.46E-5 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS10070 1756f7dfe30da4a99ccdf5ea9bab81b5 327 Pfam PF00005 ABC transporter 35 179 7.8E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS10070 1756f7dfe30da4a99ccdf5ea9bab81b5 327 SUPERFAMILY SSF52540 17 245 2.72E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10070 1756f7dfe30da4a99ccdf5ea9bab81b5 327 PANTHER PTHR24220 20 316 3.2E-151 T 23-04-2016 THIMO_RS10070 1756f7dfe30da4a99ccdf5ea9bab81b5 327 Gene3D G3DSA:3.40.50.300 15 242 8.4E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10070 1756f7dfe30da4a99ccdf5ea9bab81b5 327 SMART SM00382 44 238 3.3E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10070 1756f7dfe30da4a99ccdf5ea9bab81b5 327 PANTHER PTHR24220:SF305 20 316 3.2E-151 T 23-04-2016 THIMO_RS07205 c94fb42dc5643a2670d6732e77448bdc 104 SMART SM01103 7 90 2.4E-33 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 THIMO_RS07205 c94fb42dc5643a2670d6732e77448bdc 104 SUPERFAMILY SSF75471 6 97 2.88E-26 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 THIMO_RS07205 c94fb42dc5643a2670d6732e77448bdc 104 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 13 95 5.0E-16 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 THIMO_RS07205 c94fb42dc5643a2670d6732e77448bdc 104 PANTHER PTHR31846 6 90 8.3E-18 T 23-04-2016 THIMO_RS07205 c94fb42dc5643a2670d6732e77448bdc 104 Pfam PF01985 CRS1 / YhbY (CRM) domain 8 90 7.5E-20 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 THIMO_RS07205 c94fb42dc5643a2670d6732e77448bdc 104 Gene3D G3DSA:3.30.110.60 6 97 1.4E-27 T 23-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 THIMO_RS00215 016ddf085712abda7111d2b8f12c5d94 139 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 5.7E-4 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00215 016ddf085712abda7111d2b8f12c5d94 139 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00215 016ddf085712abda7111d2b8f12c5d94 139 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 11 34 8.9E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 Gene3D G3DSA:1.25.40.10 274 468 2.2E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 Pfam PF01435 Peptidase family M48 86 264 1.1E-28 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 Pfam PF14559 Tetratricopeptide repeat 363 413 2.7E-7 T 23-04-2016 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 PANTHER PTHR22726:SF10 39 359 2.1E-77 T 23-04-2016 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 6 491 30.534 T 23-04-2016 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 Gene3D G3DSA:3.30.2010.10 80 154 2.6E-16 T 23-04-2016 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 SUPERFAMILY SSF48452 293 464 4.64E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS00525 614cbb74a3dd07ba019b73256770d057 504 PANTHER PTHR22726 39 359 2.1E-77 T 23-04-2016 THIMO_RS01105 dde7524c323632d4ab576551a7c3297b 193 PANTHER PTHR30335 2 193 7.2E-67 T 23-04-2016 THIMO_RS01105 dde7524c323632d4ab576551a7c3297b 193 PIRSF PIRSF006102 2 193 1.1E-43 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS01105 dde7524c323632d4ab576551a7c3297b 193 PANTHER PTHR30335:SF0 2 193 7.2E-67 T 23-04-2016 THIMO_RS01105 dde7524c323632d4ab576551a7c3297b 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 5.9E-47 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS07950 0a3a6830bf4c77fa2dd06097b43e32d8 412 Pfam PF02371 Transposase IS116/IS110/IS902 family 276 360 2.2E-10 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 THIMO_RS07950 0a3a6830bf4c77fa2dd06097b43e32d8 412 PANTHER PTHR33055 11 176 2.2E-20 T 23-04-2016 THIMO_RS07950 0a3a6830bf4c77fa2dd06097b43e32d8 412 PANTHER PTHR33055 223 411 2.2E-20 T 23-04-2016 THIMO_RS07950 0a3a6830bf4c77fa2dd06097b43e32d8 412 PANTHER PTHR33055:SF3 11 176 2.2E-20 T 23-04-2016 THIMO_RS07950 0a3a6830bf4c77fa2dd06097b43e32d8 412 PANTHER PTHR33055:SF3 223 411 2.2E-20 T 23-04-2016 THIMO_RS07950 0a3a6830bf4c77fa2dd06097b43e32d8 412 Pfam PF01548 Transposase 9 175 3.2E-18 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 Gene3D G3DSA:1.20.5.890 1 42 9.5E-13 T 23-04-2016 THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 3.2E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 1.9E-5 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 1.9E-5 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 1.9E-5 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14215 ac220505954e6d2773ea0919a4107f84 64 SUPERFAMILY SSF56918 1 45 4.71E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 PANTHER PTHR35093 7 143 5.5E-49 T 23-04-2016 THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 PANTHER PTHR35093 159 423 5.5E-49 T 23-04-2016 THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 Gene3D G3DSA:2.40.160.60 29 423 2.6E-88 T 23-04-2016 THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 SUPERFAMILY SSF56935 29 423 6.04E-68 T 23-04-2016 THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 25 423 4.0E-61 T 23-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 PANTHER PTHR35093:SF2 7 143 5.5E-49 T 23-04-2016 THIMO_RS12600 274fbefe5aaf3e9b664cd690689c09f2 423 PANTHER PTHR35093:SF2 159 423 5.5E-49 T 23-04-2016 THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 PANTHER PTHR24220 3 251 3.9E-86 T 23-04-2016 THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 SUPERFAMILY SSF52540 2 229 5.44E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 Pfam PF00005 ABC transporter 17 166 3.0E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 Gene3D G3DSA:3.40.50.300 1 233 1.1E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 PANTHER PTHR24220:SF266 3 251 3.9E-86 T 23-04-2016 THIMO_RS13365 9d18afbe31b92f9de77f85edf0a4c5ac 257 SMART SM00382 26 213 9.5E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 Pfam PF00639 PPIC-type PPIASE domain 273 366 2.8E-22 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 Pfam PF13624 SurA N-terminal domain 1 162 1.6E-51 T 23-04-2016 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 SUPERFAMILY SSF109998 41 166 8.24E-29 T 23-04-2016 IPR027304 Trigger factor/SurA domain THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 SUPERFAMILY SSF109998 200 240 8.24E-29 T 23-04-2016 IPR027304 Trigger factor/SurA domain THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 306 327 - T 23-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 SUPERFAMILY SSF54534 263 370 5.36E-26 T 23-04-2016 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 Gene3D G3DSA:3.10.50.40 260 391 1.0E-37 T 23-04-2016 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 PANTHER PTHR10657 1 172 1.7E-85 T 23-04-2016 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 PANTHER PTHR10657 241 526 1.7E-85 T 23-04-2016 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 PANTHER PTHR10657:SF13 1 172 1.7E-85 T 23-04-2016 THIMO_RS02060 18a0e84918c4497eb1e38c1d680d7548 642 PANTHER PTHR10657:SF13 241 526 1.7E-85 T 23-04-2016 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 SUPERFAMILY SSF51905 7 304 7.77E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 SUPERFAMILY SSF51905 385 415 7.77E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 Pfam PF01593 Flavin containing amine oxidoreductase 14 269 1.6E-22 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 PANTHER PTHR10742:SF299 6 415 3.2E-131 T 23-04-2016 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 Gene3D G3DSA:3.50.50.60 204 275 2.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 Gene3D G3DSA:3.50.50.60 135 136 2.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 Gene3D G3DSA:3.50.50.60 6 97 2.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04475 b0c12da1a9e1008d3f558073c7d1f0b9 432 PANTHER PTHR10742 6 415 3.2E-131 T 23-04-2016 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 80 411 8.5E-21 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 SUPERFAMILY SSF51695 75 417 2.22E-57 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 PANTHER PTHR23344:SF7 35 372 1.8E-62 T 23-04-2016 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 PANTHER PTHR23344:SF7 388 423 1.8E-62 T 23-04-2016 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 Gene3D G3DSA:3.20.20.190 75 414 6.8E-52 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 PANTHER PTHR23344 35 372 1.8E-62 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 THIMO_RS16485 15c77a84dffab3737d6c3610a85ed16b 424 PANTHER PTHR23344 388 423 1.8E-62 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 THIMO_RS13675 901efe3cde3284cb58583105993d1807 175 SUPERFAMILY SSF160369 4 170 5.36E-52 T 23-04-2016 THIMO_RS13675 901efe3cde3284cb58583105993d1807 175 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 25.471 T 23-04-2016 IPR022973 Ribosomal protein L10 THIMO_RS13675 901efe3cde3284cb58583105993d1807 175 Pfam PF00466 Ribosomal protein L10 5 101 4.2E-25 T 23-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 THIMO_RS13675 901efe3cde3284cb58583105993d1807 175 PANTHER PTHR11560 2 173 5.8E-53 T 23-04-2016 THIMO_RS13675 901efe3cde3284cb58583105993d1807 175 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 23-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 SUPERFAMILY SSF54523 36 148 2.83E-25 T 23-04-2016 THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 Pfam PF00114 Pilin (bacterial filament) 43 147 7.6E-19 T 23-04-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 35 2.0E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 Pfam PF13633 Prokaryotic N-terminal methylation site 14 38 4.1E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 Gene3D G3DSA:3.30.700.10 15 148 3.4E-40 T 23-04-2016 THIMO_RS18355 7e177dd8bc0bb172c43cbaa589cfa3db 340 PANTHER PTHR30093 14 79 4.8E-14 T 23-04-2016 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 SUPERFAMILY SSF53756 5 379 3.22E-30 T 23-04-2016 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 2 380 40.345 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 Gene3D G3DSA:3.40.50.2000 157 355 9.6E-10 T 23-04-2016 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 PANTHER PTHR30372 1 382 2.2E-116 T 23-04-2016 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 Pfam PF02684 Lipid-A-disaccharide synthetase 5 366 3.1E-106 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 PANTHER PTHR30372:SF0 1 382 2.2E-116 T 23-04-2016 THIMO_RS03510 de04f7533bf0f5d4eb6c053ce2ab87fe 386 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 378 3.1E-112 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 THIMO_RS11710 3b361855e082e25ff1024c429f44612c 246 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 205 2.0E-73 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 THIMO_RS11710 3b361855e082e25ff1024c429f44612c 246 SUPERFAMILY SSF55729 8 228 6.0E-89 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS11710 3b361855e082e25ff1024c429f44612c 246 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 246 94.892 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 THIMO_RS11710 3b361855e082e25ff1024c429f44612c 246 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 33 216 1.6E-66 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 THIMO_RS11710 3b361855e082e25ff1024c429f44612c 246 PANTHER PTHR30098 14 239 1.3E-75 T 23-04-2016 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 Pfam PF04055 Radical SAM superfamily 59 232 1.5E-17 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 PIRSF PIRSF000167 3 457 1.0E-167 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 SUPERFAMILY SSF102114 5 448 1.02E-136 T 23-04-2016 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 461 1.6E-188 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 SMART SM00729 53 276 2.0E-48 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 Pfam PF06969 HemN C-terminal domain 367 435 3.2E-11 T 23-04-2016 IPR010723 HemN, C-terminal THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 PANTHER PTHR13932 1 455 3.3E-225 T 23-04-2016 THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 Gene3D G3DSA:3.80.30.20 55 284 2.3E-30 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS02015 4c1b0938f795136f4726c1a75c9cb6d6 461 PANTHER PTHR13932:SF6 1 455 3.3E-225 T 23-04-2016 THIMO_RS02840 71721a30ace326669eec3c45bcf01e73 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 101 20.261 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 THIMO_RS02840 71721a30ace326669eec3c45bcf01e73 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 96 6.3E-25 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 THIMO_RS02840 71721a30ace326669eec3c45bcf01e73 101 PANTHER PTHR11434 3 101 1.5E-41 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 THIMO_RS04440 bb1abcea47f5206e1a8e6ed5d5814a42 265 Pfam PF10670 Domain of unknown function (DUF4198) 30 236 3.8E-51 T 23-04-2016 IPR019613 Protein of unknown function DUF4198 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.40.50.740 541 674 5.5E-39 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.40.50.740 279 349 5.5E-39 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.40.50.740 382 419 5.5E-39 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF54862 83 217 1.09E-35 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 83 4.7E-18 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF50692 729 782 2.28E-9 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 PANTHER PTHR11615:SF38 6 396 3.7E-155 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 PANTHER PTHR11615:SF38 505 671 3.7E-155 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF01568 Molydopterin dinucleotide binding domain 730 782 9.2E-9 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SMART SM00929 90 130 7.6E-20 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:2.40.40.20 730 787 3.8E-9 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 7 649 2.0E-183 T 23-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF00384 Molybdopterin oxidoreductase 279 650 1.5E-30 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 152 162 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.10.20.30 4 64 1.4E-6 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 90 125 8.0E-17 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 PANTHER PTHR11615 6 396 3.7E-155 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 PANTHER PTHR11615 505 671 3.7E-155 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 34 51 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF53706 220 673 1.93E-79 T 23-04-2016 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 105 117 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 THIMO_RS02820 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF54292 5 81 9.53E-18 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS06620 58c8c63a7aa29e519343d82865db297e 89 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 61 1.2E-7 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS06620 58c8c63a7aa29e519343d82865db297e 89 Gene3D G3DSA:3.40.1620.10 1 49 4.2E-7 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS06620 58c8c63a7aa29e519343d82865db297e 89 SUPERFAMILY SSF143120 1 75 4.19E-12 T 23-04-2016 THIMO_RS17245 c33efe93db6d39d47ee73c7aaf9b9f7a 322 SUPERFAMILY SSF56281 6 248 5.77E-54 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS17245 c33efe93db6d39d47ee73c7aaf9b9f7a 322 SMART SM00849 24 229 2.6E-28 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS17245 c33efe93db6d39d47ee73c7aaf9b9f7a 322 PANTHER PTHR11935:SF28 4 253 4.8E-54 T 23-04-2016 THIMO_RS17245 c33efe93db6d39d47ee73c7aaf9b9f7a 322 Pfam PF00753 Metallo-beta-lactamase superfamily 25 229 8.6E-21 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS17245 c33efe93db6d39d47ee73c7aaf9b9f7a 322 PANTHER PTHR11935 4 253 4.8E-54 T 23-04-2016 THIMO_RS17245 c33efe93db6d39d47ee73c7aaf9b9f7a 322 Gene3D G3DSA:3.60.15.10 6 245 3.4E-41 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 PANTHER PTHR32120 2 333 3.3E-98 T 23-04-2016 THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 71 316 1.1E-42 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 Gene3D G3DSA:1.10.40.50 262 323 1.0E-19 T 23-04-2016 THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 Gene3D G3DSA:3.40.50.300 105 259 4.1E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 SUPERFAMILY SSF52540 105 318 2.7E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 30 323 27.875 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 PANTHER PTHR32120:SF8 2 333 3.3E-98 T 23-04-2016 THIMO_RS00820 d04c067e8cc1fbf0febe8ff372c9c22d 352 Pfam PF03193 Protein of unknown function, DUF258 88 260 2.1E-39 T 23-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 Gene3D G3DSA:4.10.320.10 155 200 4.9E-22 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 PANTHER PTHR23151 156 457 1.6E-192 T 23-04-2016 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 PANTHER PTHR23151 5 139 1.6E-192 T 23-04-2016 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 SUPERFAMILY SSF51230 4 96 4.45E-22 T 23-04-2016 IPR011053 Single hybrid motif THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 Pfam PF00364 Biotin-requiring enzyme 6 76 1.1E-19 T 23-04-2016 IPR000089 Biotin/lipoyl attachment THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 PANTHER PTHR23151:SF68 156 457 1.6E-192 T 23-04-2016 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 PANTHER PTHR23151:SF68 5 139 1.6E-192 T 23-04-2016 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 4 457 1.8E-170 T 23-04-2016 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 230 457 6.9E-75 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 SUPERFAMILY SSF47005 153 198 9.02E-14 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 Pfam PF02817 e3 binding domain 159 194 2.4E-17 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 SUPERFAMILY SSF52777 217 457 3.11E-78 T 23-04-2016 THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 Gene3D G3DSA:3.30.559.10 222 457 1.0E-79 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain THIMO_RS05170 493af31e9085e121e39465d65fea4269 457 Gene3D G3DSA:2.40.50.100 6 81 1.2E-20 T 23-04-2016 THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 Pfam PF13353 4Fe-4S single cluster domain 109 182 8.8E-7 T 23-04-2016 THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 PIRSF PIRSF004911 7 335 1.4E-105 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 Pfam PF04055 Radical SAM superfamily 115 262 2.3E-8 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 SUPERFAMILY SSF102114 102 323 1.57E-23 T 23-04-2016 THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 Gene3D G3DSA:3.20.20.70 104 315 1.5E-14 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 TIGRFAM TIGR00238 TIGR00238: KamA family protein 46 327 1.6E-87 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 14 334 2.5E-132 T 23-04-2016 IPR022462 Lysine-2,3-aminomutase-like THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 PANTHER PTHR30538:SF1 14 332 1.3E-109 T 23-04-2016 THIMO_RS10650 718124001bd4e72a748a3a8f0147cfb2 335 PANTHER PTHR30538 14 332 1.3E-109 T 23-04-2016 THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 Gene3D G3DSA:3.30.420.10 4 178 1.2E-66 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 SMART SM00479 7 180 2.2E-19 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 Pfam PF00929 Exonuclease 9 170 2.5E-29 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 PANTHER PTHR11046 3 181 1.1E-105 T 23-04-2016 THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 41.784 T 23-04-2016 IPR022894 Oligoribonuclease GO:0016788 THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 SUPERFAMILY SSF53098 1 179 2.53E-44 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS08620 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 PANTHER PTHR11046:SF1 3 181 1.1E-105 T 23-04-2016 THIMO_RS13265 7a317ac7dfd2aa0b83c209cbebadf02b 95 SUPERFAMILY SSF141000 5 93 6.28E-25 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 THIMO_RS13265 7a317ac7dfd2aa0b83c209cbebadf02b 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 21 90 7.4E-14 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 THIMO_RS13265 7a317ac7dfd2aa0b83c209cbebadf02b 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 20.557 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 THIMO_RS13265 7a317ac7dfd2aa0b83c209cbebadf02b 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 6 95 7.5E-27 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 THIMO_RS13265 7a317ac7dfd2aa0b83c209cbebadf02b 95 PANTHER PTHR15004 6 95 2.9E-22 T 23-04-2016 THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 PIRSF PIRSF000089 4 339 1.2E-104 T 23-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 Gene3D G3DSA:3.40.50.620 7 206 5.5E-68 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 SUPERFAMILY SSF52467 214 332 3.93E-45 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 SUPERFAMILY SSF52402 8 194 5.93E-51 T 23-04-2016 THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 214 297 1.6E-33 T 23-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 SMART SM00893 8 205 1.1E-45 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 Pfam PF01012 Electron transfer flavoprotein domain 8 179 1.9E-43 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 278 304 - T 23-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 Gene3D G3DSA:3.40.50.1220 208 335 5.0E-52 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 PANTHER PTHR10909 122 332 7.9E-43 T 23-04-2016 THIMO_RS02075 654908edad8edbf8b60b49e7624e7f28 339 PANTHER PTHR10909:SF294 122 332 7.9E-43 T 23-04-2016 THIMO_RS17765 0e810054c174dd93512b1113a98f3d9c 80 PANTHER PTHR30477 1 71 3.2E-17 T 23-04-2016 THIMO_RS17765 0e810054c174dd93512b1113a98f3d9c 80 Gene3D G3DSA:3.40.50.1980 1 43 1.8E-9 T 23-04-2016 THIMO_RS17765 0e810054c174dd93512b1113a98f3d9c 80 Gene3D G3DSA:3.40.50.1980 44 79 5.0E-9 T 23-04-2016 THIMO_RS17765 0e810054c174dd93512b1113a98f3d9c 80 SUPERFAMILY SSF53807 1 80 5.89E-21 T 23-04-2016 THIMO_RS17765 0e810054c174dd93512b1113a98f3d9c 80 PANTHER PTHR30477:SF1 1 71 3.2E-17 T 23-04-2016 THIMO_RS17765 0e810054c174dd93512b1113a98f3d9c 80 Pfam PF01297 Zinc-uptake complex component A periplasmic 2 70 2.0E-17 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 PANTHER PTHR13696:SF1 2 257 6.6E-90 T 23-04-2016 THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 267 1.7E-110 T 23-04-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 Gene3D G3DSA:3.40.50.300 2 244 2.9E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 SUPERFAMILY SSF52540 2 268 2.56E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 PANTHER PTHR13696 2 257 6.6E-90 T 23-04-2016 THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 216 2.1E-28 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS09570 7f6a701312c1a3e8107f4249ba8ed42c 270 PIRSF PIRSF003092 1 270 2.5E-91 T 23-04-2016 IPR025501 ATP binding protein MinD THIMO_RS16650 c4468318eea55e455d6db419faf70490 236 PANTHER PTHR30435 9 235 2.2E-43 T 23-04-2016 THIMO_RS16650 c4468318eea55e455d6db419faf70490 236 Pfam PF03963 Flagellar hook capping protein - N-terminal region 20 88 8.4E-21 T 23-04-2016 IPR005648 Flagellar hook capping protein THIMO_RS16650 c4468318eea55e455d6db419faf70490 236 Pfam PF13861 FlgD Tudor-like domain 97 233 3.3E-9 T 23-04-2016 IPR025963 FlgD Tudor-like domain THIMO_RS16650 c4468318eea55e455d6db419faf70490 236 PANTHER PTHR30435:SF15 9 235 2.2E-43 T 23-04-2016 THIMO_RS16650 c4468318eea55e455d6db419faf70490 236 Pfam PF13860 FlgD Ig-like domain 122 189 9.0E-19 T 23-04-2016 IPR025965 FlgD Ig-like domain THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Pfam PF00364 Biotin-requiring enzyme 542 607 5.8E-15 T 23-04-2016 IPR000089 Biotin/lipoyl attachment THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Gene3D G3DSA:3.20.20.70 2 282 4.6E-116 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 SUPERFAMILY SSF51230 533 607 1.44E-19 T 23-04-2016 IPR011053 Single hybrid motif THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 PANTHER PTHR18866 4 607 6.0E-238 T 23-04-2016 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Pfam PF00682 HMGL-like 3 266 9.6E-48 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 6 604 4.3E-259 T 23-04-2016 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Gene3D G3DSA:2.40.50.100 535 607 4.0E-23 T 23-04-2016 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 SUPERFAMILY SSF51569 2 299 2.75E-89 T 23-04-2016 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 PANTHER PTHR18866:SF109 4 607 6.0E-238 T 23-04-2016 THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Pfam PF02436 Conserved carboxylase domain 291 479 2.8E-57 T 23-04-2016 IPR003379 Carboxylase, conserved domain THIMO_RS09420 efe75cd4c3ff0ab10dbd1cebe442c45f 611 SUPERFAMILY SSF89000 296 448 2.04E-51 T 23-04-2016 THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 32 121 5.7E-24 T 23-04-2016 IPR031982 Type IV minor pilin ComP THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 Gene3D G3DSA:3.30.700.10 11 102 5.0E-17 T 23-04-2016 THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 SUPERFAMILY SSF54523 11 129 4.24E-24 T 23-04-2016 THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 7 30 2.9E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 PANTHER PTHR30093 6 61 1.5E-18 T 23-04-2016 THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 PANTHER PTHR30093:SF4 6 61 1.5E-18 T 23-04-2016 THIMO_RS15035 bb69e111b1cc14e1c924bbeda85292f6 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 2.1E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 SUPERFAMILY SSF51246 306 378 4.16E-18 T 23-04-2016 IPR011054 Rudiment single hybrid motif THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 10 362 40.276 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 SUPERFAMILY SSF52440 9 103 1.73E-28 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 PANTHER PTHR11609 10 365 1.1E-142 T 23-04-2016 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 PANTHER PTHR11609:SF5 10 365 1.1E-142 T 23-04-2016 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 Gene3D G3DSA:3.30.470.20 158 378 3.7E-79 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 367 5.9E-125 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 Pfam PF02222 ATP-grasp domain 116 281 2.7E-46 T 23-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 Gene3D G3DSA:3.40.50.20 9 115 3.7E-36 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 Gene3D G3DSA:3.30.1490.20 123 157 2.7E-11 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS03310 c13e03d33db35cf4cfd187230b8e48d4 384 SUPERFAMILY SSF56059 107 300 3.54E-51 T 23-04-2016 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 Pfam PF00375 Sodium:dicarboxylate symporter family 3 401 1.3E-121 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 SUPERFAMILY SSF118215 3 403 4.05E-112 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 Gene3D G3DSA:1.10.3860.10 2 407 4.7E-121 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 1 20 4.6E-34 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 4.6E-34 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.6E-34 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 82 107 4.6E-34 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 4.6E-34 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 4.6E-34 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PANTHER PTHR11958 1 451 1.3E-143 T 23-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 THIMO_RS00955 225f669fc28a073ad000b63a824299cf 454 PANTHER PTHR11958:SF44 1 451 1.3E-143 T 23-04-2016 THIMO_RS03460 a1ec85b86558cc2229fc38b898634692 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 4.6E-72 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 THIMO_RS03460 a1ec85b86558cc2229fc38b898634692 185 Pfam PF01765 Ribosome recycling factor 20 183 8.8E-63 T 23-04-2016 IPR023584 Ribosome recycling factor domain THIMO_RS03460 a1ec85b86558cc2229fc38b898634692 185 PANTHER PTHR20982 1 185 4.0E-78 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 THIMO_RS03460 a1ec85b86558cc2229fc38b898634692 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.606 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 THIMO_RS03460 a1ec85b86558cc2229fc38b898634692 185 Gene3D G3DSA:1.10.132.20 67 184 3.6E-42 T 23-04-2016 IPR023584 Ribosome recycling factor domain THIMO_RS03460 a1ec85b86558cc2229fc38b898634692 185 SUPERFAMILY SSF55194 3 183 3.14E-70 T 23-04-2016 IPR023584 Ribosome recycling factor domain THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:3.40.50.300 554 644 1.7E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:3.40.50.300 287 389 1.7E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:3.40.50.300 192 286 2.6E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:3.40.50.300 4 111 2.6E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 SUPERFAMILY SSF52540 4 644 1.27E-180 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 272 4.6E-75 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 PANTHER PTHR11070:SF7 5 718 2.1E-231 T 23-04-2016 THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:1.10.10.160 115 191 6.6E-20 T 23-04-2016 IPR013986 DExx box DNA helicase domain THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Pfam PF13361 UvrD-like helicase C-terminal domain 278 618 4.0E-70 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 PANTHER PTHR11070 5 718 2.1E-231 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 THIMO_RS00360 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:1.10.486.10 390 543 1.3E-44 T 23-04-2016 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 Gene3D G3DSA:1.10.340.30 20 124 3.1E-34 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 SUPERFAMILY SSF48150 5 213 6.28E-57 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 PANTHER PTHR10359:SF17 13 211 4.6E-74 T 23-04-2016 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 PANTHER PTHR10359 13 211 4.6E-74 T 23-04-2016 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 SMART SM00478 37 194 2.3E-28 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 PIRSF PIRSF001435 2 215 7.5E-76 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 Gene3D G3DSA:1.10.1670.10 125 199 3.9E-20 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal THIMO_RS08770 5d4dcbe426a2bf322a2bb10376bf4405 215 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 33 172 3.1E-18 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 PANTHER PTHR19370 13 221 7.8E-33 T 23-04-2016 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 Pfam PF00970 Oxidoreductase FAD-binding domain 8 100 6.3E-5 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 SUPERFAMILY SSF63380 6 102 3.76E-16 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 SUPERFAMILY SSF52343 94 220 1.57E-27 T 23-04-2016 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 Gene3D G3DSA:2.40.30.10 7 96 5.6E-12 T 23-04-2016 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 Pfam PF00175 Oxidoreductase NAD-binding domain 106 204 4.5E-12 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 PRINTS PR00409 Phthalate dioxygenase reductase family signature 105 124 2.2E-5 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 PRINTS PR00409 Phthalate dioxygenase reductase family signature 190 198 2.2E-5 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 THIMO_RS08900 0a92efe1e058be15219caca719019c41 221 Gene3D G3DSA:3.40.50.80 103 220 8.1E-27 T 23-04-2016 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 Gene3D G3DSA:3.40.640.10 49 261 3.5E-59 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 PANTHER PTHR11751 16 397 3.4E-235 T 23-04-2016 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 PANTHER PTHR11751:SF302 16 397 3.4E-235 T 23-04-2016 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 239 252 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 Pfam PF00155 Aminotransferase class I and II 35 374 7.9E-55 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 Gene3D G3DSA:3.90.1150.10 262 393 3.9E-44 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS05225 069bb1f69945b7a3f532f2050ec17315 400 SUPERFAMILY SSF53383 8 393 7.43E-106 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 PANTHER PTHR30471 1 224 5.6E-129 T 23-04-2016 THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 1.1E-74 T 23-04-2016 IPR001405 RadC protein THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 PANTHER PTHR30471:SF5 1 224 5.6E-129 T 23-04-2016 THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 Gene3D G3DSA:3.40.140.10 101 224 4.5E-49 T 23-04-2016 THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 SUPERFAMILY SSF102712 114 193 3.92E-6 T 23-04-2016 THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 23-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 SUPERFAMILY SSF47781 15 91 7.56E-9 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS03540 3fcb50e79d03effa0d63c7604b74d7c9 224 Pfam PF04002 RadC-like JAB domain 103 222 3.4E-44 T 23-04-2016 IPR025657 RadC-like JAB domain THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Pfam PF14559 Tetratricopeptide repeat 512 572 5.8E-6 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Gene3D G3DSA:1.25.40.10 380 569 1.5E-35 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SUPERFAMILY SSF48452 65 357 1.9E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 371 432 9.2E-7 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 237 298 4.9E-5 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 184 228 0.0072 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 437 502 0.012 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 305 358 2.5E-4 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 PANTHER PTHR23083 112 580 2.0E-50 T 23-04-2016 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Gene3D G3DSA:1.25.40.10 281 379 6.2E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 Gene3D G3DSA:1.25.40.10 183 280 9.4E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SUPERFAMILY SSF48452 400 569 6.5E-28 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 60 93 300.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 364 397 190.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 467 501 25.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 502 535 0.48 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 399 432 9.6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 196 229 0.75 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 298 331 360.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS14880 eab20422fe0be187d12e4b9319706de3 587 PANTHER PTHR23083:SF195 112 580 2.0E-50 T 23-04-2016 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 Gene3D G3DSA:1.10.8.60 144 221 2.9E-26 T 23-04-2016 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 217 324 1.6E-6 T 23-04-2016 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 Gene3D G3DSA:1.20.272.20 222 332 6.8E-28 T 23-04-2016 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 325 6.4E-74 T 23-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 SUPERFAMILY SSF52540 1 209 4.6E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 PANTHER PTHR34388 1 333 4.9E-58 T 23-04-2016 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 SUPERFAMILY SSF48019 211 331 9.86E-23 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 Pfam PF06144 DNA polymerase III, delta subunit 20 189 1.0E-20 T 23-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 THIMO_RS05150 89062ee211d081ce4b39294e0f591733 333 Gene3D G3DSA:3.40.50.300 1 139 2.8E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14605 7353ee5288b08aec8d0bd2487439c89a 163 Gene3D G3DSA:3.40.50.150 26 150 3.9E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14605 7353ee5288b08aec8d0bd2487439c89a 163 Pfam PF08241 Methyltransferase domain 9 74 4.0E-8 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS14605 7353ee5288b08aec8d0bd2487439c89a 163 SUPERFAMILY SSF53335 25 157 8.24E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 2 460 49.885 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 SMART SM00996 6 467 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 SUPERFAMILY SSF51735 229 388 2.11E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 SUPERFAMILY SSF52283 5 143 7.37E-119 T 23-04-2016 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 SUPERFAMILY SSF52283 181 228 7.37E-119 T 23-04-2016 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 SUPERFAMILY SSF52283 389 468 7.37E-119 T 23-04-2016 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 251 267 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Gene3D G3DSA:3.40.50.1480 389 468 3.3E-33 T 23-04-2016 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Gene3D G3DSA:3.40.50.1480 180 267 5.2E-131 T 23-04-2016 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Gene3D G3DSA:3.40.50.1480 3 142 5.2E-131 T 23-04-2016 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 SMART SM00997 229 388 6.2E-115 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 229 388 5.3E-83 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 PANTHER PTHR23420 179 468 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 PANTHER PTHR23420 1 141 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 467 1.9E-151 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 PIRSF PIRSF001109 1 468 3.5E-193 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 Gene3D G3DSA:3.40.50.720 268 368 1.1E-13 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 78 92 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS10445 2399c84c99287f4475789430bbb312f2 468 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 7 460 2.2E-192 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 THIMO_RS05740 d39bc48a2066e20268625315ef06648c 163 SUPERFAMILY SSF55040 11 155 6.02E-59 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 THIMO_RS05740 d39bc48a2066e20268625315ef06648c 163 PANTHER PTHR22960 1 158 3.4E-86 T 23-04-2016 THIMO_RS05740 d39bc48a2066e20268625315ef06648c 163 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 35.456 T 23-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 THIMO_RS05740 d39bc48a2066e20268625315ef06648c 163 Pfam PF01967 MoaC family 15 150 1.7E-53 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 THIMO_RS05740 d39bc48a2066e20268625315ef06648c 163 Gene3D G3DSA:3.30.70.640 4 157 1.4E-66 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 THIMO_RS05740 d39bc48a2066e20268625315ef06648c 163 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 8.9E-60 T 23-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 THIMO_RS06680 82d24b2fa8853f12c9e1482660734550 259 Pfam PF02080 TrkA-C domain 156 223 5.3E-11 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS06680 82d24b2fa8853f12c9e1482660734550 259 SUPERFAMILY SSF116726 143 224 2.22E-14 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS06680 82d24b2fa8853f12c9e1482660734550 259 Gene3D G3DSA:3.30.70.1450 153 226 2.6E-15 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 15 32 1.6E-34 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 125 143 1.6E-34 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 99 121 1.6E-34 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 75 95 1.6E-34 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 147 32.261 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 8 144 3.7E-51 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 SUPERFAMILY SSF54611 4 144 2.62E-50 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PANTHER PTHR36918:SF1 1 156 3.0E-71 T 23-04-2016 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 Gene3D G3DSA:3.10.420.10 5 153 3.0E-57 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PANTHER PTHR36918 1 156 3.0E-71 T 23-04-2016 THIMO_RS17450 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 Pfam PF02556 Preprotein translocase subunit SecB 7 145 1.1E-55 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 PANTHER PTHR12526 50 88 2.2E-36 T 23-04-2016 THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 PANTHER PTHR12526 104 113 2.2E-36 T 23-04-2016 THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 PANTHER PTHR12526 165 396 2.2E-36 T 23-04-2016 THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Gene3D G3DSA:3.40.50.2000 226 372 1.5E-23 T 23-04-2016 THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 SUPERFAMILY SSF53756 36 394 2.47E-59 T 23-04-2016 THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Pfam PF13439 Glycosyltransferase Family 4 47 206 6.5E-9 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS06795 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Pfam PF00534 Glycosyl transferases group 1 226 374 4.1E-34 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS00540 d473fc709d34d82cca4f5111bbab668c 162 PANTHER PTHR33221:SF1 2 151 2.3E-61 T 23-04-2016 THIMO_RS00540 d473fc709d34d82cca4f5111bbab668c 162 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 130 2.3E-46 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type THIMO_RS00540 d473fc709d34d82cca4f5111bbab668c 162 Pfam PF02082 Transcriptional regulator 2 83 3.1E-27 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type THIMO_RS00540 d473fc709d34d82cca4f5111bbab668c 162 PANTHER PTHR33221 2 151 2.3E-61 T 23-04-2016 THIMO_RS00540 d473fc709d34d82cca4f5111bbab668c 162 Gene3D G3DSA:1.10.10.10 2 138 5.6E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00540 d473fc709d34d82cca4f5111bbab668c 162 SUPERFAMILY SSF46785 2 132 2.04E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS07985 58c110176b989e23df16e30995c1bfb1 369 Pfam PF12698 ABC-2 family transporter protein 22 360 4.9E-39 T 23-04-2016 THIMO_RS07985 58c110176b989e23df16e30995c1bfb1 369 PANTHER PTHR30294 1 367 1.6E-86 T 23-04-2016 THIMO_RS07985 58c110176b989e23df16e30995c1bfb1 369 PANTHER PTHR30294:SF12 1 367 1.6E-86 T 23-04-2016 THIMO_RS07510 8bf7ccd924c27c36bf467da8d71501ca 116 PANTHER PTHR33930 1 111 8.4E-19 T 23-04-2016 THIMO_RS07510 8bf7ccd924c27c36bf467da8d71501ca 116 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 42 92 1.0E-7 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS07510 8bf7ccd924c27c36bf467da8d71501ca 116 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 2.5E-16 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS07510 8bf7ccd924c27c36bf467da8d71501ca 116 Gene3D G3DSA:1.20.1290.10 17 112 6.6E-25 T 23-04-2016 IPR029032 AhpD-like THIMO_RS07510 8bf7ccd924c27c36bf467da8d71501ca 116 SUPERFAMILY SSF69118 11 111 3.53E-23 T 23-04-2016 IPR029032 AhpD-like THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 Gene3D G3DSA:3.60.110.10 232 519 5.4E-54 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 Pfam PF00795 Carbon-nitrogen hydrolase 236 499 1.8E-27 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 PANTHER PTHR23088 220 521 7.0E-115 T 23-04-2016 THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 Gene3D G3DSA:3.40.630.30 12 205 2.3E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 SUPERFAMILY SSF56317 232 502 5.23E-54 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 SUPERFAMILY SSF55729 10 194 1.85E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 PANTHER PTHR23088:SF12 220 521 7.0E-115 T 23-04-2016 THIMO_RS08310 d522dec95da00eecad3c2f24f1ce2395 522 Pfam PF00583 Acetyltransferase (GNAT) family 61 144 7.8E-5 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 Gene3D G3DSA:1.10.1060.10 371 448 2.6E-11 T 23-04-2016 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 PANTHER PTHR11780 14 445 2.5E-136 T 23-04-2016 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 455 124.52 T 23-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 448 2.8E-138 T 23-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 Pfam PF10531 SLBB domain 300 347 2.7E-11 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 135 285 2.0E-49 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 SUPERFAMILY SSF46548 338 445 1.1E-14 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 SUPERFAMILY SSF142019 118 307 3.14E-54 T 23-04-2016 THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 104 8.7E-18 T 23-04-2016 IPR026902 RnfC Barrel sandwich hybrid domain THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 419 430 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 380 391 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01125 8ece4f0acfbf83c56b949d389247c51f 455 PANTHER PTHR11780:SF1 14 445 2.5E-136 T 23-04-2016 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 Pfam PF13522 Glutamine amidotransferase domain 61 208 3.2E-15 T 23-04-2016 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 465 4.7E-154 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 PANTHER PTHR11907:SF4 1 479 2.4E-258 T 23-04-2016 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 SUPERFAMILY SSF53271 250 484 3.73E-71 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 PIRSF PIRSF000485 1 482 7.5E-159 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 Pfam PF00156 Phosphoribosyl transferase domain 268 393 6.0E-8 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 Gene3D G3DSA:3.40.50.2020 272 444 2.8E-46 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 467 44.046 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 PANTHER PTHR11907 1 479 2.4E-258 T 23-04-2016 THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 SUPERFAMILY SSF56235 2 257 7.03E-71 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS12635 bb2f03527e9ec1ec38ca0d5aa1477345 504 Gene3D G3DSA:3.60.20.10 2 258 5.1E-59 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 23-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 SMART SM01382 124 252 1.2E-91 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.2E-125 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 SMART SM01383 42 118 7.8E-43 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 Gene3D G3DSA:2.40.50.140 1 113 7.4E-45 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 PANTHER PTHR13691 1 274 1.9E-136 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 PIRSF PIRSF002158 9 275 1.3E-103 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 Gene3D G3DSA:4.10.950.10 196 272 2.4E-34 T 23-04-2016 IPR014726 Ribosomal protein L2, domain 3 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 SUPERFAMILY SSF50249 3 124 5.14E-45 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 116 1.7E-30 T 23-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.426 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 PANTHER PTHR13691:SF5 1 274 1.9E-136 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 2.6E-57 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 Gene3D G3DSA:2.30.30.30 118 195 4.1E-34 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 THIMO_RS13615 9ca3b82d8d7af4eeb256b7e301a98929 275 SUPERFAMILY SSF50104 126 272 5.05E-62 T 23-04-2016 IPR008991 Translation protein SH3-like domain THIMO_RS03325 1d72ef7d54ea32be2ad8fabd5dfae594 213 Gene3D G3DSA:3.40.50.410 6 165 5.2E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS03325 1d72ef7d54ea32be2ad8fabd5dfae594 213 SMART SM00327 3 178 5.9E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS03325 1d72ef7d54ea32be2ad8fabd5dfae594 213 PIRSF PIRSF020634 1 211 8.1E-67 T 23-04-2016 IPR011392 Tellurite resistance, TerY THIMO_RS03325 1d72ef7d54ea32be2ad8fabd5dfae594 213 SUPERFAMILY SSF53300 2 173 3.66E-20 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS03325 1d72ef7d54ea32be2ad8fabd5dfae594 213 Pfam PF00092 von Willebrand factor type A domain 6 157 4.7E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS12375 b6eb1073745dc4243d5cefe0b7ee8802 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 22 87 6.8E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12375 b6eb1073745dc4243d5cefe0b7ee8802 104 Gene3D G3DSA:1.10.760.10 22 91 1.3E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS12375 b6eb1073745dc4243d5cefe0b7ee8802 104 SUPERFAMILY SSF46626 4 93 8.75E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05315 bc2d127c6e6c13277057400e7c6a4438 596 Gene3D G3DSA:1.25.40.10 29 124 5.9E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS05315 bc2d127c6e6c13277057400e7c6a4438 596 SUPERFAMILY SSF48452 31 127 8.49E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS05315 bc2d127c6e6c13277057400e7c6a4438 596 SMART SM00028 80 113 9.5E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS05315 bc2d127c6e6c13277057400e7c6a4438 596 Pfam PF13432 Tetratricopeptide repeat 51 113 2.8E-9 T 23-04-2016 THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 Gene3D G3DSA:3.40.190.10 71 163 7.3E-11 T 23-04-2016 THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 SUPERFAMILY SSF53850 79 289 5.25E-36 T 23-04-2016 THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 SUPERFAMILY SSF46785 2 102 2.72E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 PANTHER PTHR30537:SF5 1 287 2.0E-73 T 23-04-2016 THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 53 3.6E-12 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 Pfam PF03466 LysR substrate binding domain 78 287 9.9E-33 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 Gene3D G3DSA:1.10.10.10 1 70 1.5E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 PANTHER PTHR30537 1 287 2.0E-73 T 23-04-2016 THIMO_RS08115 04742a7394d4fb5e3de71e3e0228b59b 320 Gene3D G3DSA:3.40.190.10 164 255 1.8E-15 T 23-04-2016 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 702 55.449 T 23-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 SMART SM00436 106 194 2.9E-50 T 23-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 594 628 4.7E-14 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 686 724 3.4E-13 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 644 680 5.7E-16 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:1.10.460.10 137 184 3.5E-60 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:1.10.460.10 474 578 3.5E-60 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01131 DNA topoisomerase 132 563 2.6E-132 T 23-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PANTHER PTHR11390:SF27 1 768 0.0 T 23-04-2016 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 292 314 - T 23-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 SMART SM00437 255 527 5.8E-122 T 23-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.40.50.140 1 136 2.4E-44 T 23-04-2016 IPR006171 Toprim domain THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 164 182 2.8E-37 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 383 399 2.8E-37 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 305 314 2.8E-37 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 2.8E-37 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 2.8E-37 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 SUPERFAMILY SSF57783 639 681 5.61E-12 T 23-04-2016 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 SUPERFAMILY SSF56712 1 606 1.22E-193 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:2.70.20.10 329 473 1.3E-38 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:2.70.20.10 186 326 2.1E-30 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 627 2.9E-246 T 23-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.30.65.10 593 628 8.9E-13 T 23-04-2016 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.30.65.10 684 717 3.7E-5 T 23-04-2016 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.30.65.10 640 679 1.7E-13 T 23-04-2016 THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01751 Toprim domain 3 115 9.0E-28 T 23-04-2016 IPR006171 Toprim domain THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 SMART SM00493 1 101 6.0E-32 T 23-04-2016 IPR006171 Toprim domain THIMO_RS06005 124caea3429b924ec34f183dd85cab8c 794 PANTHER PTHR11390 1 768 0.0 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 THIMO_RS10560 69bfeb0506974be6c7cd72ba1aa248b3 291 Pfam PF00892 EamA-like transporter family 4 134 7.6E-13 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 THIMO_RS10560 69bfeb0506974be6c7cd72ba1aa248b3 291 Pfam PF00892 EamA-like transporter family 158 290 4.3E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 THIMO_RS10560 69bfeb0506974be6c7cd72ba1aa248b3 291 SUPERFAMILY SSF103481 196 291 1.7E-5 T 23-04-2016 THIMO_RS10560 69bfeb0506974be6c7cd72ba1aa248b3 291 SUPERFAMILY SSF103481 36 138 4.84E-13 T 23-04-2016 THIMO_RS17165 82565c63af4c935f778a3f5cf3eb0b24 168 PANTHER PTHR11527:SF122 49 168 5.5E-29 T 23-04-2016 THIMO_RS17165 82565c63af4c935f778a3f5cf3eb0b24 168 SUPERFAMILY SSF49764 56 165 3.66E-30 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS17165 82565c63af4c935f778a3f5cf3eb0b24 168 PANTHER PTHR11527 49 168 5.5E-29 T 23-04-2016 IPR031107 Small heat shock protein HSP20 THIMO_RS17165 82565c63af4c935f778a3f5cf3eb0b24 168 Pfam PF00011 Hsp20/alpha crystallin family 68 168 6.4E-20 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain THIMO_RS17165 82565c63af4c935f778a3f5cf3eb0b24 168 Gene3D G3DSA:2.60.40.790 34 167 8.8E-30 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS01015 c770e9f6f3ad99025cdbbf4b9cb59db5 155 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 15 150 7.4E-54 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01015 c770e9f6f3ad99025cdbbf4b9cb59db5 155 SUPERFAMILY SSF52121 4 154 5.36E-61 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01015 c770e9f6f3ad99025cdbbf4b9cb59db5 155 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 154 31.424 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01015 c770e9f6f3ad99025cdbbf4b9cb59db5 155 Gene3D G3DSA:3.40.50.960 5 154 2.6E-64 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01015 c770e9f6f3ad99025cdbbf4b9cb59db5 155 PANTHER PTHR21058 1 155 1.3E-73 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01015 c770e9f6f3ad99025cdbbf4b9cb59db5 155 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 14 151 2.2E-56 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS08510 8789b7a4538f4ab9eb6145607663ab6b 278 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 14 268 38.305 T 23-04-2016 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08510 8789b7a4538f4ab9eb6145607663ab6b 278 PANTHER PTHR36445 9 277 2.5E-80 T 23-04-2016 THIMO_RS08510 8789b7a4538f4ab9eb6145607663ab6b 278 PANTHER PTHR36445:SF1 9 277 2.5E-80 T 23-04-2016 THIMO_RS08510 8789b7a4538f4ab9eb6145607663ab6b 278 Pfam PF02649 Type I GTP cyclohydrolase folE2 15 263 1.5E-98 T 23-04-2016 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 THIMO_RS08510 8789b7a4538f4ab9eb6145607663ab6b 278 Gene3D G3DSA:3.10.270.10 14 267 2.4E-112 T 23-04-2016 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 PANTHER PTHR11699 4 453 1.4E-238 T 23-04-2016 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 Pfam PF00171 Aldehyde dehydrogenase family 3 450 1.3E-140 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 Gene3D G3DSA:3.40.605.10 4 241 5.4E-77 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 255 266 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 SUPERFAMILY SSF53720 4 453 8.25E-144 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 Gene3D G3DSA:3.40.309.10 242 426 4.0E-57 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 THIMO_RS05895 66d7a8ede3f858afd822f044a150273c 454 PANTHER PTHR11699:SF28 4 453 1.4E-238 T 23-04-2016 THIMO_RS09215 0bed5636b8328d368e1eff0921bc9cb1 362 SUPERFAMILY SSF102114 53 265 5.89E-12 T 23-04-2016 THIMO_RS09215 0bed5636b8328d368e1eff0921bc9cb1 362 Pfam PF04055 Radical SAM superfamily 70 246 2.3E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS09215 0bed5636b8328d368e1eff0921bc9cb1 362 Gene3D G3DSA:3.20.20.70 72 264 1.9E-8 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS09215 0bed5636b8328d368e1eff0921bc9cb1 362 PANTHER PTHR11228:SF26 13 314 7.7E-84 T 23-04-2016 THIMO_RS09215 0bed5636b8328d368e1eff0921bc9cb1 362 PANTHER PTHR11228 13 314 7.7E-84 T 23-04-2016 THIMO_RS09215 0bed5636b8328d368e1eff0921bc9cb1 362 SMART SM00729 65 282 2.3E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 PANTHER PTHR33362:SF7 3 170 3.8E-184 T 23-04-2016 THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 PANTHER PTHR33362:SF7 191 456 3.8E-184 T 23-04-2016 THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 PANTHER PTHR33362 3 170 3.8E-184 T 23-04-2016 THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 PANTHER PTHR33362 191 456 3.8E-184 T 23-04-2016 THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 455 8.0E-105 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 449 7.0E-91 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit THIMO_RS03025 82591515a6f7d6abc9a8fb739a48716c 459 PIRSF PIRSF006066 4 459 4.2E-67 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 THIMO_RS12825 12120dd0df5c4aa84e8fffb4c2db3c95 238 Pfam PF04288 MukE-like family 9 222 1.9E-36 T 23-04-2016 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 THIMO_RS00575 66e5cadfad4a0e2c72fa63c6ac64ff18 352 SUPERFAMILY SSF51569 10 343 5.86E-115 T 23-04-2016 THIMO_RS00575 66e5cadfad4a0e2c72fa63c6ac64ff18 352 Gene3D G3DSA:3.20.20.70 10 344 4.0E-129 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS00575 66e5cadfad4a0e2c72fa63c6ac64ff18 352 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 10 343 1.6E-132 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS00575 66e5cadfad4a0e2c72fa63c6ac64ff18 352 Pfam PF00793 DAHP synthetase I family 41 335 1.5E-81 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS00575 66e5cadfad4a0e2c72fa63c6ac64ff18 352 PIRSF PIRSF001361 7 349 4.3E-140 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS00575 66e5cadfad4a0e2c72fa63c6ac64ff18 352 PANTHER PTHR21225 10 344 7.2E-176 T 23-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 Gene3D G3DSA:3.30.750.24 450 562 1.9E-9 T 23-04-2016 IPR002645 STAS domain THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 SUPERFAMILY SSF52091 449 562 2.94E-13 T 23-04-2016 IPR002645 STAS domain THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 TIGRFAM TIGR00815 sulP: sulfate permease 14 557 2.7E-116 T 23-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 Pfam PF01740 STAS domain 450 557 3.8E-10 T 23-04-2016 IPR002645 STAS domain THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 PANTHER PTHR11814 9 572 2.5E-163 T 23-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 PANTHER PTHR11814:SF71 9 572 2.5E-163 T 23-04-2016 THIMO_RS10350 25350422a6a59e961a5eb64e4e7cd23c 585 Pfam PF00916 Sulfate permease family 28 399 1.2E-92 T 23-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.70.380 700 791 2.2E-25 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SMART SM00874 403 471 6.7E-22 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF54991 693 791 1.96E-26 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.56.20 402 475 2.0E-20 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF03483 B3/4 domain 212 385 1.8E-68 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.930.10 497 687 1.1E-59 T 23-04-2016 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SMART SM00873 212 385 7.2E-94 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF56037 196 392 6.54E-72 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.50.40.10 201 392 4.8E-78 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF03484 tRNA synthetase B5 domain 406 471 4.0E-14 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 43.186 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.56.10 1 38 4.9E-25 T 23-04-2016 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.56.10 155 184 4.9E-25 T 23-04-2016 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF50249 35 196 1.2E-48 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 PANTHER PTHR10947:SF0 2 791 1.2E-286 T 23-04-2016 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 PANTHER PTHR10947 2 791 1.2E-286 T 23-04-2016 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF01588 Putative tRNA binding domain 45 145 1.2E-23 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:2.40.50.140 41 154 1.4E-44 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 2.7E-246 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SMART SM00896 698 791 3.8E-35 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF55681 467 687 4.32E-48 T 23-04-2016 THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF46955 404 475 2.75E-15 T 23-04-2016 IPR009061 Putative DNA-binding domain THIMO_RS13450 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 5.4E-25 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PANTHER PTHR22773:SF50 1 614 1.3E-250 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 83 108 2.5E-52 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 170 191 2.5E-52 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 334 346 2.5E-52 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 266 292 2.5E-52 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 265 2.5E-52 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 439 458 2.5E-52 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 284 306 6.8E-13 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 59 83 6.8E-13 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 85 105 6.8E-13 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 438 460 6.8E-13 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 PANTHER PTHR22773 1 614 1.3E-250 T 23-04-2016 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 Pfam PF00361 Proton-conducting membrane transporter 146 435 8.1E-82 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 65 134 1.0E-24 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal THIMO_RS02845 be7dc2489aac59fde463f14688d728d6 664 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 661 8.1E-238 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 Gene3D G3DSA:3.65.10.10 211 407 1.2E-59 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 SUPERFAMILY SSF55205 2 408 6.05E-141 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 406 6.0E-177 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 Gene3D G3DSA:3.65.10.10 11 210 6.2E-68 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 407 45.666 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 PANTHER PTHR21090 2 409 4.1E-199 T 23-04-2016 THIMO_RS13110 b7f5d79e488a144c760588fa4bae0a48 409 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 2 397 2.8E-114 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 Gene3D G3DSA:3.90.760.10 355 427 2.1E-22 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 SUPERFAMILY SSF55424 355 427 3.84E-18 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 PANTHER PTHR10632:SF10 28 374 9.1E-108 T 23-04-2016 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 PANTHER PTHR10632 28 374 9.1E-108 T 23-04-2016 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 356 426 2.1E-21 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 30 338 2.4E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 SUPERFAMILY SSF51905 141 281 1.6E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 Gene3D G3DSA:3.50.50.60 29 144 8.1E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 SUPERFAMILY SSF51905 29 178 8.37E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS10715 3fe8c3a14f4ec99761c919a2bb25cd48 427 Gene3D G3DSA:3.50.50.60 145 281 6.6E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS11830 eabba98114923c13db5229ccd539e152 183 Pfam PF04366 Las17-binding protein actin regulator 96 179 4.6E-9 T 23-04-2016 IPR007461 Ysc84 actin-binding domain THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 SUPERFAMILY SSF53187 297 373 8.16E-54 T 23-04-2016 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 SUPERFAMILY SSF53187 153 249 8.16E-54 T 23-04-2016 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 PANTHER PTHR30404 1 402 1.5E-90 T 23-04-2016 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 SUPERFAMILY SSF54106 389 433 4.71E-10 T 23-04-2016 IPR018392 LysM domain THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 PANTHER PTHR30404:SF1 1 402 1.5E-90 T 23-04-2016 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 Pfam PF01476 LysM domain 393 433 5.5E-10 T 23-04-2016 IPR018392 LysM domain THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 Gene3D G3DSA:3.40.630.40 298 374 2.2E-57 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 Gene3D G3DSA:3.40.630.40 153 250 2.2E-57 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 155 370 4.7E-48 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 SMART SM00257 390 433 2.0E-8 T 23-04-2016 IPR018392 LysM domain THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 Gene3D G3DSA:3.10.350.10 390 434 4.4E-14 T 23-04-2016 IPR018392 LysM domain THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 SMART SM00646 215 370 6.8E-51 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 THIMO_RS08070 e9fb0c3719e4d264e65c8e4102e15e02 435 Pfam PF11741 AMIN domain 27 125 3.6E-16 T 23-04-2016 IPR021731 AMIN domain THIMO_RS12610 d7a5f64f3650e49f466297dcbccdc0ae 76 SUPERFAMILY SSF64307 3 75 1.83E-23 T 23-04-2016 IPR001455 TusA-like domain THIMO_RS12610 d7a5f64f3650e49f466297dcbccdc0ae 76 Pfam PF01206 Sulfurtransferase TusA 7 75 7.4E-23 T 23-04-2016 IPR001455 TusA-like domain THIMO_RS12610 d7a5f64f3650e49f466297dcbccdc0ae 76 PANTHER PTHR33279 3 75 2.8E-22 T 23-04-2016 THIMO_RS12610 d7a5f64f3650e49f466297dcbccdc0ae 76 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 23-04-2016 IPR001455 TusA-like domain THIMO_RS12610 d7a5f64f3650e49f466297dcbccdc0ae 76 Gene3D G3DSA:3.30.110.40 4 75 3.2E-30 T 23-04-2016 IPR001455 TusA-like domain THIMO_RS03230 d5b5d4bc2b6df7665bdd70b2bc336a68 492 SUPERFAMILY SSF52540 9 372 8.61E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03230 d5b5d4bc2b6df7665bdd70b2bc336a68 492 PANTHER PTHR30121:SF3 1 442 1.4E-165 T 23-04-2016 THIMO_RS03230 d5b5d4bc2b6df7665bdd70b2bc336a68 492 Pfam PF05872 Bacterial protein of unknown function (DUF853) 8 491 1.0E-222 T 23-04-2016 IPR033186 Helicase HerA-like C-terminal THIMO_RS03230 d5b5d4bc2b6df7665bdd70b2bc336a68 492 PANTHER PTHR30121 1 442 1.4E-165 T 23-04-2016 THIMO_RS03230 d5b5d4bc2b6df7665bdd70b2bc336a68 492 Gene3D G3DSA:3.40.50.300 205 379 4.7E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03230 d5b5d4bc2b6df7665bdd70b2bc336a68 492 Gene3D G3DSA:3.40.50.300 3 109 4.7E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17545 c3481412b84ba56eca43cd1a9d7856e9 191 PANTHER PTHR32097 1 191 4.8E-91 T 23-04-2016 THIMO_RS17545 c3481412b84ba56eca43cd1a9d7856e9 191 Pfam PF02342 TerD domain 1 187 2.9E-87 T 23-04-2016 IPR003325 TerD domain GO:0006950 THIMO_RS17545 c3481412b84ba56eca43cd1a9d7856e9 191 Gene3D G3DSA:2.60.60.30 18 185 6.7E-76 T 23-04-2016 THIMO_RS04580 97551bfaa2a04fdee6109f5b6c3130f8 193 PANTHER PTHR30335:SF0 2 193 1.0E-124 T 23-04-2016 THIMO_RS04580 97551bfaa2a04fdee6109f5b6c3130f8 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 4.0E-88 T 23-04-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 THIMO_RS04580 97551bfaa2a04fdee6109f5b6c3130f8 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 191 25.959 T 23-04-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 THIMO_RS04580 97551bfaa2a04fdee6109f5b6c3130f8 193 PANTHER PTHR30335 2 193 1.0E-124 T 23-04-2016 THIMO_RS04580 97551bfaa2a04fdee6109f5b6c3130f8 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 3.4E-61 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS04580 97551bfaa2a04fdee6109f5b6c3130f8 193 PIRSF PIRSF006102 1 193 2.1E-62 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02913 FAD linked oxidases, C-terminal domain 425 547 1.3E-6 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02913 FAD linked oxidases, C-terminal domain 673 777 5.1E-19 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF46548 795 907 3.66E-12 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF01565 FAD binding domain 169 314 7.9E-25 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02754 Cysteine-rich domain 1025 1113 1.1E-4 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02754 Cysteine-rich domain 1150 1237 0.14 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Gene3D G3DSA:1.10.1060.10 803 909 1.7E-13 T 23-04-2016 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF12447 Protein of unknown function (DUF3683) 7 119 2.4E-48 T 23-04-2016 IPR022153 Protein of unknown function DUF3683 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Gene3D G3DSA:3.30.43.10 126 285 1.5E-31 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF13183 4Fe-4S dicluster domain 813 892 4.7E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF56176 130 398 3.46E-53 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF55103 419 550 5.07E-15 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF55103 561 607 7.19E-28 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 878 889 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 PANTHER PTHR11748 70 317 3.5E-40 T 23-04-2016 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 PANTHER PTHR11748 549 779 3.5E-40 T 23-04-2016 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 PANTHER PTHR11748 381 454 3.5E-40 T 23-04-2016 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF55103 655 780 7.19E-28 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS08210 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF11880 Domain of unknown function (DUF3400) 1242 1285 1.3E-21 T 23-04-2016 IPR021817 Protein of unknown function DUF3400 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 SUPERFAMILY SSF52540 272 407 9.14E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 PANTHER PTHR11649 272 415 3.7E-16 T 23-04-2016 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 PANTHER PTHR11649 482 495 3.7E-16 T 23-04-2016 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 PANTHER PTHR11649 435 446 3.7E-16 T 23-04-2016 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 PANTHER PTHR11649:SF59 482 495 3.7E-16 T 23-04-2016 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 PANTHER PTHR11649:SF59 435 446 3.7E-16 T 23-04-2016 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 Pfam PF01926 50S ribosome-binding GTPase 277 375 5.7E-13 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 Gene3D G3DSA:3.40.50.300 266 403 3.3E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04190 ae2c4227efaeff4ffbc7fc274b796e41 513 PANTHER PTHR11649:SF59 272 415 3.7E-16 T 23-04-2016 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 26 321 2.0E-101 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Gene3D G3DSA:1.10.150.20 251 333 9.1E-36 T 23-04-2016 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Gene3D G3DSA:2.170.120.12 68 178 3.3E-37 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Gene3D G3DSA:3.30.1360.10 23 67 7.4E-9 T 23-04-2016 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 SMART SM00662 25 235 2.8E-89 T 23-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF47789 256 331 1.44E-25 T 23-04-2016 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF55257 10 55 4.51E-26 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF55257 180 232 4.51E-26 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 261 331 1.0E-31 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 PANTHER PTHR32108 7 335 1.7E-133 T 23-04-2016 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 PANTHER PTHR32108:SF0 7 335 1.7E-133 T 23-04-2016 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 256 313 7.9E-23 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 64 157 2.7E-21 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 322 33.699 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF56553 55 179 6.41E-38 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 THIMO_RS13505 286aa67914837a96d95b19abd7a5ad7a 337 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 31 229 7.3E-22 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 PANTHER PTHR11921:SF24 6 419 3.5E-83 T 23-04-2016 THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 28 39 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 SUPERFAMILY SSF46548 14 127 6.54E-17 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 Pfam PF02754 Cysteine-rich domain 307 393 3.3E-15 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 Pfam PF13183 4Fe-4S dicluster domain 25 112 1.2E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 PANTHER PTHR11921 6 419 3.5E-83 T 23-04-2016 THIMO_RS15910 1b9601548a7cbce6c0113ff9244c425f 420 Gene3D G3DSA:1.10.1060.10 25 129 2.6E-17 T 23-04-2016 THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 PANTHER PTHR33449 2 107 5.4E-46 T 23-04-2016 THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 3 96 21.543 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 PANTHER PTHR33449:SF1 2 107 5.4E-46 T 23-04-2016 THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 103 4.1E-32 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 PIRSF PIRSF004555 3 107 8.3E-37 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 SUPERFAMILY SSF82607 9 101 8.11E-34 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 Gene3D G3DSA:3.30.1310.10 3 107 2.5E-45 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family THIMO_RS09590 08f8cec7ac027ef851e42f8fce08dc44 107 Pfam PF02575 YbaB/EbfC DNA-binding family 9 97 1.6E-33 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family THIMO_RS10085 194f661597c94d2e9a4c3128e1d2a1df 121 SUPERFAMILY SSF52091 1 118 3.34E-36 T 23-04-2016 IPR002645 STAS domain THIMO_RS10085 194f661597c94d2e9a4c3128e1d2a1df 121 Gene3D G3DSA:3.40.50.10600 1 119 2.5E-41 T 23-04-2016 IPR021866 SpoIIAA-like THIMO_RS10085 194f661597c94d2e9a4c3128e1d2a1df 121 Pfam PF11964 SpoIIAA-like 12 118 4.7E-22 T 23-04-2016 IPR021866 SpoIIAA-like THIMO_RS17570 c246032c84fb7aabb0bed7cafb4688c6 364 Pfam PF15608 PELOTA RNA binding domain 284 361 1.2E-28 T 23-04-2016 IPR028157 PELOTA RNA-binding domain KEGG: 00900+3.4.22.- THIMO_RS17570 c246032c84fb7aabb0bed7cafb4688c6 364 Pfam PF11202 Phosphoribosyl transferase (PRTase) 12 260 1.6E-92 T 23-04-2016 IPR011215 Phosphoribosyl transferase KEGG: 00900+3.4.22.- THIMO_RS17570 c246032c84fb7aabb0bed7cafb4688c6 364 PIRSF PIRSF020979 5 364 8.3E-98 T 23-04-2016 IPR011215 Phosphoribosyl transferase KEGG: 00900+3.4.22.- THIMO_RS00050 39904c20928136f4985a423c0c2f5b9d 120 Pfam PF05717 IS66 Orf2 like protein 9 105 6.7E-34 T 23-04-2016 IPR008878 Transposase IS66, Orf2 THIMO_RS00050 39904c20928136f4985a423c0c2f5b9d 120 PANTHER PTHR36455 2 120 9.6E-24 T 23-04-2016 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 SMART SM00278 580 599 29.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 SMART SM00278 548 567 76.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 SUPERFAMILY SSF82771 16 98 3.92E-18 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 SUPERFAMILY SSF46600 189 241 1.2E-11 T 23-04-2016 IPR001943 UVR domain GO:0005515 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Gene3D G3DSA:1.10.150.20 547 601 2.4E-21 T 23-04-2016 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 SMART SM00465 16 96 3.9E-17 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Hamap MF_00203 UvrABC system protein C [uvrC]. 3 599 28.614 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF01541 GIY-YIG catalytic domain 18 89 6.6E-7 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 PANTHER PTHR30562 7 600 1.1E-260 T 23-04-2016 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF12826 Helix-hairpin-helix motif 552 603 9.0E-9 T 23-04-2016 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 10 580 1.8E-183 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 PANTHER PTHR30562:SF1 7 600 1.1E-260 T 23-04-2016 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF02151 UvrB/uvrC motif 202 236 2.7E-8 T 23-04-2016 IPR001943 UVR domain GO:0005515 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Gene3D G3DSA:4.10.860.10 181 241 1.1E-15 T 23-04-2016 IPR001943 UVR domain GO:0005515 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 SUPERFAMILY SSF47781 513 602 9.21E-23 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Gene3D G3DSA:3.40.1440.10 17 92 8.6E-4 T 23-04-2016 IPR027299 GIY-YIG domain THIMO_RS12520 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 380 534 6.8E-51 T 23-04-2016 IPR001162 UvrC family homology region THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 SUPERFAMILY SSF56214 28 121 1.7E-13 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 SUPERFAMILY SSF56214 129 226 2.62E-12 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 Gene3D G3DSA:3.90.470.20 141 191 3.4E-9 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 PANTHER PTHR12215 10 189 2.5E-24 T 23-04-2016 THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 130 189 3.2E-6 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 Gene3D G3DSA:3.90.470.20 24 140 3.2E-23 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 THIMO_RS01635 6bf653bd8bbea2da65bb70de7d9d7840 240 PANTHER PTHR12215:SF10 10 189 2.5E-24 T 23-04-2016 THIMO_RS15370 3f43dc94ea5ef5d8a4cb12ed1fdb15e7 114 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 4 105 20.843 T 23-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 THIMO_RS15370 3f43dc94ea5ef5d8a4cb12ed1fdb15e7 114 PIRSF PIRSF005790 1 107 3.5E-32 T 23-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 THIMO_RS15370 3f43dc94ea5ef5d8a4cb12ed1fdb15e7 114 Pfam PF03206 Nitrogen fixation protein NifW 11 102 8.0E-32 T 23-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 THIMO_RS16915 c82dc94c52f53d0eb3b07ce53aaee79d 199 SUPERFAMILY SSF53254 6 195 4.28E-44 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS16915 c82dc94c52f53d0eb3b07ce53aaee79d 199 Gene3D G3DSA:3.40.50.1240 7 195 8.5E-44 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS16915 c82dc94c52f53d0eb3b07ce53aaee79d 199 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 8 195 5.7E-44 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS16915 c82dc94c52f53d0eb3b07ce53aaee79d 199 PANTHER PTHR23029 8 182 9.6E-36 T 23-04-2016 THIMO_RS16915 c82dc94c52f53d0eb3b07ce53aaee79d 199 SMART SM00855 5 156 5.8E-8 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS16915 c82dc94c52f53d0eb3b07ce53aaee79d 199 PANTHER PTHR23029:SF1 8 182 9.6E-36 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 Pfam PF12710 haloacid dehalogenase-like hydrolase 193 360 7.7E-27 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 Pfam PF13740 ACT domain 3 78 3.9E-26 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 PANTHER PTHR10000:SF7 169 401 4.1E-92 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 177 395 4.3E-80 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 SUPERFAMILY SSF55021 4 80 1.13E-12 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 192 362 3.4E-34 T 23-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 Gene3D G3DSA:3.40.50.1000 254 382 6.7E-46 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 Gene3D G3DSA:1.10.150.210 202 253 5.1E-25 T 23-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 Gene3D G3DSA:3.30.70.260 112 192 1.7E-10 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 Gene3D G3DSA:3.30.70.260 2 80 7.7E-16 T 23-04-2016 THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 SUPERFAMILY SSF56784 191 397 1.04E-54 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17285 ce370c1db36f493daeb46d21b0664dd8 410 PANTHER PTHR10000 169 401 4.1E-92 T 23-04-2016 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 SMART SM01390 3 95 8.6E-44 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 3.1E-28 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 SMART SM00363 96 160 2.2E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 PANTHER PTHR11831:SF4 1 206 1.3E-86 T 23-04-2016 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 PANTHER PTHR11831 1 206 1.3E-86 T 23-04-2016 IPR022801 Ribosomal protein S4/S9 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 23-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 Gene3D G3DSA:1.10.1050.10 1 101 3.8E-40 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 SUPERFAMILY SSF55174 3 206 6.54E-70 T 23-04-2016 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 Pfam PF01479 S4 domain 96 143 6.1E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 34.501 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 Gene3D G3DSA:3.10.290.10 102 190 4.1E-32 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS13510 a00633c19e486e2ef60245e63bc72902 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 4.9E-78 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 Gene3D G3DSA:3.40.190.10 88 174 2.6E-12 T 23-04-2016 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 PANTHER PTHR30126 1 277 6.0E-81 T 23-04-2016 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 PANTHER PTHR30126:SF21 1 277 6.0E-81 T 23-04-2016 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 SUPERFAMILY SSF46785 1 110 2.99E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 SUPERFAMILY SSF53850 89 279 2.48E-20 T 23-04-2016 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 Gene3D G3DSA:1.10.10.10 1 82 4.0E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.3E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.3E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.3E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS16010 24e1a5535366a5273e0fa36fb1185a32 288 Pfam PF03466 LysR substrate binding domain 88 275 1.2E-16 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 PANTHER PTHR30204:SF6 1 103 4.6E-21 T 23-04-2016 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 Gene3D G3DSA:1.10.1660.10 57 108 1.9E-7 T 23-04-2016 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 SUPERFAMILY SSF46955 1 104 1.06E-26 T 23-04-2016 IPR009061 Putative DNA-binding domain THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 4.2E-5 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 4.2E-5 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 4.2E-5 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 SMART SM00422 2 71 2.8E-20 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 PANTHER PTHR30204 1 103 4.6E-21 T 23-04-2016 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 Gene3D G3DSA:1.10.1660.10 1 56 2.7E-24 T 23-04-2016 THIMO_RS02220 37b9018399caf6f7e66f767392a18241 180 Pfam PF13411 MerR HTH family regulatory protein 3 70 1.2E-15 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 331 1.3E-113 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 PANTHER PTHR30100 3 340 1.2E-142 T 23-04-2016 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 Pfam PF02504 Fatty acid synthesis protein 6 324 4.2E-108 T 23-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 Gene3D G3DSA:3.40.718.10 5 331 1.1E-136 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 SUPERFAMILY SSF53659 5 332 5.76E-108 T 23-04-2016 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 338 147.548 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 PIRSF PIRSF002465 3 336 2.1E-130 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 THIMO_RS11395 a145dfd82cd620393fdc47b89fda7545 343 PANTHER PTHR30100:SF1 3 340 1.2E-142 T 23-04-2016 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 Pfam PF08334 Type II secretion system (T2SS), protein G 33 140 2.2E-43 T 23-04-2016 IPR013545 Type II secretion system protein G THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 7 29 3.2E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 PANTHER PTHR30093 2 141 2.5E-48 T 23-04-2016 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 6.5E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 Gene3D G3DSA:3.30.700.10 11 97 1.6E-7 T 23-04-2016 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 3.3E-14 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 3.3E-14 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 PANTHER PTHR30093:SF9 2 141 2.5E-48 T 23-04-2016 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 SUPERFAMILY SSF54523 38 141 1.1E-36 T 23-04-2016 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 9 141 3.0E-51 T 23-04-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 THIMO_RS00205 c02d33ccaba68d98f0ebd6f3f1971144 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Pfam PF00994 Probable molybdopterin binding domain 192 331 1.3E-24 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:2.40.340.10 346 422 2.9E-14 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 SUPERFAMILY SSF53218 189 337 3.66E-38 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 SUPERFAMILY SSF63882 16 188 3.92E-50 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:3.90.105.10 143 174 1.5E-18 T 23-04-2016 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 265 298 - T 23-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:2.170.190.11 62 142 5.9E-29 T 23-04-2016 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 SMART SM00852 192 333 5.2E-36 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Pfam PF03454 MoeA C-terminal region (domain IV) 350 421 6.8E-16 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 SUPERFAMILY SSF63867 344 423 8.76E-16 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 PANTHER PTHR10192 11 425 2.1E-151 T 23-04-2016 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 PANTHER PTHR10192:SF17 11 425 2.1E-151 T 23-04-2016 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Pfam PF03453 MoeA N-terminal region (domain I and II) 21 179 1.5E-33 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS08030 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:3.40.980.10 175 340 7.2E-56 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS15025 3fcb454b743fab0620ec033d128ba364 176 PANTHER PTHR36699 1 176 8.0E-49 T 23-04-2016 THIMO_RS15025 3fcb454b743fab0620ec033d128ba364 176 Pfam PF03734 L,D-transpeptidase catalytic domain 40 174 4.1E-16 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS15025 3fcb454b743fab0620ec033d128ba364 176 SUPERFAMILY SSF141523 39 174 1.44E-23 T 23-04-2016 THIMO_RS15025 3fcb454b743fab0620ec033d128ba364 176 Gene3D G3DSA:2.40.440.10 38 175 1.2E-18 T 23-04-2016 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 SUPERFAMILY SSF56194 189 292 2.22E-35 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 296 86.23 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 195 290 1.6E-29 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 16 292 3.2E-54 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 Gene3D G3DSA:3.90.78.10 221 293 3.9E-32 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 SUPERFAMILY SSF56176 15 201 3.02E-36 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 PANTHER PTHR21071 1 296 1.6E-103 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 Gene3D G3DSA:3.30.43.10 14 75 1.3E-18 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 PANTHER PTHR21071:SF4 1 296 1.6E-103 T 23-04-2016 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 Pfam PF01565 FAD binding domain 30 157 2.3E-18 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 THIMO_RS14770 4da51ac371894966bf1b40e50ce1a799 296 Gene3D G3DSA:3.30.465.10 91 220 2.4E-34 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS14835 7fb92697a87337e0bdf13d9a604a402d 207 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 22 193 5.0E-37 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS14835 7fb92697a87337e0bdf13d9a604a402d 207 PIRSF PIRSF000709 11 195 5.5E-6 T 23-04-2016 THIMO_RS14835 7fb92697a87337e0bdf13d9a604a402d 207 Gene3D G3DSA:3.40.50.1240 20 193 2.0E-42 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS14835 7fb92697a87337e0bdf13d9a604a402d 207 SMART SM00855 19 164 3.8E-9 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS14835 7fb92697a87337e0bdf13d9a604a402d 207 SUPERFAMILY SSF53254 20 204 6.85E-40 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS14835 7fb92697a87337e0bdf13d9a604a402d 207 PANTHER PTHR23029 22 207 2.9E-25 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 525 8.3E-34 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 618 637 8.3E-34 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 333 347 8.3E-34 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 151 165 8.3E-34 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 536 546 8.3E-34 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 653 8.3E-34 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SMART SM00831 7 61 2.0E-4 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:2.70.150.10 7 40 1.9E-36 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:2.70.150.10 99 211 1.9E-36 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:3.40.1110.10 324 520 1.4E-30 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00122 E1-E2 ATPase 73 324 2.4E-48 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 335 341 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81660 340 518 1.28E-22 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 581 699 5.8E-28 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 73 168 8.1E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00702 haloacid dehalogenase-like hydrolase 330 632 1.1E-16 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81665 214 327 1.05E-95 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81665 667 886 1.05E-95 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81665 7 104 1.05E-95 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81653 107 211 8.89E-26 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:1.20.1110.10 587 882 1.5E-80 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:1.20.1110.10 41 98 1.5E-80 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PANTHER PTHR24093 771 888 5.8E-270 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PANTHER PTHR24093 7 753 5.8E-270 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PANTHER PTHR24093:SF283 771 888 5.8E-270 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PANTHER PTHR24093:SF283 7 753 5.8E-270 T 23-04-2016 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00690 Cation transporter/ATPase, N-terminus 7 55 1.1E-11 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00689 Cation transporting ATPase, C-terminus 702 881 8.2E-37 T 23-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF56784 331 351 6.87E-46 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF56784 473 720 6.87E-46 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 476 494 4.3E-15 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 618 634 4.3E-15 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 649 674 4.3E-15 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS03330 42c37e08cc7e6825332311b4af0eb7ec 894 TIGRFAM TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 7 879 1.0E-184 T 23-04-2016 IPR006408 P-type ATPase, subfamily IIB GO:0005388|GO:0005524|GO:0016020|GO:0070588 THIMO_RS07390 c03f6bf10220f0bff83e2c71e33a5220 408 PANTHER PTHR32468:SF4 1 406 3.6E-80 T 23-04-2016 THIMO_RS07390 c03f6bf10220f0bff83e2c71e33a5220 408 PANTHER PTHR32468 1 406 3.6E-80 T 23-04-2016 THIMO_RS07390 c03f6bf10220f0bff83e2c71e33a5220 408 Pfam PF00999 Sodium/hydrogen exchanger family 8 403 2.8E-62 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 SUPERFAMILY SSF53756 3 386 1.95E-67 T 23-04-2016 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 Gene3D G3DSA:3.40.50.2000 3 133 1.9E-16 T 23-04-2016 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 PANTHER PTHR11926:SF16 1 368 3.7E-35 T 23-04-2016 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 Gene3D G3DSA:3.40.50.2000 225 369 4.7E-27 T 23-04-2016 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 228 361 7.6E-13 T 23-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 PANTHER PTHR11926 1 368 3.7E-35 T 23-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 12 386 7.4E-53 T 23-04-2016 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 THIMO_RS06890 9135b999872b1b49214123575cb1a011 391 ProSitePatterns PS00221 MIP family signature. 16 24 - T 23-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 199 3.9E-11 T 23-04-2016 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 215 229 3.9E-11 T 23-04-2016 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 291 303 3.9E-11 T 23-04-2016 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 Pfam PF12161 HsdM N-terminal domain 9 147 8.3E-20 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 294 300 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 Gene3D G3DSA:3.40.50.150 185 447 7.0E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 SUPERFAMILY SSF53335 9 46 6.1E-111 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 SUPERFAMILY SSF53335 83 560 6.1E-111 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 PANTHER PTHR30195 108 720 1.7E-111 T 23-04-2016 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 Pfam PF02384 N-6 DNA Methylase 163 467 1.0E-53 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 THIMO_RS16420 f11021cb51498f8f57817fafb0837b59 725 PANTHER PTHR30195:SF10 108 720 1.7E-111 T 23-04-2016 THIMO_RS01940 1f4eabe77ed868fdee7126df6605c06f 305 PANTHER PTHR30606:SF5 4 305 2.3E-81 T 23-04-2016 THIMO_RS01940 1f4eabe77ed868fdee7126df6605c06f 305 PANTHER PTHR30606 4 305 2.3E-81 T 23-04-2016 THIMO_RS01940 1f4eabe77ed868fdee7126df6605c06f 305 PIRSF PIRSF026649 2 299 1.7E-83 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 THIMO_RS01940 1f4eabe77ed868fdee7126df6605c06f 305 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 290 1.9E-54 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 THIMO_RS11325 f4b4f14e2ccdc5e5a288a31384130a98 146 PANTHER PTHR10642 1 141 2.1E-60 T 23-04-2016 THIMO_RS11325 f4b4f14e2ccdc5e5a288a31384130a98 146 Gene3D G3DSA:3.30.420.10 3 141 2.9E-63 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS11325 f4b4f14e2ccdc5e5a288a31384130a98 146 SUPERFAMILY SSF53098 3 141 2.4E-59 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS11325 f4b4f14e2ccdc5e5a288a31384130a98 146 Pfam PF00075 RNase H 5 140 1.5E-50 T 23-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 THIMO_RS11325 f4b4f14e2ccdc5e5a288a31384130a98 146 Hamap MF_00042 Ribonuclease H [rnhA]. 2 146 34.431 T 23-04-2016 IPR022892 Ribonuclease H GO:0004523 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 2.6E-158 T 23-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 Gene3D G3DSA:3.30.70.360 188 286 9.8E-28 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 PANTHER PTHR11014 5 376 4.5E-82 T 23-04-2016 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 SUPERFAMILY SSF53187 292 374 2.19E-66 T 23-04-2016 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 SUPERFAMILY SSF53187 3 178 2.19E-66 T 23-04-2016 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 51.805 T 23-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 Pfam PF07687 Peptidase dimerisation domain 175 279 3.6E-21 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 135 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 SUPERFAMILY SSF55031 179 286 6.58E-25 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 Pfam PF01546 Peptidase family M20/M25/M40 62 371 1.3E-45 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 Gene3D G3DSA:3.40.630.10 316 374 1.2E-76 T 23-04-2016 THIMO_RS09655 2bc47f18f30944672b64b351e9ba0344 376 Gene3D G3DSA:3.40.630.10 2 187 1.2E-76 T 23-04-2016 THIMO_RS15110 1069112df345db158cd9fb785371460d 357 PANTHER PTHR24220:SF282 20 244 2.1E-72 T 23-04-2016 THIMO_RS15110 1069112df345db158cd9fb785371460d 357 SMART SM00382 26 211 1.3E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS15110 1069112df345db158cd9fb785371460d 357 Gene3D G3DSA:3.40.50.300 20 232 1.3E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15110 1069112df345db158cd9fb785371460d 357 PANTHER PTHR24220 20 244 2.1E-72 T 23-04-2016 THIMO_RS15110 1069112df345db158cd9fb785371460d 357 SUPERFAMILY SSF52540 16 241 2.25E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15110 1069112df345db158cd9fb785371460d 357 Pfam PF00005 ABC transporter 20 161 1.3E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS00225 7c04fbcf297bf64ec9584ef989155b8c 338 Gene3D G3DSA:1.10.40.60 150 240 5.2E-24 T 23-04-2016 THIMO_RS00225 7c04fbcf297bf64ec9584ef989155b8c 338 PANTHER PTHR38831 44 299 6.6E-25 T 23-04-2016 THIMO_RS00225 7c04fbcf297bf64ec9584ef989155b8c 338 SUPERFAMILY SSF158544 148 241 6.54E-24 T 23-04-2016 THIMO_RS00225 7c04fbcf297bf64ec9584ef989155b8c 338 PANTHER PTHR38831:SF1 44 299 6.6E-25 T 23-04-2016 THIMO_RS00225 7c04fbcf297bf64ec9584ef989155b8c 338 Pfam PF03934 Type II secretion system (T2SS), protein K 68 264 3.1E-32 T 23-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 SUPERFAMILY SSF51206 10 141 2.62E-15 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 Gene3D G3DSA:2.60.120.10 6 143 3.8E-9 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF03445 Putative nucleotidyltransferase DUF294 299 435 1.2E-49 T 23-04-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 Gene3D G3DSA:3.10.580.10 153 271 1.2E-27 T 23-04-2016 THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 472 615 5.2E-47 T 23-04-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 SMART SM00116 227 274 1.5 T 23-04-2016 IPR000644 CBS domain THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 SMART SM00116 163 210 3.9E-8 T 23-04-2016 IPR000644 CBS domain THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 PANTHER PTHR11911 57 340 1.1E-23 T 23-04-2016 THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF00571 CBS domain 164 207 7.3E-10 T 23-04-2016 IPR000644 CBS domain THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF00571 CBS domain 220 273 5.7E-6 T 23-04-2016 IPR000644 CBS domain THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 SUPERFAMILY SSF54631 154 272 2.4E-28 T 23-04-2016 THIMO_RS06190 0955dcbb149c686dbabc8ccd9c67a0a5 621 PANTHER PTHR11911:SF110 57 340 1.1E-23 T 23-04-2016 THIMO_RS09275 2d78c0d5b86ea7a86e1c5914dd571c5d 400 PANTHER PTHR12526:SF363 1 385 6.2E-76 T 23-04-2016 THIMO_RS09275 2d78c0d5b86ea7a86e1c5914dd571c5d 400 PANTHER PTHR12526 1 385 6.2E-76 T 23-04-2016 THIMO_RS09275 2d78c0d5b86ea7a86e1c5914dd571c5d 400 SUPERFAMILY SSF53756 2 381 7.75E-87 T 23-04-2016 THIMO_RS09275 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Pfam PF00534 Glycosyl transferases group 1 196 360 3.7E-37 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS09275 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Pfam PF13439 Glycosyltransferase Family 4 14 184 8.0E-32 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS09275 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Gene3D G3DSA:3.40.50.2000 174 359 7.4E-32 T 23-04-2016 THIMO_RS03410 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 Pfam PF00830 Ribosomal L28 family 3 62 1.5E-26 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 THIMO_RS03410 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 Gene3D G3DSA:2.30.170.40 2 77 5.9E-36 T 23-04-2016 THIMO_RS03410 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 PANTHER PTHR13528 1 68 1.2E-31 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 THIMO_RS03410 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 SUPERFAMILY SSF143800 2 77 2.35E-30 T 23-04-2016 THIMO_RS03410 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.747 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03410 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.2E-27 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 1 161 16.699 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 Pfam PF01252 Signal peptidase (SPase) II 9 155 1.6E-38 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 PANTHER PTHR33695 1 161 8.9E-52 T 23-04-2016 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 TIGRFAM TIGR00077 lspA: signal peptidase II 3 158 1.1E-37 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 136 152 3.5E-18 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 94 109 3.5E-18 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 46 54 3.5E-18 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 PANTHER PTHR33695:SF1 1 161 8.9E-52 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS05435 ab83dd8eef79cd6d0d4b9518122488f8 162 ProSitePatterns PS00855 Signal peptidases II signature. 97 109 - T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 Pfam PF01292 Prokaryotic cytochrome b561 16 221 7.1E-32 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 SUPERFAMILY SSF81342 11 226 9.42E-44 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 56 80 3.5E-50 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 18 41 3.5E-50 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 213 226 3.5E-50 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 135 154 3.5E-50 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 182 204 3.5E-50 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PANTHER PTHR30485 13 230 2.3E-93 T 23-04-2016 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 Gene3D G3DSA:1.20.950.20 11 222 6.8E-29 T 23-04-2016 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 PANTHER PTHR30485:SF0 13 230 2.3E-93 T 23-04-2016 THIMO_RS15395 3c7d397ba8a2dd796edd3101d15cc805 230 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 14 226 1.1E-72 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 6.1E-60 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 SUPERFAMILY SSF52518 371 568 2.47E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 328 4.4E-45 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 542 1.8E-48 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 SUPERFAMILY SSF52467 188 361 2.89E-66 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 3 564 9.6E-260 T 23-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 Gene3D G3DSA:3.40.50.970 3 176 4.1E-76 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 PANTHER PTHR18968:SF116 2 570 0.0 T 23-04-2016 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 PANTHER PTHR18968 2 570 0.0 T 23-04-2016 THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 SUPERFAMILY SSF52518 3 177 3.28E-66 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 Gene3D G3DSA:3.40.50.1220 189 356 1.3E-66 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain THIMO_RS01830 70acc1b30012231ebf109234e4518d20 572 Gene3D G3DSA:3.40.50.970 357 557 5.9E-73 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS08535 ebdd20809618c221efb01be049996417 89 PANTHER PTHR34702:SF1 6 89 1.6E-18 T 23-04-2016 THIMO_RS08535 ebdd20809618c221efb01be049996417 89 PANTHER PTHR34702 6 89 1.6E-18 T 23-04-2016 THIMO_RS08535 ebdd20809618c221efb01be049996417 89 PIRSF PIRSF028784 1 89 1.6E-26 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 THIMO_RS08535 ebdd20809618c221efb01be049996417 89 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 32 82 4.8E-21 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 THIMO_RS08020 1b2f2b3c9264f91c24736b5c463c3a46 124 Pfam PF01219 Prokaryotic diacylglycerol kinase 19 119 5.9E-33 T 23-04-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 THIMO_RS08020 1b2f2b3c9264f91c24736b5c463c3a46 124 PANTHER PTHR34299 1 124 1.6E-33 T 23-04-2016 THIMO_RS08020 1b2f2b3c9264f91c24736b5c463c3a46 124 PANTHER PTHR34299:SF1 1 124 1.6E-33 T 23-04-2016 THIMO_RS08020 1b2f2b3c9264f91c24736b5c463c3a46 124 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 72 83 - T 23-04-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 THIMO_RS08020 1b2f2b3c9264f91c24736b5c463c3a46 124 Gene3D G3DSA:1.10.3830.10 7 123 3.3E-41 T 23-04-2016 THIMO_RS16265 00124501a3fa704e89239e9778e735ba 296 Hamap MF_00188 Protease HtpX [htpX]. 1 294 25.615 T 23-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 THIMO_RS16265 00124501a3fa704e89239e9778e735ba 296 Gene3D G3DSA:3.30.2010.10 77 164 1.4E-31 T 23-04-2016 THIMO_RS16265 00124501a3fa704e89239e9778e735ba 296 PANTHER PTHR10120:SF19 1 293 1.4E-90 T 23-04-2016 THIMO_RS16265 00124501a3fa704e89239e9778e735ba 296 Pfam PF01435 Peptidase family M48 83 293 2.6E-41 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 THIMO_RS16265 00124501a3fa704e89239e9778e735ba 296 PANTHER PTHR10120 1 293 1.4E-90 T 23-04-2016 THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 SUPERFAMILY SSF52540 28 238 1.73E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 Gene3D G3DSA:3.40.50.300 27 265 1.8E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 PANTHER PTHR24220:SF483 28 270 3.4E-83 T 23-04-2016 THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 SMART SM00382 51 240 1.0E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 Pfam PF00005 ABC transporter 43 191 4.1E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 PANTHER PTHR24220 28 270 3.4E-83 T 23-04-2016 THIMO_RS05275 b842f63f7736c62cb4e0442b3137c244 277 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 181 1.5E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 Gene3D G3DSA:3.40.50.1000 74 217 2.8E-40 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 SUPERFAMILY SSF56784 1 213 6.4E-58 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 PANTHER PTHR18901 1 222 6.0E-52 T 23-04-2016 THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 PANTHER PTHR18901:SF40 1 222 6.0E-52 T 23-04-2016 THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 184 5.9E-31 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 Gene3D G3DSA:1.10.150.240 21 73 1.6E-10 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 THIMO_RS02515 831a4c4a381a607009c9318d6a86db80 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 178 5.9E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 551 4.9E-206 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 PANTHER PTHR30075 5 693 0.0 T 23-04-2016 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 691 24.579 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 4 692 4.8E-233 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 Gene3D G3DSA:1.10.730.10 583 675 3.8E-4 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 SMART SM00836 586 691 0.0047 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 SUPERFAMILY SSF109604 343 491 9.94E-17 T 23-04-2016 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 51 63 8.6E-34 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 8.6E-34 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 395 414 8.6E-34 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 247 262 8.6E-34 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 319 335 8.6E-34 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 THIMO_RS17510 767d17f0e4e21dec5a2be530040c5b87 693 Pfam PF05746 DALR anticodon binding domain 583 678 2.5E-6 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 SUPERFAMILY SSF111369 51 223 1.96E-14 T 23-04-2016 THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 Gene3D G3DSA:2.40.50.100 182 210 4.1E-11 T 23-04-2016 THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 Gene3D G3DSA:2.40.50.100 65 93 4.1E-11 T 23-04-2016 THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 282 2.2E-10 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 374 1.1E-43 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 Pfam PF00529 HlyD membrane-fusion protein of T1SS 27 276 9.6E-7 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS06870 473dee168b6049a89420f4a72f6f6956 384 PANTHER PTHR30469 9 383 8.4E-45 T 23-04-2016 THIMO_RS04635 f340ac6542f9d3c91be4ba6515340c31 207 PANTHER PTHR17490:SF7 1 201 6.3E-92 T 23-04-2016 THIMO_RS04635 f340ac6542f9d3c91be4ba6515340c31 207 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 7.9E-65 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 THIMO_RS04635 f340ac6542f9d3c91be4ba6515340c31 207 Pfam PF01300 Telomere recombination 23 198 7.5E-46 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 THIMO_RS04635 f340ac6542f9d3c91be4ba6515340c31 207 SUPERFAMILY SSF55821 1 203 4.58E-65 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS04635 f340ac6542f9d3c91be4ba6515340c31 207 Gene3D G3DSA:3.90.870.10 2 202 3.2E-64 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS04635 f340ac6542f9d3c91be4ba6515340c31 207 PANTHER PTHR17490 1 201 6.3E-92 T 23-04-2016 THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 SUPERFAMILY SSF52833 47 182 3.28E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 13 179 5.8E-50 T 23-04-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 PANTHER PTHR10681:SF107 1 185 5.2E-52 T 23-04-2016 THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 PANTHER PTHR10681 1 185 5.2E-52 T 23-04-2016 THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 Pfam PF08534 Redoxin 43 169 4.7E-22 T 23-04-2016 IPR013740 Redoxin GO:0016491 THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 THIMO_RS06475 4e47bdf88d05384b0575f3d69030b4c4 186 Gene3D G3DSA:3.40.30.10 12 183 2.5E-42 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 PANTHER PTHR22773 37 465 1.2E-146 T 23-04-2016 THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 PANTHER PTHR22773:SF56 37 465 1.2E-146 T 23-04-2016 THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 Pfam PF00361 Proton-conducting membrane transporter 104 402 1.5E-52 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 218 242 7.2E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 109 128 7.2E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 363 389 7.2E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS15235 6056541410426ac5fd1dbcda682969b0 471 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 311 330 7.2E-11 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Pfam PF04679 ATP dependent DNA ligase C terminal region 400 492 3.2E-12 T 23-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 210 218 - T 23-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Pfam PF01068 ATP dependent DNA ligase domain 188 381 1.1E-44 T 23-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:1.10.3260.10 72 184 4.2E-17 T 23-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 PANTHER PTHR10459:SF47 53 512 2.3E-166 T 23-04-2016 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Pfam PF04675 DNA ligase N terminus 72 140 1.1E-6 T 23-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:3.30.470.30 215 329 7.7E-29 T 23-04-2016 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 PANTHER PTHR10459 53 512 2.3E-166 T 23-04-2016 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 SUPERFAMILY SSF56091 182 381 9.11E-49 T 23-04-2016 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:2.40.50.140 384 510 6.0E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 TIGRFAM TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1) 51 508 3.4E-87 T 23-04-2016 IPR000977 DNA ligase, ATP-dependent GO:0003910|GO:0005524|GO:0006281|GO:0006310|GO:0071897 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 ProSitePatterns PS00333 ATP-dependent DNA ligase signature 2. 357 381 - T 23-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 SUPERFAMILY SSF50249 384 510 4.11E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 SUPERFAMILY SSF117018 5 204 3.01E-27 T 23-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:3.30.1490.70 338 382 5.6E-19 T 23-04-2016 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:3.30.1490.70 185 214 5.6E-19 T 23-04-2016 THIMO_RS10385 fdf1264123eb8b956a2967fe914fb6f5 514 Hamap MF_00407 DNA ligase [lig]. 1 508 27.081 T 23-04-2016 IPR022865 DNA ligase, ATP-dependent, bacterial/archaeal GO:0003910 THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 31 112 9.0E-9 T 23-04-2016 IPR029464 Type I restriction enzyme R protein, N-terminal domain THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 PANTHER PTHR30195 1 566 1.4E-54 T 23-04-2016 THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 PANTHER PTHR30195:SF3 1 566 1.4E-54 T 23-04-2016 THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 SUPERFAMILY SSF52540 401 558 4.02E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 SUPERFAMILY SSF52540 300 341 4.02E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 Pfam PF04851 Type III restriction enzyme, res subunit 165 344 2.2E-41 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 SUPERFAMILY SSF52540 152 383 2.76E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 Gene3D G3DSA:3.40.50.300 162 247 2.7E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 Gene3D G3DSA:3.40.50.300 291 350 2.7E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 SMART SM00487 162 379 7.4E-22 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 Pfam PF08463 EcoEI R protein C-terminal 660 814 2.8E-25 T 23-04-2016 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 THIMO_RS09500 fa3d2ef359513154318365cd4fa668f7 818 Gene3D G3DSA:3.40.50.300 429 555 3.3E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 PANTHER PTHR35272 1 247 1.5E-66 T 23-04-2016 THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 Gene3D G3DSA:3.40.30.10 117 245 8.5E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 SUPERFAMILY SSF52833 101 244 5.86E-36 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 Gene3D G3DSA:3.10.450.70 32 91 1.1E-18 T 23-04-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 Pfam PF10411 Disulfide bond isomerase protein N-terminus 35 88 7.7E-19 T 23-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 SUPERFAMILY SSF54423 32 87 3.92E-12 T 23-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 Pfam PF13098 Thioredoxin-like domain 119 241 1.1E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07090 e6bb070c3c2fa2715dde933c5257fc12 247 PANTHER PTHR35272:SF3 1 247 1.5E-66 T 23-04-2016 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 SMART SM00382 170 355 1.1E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 4.5E-214 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-16 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 SMART SM00357 52 118 2.3E-17 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 SUPERFAMILY SSF68912 1 46 5.1E-12 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 PANTHER PTHR15184:SF34 21 417 3.6E-193 T 23-04-2016 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 418 249.534 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 SUPERFAMILY SSF50249 48 125 1.88E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 SUPERFAMILY SSF52540 91 371 1.77E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 SMART SM00959 5 47 5.9E-18 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 PANTHER PTHR15184 21 417 3.6E-193 T 23-04-2016 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 9.8E-31 T 23-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Gene3D G3DSA:3.40.50.300 132 417 7.2E-107 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Gene3D G3DSA:1.10.720.10 1 47 4.5E-20 T 23-04-2016 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.1E-22 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS09965 8c8d1ab04410225c9b884522c8164549 418 Gene3D G3DSA:2.40.50.140 49 116 6.6E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS11360 a521603b2667dd5eeabf022b0e0108ed 347 Gene3D G3DSA:3.30.160.60 305 334 2.3E-17 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 THIMO_RS11360 a521603b2667dd5eeabf022b0e0108ed 347 PANTHER PTHR30518 8 343 4.8E-91 T 23-04-2016 THIMO_RS11360 a521603b2667dd5eeabf022b0e0108ed 347 Pfam PF02618 YceG-like family 46 330 2.5E-83 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like THIMO_RS11360 a521603b2667dd5eeabf022b0e0108ed 347 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 10 333 4.2E-83 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like THIMO_RS11360 a521603b2667dd5eeabf022b0e0108ed 347 PANTHER PTHR30518:SF2 8 343 4.8E-91 T 23-04-2016 THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 Gene3D G3DSA:1.10.510.10 280 336 4.4E-6 T 23-04-2016 THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 8 441 2.4E-178 T 23-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 Pfam PF03109 ABC1 family 113 231 5.6E-35 T 23-04-2016 IPR004147 UbiB domain THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 PANTHER PTHR10566 6 549 1.7E-251 T 23-04-2016 THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 PANTHER PTHR10566:SF79 6 549 1.7E-251 T 23-04-2016 THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 SUPERFAMILY SSF56112 95 158 1.95E-49 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 SUPERFAMILY SSF56112 193 433 1.95E-49 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS00250 3a3fc83f73acfe2c2b71df718c2de546 553 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 4 545 51.6 T 23-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 PANTHER PTHR22762:SF7 32 103 1.5E-233 T 23-04-2016 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 PANTHER PTHR22762:SF7 119 817 1.5E-233 T 23-04-2016 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 SUPERFAMILY SSF51445 249 603 2.92E-89 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 Pfam PF17137 Domain of unknown function (DUF5110) 704 774 1.2E-14 T 23-04-2016 IPR033403 Domain of unknown function DUF5110 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 SUPERFAMILY SSF51011 605 685 1.15E-17 T 23-04-2016 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 Pfam PF13802 Galactose mutarotase-like 150 218 7.7E-16 T 23-04-2016 IPR025887 Glycoside hydrolase family 31, N-terminal domain THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 Pfam PF01055 Glycosyl hydrolases family 31 239 689 2.6E-146 T 23-04-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 PANTHER PTHR22762 32 103 1.5E-233 T 23-04-2016 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 PANTHER PTHR22762 119 817 1.5E-233 T 23-04-2016 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 SUPERFAMILY SSF74650 12 246 2.89E-41 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 ProSitePatterns PS00129 Glycosyl hydrolases family 31 active site. 411 418 - T 23-04-2016 IPR030458 Glycosyl hydrolases family 31, active site THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 Gene3D G3DSA:3.20.20.70 384 511 1.4E-5 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS08650 4e88be8cd2521bcde3e46afbb643ecf1 817 Gene3D G3DSA:3.20.20.70 278 345 1.4E-5 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 PANTHER PTHR33712:SF4 19 479 7.5E-294 T 23-04-2016 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 SUPERFAMILY SSF53807 7 479 8.57E-166 T 23-04-2016 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 12 479 2.9E-260 T 23-04-2016 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 Gene3D G3DSA:3.40.50.1980 11 206 2.5E-68 T 23-04-2016 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 62 467 5.3E-110 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 PANTHER PTHR33712 19 479 7.5E-294 T 23-04-2016 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 Gene3D G3DSA:3.40.50.1980 345 483 5.2E-67 T 23-04-2016 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 152 166 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 81 88 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 27 473 2.4E-197 T 23-04-2016 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 THIMO_RS15430 4bbe52b243438120aff516aba4458f34 494 Gene3D G3DSA:3.40.50.1980 210 318 7.7E-50 T 23-04-2016 THIMO_RS11815 7aaf84b4868bf5d08918ef91ad5ba138 453 Pfam PF10011 Predicted membrane protein (DUF2254) 13 387 3.6E-121 T 23-04-2016 IPR018723 Protein of unknown function DUF2254, membrane THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.5E-24 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.252 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 44 4.0E-9 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PANTHER PTHR21109 1 69 4.0E-24 T 23-04-2016 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 Pfam PF01165 Ribosomal protein S21 3 56 9.4E-22 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.6E-16 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.6E-16 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.6E-16 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS02645 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.6E-16 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 THIMO_RS11870 e818764de69dda8463d8d1eba9d8f178 197 Gene3D G3DSA:2.60.40.1120 118 184 7.7E-6 T 23-04-2016 IPR014766 Carboxypeptidase, regulatory domain THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 SUPERFAMILY SSF54523 9 121 3.57E-23 T 23-04-2016 THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 Gene3D G3DSA:3.30.700.10 9 103 5.6E-17 T 23-04-2016 THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 1.2E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 26 3.9E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 30 127 6.2E-13 T 23-04-2016 IPR031982 Type IV minor pilin ComP THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 PANTHER PTHR30093 1 86 6.0E-20 T 23-04-2016 THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.6E-8 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 THIMO_RS03855 e235d42afd29fc9ef5982a97f95c9214 132 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 1.6E-8 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 THIMO_RS01520 2f1682da4c6195cf9bac6703e98c468b 158 Pfam PF09701 CRISPR-associated protein (Cas_Cmr5) 35 143 6.9E-11 T 23-04-2016 IPR010160 CRISPR-associated protein, Cmr5 THIMO_RS01520 2f1682da4c6195cf9bac6703e98c468b 158 TIGRFAM TIGR01881 cas_Cmr5: CRISPR type III-B/RAMP module-associated protein Cmr5 35 143 7.7E-9 T 23-04-2016 IPR010160 CRISPR-associated protein, Cmr5 THIMO_RS01520 2f1682da4c6195cf9bac6703e98c468b 158 SUPERFAMILY SSF158568 36 143 3.79E-8 T 23-04-2016 IPR023101 AF1862-like domain THIMO_RS01520 2f1682da4c6195cf9bac6703e98c468b 158 Gene3D G3DSA:1.10.520.30 36 143 9.0E-11 T 23-04-2016 IPR023101 AF1862-like domain THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 41 58 1.5E-34 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 62 72 1.5E-34 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 9 21 1.5E-34 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 73 89 1.5E-34 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 21 32 1.5E-34 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 Pfam PF01750 Hydrogenase maturation protease 26 153 9.7E-41 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 SUPERFAMILY SSF53163 8 167 1.49E-47 T 23-04-2016 IPR023430 Peptidase HybD-like domain THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PANTHER PTHR30302 4 171 7.0E-64 T 23-04-2016 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 Gene3D G3DSA:3.40.50.1450 8 167 1.0E-52 T 23-04-2016 IPR023430 Peptidase HybD-like domain THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 PANTHER PTHR30302:SF1 4 171 7.0E-64 T 23-04-2016 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 10 155 2.8E-46 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 THIMO_RS15400 d3bbf620dbff57529719c6d17b706f58 237 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 9 160 3.3E-64 T 23-04-2016 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 146 305 2.6E-46 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 PANTHER PTHR10799:SF686 104 305 2.0E-29 T 23-04-2016 THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 Gene3D G3DSA:3.30.70.270 148 306 6.0E-54 T 23-04-2016 THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 SMART SM00267 136 305 2.1E-63 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 SUPERFAMILY SSF55073 152 305 4.32E-48 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 Pfam PF00990 Diguanylate cyclase, GGDEF domain 147 301 1.4E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS13420 7bda637d2a90c1e51f16dcc5a4a73c93 316 PANTHER PTHR10799 104 305 2.0E-29 T 23-04-2016 THIMO_RS12855 fcdff0acb590473cb4cb581ca1bef482 317 Pfam PF03747 ADP-ribosylglycohydrolase 13 274 1.1E-56 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 THIMO_RS12855 fcdff0acb590473cb4cb581ca1bef482 317 SUPERFAMILY SSF101478 11 282 2.75E-66 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 THIMO_RS12855 fcdff0acb590473cb4cb581ca1bef482 317 PANTHER PTHR16222 4 285 9.5E-51 T 23-04-2016 THIMO_RS12855 fcdff0acb590473cb4cb581ca1bef482 317 PANTHER PTHR16222:SF12 4 285 9.5E-51 T 23-04-2016 THIMO_RS18025 b6ce4f19a4a83d7751f1cabacfb560d1 156 Pfam PF13676 TIR domain 14 112 9.4E-16 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18025 b6ce4f19a4a83d7751f1cabacfb560d1 156 Gene3D G3DSA:3.40.50.10140 14 116 1.3E-6 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18025 b6ce4f19a4a83d7751f1cabacfb560d1 156 SUPERFAMILY SSF52200 6 113 1.01E-12 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS09770 cd899ca724f13996a93a43f25dc9c80f 265 Gene3D G3DSA:3.20.20.70 19 240 2.3E-54 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS09770 cd899ca724f13996a93a43f25dc9c80f 265 Pfam PF05690 Thiazole biosynthesis protein ThiG 13 259 1.5E-109 T 23-04-2016 THIMO_RS09770 cd899ca724f13996a93a43f25dc9c80f 265 PANTHER PTHR34266:SF2 5 265 2.0E-148 T 23-04-2016 THIMO_RS09770 cd899ca724f13996a93a43f25dc9c80f 265 Hamap MF_00443 Thiazole synthase [thiG]. 10 265 42.529 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 THIMO_RS09770 cd899ca724f13996a93a43f25dc9c80f 265 PANTHER PTHR34266 5 265 2.0E-148 T 23-04-2016 THIMO_RS09770 cd899ca724f13996a93a43f25dc9c80f 265 SUPERFAMILY SSF110399 9 250 4.19E-87 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 4 110 5.0E-50 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 PIRSF PIRSF006223 3 110 1.3E-43 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 Gene3D G3DSA:3.30.1420.10 3 39 7.1E-13 T 23-04-2016 THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 SUPERFAMILY SSF69721 3 110 7.32E-42 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 Pfam PF04358 DsrC like protein 5 110 3.0E-46 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 PANTHER PTHR37010:SF1 3 110 2.5E-49 T 23-04-2016 THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 PANTHER PTHR37010 3 110 2.5E-49 T 23-04-2016 THIMO_RS00715 5a9c37aef86c896938c2fa4b488e93a1 110 Gene3D G3DSA:1.10.10.370 40 110 5.2E-37 T 23-04-2016 THIMO_RS15250 02038e728d5d7d0e31208c9424803c9d 149 Pfam PF02643 Uncharacterized ACR, COG1430 39 139 8.2E-33 T 23-04-2016 IPR003795 Protein of unknown function DUF192 THIMO_RS15250 02038e728d5d7d0e31208c9424803c9d 149 PANTHER PTHR37953:SF1 29 148 4.1E-34 T 23-04-2016 THIMO_RS15250 02038e728d5d7d0e31208c9424803c9d 149 PANTHER PTHR37953 29 148 4.1E-34 T 23-04-2016 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 SUPERFAMILY SSF51905 4 108 1.64E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 SUPERFAMILY SSF51905 242 316 1.64E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 Gene3D G3DSA:3.50.50.60 2 95 8.2E-16 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 PANTHER PTHR10632:SF7 3 376 3.2E-51 T 23-04-2016 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 Gene3D G3DSA:3.50.50.60 178 315 2.3E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 PANTHER PTHR10632 3 376 3.2E-51 T 23-04-2016 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 293 5.7E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 Gene3D G3DSA:3.50.50.60 96 139 2.1E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07475 d95661944fc0f5a535b2fa1a297a89c7 376 SUPERFAMILY SSF51905 115 246 1.75E-5 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 SUPERFAMILY SSF46626 36 123 1.89E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 Pfam PF00034 Cytochrome c 45 122 2.7E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 Gene3D G3DSA:1.10.760.10 135 214 1.1E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 SUPERFAMILY SSF46626 133 211 1.4E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 136 186 1.7E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 Gene3D G3DSA:1.10.760.10 42 124 1.0E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS05795 9b848e3ab3f1dccf88e348679bbe8ec0 248 PANTHER PTHR33751 27 223 2.1E-21 T 23-04-2016 THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Gene3D G3DSA:1.20.1510.10 23 217 1.0E-46 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 SUPERFAMILY SSF160240 223 303 2.88E-19 T 23-04-2016 THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 SUPERFAMILY SSF161111 18 219 1.24E-52 T 23-04-2016 THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 PANTHER PTHR11562 4 310 3.8E-87 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 PANTHER PTHR11562:SF18 4 310 3.8E-87 T 23-04-2016 THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Gene3D G3DSA:3.30.70.1350 219 303 3.9E-24 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 21 302 2.4E-67 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Pfam PF16916 Dimerisation domain of Zinc Transporter 225 301 1.0E-22 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain THIMO_RS17500 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Pfam PF01545 Cation efflux family 26 218 1.0E-47 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 Gene3D G3DSA:3.40.1190.10 106 313 1.8E-62 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 16 456 35.362 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 Gene3D G3DSA:3.90.190.20 314 453 5.8E-47 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 Gene3D G3DSA:3.40.50.720 17 104 4.7E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 390 1.7E-9 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 PANTHER PTHR23135:SF2 10 458 2.9E-158 T 23-04-2016 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 SUPERFAMILY SSF53244 313 456 2.01E-46 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 PANTHER PTHR23135 10 458 2.9E-158 T 23-04-2016 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 SUPERFAMILY SSF53623 108 311 1.19E-53 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 Pfam PF08245 Mur ligase middle domain 122 293 3.4E-25 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 19 454 3.1E-127 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 THIMO_RS14790 add1e7329caadccc73437944c7e303f2 458 SUPERFAMILY SSF51984 17 106 4.32E-18 T 23-04-2016 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 274 156.573 T 23-04-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 Gene3D G3DSA:3.60.90.10 38 189 1.6E-46 T 23-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 Pfam PF02675 S-adenosylmethionine decarboxylase 42 173 1.1E-31 T 23-04-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 PANTHER PTHR33866:SF1 116 267 1.9E-143 T 23-04-2016 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 PANTHER PTHR33866:SF1 19 88 1.9E-143 T 23-04-2016 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 SUPERFAMILY SSF56276 116 178 4.71E-24 T 23-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 SUPERFAMILY SSF56276 47 88 4.71E-24 T 23-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 PANTHER PTHR33866 116 267 1.9E-143 T 23-04-2016 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 PANTHER PTHR33866 19 88 1.9E-143 T 23-04-2016 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 PIRSF PIRSF001356 3 267 8.2E-142 T 23-04-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS05645 c86905b9308a0076b26bfb11a1051cfe 274 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 7 265 4.7E-143 T 23-04-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 THIMO_RS01255 776fc9502b8c10700bc932f6373d9497 146 Gene3D G3DSA:1.20.120.340 9 130 2.9E-39 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 THIMO_RS01255 776fc9502b8c10700bc932f6373d9497 146 Pfam PF02561 Flagellar protein FliS 10 124 3.4E-35 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 THIMO_RS01255 776fc9502b8c10700bc932f6373d9497 146 PIRSF PIRSF039090 1 134 4.7E-41 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 THIMO_RS01255 776fc9502b8c10700bc932f6373d9497 146 TIGRFAM TIGR00208 fliS: flagellar protein FliS 15 124 7.0E-25 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 THIMO_RS01255 776fc9502b8c10700bc932f6373d9497 146 SUPERFAMILY SSF101116 10 129 1.7E-35 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 THIMO_RS01255 776fc9502b8c10700bc932f6373d9497 146 PANTHER PTHR34773 1 145 6.3E-39 T 23-04-2016 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 Gene3D G3DSA:4.10.520.10 1 90 6.4E-37 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 SUPERFAMILY SSF47729 1 90 5.0E-32 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.9E-19 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.9E-19 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.9E-19 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 SMART SM00411 1 90 2.6E-43 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 PANTHER PTHR33175 1 90 1.4E-42 T 23-04-2016 THIMO_RS02045 4eaf8a160e599369441319e569f90204 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 5.4E-34 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 THIMO_RS00435 762437a55fcf61bdc01430ac88445410 154 PANTHER PTHR10681 1 154 1.1E-37 T 23-04-2016 THIMO_RS00435 762437a55fcf61bdc01430ac88445410 154 PIRSF PIRSF000239 1 154 4.1E-23 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 THIMO_RS00435 762437a55fcf61bdc01430ac88445410 154 Gene3D G3DSA:3.40.30.10 1 154 8.1E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00435 762437a55fcf61bdc01430ac88445410 154 Pfam PF00578 AhpC/TSA family 5 133 6.5E-31 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS00435 762437a55fcf61bdc01430ac88445410 154 SUPERFAMILY SSF52833 1 154 5.3E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS14225 5337cf0b1616a56170613d8a163ad08d 47 SUPERFAMILY SSF56918 4 47 1.41E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14225 5337cf0b1616a56170613d8a163ad08d 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14225 5337cf0b1616a56170613d8a163ad08d 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14225 5337cf0b1616a56170613d8a163ad08d 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.5E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14225 5337cf0b1616a56170613d8a163ad08d 47 Gene3D G3DSA:1.20.5.250 8 47 9.3E-15 T 23-04-2016 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 8 107 3.7E-19 T 23-04-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 PANTHER PTHR34108:SF1 9 254 4.0E-51 T 23-04-2016 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 8 254 25.502 T 23-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 8 254 3.6E-67 T 23-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 152 252 1.6E-29 T 23-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 PANTHER PTHR34108 9 254 4.0E-51 T 23-04-2016 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 Gene3D G3DSA:2.160.20.70 141 254 1.1E-34 T 23-04-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 THIMO_RS09575 b11ff9eb7b69f610a20790408b57b0dc 254 SUPERFAMILY SSF63848 150 254 1.22E-29 T 23-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 SUPERFAMILY SSF52540 82 360 2.6E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 PANTHER PTHR15184 15 457 1.1E-199 T 23-04-2016 THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 5 460 49.404 T 23-04-2016 IPR022879 V-type ATP synthase regulatory subunit B/beta THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 Gene3D G3DSA:3.40.50.300 79 359 6.1E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 134 355 2.4E-60 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 15 77 8.2E-6 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS10825 7e6b89ef2445f7c7f1272d63775ec429 460 PANTHER PTHR15184:SF11 15 457 1.1E-199 T 23-04-2016 THIMO_RS03640 47d77cd0ea417b18cd79e02ff3f72bfd 321 Pfam PF13557 Putative MetA-pathway of phenol degradation 71 316 1.8E-59 T 23-04-2016 IPR025737 MetA-pathway of phenol degradation, putative THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 247 6.8E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 436 559 1.3E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.50.50.60 324 362 1.6E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.50.50.60 517 570 1.6E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.50.50.60 159 227 1.6E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.30.70.20 228 323 4.1E-11 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.30.70.20 572 641 1.9E-15 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.50.50.60 400 493 6.4E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.50.50.60 137 158 6.4E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 244 255 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 585 596 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 PANTHER PTHR10742:SF263 344 496 7.2E-92 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 PANTHER PTHR10742:SF263 66 309 7.2E-92 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 PANTHER PTHR10742 344 496 7.2E-92 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 PANTHER PTHR10742 66 309 7.2E-92 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 SUPERFAMILY SSF54862 550 636 1.4E-20 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 SUPERFAMILY SSF54862 397 414 1.4E-20 T 23-04-2016 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 SUPERFAMILY SSF51905 141 564 3.88E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS01220 5f25080f57cb65ab2c0c62385429d145 649 Pfam PF13187 4Fe-4S dicluster domain 584 629 4.4E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 Gene3D G3DSA:1.20.1560.10 12 320 7.8E-27 T 23-04-2016 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 Gene3D G3DSA:3.40.50.300 357 584 3.6E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 PANTHER PTHR24221:SF138 2 61 5.0E-117 T 23-04-2016 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 PANTHER PTHR24221:SF138 78 601 5.0E-117 T 23-04-2016 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 PANTHER PTHR24221 2 61 5.0E-117 T 23-04-2016 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 PANTHER PTHR24221 78 601 5.0E-117 T 23-04-2016 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 Pfam PF00005 ABC transporter 376 523 5.7E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SMART SM00382 383 569 9.1E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SUPERFAMILY SSF52540 348 584 1.33E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SUPERFAMILY SSF90123 11 319 1.83E-32 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS16970 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SUPERFAMILY SSF90123 499 507 1.83E-32 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS13815 a3d2526e21f9617ce55a65802688dafe 102 SUPERFAMILY SSF55008 14 55 4.35E-6 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS13815 a3d2526e21f9617ce55a65802688dafe 102 Gene3D G3DSA:3.30.70.100 14 55 2.5E-6 T 23-04-2016 THIMO_RS09685 2d16752f3e5c0310f5c620ddc3cb7268 475 SUPERFAMILY SSF53383 62 473 5.78E-55 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS09685 2d16752f3e5c0310f5c620ddc3cb7268 475 Pfam PF00266 Aminotransferase class-V 89 399 2.9E-28 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS09685 2d16752f3e5c0310f5c620ddc3cb7268 475 PANTHER PTHR11601 68 426 2.4E-42 T 23-04-2016 THIMO_RS09685 2d16752f3e5c0310f5c620ddc3cb7268 475 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 273 292 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site THIMO_RS09685 2d16752f3e5c0310f5c620ddc3cb7268 475 Gene3D G3DSA:3.40.640.10 119 352 1.3E-38 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS01035 54de5b8530e7c6188a70f9ae873f8225 108 SUPERFAMILY SSF143120 14 73 5.36E-7 T 23-04-2016 THIMO_RS01035 54de5b8530e7c6188a70f9ae873f8225 108 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 14 59 1.0E-6 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 PANTHER PTHR11730:SF17 33 436 2.4E-183 T 23-04-2016 THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 TIGRFAM TIGR00836 amt: ammonium transporter 36 435 2.6E-136 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 SUPERFAMILY SSF111352 33 416 5.23E-130 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 PANTHER PTHR11730 33 436 2.4E-183 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 Pfam PF00909 Ammonium Transporter Family 38 435 6.8E-119 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 Gene3D G3DSA:1.10.3430.10 33 416 1.1E-138 T 23-04-2016 IPR029020 Ammonium/urea transporter THIMO_RS09230 2b9870bcd3432ebac9b016d81eac8740 437 ProSitePatterns PS01219 Ammonium transporters signature. 187 212 - T 23-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 THIMO_RS01135 37ba9888f3ea706489c4049091fe8e0a 431 Gene3D G3DSA:3.30.470.20 93 221 4.2E-23 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS01135 37ba9888f3ea706489c4049091fe8e0a 431 SUPERFAMILY SSF52210 249 385 7.32E-5 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01135 37ba9888f3ea706489c4049091fe8e0a 431 Pfam PF16114 ATP citrate lyase citrate-binding 247 401 8.9E-19 T 23-04-2016 IPR032263 ATP-citrate synthase, citrate-binding domain KEGG: 00020+2.3.3.8|KEGG: 00720+2.3.3.8|MetaCyc: PWY-5172 THIMO_RS01135 37ba9888f3ea706489c4049091fe8e0a 431 Pfam PF08442 ATP-grasp domain 53 197 3.4E-15 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01135 37ba9888f3ea706489c4049091fe8e0a 431 Gene3D G3DSA:3.40.50.261 260 376 8.4E-5 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 THIMO_RS01135 37ba9888f3ea706489c4049091fe8e0a 431 SUPERFAMILY SSF56059 8 222 2.26E-28 T 23-04-2016 THIMO_RS18605 233e1f3897507c7b4786b4115db43182 199 PANTHER PTHR38831:SF1 32 199 4.2E-18 T 23-04-2016 THIMO_RS18605 233e1f3897507c7b4786b4115db43182 199 Gene3D G3DSA:1.10.40.60 137 198 1.0E-12 T 23-04-2016 THIMO_RS18605 233e1f3897507c7b4786b4115db43182 199 SUPERFAMILY SSF158544 136 198 5.75E-13 T 23-04-2016 THIMO_RS18605 233e1f3897507c7b4786b4115db43182 199 Pfam PF03934 Type II secretion system (T2SS), protein K 56 198 8.3E-19 T 23-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 THIMO_RS18605 233e1f3897507c7b4786b4115db43182 199 PANTHER PTHR38831 32 199 4.2E-18 T 23-04-2016 THIMO_RS14200 ad75a80cf6d4b6ca80df546c36b7110e 125 Gene3D G3DSA:2.60.120.10 9 105 3.9E-14 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS14200 ad75a80cf6d4b6ca80df546c36b7110e 125 Pfam PF07883 Cupin domain 40 94 3.2E-7 T 23-04-2016 IPR013096 Cupin 2, conserved barrel THIMO_RS14200 ad75a80cf6d4b6ca80df546c36b7110e 125 SUPERFAMILY SSF51182 5 123 7.74E-18 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 Gene3D G3DSA:4.10.640.10 8 73 1.5E-31 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 Pfam PF01084 Ribosomal protein S18 18 68 2.2E-24 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 PANTHER PTHR13479 3 72 8.7E-31 T 23-04-2016 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.462 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 5.0E-20 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.4E-36 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 23-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 SUPERFAMILY SSF46911 3 74 3.4E-28 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 9.6E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 9.6E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 9.6E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS07225 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.6E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS03290 c0864ea19445b0801d2a184fe3322655 227 Gene3D G3DSA:3.60.160.10 2 225 2.2E-73 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 THIMO_RS03290 c0864ea19445b0801d2a184fe3322655 227 Pfam PF01987 Mitochondrial biogenesis AIM24 3 209 7.0E-64 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 THIMO_RS03290 c0864ea19445b0801d2a184fe3322655 227 PANTHER PTHR31801:SF0 3 220 1.2E-72 T 23-04-2016 THIMO_RS03290 c0864ea19445b0801d2a184fe3322655 227 SUPERFAMILY SSF51219 3 226 7.06E-68 T 23-04-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain THIMO_RS03290 c0864ea19445b0801d2a184fe3322655 227 PANTHER PTHR31801 3 220 1.2E-72 T 23-04-2016 THIMO_RS03290 c0864ea19445b0801d2a184fe3322655 227 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 2 225 6.9E-55 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 THIMO_RS01110 a42caec101bdfa43be3f39bb348510f9 215 PIRSF PIRSF006102 6 208 2.0E-61 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS01110 a42caec101bdfa43be3f39bb348510f9 215 PANTHER PTHR30586 6 209 3.1E-62 T 23-04-2016 THIMO_RS01110 a42caec101bdfa43be3f39bb348510f9 215 Pfam PF02508 Rnf-Nqr subunit, membrane protein 10 188 2.2E-50 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 SUPERFAMILY SSF63380 1 88 8.33E-25 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 Pfam PF00677 Lumazine binding domain 100 184 4.2E-22 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 Pfam PF00677 Lumazine binding domain 3 87 1.0E-20 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 PIRSF PIRSF000498 1 212 1.8E-72 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 PANTHER PTHR21098 1 219 2.9E-101 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 SUPERFAMILY SSF63380 94 194 1.11E-31 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 Gene3D G3DSA:2.40.30.20 105 194 2.5E-31 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 Gene3D G3DSA:2.40.30.20 5 104 2.4E-30 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS01025 d03a17af8a8696451b553956df3ebd08 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 198 1.8E-60 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 PANTHER PTHR30024:SF16 36 254 4.2E-50 T 23-04-2016 THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 Pfam PF13379 NMT1-like family 33 261 4.1E-51 T 23-04-2016 THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 PANTHER PTHR30024 36 254 4.2E-50 T 23-04-2016 THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 SUPERFAMILY SSF53850 33 255 1.58E-47 T 23-04-2016 THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 36 319 6.9E-52 T 23-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 SMART SM00062 35 275 0.0074 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS01075 8faee2681b2971c157bd13196c0ca935 323 Gene3D G3DSA:3.40.190.10 110 236 7.0E-23 T 23-04-2016 THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 Pfam PF00281 Ribosomal protein L5 25 80 2.0E-27 T 23-04-2016 IPR031310 Ribosomal protein L5, N-terminal THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 SUPERFAMILY SSF55282 3 179 3.06E-77 T 23-04-2016 IPR022803 Ribosomal protein L5 domain THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 PIRSF PIRSF002161 1 179 2.8E-64 T 23-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 Gene3D G3DSA:3.30.1440.10 1 179 2.3E-76 T 23-04-2016 IPR022803 Ribosomal protein L5 domain THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.597 T 23-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 23-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 PANTHER PTHR11994 1 178 6.5E-93 T 23-04-2016 THIMO_RS13570 2dcca1f20f049336dcdf47ee7887619a 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 2.9E-41 T 23-04-2016 IPR031309 Ribosomal protein L5, C-terminal THIMO_RS12155 64adcc44e496134f69853b60438d2c0e 297 Gene3D G3DSA:3.40.50.10330 6 152 1.1E-35 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS12155 64adcc44e496134f69853b60438d2c0e 297 Hamap MF_00361 NAD kinase [nadK]. 5 287 32.769 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS12155 64adcc44e496134f69853b60438d2c0e 297 PANTHER PTHR20275 6 288 3.8E-82 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS12155 64adcc44e496134f69853b60438d2c0e 297 Pfam PF01513 ATP-NAD kinase 60 270 1.2E-56 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS12155 64adcc44e496134f69853b60438d2c0e 297 Gene3D G3DSA:2.60.200.30 153 263 1.5E-40 T 23-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 THIMO_RS12155 64adcc44e496134f69853b60438d2c0e 297 SUPERFAMILY SSF111331 8 288 4.97E-81 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 PANTHER PTHR24423 13 322 2.3E-67 T 23-04-2016 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 269 287 1.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 253 263 1.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 293 306 1.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 235 249 1.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 Pfam PF00672 HAMP domain 9 72 9.1E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 Gene3D G3DSA:3.30.565.10 157 307 9.3E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 SMART SM00388 84 152 2.0E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 Gene3D G3DSA:1.10.287.130 75 146 5.3E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 SUPERFAMILY SSF55874 141 310 1.09E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 SMART SM00387 198 309 9.1E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 SUPERFAMILY SSF47384 67 152 5.3E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 Pfam PF00512 His Kinase A (phospho-acceptor) domain 86 151 1.3E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS15685 0af2cd6288afd89f8791697a5f9bd2fe 324 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 203 306 7.0E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF51735 2101 2271 3.13E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF51735 2017 2057 3.13E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.40.47.10 887 1046 3.0E-48 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SMART SM00825 Beta-ketoacyl synthase 608 1047 3.4E-108 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF52151 1340 1440 8.37E-53 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF52151 1145 1274 8.37E-53 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.40.366.10 1143 1268 4.5E-53 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.40.366.10 1339 1447 4.5E-53 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF00550 Phosphopantetheine attachment site 1606 1652 2.8E-6 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF00550 Phosphopantetheine attachment site 1708 1755 1.1E-5 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF03060 Nitronate monooxygenase 248 579 1.7E-12 T 23-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:1.10.1200.10 1603 1682 3.2E-12 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:1.10.1200.10 1705 1787 3.7E-13 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF53901 1022 1037 4.5E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF53901 767 992 4.5E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF53901 604 724 4.5E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1149 1448 5.1E-24 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.20.20.70 253 468 2.8E-12 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF55048 1276 1338 4.45E-10 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF47336 1705 1799 2.09E-10 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 PANTHER PTHR11712:SF234 97 1528 0.0 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 PANTHER PTHR11712:SF234 2239 2248 0.0 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF51412 251 513 3.94E-16 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 879 996 1.8E-34 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 PANTHER PTHR11712 2239 2248 0.0 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 PANTHER PTHR11712 97 1528 0.0 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF00698 Acyl transferase domain 1149 1428 2.0E-27 T 23-04-2016 IPR014043 Acyl transferase THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.40.47.10 608 883 1.8E-73 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 607 871 5.1E-70 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.40.50.720 2018 2051 9.4E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.40.50.720 2096 2272 9.4E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF47336 1599 1683 1.22E-10 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 784 800 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Pfam PF08659 KR domain 2019 2237 1.4E-35 T 23-04-2016 IPR013968 Polyketide synthase, ketoreductase domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2018 2239 7.2E-30 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF51412 55 159 9.06E-8 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.30.70.250 1274 1338 2.2E-10 T 23-04-2016 THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 SUPERFAMILY SSF51735 1840 2001 1.29E-9 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06875 cb9016011468bc249845fb37aa91ca00 2293 Gene3D G3DSA:3.20.20.70 54 133 9.2E-6 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS07555 d80c8fd9c1832eef1d1d394e2c8081a0 194 Gene3D G3DSA:2.40.128.110 24 193 4.6E-59 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS07555 d80c8fd9c1832eef1d1d394e2c8081a0 194 PANTHER PTHR34406 5 194 4.1E-60 T 23-04-2016 THIMO_RS07555 d80c8fd9c1832eef1d1d394e2c8081a0 194 PANTHER PTHR34406:SF1 5 194 4.1E-60 T 23-04-2016 THIMO_RS07555 d80c8fd9c1832eef1d1d394e2c8081a0 194 SMART SM00867 26 191 3.0E-67 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS07555 d80c8fd9c1832eef1d1d394e2c8081a0 194 Pfam PF04264 YceI-like domain 27 189 8.2E-39 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS07555 d80c8fd9c1832eef1d1d394e2c8081a0 194 SUPERFAMILY SSF101874 24 193 6.54E-54 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 Pfam PF00209 Sodium:neurotransmitter symporter family 10 125 1.3E-24 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 Pfam PF00209 Sodium:neurotransmitter symporter family 156 450 5.2E-29 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 32 46 - T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 PANTHER PTHR11616 11 449 2.0E-150 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 SUPERFAMILY SSF161070 9 449 1.09E-132 T 23-04-2016 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 PANTHER PTHR11616:SF167 11 449 2.0E-150 T 23-04-2016 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 430 450 1.8E-17 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 16 37 1.8E-17 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 45 64 1.8E-17 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS12185 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 259 279 1.8E-17 T 23-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 PANTHER PTHR32071:SF28 1 448 7.1E-229 T 23-04-2016 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:3.40.50.2300 3 138 1.1E-34 T 23-04-2016 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:1.10.10.60 390 448 6.1E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 SMART SM00382 158 300 5.6E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Pfam PF00158 Sigma-54 interaction domain 138 304 6.2E-67 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 SUPERFAMILY SSF46689 352 448 1.52E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Pfam PF02954 Bacterial regulatory protein, Fis family 405 445 2.4E-14 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:1.10.8.60 311 384 1.6E-22 T 23-04-2016 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 SUPERFAMILY SSF52540 138 379 2.25E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 SMART SM00448 4 115 1.0E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 PANTHER PTHR32071 1 448 7.1E-229 T 23-04-2016 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 448 1.4E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 411 428 1.4E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:3.40.50.300 139 310 6.4E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 SUPERFAMILY SSF52172 1 181 7.26E-43 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS10505 ea6912376c1d614685b524011b61cefc 448 Pfam PF00072 Response regulator receiver domain 7 115 3.1E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS01985 47b9cb16aacfcdb0abcf19b3fa581b24 284 PANTHER PTHR10992 9 284 8.3E-21 T 23-04-2016 THIMO_RS01985 47b9cb16aacfcdb0abcf19b3fa581b24 284 Pfam PF12697 Alpha/beta hydrolase family 33 278 3.8E-15 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS01985 47b9cb16aacfcdb0abcf19b3fa581b24 284 Gene3D G3DSA:3.40.50.1820 7 284 2.8E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS01985 47b9cb16aacfcdb0abcf19b3fa581b24 284 SUPERFAMILY SSF53474 8 284 8.45E-37 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 Gene3D G3DSA:3.40.50.300 121 185 1.1E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 Gene3D G3DSA:3.40.50.300 254 370 1.1E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 PANTHER PTHR36451 101 402 3.6E-34 T 23-04-2016 THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 SUPERFAMILY SSF52540 253 377 2.96E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 SUPERFAMILY SSF52540 121 155 2.96E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 Pfam PF13469 Sulfotransferase family 121 369 1.7E-40 T 23-04-2016 THIMO_RS06895 deb37ce141d8cab449a3ab7ae9656595 411 PANTHER PTHR36451:SF1 101 402 3.6E-34 T 23-04-2016 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 SMART SM00965 325 373 1.2E-11 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF00263 Bacterial type II and III secretion system protein 564 723 1.7E-51 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF07660 Secretin and TonB N terminus short domain 326 372 2.0E-10 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF03958 Bacterial type II/III secretion system short domain 401 463 5.7E-14 T 23-04-2016 IPR005644 NolW-like THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 668 701 - T 23-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF11741 AMIN domain 53 138 3.2E-9 T 23-04-2016 IPR021731 AMIN domain THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 300 723 2.8E-162 T 23-04-2016 IPR013355 Type IV pilus secretin PilQ GO:0009297|GO:0009306 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 PANTHER PTHR30604 180 731 2.5E-118 T 23-04-2016 THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 560 584 7.0E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 687 705 7.0E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 463 473 7.0E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS00410 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 710 724 7.0E-17 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Pfam PF03705 CheR methyltransferase, all-alpha domain 245 292 5.5E-14 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.30.450.20 883 995 2.3E-13 T 23-04-2016 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PANTHER PTHR24422 130 888 4.1E-293 T 23-04-2016 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.30.450.20 552 648 3.4E-5 T 23-04-2016 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF55785 875 996 1.36E-14 T 23-04-2016 IPR000014 PAS domain THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF55785 782 888 3.62E-6 T 23-04-2016 IPR000014 PAS domain THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF53335 306 502 1.54E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF47757 242 309 3.66E-14 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SMART SM00138 240 503 1.1E-70 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PANTHER PTHR24422:SF6 130 888 4.1E-293 T 23-04-2016 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Pfam PF01339 CheB methylesterase 42 217 2.4E-50 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.30.450.20 770 882 1.6E-6 T 23-04-2016 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:1.10.155.10 242 303 2.5E-14 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.40.50.180 36 223 1.1E-60 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Pfam PF13596 PAS domain 771 876 7.6E-27 T 23-04-2016 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF52738 38 223 1.96E-54 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Pfam PF01739 CheR methyltransferase, SAM binding domain 307 498 1.3E-48 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.40.50.150 305 502 3.0E-58 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SMART SM00091 891 958 1.1E-4 T 23-04-2016 IPR000014 PAS domain THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 SMART SM00091 769 838 65.0 T 23-04-2016 IPR000014 PAS domain THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 Pfam PF08448 PAS fold 898 1007 1.7E-9 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 462 485 2.8E-26 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 443 457 2.8E-26 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 375 391 2.8E-26 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 339 359 2.8E-26 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 299 311 2.8E-26 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS11910 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 262 275 2.8E-26 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 SMART SM00267 382 538 7.6E-4 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 Gene3D G3DSA:3.10.580.10 268 388 3.9E-5 T 23-04-2016 THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 Gene3D G3DSA:3.30.70.270 398 501 5.8E-14 T 23-04-2016 THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 SUPERFAMILY SSF54631 286 386 9.58E-6 T 23-04-2016 THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 PANTHER PTHR33121 13 271 1.6E-45 T 23-04-2016 THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 SMART SM00052 1 234 5.1E-35 T 23-04-2016 IPR001633 EAL domain THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 SUPERFAMILY SSF141868 8 231 5.75E-59 T 23-04-2016 IPR001633 EAL domain THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 Gene3D G3DSA:3.20.20.450 8 230 9.1E-57 T 23-04-2016 IPR001633 EAL domain THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 SUPERFAMILY SSF55073 400 502 1.02E-15 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 Pfam PF00990 Diguanylate cyclase, GGDEF domain 399 479 4.5E-9 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 Pfam PF00563 EAL domain 7 229 1.1E-51 T 23-04-2016 IPR001633 EAL domain THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 PANTHER PTHR33121:SF10 13 271 1.6E-45 T 23-04-2016 THIMO_RS02435 ac233549892f45bb073a3beef9c7481e 577 Pfam PF00571 CBS domain 268 315 4.6E-5 T 23-04-2016 IPR000644 CBS domain THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 Gene3D G3DSA:3.40.50.300 1 156 1.3E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 PANTHER PTHR11649 1 154 3.1E-59 T 23-04-2016 THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 PANTHER PTHR11649:SF37 1 154 3.1E-59 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 22 40 4.1E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 1 21 4.1E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 SUPERFAMILY SSF52540 1 156 5.43E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18245 ad2110f100a9c97a2bf3d3dc07e54033 158 Pfam PF02421 Ferrous iron transport protein B 1 153 3.2E-58 T 23-04-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 THIMO_RS00270 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 Gene3D G3DSA:3.60.21.10 13 131 2.1E-31 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS00270 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 Gene3D G3DSA:3.60.21.10 193 248 2.1E-31 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS00270 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 PANTHER PTHR34990:SF2 1 255 1.0E-124 T 23-04-2016 THIMO_RS00270 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 SUPERFAMILY SSF56300 12 251 3.14E-31 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS00270 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 PANTHER PTHR34990 1 255 1.0E-124 T 23-04-2016 THIMO_RS00270 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 15 228 5.8E-12 T 23-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 196 222 - T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 Gene3D G3DSA:1.20.85.10 3 144 8.7E-59 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 Gene3D G3DSA:1.20.85.10 145 303 2.9E-54 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 202 228 1.1E-43 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 56 77 1.1E-43 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 113 141 1.1E-43 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 262 287 1.1E-43 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 146 168 1.1E-43 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 SUPERFAMILY SSF81483 3 308 1.16E-113 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PANTHER PTHR33149 52 224 6.2E-22 T 23-04-2016 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 PANTHER PTHR33149:SF2 52 224 6.2E-22 T 23-04-2016 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 Pfam PF00124 Photosynthetic reaction centre protein 52 304 7.2E-96 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 THIMO_RS14255 4384cc051d38ccf4015e06ad4e54061a 308 TIGRFAM TIGR01115 pufM: photosynthetic reaction center M subunit 1 306 7.9E-143 T 23-04-2016 IPR005781 Photosynthetic reaction centre, M subunit GO:0019684|GO:0030077|GO:0045156 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 SUPERFAMILY SSF142019 4 241 2.35E-85 T 23-04-2016 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 169 184 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 PANTHER PTHR11780 1 417 3.1E-224 T 23-04-2016 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 414 1.8E-31 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 SUPERFAMILY SSF142984 243 325 8.24E-25 T 23-04-2016 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 50 221 7.1E-47 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 SMART SM00928 331 376 3.5E-28 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 10 416 9.1E-194 T 23-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 PANTHER PTHR11780:SF10 1 417 3.1E-224 T 23-04-2016 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 SUPERFAMILY SSF140490 328 422 4.84E-37 T 23-04-2016 THIMO_RS02815 af82f19d1f6cc880b89764c354b4e237 425 Pfam PF10531 SLBB domain 245 293 1.6E-14 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 PANTHER PTHR11564:SF16 68 377 3.9E-136 T 23-04-2016 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Gene3D G3DSA:3.40.50.300 168 374 1.5E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Pfam PF00448 SRP54-type protein, GTPase domain 174 374 7.4E-79 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SUPERFAMILY SSF47364 74 153 2.62E-17 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SUPERFAMILY SSF52540 169 375 2.24E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 102 375 61.393 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 PANTHER PTHR11564 68 377 3.9E-136 T 23-04-2016 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SMART SM00963 78 159 2.5E-17 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SMART SM00382 173 380 5.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SMART SM00962 174 375 2.2E-123 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Pfam PF02881 SRP54-type protein, helical bundle domain 89 155 3.3E-9 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 103 374 4.4E-108 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Gene3D G3DSA:1.20.120.140 68 155 3.2E-23 T 23-04-2016 THIMO_RS17200 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 348 361 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 THIMO_RS15500 06cd03954c3bf4e920b6ae99f23f9983 412 SUPERFAMILY SSF56935 69 412 8.7E-25 T 23-04-2016 THIMO_RS15500 06cd03954c3bf4e920b6ae99f23f9983 412 Gene3D G3DSA:2.40.160.10 263 401 7.2E-8 T 23-04-2016 IPR023614 Porin domain THIMO_RS15500 06cd03954c3bf4e920b6ae99f23f9983 412 Gene3D G3DSA:2.40.160.10 34 217 7.2E-8 T 23-04-2016 IPR023614 Porin domain THIMO_RS04145 fda35d4069d5e7075dd573b4456ff7d1 79 SUPERFAMILY SSF143120 4 47 8.37E-10 T 23-04-2016 THIMO_RS04145 fda35d4069d5e7075dd573b4456ff7d1 79 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 6 39 5.1E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS04145 fda35d4069d5e7075dd573b4456ff7d1 79 Gene3D G3DSA:3.40.1620.10 2 39 1.4E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS04145 fda35d4069d5e7075dd573b4456ff7d1 79 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 43 1.2E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 Pfam PF13545 Crp-like helix-turn-helix domain 164 232 7.9E-14 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 PANTHER PTHR24567 22 232 2.1E-31 T 23-04-2016 THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 Gene3D G3DSA:1.10.10.10 162 234 2.4E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 SUPERFAMILY SSF51206 20 158 4.06E-27 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 Pfam PF00027 Cyclic nucleotide-binding domain 48 128 1.5E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 PANTHER PTHR24567:SF32 22 232 2.1E-31 T 23-04-2016 THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 SUPERFAMILY SSF46785 162 234 1.01E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 SMART SM00100 27 144 5.9E-8 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 SMART SM00419 178 225 0.0019 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS12485 1e58f72390f2a9690a60254b739d131e 238 Gene3D G3DSA:2.60.120.10 22 157 5.1E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS02695 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 SUPERFAMILY SSF53098 200 321 5.01E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS02695 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Pfam PF00665 Integrase core domain 210 302 2.2E-7 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS02695 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Gene3D G3DSA:3.30.420.10 200 305 2.2E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS02650 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 SUPERFAMILY SSF53098 200 321 5.01E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS02650 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Pfam PF00665 Integrase core domain 210 302 2.2E-7 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS02650 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Gene3D G3DSA:3.30.420.10 200 305 2.2E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS00280 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 SUPERFAMILY SSF53098 200 321 5.01E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS00280 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Pfam PF00665 Integrase core domain 210 302 2.2E-7 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS00280 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Gene3D G3DSA:3.30.420.10 200 305 2.2E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS07215 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 SUPERFAMILY SSF53098 200 321 5.01E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS07215 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Pfam PF00665 Integrase core domain 210 302 2.2E-7 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS07215 ce83a2cd8d2ada095c2c735ee0f5c4d2 419 Gene3D G3DSA:3.30.420.10 200 305 2.2E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 Gene3D G3DSA:1.25.40.10 53 142 4.4E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 195 223 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 PANTHER PTHR21666 159 298 3.4E-35 T 23-04-2016 THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 SUPERFAMILY SSF53955 168 293 5.94E-45 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 Pfam PF08238 Sel1 repeat 99 134 7.0E-6 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 Pfam PF08238 Sel1 repeat 70 98 0.033 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 SMART SM00671 63 98 0.97 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 SMART SM00671 99 134 1.3E-6 T 23-04-2016 IPR006597 Sel1-like repeat THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 Pfam PF01464 Transglycosylase SLT domain 182 277 1.3E-25 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 Gene3D G3DSA:1.10.530.10 168 292 5.0E-45 T 23-04-2016 THIMO_RS03135 80a528527f5150f0d4b811bffced845a 298 SUPERFAMILY SSF81901 53 140 2.22E-15 T 23-04-2016 THIMO_RS10080 8b3189131c75c95ff29d42c38fdf5627 148 SUPERFAMILY SSF52833 29 105 7.47E-6 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS10080 8b3189131c75c95ff29d42c38fdf5627 148 Pfam PF04214 Protein of unknown function, DUF 55 123 3.4E-31 T 23-04-2016 IPR007332 Protein of unknown function DUF411 THIMO_RS10080 8b3189131c75c95ff29d42c38fdf5627 148 Gene3D G3DSA:3.40.30.10 30 101 3.4E-5 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.182 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 SUPERFAMILY SSF52540 96 381 3.84E-94 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 PANTHER PTHR15184:SF3 1 496 1.4E-286 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 PANTHER PTHR15184 1 496 1.4E-286 T 23-04-2016 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Gene3D G3DSA:1.20.150.20 383 510 8.6E-49 T 23-04-2016 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Gene3D G3DSA:2.40.30.20 1 93 5.0E-29 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 SUPERFAMILY SSF50615 10 94 9.61E-26 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.2E-45 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Gene3D G3DSA:3.40.50.300 95 382 6.0E-113 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 PIRSF PIRSF039088 1 513 8.5E-233 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 1.8E-12 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 511 5.6E-250 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.2E-73 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS05590 c230a3fd5ee0d5c1d886d5f351b45835 513 SUPERFAMILY SSF47917 383 510 9.42E-47 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 SUPERFAMILY SSF51569 6 270 1.47E-103 T 23-04-2016 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 14 269 3.2E-120 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 Pfam PF00793 DAHP synthetase I family 9 268 3.8E-67 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 PANTHER PTHR21057 7 277 1.1E-161 T 23-04-2016 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 9 271 52.683 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 PANTHER PTHR21057:SF2 7 277 1.1E-161 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 THIMO_RS06330 0b1bbad2f5e55230e0f3650b78c594f3 278 Gene3D G3DSA:3.20.20.70 13 270 1.3E-111 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS04200 3070dc6e153f1445ae8e9828a629959a 505 Gene3D G3DSA:3.40.50.1820 39 246 3.3E-29 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS04200 3070dc6e153f1445ae8e9828a629959a 505 Pfam PF12146 Serine aminopeptidase, S33 50 166 1.1E-13 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 THIMO_RS04200 3070dc6e153f1445ae8e9828a629959a 505 SUPERFAMILY SSF53474 28 248 1.77E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS04200 3070dc6e153f1445ae8e9828a629959a 505 PANTHER PTHR11614 41 179 1.0E-13 T 23-04-2016 THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 SUPERFAMILY SSF56281 1 213 9.94E-34 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 Gene3D G3DSA:3.40.250.10 364 462 2.8E-29 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 SMART SM00450 365 460 4.1E-22 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 SMART SM00450 260 357 2.0 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 Gene3D G3DSA:3.60.15.10 4 243 1.3E-40 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 SUPERFAMILY SSF52821 230 358 1.11E-16 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 Gene3D G3DSA:3.40.250.10 257 358 1.1E-10 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 PANTHER PTHR11935:SF9 1 245 3.3E-57 T 23-04-2016 THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 Pfam PF00581 Rhodanese-like domain 265 352 6.1E-5 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 Pfam PF00581 Rhodanese-like domain 369 456 2.8E-12 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 SMART SM00849 12 184 1.1E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 PANTHER PTHR11935 1 245 3.3E-57 T 23-04-2016 THIMO_RS00775 7e83a84928ee49c23c8526c6aca967f4 463 SUPERFAMILY SSF52821 362 463 4.58E-30 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 SMART SM00382 26 238 1.9E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 SUPERFAMILY SSF52540 2 230 5.66E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 Gene3D G3DSA:3.40.50.300 1 235 1.2E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 PANTHER PTHR24220 3 248 8.7E-127 T 23-04-2016 THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 Pfam PF00005 ABC transporter 18 172 4.6E-20 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 PANTHER PTHR24220:SF85 3 248 8.7E-127 T 23-04-2016 THIMO_RS10610 73f87746c3c217645a5e99ad1c702459 250 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 4.3E-108 T 23-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 THIMO_RS12430 1bcacaffa309cccc3ad874317d3844a1 211 Gene3D G3DSA:3.90.950.10 18 204 1.1E-63 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like THIMO_RS12430 1bcacaffa309cccc3ad874317d3844a1 211 PIRSF PIRSF006305 12 209 2.6E-46 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS12430 1bcacaffa309cccc3ad874317d3844a1 211 TIGRFAM TIGR00172 maf: septum formation protein Maf 18 199 3.3E-46 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS12430 1bcacaffa309cccc3ad874317d3844a1 211 SUPERFAMILY SSF52972 18 199 9.81E-57 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like THIMO_RS12430 1bcacaffa309cccc3ad874317d3844a1 211 Pfam PF02545 Maf-like protein 18 200 7.2E-53 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS12430 1bcacaffa309cccc3ad874317d3844a1 211 Hamap MF_00528 Septum formation protein Maf [maf]. 18 206 31.367 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS16415 ba9c585d628c1a2dc56e1fdec61a27fa 164 Pfam PF13673 Acetyltransferase (GNAT) domain 29 148 1.4E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS16415 ba9c585d628c1a2dc56e1fdec61a27fa 164 SUPERFAMILY SSF55729 27 152 2.34E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS16415 ba9c585d628c1a2dc56e1fdec61a27fa 164 Gene3D G3DSA:3.40.630.30 11 148 7.4E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS16415 ba9c585d628c1a2dc56e1fdec61a27fa 164 PANTHER PTHR36449 1 159 2.8E-44 T 23-04-2016 THIMO_RS12760 507a929a64e289f3cff84cdcd7038214 62 PANTHER PTHR33215:SF2 1 40 8.0E-15 T 23-04-2016 THIMO_RS12760 507a929a64e289f3cff84cdcd7038214 62 PANTHER PTHR33215 1 40 8.0E-15 T 23-04-2016 THIMO_RS12760 507a929a64e289f3cff84cdcd7038214 62 SUPERFAMILY SSF48295 4 39 9.94E-6 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 THIMO_RS11960 b1b432defe672fb461a61184724b75f6 703 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 157 9.6E-22 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS11960 b1b432defe672fb461a61184724b75f6 703 Gene3D G3DSA:2.40.170.20 157 701 4.5E-61 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS11960 b1b432defe672fb461a61184724b75f6 703 Pfam PF00593 TonB dependent receptor 439 698 2.2E-28 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS11960 b1b432defe672fb461a61184724b75f6 703 PANTHER PTHR32552 1 701 1.6E-36 T 23-04-2016 THIMO_RS11960 b1b432defe672fb461a61184724b75f6 703 Gene3D G3DSA:2.170.130.10 35 156 3.6E-26 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS11960 b1b432defe672fb461a61184724b75f6 703 SUPERFAMILY SSF56935 33 701 5.49E-89 T 23-04-2016 THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 563 600 1.54E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 187 244 1.54E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 20 111 1.54E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 PANTHER PTHR11472 20 622 5.4E-183 T 23-04-2016 THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 Pfam PF13307 Helicase C-terminal domain 459 617 5.3E-35 T 23-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 Gene3D G3DSA:3.40.50.300 14 112 3.9E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 Gene3D G3DSA:3.40.50.300 186 235 3.9E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SMART SM00487 19 432 0.0025 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 Pfam PF00270 DEAD/DEAH box helicase 31 84 2.3E-5 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SMART SM00491 475 604 1.8E-40 T 23-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 574 588 2.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 389 543 2.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 185 230 2.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10050 eb2eebec0431eba934383fbb96ac0f97 651 PANTHER PTHR11472:SF37 20 622 5.4E-183 T 23-04-2016 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 PANTHER PTHR30602 18 448 3.5E-193 T 23-04-2016 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 SUPERFAMILY SSF55729 304 425 3.26E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 PANTHER PTHR30602:SF3 18 448 3.5E-193 T 23-04-2016 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 Pfam PF00696 Amino acid kinase family 36 274 1.0E-26 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 SUPERFAMILY SSF53633 17 299 1.14E-66 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 448 205.124 T 23-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 18 448 1.7E-180 T 23-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 Gene3D G3DSA:3.40.1160.10 33 297 2.8E-66 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 PIRSF PIRSF000423 9 448 3.5E-186 T 23-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 Pfam PF00583 Acetyltransferase (GNAT) family 347 420 1.8E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS10510 32e24cd463ab95989cb2783dd46ed255 448 Gene3D G3DSA:3.40.630.30 304 446 5.5E-39 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PANTHER PTHR30603 324 610 3.0E-241 T 23-04-2016 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PANTHER PTHR30603 1 152 3.0E-241 T 23-04-2016 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 SUPERFAMILY SSF88659 450 523 1.07E-20 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 373 598 4.0E-37 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF03979 Sigma-70 factor, region 1.1 4 80 1.8E-27 T 23-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PANTHER PTHR30603:SF0 324 610 3.0E-241 T 23-04-2016 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PANTHER PTHR30603:SF0 1 152 3.0E-241 T 23-04-2016 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04545 Sigma-70, region 4 546 598 1.5E-18 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 610 44.969 T 23-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04542 Sigma-70 region 2 377 446 1.7E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.10.10 450 501 1.3E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF00140 Sigma-70 factor, region 1.2 98 129 2.6E-12 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04539 Sigma-70 region 3 456 532 9.2E-30 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 401 414 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.10.10 539 610 3.9E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 425 433 5.6E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 401 414 5.6E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 585 596 5.6E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 570 585 5.6E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 549 561 5.6E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04546 Sigma-70, non-essential region 139 346 9.8E-65 T 23-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 SUPERFAMILY SSF88659 507 609 2.43E-26 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 SUPERFAMILY SSF88946 115 444 4.26E-99 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.601.10 112 446 6.3E-125 T 23-04-2016 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 373 609 2.7E-120 T 23-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 THIMO_RS02630 564d234d6a3ccc773efced9f9f7196f2 612 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 570 596 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 SUPERFAMILY SSF74653 161 238 7.98E-24 T 23-04-2016 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 158 179 5.7E-5 T 23-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 179 197 5.7E-5 T 23-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 100 110 5.7E-5 T 23-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 Gene3D G3DSA:3.30.1150.10 161 242 1.5E-19 T 23-04-2016 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 164 240 3.2E-24 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 162 240 3.3E-23 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS18405 7dcd6f10e7bf37cd289c93d7e2296118 242 PANTHER PTHR33446 68 242 1.3E-21 T 23-04-2016 THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 PANTHER PTHR30580 38 782 5.4E-257 T 23-04-2016 THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 SUPERFAMILY SSF52540 226 426 1.36E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 SMART SM00490 540 637 1.5E-8 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 SMART SM00487 243 443 8.0E-14 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 SUPERFAMILY SSF52540 455 482 3.88E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 SUPERFAMILY SSF52540 543 657 3.88E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 Pfam PF00271 Helicase conserved C-terminal domain 541 636 1.9E-4 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 TIGRFAM TIGR00595 priA: primosomal protein N' 269 778 2.2E-179 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 Gene3D G3DSA:3.40.50.300 455 476 1.8E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 Gene3D G3DSA:3.40.50.300 541 681 1.8E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 Pfam PF00270 DEAD/DEAH box helicase 268 412 9.3E-9 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 Hamap MF_00983 Probable primosomal protein N' [priA]. 50 781 24.563 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 THIMO_RS11465 52bb13824341270aa84123c8d08941e1 782 Gene3D G3DSA:3.40.50.300 247 428 8.1E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 197 215 1.3E-40 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 122 140 1.3E-40 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 154 168 1.3E-40 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 267 285 1.3E-40 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 344 368 1.3E-40 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 22 555 7.7E-106 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 Pfam PF08345 Flagellar M-ring protein C-terminal 254 420 2.8E-47 T 23-04-2016 IPR013556 Flagellar M-ring C-terminal THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PANTHER PTHR30046 1 555 1.4E-160 T 23-04-2016 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 Pfam PF01514 Secretory protein of YscJ/FliF family 31 221 1.6E-67 T 23-04-2016 IPR006182 Secretory protein YscJ/FliF THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PIRSF PIRSF004862 6 555 5.2E-154 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 THIMO_RS01295 e3c92cff508b074cd3a83fa859d64a30 555 PANTHER PTHR30046:SF0 1 555 1.4E-160 T 23-04-2016 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 5.0E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 5.0E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 PANTHER PTHR24423:SF543 188 453 5.5E-32 T 23-04-2016 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 Gene3D G3DSA:3.30.565.10 314 454 3.8E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 454 5.3E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 SUPERFAMILY SSF47384 229 297 1.16E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 SUPERFAMILY SSF55874 311 453 4.45E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 PANTHER PTHR24423 188 453 5.5E-32 T 23-04-2016 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 Gene3D G3DSA:1.10.287.130 239 296 1.2E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS08220 fd87b37c1580991b2e68a3c73349acdc 456 SMART SM00387 351 456 5.4E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 5.1E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 7.1E-8 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 7.1E-8 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 7.1E-8 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 Gene3D G3DSA:1.20.5.890 1 42 1.5E-17 T 23-04-2016 THIMO_RS14240 e2d148862d79fa05c99007588bd52707 64 SUPERFAMILY SSF56918 1 47 2.15E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SMART SM00642 159 570 6.2E-10 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 PANTHER PTHR10357:SF74 3 581 1.5E-267 T 23-04-2016 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 PANTHER PTHR10357:SF74 608 693 1.5E-267 T 23-04-2016 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 10 666 3.2E-203 T 23-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Gene3D G3DSA:3.20.20.80 153 578 7.7E-122 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Gene3D G3DSA:2.60.40.1180 591 693 2.9E-19 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF81296 10 147 7.56E-28 T 23-04-2016 IPR014756 Immunoglobulin E-set THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 16 107 6.0E-11 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF51445 134 473 1.28E-129 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF51445 502 577 1.28E-129 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF51011 593 693 5.75E-21 T 23-04-2016 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Gene3D G3DSA:2.60.40.10 10 152 4.3E-33 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 PANTHER PTHR10357 3 581 1.5E-267 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 PANTHER PTHR10357 608 693 1.5E-267 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Pfam PF00128 Alpha amylase, catalytic domain 177 277 4.5E-13 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS05260 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Pfam PF00128 Alpha amylase, catalytic domain 314 532 4.3E-5 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 PIRSF PIRSF000005 6 203 9.2E-34 T 23-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 Gene3D G3DSA:1.10.760.10 110 203 1.4E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 SUPERFAMILY SSF46626 38 154 5.1E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 PANTHER PTHR33751:SF3 34 203 9.0E-17 T 23-04-2016 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 PANTHER PTHR33751 34 203 9.0E-17 T 23-04-2016 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 102 1.1E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS10710 7661c49a43b1b661e7e6f9d33f07e469 203 Gene3D G3DSA:1.10.760.10 34 105 9.0E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 280 386 1.5E-41 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 PANTHER PTHR19271 5 408 7.0E-230 T 23-04-2016 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 Gene3D G3DSA:1.20.810.10 10 406 2.1E-157 T 23-04-2016 IPR027387 Cytochrome b/b6-like domain THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 PIRSF PIRSF038885 1 410 1.3E-163 T 23-04-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 SUPERFAMILY SSF81648 283 403 3.49E-30 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 Pfam PF00033 Cytochrome b/b6/petB 28 214 5.5E-68 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 SUPERFAMILY SSF81342 14 282 5.02E-98 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS07875 319b5fb4e13476aedf999e468412cc4d 410 PANTHER PTHR19271:SF9 5 408 7.0E-230 T 23-04-2016 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 PANTHER PTHR30109:SF0 1 291 6.2E-140 T 23-04-2016 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 Gene3D G3DSA:3.40.50.2030 140 298 7.6E-62 T 23-04-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 PANTHER PTHR30109 1 291 6.2E-140 T 23-04-2016 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 2 305 1.7E-126 T 23-04-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 Gene3D G3DSA:3.40.50.2030 2 139 5.3E-49 T 23-04-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 Pfam PF03063 Prismane/CO dehydrogenase family 3 295 4.5E-90 T 23-04-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS08265 b721f402841258ed27c13f624481d8fa 310 SUPERFAMILY SSF56821 2 294 1.19E-104 T 23-04-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 THIMO_RS10620 cb69c61e5cf7e971fc3df9bff8e96baf 69 Pfam PF11154 Protein of unknown function (DUF2934) 27 62 4.6E-14 T 23-04-2016 IPR021327 Protein of unknown function DUF2934 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 5.6E-21 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 4.8E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 4.8E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 4.8E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 PANTHER PTHR30126:SF11 13 314 1.1E-73 T 23-04-2016 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 SUPERFAMILY SSF53850 103 306 2.44E-39 T 23-04-2016 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 Gene3D G3DSA:1.10.10.10 14 93 1.2E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 Gene3D G3DSA:3.40.190.10 190 270 5.0E-21 T 23-04-2016 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 Pfam PF03466 LysR substrate binding domain 102 300 2.0E-37 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 Gene3D G3DSA:3.40.190.10 102 189 2.6E-17 T 23-04-2016 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 PANTHER PTHR30126 13 314 1.1E-73 T 23-04-2016 THIMO_RS08865 815db0db62c6c075a60520b9d29d9383 326 SUPERFAMILY SSF46785 14 121 4.54E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00120 2e7b1fae4b768aa249682650882d56c5 387 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 26 382 4.0E-31 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase THIMO_RS00120 2e7b1fae4b768aa249682650882d56c5 387 SUPERFAMILY SSF53383 42 214 7.2E-37 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS00120 2e7b1fae4b768aa249682650882d56c5 387 SUPERFAMILY SSF53383 247 385 7.2E-37 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS00120 2e7b1fae4b768aa249682650882d56c5 387 PANTHER PTHR30244 246 291 3.6E-13 T 23-04-2016 THIMO_RS00120 2e7b1fae4b768aa249682650882d56c5 387 PANTHER PTHR30244 71 206 3.6E-13 T 23-04-2016 THIMO_RS00120 2e7b1fae4b768aa249682650882d56c5 387 Gene3D G3DSA:3.40.640.10 30 195 1.7E-30 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS08780 654488314a87f929572f10eaf86d14fd 299 PANTHER PTHR11918 6 216 2.0E-67 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS08780 654488314a87f929572f10eaf86d14fd 299 Pfam PF04055 Radical SAM superfamily 26 188 5.1E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS08780 654488314a87f929572f10eaf86d14fd 299 SMART SM00729 21 238 3.8E-25 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS08780 654488314a87f929572f10eaf86d14fd 299 SUPERFAMILY SSF102114 4 243 5.89E-32 T 23-04-2016 THIMO_RS08780 654488314a87f929572f10eaf86d14fd 299 PANTHER PTHR11918:SF47 6 216 2.0E-67 T 23-04-2016 THIMO_RS08780 654488314a87f929572f10eaf86d14fd 299 Gene3D G3DSA:3.80.30.20 23 211 1.6E-21 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS17295 ddf32ad78502d10dc5055f0e8beec5f5 193 PANTHER PTHR35812 44 181 7.1E-14 T 23-04-2016 THIMO_RS17295 ddf32ad78502d10dc5055f0e8beec5f5 193 Pfam PF07603 Protein of unknown function (DUF1566) 51 178 1.0E-30 T 23-04-2016 IPR011460 Protein of unknown function DUF1566 THIMO_RS17295 ddf32ad78502d10dc5055f0e8beec5f5 193 PANTHER PTHR35812:SF2 44 181 7.1E-14 T 23-04-2016 THIMO_RS18100 660cdb539d616f4693709ea6c5e144db 371 PANTHER PTHR30582:SF2 72 217 2.9E-28 T 23-04-2016 THIMO_RS18100 660cdb539d616f4693709ea6c5e144db 371 Pfam PF03734 L,D-transpeptidase catalytic domain 80 217 1.2E-19 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS18100 660cdb539d616f4693709ea6c5e144db 371 Gene3D G3DSA:2.40.440.10 157 218 1.8E-19 T 23-04-2016 THIMO_RS18100 660cdb539d616f4693709ea6c5e144db 371 Gene3D G3DSA:2.40.440.10 79 123 1.8E-19 T 23-04-2016 THIMO_RS18100 660cdb539d616f4693709ea6c5e144db 371 PANTHER PTHR30582 72 217 2.9E-28 T 23-04-2016 THIMO_RS18100 660cdb539d616f4693709ea6c5e144db 371 SUPERFAMILY SSF141523 80 217 5.23E-25 T 23-04-2016 THIMO_RS09330 2c6b35ec108d0c29b879506c9e8ab510 780 Pfam PF07793 Protein of unknown function (DUF1631) 16 763 8.6E-189 T 23-04-2016 IPR012434 Protein of unknown function DUF1631 THIMO_RS05065 83ff39a8347577b914d62d99c62ce5fd 261 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 10 241 3.2E-69 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 THIMO_RS05065 83ff39a8347577b914d62d99c62ce5fd 261 Gene3D G3DSA:3.40.1280.10 11 168 3.3E-35 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal THIMO_RS05065 83ff39a8347577b914d62d99c62ce5fd 261 PIRSF PIRSF004808 8 247 4.9E-69 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 THIMO_RS05065 83ff39a8347577b914d62d99c62ce5fd 261 PANTHER PTHR12029 11 178 3.1E-36 T 23-04-2016 THIMO_RS05065 83ff39a8347577b914d62d99c62ce5fd 261 Pfam PF00588 SpoU rRNA Methylase family 12 161 3.2E-32 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 THIMO_RS05065 83ff39a8347577b914d62d99c62ce5fd 261 SUPERFAMILY SSF75217 11 171 3.27E-37 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases THIMO_RS10520 68cc044b1917bb16cbb144bb829b8fd6 114 SUPERFAMILY SSF47413 57 112 5.09E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS10520 68cc044b1917bb16cbb144bb829b8fd6 114 Pfam PF01381 Helix-turn-helix 58 110 2.1E-15 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS10520 68cc044b1917bb16cbb144bb829b8fd6 114 Gene3D G3DSA:3.40.1620.10 8 30 2.0E-4 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS10520 68cc044b1917bb16cbb144bb829b8fd6 114 PANTHER PTHR10245 57 112 4.5E-12 T 23-04-2016 THIMO_RS10520 68cc044b1917bb16cbb144bb829b8fd6 114 SMART SM00530 57 112 9.0E-16 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS10520 68cc044b1917bb16cbb144bb829b8fd6 114 Gene3D G3DSA:1.10.260.40 58 112 6.8E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS10020 67b1fb3975ebe20e1a74263923e7d988 107 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 25 103 4.7E-35 T 23-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 THIMO_RS10020 67b1fb3975ebe20e1a74263923e7d988 107 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 5 102 29.155 T 23-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS THIMO_RS10020 67b1fb3975ebe20e1a74263923e7d988 107 Gene3D G3DSA:3.30.1390.10 9 107 1.5E-45 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like THIMO_RS10020 67b1fb3975ebe20e1a74263923e7d988 107 PANTHER PTHR33473 6 105 5.8E-41 T 23-04-2016 THIMO_RS10020 67b1fb3975ebe20e1a74263923e7d988 107 SUPERFAMILY SSF54736 22 106 2.88E-33 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.7E-15 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:1.10.8.60 667 745 5.7E-28 T 23-04-2016 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 SUPERFAMILY SSF52540 169 424 1.25E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:3.40.50.300 445 666 6.3E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:1.10.1780.10 1 141 7.9E-45 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 SMART SM00382 489 638 7.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 SMART SM00382 208 353 9.4E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF07724 AAA domain (Cdc48 subfamily) 488 648 2.3E-47 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 SMART SM01086 655 744 5.1E-34 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:1.10.8.60 353 436 7.2E-31 T 23-04-2016 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 736 0.0 T 23-04-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 326 8.7E-12 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 520 538 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 304 316 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 PANTHER PTHR11638 1 747 0.0 T 23-04-2016 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 PANTHER PTHR11638:SF111 1 747 0.0 T 23-04-2016 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 597 611 8.8E-37 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 535 553 8.8E-37 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 493 511 8.8E-37 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 564 582 8.8E-37 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 SUPERFAMILY SSF81923 1 141 1.57E-59 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:3.40.50.300 174 351 1.7E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 655 735 1.8E-22 T 23-04-2016 IPR019489 Clp ATPase, C-terminal THIMO_RS10015 724afe624e3f3ee057ba1a154b5528f6 750 SUPERFAMILY SSF52540 439 740 2.29E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12990 92b928996c4cf626ee74ddc4d95151ca 140 SUPERFAMILY SSF88723 2 126 8.83E-8 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS12990 92b928996c4cf626ee74ddc4d95151ca 140 PANTHER PTHR34610:SF3 1 127 3.1E-24 T 23-04-2016 THIMO_RS12990 92b928996c4cf626ee74ddc4d95151ca 140 PANTHER PTHR34610 1 127 3.1E-24 T 23-04-2016 THIMO_RS12990 92b928996c4cf626ee74ddc4d95151ca 140 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 2 118 5.4E-16 T 23-04-2016 IPR002850 PIN family, putative toxin-antitoxin system toxin component THIMO_RS12990 92b928996c4cf626ee74ddc4d95151ca 140 Pfam PF13470 PIN domain 2 113 3.9E-17 T 23-04-2016 IPR002716 PIN domain THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 PANTHER PTHR34990:SF1 2 247 4.6E-87 T 23-04-2016 THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 Pfam PF00149 Calcineurin-like phosphoesterase 18 213 5.5E-7 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 253 100.724 T 23-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 Gene3D G3DSA:3.60.21.10 187 217 1.2E-17 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 Gene3D G3DSA:3.60.21.10 18 139 1.2E-17 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 SUPERFAMILY SSF56300 18 248 9.25E-24 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 18 245 1.0E-84 T 23-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 THIMO_RS01600 2d24e46791761290ad8c5b8563749f55 253 PANTHER PTHR34990 2 247 4.6E-87 T 23-04-2016 THIMO_RS17580 4e9ed2ed03eef3ac473fa6af1fdbb79b 223 SUPERFAMILY SSF53448 1 217 2.25E-57 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS17580 4e9ed2ed03eef3ac473fa6af1fdbb79b 223 PANTHER PTHR22572:SF15 2 217 2.9E-46 T 23-04-2016 THIMO_RS17580 4e9ed2ed03eef3ac473fa6af1fdbb79b 223 Gene3D G3DSA:3.90.550.10 1 218 7.6E-53 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS17580 4e9ed2ed03eef3ac473fa6af1fdbb79b 223 Pfam PF00483 Nucleotidyl transferase 2 120 7.9E-20 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS17580 4e9ed2ed03eef3ac473fa6af1fdbb79b 223 PANTHER PTHR22572 2 217 2.9E-46 T 23-04-2016 THIMO_RS00610 967a697bfb013ad40817f1ba02a5b306 336 Gene3D G3DSA:3.90.550.10 9 186 2.3E-26 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS00610 967a697bfb013ad40817f1ba02a5b306 336 Pfam PF00535 Glycosyl transferase family 2 14 179 2.3E-27 T 23-04-2016 IPR001173 Glycosyltransferase 2-like THIMO_RS00610 967a697bfb013ad40817f1ba02a5b306 336 PANTHER PTHR10859 1 316 1.6E-99 T 23-04-2016 THIMO_RS00610 967a697bfb013ad40817f1ba02a5b306 336 PANTHER PTHR10859:SF49 1 316 1.6E-99 T 23-04-2016 THIMO_RS00610 967a697bfb013ad40817f1ba02a5b306 336 SUPERFAMILY SSF53448 6 260 4.26E-45 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 TIGRFAM TIGR00433 bioB: biotin synthase 19 314 8.3E-122 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 PANTHER PTHR22976 11 320 5.7E-154 T 23-04-2016 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 PIRSF PIRSF001619 1 322 4.1E-128 T 23-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 SUPERFAMILY SSF102114 9 314 1.02E-91 T 23-04-2016 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 Hamap MF_01694 Biotin synthase [bioB]. 9 317 42.829 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 Pfam PF04055 Radical SAM superfamily 54 201 6.8E-14 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 SMART SM00876 224 316 2.3E-39 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 SMART SM00729 47 259 2.2E-34 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 224 314 1.0E-17 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 Gene3D G3DSA:3.20.20.70 9 315 3.9E-100 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS14425 46a1ee134d0edb621b88fd6c8a5b6c02 339 PANTHER PTHR22976:SF1 11 320 5.7E-154 T 23-04-2016 THIMO_RS01440 cc1570591a04bf90d307effb4c695134 356 SUPERFAMILY SSF159245 24 349 2.48E-108 T 23-04-2016 THIMO_RS01440 cc1570591a04bf90d307effb4c695134 356 Pfam PF07143 CrtC N-terminal lipocalin domain 47 217 1.8E-53 T 23-04-2016 IPR010791 AttH domain THIMO_RS01440 cc1570591a04bf90d307effb4c695134 356 Gene3D G3DSA:2.40.370.10 223 351 1.7E-45 T 23-04-2016 IPR023374 AttH-like domain THIMO_RS01440 cc1570591a04bf90d307effb4c695134 356 Gene3D G3DSA:2.40.370.10 35 220 7.0E-65 T 23-04-2016 IPR023374 AttH-like domain THIMO_RS01440 cc1570591a04bf90d307effb4c695134 356 PANTHER PTHR38591 1 354 1.7E-87 T 23-04-2016 THIMO_RS01440 cc1570591a04bf90d307effb4c695134 356 Pfam PF17186 Lipocalin-like domain 221 349 1.2E-39 T 23-04-2016 IPR033451 AttH, lipocalin-like domain THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 Gene3D G3DSA:3.30.390.10 4 125 9.5E-53 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 Pfam PF03952 Enolase, N-terminal domain 4 134 2.6E-56 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 160 173 2.6E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 310 321 2.6E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 37 51 2.6E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 107 123 2.6E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 362 379 2.6E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 333 347 2.6E-45 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 ProSitePatterns PS00164 Enolase signature. 333 346 - T 23-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 423 6.2E-129 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 SMART SM01192 138 424 3.8E-215 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PANTHER PTHR11902 1 420 1.1E-249 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 SUPERFAMILY SSF51604 138 423 9.43E-124 T 23-04-2016 IPR029065 Enolase C-terminal domain-like THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 PIRSF PIRSF001400 1 424 4.0E-181 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 Gene3D G3DSA:3.20.20.120 128 423 7.9E-128 T 23-04-2016 IPR029065 Enolase C-terminal domain-like THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 SUPERFAMILY SSF54826 3 136 1.53E-52 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 SMART SM01193 4 134 2.4E-87 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 Hamap MF_00318 Enolase [eno]. 2 410 43.829 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS06335 5ef899cea999a84c35ad6c41f80d9cc1 425 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 4.0E-200 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 PIRSF PIRSF037442 35 325 8.3E-38 T 23-04-2016 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 Gene3D G3DSA:3.40.50.1820 48 312 5.8E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 PANTHER PTHR11614 47 334 2.0E-41 T 23-04-2016 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 Pfam PF12146 Serine aminopeptidase, S33 63 298 3.1E-55 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 140 153 5.2E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 254 268 5.2E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 107 5.2E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS13890 7df7e6fc772003f35882b25acaf6641d 339 SUPERFAMILY SSF53474 46 315 2.24E-39 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Pfam PF11987 Translation-initiation factor 2 710 814 2.6E-35 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:3.40.50.10050 725 803 1.2E-22 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:2.40.30.10 596 688 1.8E-23 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 922 17.598 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF52156 701 831 1.57E-35 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 346 396 3.8E-15 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:3.30.56.50 3 52 1.4E-19 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF46955 4 52 3.48E-10 T 23-04-2016 IPR009061 Putative DNA-binding domain THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Pfam PF00009 Elongation factor Tu GTP binding domain 429 585 7.7E-35 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 340 922 5.6E-262 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF52540 416 592 2.09E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF50447 826 921 4.52E-32 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 PANTHER PTHR23115 777 924 2.1E-209 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 PANTHER PTHR23115 406 752 2.1E-209 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 PANTHER PTHR23115:SF184 777 924 2.1E-209 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 PANTHER PTHR23115:SF184 406 752 2.1E-209 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF50447 597 679 7.78E-25 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 427 583 1.8E-32 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:2.40.30.10 826 922 5.6E-37 T 23-04-2016 THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 66 118 3.3E-18 T 23-04-2016 IPR013575 Initiation factor 2 associated domain, bacterial THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:3.40.50.300 418 584 1.0E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03365 be52c767afc951e579a2ec841cd033b8 924 ProSitePatterns PS01176 Initiation factor 2 signature. 875 897 - T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 313 2.7E-80 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 Pfam PF01479 S4 domain 22 68 2.0E-9 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 PANTHER PTHR11079:SF84 11 314 3.6E-118 T 23-04-2016 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 SUPERFAMILY SSF55174 21 73 1.43E-9 T 23-04-2016 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 SUPERFAMILY SSF55120 90 313 2.56E-61 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 Gene3D G3DSA:3.10.290.10 21 71 5.5E-7 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 PANTHER PTHR11079 11 314 3.6E-118 T 23-04-2016 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 SMART SM00363 22 82 1.6E-7 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS02510 e794bcab80eeaf8842f500a3e7cd0845 317 Pfam PF00849 RNA pseudouridylate synthase 102 250 1.5E-30 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 SUPERFAMILY SSF51556 2 256 6.62E-81 T 23-04-2016 IPR032466 Metal-dependent hydrolase THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 PANTHER PTHR10060:SF20 1 259 6.8E-118 T 23-04-2016 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 PANTHER PTHR10060 1 259 6.8E-118 T 23-04-2016 IPR001130 TatD family GO:0016788 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 PIRSF PIRSF005902 1 259 1.5E-71 T 23-04-2016 IPR001130 TatD family GO:0016788 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 Pfam PF01026 TatD related DNase 3 255 6.1E-73 T 23-04-2016 IPR001130 TatD family GO:0016788 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 Gene3D G3DSA:3.20.20.140 1 256 1.7E-81 T 23-04-2016 THIMO_RS11340 78edbb3d1b71f7377c58cb34eaa7855a 269 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 256 1.2E-77 T 23-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 THIMO_RS06355 df89c3eba30978492afb3b645580f551 367 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 11 350 27.508 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS06355 df89c3eba30978492afb3b645580f551 367 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 83 96 - T 23-04-2016 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS06355 df89c3eba30978492afb3b645580f551 367 SUPERFAMILY SSF55120 10 348 3.16E-92 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS06355 df89c3eba30978492afb3b645580f551 367 PANTHER PTHR13326 15 348 2.9E-63 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS06355 df89c3eba30978492afb3b645580f551 367 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 17 176 3.1E-40 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS06355 df89c3eba30978492afb3b645580f551 367 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 195 345 1.3E-21 T 23-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS06155 ff312cc8d92c64a958ca7842552dec32 234 Pfam PF13835 Domain of unknown function (DUF4194) 47 206 6.1E-41 T 23-04-2016 IPR025449 Protein of unknown function DUF4194 THIMO_RS01845 7a7de04a5e3a95be4df369d3ca7f38c0 195 Gene3D G3DSA:2.40.440.10 56 194 8.2E-21 T 23-04-2016 THIMO_RS01845 7a7de04a5e3a95be4df369d3ca7f38c0 195 Pfam PF03734 L,D-transpeptidase catalytic domain 57 193 2.1E-20 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS01845 7a7de04a5e3a95be4df369d3ca7f38c0 195 PANTHER PTHR36699 35 195 4.4E-50 T 23-04-2016 THIMO_RS01845 7a7de04a5e3a95be4df369d3ca7f38c0 195 SUPERFAMILY SSF141523 57 193 4.84E-23 T 23-04-2016 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 Gene3D G3DSA:1.10.760.10 88 236 3.9E-34 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 Gene3D G3DSA:1.10.760.10 22 41 3.9E-34 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 PANTHER PTHR10422 86 200 4.3E-66 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 81 215 4.1E-70 T 23-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 SUPERFAMILY SSF46626 88 233 5.72E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 SUPERFAMILY SSF46626 23 41 5.72E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 PANTHER PTHR10422:SF23 86 200 4.3E-66 T 23-04-2016 THIMO_RS06410 4cc2dd3ae42ccce0652f49fe9e345d99 249 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 79 215 8.0E-67 T 23-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO THIMO_RS12605 1dc1838240b71de10b3c95ea15b5faab 159 SUPERFAMILY SSF75169 4 50 2.19E-20 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS12605 1dc1838240b71de10b3c95ea15b5faab 159 SUPERFAMILY SSF75169 101 157 2.19E-20 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS12605 1dc1838240b71de10b3c95ea15b5faab 159 Pfam PF13686 DsrE/DsrF/DrsH-like family 3 157 3.4E-56 T 23-04-2016 IPR032836 DsrE/DsrF/DrsH-like family THIMO_RS12605 1dc1838240b71de10b3c95ea15b5faab 159 PANTHER PTHR34655:SF2 2 159 7.0E-51 T 23-04-2016 THIMO_RS12605 1dc1838240b71de10b3c95ea15b5faab 159 Gene3D G3DSA:3.40.1260.10 2 159 1.0E-52 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS12605 1dc1838240b71de10b3c95ea15b5faab 159 PANTHER PTHR34655 2 159 7.0E-51 T 23-04-2016 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 235 252 4.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 159 172 4.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 345 371 4.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 253 269 4.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 183 211 4.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 20 203 1.1E-60 T 23-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 Gene3D G3DSA:3.30.360.10 203 505 1.3E-111 T 23-04-2016 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 SUPERFAMILY SSF55347 193 505 6.54E-107 T 23-04-2016 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 SUPERFAMILY SSF51735 12 206 5.51E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 205 505 1.8E-109 T 23-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 16 506 1.3E-182 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 193 199 - T 23-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 Gene3D G3DSA:3.40.50.720 17 202 3.2E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PANTHER PTHR23429:SF0 16 511 2.8E-218 T 23-04-2016 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PANTHER PTHR23429 16 511 2.8E-218 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 16 506 79.447 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS14450 ac3898761a365c77b5cc55b7ee4073ba 519 PIRSF PIRSF000110 4 508 3.6E-168 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 Gene3D G3DSA:1.10.1060.10 17 101 2.3E-15 T 23-04-2016 THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 73 84 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 29 40 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 PANTHER PTHR11921 26 103 8.5E-14 T 23-04-2016 THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 PANTHER PTHR11921:SF25 26 103 8.5E-14 T 23-04-2016 THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 SUPERFAMILY SSF46548 21 99 2.96E-18 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS01190 6e286ccf619cdbdf2c8acceeb02aabe9 135 Pfam PF13187 4Fe-4S dicluster domain 28 86 4.8E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS01535 63e15beb8935fd633277d1523c7b6754 680 TIGRFAM TIGR02577 cas_TM1794_Cmr2: CRISPR-associated protein Cas10/Cmr2, subtype III-B 371 526 2.5E-27 T 23-04-2016 IPR013407 CRISPR-associated protein Crm2 THIMO_RS01535 63e15beb8935fd633277d1523c7b6754 680 Gene3D G3DSA:3.30.70.270 433 530 2.1E-4 T 23-04-2016 THIMO_RS01535 63e15beb8935fd633277d1523c7b6754 680 Pfam PF12469 CRISPR-associated protein 19 116 3.2E-14 T 23-04-2016 IPR024615 CRISPR-associated protein Crm2, N-terminal THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 700 733 56.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 556 589 100.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 508 541 180.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 652 685 45.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 268 301 220.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 412 445 32.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 748 781 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 604 637 56.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 364 397 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 316 349 190.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 460 493 32.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 PANTHER PTHR19959:SF146 265 778 1.5E-57 T 23-04-2016 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 380 428 9.0E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 614 667 3.0E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 229 379 3.1E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 429 539 6.8E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 668 780 3.6E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 505 640 7.91E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 703 760 7.91E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 367 442 7.91E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 PANTHER PTHR19959 265 778 1.5E-57 T 23-04-2016 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 318 350 0.016 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 366 400 6.0E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 414 448 3.7E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 606 640 5.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 654 688 3.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 558 592 2.6E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 702 736 5.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 270 304 0.0084 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 552 613 1.6E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 415 534 3.07E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 650 681 3.07E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13424 Tetratricopeptide repeat 459 538 3.3E-7 T 23-04-2016 THIMO_RS16510 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 275 397 1.29E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06140 0b29683ce113232615f7e82c37812558 128 PANTHER PTHR36173:SF2 2 128 5.5E-37 T 23-04-2016 THIMO_RS06140 0b29683ce113232615f7e82c37812558 128 SUPERFAMILY SSF88723 3 127 3.92E-18 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS06140 0b29683ce113232615f7e82c37812558 128 Pfam PF01850 PIN domain 3 122 7.1E-11 T 23-04-2016 IPR002716 PIN domain THIMO_RS06140 0b29683ce113232615f7e82c37812558 128 PANTHER PTHR36173 2 128 5.5E-37 T 23-04-2016 THIMO_RS14585 68a3f790fa5d305220f22688fa865877 165 SUPERFAMILY SSF46689 1 67 6.27E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14585 68a3f790fa5d305220f22688fa865877 165 Gene3D G3DSA:1.10.10.10 62 106 3.6E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14585 68a3f790fa5d305220f22688fa865877 165 Gene3D G3DSA:1.10.10.60 5 61 3.2E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS14585 68a3f790fa5d305220f22688fa865877 165 Pfam PF01527 Transposase 3 55 1.0E-9 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS14585 68a3f790fa5d305220f22688fa865877 165 Pfam PF01527 Transposase 60 135 2.1E-6 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 PANTHER PTHR24567 18 232 3.9E-41 T 23-04-2016 THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 Gene3D G3DSA:1.10.10.10 159 232 8.0E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 Pfam PF13545 Crp-like helix-turn-helix domain 162 230 3.4E-12 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 SUPERFAMILY SSF51206 18 154 4.58E-32 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 Pfam PF00027 Cyclic nucleotide-binding domain 43 128 1.3E-17 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 SMART SM00100 23 142 1.1E-21 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 SUPERFAMILY SSF46785 158 227 2.12E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 PANTHER PTHR24567:SF30 18 232 3.9E-41 T 23-04-2016 THIMO_RS08260 22870de87a5d449671450e6f4c535a63 238 Gene3D G3DSA:2.60.120.10 19 156 4.3E-32 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS09680 4f20830d8f5869627d993652d1c60475 342 Pfam PF01609 Transposase DDE domain 138 311 4.9E-27 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS09680 4f20830d8f5869627d993652d1c60475 342 Pfam PF05598 Transposase domain (DUF772) 50 125 8.6E-18 T 23-04-2016 IPR008490 Transposase InsH, N-terminal THIMO_RS09680 4f20830d8f5869627d993652d1c60475 342 PANTHER PTHR35604:SF2 1 325 2.6E-143 T 23-04-2016 THIMO_RS09680 4f20830d8f5869627d993652d1c60475 342 PANTHER PTHR35604 1 325 2.6E-143 T 23-04-2016 THIMO_RS18560 933071ce5a5dacf998d9a304580238dd 206 Pfam PF09445 RNA cap guanine-N2 methyltransferase 44 171 4.3E-9 T 23-04-2016 IPR019012 RNA cap guanine-N2 methyltransferase GO:0001510|GO:0008168|GO:0009452 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- THIMO_RS18560 933071ce5a5dacf998d9a304580238dd 206 Gene3D G3DSA:3.40.50.150 32 121 9.0E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18560 933071ce5a5dacf998d9a304580238dd 206 SUPERFAMILY SSF53335 7 126 1.39E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS10970 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 Pfam PF01966 HD domain 27 149 2.0E-23 T 23-04-2016 IPR006674 HD domain THIMO_RS10970 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 SMART SM00471 23 158 3.0E-16 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS10970 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 Gene3D G3DSA:1.10.3210.10 22 190 1.4E-27 T 23-04-2016 IPR006674 HD domain THIMO_RS10970 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 TIGRFAM TIGR00277 HDIG: HDIG domain 25 117 3.6E-9 T 23-04-2016 IPR006675 HDIG domain THIMO_RS10970 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 SUPERFAMILY SSF109604 18 186 2.24E-40 T 23-04-2016 THIMO_RS10295 208c025058bb62324429de6b0a7fada6 407 SMART SM00327 55 237 2.6E-15 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS10295 208c025058bb62324429de6b0a7fada6 407 Gene3D G3DSA:3.40.50.410 57 242 1.6E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS10295 208c025058bb62324429de6b0a7fada6 407 SUPERFAMILY SSF53300 57 230 8.75E-24 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS10295 208c025058bb62324429de6b0a7fada6 407 Pfam PF13519 von Willebrand factor type A domain 59 171 6.6E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 PANTHER PTHR30314:SF3 1 392 2.3E-200 T 23-04-2016 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 SMART SM00864 13 205 1.5E-108 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 Pfam PF12327 FtsZ family, C-terminal domain 222 316 7.6E-37 T 23-04-2016 IPR024757 Cell division protein FtsZ, C-terminal THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 346 37.733 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 Gene3D G3DSA:3.40.50.1440 14 214 2.5E-88 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 PANTHER PTHR30314 1 392 2.3E-200 T 23-04-2016 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 172 3.9E-37 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 98 118 1.7E-50 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 212 233 1.7E-50 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 189 211 1.7E-50 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 126 147 1.7E-50 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 SUPERFAMILY SSF55307 204 319 9.39E-43 T 23-04-2016 IPR008280 Tubulin/FtsZ, C-terminal THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 SMART SM00865 207 325 8.7E-58 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 Gene3D G3DSA:3.30.1330.20 215 320 6.6E-47 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 326 2.2E-130 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 THIMO_RS14750 c022bd1e81752090d108ebde5c4cfbb9 394 SUPERFAMILY SSF52490 13 208 3.14E-67 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 Pfam PF01063 Amino-transferase class IV 40 262 3.0E-39 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 Gene3D G3DSA:3.20.10.10 139 272 5.1E-36 T 23-04-2016 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 PANTHER PTHR11825:SF55 27 262 6.0E-60 T 23-04-2016 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 SUPERFAMILY SSF56752 20 271 2.49E-61 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 Gene3D G3DSA:3.30.470.10 19 120 4.8E-29 T 23-04-2016 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 PANTHER PTHR11825 27 262 6.0E-60 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 THIMO_RS11365 e82bf8d6bfe6695e5d8646dc533a09a2 291 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 19 267 8.8E-78 T 23-04-2016 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543|UniPathway: UPA00077 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 PANTHER PTHR11002 1 203 3.6E-65 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 Pfam PF00484 Carbonic anhydrase 45 198 4.1E-36 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 50 57 - T 23-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 SUPERFAMILY SSF53056 3 203 9.29E-51 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 PANTHER PTHR11002:SF17 1 203 3.6E-65 T 23-04-2016 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 Gene3D G3DSA:3.40.1050.10 3 204 1.7E-52 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS03420 c975ae3fdca11c959cbf0c2f4d2ee989 209 SMART SM00947 38 203 7.3E-48 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 THIMO_RS04110 c8039cbd7d5ff0898a057d82999ce5eb 258 PANTHER PTHR11863 79 218 2.0E-25 T 23-04-2016 THIMO_RS04110 c8039cbd7d5ff0898a057d82999ce5eb 258 PANTHER PTHR11863:SF2 79 218 2.0E-25 T 23-04-2016 THIMO_RS04110 c8039cbd7d5ff0898a057d82999ce5eb 258 Pfam PF04116 Fatty acid hydroxylase superfamily 83 219 1.3E-30 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 THIMO_RS01375 40f4a612a8cb166470d2e027f0109f27 296 PANTHER PTHR13696:SF3 3 275 8.1E-86 T 23-04-2016 THIMO_RS01375 40f4a612a8cb166470d2e027f0109f27 296 PANTHER PTHR13696 3 275 8.1E-86 T 23-04-2016 THIMO_RS01375 40f4a612a8cb166470d2e027f0109f27 296 Gene3D G3DSA:3.40.50.300 24 266 8.6E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01375 40f4a612a8cb166470d2e027f0109f27 296 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 26 209 7.5E-20 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS01375 40f4a612a8cb166470d2e027f0109f27 296 SUPERFAMILY SSF52540 24 277 4.14E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01375 40f4a612a8cb166470d2e027f0109f27 296 PIRSF PIRSF003092 5 281 4.6E-71 T 23-04-2016 IPR025501 ATP binding protein MinD THIMO_RS14725 9d27ed17e3b86258c04eb573ba9519f9 187 Gene3D G3DSA:1.20.950.20 88 170 7.2E-4 T 23-04-2016 THIMO_RS14725 9d27ed17e3b86258c04eb573ba9519f9 187 SUPERFAMILY SSF81342 5 176 2.35E-24 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS14725 9d27ed17e3b86258c04eb573ba9519f9 187 Pfam PF01292 Prokaryotic cytochrome b561 10 178 1.2E-22 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS14725 9d27ed17e3b86258c04eb573ba9519f9 187 PANTHER PTHR30529:SF5 2 182 4.8E-32 T 23-04-2016 THIMO_RS14725 9d27ed17e3b86258c04eb573ba9519f9 187 PANTHER PTHR30529 2 182 4.8E-32 T 23-04-2016 THIMO_RS16845 88d43bacb54cc46ce8772cfdf7ca29a5 160 ProSitePatterns PS00550 Hemerythrin family signature. 78 101 - T 23-04-2016 IPR016131 Haemerythrin, iron-binding site GO:0046872 THIMO_RS16845 88d43bacb54cc46ce8772cfdf7ca29a5 160 Pfam PF01814 Hemerythrin HHE cation binding domain 36 119 3.2E-8 T 23-04-2016 IPR012312 Haemerythrin-like THIMO_RS16845 88d43bacb54cc46ce8772cfdf7ca29a5 160 SUPERFAMILY SSF47188 22 152 1.96E-23 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS16845 88d43bacb54cc46ce8772cfdf7ca29a5 160 Gene3D G3DSA:1.20.120.50 22 152 4.6E-25 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS16845 88d43bacb54cc46ce8772cfdf7ca29a5 160 PANTHER PTHR37164 23 154 1.8E-18 T 23-04-2016 THIMO_RS16845 88d43bacb54cc46ce8772cfdf7ca29a5 160 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 26 152 8.2E-23 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 PANTHER PTHR11046 4 476 1.2E-198 T 23-04-2016 THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 PANTHER PTHR11046:SF2 4 476 1.2E-198 T 23-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 Pfam PF08411 Exonuclease C-terminal 206 472 3.9E-89 T 23-04-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 Gene3D G3DSA:3.30.420.10 3 194 9.8E-73 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 SUPERFAMILY SSF53098 4 472 9.11E-106 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 Pfam PF00929 Exonuclease 7 187 7.4E-19 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS10190 716bfdb37e7e8abd6c9cd60acd5c849d 478 PIRSF PIRSF000977 1 476 1.1E-190 T 23-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 THIMO_RS14730 20dd1512d3e5e71ebfae4ec0332733f3 421 Pfam PF07690 Major Facilitator Superfamily 37 372 2.5E-19 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 THIMO_RS14730 20dd1512d3e5e71ebfae4ec0332733f3 421 PANTHER PTHR12778 7 404 9.6E-103 T 23-04-2016 THIMO_RS14730 20dd1512d3e5e71ebfae4ec0332733f3 421 Gene3D G3DSA:1.20.1250.20 222 405 8.8E-13 T 23-04-2016 THIMO_RS14730 20dd1512d3e5e71ebfae4ec0332733f3 421 Gene3D G3DSA:1.20.1250.20 21 203 1.9E-10 T 23-04-2016 THIMO_RS14730 20dd1512d3e5e71ebfae4ec0332733f3 421 SUPERFAMILY SSF103473 18 413 1.31E-33 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 Pfam PF14561 Tetratricopeptide repeat 200 287 6.4E-28 T 23-04-2016 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 Gene3D G3DSA:1.25.40.10 112 194 5.2E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 SUPERFAMILY SSF48452 118 249 1.22E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 PRINTS PR00421 Thioredoxin family signature 76 87 5.7E-7 T 23-04-2016 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 PRINTS PR00421 Thioredoxin family signature 28 36 5.7E-7 T 23-04-2016 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 PRINTS PR00421 Thioredoxin family signature 36 45 5.7E-7 T 23-04-2016 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 Gene3D G3DSA:1.25.40.10 200 287 7.6E-29 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 Gene3D G3DSA:3.40.30.10 4 111 9.8E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 SUPERFAMILY SSF52833 5 113 1.02E-36 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 Pfam PF14559 Tetratricopeptide repeat 126 192 6.3E-9 T 23-04-2016 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 PANTHER PTHR10438 11 122 2.3E-38 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 TIGRFAM TIGR01068 thioredoxin: thioredoxin 13 111 2.9E-30 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS11205 6f62666f26378b71d86f8d3c717e7436 287 Pfam PF00085 Thioredoxin 8 111 2.9E-27 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 SUPERFAMILY SSF47598 6 52 3.56E-12 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 Hamap MF_00476 Putative nickel-responsive regulator [nikR]. 7 137 28.064 T 23-04-2016 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 Gene3D G3DSA:3.30.70.1150 55 135 4.7E-32 T 23-04-2016 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 Gene3D G3DSA:1.10.1220.10 8 51 5.6E-17 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 PANTHER PTHR34719 4 140 1.2E-40 T 23-04-2016 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 SUPERFAMILY SSF55021 57 134 5.49E-25 T 23-04-2016 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 Pfam PF08753 NikR C terminal nickel binding domain 59 133 5.9E-30 T 23-04-2016 IPR014864 Transcription factor, NikR, nickel binding C-terminal THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 PANTHER PTHR34719:SF2 4 140 1.2E-40 T 23-04-2016 THIMO_RS13400 fca614637a1a76c58a614d2d45764c25 140 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 46 6.1E-9 T 23-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 THIMO_RS08325 b77d9ccb300a1968dc1d35bd7fe81128 161 PANTHER PTHR11527:SF96 22 160 5.4E-31 T 23-04-2016 THIMO_RS08325 b77d9ccb300a1968dc1d35bd7fe81128 161 SUPERFAMILY SSF49764 27 160 7.07E-37 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS08325 b77d9ccb300a1968dc1d35bd7fe81128 161 Pfam PF00011 Hsp20/alpha crystallin family 62 160 3.8E-22 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain THIMO_RS08325 b77d9ccb300a1968dc1d35bd7fe81128 161 Gene3D G3DSA:2.60.40.790 16 160 1.7E-39 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS08325 b77d9ccb300a1968dc1d35bd7fe81128 161 PANTHER PTHR11527 22 160 5.4E-31 T 23-04-2016 IPR031107 Small heat shock protein HSP20 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 SUPERFAMILY SSF53807 8 404 1.28E-71 T 23-04-2016 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 TIGRFAM TIGR02014 BchZ: chlorophyllide reductase subunit Z 2 469 8.6E-233 T 23-04-2016 IPR010244 Chlorophyllide reductase subunit Z GO:0016730|GO:0030494|GO:0055114 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 PANTHER PTHR33712 2 479 3.8E-70 T 23-04-2016 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Gene3D G3DSA:3.40.50.1980 145 250 9.0E-14 T 23-04-2016 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 12 392 1.3E-35 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 PANTHER PTHR33712:SF7 2 479 3.8E-70 T 23-04-2016 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Gene3D G3DSA:3.40.50.1980 12 101 2.5E-4 T 23-04-2016 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 422 474 1.7E-12 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS14285 ff2a0a044a815b347e0e1a2fb6cea0f9 483 PIRSF PIRSF000163 1 479 1.2E-122 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS11400 661e092829240f48677a0afc831a3c7a 59 SUPERFAMILY SSF57829 2 55 1.95E-18 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 THIMO_RS11400 661e092829240f48677a0afc831a3c7a 59 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.527 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 THIMO_RS11400 661e092829240f48677a0afc831a3c7a 59 Pfam PF01783 Ribosomal L32p protein family 2 56 1.4E-20 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 THIMO_RS11400 661e092829240f48677a0afc831a3c7a 59 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 2.5E-19 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 THIMO_RS11400 661e092829240f48677a0afc831a3c7a 59 PANTHER PTHR35534 1 59 4.2E-29 T 23-04-2016 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 52.807 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 353 5.3E-138 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 5.2E-157 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 SMART SM01329 4 353 2.2E-210 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 SUPERFAMILY SSF53659 3 357 6.53E-124 T 23-04-2016 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 Gene3D G3DSA:3.40.718.10 3 357 1.3E-133 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 PANTHER PTHR11835:SF35 2 357 5.8E-203 T 23-04-2016 THIMO_RS12690 28e828ed1822161e513b819657d38b2a 361 PANTHER PTHR11835 2 357 5.8E-203 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 THIMO_RS09390 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 PANTHER PTHR35089 2 171 4.7E-32 T 23-04-2016 THIMO_RS09390 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 SUPERFAMILY SSF111384 22 167 3.79E-30 T 23-04-2016 IPR024930 Skp domain THIMO_RS09390 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 SMART SM00935 11 167 2.8E-43 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 THIMO_RS09390 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 Gene3D G3DSA:3.30.910.20 97 166 4.8E-20 T 23-04-2016 THIMO_RS09390 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 Gene3D G3DSA:3.30.910.20 13 59 4.8E-20 T 23-04-2016 THIMO_RS09390 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 Pfam PF03938 Outer membrane protein (OmpH-like) 8 166 4.1E-30 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 5.5E-24 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 23-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 PIRSF PIRSF005901 2 188 4.8E-71 T 23-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 SMART SM00841 131 186 1.5E-33 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Hamap MF_00141 Elongation factor P [efp]. 3 187 50.509 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 SUPERFAMILY SSF50104 2 63 1.05E-20 T 23-04-2016 IPR008991 Translation protein SH3-like domain THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 SMART SM01185 69 123 2.4E-27 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Gene3D G3DSA:2.40.50.140 130 187 8.3E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 SUPERFAMILY SSF50249 130 187 1.1E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Gene3D G3DSA:2.40.50.140 66 129 2.2E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 1.7E-27 T 23-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.4E-26 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 3.3E-81 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 SUPERFAMILY SSF50249 69 128 8.14E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 Gene3D G3DSA:2.30.30.30 1 65 6.1E-31 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 THIMO_RS10645 d71924a7e99820bf5fa4c2cc97193fdd 190 PANTHER PTHR30053 1 188 4.3E-93 T 23-04-2016 THIMO_RS07450 4c7ec89b9ec3ee01632ab59095ec6eda 414 PANTHER PTHR36454 1 414 4.3E-137 T 23-04-2016 THIMO_RS07450 4c7ec89b9ec3ee01632ab59095ec6eda 414 Pfam PF06245 Protein of unknown function (DUF1015) 4 411 1.4E-124 T 23-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 THIMO_RS07450 4c7ec89b9ec3ee01632ab59095ec6eda 414 PIRSF PIRSF033563 1 414 5.6E-122 T 23-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 THIMO_RS07450 4c7ec89b9ec3ee01632ab59095ec6eda 414 PANTHER PTHR36454:SF1 1 414 4.3E-137 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Gene3D G3DSA:3.30.300.30 496 619 1.4E-22 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 57 1.6E-20 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 588 1.3E-23 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Gene3D G3DSA:3.40.50.980 55 240 1.2E-40 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 PANTHER PTHR24095:SF167 3 621 0.0 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 SUPERFAMILY SSF56801 3 622 2.62E-161 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 PANTHER PTHR24095 3 621 0.0 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Pfam PF00501 AMP-binding enzyme 66 500 9.0E-85 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 23-04-2016 IPR020845 AMP-binding, conserved site THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Gene3D G3DSA:2.30.38.10 417 493 2.9E-11 T 23-04-2016 THIMO_RS12795 03a443a74361fff3a1a9bc9825ccb745 631 Gene3D G3DSA:3.40.50.980 241 402 4.0E-28 T 23-04-2016 THIMO_RS01880 5af84d918a14031d6efa1ef3b6271791 96 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 57 4.7E-15 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS01880 5af84d918a14031d6efa1ef3b6271791 96 Gene3D G3DSA:3.40.1620.10 1 47 2.9E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS01880 5af84d918a14031d6efa1ef3b6271791 96 SUPERFAMILY SSF143120 1 74 1.96E-13 T 23-04-2016 THIMO_RS01880 5af84d918a14031d6efa1ef3b6271791 96 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 46 9.5E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS09140 bfbb3a87d6850f1af1bd0e65c269e98e 89 PANTHER PTHR40688 1 89 2.1E-26 T 23-04-2016 THIMO_RS09140 bfbb3a87d6850f1af1bd0e65c269e98e 89 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 45 5.8E-9 T 23-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 THIMO_RS09140 bfbb3a87d6850f1af1bd0e65c269e98e 89 SUPERFAMILY SSF47598 6 46 3.26E-8 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 THIMO_RS09140 bfbb3a87d6850f1af1bd0e65c269e98e 89 PANTHER PTHR40688:SF1 1 89 2.1E-26 T 23-04-2016 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 Pfam PF09364 XFP N-terminal domain 15 391 5.1E-187 T 23-04-2016 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 SUPERFAMILY SSF52518 383 596 8.24E-23 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 Pfam PF09363 XFP C-terminal domain 594 795 1.2E-87 T 23-04-2016 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 PANTHER PTHR31273 12 797 0.0 T 23-04-2016 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 PANTHER PTHR31273:SF0 12 797 0.0 T 23-04-2016 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 406 583 4.1E-82 T 23-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 Hamap MF_01403 Probable phosphoketolase. 12 797 39.948 T 23-04-2016 IPR023962 Probable phosphoketolase THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 SUPERFAMILY SSF52518 14 376 2.82E-76 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 PIRSF PIRSF017245 2 797 0.0 T 23-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 ProSitePatterns PS60002 Phosphoketolase signature 1. 151 157 - T 23-04-2016 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 THIMO_RS09165 c8567a3e0f0334ffd7b2e8da36960b2f 797 Gene3D G3DSA:3.40.50.970 14 373 6.4E-25 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS18550 45b201d393c3b8bb89e1173f8980331b 313 Gene3D G3DSA:3.40.50.300 109 186 3.4E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18550 45b201d393c3b8bb89e1173f8980331b 313 SUPERFAMILY SSF53795 112 182 3.36E-9 T 23-04-2016 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 Gene3D G3DSA:1.20.200.10 120 389 6.3E-88 T 23-04-2016 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 4.7E-49 T 23-04-2016 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 454 1.2E-128 T 23-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 Gene3D G3DSA:1.10.275.10 1 119 2.3E-48 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 PANTHER PTHR11444 4 451 3.1E-279 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 Gene3D G3DSA:1.10.40.30 390 445 5.7E-30 T 23-04-2016 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 SUPERFAMILY SSF48557 10 453 6.44E-103 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 PANTHER PTHR11444:SF17 4 451 3.1E-279 T 23-04-2016 THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 Pfam PF00206 Lyase 14 312 8.3E-58 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.9E-17 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 1.9E-17 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.9E-17 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS07025 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 1.9E-17 T 23-04-2016 IPR000362 Fumarate lyase family THIMO_RS06760 5889a50a499224ba3f657380e7dabbe9 368 PANTHER PTHR13779:SF23 20 201 5.4E-29 T 23-04-2016 THIMO_RS06760 5889a50a499224ba3f657380e7dabbe9 368 PANTHER PTHR13779 20 201 5.4E-29 T 23-04-2016 THIMO_RS06760 5889a50a499224ba3f657380e7dabbe9 368 Gene3D G3DSA:3.40.50.300 20 168 1.1E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06760 5889a50a499224ba3f657380e7dabbe9 368 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 35 111 6.5E-5 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS06760 5889a50a499224ba3f657380e7dabbe9 368 SMART SM00382 30 170 0.0046 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS06760 5889a50a499224ba3f657380e7dabbe9 368 SUPERFAMILY SSF52540 19 221 2.02E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11480 f3a746ec4886fca64c7738d51dc9a817 182 SUPERFAMILY SSF53254 14 158 2.83E-31 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS11480 f3a746ec4886fca64c7738d51dc9a817 182 PANTHER PTHR23029 1 99 1.3E-14 T 23-04-2016 THIMO_RS11480 f3a746ec4886fca64c7738d51dc9a817 182 Gene3D G3DSA:3.40.50.1240 11 180 5.0E-54 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS11480 f3a746ec4886fca64c7738d51dc9a817 182 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 16 100 1.4E-12 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS11480 f3a746ec4886fca64c7738d51dc9a817 182 SMART SM00855 15 129 1.6E-6 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 Gene3D G3DSA:3.30.930.10 10 324 9.2E-61 T 23-04-2016 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 SUPERFAMILY SSF55681 14 325 2.49E-71 T 23-04-2016 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 Pfam PF00152 tRNA synthetases class II (D, K and N) 212 325 1.1E-19 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 Pfam PF00152 tRNA synthetases class II (D, K and N) 9 140 5.3E-15 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 PANTHER PTHR22594 17 327 2.6E-111 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 19 323 2.0E-114 T 23-04-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 34 44 4.4E-9 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 211 227 4.4E-9 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 100 117 4.4E-9 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 82 95 4.4E-9 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 THIMO_RS10640 d9e6b865c336f19603cecb57ee473123 328 PANTHER PTHR22594:SF7 17 327 2.6E-111 T 23-04-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 Gene3D G3DSA:3.40.50.150 173 363 1.0E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 PANTHER PTHR11746:SF63 45 361 1.6E-40 T 23-04-2016 THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 Pfam PF16864 Dimerisation domain 45 108 5.0E-13 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 Gene3D G3DSA:1.10.10.10 41 124 2.2E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 SUPERFAMILY SSF46785 43 124 8.38E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 PANTHER PTHR11746 45 361 1.6E-40 T 23-04-2016 THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 Pfam PF00891 O-methyltransferase 129 356 3.9E-44 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 SUPERFAMILY SSF53335 127 364 6.66E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14305 e85bc4a21b71f3196aa2d974db8dbb90 373 PIRSF PIRSF005739 35 370 1.5E-23 T 23-04-2016 IPR016461 O-methyltransferase COMT-type GO:0008168 THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 Hamap MF_00201 DNA repair protein RecO [recO]. 6 236 21.748 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 Gene3D G3DSA:2.40.50.140 12 60 1.4E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 Pfam PF02565 Recombination protein O C terminal 89 231 4.1E-26 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 Pfam PF11967 Recombination protein O N terminal 10 80 2.7E-14 T 23-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 PANTHER PTHR33991 6 237 2.1E-47 T 23-04-2016 THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 SUPERFAMILY SSF50249 10 79 1.16E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 SUPERFAMILY SSF57863 90 223 1.36E-11 T 23-04-2016 THIMO_RS08760 5ea73d9f16bdfba69f3a64fcdf70214f 239 TIGRFAM TIGR00613 reco: DNA repair protein RecO 11 234 2.0E-27 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 PANTHER PTHR24220:SF426 8 317 2.3E-139 T 23-04-2016 THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 SMART SM00382 35 242 6.8E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 298 1.9E-18 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 Pfam PF00005 ABC transporter 27 184 4.3E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 Gene3D G3DSA:3.40.50.300 5 257 1.7E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 SUPERFAMILY SSF52540 6 254 5.08E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 PANTHER PTHR24220 8 317 2.3E-139 T 23-04-2016 THIMO_RS10330 53a4b466ae016c96e9604040cb2a5646 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 317 1.9E-23 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 SMART SM00900 159 278 6.9E-14 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 PANTHER PTHR36118:SF1 127 212 1.2E-15 T 23-04-2016 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 PANTHER PTHR36118:SF1 242 288 1.2E-15 T 23-04-2016 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 Pfam PF04205 FMN-binding domain 159 275 3.6E-13 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 PANTHER PTHR36118 127 212 1.2E-15 T 23-04-2016 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 PANTHER PTHR36118 242 288 1.2E-15 T 23-04-2016 THIMO_RS01115 b46fd919257f28c14bc60287a80a79da 289 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 9 280 19.069 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS12005 281a0876e4f6d2f3236dbdc7789ba294 290 SUPERFAMILY SSF81345 8 262 4.45E-34 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS12005 281a0876e4f6d2f3236dbdc7789ba294 290 PANTHER PTHR30477 1 281 1.1E-72 T 23-04-2016 THIMO_RS12005 281a0876e4f6d2f3236dbdc7789ba294 290 Gene3D G3DSA:1.10.3470.10 58 268 7.1E-6 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS12005 281a0876e4f6d2f3236dbdc7789ba294 290 PANTHER PTHR30477:SF0 1 281 1.1E-72 T 23-04-2016 THIMO_RS12005 281a0876e4f6d2f3236dbdc7789ba294 290 Pfam PF00950 ABC 3 transport family 10 265 1.1E-69 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 SMART SM00382 64 259 1.9E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 Pfam PF00005 ABC transporter 56 211 6.2E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 PANTHER PTHR24220:SF585 41 285 6.1E-136 T 23-04-2016 THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 40 287 3.0E-122 T 23-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 ProSitePatterns PS00211 ABC transporters family signature. 184 198 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 PANTHER PTHR24220 41 285 6.1E-136 T 23-04-2016 THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 Gene3D G3DSA:3.40.50.300 39 281 3.8E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12085 42ff715c400d6772f3189d85af9aadd2 287 SUPERFAMILY SSF52540 38 275 4.52E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16605 7400997c1c63a2add4e94a6b5fb5b845 224 Pfam PF08239 Bacterial SH3 domain 34 81 2.4E-9 T 23-04-2016 IPR003646 SH3-like domain, bacterial-type THIMO_RS16605 7400997c1c63a2add4e94a6b5fb5b845 224 SMART SM00287 21 87 1.2E-6 T 23-04-2016 IPR003646 SH3-like domain, bacterial-type THIMO_RS16605 7400997c1c63a2add4e94a6b5fb5b845 224 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 25 221 9.1E-61 T 23-04-2016 IPR016476 SH3 domain protein THIMO_RS12715 ed4c32766fe9985b405715a3fa777143 143 SUPERFAMILY SSF143422 1 130 9.03E-42 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12715 ed4c32766fe9985b405715a3fa777143 143 PANTHER PTHR33360 3 141 2.0E-46 T 23-04-2016 THIMO_RS12715 ed4c32766fe9985b405715a3fa777143 143 SMART SM01321 11 129 3.2E-36 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12715 ed4c32766fe9985b405715a3fa777143 143 Pfam PF01797 Transposase IS200 like 12 129 2.5E-34 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12715 ed4c32766fe9985b405715a3fa777143 143 PANTHER PTHR33360:SF2 3 141 2.0E-46 T 23-04-2016 THIMO_RS12715 ed4c32766fe9985b405715a3fa777143 143 Gene3D G3DSA:3.30.70.1290 2 132 5.3E-44 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS05325 5572f8805127c6339ca168971cbebb10 352 PANTHER PTHR22550:SF12 1 329 1.2E-74 T 23-04-2016 THIMO_RS05325 5572f8805127c6339ca168971cbebb10 352 Pfam PF00092 von Willebrand factor type A domain 104 298 3.0E-23 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05325 5572f8805127c6339ca168971cbebb10 352 SUPERFAMILY SSF53300 100 301 3.53E-32 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05325 5572f8805127c6339ca168971cbebb10 352 SMART SM00327 102 306 1.2E-19 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05325 5572f8805127c6339ca168971cbebb10 352 PANTHER PTHR22550 1 329 1.2E-74 T 23-04-2016 THIMO_RS05325 5572f8805127c6339ca168971cbebb10 352 Gene3D G3DSA:3.40.50.410 101 301 5.3E-22 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 42 59 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 Gene3D G3DSA:3.10.20.30 12 65 5.9E-8 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 SUPERFAMILY SSF54862 86 217 4.02E-35 T 23-04-2016 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 SUPERFAMILY SSF54292 13 85 1.14E-19 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 PIRSF PIRSF000309 10 243 2.9E-105 T 23-04-2016 IPR016214 NAD-reducing hydrogenase, HoxS gamma subunit MetaCyc: PWY-5382|MetaCyc: PWY-6758 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 SMART SM00929 94 134 1.2E-15 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 201 212 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 PANTHER PTHR11615 14 217 9.3E-63 T 23-04-2016 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 Gene3D G3DSA:3.30.70.20 111 218 1.8E-14 T 23-04-2016 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 Pfam PF00037 4Fe-4S binding domain 199 216 4.0E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 11 87 9.5E-20 T 23-04-2016 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 PANTHER PTHR11615:SF158 14 217 9.3E-63 T 23-04-2016 THIMO_RS11240 b349de88b7eaed650b232d079894776e 243 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 94 133 1.8E-15 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PANTHER PTHR30013 1 350 6.0E-147 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 157 181 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 282 295 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 6.0E-73 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 SUPERFAMILY SSF56770 49 307 2.92E-79 T 23-04-2016 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 38 0.0016 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 6 317 2.3E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 Gene3D G3DSA:4.10.480.10 225 307 1.0E-37 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PIRSF PIRSF000310 5 351 8.9E-126 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 Gene3D G3DSA:3.40.50.700 50 224 7.0E-49 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 205 1.3E-27 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 304 2.6E-32 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal THIMO_RS03715 2856474f302cc39316395d8b6c60bcf1 354 PANTHER PTHR30013:SF7 1 350 6.0E-147 T 23-04-2016 THIMO_RS00470 4e436c24e52cdb42e76e59985d93a48a 265 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 6 263 3.3E-38 T 23-04-2016 IPR010239 Conserved hypothetical protein CHP02001 THIMO_RS00470 4e436c24e52cdb42e76e59985d93a48a 265 SUPERFAMILY SSF56925 69 198 4.97E-5 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 THIMO_RS00470 4e436c24e52cdb42e76e59985d93a48a 265 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 26 190 4.5E-32 T 23-04-2016 IPR010239 Conserved hypothetical protein CHP02001 THIMO_RS07440 c67346e89d52f930a38cf12a8b983236 69 PANTHER PTHR37011:SF1 1 68 4.9E-25 T 23-04-2016 THIMO_RS07440 c67346e89d52f930a38cf12a8b983236 69 SUPERFAMILY SSF50182 19 68 9.81E-18 T 23-04-2016 IPR010920 LSM domain THIMO_RS07440 c67346e89d52f930a38cf12a8b983236 69 PANTHER PTHR37011 1 68 4.9E-25 T 23-04-2016 THIMO_RS07440 c67346e89d52f930a38cf12a8b983236 69 Gene3D G3DSA:2.30.30.100 16 68 3.3E-24 T 23-04-2016 THIMO_RS07440 c67346e89d52f930a38cf12a8b983236 69 Pfam PF06004 Bacterial protein of unknown function (DUF903) 20 68 4.9E-23 T 23-04-2016 IPR010305 Protein of unknown function DUF903 THIMO_RS05750 f9e376f9f30c30bde69ac29521a33de6 205 Pfam PF01926 50S ribosome-binding GTPase 27 145 1.8E-18 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS05750 f9e376f9f30c30bde69ac29521a33de6 205 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 8 191 2.4E-66 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 THIMO_RS05750 f9e376f9f30c30bde69ac29521a33de6 205 SUPERFAMILY SSF52540 7 195 1.8E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05750 f9e376f9f30c30bde69ac29521a33de6 205 Gene3D G3DSA:3.40.50.300 9 195 1.1E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05750 f9e376f9f30c30bde69ac29521a33de6 205 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 13 195 25.944 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 THIMO_RS05750 f9e376f9f30c30bde69ac29521a33de6 205 PANTHER PTHR11649 10 196 5.8E-48 T 23-04-2016 THIMO_RS11985 f93ed4de1286a9895c5d66ad519cf7a8 419 Pfam PF02687 FtsX-like permease family 292 410 1.5E-17 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS11985 f93ed4de1286a9895c5d66ad519cf7a8 419 PANTHER PTHR30489:SF2 226 418 4.7E-103 T 23-04-2016 THIMO_RS11985 f93ed4de1286a9895c5d66ad519cf7a8 419 PANTHER PTHR30489:SF2 1 203 4.7E-103 T 23-04-2016 THIMO_RS11985 f93ed4de1286a9895c5d66ad519cf7a8 419 Pfam PF12704 MacB-like periplasmic core domain 19 206 2.6E-11 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS11985 f93ed4de1286a9895c5d66ad519cf7a8 419 PANTHER PTHR30489 226 418 4.7E-103 T 23-04-2016 THIMO_RS11985 f93ed4de1286a9895c5d66ad519cf7a8 419 PANTHER PTHR30489 1 203 4.7E-103 T 23-04-2016 THIMO_RS00155 f696c701e400965297daf96e35340749 316 SUPERFAMILY SSF51735 6 179 5.73E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00155 f696c701e400965297daf96e35340749 316 PANTHER PTHR22604 1 207 3.8E-21 T 23-04-2016 THIMO_RS00155 f696c701e400965297daf96e35340749 316 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 158 212 2.7E-12 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 THIMO_RS00155 f696c701e400965297daf96e35340749 316 PANTHER PTHR22604:SF123 1 207 3.8E-21 T 23-04-2016 THIMO_RS00155 f696c701e400965297daf96e35340749 316 Gene3D G3DSA:3.40.50.720 6 202 2.4E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00155 f696c701e400965297daf96e35340749 316 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 127 7.9E-14 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Pfam PF00702 haloacid dehalogenase-like hydrolase 381 600 6.7E-34 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Pfam PF00122 E1-E2 ATPase 167 375 3.1E-45 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 587 606 6.5E-25 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 384 398 6.5E-25 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 522 6.5E-25 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 544 6.5E-25 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 242 256 6.5E-25 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 610 622 6.5E-25 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PANTHER PTHR24093 125 692 1.3E-120 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:3.40.1110.10 400 513 5.5E-18 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 SUPERFAMILY SSF56784 458 686 4.12E-47 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 SUPERFAMILY SSF56784 382 402 4.12E-47 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 142 688 6.2E-151 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 170 662 2.6E-63 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 ProSitePatterns PS01229 Hypothetical cof family signature 2. 587 609 - T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PANTHER PTHR24093:SF50 125 692 1.3E-120 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 386 392 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:3.40.50.1000 514 655 2.5E-43 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:3.40.50.1000 359 399 2.5E-43 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 SUPERFAMILY SSF81653 195 291 1.83E-23 T 23-04-2016 THIMO_RS13810 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:2.70.150.10 175 292 5.8E-22 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 PANTHER PTHR24220 6 228 1.8E-89 T 23-04-2016 THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 Pfam PF00005 ABC transporter 25 173 6.3E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 PANTHER PTHR24220:SF86 6 228 1.8E-89 T 23-04-2016 THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 SUPERFAMILY SSF52540 6 227 2.66E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 Gene3D G3DSA:3.40.50.300 5 228 3.3E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12060 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 SMART SM00382 33 221 1.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 Pfam PF00472 RF-1 domain 214 321 3.6E-42 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 Gene3D G3DSA:3.30.160.20 214 286 5.8E-35 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 Pfam PF03462 PCRF domain 13 203 2.3E-69 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.091 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 2.4E-159 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 PANTHER PTHR11075 1 356 8.9E-169 T 23-04-2016 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 Gene3D G3DSA:1.20.58.410 7 93 6.8E-17 T 23-04-2016 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 SMART SM00937 63 178 1.0E-58 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 PANTHER PTHR11075:SF9 1 356 8.9E-169 T 23-04-2016 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 SUPERFAMILY SSF75620 12 353 8.76E-132 T 23-04-2016 THIMO_RS14870 6bb9f6a37106a2cb77980b28d4fc36d9 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 THIMO_RS06555 8830dd14aa2c0ffec2437bf2bce6aa5c 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 45 4.2E-5 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS06555 8830dd14aa2c0ffec2437bf2bce6aa5c 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 95 128 2.1E-5 T 23-04-2016 IPR001451 Hexapeptide repeat THIMO_RS06555 8830dd14aa2c0ffec2437bf2bce6aa5c 184 PANTHER PTHR13061 3 175 9.7E-60 T 23-04-2016 THIMO_RS06555 8830dd14aa2c0ffec2437bf2bce6aa5c 184 SUPERFAMILY SSF51161 4 175 1.01E-39 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS06555 8830dd14aa2c0ffec2437bf2bce6aa5c 184 PANTHER PTHR13061:SF11 3 175 9.7E-60 T 23-04-2016 THIMO_RS06555 8830dd14aa2c0ffec2437bf2bce6aa5c 184 Gene3D G3DSA:2.160.10.10 7 175 4.8E-39 T 23-04-2016 THIMO_RS09065 8178c657482cc1798ccc070e2a3834c6 158 Pfam PF03734 L,D-transpeptidase catalytic domain 21 156 1.3E-17 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS09065 8178c657482cc1798ccc070e2a3834c6 158 Gene3D G3DSA:2.40.440.10 18 157 2.9E-21 T 23-04-2016 THIMO_RS09065 8178c657482cc1798ccc070e2a3834c6 158 SUPERFAMILY SSF141523 21 157 3.79E-23 T 23-04-2016 THIMO_RS09065 8178c657482cc1798ccc070e2a3834c6 158 PANTHER PTHR36699 18 158 8.9E-52 T 23-04-2016 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 Pfam PF01047 MarR family 44 94 2.5E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 Gene3D G3DSA:1.10.10.10 3 144 8.9E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 1.7E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 1.7E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 1.7E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 PANTHER PTHR33164:SF16 9 154 2.8E-22 T 23-04-2016 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 SMART SM00347 29 130 2.2E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 SUPERFAMILY SSF46785 6 145 2.77E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02290 07c0ec826cf6842ca4a1b749e0d0eb97 155 PANTHER PTHR33164 9 154 2.8E-22 T 23-04-2016 THIMO_RS06785 b914414563cbb7b0e0a5732b0b0aa2e2 268 Pfam PF01435 Peptidase family M48 65 253 2.5E-38 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 THIMO_RS06785 b914414563cbb7b0e0a5732b0b0aa2e2 268 PANTHER PTHR22726 1 266 8.9E-69 T 23-04-2016 THIMO_RS06785 b914414563cbb7b0e0a5732b0b0aa2e2 268 Gene3D G3DSA:3.30.2010.10 62 143 8.0E-13 T 23-04-2016 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 178 203 - T 23-04-2016 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 SMART SM01002 154 320 1.1E-83 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 23-04-2016 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 PIRSF PIRSF000203 1 518 3.7E-267 T 23-04-2016 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 149 377 2.2E-75 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 SMART SM01003 4 145 1.4E-67 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 145 2.1E-48 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 518 2.9E-248 T 23-04-2016 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 Gene3D G3DSA:3.40.50.1770 196 380 4.6E-49 T 23-04-2016 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 PANTHER PTHR10160 1 518 3.2E-289 T 23-04-2016 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 PANTHER PTHR10160:SF19 1 518 3.2E-289 T 23-04-2016 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 Gene3D G3DSA:3.40.50.1770 2 195 1.5E-71 T 23-04-2016 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 SUPERFAMILY SSF51735 145 326 1.73E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 435 518 3.0E-36 T 23-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 THIMO_RS01140 f0071f7d578ab373f2c70164ce3abfa3 518 SUPERFAMILY SSF52283 1 176 8.33E-53 T 23-04-2016 THIMO_RS08190 a6afc03211e4f5dcc0cb7c9ffc333c63 123 SUPERFAMILY SSF81593 18 119 1.29E-15 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF00384 Molybdopterin oxidoreductase 520 623 7.4E-10 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF00384 Molybdopterin oxidoreductase 72 368 4.6E-23 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615:SF164 15 270 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615:SF164 349 466 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615:SF164 498 658 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615:SF164 728 941 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:2.20.25.90 14 73 1.5E-21 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615 15 270 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615 349 466 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615 498 658 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 PANTHER PTHR11615 728 941 5.0E-131 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF01568 Molydopterin dinucleotide binding domain 789 879 1.2E-11 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:3.40.50.740 74 152 1.4E-37 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:3.40.50.740 505 629 1.4E-37 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 SMART SM00926 15 69 4.8E-18 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 SUPERFAMILY SSF50692 782 932 2.69E-32 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 SUPERFAMILY SSF53706 15 743 1.96E-153 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 17 68 1.1E-15 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:3.40.228.10 153 269 1.7E-61 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:3.40.228.10 330 459 1.7E-61 T 23-04-2016 THIMO_RS07540 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:2.40.40.20 763 933 8.9E-45 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 338 352 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 Pfam PF13450 NAD(P)-binding Rossmann-like domain 11 76 2.4E-6 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 Pfam PF00732 GMC oxidoreductase 109 379 4.8E-32 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PANTHER PTHR11552 244 623 3.8E-160 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PANTHER PTHR11552 61 225 3.8E-160 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PANTHER PTHR11552 5 43 3.8E-160 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 SUPERFAMILY SSF54373 417 565 5.23E-23 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PANTHER PTHR11552:SF100 244 623 3.8E-160 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PANTHER PTHR11552:SF100 61 225 3.8E-160 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PANTHER PTHR11552:SF100 5 43 3.8E-160 T 23-04-2016 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 PIRSF PIRSF000137 1 624 2.6E-134 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 Gene3D G3DSA:3.50.50.60 255 397 1.2E-94 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 Gene3D G3DSA:3.50.50.60 4 159 1.2E-94 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 Gene3D G3DSA:3.50.50.60 558 623 1.2E-94 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 Pfam PF05199 GMC oxidoreductase 479 616 3.0E-32 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 SUPERFAMILY SSF51905 6 213 3.42E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 SUPERFAMILY SSF51905 244 372 3.42E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS16275 9ea4003642d783b609f3d5e10683a39f 624 SUPERFAMILY SSF51905 564 623 3.42E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS13845 a63f63267789d05ce46114a54b9fb79a 286 SUPERFAMILY SSF69593 54 252 3.53E-20 T 23-04-2016 THIMO_RS13845 a63f63267789d05ce46114a54b9fb79a 286 SMART SM00563 68 200 1.0E-15 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 THIMO_RS13845 a63f63267789d05ce46114a54b9fb79a 286 Pfam PF01553 Acyltransferase 57 197 3.7E-14 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 THIMO_RS13845 a63f63267789d05ce46114a54b9fb79a 286 PANTHER PTHR10434 26 198 3.2E-13 T 23-04-2016 THIMO_RS13845 a63f63267789d05ce46114a54b9fb79a 286 PANTHER PTHR10434:SF21 26 198 3.2E-13 T 23-04-2016 THIMO_RS13845 a63f63267789d05ce46114a54b9fb79a 286 Gene3D G3DSA:3.40.1130.10 52 205 6.9E-5 T 23-04-2016 THIMO_RS12515 4be64cddcb140eaa2a942eed446aef07 181 PANTHER PTHR14269 3 181 2.9E-75 T 23-04-2016 THIMO_RS12515 4be64cddcb140eaa2a942eed446aef07 181 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 48 70 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 THIMO_RS12515 4be64cddcb140eaa2a942eed446aef07 181 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 70 3.9E-18 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 THIMO_RS12515 4be64cddcb140eaa2a942eed446aef07 181 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 178 2.5E-51 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 THIMO_RS12515 4be64cddcb140eaa2a942eed446aef07 181 PANTHER PTHR14269:SF13 3 181 2.9E-75 T 23-04-2016 THIMO_RS12515 4be64cddcb140eaa2a942eed446aef07 181 PIRSF PIRSF000847 1 181 4.5E-42 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 THIMO_RS14075 6a5bd3f4c0ad78a5928ec166c022e562 204 SUPERFAMILY SSF143414 138 200 9.55E-9 T 23-04-2016 THIMO_RS14075 6a5bd3f4c0ad78a5928ec166c022e562 204 SMART SM00877 138 203 5.1E-12 T 23-04-2016 IPR000249 Microcompartment protein, bacteria THIMO_RS14075 6a5bd3f4c0ad78a5928ec166c022e562 204 Pfam PF00936 BMC domain 142 198 3.4E-6 T 23-04-2016 IPR000249 Microcompartment protein, bacteria THIMO_RS11490 7feca80efd1b61e4a22d854600a0b94c 121 PANTHER PTHR34703:SF1 1 88 4.5E-24 T 23-04-2016 THIMO_RS11490 7feca80efd1b61e4a22d854600a0b94c 121 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 8 96 4.2E-24 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 THIMO_RS11490 7feca80efd1b61e4a22d854600a0b94c 121 PANTHER PTHR34703 1 88 4.5E-24 T 23-04-2016 THIMO_RS11490 7feca80efd1b61e4a22d854600a0b94c 121 Pfam PF03334 Na+/H+ antiporter subunit 8 85 1.2E-23 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 PANTHER PTHR21294:SF0 235 294 9.1E-80 T 23-04-2016 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 PANTHER PTHR21294:SF0 1 204 9.1E-80 T 23-04-2016 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 Pfam PF01012 Electron transfer flavoprotein domain 27 198 7.8E-45 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 SUPERFAMILY SSF52402 233 289 6.77E-61 T 23-04-2016 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 SUPERFAMILY SSF52402 6 202 6.77E-61 T 23-04-2016 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 PIRSF PIRSF000090 3 295 7.1E-70 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 PANTHER PTHR21294 235 294 9.1E-80 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 PANTHER PTHR21294 1 204 9.1E-80 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 SMART SM00893 26 211 8.2E-52 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 THIMO_RS02080 36dc4541dadc59d115096b20e7c24628 296 Gene3D G3DSA:3.40.50.620 5 293 2.0E-76 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS01585 859dffc2238a35024240173c9df16955 186 SUPERFAMILY SSF143422 4 143 1.7E-27 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS01585 859dffc2238a35024240173c9df16955 186 SMART SM01321 9 137 8.7E-28 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS01585 859dffc2238a35024240173c9df16955 186 PANTHER PTHR36966 1 182 4.4E-26 T 23-04-2016 THIMO_RS01585 859dffc2238a35024240173c9df16955 186 Pfam PF01797 Transposase IS200 like 13 85 2.1E-7 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS01585 859dffc2238a35024240173c9df16955 186 Gene3D G3DSA:3.30.70.1290 13 141 2.4E-11 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS01585 859dffc2238a35024240173c9df16955 186 PANTHER PTHR36966:SF1 1 182 4.4E-26 T 23-04-2016 THIMO_RS08410 5427fa81b68d1dd21fd4bbb281474515 241 Gene3D G3DSA:3.40.50.300 1 220 4.6E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08410 5427fa81b68d1dd21fd4bbb281474515 241 SUPERFAMILY SSF52540 1 215 2.54E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08410 5427fa81b68d1dd21fd4bbb281474515 241 PANTHER PTHR24220 3 217 3.0E-89 T 23-04-2016 THIMO_RS08410 5427fa81b68d1dd21fd4bbb281474515 241 Pfam PF00005 ABC transporter 17 163 4.1E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS08410 5427fa81b68d1dd21fd4bbb281474515 241 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS08410 5427fa81b68d1dd21fd4bbb281474515 241 SMART SM00382 26 213 3.6E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 SUPERFAMILY SSF110997 160 228 5.49E-8 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 Gene3D G3DSA:3.30.70.1070 155 228 4.1E-7 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 PANTHER PTHR34183 1 130 8.5E-38 T 23-04-2016 THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 PANTHER PTHR34183 154 221 8.5E-38 T 23-04-2016 THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 SUPERFAMILY SSF50685 15 66 1.67E-6 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 1 80 1.2E-30 T 23-04-2016 IPR012997 Rare lipoprotein A THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 Pfam PF05036 Sporulation related domain 162 225 1.7E-6 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 Pfam PF03330 Lytic transglycolase 1 65 4.3E-18 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 PANTHER PTHR34183:SF1 1 130 8.5E-38 T 23-04-2016 THIMO_RS13230 188f53f7bda97f789ff0f52c05a4cb3c 234 PANTHER PTHR34183:SF1 154 221 8.5E-38 T 23-04-2016 THIMO_RS04165 ee9ea16c4583b722212772224ca43fbd 255 Gene3D G3DSA:3.40.50.1000 4 16 7.7E-9 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS04165 ee9ea16c4583b722212772224ca43fbd 255 Gene3D G3DSA:3.40.50.1000 122 200 7.7E-9 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS04165 ee9ea16c4583b722212772224ca43fbd 255 SUPERFAMILY SSF56784 4 48 7.93E-11 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS04165 ee9ea16c4583b722212772224ca43fbd 255 SUPERFAMILY SSF56784 104 207 7.93E-11 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS04165 ee9ea16c4583b722212772224ca43fbd 255 PANTHER PTHR15157:SF11 4 229 3.9E-38 T 23-04-2016 THIMO_RS04165 ee9ea16c4583b722212772224ca43fbd 255 PANTHER PTHR15157 4 229 3.9E-38 T 23-04-2016 THIMO_RS15885 8b311d866c5b8ca1f2f1e59ebe0268eb 511 PANTHER PTHR11365 1 510 1.6E-198 T 23-04-2016 THIMO_RS15885 8b311d866c5b8ca1f2f1e59ebe0268eb 511 Pfam PF02538 Hydantoinase B/oxoprolinase 2 510 9.0E-187 T 23-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 SUPERFAMILY SSF47240 7 146 9.1E-27 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 Gene3D G3DSA:1.20.1260.10 7 145 1.4E-26 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 89 109 1.7E-11 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 47 67 1.7E-11 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 26 46 1.7E-11 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 6 25 1.7E-11 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS14055 be4de18f029bd4e0f4b6d782f94dc779 158 Pfam PF00210 Ferritin-like domain 14 146 7.7E-18 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 THIMO_RS12640 97d2b5b13cd78e6541d2941357950861 163 Pfam PF02674 Colicin V production protein 4 144 3.0E-39 T 23-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 THIMO_RS12640 97d2b5b13cd78e6541d2941357950861 163 PANTHER PTHR36926:SF1 1 155 1.5E-48 T 23-04-2016 THIMO_RS12640 97d2b5b13cd78e6541d2941357950861 163 PANTHER PTHR36926 1 155 1.5E-48 T 23-04-2016 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 164.76 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 6.7E-74 T 23-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 5 121 3.2E-46 T 23-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 SUPERFAMILY SSF52440 5 123 2.3E-45 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 Gene3D G3DSA:3.40.50.20 5 130 7.0E-54 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 PANTHER PTHR21621 1 315 6.9E-147 T 23-04-2016 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 TIGRFAM TIGR01380 glut_syn: glutathione synthase 5 310 3.3E-135 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 Gene3D G3DSA:3.30.470.20 193 301 5.9E-46 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 PANTHER PTHR21621:SF4 1 315 6.9E-147 T 23-04-2016 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 SUPERFAMILY SSF56059 124 312 7.95E-54 T 23-04-2016 THIMO_RS12210 dccf7156eaa02128a5e81a1058cb80a4 319 Gene3D G3DSA:3.30.1490.20 138 192 1.9E-27 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 19 407 1.1E-136 T 23-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 Gene3D G3DSA:3.40.50.10300 198 411 9.6E-81 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 PANTHER PTHR14359:SF20 20 411 1.8E-179 T 23-04-2016 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 SUPERFAMILY SSF52507 18 190 4.97E-62 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 Pfam PF02441 Flavoprotein 20 147 2.6E-35 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 201 382 3.7E-69 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 PANTHER PTHR14359 20 411 1.8E-179 T 23-04-2016 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 Gene3D G3DSA:3.40.50.1950 16 190 2.7E-64 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 THIMO_RS03545 6f86945486fd9de325781c9c5eb93f1d 417 SUPERFAMILY SSF102645 200 411 3.79E-72 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 THIMO_RS15155 59ded05a0317f0e471545f885d770398 663 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 154 9.0E-18 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS15155 59ded05a0317f0e471545f885d770398 663 Gene3D G3DSA:2.170.130.10 31 161 1.1E-29 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 THIMO_RS15155 59ded05a0317f0e471545f885d770398 663 Gene3D G3DSA:2.40.170.20 162 663 2.8E-81 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS15155 59ded05a0317f0e471545f885d770398 663 SUPERFAMILY SSF56935 36 663 4.28E-98 T 23-04-2016 THIMO_RS15155 59ded05a0317f0e471545f885d770398 663 Pfam PF00593 TonB dependent receptor 435 662 7.5E-27 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 THIMO_RS15155 59ded05a0317f0e471545f885d770398 663 PANTHER PTHR32552 3 663 1.2E-51 T 23-04-2016 THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 Gene3D G3DSA:3.40.50.720 6 248 2.9E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 6 248 2.8E-116 T 23-04-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PANTHER PTHR24322 156 188 5.7E-53 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PANTHER PTHR24322 10 140 5.7E-53 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PANTHER PTHR24322:SF328 156 188 5.7E-53 T 23-04-2016 THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PANTHER PTHR24322:SF328 10 140 5.7E-53 T 23-04-2016 THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 SUPERFAMILY SSF51735 6 248 9.48E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.7E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.7E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.7E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.7E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.7E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.7E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 4.3E-58 T 23-04-2016 THIMO_RS07860 ab0a70a587d813c4d618f62c185fbbd2 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 7.0E-7 T 23-04-2016 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 PANTHER PTHR31689 3 275 1.0E-133 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 274 3.1E-91 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 Pfam PF01678 Diaminopimelate epimerase 4 124 4.1E-34 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 Pfam PF01678 Diaminopimelate epimerase 153 268 1.7E-27 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 Gene3D G3DSA:3.10.310.10 122 263 4.7E-50 T 23-04-2016 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 Gene3D G3DSA:3.10.310.10 3 121 1.4E-52 T 23-04-2016 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 SUPERFAMILY SSF54506 3 274 4.89E-56 T 23-04-2016 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 2 275 39.406 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 65 79 - T 23-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS15580 64faf3595051fcf90c78083d288a1bac 275 PANTHER PTHR31689:SF0 3 275 1.0E-133 T 23-04-2016 THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 SMART SM00382 28 229 2.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 PANTHER PTHR24220 5 237 1.4E-133 T 23-04-2016 THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 Pfam PF00005 ABC transporter 19 166 1.3E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 SUPERFAMILY SSF52540 3 237 1.93E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 PANTHER PTHR24220:SF497 5 237 1.4E-133 T 23-04-2016 THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 Gene3D G3DSA:3.40.50.300 2 234 2.3E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 6.6E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal THIMO_RS13160 5c32109544b46899edfb73954f0fb5f8 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 1.5E-114 T 23-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 PANTHER PTHR10742:SF275 3 416 1.2E-126 T 23-04-2016 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 Gene3D G3DSA:3.50.50.60 3 106 9.3E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 Gene3D G3DSA:3.50.50.60 202 277 9.3E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 Pfam PF01593 Flavin containing amine oxidoreductase 12 278 2.0E-16 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 SUPERFAMILY SSF51905 3 303 1.17E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 SUPERFAMILY SSF51905 385 415 1.17E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14185 559759a3d6591d79c37fef80652a80cf 437 PANTHER PTHR10742 3 416 1.2E-126 T 23-04-2016 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 PANTHER PTHR30126:SF6 1 309 7.7E-156 T 23-04-2016 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 PANTHER PTHR30126 1 309 7.7E-156 T 23-04-2016 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 SUPERFAMILY SSF46785 1 112 4.84E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 Gene3D G3DSA:3.40.190.10 91 183 3.2E-23 T 23-04-2016 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 Gene3D G3DSA:3.40.190.10 184 260 1.3E-25 T 23-04-2016 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 6.6E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 6.6E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 6.6E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 SUPERFAMILY SSF53850 91 300 2.13E-41 T 23-04-2016 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 Gene3D G3DSA:1.10.10.10 1 82 1.2E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.6E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS04415 283f1552e2d84faf43ae89d5b9ef69f4 313 Pfam PF03466 LysR substrate binding domain 90 290 3.5E-43 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 PANTHER PTHR37010:SF1 1 100 2.6E-20 T 23-04-2016 THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 PANTHER PTHR37010 1 100 2.6E-20 T 23-04-2016 THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 PIRSF PIRSF006223 1 100 2.6E-23 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 SUPERFAMILY SSF69721 5 100 3.66E-30 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 Pfam PF04358 DsrC like protein 6 100 5.1E-25 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 Gene3D G3DSA:3.30.1420.10 8 38 3.0E-7 T 23-04-2016 THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 Gene3D G3DSA:1.10.10.370 39 100 3.8E-18 T 23-04-2016 THIMO_RS13360 4cfa717d1c4080a7a348eba3ba80fe2a 100 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 5 100 6.8E-22 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 Gene3D G3DSA:3.90.1180.10 4 141 7.4E-64 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 SUPERFAMILY SSF52161 5 142 6.02E-59 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 23-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 PIRSF PIRSF002181 1 142 1.3E-49 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.411 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 Pfam PF00572 Ribosomal protein L13 15 138 1.0E-57 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 141 7.8E-64 T 23-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 THIMO_RS05660 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 PANTHER PTHR11545 1 142 7.4E-75 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.2E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.2E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.2E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 SUPERFAMILY SSF51735 6 237 3.12E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PANTHER PTHR24322 9 142 1.2E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PANTHER PTHR24322 160 192 1.2E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 Pfam PF00106 short chain dehydrogenase 6 200 1.6E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 Gene3D G3DSA:3.40.50.720 5 237 5.0E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PANTHER PTHR24322:SF376 9 142 1.2E-52 T 23-04-2016 THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PANTHER PTHR24322:SF376 160 192 1.2E-52 T 23-04-2016 THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 5.3E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.3E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 5.3E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 5.3E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS17260 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.3E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS18040 e2cc51227f3af2ddcce818aff37891e4 161 PANTHER PTHR35091 2 161 4.1E-26 T 23-04-2016 THIMO_RS18040 e2cc51227f3af2ddcce818aff37891e4 161 Pfam PF03748 Flagellar basal body-associated protein FliL 60 161 2.3E-20 T 23-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 THIMO_RS02355 d16833a3c4910687b7bb1ffd0f9ca393 182 PANTHER PTHR36558:SF1 1 180 4.1E-45 T 23-04-2016 THIMO_RS02355 d16833a3c4910687b7bb1ffd0f9ca393 182 PANTHER PTHR36558 1 180 4.1E-45 T 23-04-2016 THIMO_RS02355 d16833a3c4910687b7bb1ffd0f9ca393 182 Gene3D G3DSA:3.90.1570.10 9 158 1.5E-22 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS02355 d16833a3c4910687b7bb1ffd0f9ca393 182 SUPERFAMILY SSF52980 6 176 2.36E-26 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS02355 d16833a3c4910687b7bb1ffd0f9ca393 182 Pfam PF05685 Putative restriction endonuclease 11 164 3.6E-31 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS00460 755f712630600f6b06e96dab25978692 437 SUPERFAMILY SSF111352 33 416 7.59E-131 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 THIMO_RS00460 755f712630600f6b06e96dab25978692 437 ProSitePatterns PS01219 Ammonium transporters signature. 191 216 - T 23-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 THIMO_RS00460 755f712630600f6b06e96dab25978692 437 Gene3D G3DSA:1.10.3430.10 32 416 2.7E-140 T 23-04-2016 IPR029020 Ammonium/urea transporter THIMO_RS00460 755f712630600f6b06e96dab25978692 437 Pfam PF00909 Ammonium Transporter Family 39 435 2.1E-121 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 THIMO_RS00460 755f712630600f6b06e96dab25978692 437 PANTHER PTHR11730 16 435 8.0E-188 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 THIMO_RS00460 755f712630600f6b06e96dab25978692 437 TIGRFAM TIGR00836 amt: ammonium transporter 37 435 5.0E-136 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 THIMO_RS00460 755f712630600f6b06e96dab25978692 437 PANTHER PTHR11730:SF17 16 435 8.0E-188 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF54862 165 247 7.22E-8 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF55124 7 124 5.4E-42 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 335 5.6E-25 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 TIGRFAM TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit 22 356 2.4E-168 T 23-04-2016 IPR011808 Sulphite reductase, dissimilatory-type beta subunit GO:0006790|GO:0009055|GO:0018551|GO:0051539 KEGG: 00920+1.8.99.5|MetaCyc: PWY-5306|MetaCyc: PWY-5360 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.30.70.20 190 249 2.4E-6 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 PANTHER PTHR11493 249 348 4.2E-62 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 PANTHER PTHR11493 5 186 4.2E-62 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF56014 119 189 7.59E-33 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF56014 253 342 7.59E-33 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 234 245 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 PANTHER PTHR11493:SF51 249 348 4.2E-62 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 PANTHER PTHR11493:SF51 5 186 4.2E-62 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.90.480.10 66 139 6.9E-8 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 49 110 3.5E-7 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.30.413.10 256 330 1.3E-11 T 23-04-2016 THIMO_RS00695 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.30.413.10 140 189 1.3E-11 T 23-04-2016 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 PANTHER PTHR30035 14 244 1.2E-61 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 33 46 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 101 118 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 137 154 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 50 66 4.2E-25 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 Pfam PF04333 MlaA lipoprotein 32 224 1.3E-78 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 THIMO_RS15860 fb0038de0be03de6b2e75ebf67c4ca03 250 PANTHER PTHR30035:SF3 14 244 1.2E-61 T 23-04-2016 THIMO_RS06755 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 Pfam PF13203 Putative metallopeptidase domain 5 308 1.3E-75 T 23-04-2016 IPR025154 Putative metallopeptidase domain THIMO_RS06755 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 Pfam PF09967 VWA-like domain (DUF2201) 318 440 4.0E-38 T 23-04-2016 IPR018698 VWA-like domain THIMO_RS06755 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 PANTHER PTHR38730:SF1 229 424 3.0E-19 T 23-04-2016 THIMO_RS06755 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 PANTHER PTHR38730:SF1 9 212 3.0E-19 T 23-04-2016 THIMO_RS06755 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 PANTHER PTHR38730 229 424 3.0E-19 T 23-04-2016 THIMO_RS06755 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 PANTHER PTHR38730 9 212 3.0E-19 T 23-04-2016 THIMO_RS07910 80dc93cd2caaae88095ee8bb97f23243 314 SUPERFAMILY SSF56300 30 284 1.32E-19 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS07910 80dc93cd2caaae88095ee8bb97f23243 314 Pfam PF00149 Calcineurin-like phosphoesterase 32 253 1.0E-7 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 THIMO_RS07910 80dc93cd2caaae88095ee8bb97f23243 314 Gene3D G3DSA:3.60.21.10 41 258 3.4E-12 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS11005 eaaddbe0f68943364dfe6cc31d66126a 131 Pfam PF01850 PIN domain 2 119 2.6E-11 T 23-04-2016 IPR002716 PIN domain THIMO_RS11005 eaaddbe0f68943364dfe6cc31d66126a 131 Gene3D G3DSA:3.40.50.1010 2 128 2.1E-24 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS11005 eaaddbe0f68943364dfe6cc31d66126a 131 SUPERFAMILY SSF88723 2 123 1.43E-17 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 SUPERFAMILY SSF53686 4 314 7.99E-95 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 PANTHER PTHR10314 2 319 3.9E-153 T 23-04-2016 THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 303 2.2E-66 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 314 2.0E-129 T 23-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 PANTHER PTHR10314:SF110 2 319 3.9E-153 T 23-04-2016 THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 314 3.6E-135 T 23-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 Gene3D G3DSA:3.40.50.1100 136 315 1.6E-70 T 23-04-2016 THIMO_RS04395 b7fb7937a89eac9ce880f89725d76254 325 Gene3D G3DSA:3.40.50.1100 39 135 2.5E-36 T 23-04-2016 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 155 1.6E-33 T 23-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 SUPERFAMILY SSF56327 160 326 3.6E-58 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 327 54.958 T 23-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 4 321 7.3E-138 T 23-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 PANTHER PTHR23382 2 328 1.0E-181 T 23-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 Gene3D G3DSA:3.40.50.720 4 156 1.9E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 SUPERFAMILY SSF51735 4 158 1.21E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 Gene3D G3DSA:3.90.110.10 158 326 2.0E-71 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 PIRSF PIRSF000102 2 325 4.1E-62 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 THIMO_RS01150 486491c0102c0e55f6aed0c87d052bae 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 160 321 1.7E-29 T 23-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 Pfam PF01841 Transglutaminase-like superfamily 147 237 2.7E-20 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 SMART SM00460 174 239 3.7E-20 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 PANTHER PTHR33490 5 287 3.6E-58 T 23-04-2016 THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 Gene3D G3DSA:3.90.260.10 179 241 4.4E-11 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 83 2.6E-20 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 PANTHER PTHR33490:SF2 5 287 3.6E-58 T 23-04-2016 THIMO_RS07295 fcd7523c0640c6fdafa168cc74689c4a 292 SUPERFAMILY SSF54001 85 264 6.48E-38 T 23-04-2016 THIMO_RS17025 7be29bc7702e9c8de804aff5c51c9a84 184 SUPERFAMILY SSF88874 4 178 3.14E-38 T 23-04-2016 THIMO_RS17025 7be29bc7702e9c8de804aff5c51c9a84 184 Gene3D G3DSA:3.90.1340.10 3 69 2.0E-22 T 23-04-2016 IPR011083 Phage tail collar domain THIMO_RS17025 7be29bc7702e9c8de804aff5c51c9a84 184 PANTHER PTHR34720 3 184 1.7E-40 T 23-04-2016 THIMO_RS17025 7be29bc7702e9c8de804aff5c51c9a84 184 Pfam PF07484 Phage Tail Collar Domain 8 64 5.0E-19 T 23-04-2016 IPR011083 Phage tail collar domain THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 SUPERFAMILY SSF56059 328 438 7.92E-30 T 23-04-2016 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 SUPERFAMILY SSF56059 495 573 7.92E-30 T 23-04-2016 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.1490.20 338 405 1.3E-9 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 SUPERFAMILY SSF55729 79 247 8.72E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Pfam PF00583 Acetyltransferase (GNAT) family 162 244 5.5E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.40.630.30 150 259 3.7E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Pfam PF08443 RimK-like ATP-grasp domain 327 429 6.1E-9 T 23-04-2016 IPR013651 ATP-grasp fold, RimK-type THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.470.20 485 575 1.2E-16 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.470.20 319 335 1.2E-16 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.470.20 406 432 1.2E-16 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 34 576 1.4E-271 T 23-04-2016 IPR017534 GNAT-acetyltransferase THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 PANTHER PTHR23091:SF122 88 257 2.2E-23 T 23-04-2016 THIMO_RS08605 e0218c4e47464a69aab76548fa668ed0 582 PANTHER PTHR23091 88 257 2.2E-23 T 23-04-2016 THIMO_RS15710 eb59039a3f5f06ee9589c0ce03bf9f72 133 Pfam PF02657 Fe-S metabolism associated domain 6 127 7.0E-36 T 23-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 THIMO_RS15710 eb59039a3f5f06ee9589c0ce03bf9f72 133 Gene3D G3DSA:3.90.1010.10 2 129 7.0E-42 T 23-04-2016 THIMO_RS15710 eb59039a3f5f06ee9589c0ce03bf9f72 133 PANTHER PTHR12735:SF26 2 133 3.2E-30 T 23-04-2016 THIMO_RS15710 eb59039a3f5f06ee9589c0ce03bf9f72 133 SUPERFAMILY SSF82649 2 129 3.61E-34 T 23-04-2016 THIMO_RS15710 eb59039a3f5f06ee9589c0ce03bf9f72 133 PANTHER PTHR12735 2 133 3.2E-30 T 23-04-2016 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 283 1.3E-126 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 Pfam PF01039 Carboxyl transferase domain 101 240 1.7E-14 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 282 38.027 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 201 218 3.6E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 252 261 3.6E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 230 241 3.6E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 164 182 3.6E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 130 144 3.6E-39 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PANTHER PTHR22855 1 285 4.5E-158 T 23-04-2016 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 SUPERFAMILY SSF52096 26 283 5.85E-84 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 PANTHER PTHR22855:SF17 1 285 4.5E-158 T 23-04-2016 THIMO_RS12655 25c9e04f7faf45b6a9f473a105ce5a66 285 Gene3D G3DSA:3.90.226.10 20 283 1.4E-70 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 PANTHER PTHR21343 5 209 1.7E-89 T 23-04-2016 THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 175 6.3E-47 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 Gene3D G3DSA:3.40.50.300 3 209 1.5E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 208 27.966 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 PANTHER PTHR21343:SF13 5 209 1.7E-89 T 23-04-2016 THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 SUPERFAMILY SSF52540 3 209 1.0E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 Pfam PF13500 AAA domain 3 206 8.3E-41 T 23-04-2016 THIMO_RS14405 a85fbcddcdf8ab32ef06606d6dc70247 224 PIRSF PIRSF006755 1 218 1.9E-69 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 THIMO_RS09400 30462abfef9f3a09cc23fe2ff6eeb7fb 214 PANTHER PTHR11935:SF115 1 209 1.6E-113 T 23-04-2016 THIMO_RS09400 30462abfef9f3a09cc23fe2ff6eeb7fb 214 Pfam PF00753 Metallo-beta-lactamase superfamily 12 193 1.7E-29 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS09400 30462abfef9f3a09cc23fe2ff6eeb7fb 214 PANTHER PTHR11935 1 209 1.6E-113 T 23-04-2016 THIMO_RS09400 30462abfef9f3a09cc23fe2ff6eeb7fb 214 SMART SM00849 13 193 1.2E-38 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS09400 30462abfef9f3a09cc23fe2ff6eeb7fb 214 SUPERFAMILY SSF56281 2 209 2.1E-57 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS09400 30462abfef9f3a09cc23fe2ff6eeb7fb 214 Gene3D G3DSA:3.60.15.10 3 209 1.2E-58 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS12775 ec5068e07ccf335c25df6d8b9dd4d795 482 SUPERFAMILY SSF103378 15 481 1.57E-149 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 THIMO_RS12775 ec5068e07ccf335c25df6d8b9dd4d795 482 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 16 482 3.0E-248 T 23-04-2016 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79|UniPathway: UPA00946 THIMO_RS12775 ec5068e07ccf335c25df6d8b9dd4d795 482 Pfam PF03972 MmgE/PrpD family 20 462 6.2E-151 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 THIMO_RS12775 ec5068e07ccf335c25df6d8b9dd4d795 482 PANTHER PTHR16943 7 482 1.2E-249 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 THIMO_RS12775 ec5068e07ccf335c25df6d8b9dd4d795 482 Gene3D G3DSA:3.30.1330.120 289 425 1.9E-58 T 23-04-2016 THIMO_RS12775 ec5068e07ccf335c25df6d8b9dd4d795 482 PANTHER PTHR16943:SF19 7 482 1.2E-249 T 23-04-2016 THIMO_RS07720 c36021ea8a28739bf11e375aa8e174ad 181 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 8 167 7.4E-39 T 23-04-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 THIMO_RS07720 c36021ea8a28739bf11e375aa8e174ad 181 SUPERFAMILY SSF52540 6 166 4.73E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07720 c36021ea8a28739bf11e375aa8e174ad 181 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 8 143 1.3E-47 T 23-04-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 THIMO_RS07720 c36021ea8a28739bf11e375aa8e174ad 181 Gene3D G3DSA:3.40.50.300 6 170 8.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07720 c36021ea8a28739bf11e375aa8e174ad 181 PANTHER PTHR19136 7 144 1.6E-21 T 23-04-2016 THIMO_RS07720 c36021ea8a28739bf11e375aa8e174ad 181 PANTHER PTHR19136:SF82 7 144 1.6E-21 T 23-04-2016 THIMO_RS14610 a83a6d113da48f9910a3701fbff95016 527 PANTHER PTHR30250:SF0 34 527 3.1E-78 T 23-04-2016 THIMO_RS14610 a83a6d113da48f9910a3701fbff95016 527 PANTHER PTHR30250 34 527 3.1E-78 T 23-04-2016 THIMO_RS14610 a83a6d113da48f9910a3701fbff95016 527 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 361 500 2.4E-7 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain THIMO_RS14610 a83a6d113da48f9910a3701fbff95016 527 Pfam PF13440 Polysaccharide biosynthesis protein 68 359 1.7E-89 T 23-04-2016 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 Pfam PF02599 Global regulator protein family 1 52 2.4E-26 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 58 9.6E-29 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 Hamap MF_00167 Carbon storage regulator [csrA]. 1 68 21.323 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 PANTHER PTHR34984 1 64 6.0E-32 T 23-04-2016 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 49 7.0E-20 T 23-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 PANTHER PTHR34984:SF1 1 64 6.0E-32 T 23-04-2016 THIMO_RS11600 f663fd46b04575e8d3d952d70183c95a 72 SUPERFAMILY SSF117130 1 54 1.57E-20 T 23-04-2016 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 SUPERFAMILY SSF143800 1 65 1.37E-28 T 23-04-2016 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 PANTHER PTHR33280:SF2 1 65 6.9E-41 T 23-04-2016 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 Pfam PF01197 Ribosomal protein L31 1 65 1.8E-34 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 PRINTS PR01249 Ribosomal protein L31 signature 31 46 5.8E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.8E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 PRINTS PR01249 Ribosomal protein L31 signature 46 64 5.8E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 9.7E-36 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 PANTHER PTHR33280 1 65 6.9E-41 T 23-04-2016 THIMO_RS00375 d43c68174bcdf4e6356a478eda593ee8 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 29.682 T 23-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 TIGRFAM TIGR02026 BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2 491 2.7E-230 T 23-04-2016 IPR011772 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase GO:0015995|GO:0016709|GO:0050661|GO:0055114 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.- THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 Gene3D G3DSA:3.80.30.20 200 393 4.7E-37 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 Pfam PF02310 B12 binding domain 14 131 2.6E-20 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 SMART SM00729 195 406 1.8E-28 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 PANTHER PTHR11918 16 408 9.2E-149 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 SUPERFAMILY SSF102114 200 396 4.58E-37 T 23-04-2016 THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 Pfam PF04055 Radical SAM superfamily 201 362 1.0E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS02325 43131d68a14033a3efd2bd18f4d5c596 550 PANTHER PTHR11918:SF70 16 408 9.2E-149 T 23-04-2016 THIMO_RS07890 add0b84909f4aa87795424b71ed77084 134 SUPERFAMILY SSF101738 1 112 7.72E-45 T 23-04-2016 IPR007481 Stringent starvation protein B THIMO_RS07890 add0b84909f4aa87795424b71ed77084 134 PANTHER PTHR37486 1 134 2.4E-56 T 23-04-2016 THIMO_RS07890 add0b84909f4aa87795424b71ed77084 134 Gene3D G3DSA:2.30.30.220 1 105 6.8E-45 T 23-04-2016 IPR007481 Stringent starvation protein B THIMO_RS07890 add0b84909f4aa87795424b71ed77084 134 PANTHER PTHR37486:SF1 1 134 2.4E-56 T 23-04-2016 THIMO_RS07890 add0b84909f4aa87795424b71ed77084 134 PIRSF PIRSF005276 1 134 7.0E-50 T 23-04-2016 IPR007481 Stringent starvation protein B THIMO_RS07890 add0b84909f4aa87795424b71ed77084 134 Pfam PF04386 Stringent starvation protein B 3 133 1.5E-32 T 23-04-2016 IPR007481 Stringent starvation protein B THIMO_RS05375 419f34a5908f25914b7ed2d1a1d61615 306 PANTHER PTHR30217:SF8 6 295 2.5E-93 T 23-04-2016 THIMO_RS05375 419f34a5908f25914b7ed2d1a1d61615 306 PANTHER PTHR30217 6 295 2.5E-93 T 23-04-2016 THIMO_RS05375 419f34a5908f25914b7ed2d1a1d61615 306 Pfam PF01136 Peptidase family U32 95 269 6.2E-17 T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 Gene3D G3DSA:1.10.150.130 127 213 1.6E-7 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 Pfam PF00589 Phage integrase family 223 423 1.2E-46 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 SUPERFAMILY SSF56349 124 423 5.59E-46 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 TIGRFAM TIGR02249 integrase_gron: integron integrase 118 436 5.5E-127 T 23-04-2016 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 118 207 3.7E-24 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 Gene3D G3DSA:1.10.443.10 223 424 2.4E-50 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 PANTHER PTHR30349:SF28 316 425 1.0E-106 T 23-04-2016 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 PANTHER PTHR30349:SF28 47 298 1.0E-106 T 23-04-2016 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 PANTHER PTHR30349 316 425 1.0E-106 T 23-04-2016 THIMO_RS16780 ff7fd490d5f2dc14a19403281dfeb5f3 438 PANTHER PTHR30349 47 298 1.0E-106 T 23-04-2016 THIMO_RS15515 18158578436162d66d915198520a7174 264 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 13 248 36.727 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 THIMO_RS15515 18158578436162d66d915198520a7174 264 PANTHER PTHR10108:SF902 7 243 4.4E-67 T 23-04-2016 THIMO_RS15515 18158578436162d66d915198520a7174 264 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 15 242 1.6E-73 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 THIMO_RS15515 18158578436162d66d915198520a7174 264 Pfam PF08241 Methyltransferase domain 71 166 5.9E-21 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS15515 18158578436162d66d915198520a7174 264 Gene3D G3DSA:3.40.50.150 37 209 2.1E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS15515 18158578436162d66d915198520a7174 264 SUPERFAMILY SSF53335 17 247 6.31E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS15515 18158578436162d66d915198520a7174 264 PANTHER PTHR10108 7 243 4.4E-67 T 23-04-2016 THIMO_RS15325 eaf5fe8060f497c59fbc962909fc6fb7 98 Gene3D G3DSA:3.40.1620.10 17 63 1.5E-20 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS15325 eaf5fe8060f497c59fbc962909fc6fb7 98 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 18 64 6.6E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS15325 eaf5fe8060f497c59fbc962909fc6fb7 98 SUPERFAMILY SSF143120 18 63 1.24E-9 T 23-04-2016 THIMO_RS15325 eaf5fe8060f497c59fbc962909fc6fb7 98 PANTHER PTHR33713 18 94 5.4E-15 T 23-04-2016 THIMO_RS15325 eaf5fe8060f497c59fbc962909fc6fb7 98 PANTHER PTHR33713:SF4 18 94 5.4E-15 T 23-04-2016 THIMO_RS15325 eaf5fe8060f497c59fbc962909fc6fb7 98 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 18 62 5.3E-13 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 PANTHER PTHR11819:SF159 357 584 3.9E-203 T 23-04-2016 THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 PANTHER PTHR11819:SF159 4 308 3.9E-203 T 23-04-2016 THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 PANTHER PTHR11819 357 584 3.9E-203 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 PANTHER PTHR11819 4 308 3.9E-203 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 7 584 2.3E-260 T 23-04-2016 IPR019899 Sodium/solute symporter, VC2705 subfamily THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 Pfam PF00474 Sodium:solute symporter family 33 296 1.4E-35 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS06195 faa2eac08f1723cf30c6aed91a28ad3b 593 Pfam PF00474 Sodium:solute symporter family 392 509 1.3E-15 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 THIMO_RS05845 a3b39e8d30888b119ff78fada37b08a3 327 PANTHER PTHR10277 12 258 4.7E-26 T 23-04-2016 THIMO_RS05845 a3b39e8d30888b119ff78fada37b08a3 327 Pfam PF00682 HMGL-like 14 256 3.0E-24 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 THIMO_RS05845 a3b39e8d30888b119ff78fada37b08a3 327 PANTHER PTHR10277:SF3 12 258 4.7E-26 T 23-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 THIMO_RS05845 a3b39e8d30888b119ff78fada37b08a3 327 Gene3D G3DSA:3.20.20.70 11 263 1.2E-31 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS05845 a3b39e8d30888b119ff78fada37b08a3 327 SUPERFAMILY SSF51569 7 272 9.71E-39 T 23-04-2016 THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 Gene3D G3DSA:3.40.30.10 2 166 2.3E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 PANTHER PTHR10681:SF81 3 165 3.1E-45 T 23-04-2016 THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 SUPERFAMILY SSF52833 1 163 1.87E-39 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 Pfam PF08534 Redoxin 20 162 8.4E-25 T 23-04-2016 IPR013740 Redoxin GO:0016491 THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 PANTHER PTHR10681 3 165 3.1E-45 T 23-04-2016 THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 Hamap MF_00269 Probable thiol peroxidase [tpx]. 3 166 37.905 T 23-04-2016 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 THIMO_RS08010 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 23-04-2016 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Gene3D G3DSA:3.30.465.10 311 354 8.6E-5 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Pfam PF00571 CBS domain 270 320 2.2E-7 T 23-04-2016 IPR000644 CBS domain THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 SUPERFAMILY SSF54631 188 331 1.89E-21 T 23-04-2016 THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Pfam PF01595 Domain of unknown function DUF21 7 184 1.4E-29 T 23-04-2016 IPR002550 Domain of unknown function DUF21 THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Gene3D G3DSA:3.10.580.10 186 310 6.1E-13 T 23-04-2016 THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 PANTHER PTHR22777 4 351 7.6E-114 T 23-04-2016 THIMO_RS16830 dc3ebbe8cb85e07d6b5218cbe27c816b 373 PANTHER PTHR22777:SF4 4 351 7.6E-114 T 23-04-2016 THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 Pfam PF04358 DsrC like protein 107 210 3.4E-31 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 PANTHER PTHR37010:SF1 104 206 1.7E-24 T 23-04-2016 THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 Gene3D G3DSA:3.30.1420.10 112 141 1.9E-9 T 23-04-2016 THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 SUPERFAMILY SSF69721 103 207 3.01E-25 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 PANTHER PTHR37010 104 206 1.7E-24 T 23-04-2016 THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 106 207 3.5E-25 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS16015 4263923d254a4e43c6067bbb4370c2ce 213 Gene3D G3DSA:1.10.10.370 142 210 5.0E-20 T 23-04-2016 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 SUPERFAMILY SSF102114 61 233 5.49E-27 T 23-04-2016 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 PANTHER PTHR30352:SF4 44 205 6.6E-33 T 23-04-2016 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 Pfam PF04055 Radical SAM superfamily 63 209 1.7E-17 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 Gene3D G3DSA:3.20.20.70 58 231 1.3E-24 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 Pfam PF13353 4Fe-4S single cluster domain 58 133 2.9E-8 T 23-04-2016 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 PANTHER PTHR30352 44 205 6.6E-33 T 23-04-2016 THIMO_RS16500 c741e73bcc06902f83229f2de8f804ee 270 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 44 232 6.7E-59 T 23-04-2016 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 SMART SM00471 175 312 1.8E-13 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 SUPERFAMILY SSF109604 162 342 4.57E-43 T 23-04-2016 THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 Gene3D G3DSA:1.10.3210.10 174 325 3.0E-23 T 23-04-2016 IPR006674 HD domain THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 SMART SM00448 11 126 1.3E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 Gene3D G3DSA:3.40.50.2300 9 143 7.9E-31 T 23-04-2016 THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 Pfam PF01966 HD domain 180 302 4.0E-20 T 23-04-2016 IPR006674 HD domain THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 Pfam PF00072 Response regulator receiver domain 13 125 4.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 PANTHER PTHR26402 11 170 2.9E-25 T 23-04-2016 THIMO_RS08060 c54c1d4360ead41cf211590a3c77a3a9 369 SUPERFAMILY SSF52172 8 137 3.56E-29 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 Gene3D G3DSA:3.40.50.300 100 292 9.4E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 SUPERFAMILY SSF52540 85 295 8.74E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 PANTHER PTHR24220:SF565 84 324 2.3E-89 T 23-04-2016 THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 SMART SM00382 107 291 2.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 PANTHER PTHR24220 84 324 2.3E-89 T 23-04-2016 THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 ProSitePatterns PS00211 ABC transporters family signature. 220 234 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS09545 df4e0b657af4535f4064a87c0fd44523 332 Pfam PF00005 ABC transporter 100 247 1.2E-13 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 PANTHER PTHR12227:SF0 48 416 1.1E-72 T 23-04-2016 THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 SUPERFAMILY SSF82544 12 416 1.01E-96 T 23-04-2016 THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 Gene3D G3DSA:3.40.50.10180 18 220 4.5E-52 T 23-04-2016 THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 Gene3D G3DSA:3.40.1480.10 255 416 8.2E-44 T 23-04-2016 IPR007835 MOFRL domain THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 Pfam PF13660 Domain of unknown function (DUF4147) 19 218 6.2E-44 T 23-04-2016 IPR025286 MOFRL-associated domain THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 Pfam PF05161 MOFRL family 307 411 6.4E-34 T 23-04-2016 IPR007835 MOFRL domain THIMO_RS09630 1aef0c07a8afa921c70eb5b9eb035e39 419 PANTHER PTHR12227 48 416 1.1E-72 T 23-04-2016 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 5.5E-30 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 SUPERFAMILY SSF46557 3 78 1.57E-27 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 32.572 T 23-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.8E-55 T 23-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Gene3D G3DSA:3.10.50.30 82 157 4.0E-29 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 SUPERFAMILY SSF54534 82 157 1.44E-22 T 23-04-2016 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Gene3D G3DSA:1.10.287.180 1 75 4.0E-33 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 PIRSF PIRSF006092 1 158 2.3E-49 T 23-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 PANTHER PTHR30437 1 157 1.9E-62 T 23-04-2016 THIMO_RS01425 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 1.4E-26 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 THIMO_RS15795 46d8962ce62288ce41614de4af773079 145 Pfam PF13279 Thioesterase-like superfamily 13 133 2.3E-10 T 23-04-2016 THIMO_RS15795 46d8962ce62288ce41614de4af773079 145 Gene3D G3DSA:3.10.129.10 6 135 2.0E-36 T 23-04-2016 IPR029069 HotDog domain THIMO_RS15795 46d8962ce62288ce41614de4af773079 145 SUPERFAMILY SSF54637 6 134 1.15E-30 T 23-04-2016 IPR029069 HotDog domain THIMO_RS14525 14edd9519436c655873db6c712f14b1f 188 PANTHER PTHR21047 4 175 5.3E-70 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 THIMO_RS14525 14edd9519436c655873db6c712f14b1f 188 Gene3D G3DSA:2.60.120.10 3 177 6.1E-74 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS14525 14edd9519436c655873db6c712f14b1f 188 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 176 5.0E-59 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 THIMO_RS14525 14edd9519436c655873db6c712f14b1f 188 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 174 5.4E-69 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 THIMO_RS14525 14edd9519436c655873db6c712f14b1f 188 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 175 3.3E-71 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 THIMO_RS14525 14edd9519436c655873db6c712f14b1f 188 SUPERFAMILY SSF51182 3 178 7.33E-71 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS06395 3ce56a8e1d632f869f0210f3bc6f57a0 78 PANTHER PTHR33571 5 77 1.5E-14 T 23-04-2016 THIMO_RS06395 3ce56a8e1d632f869f0210f3bc6f57a0 78 Pfam PF01909 Nucleotidyltransferase domain 12 69 1.9E-5 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS06395 3ce56a8e1d632f869f0210f3bc6f57a0 78 Gene3D G3DSA:3.30.460.10 10 78 2.8E-13 T 23-04-2016 THIMO_RS06395 3ce56a8e1d632f869f0210f3bc6f57a0 78 SUPERFAMILY SSF81301 5 75 9.22E-11 T 23-04-2016 THIMO_RS17155 e73ef611c46a264c433fdd725b88677f 179 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 61 175 3.6E-28 T 23-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal THIMO_RS17155 e73ef611c46a264c433fdd725b88677f 179 Pfam PF13975 gag-polyprotein putative aspartyl protease 75 162 5.6E-24 T 23-04-2016 THIMO_RS17155 e73ef611c46a264c433fdd725b88677f 179 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 84 95 - T 23-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 THIMO_RS17155 e73ef611c46a264c433fdd725b88677f 179 SUPERFAMILY SSF50630 63 165 3.0E-20 T 23-04-2016 IPR021109 Aspartic peptidase domain THIMO_RS17155 e73ef611c46a264c433fdd725b88677f 179 PANTHER PTHR41535:SF1 14 179 3.8E-26 T 23-04-2016 THIMO_RS17155 e73ef611c46a264c433fdd725b88677f 179 PANTHER PTHR41535 14 179 3.8E-26 T 23-04-2016 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 66 9.1E-15 T 23-04-2016 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.4E-5 T 23-04-2016 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 351 1.4E-5 T 23-04-2016 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 Gene3D G3DSA:3.50.50.60 103 104 1.9E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 Gene3D G3DSA:3.50.50.60 209 347 1.9E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 Gene3D G3DSA:3.50.50.60 1 56 1.9E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 PANTHER PTHR10668:SF67 2 493 1.3E-149 T 23-04-2016 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 SUPERFAMILY SSF51905 455 493 1.85E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 SUPERFAMILY SSF51905 1 331 1.85E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS00760 d9bad206e6e8ec7be84e1c5ca4458d29 506 PANTHER PTHR10668 2 493 1.3E-149 T 23-04-2016 THIMO_RS14615 a3dd0bafa994aaa3af42d4d6ac1b28b5 421 Pfam PF04230 Polysaccharide pyruvyl transferase 11 345 1.2E-31 T 23-04-2016 IPR007345 Polysaccharide pyruvyl transferase THIMO_RS14615 a3dd0bafa994aaa3af42d4d6ac1b28b5 421 PANTHER PTHR36836 10 420 1.7E-23 T 23-04-2016 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 341 350 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 SUPERFAMILY SSF47917 363 417 2.56E-6 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 PANTHER PTHR15184 5 456 4.3E-225 T 23-04-2016 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 350 6.9E-64 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 PANTHER PTHR15184:SF11 5 456 4.3E-225 T 23-04-2016 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 Gene3D G3DSA:1.10.1140.10 363 416 2.4E-6 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 SUPERFAMILY SSF52540 79 355 4.65E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 3 459 52.884 T 23-04-2016 IPR022879 V-type ATP synthase regulatory subunit B/beta THIMO_RS07120 59421cef5a8799a50fd0a1739221a0ab 459 Gene3D G3DSA:3.40.50.300 77 355 1.2E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 SUPERFAMILY SSF46894 135 196 1.28E-17 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 196 3.6E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 SMART SM00448 5 116 1.1E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 Gene3D G3DSA:3.40.50.2300 4 143 3.5E-37 T 23-04-2016 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 SUPERFAMILY SSF52172 4 154 3.56E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 Gene3D G3DSA:1.10.10.10 144 197 6.4E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 SMART SM00421 140 197 6.9E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 PANTHER PTHR26402:SF613 5 198 1.3E-59 T 23-04-2016 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 3.0E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 3.0E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 3.0E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 PANTHER PTHR26402 5 198 1.3E-59 T 23-04-2016 THIMO_RS11795 cc1777919d2b1ef13cc538a88c50f3ce 205 Pfam PF00072 Response regulator receiver domain 7 117 2.5E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 PANTHER PTHR24220 3 189 5.4E-77 T 23-04-2016 THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 SMART SM00382 26 204 2.2E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 SUPERFAMILY SSF52540 2 189 1.96E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 Gene3D G3DSA:3.40.50.300 1 189 2.6E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 PANTHER PTHR24220:SF508 3 189 5.4E-77 T 23-04-2016 THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 201 1.4E-69 T 23-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 THIMO_RS06505 3b63578cc24a603a410ce3db53fd8652 207 Pfam PF00005 ABC transporter 20 158 2.4E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS18235 1105e2405ef0f7f72181ecc5bf40cc6f 264 Gene3D G3DSA:3.40.630.30 34 221 9.7E-26 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS18235 1105e2405ef0f7f72181ecc5bf40cc6f 264 TIGRFAM TIGR03694 exosort_acyl: N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated 20 239 3.3E-48 T 23-04-2016 IPR022484 PEP-CTERM/exosortase system-associated acyltransferase, predicted THIMO_RS18235 1105e2405ef0f7f72181ecc5bf40cc6f 264 SUPERFAMILY SSF55729 32 224 7.04E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS18235 1105e2405ef0f7f72181ecc5bf40cc6f 264 Pfam PF13444 Acetyltransferase (GNAT) domain 39 138 7.3E-12 T 23-04-2016 THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 PANTHER PTHR38768 1 220 5.4E-64 T 23-04-2016 THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 SUPERFAMILY SSF46785 92 172 1.18E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 Hamap MF_01584 UPF0502 protein YceH [yceH]. 12 209 28.907 T 23-04-2016 IPR007432 Protein of unknown function DUF480 THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 SUPERFAMILY SSF46785 9 89 1.54E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 Gene3D G3DSA:1.10.10.10 6 94 5.9E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 PANTHER PTHR38768:SF1 1 220 5.4E-64 T 23-04-2016 THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 Gene3D G3DSA:1.10.10.10 97 172 9.0E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13880 9dad443df947f61b0cdc03f6def300ec 220 Pfam PF04337 Protein of unknown function, DUF480 12 157 4.6E-54 T 23-04-2016 IPR007432 Protein of unknown function DUF480 THIMO_RS03720 201e31b99aba6dceb237de6f5ec4613a 216 Pfam PF02665 Nitrate reductase gamma subunit 76 163 8.1E-5 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS03720 201e31b99aba6dceb237de6f5ec4613a 216 SUPERFAMILY SSF103501 8 201 4.05E-26 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS03720 201e31b99aba6dceb237de6f5ec4613a 216 Gene3D G3DSA:1.20.950.20 11 163 1.9E-9 T 23-04-2016 THIMO_RS03720 201e31b99aba6dceb237de6f5ec4613a 216 Gene3D G3DSA:1.20.950.20 171 201 1.9E-5 T 23-04-2016 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 Gene3D G3DSA:3.40.50.2300 1 122 1.2E-33 T 23-04-2016 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 PANTHER PTHR26402:SF578 1 223 1.5E-93 T 23-04-2016 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 SUPERFAMILY SSF52172 1 180 1.09E-31 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 Gene3D G3DSA:1.10.10.10 123 223 2.3E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.3E-27 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 SMART SM00448 1 112 6.9E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 Pfam PF00072 Response regulator receiver domain 3 112 4.7E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 PANTHER PTHR26402 1 223 1.5E-93 T 23-04-2016 THIMO_RS16905 99b7984d889bf206358943531c949cd1 225 SMART SM00862 146 221 4.2E-30 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS17535 87477a9039eeedfab88ed91eedf9561f 192 Gene3D G3DSA:2.60.60.30 19 180 4.7E-46 T 23-04-2016 THIMO_RS17535 87477a9039eeedfab88ed91eedf9561f 192 PANTHER PTHR32097:SF7 1 191 1.2E-56 T 23-04-2016 THIMO_RS17535 87477a9039eeedfab88ed91eedf9561f 192 PANTHER PTHR32097 1 191 1.2E-56 T 23-04-2016 THIMO_RS17535 87477a9039eeedfab88ed91eedf9561f 192 Pfam PF02342 TerD domain 1 183 5.6E-50 T 23-04-2016 IPR003325 TerD domain GO:0006950 THIMO_RS04520 0d4a0a84c53fdaaf27998e051063a5bf 94 SUPERFAMILY SSF89155 7 68 9.07E-8 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 467 59.059 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 Gene3D G3DSA:3.40.1060.10 168 280 4.3E-37 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 Pfam PF00330 Aconitase family (aconitate hydratase) 8 459 4.0E-148 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PANTHER PTHR11670 328 467 3.2E-282 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PANTHER PTHR11670 4 308 3.2E-282 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 Gene3D G3DSA:3.30.499.10 336 466 6.9E-59 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 Gene3D G3DSA:3.30.499.10 294 304 6.9E-59 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 SUPERFAMILY SSF53732 4 466 2.09E-160 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 83 96 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 287 301 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 344 355 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 134 149 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 196 209 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 120 133 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 109 117 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 210 223 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 401 414 1.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 Gene3D G3DSA:3.30.499.10 6 157 6.8E-20 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 467 1.6E-236 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PANTHER PTHR11670:SF38 328 467 3.2E-282 T 23-04-2016 THIMO_RS12700 5f34e922ea2512aeead2c6eaae349ca3 467 PANTHER PTHR11670:SF38 4 308 3.2E-282 T 23-04-2016 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 PRINTS PR00956 Flagellar motor switch protein FliN signature 28 44 4.2E-28 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 89 4.2E-28 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 PRINTS PR00956 Flagellar motor switch protein FliN signature 61 74 4.2E-28 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 PRINTS PR00956 Flagellar motor switch protein FliN signature 45 61 4.2E-28 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 29 98 5.9E-26 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 PANTHER PTHR22617 5 107 3.1E-28 T 23-04-2016 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 Gene3D G3DSA:2.30.330.10 18 108 2.0E-36 T 23-04-2016 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 25 99 9.2E-32 T 23-04-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 THIMO_RS01335 e7eb4f2c4844f407080c3696f281e843 110 SUPERFAMILY SSF101801 24 107 1.06E-24 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) THIMO_RS16825 db72e0c48a50db577b3a3217d5c8a946 73 Gene3D G3DSA:1.10.287.660 3 69 3.0E-20 T 23-04-2016 IPR029012 Helix hairpin bin domain THIMO_RS16825 db72e0c48a50db577b3a3217d5c8a946 73 PIRSF PIRSF037676 1 70 7.8E-19 T 23-04-2016 IPR007774 Putative nitrogen fixation protein THIMO_RS16825 db72e0c48a50db577b3a3217d5c8a946 73 Pfam PF05082 Rop-like 5 68 4.2E-24 T 23-04-2016 IPR007774 Putative nitrogen fixation protein THIMO_RS14510 404d95ed25c9185aafb233a427896f3c 261 Hamap MF_00055 MEMO1 family protein . 3 261 48.17 T 23-04-2016 IPR002737 MEMO1 family THIMO_RS14510 404d95ed25c9185aafb233a427896f3c 261 PANTHER PTHR11060 1 260 6.6E-63 T 23-04-2016 IPR002737 MEMO1 family THIMO_RS14510 404d95ed25c9185aafb233a427896f3c 261 Pfam PF01875 Memo-like protein 6 258 1.5E-53 T 23-04-2016 IPR002737 MEMO1 family THIMO_RS14510 404d95ed25c9185aafb233a427896f3c 261 TIGRFAM TIGR04336 AmmeMemoSam_B: AmmeMemoRadiSam system protein B 5 260 8.8E-82 T 23-04-2016 IPR002737 MEMO1 family THIMO_RS14510 404d95ed25c9185aafb233a427896f3c 261 PANTHER PTHR11060:SF0 1 260 6.6E-63 T 23-04-2016 THIMO_RS09865 2707b011bea46b1e06d5f1439f641794 61 Pfam PF13751 Transposase DDE domain 1 59 3.2E-13 T 23-04-2016 IPR025668 Transposase DDE domain THIMO_RS07140 7520cf66d98563d8b74274250888ba5f 152 Hamap MF_01396 ATP synthase subunit c [atpH]. 87 151 10.236 T 23-04-2016 THIMO_RS07140 7520cf66d98563d8b74274250888ba5f 152 Pfam PF00137 ATP synthase subunit C 89 148 1.9E-14 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 THIMO_RS07140 7520cf66d98563d8b74274250888ba5f 152 SUPERFAMILY SSF81333 83 150 4.84E-14 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 THIMO_RS07140 7520cf66d98563d8b74274250888ba5f 152 Gene3D G3DSA:1.20.120.610 73 151 3.0E-16 T 23-04-2016 THIMO_RS07140 7520cf66d98563d8b74274250888ba5f 152 PRINTS PR00124 ATP synthase C subunit signature 86 105 3.0E-5 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 THIMO_RS07140 7520cf66d98563d8b74274250888ba5f 152 PRINTS PR00124 ATP synthase C subunit signature 124 149 3.0E-5 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 Pfam PF00462 Glutaredoxin 4 63 4.1E-22 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 PRINTS PR00160 Glutaredoxin signature 4 22 1.9E-14 T 23-04-2016 IPR014025 Glutaredoxin subgroup THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 PRINTS PR00160 Glutaredoxin signature 46 59 1.9E-14 T 23-04-2016 IPR014025 Glutaredoxin subgroup THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 PRINTS PR00160 Glutaredoxin signature 60 73 1.9E-14 T 23-04-2016 IPR014025 Glutaredoxin subgroup THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 Gene3D G3DSA:3.40.30.10 1 73 2.0E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 80 3.4E-33 T 23-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 SUPERFAMILY SSF52833 1 83 3.25E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 THIMO_RS07925 fe4db5c445ab98be827671a96c33baf4 84 PANTHER PTHR10168 3 84 2.6E-27 T 23-04-2016 THIMO_RS00045 2461d1777bbbc523d1e2a9a3cbcd18cf 529 PANTHER PTHR33678 19 505 3.3E-59 T 23-04-2016 THIMO_RS00045 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13817 IS66 C-terminal element 469 505 1.3E-11 T 23-04-2016 THIMO_RS00045 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13007 Transposase C of IS166 homeodomain 28 85 2.3E-8 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain THIMO_RS00045 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF03050 Transposase IS66 family 174 463 5.0E-76 T 23-04-2016 IPR004291 Transposase, IS66 THIMO_RS00045 2461d1777bbbc523d1e2a9a3cbcd18cf 529 PANTHER PTHR33678:SF1 19 505 3.3E-59 T 23-04-2016 THIMO_RS08870 d1db7db6ecc2c198d98b61955bdd9954 389 PANTHER PTHR16254 1 371 1.6E-66 T 23-04-2016 THIMO_RS08870 d1db7db6ecc2c198d98b61955bdd9954 389 Pfam PF00999 Sodium/hydrogen exchanger family 12 368 6.5E-47 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 THIMO_RS04040 8de94435ae55fdf6c938565840ad8e7e 112 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 98 1.6E-18 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS04040 8de94435ae55fdf6c938565840ad8e7e 112 PANTHER PTHR33937 1 112 1.3E-23 T 23-04-2016 THIMO_RS04040 8de94435ae55fdf6c938565840ad8e7e 112 SUPERFAMILY SSF53146 1 111 2.09E-27 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS04040 8de94435ae55fdf6c938565840ad8e7e 112 PANTHER PTHR33937:SF3 1 112 1.3E-23 T 23-04-2016 THIMO_RS04040 8de94435ae55fdf6c938565840ad8e7e 112 Gene3D G3DSA:3.30.420.130 1 102 2.0E-24 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS07760 29a385606005a156400bd99938ad3421 127 PANTHER PTHR36114 37 118 7.1E-13 T 23-04-2016 THIMO_RS07760 29a385606005a156400bd99938ad3421 127 Gene3D G3DSA:2.60.120.10 12 113 2.5E-18 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS07760 29a385606005a156400bd99938ad3421 127 SUPERFAMILY SSF51182 17 118 2.41E-19 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS07760 29a385606005a156400bd99938ad3421 127 Pfam PF07883 Cupin domain 43 111 3.7E-8 T 23-04-2016 IPR013096 Cupin 2, conserved barrel THIMO_RS07760 29a385606005a156400bd99938ad3421 127 PANTHER PTHR36114:SF3 37 118 7.1E-13 T 23-04-2016 THIMO_RS15585 ee799742ebf62c79619f66579d924427 229 Pfam PF04340 Protein of unknown function, DUF484 14 220 1.7E-46 T 23-04-2016 IPR007435 Protein of unknown function DUF484 THIMO_RS15585 ee799742ebf62c79619f66579d924427 229 PANTHER PTHR38765 3 229 2.2E-34 T 23-04-2016 THIMO_RS13745 778d8e52bdd6a9cc3003cce30558c703 176 PANTHER PTHR36966 1 176 1.4E-33 T 23-04-2016 THIMO_RS13745 778d8e52bdd6a9cc3003cce30558c703 176 Pfam PF01797 Transposase IS200 like 12 130 3.2E-11 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13745 778d8e52bdd6a9cc3003cce30558c703 176 SMART SM01321 8 131 5.5E-40 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13745 778d8e52bdd6a9cc3003cce30558c703 176 Gene3D G3DSA:3.30.70.1290 5 135 7.0E-21 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13745 778d8e52bdd6a9cc3003cce30558c703 176 SUPERFAMILY SSF143422 1 136 2.09E-35 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS13745 778d8e52bdd6a9cc3003cce30558c703 176 PANTHER PTHR36966:SF1 1 176 1.4E-33 T 23-04-2016 THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 SMART SM00382 71 252 4.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 Gene3D G3DSA:3.40.50.300 46 275 1.7E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 ProSitePatterns PS00211 ABC transporters family signature. 180 194 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 PANTHER PTHR24220 48 282 2.2E-125 T 23-04-2016 THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 Pfam PF00005 ABC transporter 64 208 1.0E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 SUPERFAMILY SSF52540 46 270 5.43E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05995 966a1a8ea6bc17cafba9ba63b9342f92 301 PANTHER PTHR24220:SF581 48 282 2.2E-125 T 23-04-2016 THIMO_RS07980 eac05816415e85365c0e64dd97e91cd5 378 PANTHER PTHR30294 6 368 1.1E-92 T 23-04-2016 THIMO_RS07980 eac05816415e85365c0e64dd97e91cd5 378 PANTHER PTHR30294:SF17 6 368 1.1E-92 T 23-04-2016 THIMO_RS07980 eac05816415e85365c0e64dd97e91cd5 378 Pfam PF12698 ABC-2 family transporter protein 30 369 1.2E-36 T 23-04-2016 THIMO_RS04460 6849102f3e5c88ba46be99f2e1b95d5d 137 Pfam PF09945 Predicted membrane protein (DUF2177) 7 128 6.7E-45 T 23-04-2016 IPR018687 Protein of unknown function DUF2177, membrane THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 Gene3D G3DSA:3.40.190.10 158 276 3.9E-16 T 23-04-2016 THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 SUPERFAMILY SSF53850 33 496 2.35E-98 T 23-04-2016 THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 PIRSF PIRSF002741 16 502 1.5E-67 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 Gene3D G3DSA:3.10.105.10 277 473 6.8E-50 T 23-04-2016 THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 Gene3D G3DSA:3.90.76.10 70 157 7.6E-9 T 23-04-2016 THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 92 408 1.7E-48 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain THIMO_RS08095 ef2fc24a517fa307e27156bd8cc1e02f 512 PANTHER PTHR30290 2 509 1.2E-93 T 23-04-2016 THIMO_RS10930 c6be862ad39652f27be1d4debc30f521 275 Pfam PF00494 Squalene/phytoene synthase 16 254 9.1E-25 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 THIMO_RS10930 c6be862ad39652f27be1d4debc30f521 275 Gene3D G3DSA:1.10.600.10 18 267 2.1E-9 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS10930 c6be862ad39652f27be1d4debc30f521 275 SUPERFAMILY SSF48576 17 270 1.44E-28 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS08530 c36895b7c5a2258bc7f3e1bb787cde5a 107 PANTHER PTHR34703 1 96 1.1E-33 T 23-04-2016 THIMO_RS08530 c36895b7c5a2258bc7f3e1bb787cde5a 107 Pfam PF03334 Na+/H+ antiporter subunit 10 91 3.7E-26 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 THIMO_RS08530 c36895b7c5a2258bc7f3e1bb787cde5a 107 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 10 98 2.0E-28 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 THIMO_RS08530 c36895b7c5a2258bc7f3e1bb787cde5a 107 PANTHER PTHR34703:SF1 1 96 1.1E-33 T 23-04-2016 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 PANTHER PTHR30221 60 446 5.6E-94 T 23-04-2016 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 SUPERFAMILY SSF50182 248 314 1.47E-15 T 23-04-2016 IPR010920 LSM domain THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 Pfam PF00924 Mechanosensitive ion channel 210 405 1.1E-42 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 Gene3D G3DSA:2.30.30.60 264 313 5.0E-14 T 23-04-2016 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 SUPERFAMILY SSF82689 318 416 6.28E-23 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 PANTHER PTHR30221:SF1 60 446 5.6E-94 T 23-04-2016 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 Gene3D G3DSA:3.30.70.100 318 403 5.1E-21 T 23-04-2016 THIMO_RS11800 e000e4b984c967cfd85843af5b19a212 501 Pfam PF04972 BON domain 72 136 7.8E-11 T 23-04-2016 IPR007055 BON domain THIMO_RS15615 e96e59f6c28ab3912330e2458c6a3c35 120 PANTHER PTHR35303 1 115 1.5E-49 T 23-04-2016 THIMO_RS15615 e96e59f6c28ab3912330e2458c6a3c35 120 PANTHER PTHR35303:SF1 1 115 1.5E-49 T 23-04-2016 THIMO_RS15615 e96e59f6c28ab3912330e2458c6a3c35 120 Pfam PF06155 Protein of unknown function (DUF971) 8 91 6.9E-31 T 23-04-2016 IPR010376 Domain of unknown function DUF971 Reactome: REACT_13|UniPathway: UPA00118 THIMO_RS05990 bb1dae962db2566d529aeb495bcc6a2f 379 Pfam PF00950 ABC 3 transport family 9 274 1.4E-73 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 THIMO_RS05990 bb1dae962db2566d529aeb495bcc6a2f 379 SUPERFAMILY SSF81345 13 269 2.22E-26 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS05990 bb1dae962db2566d529aeb495bcc6a2f 379 PANTHER PTHR30477 1 307 8.0E-104 T 23-04-2016 THIMO_RS05990 bb1dae962db2566d529aeb495bcc6a2f 379 PANTHER PTHR30477:SF3 1 307 8.0E-104 T 23-04-2016 THIMO_RS05990 bb1dae962db2566d529aeb495bcc6a2f 379 Gene3D G3DSA:1.10.3470.10 46 263 8.5E-8 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS11010 4d91a60846e8dc3c00c272a56f9339e1 131 PANTHER PTHR37421:SF1 1 129 1.7E-45 T 23-04-2016 THIMO_RS11010 4d91a60846e8dc3c00c272a56f9339e1 131 PIRSF PIRSF006173 1 131 4.2E-50 T 23-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 THIMO_RS11010 4d91a60846e8dc3c00c272a56f9339e1 131 PANTHER PTHR37421 1 129 1.7E-45 T 23-04-2016 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PANTHER PTHR24423 18 26 3.4E-81 T 23-04-2016 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 Gene3D G3DSA:1.10.287.130 323 378 5.1E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 Gene3D G3DSA:3.30.565.10 379 540 2.7E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 SUPERFAMILY SSF47384 316 390 9.61E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 Gene3D G3DSA:3.30.450.20 215 245 4.5E-4 T 23-04-2016 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 SMART SM00387 435 542 3.5E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PANTHER PTHR24423:SF483 18 26 3.4E-81 T 23-04-2016 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PANTHER PTHR24423:SF483 208 540 3.4E-81 T 23-04-2016 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 489 5.7E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 522 5.7E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 503 5.7E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 SMART SM00388 326 392 2.8E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 Pfam PF00512 His Kinase A (phospho-acceptor) domain 326 391 7.5E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 436 541 6.4E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 PANTHER PTHR24423 208 540 3.4E-81 T 23-04-2016 THIMO_RS10500 f98d1817462dd7d56a15731bfd9ddb92 542 SUPERFAMILY SSF55874 382 540 3.8E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 Pfam PF01476 LysM domain 429 473 4.3E-10 T 23-04-2016 IPR018392 LysM domain THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 PANTHER PTHR21666 149 350 3.1E-28 T 23-04-2016 THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 SUPERFAMILY SSF53955 161 274 3.83E-28 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 Gene3D G3DSA:3.10.350.10 428 472 9.1E-13 T 23-04-2016 IPR018392 LysM domain THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 Pfam PF01464 Transglycosylase SLT domain 175 268 2.1E-18 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 SMART SM00257 428 473 2.9E-9 T 23-04-2016 IPR018392 LysM domain THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 SUPERFAMILY SSF54106 427 472 1.83E-9 T 23-04-2016 IPR018392 LysM domain THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 Gene3D G3DSA:1.10.530.10 157 270 1.2E-30 T 23-04-2016 THIMO_RS02525 4d993b86b423fb0c2fe71510157bac7d 474 PANTHER PTHR21666:SF219 149 350 3.1E-28 T 23-04-2016 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 17 124 1.1E-40 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 PANTHER PTHR33823 15 128 2.4E-33 T 23-04-2016 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 97 121 - T 23-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 92 127 2.1E-12 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 14 133 24.448 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 SUPERFAMILY SSF57716 94 129 8.41E-9 T 23-04-2016 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 PANTHER PTHR33823:SF2 15 128 2.4E-33 T 23-04-2016 THIMO_RS12020 2ebae14fee41ef4850888e578416682f 136 SUPERFAMILY SSF109635 15 93 2.75E-23 T 23-04-2016 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 PANTHER PTHR30371 13 264 3.7E-108 T 23-04-2016 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 17 233 7.5E-72 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 ProSitePatterns PS01218 TatC family signature. 161 180 - T 23-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 PANTHER PTHR30371:SF0 13 264 3.7E-108 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 254 18.283 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 161 189 1.3E-49 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 110 136 1.3E-49 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 15 42 1.3E-49 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 92 110 1.3E-49 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS08860 b00e8cb8681a4afc83ff0f55c9417808 359 Pfam PF00902 Sec-independent protein translocase protein (TatC) 19 228 4.2E-65 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 THIMO_RS04705 e2e9d8eacaf97aead7a585e9b632c01d 496 Pfam PF13440 Polysaccharide biosynthesis protein 74 326 4.2E-20 T 23-04-2016 THIMO_RS04705 e2e9d8eacaf97aead7a585e9b632c01d 496 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 329 461 4.2E-7 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain THIMO_RS05335 5a492906186bd7f71ef922f3ff12a59f 305 Pfam PF01882 Protein of unknown function DUF58 44 128 5.2E-22 T 23-04-2016 IPR002881 Domain of unknown function DUF58 THIMO_RS05335 5a492906186bd7f71ef922f3ff12a59f 305 PANTHER PTHR33608 9 305 9.8E-63 T 23-04-2016 THIMO_RS05335 5a492906186bd7f71ef922f3ff12a59f 305 PANTHER PTHR33608:SF6 9 305 9.8E-63 T 23-04-2016 THIMO_RS05335 5a492906186bd7f71ef922f3ff12a59f 305 SUPERFAMILY SSF53300 80 209 6.23E-5 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 161 185 1.1E-17 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 325 344 1.1E-17 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 1.1E-17 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 1.1E-17 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 131 150 1.1E-17 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PANTHER PTHR22773:SF49 1 496 9.5E-143 T 23-04-2016 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 Pfam PF00361 Proton-conducting membrane transporter 126 419 2.5E-44 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS08545 c07ca7943a6548bfc309c9f848b3b719 508 PANTHER PTHR22773 1 496 9.5E-143 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 Gene3D G3DSA:3.40.190.10 45 167 1.6E-29 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 SMART SM00062 46 373 1.3E-24 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 SMART SM00079 46 364 4.6E-4 T 23-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 Gene3D G3DSA:3.40.190.10 250 336 2.2E-23 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 PANTHER PTHR18966 47 371 4.5E-53 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 PRINTS PR00169 Potassium channel signature 189 211 3.2E-6 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 PRINTS PR00169 Potassium channel signature 218 244 3.2E-6 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 Gene3D G3DSA:1.10.287.70 168 245 1.7E-20 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 371 2.0E-47 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 Pfam PF00060 Ligand-gated ion channel 162 263 4.0E-17 T 23-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 SUPERFAMILY SSF53850 11 153 2.48E-52 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 SUPERFAMILY SSF53850 257 371 2.48E-52 T 23-04-2016 THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 Pfam PF07885 Ion channel 167 245 6.7E-12 T 23-04-2016 IPR013099 Potassium channel domain THIMO_RS01825 b7855fe7d324e21b16133e3c729fae5b 374 SUPERFAMILY SSF81324 147 245 1.05E-23 T 23-04-2016 THIMO_RS14630 45fc4e83800c4333af177c184cb368b4 599 Pfam PF02706 Chain length determinant protein 7 137 1.2E-7 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 THIMO_RS14630 45fc4e83800c4333af177c184cb368b4 599 PANTHER PTHR32309 1 321 1.2E-30 T 23-04-2016 THIMO_RS14630 45fc4e83800c4333af177c184cb368b4 599 PANTHER PTHR32309 383 551 1.2E-30 T 23-04-2016 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 Pfam PF01926 50S ribosome-binding GTPase 161 284 4.7E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 Gene3D G3DSA:2.70.210.12 2 156 1.9E-58 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.14 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 Pfam PF01018 GTP1/OBG 3 156 2.5E-59 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 3.5E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.5E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 3.5E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.5E-32 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 Gene3D G3DSA:3.40.50.300 160 338 7.6E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 23-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PIRSF PIRSF002401 1 353 1.2E-131 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PANTHER PTHR11702:SF3 1 353 3.5E-165 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 PANTHER PTHR11702 1 353 3.5E-165 T 23-04-2016 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 SUPERFAMILY SSF82051 2 157 7.32E-56 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 5.0E-140 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 THIMO_RS06300 819c38bc25f2931d5318378a02b6118e 357 SUPERFAMILY SSF52540 151 336 1.05E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07360 aca4a3384c9f670916da6d3e4ffc21ff 364 PANTHER PTHR30085:SF3 62 364 4.8E-152 T 23-04-2016 THIMO_RS07360 aca4a3384c9f670916da6d3e4ffc21ff 364 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 154 250 1.6E-21 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 THIMO_RS07360 aca4a3384c9f670916da6d3e4ffc21ff 364 PANTHER PTHR30085 62 364 4.8E-152 T 23-04-2016 THIMO_RS07360 aca4a3384c9f670916da6d3e4ffc21ff 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 172 358 1.8E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07360 aca4a3384c9f670916da6d3e4ffc21ff 364 Gene3D G3DSA:1.10.3720.10 154 358 1.8E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07360 aca4a3384c9f670916da6d3e4ffc21ff 364 SUPERFAMILY SSF161098 152 344 9.29E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS14660 fe44743164eeb0743bae58a4fbe937d1 469 TIGRFAM TIGR03790 TIGR03790: TIGR03790 family protein 56 343 1.4E-69 T 23-04-2016 IPR022265 Conserved hypothetical protein CHP03790 THIMO_RS07575 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 Pfam PF05618 Putative ATP-dependant zinc protease 82 211 2.9E-32 T 23-04-2016 THIMO_RS07575 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 Gene3D G3DSA:2.40.70.10 82 207 8.5E-38 T 23-04-2016 IPR021109 Aspartic peptidase domain THIMO_RS07575 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 SUPERFAMILY SSF50630 82 212 3.56E-39 T 23-04-2016 IPR021109 Aspartic peptidase domain THIMO_RS07575 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 PANTHER PTHR38037 82 210 1.2E-31 T 23-04-2016 THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 Gene3D G3DSA:3.90.1150.10 330 491 3.8E-6 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 Gene3D G3DSA:3.40.640.10 75 249 2.2E-35 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 223 242 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 Pfam PF00266 Aminotransferase class-V 46 253 1.0E-19 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 PANTHER PTHR11601 304 394 9.4E-36 T 23-04-2016 THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 PANTHER PTHR11601 422 491 9.4E-36 T 23-04-2016 THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 PANTHER PTHR11601 13 282 9.4E-36 T 23-04-2016 THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 SUPERFAMILY SSF53383 309 491 4.59E-51 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS18430 d66555c3f003f764c5fa4c69a2d9d136 498 SUPERFAMILY SSF53383 26 252 4.59E-51 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 2.2E-43 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 2.2E-43 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 2.2E-43 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 2.2E-43 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 2.2E-43 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 314 4.5E-66 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 Gene3D G3DSA:3.30.360.10 160 316 1.7E-78 T 23-04-2016 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 SUPERFAMILY SSF51735 3 167 1.63E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 23-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 1.1E-133 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PANTHER PTHR10836 1 332 2.1E-214 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 151 7.4E-59 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 Gene3D G3DSA:3.40.50.720 2 159 1.9E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 SUPERFAMILY SSF55347 150 314 7.44E-72 T 23-04-2016 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 SMART SM00846 3 151 8.7E-96 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PANTHER PTHR10836:SF31 1 332 2.1E-214 T 23-04-2016 THIMO_RS10425 5c2f158a060904a4aebfb43db0da0bb4 332 PIRSF PIRSF000149 1 332 3.8E-131 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 SUPERFAMILY SSF160246 10 145 5.75E-35 T 23-04-2016 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 Gene3D G3DSA:3.30.450.90 164 294 2.2E-51 T 23-04-2016 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 PANTHER PTHR30258:SF1 1 571 1.3E-246 T 23-04-2016 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 389 403 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 13 570 5.2E-257 T 23-04-2016 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 Pfam PF00437 Type II/IV secretion system protein 194 461 4.3E-87 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 PANTHER PTHR30258 1 571 1.3E-246 T 23-04-2016 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 Gene3D G3DSA:3.40.50.300 300 570 7.1E-101 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 46 151 1.2E-18 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 THIMO_RS04990 0d39524e20afbf9d83f57a3bfaae0d7e 571 SUPERFAMILY SSF52540 180 569 2.65E-100 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01495 30571608b464d09aa3e68df399455da4 158 Gene3D G3DSA:1.20.120.330 43 101 2.6E-8 T 23-04-2016 THIMO_RS01495 30571608b464d09aa3e68df399455da4 158 Pfam PF05168 HEPN domain 43 104 2.0E-8 T 23-04-2016 IPR007842 HEPN domain THIMO_RS01495 30571608b464d09aa3e68df399455da4 158 SUPERFAMILY SSF81593 43 100 1.77E-6 T 23-04-2016 THIMO_RS01490 ebcd20b2e7f03709ac857e56f45aae78 80 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 7 33 5.5E-8 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 THIMO_RS01490 ebcd20b2e7f03709ac857e56f45aae78 80 SUPERFAMILY SSF89447 1 45 4.71E-10 T 23-04-2016 THIMO_RS01490 ebcd20b2e7f03709ac857e56f45aae78 80 SMART SM00966 4 49 4.9E-7 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 THIMO_RS01490 ebcd20b2e7f03709ac857e56f45aae78 80 Gene3D G3DSA:2.10.260.10 2 41 8.2E-10 T 23-04-2016 THIMO_RS01490 ebcd20b2e7f03709ac857e56f45aae78 80 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 10 43 1.5E-7 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 Gene3D G3DSA:3.40.50.300 191 391 4.2E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 SUPERFAMILY SSF54211 12 170 1.37E-29 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 406 498 2.3E-32 T 23-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 2.2E-42 T 23-04-2016 THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 PANTHER PTHR32039 1 502 6.8E-250 T 23-04-2016 THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 SMART SM00382 211 394 1.3E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 SUPERFAMILY SSF52540 191 502 1.01E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 Gene3D G3DSA:3.30.230.10 9 169 3.9E-25 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 PANTHER PTHR32039:SF7 1 502 6.8E-250 T 23-04-2016 IPR004482 Mg chelatase-related protein THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 397 6.9E-99 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 7 498 5.3E-194 T 23-04-2016 IPR004482 Mg chelatase-related protein THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 319 332 8.3E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 291 305 8.3E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 210 225 8.3E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 THIMO_RS00480 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 343 355 8.3E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 628 46.448 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Gene3D G3DSA:3.30.230.10 216 390 2.1E-46 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 SUPERFAMILY SSF54211 218 382 3.79E-45 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PANTHER PTHR10169 1 628 0.0 T 23-04-2016 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 7.5E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Gene3D G3DSA:3.40.50.670 398 610 3.2E-71 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF00204 DNA gyrase B 219 383 2.0E-38 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 4 625 3.6E-300 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 4.2E-106 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PANTHER PTHR10169:SF45 1 628 0.0 T 23-04-2016 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 SUPERFAMILY SSF55874 4 215 3.93E-67 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 SMART SM00433 34 624 6.6E-202 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF01751 Toprim domain 413 521 2.1E-12 T 23-04-2016 IPR006171 Toprim domain THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 109 123 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 497 514 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 414 428 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 517 529 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 562 578 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 266 279 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 31 46 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 66 79 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 479 495 4.0E-57 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 SMART SM00387 27 173 2.1E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 SUPERFAMILY SSF56719 388 621 4.71E-74 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 558 620 7.4E-23 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 THIMO_RS08525 ca063c9b4e4dd531097e566ce3a4de65 628 Gene3D G3DSA:3.30.565.10 5 215 9.3E-75 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 PIRSF PIRSF000388 1 269 6.2E-95 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 Gene3D G3DSA:3.20.20.60 8 267 7.4E-107 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 PANTHER PTHR20881:SF3 7 267 1.7E-134 T 23-04-2016 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 PANTHER PTHR20881 7 267 1.7E-134 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 SUPERFAMILY SSF51621 9 267 2.56E-98 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 10 267 2.2E-102 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 9 263 2.6E-106 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 THIMO_RS16705 c6d754ecfb42a73b166afbe4d91cf266 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 8 268 41.107 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 10 332 37.868 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 10 332 7.7E-106 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 Pfam PF06463 Molybdenum Cofactor Synthesis C 190 314 7.5E-37 T 23-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 PANTHER PTHR22960 5 282 6.5E-101 T 23-04-2016 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 Pfam PF13353 4Fe-4S single cluster domain 26 94 9.1E-5 T 23-04-2016 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 Gene3D G3DSA:3.20.20.70 10 323 6.2E-74 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 SUPERFAMILY SSF102114 10 296 1.57E-71 T 23-04-2016 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 Pfam PF04055 Radical SAM superfamily 24 183 7.3E-28 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 25 36 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 THIMO_RS01705 1edea19f7de963a12c84cc2aa818b9c7 332 SMART SM00729 19 222 2.9E-9 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 320 1.2E-23 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 Gene3D G3DSA:3.40.50.720 20 115 7.8E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 PANTHER PTHR10996 1 317 1.7E-95 T 23-04-2016 THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 SUPERFAMILY SSF52283 22 142 3.21E-25 T 23-04-2016 THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 PANTHER PTHR10996:SF91 1 317 1.7E-95 T 23-04-2016 THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 291 4.3E-52 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 Gene3D G3DSA:3.40.50.720 116 293 3.2E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01465 6005e92afe298737ece2661b6ad9eddc 322 SUPERFAMILY SSF51735 107 292 6.08E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS11315 1699b942d5f4912c4e7e1e36bb1faff1 106 PANTHER PTHR10657:SF12 22 106 1.9E-18 T 23-04-2016 THIMO_RS11315 1699b942d5f4912c4e7e1e36bb1faff1 106 SUPERFAMILY SSF52821 3 104 6.02E-29 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS11315 1699b942d5f4912c4e7e1e36bb1faff1 106 PANTHER PTHR10657 22 106 1.9E-18 T 23-04-2016 THIMO_RS11315 1699b942d5f4912c4e7e1e36bb1faff1 106 Gene3D G3DSA:3.40.250.10 2 105 2.1E-29 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS11315 1699b942d5f4912c4e7e1e36bb1faff1 106 Pfam PF00581 Rhodanese-like domain 8 97 2.5E-14 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS11315 1699b942d5f4912c4e7e1e36bb1faff1 106 SMART SM00450 6 101 2.8E-20 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 PANTHER PTHR30425 159 463 5.4E-97 T 23-04-2016 THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 SUPERFAMILY SSF161098 188 450 2.09E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 250 456 3.3E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 Gene3D G3DSA:1.10.3720.10 170 462 3.8E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 Pfam PF12501 Phosphate ATP-binding cassette transporter 7 181 8.8E-36 T 23-04-2016 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 PANTHER PTHR30425:SF3 159 463 5.4E-97 T 23-04-2016 THIMO_RS12095 e300d3efff2b80002c4bdf81d4ca5d7f 463 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 169 458 1.4E-85 T 23-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 THIMO_RS05705 2673047ba9ec1a64c83be68d14fa3142 175 PANTHER PTHR37528 1 170 4.4E-23 T 23-04-2016 THIMO_RS05705 2673047ba9ec1a64c83be68d14fa3142 175 SUPERFAMILY SSF101327 10 170 2.62E-35 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 THIMO_RS05705 2673047ba9ec1a64c83be68d14fa3142 175 Pfam PF03695 Uncharacterised protein family (UPF0149) 15 171 9.8E-33 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 SUPERFAMILY SSF51905 252 363 3.37E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 SUPERFAMILY SSF51905 4 165 3.37E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 4 301 3.1E-75 T 23-04-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 266 281 8.4E-15 T 23-04-2016 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.4E-15 T 23-04-2016 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 8.4E-15 T 23-04-2016 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 Pfam PF01494 FAD binding domain 81 291 1.5E-8 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 Gene3D G3DSA:3.50.50.60 3 156 1.0E-15 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 38 7.2E-6 T 23-04-2016 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 PANTHER PTHR10617 2 390 4.3E-62 T 23-04-2016 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 Gene3D G3DSA:3.30.9.10 157 312 1.1E-43 T 23-04-2016 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 TIGRFAM TIGR02023 BchP-ChlP: geranylgeranyl reductase 4 390 1.6E-156 T 23-04-2016 IPR010253 Geranylgeranyl reductase, plant/prokaryotic GO:0015979|GO:0015995|GO:0045550|GO:0055114 KEGG: 00900+1.3.1.83|UniPathway: UPA00668 THIMO_RS04390 9f09f02473e5467215235364fb7fde2c 395 PANTHER PTHR10617:SF101 2 390 4.3E-62 T 23-04-2016 THIMO_RS08980 ad9ec1952edf2b9327cd309ff23f620c 228 Pfam PF02224 Cytidylate kinase 5 214 2.5E-73 T 23-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 THIMO_RS08980 ad9ec1952edf2b9327cd309ff23f620c 228 SUPERFAMILY SSF52540 3 217 2.82E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08980 ad9ec1952edf2b9327cd309ff23f620c 228 Gene3D G3DSA:3.40.50.300 3 215 7.3E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08980 ad9ec1952edf2b9327cd309ff23f620c 228 TIGRFAM TIGR00017 cmk: cytidylate kinase 3 213 3.6E-75 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 THIMO_RS08980 ad9ec1952edf2b9327cd309ff23f620c 228 PANTHER PTHR21299 2 226 1.1E-71 T 23-04-2016 THIMO_RS08980 ad9ec1952edf2b9327cd309ff23f620c 228 Hamap MF_00238 Cytidylate kinase [cmk]. 3 218 32.713 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 THIMO_RS12930 76b4c20f010f1181771bec558229d42b 315 Pfam PF13354 Beta-lactamase enzyme family 127 264 1.0E-15 T 23-04-2016 THIMO_RS12930 76b4c20f010f1181771bec558229d42b 315 SUPERFAMILY SSF56601 70 306 1.44E-26 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS12930 76b4c20f010f1181771bec558229d42b 315 Gene3D G3DSA:3.40.710.10 76 310 1.7E-26 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS02090 1431fd781ebb77da89082e6d32eb459b 268 SUPERFAMILY SSF55486 45 250 4.61E-45 T 23-04-2016 THIMO_RS02090 1431fd781ebb77da89082e6d32eb459b 268 Pfam PF06167 Glucose-regulated metallo-peptidase M90 6 248 7.0E-91 T 23-04-2016 IPR010384 MtfA family THIMO_RS02090 1431fd781ebb77da89082e6d32eb459b 268 PANTHER PTHR30164 6 268 1.9E-88 T 23-04-2016 THIMO_RS02090 1431fd781ebb77da89082e6d32eb459b 268 Gene3D G3DSA:3.40.390.10 40 249 1.8E-31 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 Pfam PF00912 Transglycosylase 71 237 8.7E-45 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 49 584 1.0E-192 T 23-04-2016 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 ProSitePatterns PS00036 Basic-leucine zipper (bZIP) domain signature. 218 233 - T 23-04-2016 IPR004827 Basic-leucine zipper domain GO:0003700|GO:0006355|GO:0043565 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 608 695 2.4E-18 T 23-04-2016 IPR009647 Penicillin-binding, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 PANTHER PTHR32282:SF0 48 575 4.9E-148 T 23-04-2016 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 Gene3D G3DSA:1.10.3810.10 71 241 4.7E-48 T 23-04-2016 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 Gene3D G3DSA:3.40.710.10 242 590 1.8E-63 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 PANTHER PTHR32282 48 575 4.9E-148 T 23-04-2016 THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 SUPERFAMILY SSF56601 269 587 4.1E-84 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 SUPERFAMILY SSF56601 220 242 4.1E-84 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 SUPERFAMILY SSF53955 50 270 5.62E-61 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS15080 748ec82adcb6f81c4ea441f1e6c2d243 699 Pfam PF00905 Penicillin binding protein transpeptidase domain 316 537 1.0E-14 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 THIMO_RS01580 5c2aae40348dc966e7afa2ff404e0e3a 279 PANTHER PTHR19446 36 268 1.6E-46 T 23-04-2016 THIMO_RS01580 5c2aae40348dc966e7afa2ff404e0e3a 279 PANTHER PTHR19446:SF383 36 268 1.6E-46 T 23-04-2016 THIMO_RS01580 5c2aae40348dc966e7afa2ff404e0e3a 279 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 68 272 3.0E-36 T 23-04-2016 IPR000477 Reverse transcriptase domain THIMO_RS01580 5c2aae40348dc966e7afa2ff404e0e3a 279 SUPERFAMILY SSF56672 11 271 1.27E-35 T 23-04-2016 THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 PANTHER PTHR23133 5 181 2.0E-57 T 23-04-2016 THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 Pfam PF13242 HAD-hyrolase-like 102 174 5.8E-14 T 23-04-2016 THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 PANTHER PTHR23133:SF7 5 181 2.0E-57 T 23-04-2016 THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 146 3.9E-42 T 23-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 147 1.8E-28 T 23-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 Gene3D G3DSA:3.40.50.1000 2 179 2.2E-56 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 PIRSF PIRSF004682 1 183 3.2E-55 T 23-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 THIMO_RS17515 a3bdbd8aa488a850b77475e20b7018da 184 SUPERFAMILY SSF56784 2 179 1.04E-46 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS10340 5d8359dada5f6e161ece797a55656102 372 SUPERFAMILY SSF161098 140 354 4.58E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS10340 5d8359dada5f6e161ece797a55656102 372 PANTHER PTHR30465 8 367 3.9E-116 T 23-04-2016 THIMO_RS10340 5d8359dada5f6e161ece797a55656102 372 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 194 366 7.5E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS10340 5d8359dada5f6e161ece797a55656102 372 PANTHER PTHR30465:SF45 8 367 3.9E-116 T 23-04-2016 THIMO_RS10340 5d8359dada5f6e161ece797a55656102 372 Gene3D G3DSA:1.10.3720.10 141 362 3.4E-9 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 PANTHER PTHR14413 1 129 3.7E-67 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 Gene3D G3DSA:3.90.1030.10 1 117 8.1E-51 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 9.1E-47 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 SUPERFAMILY SSF64263 1 119 1.15E-50 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 Pfam PF01196 Ribosomal protein L17 20 116 1.1E-34 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13500 eb46ad961cb23afcc85fe7be0b67a7ce 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.599 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 7.0E-20 T 23-04-2016 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.1E-40 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.1E-40 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.1E-40 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 SUPERFAMILY SSF74731 2 117 4.58E-49 T 23-04-2016 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 PANTHER PTHR10986 2 117 4.3E-65 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 PANTHER PTHR10986:SF12 2 117 4.3E-65 T 23-04-2016 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 Gene3D G3DSA:1.10.1900.20 55 118 5.5E-29 T 23-04-2016 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.017 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 4.9E-50 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS13460 4b0ee1c20b73a99416428d498a8a6845 120 Pfam PF00453 Ribosomal protein L20 3 109 1.0E-48 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 508 708 1.3E-44 T 23-04-2016 IPR005702 Exopolysaccharide synthesis protein GO:0045226 THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 Gene3D G3DSA:3.40.50.300 524 705 1.4E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 PANTHER PTHR32309:SF13 3 721 5.7E-163 T 23-04-2016 THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 Pfam PF13807 G-rich domain on putative tyrosine kinase 381 451 8.0E-16 T 23-04-2016 IPR032807 Tyrosine kinase, G-rich domain THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 Pfam PF02706 Chain length determinant protein 5 186 2.3E-20 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 PANTHER PTHR32309 3 721 5.7E-163 T 23-04-2016 THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 534 700 1.4E-7 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS12730 3ce3284f946e379a5b7ca27fadb401e0 734 SUPERFAMILY SSF52540 526 716 7.43E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS13350 f58b3f66489a9a92d49e588712438fd7 329 Gene3D G3DSA:3.40.50.1980 66 188 1.5E-13 T 23-04-2016 THIMO_RS13350 f58b3f66489a9a92d49e588712438fd7 329 Gene3D G3DSA:3.40.50.1980 191 323 1.2E-27 T 23-04-2016 THIMO_RS13350 f58b3f66489a9a92d49e588712438fd7 329 PANTHER PTHR30535 49 321 3.1E-43 T 23-04-2016 THIMO_RS13350 f58b3f66489a9a92d49e588712438fd7 329 SUPERFAMILY SSF53807 55 326 2.83E-46 T 23-04-2016 THIMO_RS13350 f58b3f66489a9a92d49e588712438fd7 329 Pfam PF01497 Periplasmic binding protein 70 296 1.0E-20 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 Pfam PF00361 Proton-conducting membrane transporter 133 429 5.2E-74 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 74 123 2.0E-6 T 23-04-2016 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 168 192 5.0E-38 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 5.0E-38 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 138 157 5.0E-38 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 237 261 5.0E-38 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 PANTHER PTHR22773 1 499 1.7E-203 T 23-04-2016 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 PANTHER PTHR22773:SF40 1 499 1.7E-203 T 23-04-2016 THIMO_RS02850 7aa26fe444c89fee849d7d83a466f824 504 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 498 1.4E-186 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 THIMO_RS13115 235908eea835139639682189b49645e8 104 Pfam PF13466 STAS domain 15 93 6.1E-17 T 23-04-2016 IPR002645 STAS domain THIMO_RS13115 235908eea835139639682189b49645e8 104 Gene3D G3DSA:3.30.750.24 14 97 1.9E-12 T 23-04-2016 IPR002645 STAS domain THIMO_RS13115 235908eea835139639682189b49645e8 104 SUPERFAMILY SSF52091 14 97 1.12E-14 T 23-04-2016 IPR002645 STAS domain THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 SUPERFAMILY SSF109604 319 500 4.93E-52 T 23-04-2016 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 Gene3D G3DSA:3.30.420.150 142 317 1.2E-47 T 23-04-2016 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 Pfam PF02541 Ppx/GppA phosphatase family 31 313 1.0E-67 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 SUPERFAMILY SSF53067 18 138 2.78E-33 T 23-04-2016 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 PANTHER PTHR30005 15 506 4.8E-167 T 23-04-2016 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 Gene3D G3DSA:3.30.420.40 13 137 8.2E-40 T 23-04-2016 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 PANTHER PTHR30005:SF4 15 506 4.8E-167 T 23-04-2016 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 PIRSF PIRSF001267 9 507 2.2E-185 T 23-04-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 THIMO_RS03275 3900132b5931ed0cd6ded329c7e8ddf2 507 SUPERFAMILY SSF53067 145 316 2.33E-43 T 23-04-2016 THIMO_RS01565 0f468b34bf6f66d7b792c47f76fc40d6 94 Gene3D G3DSA:3.30.70.240 6 70 1.5E-13 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS01565 0f468b34bf6f66d7b792c47f76fc40d6 94 PANTHER PTHR34405 3 94 3.3E-12 T 23-04-2016 THIMO_RS01565 0f468b34bf6f66d7b792c47f76fc40d6 94 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 4 92 10.763 T 23-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 THIMO_RS01565 0f468b34bf6f66d7b792c47f76fc40d6 94 Pfam PF09827 CRISPR associated protein Cas2 7 66 1.8E-9 T 23-04-2016 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 THIMO_RS01565 0f468b34bf6f66d7b792c47f76fc40d6 94 SUPERFAMILY SSF143430 7 72 3.79E-16 T 23-04-2016 THIMO_RS06995 230f01f90551d4d4d30904736eab94ed 179 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 34.988 T 23-04-2016 IPR022927 RNA pyrophosphohydrolase RppH THIMO_RS06995 230f01f90551d4d4d30904736eab94ed 179 Pfam PF00293 NUDIX domain 7 145 1.2E-19 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS06995 230f01f90551d4d4d30904736eab94ed 179 Gene3D G3DSA:3.90.79.10 7 151 1.7E-25 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS06995 230f01f90551d4d4d30904736eab94ed 179 PANTHER PTHR23114 1 160 1.6E-30 T 23-04-2016 THIMO_RS06995 230f01f90551d4d4d30904736eab94ed 179 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 THIMO_RS06995 230f01f90551d4d4d30904736eab94ed 179 SUPERFAMILY SSF55811 4 151 3.66E-25 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 Pfam PF00374 Nickel-dependent hydrogenase 43 112 2.0E-13 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 283 2.3E-45 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 284 360 4.1E-16 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 SUPERFAMILY SSF56762 15 360 1.05E-108 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 PANTHER PTHR11993 3 360 4.9E-125 T 23-04-2016 THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 Gene3D G3DSA:1.10.645.10 229 359 1.5E-29 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 Gene3D G3DSA:1.10.645.10 4 228 1.2E-52 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 43 68 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS15975 193764eb3771f76d66f20c831f27cfda 360 PANTHER PTHR11993:SF29 3 360 4.9E-125 T 23-04-2016 THIMO_RS05310 179bb3345c968f55c219f7203302388a 605 PANTHER PTHR40940 133 563 2.3E-13 T 23-04-2016 THIMO_RS05310 179bb3345c968f55c219f7203302388a 605 PANTHER PTHR40940:SF1 133 563 2.3E-13 T 23-04-2016 THIMO_RS05310 179bb3345c968f55c219f7203302388a 605 Pfam PF13584 Oxygen tolerance 136 384 6.6E-38 T 23-04-2016 IPR025738 Aerotolerance-related protein BatD THIMO_RS01385 5ce2f8a034325a7e29db03edbdcee74b 437 Pfam PF05036 Sporulation related domain 362 425 4.4E-6 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS01385 5ce2f8a034325a7e29db03edbdcee74b 437 Gene3D G3DSA:3.30.70.1070 361 434 1.5E-6 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS01385 5ce2f8a034325a7e29db03edbdcee74b 437 SUPERFAMILY SSF110997 362 434 7.85E-6 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 SUPERFAMILY SSF53383 6 426 4.9E-131 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 427 49.596 T 23-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 PANTHER PTHR11986 3 431 1.3E-199 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 16 424 6.6E-178 T 23-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 PANTHER PTHR11986:SF8 3 431 1.3E-199 T 23-04-2016 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 Gene3D G3DSA:3.40.640.10 64 330 1.2E-90 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 Pfam PF00202 Aminotransferase class-III 27 421 7.4E-126 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 Gene3D G3DSA:3.90.1150.10 335 426 1.1E-56 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS16345 674cd9bc3267f108b96c3d5e33363726 431 Gene3D G3DSA:3.90.1150.10 6 63 1.1E-56 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 Gene3D G3DSA:3.40.190.10 102 205 8.0E-36 T 23-04-2016 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 PANTHER PTHR30632 1 244 1.2E-40 T 23-04-2016 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 SUPERFAMILY SSF53850 24 243 7.44E-61 T 23-04-2016 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 PIRSF PIRSF004846 2 246 3.3E-54 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 30 242 2.0E-77 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 Gene3D G3DSA:3.40.190.10 24 90 9.2E-9 T 23-04-2016 THIMO_RS02940 919f31a81fe2316e1f3361108ec1992f 246 Pfam PF13531 Bacterial extracellular solute-binding protein 26 243 1.6E-43 T 23-04-2016 THIMO_RS11190 bc3d9ab8beca27509eac0162b4825e85 113 SUPERFAMILY SSF69721 17 105 4.45E-19 T 23-04-2016 IPR025526 DsrC-like domain THIMO_RS11190 bc3d9ab8beca27509eac0162b4825e85 113 Pfam PF04358 DsrC like protein 18 104 5.5E-14 T 23-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE THIMO_RS11190 bc3d9ab8beca27509eac0162b4825e85 113 Gene3D G3DSA:1.10.10.370 47 105 2.4E-9 T 23-04-2016 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 279 294 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 217 230 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 406 415 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 SMART SM00065 20 167 0.008 T 23-04-2016 IPR003018 GAF domain GO:0005515 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:3.40.50.300 191 365 1.1E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 Pfam PF00158 Sigma-54 interaction domain 193 359 9.4E-67 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:1.10.8.60 366 417 6.3E-21 T 23-04-2016 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:3.30.450.40 21 165 4.9E-7 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 PANTHER PTHR32071 141 527 8.9E-142 T 23-04-2016 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 SUPERFAMILY SSF55781 5 166 9.16E-9 T 23-04-2016 IPR029016 GAF domain-like THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 SMART SM00382 213 355 9.7E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 SUPERFAMILY SSF52540 192 428 1.5E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 SUPERFAMILY SSF46689 406 518 4.93E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01805 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:1.10.10.60 418 518 9.0E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS01975 04281d6780c1b6c9ad09b9896ee5409b 230 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 13 212 2.5E-60 T 23-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 THIMO_RS01975 04281d6780c1b6c9ad09b9896ee5409b 230 Gene3D G3DSA:3.40.50.1360 6 222 9.1E-61 T 23-04-2016 THIMO_RS01975 04281d6780c1b6c9ad09b9896ee5409b 230 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 13 223 2.2E-53 T 23-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 THIMO_RS01975 04281d6780c1b6c9ad09b9896ee5409b 230 SUPERFAMILY SSF100950 7 222 1.17E-55 T 23-04-2016 THIMO_RS01975 04281d6780c1b6c9ad09b9896ee5409b 230 PANTHER PTHR11054 5 225 2.8E-51 T 23-04-2016 THIMO_RS07625 e7a6863c8ffa8b97acf00095a3f4e1e3 140 Pfam PF03061 Thioesterase superfamily 31 103 1.1E-15 T 23-04-2016 IPR006683 Thioesterase domain THIMO_RS07625 e7a6863c8ffa8b97acf00095a3f4e1e3 140 SUPERFAMILY SSF54637 16 133 2.73E-35 T 23-04-2016 IPR029069 HotDog domain THIMO_RS07625 e7a6863c8ffa8b97acf00095a3f4e1e3 140 PANTHER PTHR11049:SF5 4 132 1.8E-46 T 23-04-2016 THIMO_RS07625 e7a6863c8ffa8b97acf00095a3f4e1e3 140 PANTHER PTHR11049 4 132 1.8E-46 T 23-04-2016 THIMO_RS07625 e7a6863c8ffa8b97acf00095a3f4e1e3 140 Gene3D G3DSA:3.10.129.10 13 133 1.4E-37 T 23-04-2016 IPR029069 HotDog domain THIMO_RS00085 6ddacf78fc14fa3025b0fc6ceb4ad721 244 Pfam PF08241 Methyltransferase domain 43 134 2.6E-11 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS00085 6ddacf78fc14fa3025b0fc6ceb4ad721 244 Gene3D G3DSA:3.40.50.150 21 199 3.5E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00085 6ddacf78fc14fa3025b0fc6ceb4ad721 244 SUPERFAMILY SSF53335 20 200 4.03E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS12755 eb2ebb2c263a389c95a21f263fb03526 86 Gene3D G3DSA:3.30.420.10 7 73 2.9E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12755 eb2ebb2c263a389c95a21f263fb03526 86 PANTHER PTHR32552 8 85 6.7E-13 T 23-04-2016 THIMO_RS12755 eb2ebb2c263a389c95a21f263fb03526 86 Pfam PF13683 Integrase core domain 10 73 3.8E-12 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS12755 eb2ebb2c263a389c95a21f263fb03526 86 SUPERFAMILY SSF53098 8 75 3.79E-13 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Gene3D G3DSA:3.20.20.70 7 247 6.5E-78 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 PIRSF PIRSF006621 1 328 1.1E-95 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 317 1.8E-110 T 23-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 322 44.685 T 23-04-2016 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Gene3D G3DSA:1.10.1200.80 253 319 1.1E-14 T 23-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 PANTHER PTHR11082:SF25 1 319 1.6E-123 T 23-04-2016 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 PANTHER PTHR11082 1 319 1.6E-123 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Pfam PF01207 Dihydrouridine synthase (Dus) 13 314 1.0E-91 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 THIMO_RS00895 c6f4334f1bb2ddb2c70cb57b0440ca31 329 SUPERFAMILY SSF51395 10 315 6.04E-81 T 23-04-2016 THIMO_RS16320 134f47acaa16b12d5b7ffe511b6c5cf6 277 SUPERFAMILY SSF161098 5 277 3.4E-70 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS16320 134f47acaa16b12d5b7ffe511b6c5cf6 277 Gene3D G3DSA:1.10.3720.10 7 264 1.3E-61 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS16320 134f47acaa16b12d5b7ffe511b6c5cf6 277 PANTHER PTHR32243:SF18 1 277 2.1E-101 T 23-04-2016 THIMO_RS16320 134f47acaa16b12d5b7ffe511b6c5cf6 277 PANTHER PTHR32243 1 277 2.1E-101 T 23-04-2016 THIMO_RS16320 134f47acaa16b12d5b7ffe511b6c5cf6 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 269 1.2E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 207 2.7E-29 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 159 183 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 256 282 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 188 211 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 232 250 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 116 139 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 284 297 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 214 231 4.5E-121 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 44 3.8E-6 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PIRSF PIRSF000310 5 357 3.7E-142 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PANTHER PTHR30013 1 366 9.5E-263 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 PANTHER PTHR30013:SF6 1 366 9.5E-263 T 23-04-2016 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 227 308 9.6E-33 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 5 356 4.5E-162 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 Gene3D G3DSA:3.40.50.700 50 226 2.9E-56 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 SUPERFAMILY SSF56770 50 310 2.02E-87 T 23-04-2016 THIMO_RS15385 bb07f8b6fbc556a182814ab8e6605527 366 Gene3D G3DSA:4.10.480.10 227 310 3.5E-39 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal THIMO_RS10270 1f71c765614b6942035312e9ed23a547 139 PANTHER PTHR34290:SF2 21 138 3.2E-15 T 23-04-2016 THIMO_RS10270 1f71c765614b6942035312e9ed23a547 139 PANTHER PTHR34290 21 138 3.2E-15 T 23-04-2016 THIMO_RS10270 1f71c765614b6942035312e9ed23a547 139 Pfam PF04134 Protein of unknown function, DUF393 23 128 7.5E-24 T 23-04-2016 IPR007263 Protein of unknown function DUF393 THIMO_RS10270 1f71c765614b6942035312e9ed23a547 139 SUPERFAMILY SSF52833 21 85 5.06E-5 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS06700 01712c9992159026c878703c271969d4 349 Pfam PF01699 Sodium/calcium exchanger protein 195 341 5.4E-12 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 THIMO_RS06700 01712c9992159026c878703c271969d4 349 Pfam PF01699 Sodium/calcium exchanger protein 13 154 9.5E-10 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 156 1.2E-38 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 PANTHER PTHR10458 1 166 1.9E-47 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 Hamap MF_00163 Peptide deformylase [def]. 2 167 25.902 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 Pfam PF01327 Polypeptide deformylase 5 155 9.1E-41 T 23-04-2016 IPR023635 Peptide deformylase THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 PIRSF PIRSF004749 1 175 1.4E-47 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 SUPERFAMILY SSF56420 3 166 1.1E-48 T 23-04-2016 IPR023635 Peptide deformylase THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 125 154 1.3E-24 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 94 105 1.3E-24 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 106 124 1.3E-24 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 34 63 1.3E-24 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 THIMO_RS10465 8db175126e58a31c2ee8eaec52be5818 177 Gene3D G3DSA:3.90.45.10 6 166 7.2E-49 T 23-04-2016 IPR023635 Peptide deformylase THIMO_RS10305 2be9d5fd38ee64a36faebd0a5f99c861 103 SUPERFAMILY SSF82693 54 93 1.26E-8 T 23-04-2016 THIMO_RS10305 2be9d5fd38ee64a36faebd0a5f99c861 103 PANTHER PTHR32063:SF16 15 93 4.1E-28 T 23-04-2016 THIMO_RS10305 2be9d5fd38ee64a36faebd0a5f99c861 103 Gene3D G3DSA:3.30.70.1430 54 93 1.7E-8 T 23-04-2016 THIMO_RS10305 2be9d5fd38ee64a36faebd0a5f99c861 103 Pfam PF00873 AcrB/AcrD/AcrF family 21 93 1.1E-12 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10305 2be9d5fd38ee64a36faebd0a5f99c861 103 PANTHER PTHR32063 15 93 4.1E-28 T 23-04-2016 THIMO_RS14125 34e097b3fa8ff950ac28729ff932f9c5 221 SUPERFAMILY SSF52833 34 211 4.59E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS14125 34e097b3fa8ff950ac28729ff932f9c5 221 PANTHER PTHR35891:SF2 6 219 9.9E-49 T 23-04-2016 THIMO_RS14125 34e097b3fa8ff950ac28729ff932f9c5 221 PANTHER PTHR35891 6 219 9.9E-49 T 23-04-2016 THIMO_RS14125 34e097b3fa8ff950ac28729ff932f9c5 221 Pfam PF01323 DSBA-like thioredoxin domain 55 194 4.8E-15 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 THIMO_RS14125 34e097b3fa8ff950ac28729ff932f9c5 221 PIRSF PIRSF001488 9 217 5.3E-43 T 23-04-2016 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL THIMO_RS14125 34e097b3fa8ff950ac28729ff932f9c5 221 Gene3D G3DSA:3.40.30.10 34 216 6.4E-51 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 PIRSF PIRSF002134 1 118 1.8E-39 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 SUPERFAMILY SSF46946 2 114 7.07E-44 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 4.4E-31 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 Gene3D G3DSA:4.10.910.10 72 117 2.0E-24 T 23-04-2016 IPR027437 30s ribosomal protein S13, C-terminal THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 23-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 Gene3D G3DSA:1.10.8.50 1 71 3.3E-28 T 23-04-2016 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 9.5E-51 T 23-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.752 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13520 d94c803f6082cde54c392d29940fe58b 118 PANTHER PTHR10871 1 118 3.7E-60 T 23-04-2016 THIMO_RS02095 d2e2ecb28985a7217e111fa802dc48e7 206 Pfam PF02630 SCO1/SenC 44 182 4.5E-37 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC THIMO_RS02095 d2e2ecb28985a7217e111fa802dc48e7 206 SUPERFAMILY SSF52833 43 202 5.47E-49 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS02095 d2e2ecb28985a7217e111fa802dc48e7 206 Gene3D G3DSA:3.40.30.10 12 201 1.7E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS02095 d2e2ecb28985a7217e111fa802dc48e7 206 PANTHER PTHR12151 1 201 4.7E-50 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC THIMO_RS10055 0bdeb3988199de8d570c0f41c6b9f797 182 SUPERFAMILY SSF48452 77 175 1.58E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS10055 0bdeb3988199de8d570c0f41c6b9f797 182 Pfam PF14559 Tetratricopeptide repeat 94 137 8.3E-6 T 23-04-2016 THIMO_RS10055 0bdeb3988199de8d570c0f41c6b9f797 182 Gene3D G3DSA:1.25.40.10 75 174 3.0E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06660 298dc296213856625842de16a35605c5 238 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 234 8.8E-106 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 THIMO_RS06660 298dc296213856625842de16a35605c5 238 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 126 1.6E-28 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS06660 298dc296213856625842de16a35605c5 238 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 141 210 6.4E-5 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS06660 298dc296213856625842de16a35605c5 238 SUPERFAMILY SSF53254 1 229 4.53E-71 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS06660 298dc296213856625842de16a35605c5 238 PANTHER PTHR11931 2 237 3.6E-136 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 THIMO_RS06660 298dc296213856625842de16a35605c5 238 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 229 43.824 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 THIMO_RS06660 298dc296213856625842de16a35605c5 238 Gene3D G3DSA:3.40.50.1240 2 230 1.8E-89 T 23-04-2016 IPR029033 Histidine phosphatase superfamily THIMO_RS06660 298dc296213856625842de16a35605c5 238 SMART SM00855 4 190 2.4E-23 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 30.929 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 Gene3D G3DSA:3.40.50.150 122 286 1.7E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 PANTHER PTHR18895:SF69 11 285 1.2E-93 T 23-04-2016 THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 SUPERFAMILY SSF53335 70 271 4.96E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 285 3.5E-76 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 PIRSF PIRSF000401 1 293 4.2E-80 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 PANTHER PTHR18895 11 285 1.2E-93 T 23-04-2016 THIMO_RS00890 306c436e818e7bae30107f0d1e214577 299 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 289 4.0E-84 T 23-04-2016 THIMO_RS17030 9304416cbd38da5c143a5550cf305aee 402 SMART SM00729 43 248 0.0053 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS17030 9304416cbd38da5c143a5550cf305aee 402 PANTHER PTHR11228 35 395 8.3E-20 T 23-04-2016 THIMO_RS17030 9304416cbd38da5c143a5550cf305aee 402 SUPERFAMILY SSF102114 40 361 5.23E-39 T 23-04-2016 THIMO_RS17030 9304416cbd38da5c143a5550cf305aee 402 Pfam PF04055 Radical SAM superfamily 48 203 3.3E-17 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS17030 9304416cbd38da5c143a5550cf305aee 402 Gene3D G3DSA:3.20.20.70 40 365 4.3E-38 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 SUPERFAMILY SSF50249 1 66 2.18E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 PRINTS PR00050 Cold shock protein signature 25 34 2.2E-18 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 PRINTS PR00050 Cold shock protein signature 4 19 2.2E-18 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 PRINTS PR00050 Cold shock protein signature 40 58 2.2E-18 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 Gene3D G3DSA:2.40.50.140 1 65 2.4E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 4.4E-35 T 23-04-2016 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 PIRSF PIRSF002599 1 68 1.2E-24 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.2E-30 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 PANTHER PTHR11544 1 67 2.4E-36 T 23-04-2016 THIMO_RS10025 2c355d88b709af1564002a5a36440445 68 SMART SM00357 3 67 2.5E-29 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 THIMO_RS04675 b10c159cd75d9a97453e9f3a0f22e82f 246 Pfam PF02563 Polysaccharide biosynthesis/export protein 62 134 3.4E-23 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 THIMO_RS04675 b10c159cd75d9a97453e9f3a0f22e82f 246 Gene3D G3DSA:3.10.560.10 130 193 2.2E-17 T 23-04-2016 THIMO_RS04675 b10c159cd75d9a97453e9f3a0f22e82f 246 PANTHER PTHR33619 64 221 1.9E-39 T 23-04-2016 THIMO_RS04675 b10c159cd75d9a97453e9f3a0f22e82f 246 Pfam PF10531 SLBB domain 142 186 6.4E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS04675 b10c159cd75d9a97453e9f3a0f22e82f 246 Gene3D G3DSA:3.30.1950.10 68 129 1.1E-20 T 23-04-2016 THIMO_RS02255 f3e7fc81b82eee4074672c17db7685d3 281 Gene3D G3DSA:3.30.420.10 112 267 2.9E-33 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS02255 f3e7fc81b82eee4074672c17db7685d3 281 SUPERFAMILY SSF53098 116 277 3.92E-49 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS02255 f3e7fc81b82eee4074672c17db7685d3 281 Pfam PF00665 Integrase core domain 118 229 6.7E-23 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS02255 f3e7fc81b82eee4074672c17db7685d3 281 PANTHER PTHR32552 20 270 4.1E-29 T 23-04-2016 THIMO_RS02255 f3e7fc81b82eee4074672c17db7685d3 281 Pfam PF13276 HTH-like domain 40 96 6.3E-15 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 191 1.0E-70 T 23-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 Pfam PF00355 Rieske [2Fe-2S] domain 113 176 1.3E-10 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 PANTHER PTHR10134:SF8 4 195 1.3E-85 T 23-04-2016 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 SUPERFAMILY SSF50022 31 190 2.42E-40 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 2 40 2.3E-12 T 23-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 PANTHER PTHR10134 4 195 1.3E-85 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 Gene3D G3DSA:2.102.10.10 9 195 4.6E-42 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 163 175 1.2E-7 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 1.2E-7 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 THIMO_RS07870 e2b057147a65629320d2bbe69e213651 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 150 162 1.2E-7 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 SMART SM00228 341 409 0.002 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 38 159 2.3E-22 T 23-04-2016 IPR007621 TPM domain THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 PANTHER PTHR30373 1 164 2.7E-13 T 23-04-2016 THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 PANTHER PTHR30373:SF2 1 164 2.7E-13 T 23-04-2016 THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 Gene3D G3DSA:2.30.42.10 352 414 1.3E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 SUPERFAMILY SSF50156 349 416 3.02E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS13040 3a52c44ed62a758d97c07ee00d163353 421 Pfam PF13180 PDZ domain 350 414 1.6E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 PANTHER PTHR10953 18 169 6.4E-78 T 23-04-2016 THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 PANTHER PTHR10953 196 240 6.4E-78 T 23-04-2016 THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 Gene3D G3DSA:3.40.50.720 17 194 3.5E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 Gene3D G3DSA:3.40.50.720 226 248 3.5E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 Pfam PF00899 ThiF family 19 247 2.6E-38 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 PANTHER PTHR10953:SF145 18 169 6.4E-78 T 23-04-2016 THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 PANTHER PTHR10953:SF145 196 240 6.4E-78 T 23-04-2016 THIMO_RS09370 1513c9ba9161843550c736963e43b725 251 SUPERFAMILY SSF69572 18 248 1.96E-56 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 THIMO_RS15935 6c143a6bbe866c76ef4435891f104a9a 350 Gene3D G3DSA:3.40.50.410 6 160 6.6E-15 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS15935 6c143a6bbe866c76ef4435891f104a9a 350 SMART SM00327 3 177 3.8E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS15935 6c143a6bbe866c76ef4435891f104a9a 350 Pfam PF00092 von Willebrand factor type A domain 6 158 1.6E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS15935 6c143a6bbe866c76ef4435891f104a9a 350 SUPERFAMILY SSF53300 5 180 2.37E-23 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS15935 6c143a6bbe866c76ef4435891f104a9a 350 Pfam PF15616 TerY-C metal binding domain 219 350 1.1E-53 T 23-04-2016 IPR028274 TerY-C metal binding domain THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF51621 5 79 8.72E-89 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF51621 169 339 8.72E-89 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF50800 74 168 6.11E-24 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:3.40.1380.20 327 436 2.3E-17 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:3.20.20.60 170 326 1.6E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:3.20.20.60 7 76 1.6E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 337 5.2E-114 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 365 439 2.5E-12 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 449 4.8E-144 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:2.40.33.10 77 168 3.4E-28 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 270 294 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 188 202 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 218 244 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 314 330 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 245 269 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 295 313 2.6E-63 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 PANTHER PTHR11817 5 436 1.1E-170 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS13775 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF52935 324 473 5.04E-19 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 THIMO_RS14530 5af7e72acbdb5885ca67f6d01a30dfcc 296 PANTHER PTHR22572 4 291 1.9E-161 T 23-04-2016 THIMO_RS14530 5af7e72acbdb5885ca67f6d01a30dfcc 296 Pfam PF00483 Nucleotidyl transferase 4 239 9.9E-66 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS14530 5af7e72acbdb5885ca67f6d01a30dfcc 296 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 3.1E-148 T 23-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 THIMO_RS14530 5af7e72acbdb5885ca67f6d01a30dfcc 296 PANTHER PTHR22572:SF105 4 291 1.9E-161 T 23-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 THIMO_RS14530 5af7e72acbdb5885ca67f6d01a30dfcc 296 Gene3D G3DSA:3.90.550.10 1 265 2.9E-63 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS14530 5af7e72acbdb5885ca67f6d01a30dfcc 296 SUPERFAMILY SSF53448 2 288 2.6E-88 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 SUPERFAMILY SSF46689 287 336 1.84E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 PANTHER PTHR11019:SF52 192 335 1.2E-19 T 23-04-2016 THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 PANTHER PTHR11019 192 335 1.2E-19 T 23-04-2016 THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 205 4.8E-30 T 23-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 Gene3D G3DSA:1.10.10.60 286 336 5.8E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 287 329 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 Pfam PF12833 Helix-turn-helix domain 257 334 4.7E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS02885 bdd3723dd79077aedc3a11f50c43e102 339 SMART SM00342 250 333 5.3E-25 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 PANTHER PTHR30109 20 636 1.2E-129 T 23-04-2016 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 SUPERFAMILY SSF56821 6 635 2.09E-166 T 23-04-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 PANTHER PTHR30109:SF4 20 636 1.2E-129 T 23-04-2016 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 Gene3D G3DSA:3.40.50.2030 422 636 8.0E-66 T 23-04-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 Gene3D G3DSA:1.20.1270.30 70 245 5.5E-56 T 23-04-2016 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.99.2|KEGG: 00680+1.2.99.2|KEGG: 00720+1.2.99.2|MetaCyc: PWY-5372|MetaCyc: PWY-6780 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 Gene3D G3DSA:3.40.50.2030 249 421 5.1E-52 T 23-04-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 Pfam PF03063 Prismane/CO dehydrogenase family 56 615 7.1E-128 T 23-04-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 THIMO_RS01070 b5f827b597d4147aa7787e38693168c0 670 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 20 634 9.8E-150 T 23-04-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.99.2|KEGG: 00680+1.2.99.2|KEGG: 00720+1.2.99.2|MetaCyc: PWY-5372|MetaCyc: PWY-6780 THIMO_RS02395 b1b62a55f37ff6a33e64194f8a10871d 334 PANTHER PTHR20992 99 306 2.4E-50 T 23-04-2016 THIMO_RS02395 b1b62a55f37ff6a33e64194f8a10871d 334 PANTHER PTHR20992:SF9 99 306 2.4E-50 T 23-04-2016 THIMO_RS02395 b1b62a55f37ff6a33e64194f8a10871d 334 TIGRFAM TIGR00341 TIGR00341: TIGR00341 family protein 41 323 8.8E-56 T 23-04-2016 THIMO_RS02395 b1b62a55f37ff6a33e64194f8a10871d 334 Pfam PF04087 Domain of unknown function (DUF389) 144 279 3.5E-35 T 23-04-2016 IPR005240 Protein of unknown function DUF389 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 SUPERFAMILY SSF53067 9 197 2.16E-63 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.420.40 210 234 1.6E-34 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.420.40 298 352 1.6E-34 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 PANTHER PTHR32432 1 408 2.0E-168 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 10 378 2.5E-156 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.420.40 158 209 5.8E-24 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.420.40 4 83 5.8E-24 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 SUPERFAMILY SSF53067 199 378 1.03E-49 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 PIRSF PIRSF003101 1 411 1.4E-158 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.90.640.10 235 297 7.3E-20 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 8.6E-34 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 SMART SM00842 10 196 4.2E-105 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Pfam PF14450 Cell division protein FtsA 207 374 3.1E-26 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Pfam PF14450 Cell division protein FtsA 11 187 5.7E-13 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 411 31.954 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.1490.110 97 157 2.1E-18 T 23-04-2016 THIMO_RS14755 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 PANTHER PTHR32432:SF4 1 408 2.0E-168 T 23-04-2016 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 644 5.4E-231 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 641 4.2E-121 T 23-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PANTHER PTHR30009 1 417 2.3E-290 T 23-04-2016 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PANTHER PTHR30009 471 659 2.3E-290 T 23-04-2016 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.1E-94 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 634 647 3.7E-53 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PANTHER PTHR30009:SF0 1 417 2.3E-290 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 PANTHER PTHR30009:SF0 471 659 2.3E-290 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 THIMO_RS06480 dd6aebe841fcc1c95a50ee4594413adc 661 Pfam PF01578 Cytochrome C assembly protein 89 295 8.9E-55 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 THIMO_RS13885 f54e085a403ec9efa3b3b52a70a3c8bd 217 PANTHER PTHR30336 1 192 2.7E-76 T 23-04-2016 THIMO_RS13885 f54e085a403ec9efa3b3b52a70a3c8bd 217 Gene3D G3DSA:3.40.50.620 24 149 1.8E-8 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS13885 f54e085a403ec9efa3b3b52a70a3c8bd 217 PANTHER PTHR30336:SF0 1 192 2.7E-76 T 23-04-2016 THIMO_RS13885 f54e085a403ec9efa3b3b52a70a3c8bd 217 Pfam PF02698 DUF218 domain 29 149 2.8E-20 T 23-04-2016 IPR003848 Domain of unknown function DUF218 THIMO_RS09995 e96490522b3da13b8bc68455e9b48b8e 316 PANTHER PTHR31752:SF13 98 312 1.8E-61 T 23-04-2016 THIMO_RS09995 e96490522b3da13b8bc68455e9b48b8e 316 PANTHER PTHR31752 98 312 1.8E-61 T 23-04-2016 THIMO_RS09995 e96490522b3da13b8bc68455e9b48b8e 316 Pfam PF03547 Membrane transport protein 162 305 2.6E-10 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 THIMO_RS10800 35c62b171eeed4281bf86f65c25e8423 335 Gene3D G3DSA:3.30.1330.40 119 179 3.5E-4 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS10800 35c62b171eeed4281bf86f65c25e8423 335 SUPERFAMILY SSF55298 119 194 6.9E-5 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS10800 35c62b171eeed4281bf86f65c25e8423 335 SUPERFAMILY SSF55298 231 331 2.86E-10 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS10800 35c62b171eeed4281bf86f65c25e8423 335 Gene3D G3DSA:3.30.1330.40 232 332 2.2E-9 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS13565 54d8df86e9b2d54c898d0c365c129442 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.091 T 23-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid THIMO_RS13565 54d8df86e9b2d54c898d0c365c129442 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 5.9E-24 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13565 54d8df86e9b2d54c898d0c365c129442 101 Gene3D G3DSA:4.10.830.10 43 101 4.5E-27 T 23-04-2016 THIMO_RS13565 54d8df86e9b2d54c898d0c365c129442 101 SUPERFAMILY SSF57716 2 101 7.13E-35 T 23-04-2016 THIMO_RS13565 54d8df86e9b2d54c898d0c365c129442 101 PANTHER PTHR19836 1 101 1.7E-50 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS17300 e239f104c750f6362ff1c51d15d13654 282 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 15 253 2.5E-48 T 23-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region THIMO_RS17300 e239f104c750f6362ff1c51d15d13654 282 SUPERFAMILY SSF63829 10 278 1.03E-46 T 23-04-2016 THIMO_RS17300 e239f104c750f6362ff1c51d15d13654 282 PANTHER PTHR10907 1 279 1.6E-37 T 23-04-2016 THIMO_RS17300 e239f104c750f6362ff1c51d15d13654 282 PANTHER PTHR10907:SF47 1 279 1.6E-37 T 23-04-2016 THIMO_RS17300 e239f104c750f6362ff1c51d15d13654 282 Gene3D G3DSA:2.120.10.30 7 280 1.6E-56 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like THIMO_RS04425 fb4fee698af89bf19f01a96a50c2692b 254 Pfam PF02361 Cobalt transport protein 18 219 5.7E-27 T 23-04-2016 IPR003339 ABC/ECF transporter, transmembrane component THIMO_RS04425 fb4fee698af89bf19f01a96a50c2692b 254 PANTHER PTHR34857:SF2 21 254 7.3E-36 T 23-04-2016 THIMO_RS04425 fb4fee698af89bf19f01a96a50c2692b 254 PANTHER PTHR34857 21 254 7.3E-36 T 23-04-2016 THIMO_RS04425 fb4fee698af89bf19f01a96a50c2692b 254 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 21 215 3.2E-41 T 23-04-2016 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 THIMO_RS00585 5e9d81e454ffb8f5ee725da66ae58fee 255 SUPERFAMILY SSF53218 12 205 6.41E-28 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS00585 5e9d81e454ffb8f5ee725da66ae58fee 255 Pfam PF00994 Probable molybdopterin binding domain 15 168 2.6E-19 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS00585 5e9d81e454ffb8f5ee725da66ae58fee 255 PANTHER PTHR13939 11 203 2.5E-30 T 23-04-2016 THIMO_RS00585 5e9d81e454ffb8f5ee725da66ae58fee 255 Gene3D G3DSA:3.40.980.10 9 178 2.5E-22 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS00585 5e9d81e454ffb8f5ee725da66ae58fee 255 SMART SM00852 14 174 5.0E-25 T 23-04-2016 IPR001453 MoaB/Mog domain THIMO_RS11645 85fd24ec2a8856c4fb7025452db24c8b 261 Gene3D G3DSA:3.40.50.1820 25 257 1.2E-51 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS11645 85fd24ec2a8856c4fb7025452db24c8b 261 PANTHER PTHR22946:SF0 1 259 2.0E-65 T 23-04-2016 THIMO_RS11645 85fd24ec2a8856c4fb7025452db24c8b 261 SUPERFAMILY SSF53474 25 258 6.89E-47 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS11645 85fd24ec2a8856c4fb7025452db24c8b 261 Pfam PF01738 Dienelactone hydrolase family 37 258 7.9E-49 T 23-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 THIMO_RS11645 85fd24ec2a8856c4fb7025452db24c8b 261 PANTHER PTHR22946 1 259 2.0E-65 T 23-04-2016 THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 PANTHER PTHR19278 1 212 2.1E-111 T 23-04-2016 THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 219 34.491 T 23-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 Gene3D G3DSA:3.40.50.2020 7 212 1.3E-80 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 SUPERFAMILY SSF53271 3 201 1.17E-49 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 PANTHER PTHR19278:SF36 1 212 2.1E-111 T 23-04-2016 THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 187 3.5E-62 T 23-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 THIMO_RS03570 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 Pfam PF00156 Phosphoribosyl transferase domain 49 167 3.7E-15 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 SUPERFAMILY SSF111369 58 271 4.45E-43 T 23-04-2016 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 268 8.9E-30 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 Pfam PF00529 HlyD membrane-fusion protein of T1SS 20 337 2.0E-6 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 PANTHER PTHR30469:SF11 1 363 7.5E-109 T 23-04-2016 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 PANTHER PTHR30469 1 363 7.5E-109 T 23-04-2016 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 Gene3D G3DSA:2.40.50.100 162 191 5.0E-13 T 23-04-2016 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 Gene3D G3DSA:2.40.50.100 74 101 5.0E-13 T 23-04-2016 THIMO_RS08940 39246f6a8d52b1ed867803671176b0f2 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 352 2.0E-77 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 Gene3D G3DSA:1.10.287.890 194 275 7.2E-33 T 23-04-2016 THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 Gene3D G3DSA:3.40.50.300 1 162 6.9E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 1 306 26.602 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 1 286 6.8E-94 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 SUPERFAMILY SSF52540 1 142 8.44E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 Pfam PF01715 IPP transferase 30 277 6.9E-80 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 THIMO_RS11445 946685abd4a9f7b0c85758c525f15180 317 PANTHER PTHR11088 1 282 6.7E-97 T 23-04-2016 THIMO_RS17585 aaff5b4ab42cf4d8a937a371003ede2b 474 SUPERFAMILY SSF55931 39 448 2.26E-45 T 23-04-2016 THIMO_RS17585 aaff5b4ab42cf4d8a937a371003ede2b 474 PIRSF PIRSF012666 1 474 6.9E-140 T 23-04-2016 IPR016602 Uncharacterised conserved protein UCP012666 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 2.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 2.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 2.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 PANTHER PTHR10992 3 270 1.9E-53 T 23-04-2016 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 18 269 34.727 T 23-04-2016 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 Gene3D G3DSA:3.40.50.1820 8 270 3.0E-64 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 23 269 3.0E-77 T 23-04-2016 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 Pfam PF00561 alpha/beta hydrolase fold 23 257 6.2E-25 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 SUPERFAMILY SSF53474 7 270 8.11E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS04185 1957431e9bc3f68d5d2ad40154591f66 275 PANTHER PTHR10992:SF880 3 270 1.9E-53 T 23-04-2016 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 PANTHER PTHR23321 97 321 2.6E-40 T 23-04-2016 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 PANTHER PTHR23321 11 79 2.6E-40 T 23-04-2016 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 SUPERFAMILY SSF54966 5 147 3.93E-41 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 153 431 1.9E-57 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 11 143 2.0E-5 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 PANTHER PTHR23321:SF19 97 321 2.6E-40 T 23-04-2016 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 PANTHER PTHR23321:SF19 11 79 2.6E-40 T 23-04-2016 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 Gene3D G3DSA:3.30.70.150 4 147 8.9E-40 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 SUPERFAMILY SSF51649 148 429 1.27E-87 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS04210 3637a2666e7c45142c4a5203d51e6742 435 Gene3D G3DSA:3.20.20.110 148 432 5.3E-73 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 Pfam PF00202 Aminotransferase class-III 34 395 7.9E-79 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 Gene3D G3DSA:3.90.1150.10 319 424 9.9E-42 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 Gene3D G3DSA:3.90.1150.10 2 69 9.9E-42 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 425 105.767 T 23-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 SUPERFAMILY SSF53383 2 424 1.07E-135 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 Gene3D G3DSA:3.40.640.10 70 315 2.0E-85 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 PANTHER PTHR11986:SF5 1 425 1.1E-225 T 23-04-2016 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 424 1.1E-192 T 23-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 THIMO_RS00325 4bc25729647570dd1c70ef1e9c0afbcd 427 PANTHER PTHR11986 1 425 1.1E-225 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 THIMO_RS01950 35957ebb4fea0592ebf1d8ed28a4096a 591 Gene3D G3DSA:2.40.160.50 302 588 2.2E-20 T 23-04-2016 THIMO_RS01950 35957ebb4fea0592ebf1d8ed28a4096a 591 Pfam PF01103 Surface antigen 300 587 2.8E-29 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 THIMO_RS01950 35957ebb4fea0592ebf1d8ed28a4096a 591 PANTHER PTHR12815 9 591 1.4E-126 T 23-04-2016 THIMO_RS01950 35957ebb4fea0592ebf1d8ed28a4096a 591 PANTHER PTHR12815:SF12 9 591 1.4E-126 T 23-04-2016 THIMO_RS01950 35957ebb4fea0592ebf1d8ed28a4096a 591 Pfam PF07244 Surface antigen variable number repeat 196 265 1.9E-4 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:1.20.59.10 2 90 1.6E-23 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Pfam PF00800 Prephenate dehydratase 93 268 1.2E-64 T 23-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 TIGRFAM TIGR01807 CM_P2: chorismate mutase 7 81 1.1E-27 T 23-04-2016 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00121 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:3.40.190.10 91 176 3.9E-31 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Pfam PF01817 Chorismate mutase type II 11 89 1.3E-23 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:3.40.190.10 177 255 6.3E-30 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 305 312 - T 23-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Pfam PF01842 ACT domain 279 340 2.9E-10 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 PANTHER PTHR21022 3 357 1.3E-132 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 SUPERFAMILY SSF53850 92 275 4.7E-61 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 PANTHER PTHR21022:SF0 3 357 1.3E-132 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:3.30.70.260 272 357 3.3E-28 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 PIRSF PIRSF001500 1 360 2.1E-139 T 23-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 SUPERFAMILY SSF48600 6 95 5.8E-21 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 SUPERFAMILY SSF55021 262 357 1.88E-25 T 23-04-2016 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 243 265 - T 23-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 THIMO_RS06235 80862ec8313ebf9e11c3577e02895841 360 SMART SM00830 11 91 1.7E-29 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PANTHER PTHR12128 1 291 3.3E-134 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 9.0E-32 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 9.0E-32 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 9.0E-32 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 9.0E-32 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 287 1.2E-105 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 SUPERFAMILY SSF51569 1 290 1.99E-102 T 23-04-2016 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 1.9E-102 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PANTHER PTHR12128:SF34 1 291 3.3E-134 T 23-04-2016 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 Gene3D G3DSA:3.20.20.70 1 291 3.6E-117 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 65.106 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 23-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 23-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 SMART SM01130 1 289 6.5E-142 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS14105 171496e585096cf2cc03dad3e3ad4f76 291 PIRSF PIRSF001365 1 290 8.3E-91 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 THIMO_RS12830 51fea5c4745fd7e754fe5bfe0fbd9c26 434 Pfam PF17192 MukF middle domain 125 277 7.2E-26 T 23-04-2016 IPR033440 Chromosome partition protein MukF, middle domain THIMO_RS12830 51fea5c4745fd7e754fe5bfe0fbd9c26 434 Gene3D G3DSA:1.10.10.10 21 114 3.6E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12830 51fea5c4745fd7e754fe5bfe0fbd9c26 434 Pfam PF03882 MukF winged-helix domain 12 113 5.6E-10 T 23-04-2016 IPR033439 Chromosome partition protein MukF, winged-helix domain THIMO_RS12830 51fea5c4745fd7e754fe5bfe0fbd9c26 434 SUPERFAMILY SSF140570 117 277 1.09E-51 T 23-04-2016 IPR033440 Chromosome partition protein MukF, middle domain THIMO_RS12830 51fea5c4745fd7e754fe5bfe0fbd9c26 434 SUPERFAMILY SSF46785 6 114 2.79E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16815 1e433541b67b23a5a3315266ad7ba138 204 Gene3D G3DSA:1.20.950.20 50 200 4.3E-9 T 23-04-2016 THIMO_RS16815 1e433541b67b23a5a3315266ad7ba138 204 PANTHER PTHR30485:SF0 51 199 2.0E-12 T 23-04-2016 THIMO_RS16815 1e433541b67b23a5a3315266ad7ba138 204 Pfam PF01292 Prokaryotic cytochrome b561 22 197 2.7E-24 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS16815 1e433541b67b23a5a3315266ad7ba138 204 SUPERFAMILY SSF81342 19 200 1.33E-35 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS16815 1e433541b67b23a5a3315266ad7ba138 204 PANTHER PTHR30485 51 199 2.0E-12 T 23-04-2016 THIMO_RS04840 5b1800588658f2d4b566b3549619dadd 216 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 36 109 6.6E-16 T 23-04-2016 IPR025159 Transcriptional regulator, AbiEi antitoxin THIMO_RS13300 e05dda766dee83ec0c414c9e28d230b2 373 PANTHER PTHR23091:SF256 1 178 8.0E-41 T 23-04-2016 THIMO_RS13300 e05dda766dee83ec0c414c9e28d230b2 373 Pfam PF00583 Acetyltransferase (GNAT) family 44 122 1.1E-12 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS13300 e05dda766dee83ec0c414c9e28d230b2 373 Pfam PF11814 Peptidase_C39 like family 155 361 1.1E-84 T 23-04-2016 IPR021770 Protein of unknown function DUF3335 THIMO_RS13300 e05dda766dee83ec0c414c9e28d230b2 373 SUPERFAMILY SSF55729 1 144 4.36E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS13300 e05dda766dee83ec0c414c9e28d230b2 373 Gene3D G3DSA:3.40.630.30 1 144 1.3E-31 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS13300 e05dda766dee83ec0c414c9e28d230b2 373 PANTHER PTHR23091 1 178 8.0E-41 T 23-04-2016 THIMO_RS17375 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 PANTHER PTHR30177:SF2 9 276 3.3E-120 T 23-04-2016 THIMO_RS17375 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 Gene3D G3DSA:1.10.3720.10 83 273 8.9E-38 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS17375 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 SUPERFAMILY SSF161098 89 272 9.03E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS17375 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 PANTHER PTHR30177 9 276 3.3E-120 T 23-04-2016 THIMO_RS17375 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 272 4.5E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS00685 21bb902e43e7cc785aed314a1c50e98c 291 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 30 282 1.5E-16 T 23-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 THIMO_RS00685 21bb902e43e7cc785aed314a1c50e98c 291 SUPERFAMILY SSF51197 16 285 6.87E-36 T 23-04-2016 THIMO_RS00685 21bb902e43e7cc785aed314a1c50e98c 291 Gene3D G3DSA:3.60.130.10 99 286 2.2E-19 T 23-04-2016 THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 PANTHER PTHR11938:SF86 55 255 3.3E-43 T 23-04-2016 THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 Gene3D G3DSA:3.30.70.20 55 129 1.0E-11 T 23-04-2016 THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 Pfam PF13247 4Fe-4S dicluster domain 121 218 1.6E-14 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 157 168 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 SUPERFAMILY SSF54862 55 244 7.95E-49 T 23-04-2016 THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 PANTHER PTHR11938 55 255 3.3E-43 T 23-04-2016 THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 Gene3D G3DSA:3.30.70.20 190 249 7.6E-12 T 23-04-2016 THIMO_RS00740 59b0f8640f7752268ed05b24f3aa6296 263 Gene3D G3DSA:3.30.70.20 131 177 5.4E-25 T 23-04-2016 THIMO_RS16985 8ad55c04d32a1fe73c437e2327943fe8 268 Gene3D G3DSA:2.60.120.620 2 192 1.2E-15 T 23-04-2016 THIMO_RS16985 8ad55c04d32a1fe73c437e2327943fe8 268 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 2 180 2.6E-10 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase THIMO_RS16985 8ad55c04d32a1fe73c437e2327943fe8 268 SUPERFAMILY SSF51197 2 201 9.16E-23 T 23-04-2016 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 Gene3D G3DSA:3.40.50.1370 2 140 1.8E-54 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 2.0E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 2.0E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 2.0E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 2.0E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 2.0E-30 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 297 2.2E-51 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 SUPERFAMILY SSF53671 2 300 2.23E-103 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PANTHER PTHR11405:SF1 4 298 3.3E-144 T 23-04-2016 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 143 3.8E-48 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 2.8E-25 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 2.8E-25 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 2.8E-25 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 2.8E-25 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 79.801 T 23-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 PANTHER PTHR11405 4 298 3.3E-144 T 23-04-2016 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 299 3.1E-117 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 THIMO_RS15630 9ef7df71ead3e4577a592f71274076f7 303 Gene3D G3DSA:3.40.50.1370 141 286 1.3E-59 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 Pfam PF01676 Metalloenzyme superfamily 11 496 1.9E-68 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 SUPERFAMILY SSF53649 9 83 4.84E-65 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 SUPERFAMILY SSF53649 313 508 4.84E-65 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 11 508 2.4E-188 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 88 297 9.9E-76 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 PANTHER PTHR31637 1 512 1.9E-232 T 23-04-2016 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 Gene3D G3DSA:3.40.720.10 10 83 1.7E-72 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 Gene3D G3DSA:3.40.720.10 312 508 1.7E-72 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 PANTHER PTHR31637:SF0 1 512 1.9E-232 T 23-04-2016 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 PIRSF PIRSF001492 5 511 2.3E-185 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 Gene3D G3DSA:3.40.1450.10 84 307 1.5E-85 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 SUPERFAMILY SSF64158 83 305 3.14E-77 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS16060 221717b11757e96c3faebc16e7614c8f 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 10 509 44.534 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 Pfam PF00106 short chain dehydrogenase 8 182 7.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 7.3E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 7.3E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.3E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 7.3E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 177 4.5E-4 T 23-04-2016 THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 SUPERFAMILY SSF51735 6 234 7.06E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 Gene3D G3DSA:3.40.50.720 7 234 9.9E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PANTHER PTHR24322 143 173 2.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PANTHER PTHR24322 11 127 2.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PANTHER PTHR24322:SF386 143 173 2.8E-24 T 23-04-2016 THIMO_RS01875 af9360a91b551d7fed751ff3e7f9961b 255 PANTHER PTHR24322:SF386 11 127 2.8E-24 T 23-04-2016 THIMO_RS14050 a7632d06bc3fc93c467f04b94288cb2f 106 Pfam PF00936 BMC domain 9 85 9.3E-26 T 23-04-2016 IPR000249 Microcompartment protein, bacteria THIMO_RS14050 a7632d06bc3fc93c467f04b94288cb2f 106 SMART SM00877 8 85 8.5E-31 T 23-04-2016 IPR000249 Microcompartment protein, bacteria THIMO_RS14050 a7632d06bc3fc93c467f04b94288cb2f 106 PANTHER PTHR33941 9 94 1.2E-32 T 23-04-2016 THIMO_RS14050 a7632d06bc3fc93c467f04b94288cb2f 106 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 26 45 - T 23-04-2016 IPR020808 Bacterial microcompartments protein, conserved site THIMO_RS14050 a7632d06bc3fc93c467f04b94288cb2f 106 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 9 70 3.0E-19 T 23-04-2016 THIMO_RS14050 a7632d06bc3fc93c467f04b94288cb2f 106 SUPERFAMILY SSF143414 9 95 5.49E-28 T 23-04-2016 THIMO_RS18340 92c13f48688e2faf05f20f9a8ca6dedc 605 Pfam PF13699 Domain of unknown function (DUF4157) 55 129 3.3E-27 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 THIMO_RS18120 d698b7a41540701744aa0a8eca74ca32 168 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 32 1.4E-9 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18120 d698b7a41540701744aa0a8eca74ca32 168 Gene3D G3DSA:3.30.700.10 12 166 5.6E-26 T 23-04-2016 THIMO_RS18120 d698b7a41540701744aa0a8eca74ca32 168 Pfam PF00114 Pilin (bacterial filament) 41 165 1.9E-8 T 23-04-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 THIMO_RS18120 d698b7a41540701744aa0a8eca74ca32 168 Pfam PF13633 Prokaryotic N-terminal methylation site 9 35 1.7E-10 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18120 d698b7a41540701744aa0a8eca74ca32 168 SUPERFAMILY SSF54523 12 165 4.71E-19 T 23-04-2016 THIMO_RS18120 d698b7a41540701744aa0a8eca74ca32 168 PANTHER PTHR30093 1 72 1.1E-15 T 23-04-2016 THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 14 263 2.5E-74 T 23-04-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 6 264 33.482 T 23-04-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 Pfam PF08241 Methyltransferase domain 51 147 3.3E-26 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 PANTHER PTHR13090:SF3 7 265 1.8E-68 T 23-04-2016 THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 Gene3D G3DSA:3.40.50.150 29 263 4.4E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 SUPERFAMILY SSF53335 12 243 3.22E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS14410 a781456d5b65247b74d16f69fa43b00e 289 PANTHER PTHR13090 7 265 1.8E-68 T 23-04-2016 THIMO_RS06485 cc63418b55f6a569f0d242ec020276a2 151 Pfam PF03100 CcmE 4 130 8.7E-45 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 THIMO_RS06485 cc63418b55f6a569f0d242ec020276a2 151 PANTHER PTHR34128 1 142 5.4E-49 T 23-04-2016 THIMO_RS06485 cc63418b55f6a569f0d242ec020276a2 151 SUPERFAMILY SSF82093 29 135 4.19E-38 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 THIMO_RS06485 cc63418b55f6a569f0d242ec020276a2 151 Gene3D G3DSA:2.40.50.140 26 124 3.2E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS06485 cc63418b55f6a569f0d242ec020276a2 151 PANTHER PTHR34128:SF1 1 142 5.4E-49 T 23-04-2016 THIMO_RS06485 cc63418b55f6a569f0d242ec020276a2 151 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 140 31.441 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 THIMO_RS16425 71fce432c75e0fc7dd946c2d6d1d1350 317 PANTHER PTHR30408 29 123 1.8E-24 T 23-04-2016 THIMO_RS16425 71fce432c75e0fc7dd946c2d6d1d1350 317 SUPERFAMILY SSF116734 96 313 3.43E-32 T 23-04-2016 THIMO_RS16425 71fce432c75e0fc7dd946c2d6d1d1350 317 Pfam PF01420 Type I restriction modification DNA specificity domain 26 71 3.5E-4 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 THIMO_RS16425 71fce432c75e0fc7dd946c2d6d1d1350 317 SUPERFAMILY SSF116734 3 97 1.64E-17 T 23-04-2016 THIMO_RS16425 71fce432c75e0fc7dd946c2d6d1d1350 317 PANTHER PTHR30408:SF6 29 123 1.8E-24 T 23-04-2016 THIMO_RS12820 2a92fea9f0b52c17556514738d4c5d7d 1474 Gene3D G3DSA:3.40.1140.10 3 220 1.2E-21 T 23-04-2016 THIMO_RS12820 2a92fea9f0b52c17556514738d4c5d7d 1474 Pfam PF16330 MukB hinge domain 642 800 4.6E-48 T 23-04-2016 IPR032520 MukB, hinge domain THIMO_RS12820 2a92fea9f0b52c17556514738d4c5d7d 1474 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1337 1427 9.6E-9 T 23-04-2016 THIMO_RS12820 2a92fea9f0b52c17556514738d4c5d7d 1474 Pfam PF04310 MukB N-terminal 2 222 1.1E-87 T 23-04-2016 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 SUPERFAMILY SSF53756 24 829 0.0 T 23-04-2016 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 PIRSF PIRSF000460 26 833 8.6E-223 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 Pfam PF00343 Carbohydrate phosphorylase 116 827 0.0 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 29 826 0.0 T 23-04-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 Gene3D G3DSA:3.40.50.2000 498 812 2.5E-125 T 23-04-2016 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 PANTHER PTHR11468 29 830 0.0 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 PANTHER PTHR11468:SF3 29 830 0.0 T 23-04-2016 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 672 684 - T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS00490 1715383ccd578d39b9cf4a82b3a804fa 836 Gene3D G3DSA:3.40.50.2000 25 497 3.1E-206 T 23-04-2016 THIMO_RS16410 5653b49a44748ed4299daaa435216736 90 Pfam PF08681 Protein of unknown function (DUF1778) 6 80 6.5E-26 T 23-04-2016 IPR014795 Vibrio phage ICP1, Orf50 THIMO_RS16410 5653b49a44748ed4299daaa435216736 90 PANTHER PTHR35401:SF1 1 89 2.0E-30 T 23-04-2016 THIMO_RS16410 5653b49a44748ed4299daaa435216736 90 SUPERFAMILY SSF47598 1 79 1.45E-21 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 THIMO_RS16410 5653b49a44748ed4299daaa435216736 90 PANTHER PTHR35401 1 89 2.0E-30 T 23-04-2016 THIMO_RS16410 5653b49a44748ed4299daaa435216736 90 Gene3D G3DSA:1.20.5.780 3 81 4.0E-19 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 Gene3D G3DSA:3.40.50.2000 305 396 2.3E-4 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 SUPERFAMILY SSF53756 56 420 2.03E-19 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 PANTHER PTHR23417:SF2 189 421 4.8E-110 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 PANTHER PTHR23417:SF2 129 139 4.8E-110 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 PANTHER PTHR23417:SF2 1 110 4.8E-110 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 PANTHER PTHR23417 189 421 4.8E-110 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 PANTHER PTHR23417 129 139 4.8E-110 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 PANTHER PTHR23417 1 110 4.8E-110 T 23-04-2016 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 Pfam PF00534 Glycosyl transferases group 1 238 399 1.2E-10 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS09310 b8f440b7e9474376126f6f7399917b5b 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 209 2.2E-66 T 23-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 THIMO_RS05320 7aab563c8b8cb27831e13e023224d083 343 Gene3D G3DSA:3.40.50.410 99 278 6.8E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05320 7aab563c8b8cb27831e13e023224d083 343 PANTHER PTHR22550 71 328 1.7E-17 T 23-04-2016 THIMO_RS05320 7aab563c8b8cb27831e13e023224d083 343 SMART SM00327 95 292 4.9E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05320 7aab563c8b8cb27831e13e023224d083 343 PANTHER PTHR22550:SF8 71 328 1.7E-17 T 23-04-2016 THIMO_RS05320 7aab563c8b8cb27831e13e023224d083 343 SUPERFAMILY SSF53300 99 281 2.43E-18 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05320 7aab563c8b8cb27831e13e023224d083 343 Pfam PF13519 von Willebrand factor type A domain 99 207 4.2E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS18060 565b1b2ba70f7bc315fc725b3640660f 277 Gene3D G3DSA:2.30.30.240 88 148 3.1E-8 T 23-04-2016 THIMO_RS18060 565b1b2ba70f7bc315fc725b3640660f 277 Pfam PF05239 PRC-barrel domain 89 157 7.4E-10 T 23-04-2016 IPR027275 PRC-barrel domain THIMO_RS18060 565b1b2ba70f7bc315fc725b3640660f 277 PANTHER PTHR36505 88 199 2.4E-13 T 23-04-2016 THIMO_RS18060 565b1b2ba70f7bc315fc725b3640660f 277 SUPERFAMILY SSF50346 79 175 2.98E-12 T 23-04-2016 IPR011033 PRC-barrel-like THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 101 2.0E-10 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 SUPERFAMILY SSF46946 122 205 1.91E-15 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 SUPERFAMILY SSF57716 216 260 1.4E-9 T 23-04-2016 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 SMART SM01232 123 215 4.5E-14 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 SMART SM00898 2 107 8.2E-11 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 ProSitePatterns PS01242 Zinc finger FPG-type signature. 234 260 - T 23-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 Gene3D G3DSA:1.10.8.50 123 260 1.4E-32 T 23-04-2016 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 123 207 9.7E-11 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 SUPERFAMILY SSF81624 2 96 3.14E-18 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 PANTHER PTHR22993:SF13 1 262 8.5E-28 T 23-04-2016 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 PANTHER PTHR22993 1 262 8.5E-28 T 23-04-2016 THIMO_RS07595 f0d111655fb6280cc978543d7fb54d11 262 Gene3D G3DSA:3.20.190.10 2 96 1.1E-13 T 23-04-2016 THIMO_RS09645 b27aa5ee951e65134d43980804c7ef3a 362 PANTHER PTHR21716 17 362 2.8E-68 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS09645 b27aa5ee951e65134d43980804c7ef3a 362 PANTHER PTHR21716:SF20 17 362 2.8E-68 T 23-04-2016 THIMO_RS09645 b27aa5ee951e65134d43980804c7ef3a 362 Pfam PF01594 Domain of unknown function DUF20 25 351 2.3E-29 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 PANTHER PTHR30469:SF15 19 334 4.9E-76 T 23-04-2016 THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 264 1.0E-22 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 SUPERFAMILY SSF111369 41 266 3.27E-29 T 23-04-2016 THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 333 4.9E-65 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 Gene3D G3DSA:2.40.50.100 160 190 4.1E-14 T 23-04-2016 THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 Gene3D G3DSA:2.40.50.100 53 85 4.1E-14 T 23-04-2016 THIMO_RS09835 baea86574e12fe81ed8d3e9516f870b8 353 PANTHER PTHR30469 19 334 4.9E-76 T 23-04-2016 THIMO_RS05515 07637947ac018427f66a35b1e8eed93b 296 PANTHER PTHR30425 19 293 3.6E-88 T 23-04-2016 THIMO_RS05515 07637947ac018427f66a35b1e8eed93b 296 PANTHER PTHR30425:SF0 19 293 3.6E-88 T 23-04-2016 THIMO_RS05515 07637947ac018427f66a35b1e8eed93b 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 32 292 4.2E-74 T 23-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 THIMO_RS05515 07637947ac018427f66a35b1e8eed93b 296 SUPERFAMILY SSF161098 38 288 3.64E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS05515 07637947ac018427f66a35b1e8eed93b 296 Gene3D G3DSA:1.10.3720.10 32 291 2.1E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS05515 07637947ac018427f66a35b1e8eed93b 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 291 5.7E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS12045 06f1518c64c263235cdcccc7185467c8 251 Gene3D G3DSA:2.50.20.10 22 248 3.0E-61 T 23-04-2016 THIMO_RS12045 06f1518c64c263235cdcccc7185467c8 251 Pfam PF17131 Outer membrane lipoprotein-sorting protein 67 247 9.2E-50 T 23-04-2016 IPR033399 Putative outer membrane lipoprotein-sorting protein THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 Pfam PF08298 PrkA AAA domain 19 376 8.7E-174 T 23-04-2016 IPR013153 PrkA AAA domain THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 Gene3D G3DSA:3.40.50.300 239 325 7.7E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 Gene3D G3DSA:3.40.50.300 75 154 7.7E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 4.4E-73 T 23-04-2016 IPR010650 PrkA C-terminal domain THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 PANTHER PTHR30267:SF2 1 640 3.0E-273 T 23-04-2016 THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 PANTHER PTHR30267 1 640 3.0E-273 T 23-04-2016 THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 SUPERFAMILY SSF52540 75 344 5.5E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 PIRSF PIRSF000549 1 640 3.3E-285 T 23-04-2016 IPR016230 Serine-protein kinase, PrkA GO:0004672 THIMO_RS16735 01077deca39dc2c69f76a57774da3462 640 SMART SM00763 19 376 1.1E-215 T 23-04-2016 IPR013153 PrkA AAA domain THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 Pfam PF00366 Ribosomal protein S17 13 80 1.3E-33 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 78 2.5E-36 T 23-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 SUPERFAMILY SSF50249 8 85 1.63E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 ProSitePatterns PS00056 Ribosomal protein S17 signature. 59 71 - T 23-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 5.2E-13 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 5.2E-13 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 5.2E-13 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 79 6.0E-26 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 PANTHER PTHR10744 9 84 2.6E-39 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 84 25.594 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13585 78a9b03e1220d454d4daefcccc071425 86 Gene3D G3DSA:2.40.50.140 8 84 6.5E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 Pfam PF02954 Bacterial regulatory protein, Fis family 56 96 1.9E-16 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 79 99 5.9E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 62 79 5.9E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PANTHER PTHR32071 25 98 2.4E-20 T 23-04-2016 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PIRSF PIRSF002097 2 99 2.9E-31 T 23-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01591 DNA-binding protein FIS signature 27 43 1.6E-9 T 23-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01591 DNA-binding protein FIS signature 58 70 1.6E-9 T 23-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01591 DNA-binding protein FIS signature 43 58 1.6E-9 T 23-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 SUPERFAMILY SSF46689 24 98 6.81E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS00900 c3324566e3c0c4ad0fd45523f6ff4fa9 102 Gene3D G3DSA:1.10.10.60 28 98 3.1E-26 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS07130 c7424e50619c2fe7122de2cc8de0ae77 212 SUPERFAMILY SSF160527 82 199 9.68E-17 T 23-04-2016 THIMO_RS07130 c7424e50619c2fe7122de2cc8de0ae77 212 Pfam PF01991 ATP synthase (E/31 kDa) subunit 11 199 8.4E-18 T 23-04-2016 IPR002842 ATPase, V1/A1 complex, subunit E GO:0015991|GO:0033178|GO:0046961 THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 Pfam PF00308 Bacterial dnaA protein 19 70 7.4E-7 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 Pfam PF00308 Bacterial dnaA protein 95 210 1.2E-10 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 7 229 8.1E-74 T 23-04-2016 IPR017788 DnaA regulatory inactivator Hda GO:0032297 THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 PANTHER PTHR30050 7 232 1.2E-72 T 23-04-2016 THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 SUPERFAMILY SSF52540 39 210 1.47E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 Gene3D G3DSA:1.10.8.60 166 230 7.3E-19 T 23-04-2016 THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 PANTHER PTHR30050:SF5 7 232 1.2E-72 T 23-04-2016 THIMO_RS07810 b23c14d937b19e110d3f96d8140f1f78 237 Gene3D G3DSA:3.40.50.300 6 163 6.8E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00265 11717a7e648b28dad6730fad50b3d353 220 SMART SM00464 16 207 1.4E-21 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 THIMO_RS00265 11717a7e648b28dad6730fad50b3d353 220 SUPERFAMILY SSF88697 16 205 2.41E-47 T 23-04-2016 IPR015947 PUA-like domain THIMO_RS00265 11717a7e648b28dad6730fad50b3d353 220 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 17 205 1.9E-28 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 THIMO_RS00265 11717a7e648b28dad6730fad50b3d353 220 PANTHER PTHR10046 12 206 6.4E-30 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 THIMO_RS02825 bd4b4a1f2571f52a11264d36a9458e8f 344 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 337 25.497 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS02825 bd4b4a1f2571f52a11264d36a9458e8f 344 PANTHER PTHR11432:SF3 11 340 1.8E-165 T 23-04-2016 THIMO_RS02825 bd4b4a1f2571f52a11264d36a9458e8f 344 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 THIMO_RS02825 bd4b4a1f2571f52a11264d36a9458e8f 344 PANTHER PTHR11432 11 340 1.8E-165 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS02825 bd4b4a1f2571f52a11264d36a9458e8f 344 Pfam PF00146 NADH dehydrogenase 18 330 8.5E-127 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS02825 bd4b4a1f2571f52a11264d36a9458e8f 344 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 214 227 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 PANTHER PTHR30489:SF6 235 842 9.9E-75 T 23-04-2016 THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 PANTHER PTHR30489:SF6 1 193 9.9E-75 T 23-04-2016 THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF12704 MacB-like periplasmic core domain 486 683 9.9E-7 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF12704 MacB-like periplasmic core domain 20 232 9.2E-9 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF02687 FtsX-like permease family 263 384 1.7E-12 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF02687 FtsX-like permease family 718 833 7.8E-14 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 PANTHER PTHR30489 235 842 9.9E-75 T 23-04-2016 THIMO_RS01445 825fc98af9c23477a31eb6c95bcee36f 843 PANTHER PTHR30489 1 193 9.9E-75 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 544 560 - T 23-04-2016 IPR031312 Sodium/sulphate symporter, conserved site THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 SUPERFAMILY SSF116726 219 299 7.85E-17 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 SUPERFAMILY SSF116726 303 391 5.62E-17 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 PANTHER PTHR10283 32 220 4.3E-122 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 PANTHER PTHR10283 256 272 4.3E-122 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 PANTHER PTHR10283 357 594 4.3E-122 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 PANTHER PTHR10283:SF79 32 220 4.3E-122 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 PANTHER PTHR10283:SF79 256 272 4.3E-122 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 PANTHER PTHR10283:SF79 357 594 4.3E-122 T 23-04-2016 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 Gene3D G3DSA:3.30.70.1450 223 300 1.4E-16 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 Gene3D G3DSA:3.30.70.1450 316 392 1.6E-16 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 Pfam PF03600 Citrate transporter 24 543 1.7E-46 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 Pfam PF02080 TrkA-C domain 226 292 1.5E-11 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS05495 d81a6333230b82ee7d4bcf93e6549979 599 Pfam PF02080 TrkA-C domain 317 377 1.2E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS12420 8168b96e8bea0b58c1c40ffa3afcb5fa 369 PANTHER PTHR30298 2 369 3.3E-105 T 23-04-2016 THIMO_RS12420 8168b96e8bea0b58c1c40ffa3afcb5fa 369 Pfam PF01609 Transposase DDE domain 99 338 2.6E-20 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS12420 8168b96e8bea0b58c1c40ffa3afcb5fa 369 Pfam PF13808 DDE_Tnp_1-associated 5 91 1.2E-27 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 PANTHER PTHR32063 146 320 3.5E-39 T 23-04-2016 THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 Gene3D G3DSA:3.30.2090.10 89 146 3.3E-4 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 Gene3D G3DSA:3.30.2090.10 197 286 2.2E-5 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 Pfam PF00873 AcrB/AcrD/AcrF family 161 307 2.3E-14 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 Pfam PF00873 AcrB/AcrD/AcrF family 1 147 1.0E-11 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 SUPERFAMILY SSF82714 198 284 1.96E-7 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains THIMO_RS10300 634a46b744ef04a0e80c43a920bad97c 320 PANTHER PTHR32063:SF16 146 320 3.5E-39 T 23-04-2016 THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 13 428 37.603 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 PANTHER PTHR21343:SF6 5 435 1.0E-131 T 23-04-2016 THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 SUPERFAMILY SSF52317 244 436 3.77E-33 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 SUPERFAMILY SSF52540 15 201 2.51E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 PANTHER PTHR21343 5 435 1.0E-131 T 23-04-2016 THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 18 197 5.4E-17 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 Gene3D G3DSA:3.40.50.880 246 439 4.1E-24 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 Gene3D G3DSA:3.40.50.300 13 199 2.5E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02360 6ccfef43b028605d4ec50db22551079c 442 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 246 427 1.1E-33 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 213 1.3E-63 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 216 32.553 T 23-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 SUPERFAMILY SSF100950 1 145 2.65E-42 T 23-04-2016 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 48 212 2.4E-57 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 Gene3D G3DSA:3.30.70.260 136 195 7.7E-28 T 23-04-2016 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 PANTHER PTHR11934:SF11 1 219 4.7E-121 T 23-04-2016 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 PANTHER PTHR11934 1 219 4.7E-121 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 Gene3D G3DSA:3.40.50.1360 1 135 3.2E-55 T 23-04-2016 THIMO_RS05680 6987aadc1395a9df62ccb9ecddfc6398 219 SUPERFAMILY SSF75445 126 197 4.06E-23 T 23-04-2016 THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 PIRSF PIRSF002849 5 319 1.9E-113 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 Gene3D G3DSA:1.10.8.300 211 295 7.0E-26 T 23-04-2016 THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 SUPERFAMILY SSF52540 32 295 8.75E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 Gene3D G3DSA:3.40.50.300 32 195 4.5E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 PANTHER PTHR11603:SF155 9 294 3.4E-140 T 23-04-2016 THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 PANTHER PTHR11603 9 294 3.4E-140 T 23-04-2016 THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 49 179 2.3E-61 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 THIMO_RS05540 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 SMART SM00382 46 187 2.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS13025 141a7f14ce37ac1dcff189030ec30c21 903 SUPERFAMILY SSF55166 755 867 5.89E-10 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS13025 141a7f14ce37ac1dcff189030ec30c21 903 TIGRFAM TIGR04096 dnd_rel_methyl: DNA phosphorothioation-associated putative methyltransferase 195 713 1.6E-141 T 23-04-2016 IPR024019 Conserved hypothetical protein CHP04096 THIMO_RS13025 141a7f14ce37ac1dcff189030ec30c21 903 Gene3D G3DSA:3.30.1380.10 744 873 6.8E-7 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS08565 ccd5cc54cf24adf9fbfea04d3e15c152 79 SUPERFAMILY SSF46785 1 73 3.92E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08565 ccd5cc54cf24adf9fbfea04d3e15c152 79 Pfam PF09012 FeoC like transcriptional regulator 2 70 3.2E-20 T 23-04-2016 IPR015102 Transcriptional regulator HTH-type, FeoC THIMO_RS08565 ccd5cc54cf24adf9fbfea04d3e15c152 79 Gene3D G3DSA:1.10.10.10 8 69 9.0E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS15265 d29d531303da5fe65cc73ac2d7b0c1ec 123 Gene3D G3DSA:1.20.120.580 73 118 1.1E-5 T 23-04-2016 THIMO_RS15265 d29d531303da5fe65cc73ac2d7b0c1ec 123 Pfam PF01934 Protein of unknown function DUF86 18 111 2.6E-30 T 23-04-2016 IPR008201 Protein of unknown function DUF86 THIMO_RS15265 d29d531303da5fe65cc73ac2d7b0c1ec 123 PANTHER PTHR34139 4 119 1.7E-37 T 23-04-2016 THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 SUPERFAMILY SSF56059 106 317 7.25E-27 T 23-04-2016 THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 Pfam PF15632 ATP-grasp in the biosynthetic pathway with Ter operon 3 315 8.0E-100 T 23-04-2016 IPR011226 ATP-grasp family THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 Gene3D G3DSA:3.30.470.20 215 310 4.8E-18 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 Gene3D G3DSA:3.30.1490.20 114 175 2.3E-4 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 Gene3D G3DSA:3.40.50.20 3 113 6.4E-13 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 PIRSF PIRSF029120 1 324 2.2E-66 T 23-04-2016 IPR011226 ATP-grasp family THIMO_RS10115 1919d02cbdec3c8f194468f2b9146034 370 SMART SM01209 113 290 0.004 T 23-04-2016 THIMO_RS12625 91dd7903b89358c78f1069fd6e2b754f 271 PANTHER PTHR30622:SF4 1 269 5.9E-96 T 23-04-2016 THIMO_RS12625 91dd7903b89358c78f1069fd6e2b754f 271 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 262 1.5E-68 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 THIMO_RS12625 91dd7903b89358c78f1069fd6e2b754f 271 Pfam PF02673 Bacitracin resistance protein BacA 7 264 7.3E-73 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 THIMO_RS12625 91dd7903b89358c78f1069fd6e2b754f 271 PANTHER PTHR30622 1 269 5.9E-96 T 23-04-2016 THIMO_RS12625 91dd7903b89358c78f1069fd6e2b754f 271 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 269 17.205 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 THIMO_RS18200 640029169ac44cc5214eedd4ba23da18 96 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 1 84 3.8E-15 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain THIMO_RS14855 4b0e024519e201b16825f78fd6b8fb89 248 Gene3D G3DSA:3.40.50.720 2 245 2.2E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14855 4b0e024519e201b16825f78fd6b8fb89 248 Pfam PF00899 ThiF family 9 241 2.9E-61 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 THIMO_RS14855 4b0e024519e201b16825f78fd6b8fb89 248 PANTHER PTHR10953:SF158 1 244 1.9E-84 T 23-04-2016 THIMO_RS14855 4b0e024519e201b16825f78fd6b8fb89 248 SUPERFAMILY SSF69572 1 245 7.98E-88 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 THIMO_RS14855 4b0e024519e201b16825f78fd6b8fb89 248 PANTHER PTHR10953 1 244 1.9E-84 T 23-04-2016 THIMO_RS10705 818ccb8bfbb971671ccf69cae5fe8ec8 357 Pfam PF02445 Quinolinate synthetase A protein 36 342 8.9E-100 T 23-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 THIMO_RS10705 818ccb8bfbb971671ccf69cae5fe8ec8 357 SUPERFAMILY SSF142754 33 343 4.05E-105 T 23-04-2016 THIMO_RS10705 818ccb8bfbb971671ccf69cae5fe8ec8 357 PANTHER PTHR30573 14 347 1.5E-144 T 23-04-2016 THIMO_RS10705 818ccb8bfbb971671ccf69cae5fe8ec8 357 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 33 343 4.1E-107 T 23-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 SUPERFAMILY SSF49299 93 179 1.57E-18 T 23-04-2016 IPR000601 PKD domain THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 SUPERFAMILY SSF49299 44 61 1.57E-18 T 23-04-2016 IPR000601 PKD domain THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 Gene3D G3DSA:2.60.40.10 25 99 1.5E-7 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 Gene3D G3DSA:2.60.40.670 100 183 5.7E-18 T 23-04-2016 IPR000601 PKD domain THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 SMART SM00089 102 176 1.3E-6 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 Pfam PF00801 PKD domain 113 169 1.9E-5 T 23-04-2016 IPR000601 PKD domain THIMO_RS14665 f993239d7baa0aa18478b25391851b45 730 SUPERFAMILY SSF49265 25 95 2.58E-8 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 Gene3D G3DSA:1.10.10.10 9 70 4.5E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 TIGRFAM TIGR00498 lexA: repressor LexA 10 210 5.1E-47 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 Pfam PF01726 LexA DNA binding domain 11 66 6.6E-11 T 23-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 SUPERFAMILY SSF51306 88 207 7.67E-31 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 Pfam PF00717 Peptidase S24-like 128 194 1.2E-14 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 Gene3D G3DSA:2.10.109.10 89 209 2.4E-36 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 PANTHER PTHR33516 3 212 8.4E-58 T 23-04-2016 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 SUPERFAMILY SSF46785 10 71 3.71E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 PANTHER PTHR33516:SF2 3 212 8.4E-58 T 23-04-2016 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 135 1.2E-8 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 136 147 1.2E-8 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 THIMO_RS07745 5043b1d82cd7c670f4e6ba7d43ec628c 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 164 176 1.2E-8 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 SMART SM00226 7 156 7.5E-53 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PANTHER PTHR11717 1 158 3.7E-57 T 23-04-2016 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 154 2.0E-39 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 128 143 1.8E-27 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 9 26 1.8E-27 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 52 68 1.8E-27 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 86 101 1.8E-27 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 109 122 1.8E-27 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 SUPERFAMILY SSF52788 6 157 1.26E-52 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 Gene3D G3DSA:3.40.50.270 5 160 3.3E-54 T 23-04-2016 THIMO_RS02500 ed42f1c5345eb48a2d110fb0db69fe1d 167 PANTHER PTHR11717:SF7 1 158 3.7E-57 T 23-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 THIMO_RS07495 d1552be1de972caa1f3706e1dd09efe4 371 PANTHER PTHR24421:SF16 2 195 3.8E-36 T 23-04-2016 THIMO_RS07495 d1552be1de972caa1f3706e1dd09efe4 371 PANTHER PTHR24421 2 195 3.8E-36 T 23-04-2016 THIMO_RS07495 d1552be1de972caa1f3706e1dd09efe4 371 PIRSF PIRSF036461 1 329 6.1E-83 T 23-04-2016 IPR011247 Chemotaxis protein-glutamate methylesterase THIMO_RS07495 d1552be1de972caa1f3706e1dd09efe4 371 Pfam PF01339 CheB methylesterase 1 173 1.6E-49 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS07495 d1552be1de972caa1f3706e1dd09efe4 371 Gene3D G3DSA:3.40.50.180 1 179 1.3E-56 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS07495 d1552be1de972caa1f3706e1dd09efe4 371 SUPERFAMILY SSF52738 1 179 1.7E-51 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 Hamap MF_00323 Ferrochelatase [hemH]. 15 336 37.465 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 ProSitePatterns PS00534 Ferrochelatase signature. 205 223 - T 23-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 Gene3D G3DSA:3.40.50.1400 217 335 3.4E-34 T 23-04-2016 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 Gene3D G3DSA:3.40.50.1400 17 216 3.0E-71 T 23-04-2016 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 PANTHER PTHR11108 16 335 1.6E-126 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 TIGRFAM TIGR00109 hemH: ferrochelatase 15 335 7.2E-102 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 Pfam PF00762 Ferrochelatase 18 335 1.3E-114 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 THIMO_RS08795 a11d3d5efd9b379e7b14f775ca41a0f1 355 SUPERFAMILY SSF53800 17 343 1.08E-109 T 23-04-2016 THIMO_RS03245 3c4cb7d049e197c159cb22a0497a600e 412 Pfam PF13482 RNase_H superfamily 114 281 3.1E-30 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03245 3c4cb7d049e197c159cb22a0497a600e 412 PANTHER PTHR38462 70 309 2.4E-34 T 23-04-2016 THIMO_RS03245 3c4cb7d049e197c159cb22a0497a600e 412 Gene3D G3DSA:3.30.420.10 114 283 2.9E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03245 3c4cb7d049e197c159cb22a0497a600e 412 SUPERFAMILY SSF53098 113 284 4.4E-21 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS02140 fa2ad4312bbac0771d8ee73a1dc85413 168 Pfam PF07603 Protein of unknown function (DUF1566) 42 165 1.1E-30 T 23-04-2016 IPR011460 Protein of unknown function DUF1566 THIMO_RS02140 fa2ad4312bbac0771d8ee73a1dc85413 168 PANTHER PTHR35812 1 168 6.8E-13 T 23-04-2016 THIMO_RS01785 620a8bf6b62373db3d6d19107d1e115d 248 SUPERFAMILY SSF53955 113 235 2.25E-16 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS01785 620a8bf6b62373db3d6d19107d1e115d 248 Pfam PF00182 Chitinase class I 155 188 3.1E-6 T 23-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 THIMO_RS01785 620a8bf6b62373db3d6d19107d1e115d 248 Gene3D G3DSA:3.30.20.10 154 187 5.3E-11 T 23-04-2016 THIMO_RS05905 28e74be751125e9b13c8084cd408f462 74 Pfam PF11752 Protein of unknown function (DUF3309) 27 73 2.6E-17 T 23-04-2016 IPR021738 Protein of unknown function DUF3309 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 PANTHER PTHR11680 7 416 6.1E-300 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 SUPERFAMILY SSF53383 7 416 7.23E-182 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.267 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 Gene3D G3DSA:3.90.1150.10 286 417 3.2E-50 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 PANTHER PTHR11680:SF9 7 416 6.1E-300 T 23-04-2016 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 PIRSF PIRSF000412 1 418 1.6E-164 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 Pfam PF00464 Serine hydroxymethyltransferase 9 386 4.7E-178 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 THIMO_RS01655 bbac1dfea018c29bdde0639f5d74ae92 419 Gene3D G3DSA:3.40.640.10 37 285 2.0E-109 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS02685 1d39111f1ee4161afbde7140ea39111e 393 SUPERFAMILY SSF53335 27 384 8.2E-82 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02685 1d39111f1ee4161afbde7140ea39111e 393 Gene3D G3DSA:3.40.50.150 84 183 5.5E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02685 1d39111f1ee4161afbde7140ea39111e 393 Gene3D G3DSA:3.40.50.150 246 256 5.5E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02685 1d39111f1ee4161afbde7140ea39111e 393 PANTHER PTHR12049 6 390 3.0E-61 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA THIMO_RS02685 1d39111f1ee4161afbde7140ea39111e 393 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 84 324 1.3E-45 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 3 18 2.9E-34 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 60 72 2.9E-34 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 81 94 2.9E-34 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 25 46 2.9E-34 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 SMART SM00883 2 94 5.4E-61 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 28.324 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 PANTHER PTHR10772 1 95 1.5E-45 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 8.5E-37 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 Gene3D G3DSA:2.30.33.40 1 95 9.7E-39 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 23-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 THIMO_RS00850 6d96a8a2affd274a9bfc9efd228cebfd 96 SUPERFAMILY SSF50129 1 95 7.65E-37 T 23-04-2016 IPR011032 GroES-like THIMO_RS09205 7b7adc43df615537ef7b3d229bb9d0b4 171 SUPERFAMILY SSF54637 5 165 1.79E-54 T 23-04-2016 IPR029069 HotDog domain THIMO_RS09205 7b7adc43df615537ef7b3d229bb9d0b4 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 50.58 T 23-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 THIMO_RS09205 7b7adc43df615537ef7b3d229bb9d0b4 171 Gene3D G3DSA:3.10.129.10 5 165 5.2E-56 T 23-04-2016 IPR029069 HotDog domain THIMO_RS09205 7b7adc43df615537ef7b3d229bb9d0b4 171 Pfam PF07977 FabA-like domain 28 158 2.2E-50 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 THIMO_RS09205 7b7adc43df615537ef7b3d229bb9d0b4 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 5 169 2.6E-90 T 23-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 THIMO_RS07395 9cdcab10d1d441a429144d1d87fd4382 485 Pfam PF02386 Cation transport protein 100 472 1.0E-41 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 THIMO_RS07395 9cdcab10d1d441a429144d1d87fd4382 485 PANTHER PTHR32024 11 483 3.5E-90 T 23-04-2016 THIMO_RS00860 baa9db18a4c687b83ddbeebe788959b4 109 Pfam PF03091 CutA1 divalent ion tolerance protein 7 102 5.9E-39 T 23-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 THIMO_RS00860 baa9db18a4c687b83ddbeebe788959b4 109 Gene3D G3DSA:3.30.70.830 2 105 2.3E-43 T 23-04-2016 THIMO_RS00860 baa9db18a4c687b83ddbeebe788959b4 109 PANTHER PTHR23419 7 106 2.9E-47 T 23-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 THIMO_RS00860 baa9db18a4c687b83ddbeebe788959b4 109 SUPERFAMILY SSF54913 2 104 5.19E-40 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS16435 4e948822a02602cdcee57b798c9bfebc 93 PANTHER PTHR40266 1 93 3.4E-41 T 23-04-2016 THIMO_RS16435 4e948822a02602cdcee57b798c9bfebc 93 PANTHER PTHR40266:SF2 1 93 3.4E-41 T 23-04-2016 THIMO_RS16435 4e948822a02602cdcee57b798c9bfebc 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 93 5.2E-20 T 23-04-2016 IPR007711 Toxin HigB-1 THIMO_RS16435 4e948822a02602cdcee57b798c9bfebc 93 SUPERFAMILY SSF143011 13 93 7.32E-16 T 23-04-2016 THIMO_RS02410 728e3ca7c52a3a177b33705aeea24fb3 169 PANTHER PTHR26402 1 117 8.4E-44 T 23-04-2016 THIMO_RS02410 728e3ca7c52a3a177b33705aeea24fb3 169 Pfam PF00072 Response regulator receiver domain 3 114 1.6E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02410 728e3ca7c52a3a177b33705aeea24fb3 169 SMART SM00448 1 114 9.8E-42 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS02410 728e3ca7c52a3a177b33705aeea24fb3 169 Gene3D G3DSA:3.40.50.2300 1 117 8.7E-40 T 23-04-2016 THIMO_RS02410 728e3ca7c52a3a177b33705aeea24fb3 169 SUPERFAMILY SSF52172 1 119 2.56E-40 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS06065 0e18eae0488d820f471ee9d82feb3088 365 Pfam PF03116 NQR2, RnfD, RnfE family 12 346 5.6E-105 T 23-04-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 THIMO_RS06065 0e18eae0488d820f471ee9d82feb3088 365 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 13 347 1.9E-113 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS06065 0e18eae0488d820f471ee9d82feb3088 365 PANTHER PTHR30578:SF0 13 354 3.2E-115 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS06065 0e18eae0488d820f471ee9d82feb3088 365 PANTHER PTHR30578 13 354 3.2E-115 T 23-04-2016 THIMO_RS06065 0e18eae0488d820f471ee9d82feb3088 365 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 7 348 26.626 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS06935 8da2cc2ab310baff17e53b99a7c616da 390 Gene3D G3DSA:3.40.50.2000 211 359 4.2E-19 T 23-04-2016 THIMO_RS06935 8da2cc2ab310baff17e53b99a7c616da 390 Pfam PF13439 Glycosyltransferase Family 4 40 189 8.4E-13 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS06935 8da2cc2ab310baff17e53b99a7c616da 390 Pfam PF00534 Glycosyl transferases group 1 213 322 3.8E-18 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS06935 8da2cc2ab310baff17e53b99a7c616da 390 PANTHER PTHR12526 27 374 1.0E-31 T 23-04-2016 THIMO_RS06935 8da2cc2ab310baff17e53b99a7c616da 390 SUPERFAMILY SSF53756 28 375 8.97E-49 T 23-04-2016 THIMO_RS17770 8b861ca40c99de5ada92847adf522219 131 SUPERFAMILY SSF53807 29 122 5.89E-24 T 23-04-2016 THIMO_RS17770 8b861ca40c99de5ada92847adf522219 131 Gene3D G3DSA:3.40.50.1980 24 124 2.7E-23 T 23-04-2016 THIMO_RS17770 8b861ca40c99de5ada92847adf522219 131 PANTHER PTHR30477 9 119 8.5E-18 T 23-04-2016 THIMO_RS17770 8b861ca40c99de5ada92847adf522219 131 PANTHER PTHR30477:SF1 9 119 8.5E-18 T 23-04-2016 THIMO_RS17770 8b861ca40c99de5ada92847adf522219 131 Pfam PF01297 Zinc-uptake complex component A periplasmic 32 113 4.3E-17 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 THIMO_RS17310 6ed0c7cf1611a3c36511aa34975755be 157 PIRSF PIRSF005788 1 157 1.3E-58 T 23-04-2016 IPR004952 Uncharacterised protein family UPF0460 THIMO_RS17310 6ed0c7cf1611a3c36511aa34975755be 157 Pfam PF03270 Protein of unknown function, DUF269 38 155 2.0E-45 T 23-04-2016 IPR004952 Uncharacterised protein family UPF0460 THIMO_RS17310 6ed0c7cf1611a3c36511aa34975755be 157 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 16 155 5.4E-53 T 23-04-2016 IPR004952 Uncharacterised protein family UPF0460 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Pfam PF08279 HTH domain 12 61 5.9E-11 T 23-04-2016 IPR013196 Helix-turn-helix, type 11 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Pfam PF03099 Biotin/lipoate A/B protein ligase family 96 217 1.7E-12 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 9 332 31.071 T 23-04-2016 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Gene3D G3DSA:3.30.930.10 87 282 6.6E-51 T 23-04-2016 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 PANTHER PTHR12835 10 332 2.0E-65 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Gene3D G3DSA:2.30.30.100 287 333 7.6E-13 T 23-04-2016 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 SUPERFAMILY SSF46785 6 63 9.37E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 89 332 2.9E-48 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Gene3D G3DSA:1.10.10.10 9 65 4.3E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 SUPERFAMILY SSF55681 89 282 2.32E-50 T 23-04-2016 THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 SUPERFAMILY SSF50037 287 332 7.78E-8 T 23-04-2016 IPR008988 Transcriptional repressor, C-terminal THIMO_RS00505 cba68ba68fcebdd127ea56f3b76916fd 336 Pfam PF02237 Biotin protein ligase C terminal domain 288 332 2.8E-5 T 23-04-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15 THIMO_RS09980 7114512aedb3f4dbc2b01498b37db7d0 211 PANTHER PTHR18901 1 210 2.8E-72 T 23-04-2016 THIMO_RS09980 7114512aedb3f4dbc2b01498b37db7d0 211 PANTHER PTHR18901:SF7 1 210 2.8E-72 T 23-04-2016 THIMO_RS09980 7114512aedb3f4dbc2b01498b37db7d0 211 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 172 3.3E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS09980 7114512aedb3f4dbc2b01498b37db7d0 211 SUPERFAMILY SSF56784 1 201 5.76E-34 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS09980 7114512aedb3f4dbc2b01498b37db7d0 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 70 173 8.2E-7 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS09980 7114512aedb3f4dbc2b01498b37db7d0 211 Gene3D G3DSA:3.40.50.1000 1 202 1.9E-19 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 SMART SM00089 156 234 1.4E-13 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 SMART SM00089 73 151 2.7E-16 T 23-04-2016 IPR022409 PKD/Chitinase domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 Pfam PF00801 PKD domain 160 224 8.7E-9 T 23-04-2016 IPR000601 PKD domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 Pfam PF00801 PKD domain 83 141 9.7E-11 T 23-04-2016 IPR000601 PKD domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 PANTHER PTHR13833:SF47 72 232 3.9E-15 T 23-04-2016 THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 Gene3D G3DSA:2.60.40.670 154 236 1.3E-20 T 23-04-2016 IPR000601 PKD domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 Gene3D G3DSA:2.60.40.670 72 153 1.2E-22 T 23-04-2016 IPR000601 PKD domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 SUPERFAMILY SSF49299 58 145 2.88E-22 T 23-04-2016 IPR000601 PKD domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 Gene3D G3DSA:2.60.40.10 5 71 9.2E-5 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 SUPERFAMILY SSF49299 148 233 1.57E-22 T 23-04-2016 IPR000601 PKD domain THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 SUPERFAMILY SSF49265 6 73 2.99E-6 T 23-04-2016 IPR003961 Fibronectin type III GO:0005515 THIMO_RS14695 3c91fd83ee3271267c18191ff02abfeb 542 PANTHER PTHR13833 72 232 3.9E-15 T 23-04-2016 THIMO_RS07705 e7d0e7fd2523496a31660017854d71ab 120 SUPERFAMILY SSF47226 15 114 1.57E-16 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS07705 e7d0e7fd2523496a31660017854d71ab 120 Pfam PF01627 Hpt domain 33 106 1.8E-8 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS07705 e7d0e7fd2523496a31660017854d71ab 120 Gene3D G3DSA:1.20.120.160 11 114 8.6E-18 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 Pfam PF13424 Tetratricopeptide repeat 22 96 1.7E-21 T 23-04-2016 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 PANTHER PTHR19959 1 129 9.6E-38 T 23-04-2016 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 Gene3D G3DSA:1.25.40.10 22 136 8.8E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 PRINTS PR00381 Kinesin light chain signature 98 119 1.02E-9 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 PRINTS PR00381 Kinesin light chain signature 63 83 1.02E-9 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 PRINTS PR00381 Kinesin light chain signature 19 36 1.02E-9 T 23-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 SMART SM00028 65 98 0.0061 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 SMART SM00028 23 56 5.5E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 Pfam PF13374 Tetratricopeptide repeat 106 137 2.6E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS08255 246bb834018825ca05abd4309a27993c 148 SUPERFAMILY SSF48452 21 136 1.38E-25 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 SUPERFAMILY SSF52151 5 123 2.17E-75 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 SUPERFAMILY SSF52151 193 311 2.17E-75 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 5 291 4.0E-103 T 23-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 PANTHER PTHR10982 5 309 2.9E-134 T 23-04-2016 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 Gene3D G3DSA:3.40.366.10 198 293 1.2E-68 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 Gene3D G3DSA:3.40.366.10 5 123 1.2E-68 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 SUPERFAMILY SSF55048 129 198 3.01E-14 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 Pfam PF00698 Acyl transferase domain 7 279 2.1E-41 T 23-04-2016 IPR014043 Acyl transferase THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 PIRSF PIRSF000446 1 312 1.1E-106 T 23-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 Gene3D G3DSA:3.30.70.250 126 197 4.0E-24 T 23-04-2016 THIMO_RS11385 0754a4b37cf2d87830b9686faff9fb4a 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 303 9.9E-39 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain THIMO_RS00980 ecabfb33eb1891721774fec22e113ef5 309 PANTHER PTHR37317:SF1 115 299 4.5E-18 T 23-04-2016 THIMO_RS00980 ecabfb33eb1891721774fec22e113ef5 309 PANTHER PTHR37317 115 299 4.5E-18 T 23-04-2016 THIMO_RS02535 cdf2904eb60e552e5c46a5e5fd01a3f1 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 186 1.4E-10 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS02535 cdf2904eb60e552e5c46a5e5fd01a3f1 229 SUPERFAMILY SSF56784 6 214 5.85E-20 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS02535 cdf2904eb60e552e5c46a5e5fd01a3f1 229 Gene3D G3DSA:3.40.50.1000 77 215 1.3E-15 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS05665 3cce6135125cd207b37306afea72cfd0 129 Pfam PF00380 Ribosomal protein S9/S16 9 129 9.2E-47 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 THIMO_RS05665 3cce6135125cd207b37306afea72cfd0 129 ProSitePatterns PS00360 Ribosomal protein S9 signature. 68 86 - T 23-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 THIMO_RS05665 3cce6135125cd207b37306afea72cfd0 129 Gene3D G3DSA:3.30.230.10 5 129 5.4E-49 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS05665 3cce6135125cd207b37306afea72cfd0 129 SUPERFAMILY SSF54211 5 129 1.21E-45 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS05665 3cce6135125cd207b37306afea72cfd0 129 PANTHER PTHR21569 6 129 1.1E-64 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 THIMO_RS05665 3cce6135125cd207b37306afea72cfd0 129 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 129 28.542 T 23-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid THIMO_RS01920 1837aa0eadb8d1de53e4a8342f7d1812 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 1 130 12.97 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS01920 1837aa0eadb8d1de53e4a8342f7d1812 132 SUPERFAMILY SSF88723 1 128 2.42E-19 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS01920 1837aa0eadb8d1de53e4a8342f7d1812 132 Gene3D G3DSA:3.40.50.1010 1 107 8.4E-7 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS01920 1837aa0eadb8d1de53e4a8342f7d1812 132 Pfam PF01850 PIN domain 1 125 1.0E-19 T 23-04-2016 IPR002716 PIN domain THIMO_RS14985 bbf4e4f858945ee7bdde2252147e8cc3 480 Pfam PF11981 Domain of unknown function (DUF3482) 163 452 2.2E-57 T 23-04-2016 IPR021871 Protein of unknown function DUF3482 THIMO_RS14985 bbf4e4f858945ee7bdde2252147e8cc3 480 SUPERFAMILY SSF52540 6 67 9.88E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14985 bbf4e4f858945ee7bdde2252147e8cc3 480 SUPERFAMILY SSF52540 109 166 9.88E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14985 bbf4e4f858945ee7bdde2252147e8cc3 480 Gene3D G3DSA:3.40.50.300 7 191 3.0E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14985 bbf4e4f858945ee7bdde2252147e8cc3 480 Pfam PF01926 50S ribosome-binding GTPase 10 147 3.3E-13 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 26.717 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 23-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 PANTHER PTHR13501 1 109 1.6E-44 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.7E-43 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 Gene3D G3DSA:3.90.470.10 1 109 1.3E-38 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 SUPERFAMILY SSF54843 1 109 4.32E-39 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13605 8d4036c231c9c84a2852c8ff4ca3df0c 110 Pfam PF00237 Ribosomal protein L22p/L17e 8 107 5.0E-31 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 THIMO_RS06860 6e70ada3656a5b6fe9984ec913bd99f1 402 Pfam PF02687 FtsX-like permease family 281 393 5.8E-22 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS06860 6e70ada3656a5b6fe9984ec913bd99f1 402 Pfam PF12704 MacB-like periplasmic core domain 21 242 7.2E-30 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS06860 6e70ada3656a5b6fe9984ec913bd99f1 402 PANTHER PTHR30572 1 401 1.5E-72 T 23-04-2016 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 Gene3D G3DSA:2.40.50.100 133 196 2.4E-26 T 23-04-2016 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 Gene3D G3DSA:2.40.50.100 201 269 1.0E-26 T 23-04-2016 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 SUPERFAMILY SSF50331 130 197 7.78E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 SUPERFAMILY SSF50331 201 269 1.09E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 PIRSF PIRSF005763 8 270 2.9E-89 T 23-04-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 PANTHER PTHR30432 6 270 7.7E-50 T 23-04-2016 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 201 269 7.8E-21 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 130 196 2.5E-20 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 29 91 4.0E-14 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 Pfam PF03459 TOBE domain 203 266 4.4E-11 T 23-04-2016 IPR005116 Transport-associated OB, type 1 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 Pfam PF03459 TOBE domain 133 194 1.8E-15 T 23-04-2016 IPR005116 Transport-associated OB, type 1 THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 SUPERFAMILY SSF46785 12 116 8.82E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS02935 e8f0116f193f2d48e47041ba5ca5f194 270 Gene3D G3DSA:1.10.10.10 10 132 2.0E-42 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 PANTHER PTHR21712 11 349 2.0E-111 T 23-04-2016 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 Pfam PF02277 Phosphoribosyltransferase 14 348 4.3E-127 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 SUPERFAMILY SSF52733 7 349 3.66E-115 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 Gene3D G3DSA:3.40.50.10210 74 331 6.7E-103 T 23-04-2016 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 Gene3D G3DSA:1.10.1610.10 11 73 5.5E-31 T 23-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 16 348 1.8E-129 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 PANTHER PTHR21712:SF4 11 349 2.0E-111 T 23-04-2016 THIMO_RS16205 c69e62a7affaef79e6601a5854fd47e4 352 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 14 350 36.736 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 THIMO_RS02415 89f8d1b5bbdf51acb99831eeeb21f280 361 Gene3D G3DSA:3.90.1200.10 120 340 1.1E-28 T 23-04-2016 THIMO_RS02415 89f8d1b5bbdf51acb99831eeeb21f280 361 Pfam PF01636 Phosphotransferase enzyme family 26 280 7.0E-30 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase THIMO_RS02415 89f8d1b5bbdf51acb99831eeeb21f280 361 SUPERFAMILY SSF56112 4 342 4.69E-46 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS08345 fd448166af51b2b691b73621b4e7c0c9 414 Pfam PF13203 Putative metallopeptidase domain 6 282 2.8E-46 T 23-04-2016 IPR025154 Putative metallopeptidase domain THIMO_RS08345 fd448166af51b2b691b73621b4e7c0c9 414 PANTHER PTHR38730:SF1 1 411 2.1E-50 T 23-04-2016 THIMO_RS08345 fd448166af51b2b691b73621b4e7c0c9 414 Pfam PF09967 VWA-like domain (DUF2201) 289 413 4.4E-26 T 23-04-2016 IPR018698 VWA-like domain THIMO_RS08345 fd448166af51b2b691b73621b4e7c0c9 414 PANTHER PTHR38730 1 411 2.1E-50 T 23-04-2016 THIMO_RS08345 fd448166af51b2b691b73621b4e7c0c9 414 SUPERFAMILY SSF53300 288 393 1.11E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS12905 bc97a027c1a1c9f52bb4ee27406126d9 381 Gene3D G3DSA:3.40.1030.10 99 379 5.1E-25 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS12905 bc97a027c1a1c9f52bb4ee27406126d9 381 Gene3D G3DSA:1.20.970.10 26 92 3.8E-14 T 23-04-2016 THIMO_RS12905 bc97a027c1a1c9f52bb4ee27406126d9 381 SUPERFAMILY SSF47648 23 91 1.57E-12 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain THIMO_RS12905 bc97a027c1a1c9f52bb4ee27406126d9 381 SUPERFAMILY SSF52418 99 380 2.75E-37 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS12905 bc97a027c1a1c9f52bb4ee27406126d9 381 Pfam PF02885 Glycosyl transferase family, helical bundle domain 25 88 7.7E-13 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain THIMO_RS12905 bc97a027c1a1c9f52bb4ee27406126d9 381 Pfam PF00591 Glycosyl transferase family, a/b domain 123 291 2.2E-5 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 THIMO_RS15555 9e598290ba2099e3e5fcca8f36524107 381 PANTHER PTHR30149:SF0 2 377 1.1E-186 T 23-04-2016 THIMO_RS15555 9e598290ba2099e3e5fcca8f36524107 381 PANTHER PTHR30149 2 377 1.1E-186 T 23-04-2016 THIMO_RS15555 9e598290ba2099e3e5fcca8f36524107 381 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 369 1.3E-140 T 23-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 THIMO_RS15555 9e598290ba2099e3e5fcca8f36524107 381 Pfam PF01924 Hydrogenase formation hypA family 12 366 9.4E-149 T 23-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 THIMO_RS15555 9e598290ba2099e3e5fcca8f36524107 381 PIRSF PIRSF005622 1 371 3.5E-151 T 23-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 THIMO_RS09460 a33db72723ab7ba898511bc3d3e2593d 373 Gene3D G3DSA:3.40.50.2000 183 349 8.9E-24 T 23-04-2016 THIMO_RS09460 a33db72723ab7ba898511bc3d3e2593d 373 SUPERFAMILY SSF53756 7 364 5.97E-66 T 23-04-2016 THIMO_RS09460 a33db72723ab7ba898511bc3d3e2593d 373 PANTHER PTHR12526 7 369 1.7E-48 T 23-04-2016 THIMO_RS09460 a33db72723ab7ba898511bc3d3e2593d 373 Pfam PF13439 Glycosyltransferase Family 4 18 178 8.0E-17 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS09460 a33db72723ab7ba898511bc3d3e2593d 373 Pfam PF00534 Glycosyl transferases group 1 195 340 1.9E-29 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS16210 37a0cf02f7eb5f3f2c89552041c16fab 95 Gene3D G3DSA:1.20.120.20 7 83 2.8E-5 T 23-04-2016 THIMO_RS16210 37a0cf02f7eb5f3f2c89552041c16fab 95 SUPERFAMILY SSF58113 8 88 1.28E-5 T 23-04-2016 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 SMART SM00977 362 430 2.6E-19 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 Pfam PF01171 PP-loop family 24 200 1.1E-50 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 Pfam PF11734 TilS substrate C-terminal domain 362 421 1.4E-19 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 PANTHER PTHR11807:SF2 20 416 2.5E-74 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 SUPERFAMILY SSF52402 21 231 1.48E-59 T 23-04-2016 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 363 408 5.1E-13 T 23-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 PANTHER PTHR11807 20 416 2.5E-74 T 23-04-2016 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 SUPERFAMILY SSF82829 237 319 1.15E-20 T 23-04-2016 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 Pfam PF09179 TilS substrate binding domain 248 314 1.4E-19 T 23-04-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 SUPERFAMILY SSF56037 326 422 1.75E-21 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 13 307 22.532 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 23 203 9.7E-49 T 23-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 THIMO_RS04455 6839dad396837a32f759e26d8ed3f39d 451 Gene3D G3DSA:3.40.50.620 23 180 1.3E-11 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS13150 6c3729dd16878577a1eaef37fd5b4a73 193 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 183 1.1E-40 T 23-04-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 THIMO_RS13150 6c3729dd16878577a1eaef37fd5b4a73 193 PANTHER PTHR37481:SF1 1 191 7.2E-24 T 23-04-2016 THIMO_RS13150 6c3729dd16878577a1eaef37fd5b4a73 193 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 9 183 2.1E-35 T 23-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related THIMO_RS13150 6c3729dd16878577a1eaef37fd5b4a73 193 PANTHER PTHR37481 1 191 7.2E-24 T 23-04-2016 THIMO_RS01485 e3ba8d95b6dbe83f18fdd20f4189079c 134 Gene3D G3DSA:3.40.50.1010 2 124 3.6E-8 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS01485 e3ba8d95b6dbe83f18fdd20f4189079c 134 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 1 124 9.832 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS01485 e3ba8d95b6dbe83f18fdd20f4189079c 134 SUPERFAMILY SSF88723 2 124 3.08E-14 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS01485 e3ba8d95b6dbe83f18fdd20f4189079c 134 Pfam PF01850 PIN domain 1 116 4.0E-10 T 23-04-2016 IPR002716 PIN domain THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 PANTHER PTHR11751:SF314 88 470 1.5E-136 T 23-04-2016 THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 PANTHER PTHR11751 88 470 1.5E-136 T 23-04-2016 THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 SMART SM00345 9 68 1.8E-16 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 Gene3D G3DSA:3.40.640.10 141 360 1.7E-63 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 SUPERFAMILY SSF53383 100 467 6.33E-86 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 SUPERFAMILY SSF46785 5 76 5.58E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 Gene3D G3DSA:1.10.10.10 5 76 2.1E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 Pfam PF00155 Aminotransferase class I and II 141 450 1.4E-26 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS09690 1d2ac48a3f5d27f547d5b4fb2021311a 475 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 8.2E-15 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 THIMO_RS09440 08b10af84723b7dd5b0ea8b6c1483679 291 PANTHER PTHR23088:SF11 1 288 3.8E-136 T 23-04-2016 THIMO_RS09440 08b10af84723b7dd5b0ea8b6c1483679 291 Pfam PF00795 Carbon-nitrogen hydrolase 3 269 3.6E-55 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS09440 08b10af84723b7dd5b0ea8b6c1483679 291 PANTHER PTHR23088 1 288 3.8E-136 T 23-04-2016 THIMO_RS09440 08b10af84723b7dd5b0ea8b6c1483679 291 Gene3D G3DSA:3.60.110.10 1 286 1.5E-100 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS09440 08b10af84723b7dd5b0ea8b6c1483679 291 SUPERFAMILY SSF56317 2 286 2.75E-86 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 PIRSF PIRSF000164 1 312 3.9E-74 T 23-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 SUPERFAMILY SSF51395 5 311 7.33E-78 T 23-04-2016 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 10 311 36.266 T 23-04-2016 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 10 309 3.5E-97 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 249 269 - T 23-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 Gene3D G3DSA:3.20.20.70 5 310 4.7E-84 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 PANTHER PTHR11938 47 309 3.0E-48 T 23-04-2016 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 PANTHER PTHR11938:SF5 47 309 3.0E-48 T 23-04-2016 THIMO_RS17465 ee30bd5169c8b60040fb97e48449355a 314 Pfam PF01180 Dihydroorotate dehydrogenase 10 294 1.7E-65 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 PIRSF PIRSF000728 13 297 1.6E-105 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 272 8.6E-76 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 1.8E-8 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 1.8E-8 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 PRINTS PR00474 Glutamate 5-kinase family signature 59 73 1.8E-8 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 Pfam PF00696 Amino acid kinase family 28 273 6.3E-45 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 Gene3D G3DSA:3.40.1160.10 26 296 1.3E-102 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 PANTHER PTHR23342 13 298 4.5E-113 T 23-04-2016 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 Hamap MF_00082_B Acetylglutamate kinase [argB]. 26 297 36.346 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 PANTHER PTHR23342:SF2 13 298 4.5E-113 T 23-04-2016 THIMO_RS03560 3ace07b2f78546806a0455305028f93d 298 SUPERFAMILY SSF53633 8 297 1.24E-93 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 306 37.85 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 Pfam PF00551 Formyl transferase 5 182 4.5E-45 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 302 1.5E-93 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 SUPERFAMILY SSF50486 207 305 1.57E-33 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 PANTHER PTHR11138 5 303 2.0E-119 T 23-04-2016 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 Gene3D G3DSA:3.40.50.170 4 207 6.9E-76 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 SUPERFAMILY SSF53328 5 209 2.09E-69 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 Gene3D G3DSA:3.10.25.10 209 307 3.1E-35 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS05955 9079151f92a438eb923b985786bf5f81 311 Pfam PF02911 Formyl transferase, C-terminal domain 206 302 4.2E-29 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 Gene3D G3DSA:3.40.50.920 177 306 1.9E-25 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 SUPERFAMILY SSF52518 10 167 2.91E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 Pfam PF02779 Transketolase, pyrimidine binding domain 12 165 8.0E-24 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 Gene3D G3DSA:3.40.50.970 12 176 4.1E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 Pfam PF02780 Transketolase, C-terminal domain 178 297 1.3E-16 T 23-04-2016 IPR033248 Transketolase, C-terminal domain THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 PANTHER PTHR11624 12 319 4.2E-72 T 23-04-2016 IPR033247 Transketolase family THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 PANTHER PTHR11624:SF2 12 319 4.2E-72 T 23-04-2016 THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 SUPERFAMILY SSF52922 177 306 2.75E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS03690 120fbb2dea81c10b9f1fe08a3b480870 335 SMART SM00861 2 166 5.2E-29 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS08705 7dc5348aaa6f51d5bd36270a3c3ca0f5 201 PANTHER PTHR30007:SF0 135 198 9.1E-27 T 23-04-2016 THIMO_RS08705 7dc5348aaa6f51d5bd36270a3c3ca0f5 201 PANTHER PTHR30007:SF0 1 114 9.1E-27 T 23-04-2016 THIMO_RS08705 7dc5348aaa6f51d5bd36270a3c3ca0f5 201 Pfam PF01609 Transposase DDE domain 20 172 3.7E-6 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS08705 7dc5348aaa6f51d5bd36270a3c3ca0f5 201 PANTHER PTHR30007 135 198 9.1E-27 T 23-04-2016 THIMO_RS08705 7dc5348aaa6f51d5bd36270a3c3ca0f5 201 PANTHER PTHR30007 1 114 9.1E-27 T 23-04-2016 THIMO_RS01250 aa8f98b2ccff480effc69a7b1b407e29 162 SUPERFAMILY SSF47240 6 153 9.82E-18 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS01250 aa8f98b2ccff480effc69a7b1b407e29 162 PANTHER PTHR33531 1 150 4.3E-16 T 23-04-2016 THIMO_RS01250 aa8f98b2ccff480effc69a7b1b407e29 162 PANTHER PTHR33531:SF1 1 150 4.3E-16 T 23-04-2016 THIMO_RS01250 aa8f98b2ccff480effc69a7b1b407e29 162 Gene3D G3DSA:1.20.1260.10 4 154 1.2E-32 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PANTHER PTHR10366 257 335 1.5E-175 T 23-04-2016 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PANTHER PTHR10366 2 239 1.5E-175 T 23-04-2016 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 4.7E-31 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 4.7E-31 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 4.7E-31 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 4.7E-31 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 238 3.1E-53 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 SUPERFAMILY SSF51735 1 333 1.08E-88 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PANTHER PTHR10366:SF77 257 335 1.5E-175 T 23-04-2016 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PANTHER PTHR10366:SF77 2 239 1.5E-175 T 23-04-2016 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 Gene3D G3DSA:3.40.50.720 1 196 2.3E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 Gene3D G3DSA:3.90.25.10 296 332 2.0E-20 T 23-04-2016 THIMO_RS17095 91feb4de1ab1dc9b2a2b1a266b82afcf 335 Gene3D G3DSA:3.90.25.10 197 231 2.0E-20 T 23-04-2016 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 PANTHER PTHR11236:SF9 1 487 5.5E-231 T 23-04-2016 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 SUPERFAMILY SSF56322 14 483 7.98E-160 T 23-04-2016 IPR005801 ADC synthase GO:0009058 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 Pfam PF00425 chorismate binding enzyme 221 474 8.4E-96 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 482 3.7E-168 T 23-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 Gene3D G3DSA:3.60.120.10 12 486 2.9E-176 T 23-04-2016 IPR005801 ADC synthase GO:0009058 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 Pfam PF04715 Anthranilate synthase component I, N terminal region 26 169 5.6E-34 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 416 430 1.3E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 336 349 1.3E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 431 445 1.3E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 322 335 1.3E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS17340 0966fdb409793d0c5c5e9edf1cea6d95 497 PANTHER PTHR11236 1 487 5.5E-231 T 23-04-2016 THIMO_RS12125 a3198a3d654bb2314f0ea1141863bfdb 332 PIRSF PIRSF006470 1 331 7.0E-128 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 THIMO_RS12125 a3198a3d654bb2314f0ea1141863bfdb 332 PANTHER PTHR33376 1 331 9.7E-145 T 23-04-2016 THIMO_RS12125 a3198a3d654bb2314f0ea1141863bfdb 332 PANTHER PTHR33376:SF7 1 331 9.7E-145 T 23-04-2016 THIMO_RS12125 a3198a3d654bb2314f0ea1141863bfdb 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 276 2.8E-79 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 THIMO_RS12125 a3198a3d654bb2314f0ea1141863bfdb 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 315 1.4E-98 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 SUPERFAMILY SSF55620 1 114 1.45E-35 T 23-04-2016 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 5.8E-32 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 Pfam PF02152 Dihydroneopterin aldolase 4 113 7.6E-32 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 PANTHER PTHR20941 1 115 1.0E-28 T 23-04-2016 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 8.6E-24 T 23-04-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 SMART SM00905 4 114 3.2E-45 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02665 ff7c833f78527891be58e2c16a466554 118 Gene3D G3DSA:3.30.1130.10 1 114 1.7E-40 T 23-04-2016 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 ProSitePatterns PS00856 Guanylate kinase-like signature. 53 70 - T 23-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 Gene3D G3DSA:3.40.50.300 100 213 3.3E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 Pfam PF00625 Guanylate kinase 21 196 8.0E-51 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 PANTHER PTHR23117 18 211 1.4E-89 T 23-04-2016 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 PANTHER PTHR23117:SF13 18 211 1.4E-89 T 23-04-2016 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 Gene3D G3DSA:3.30.63.10 64 99 4.0E-26 T 23-04-2016 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 Gene3D G3DSA:3.40.50.300 13 63 2.7E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 SUPERFAMILY SSF52540 18 202 2.53E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 20 197 3.1E-70 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 Hamap MF_00328 Guanylate kinase [gmk]. 17 200 36.105 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 THIMO_RS03625 180fde1eff4afcca38bc4e4bcc9892c8 223 SMART SM00072 18 200 3.0E-67 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit THIMO_RS14540 1565ba9241e2539d3bd7ee6097ee12e2 468 Pfam PF13727 CoA-binding domain 66 241 4.2E-18 T 23-04-2016 THIMO_RS14540 1565ba9241e2539d3bd7ee6097ee12e2 468 PANTHER PTHR30576:SF0 41 468 3.9E-135 T 23-04-2016 THIMO_RS14540 1565ba9241e2539d3bd7ee6097ee12e2 468 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 33 468 7.5E-138 T 23-04-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 THIMO_RS14540 1565ba9241e2539d3bd7ee6097ee12e2 468 PANTHER PTHR30576 41 468 3.9E-135 T 23-04-2016 THIMO_RS14540 1565ba9241e2539d3bd7ee6097ee12e2 468 Pfam PF02397 Bacterial sugar transferase 278 461 1.8E-56 T 23-04-2016 IPR003362 Bacterial sugar transferase THIMO_RS14540 1565ba9241e2539d3bd7ee6097ee12e2 468 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 44 468 4.7E-130 T 23-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase THIMO_RS11570 8c9117552476b77e9d1f14f2c6169ce0 189 Pfam PF11086 Protein of unknown function (DUF2878) 4 158 3.9E-45 T 23-04-2016 IPR021306 Protein of unknown function DUF2878 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 12 273 3.1E-107 T 23-04-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 SUPERFAMILY SSF48150 12 230 9.11E-75 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 ProSitePatterns PS01155 Endonuclease III family signature. 107 136 - T 23-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 40 172 1.1E-19 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 Gene3D G3DSA:3.90.79.10 237 354 2.7E-15 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 Gene3D G3DSA:1.10.340.30 27 127 4.8E-44 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 Gene3D G3DSA:1.10.1670.10 128 228 4.5E-39 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 Pfam PF00633 Helix-hairpin-helix motif 105 132 2.0E-5 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 SUPERFAMILY SSF55811 225 352 1.08E-22 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 PANTHER PTHR10359 14 313 3.0E-90 T 23-04-2016 THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 Pfam PF14815 NUDIX domain 241 350 5.5E-16 T 23-04-2016 IPR029119 MutY, C-terminal THIMO_RS09745 091a5467f726a59f1e978627e3b9030f 371 SMART SM00478 44 195 6.3E-51 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 THIMO_RS09000 dfdd8405a5d27d173887dd48c617bc2a 143 SUPERFAMILY SSF110087 6 143 1.96E-41 T 23-04-2016 IPR007410 DR1885-like metal-binding protein THIMO_RS09000 dfdd8405a5d27d173887dd48c617bc2a 143 Pfam PF04314 Protein of unknown function (DUF461) 32 137 3.7E-35 T 23-04-2016 IPR007410 DR1885-like metal-binding protein THIMO_RS09000 dfdd8405a5d27d173887dd48c617bc2a 143 PANTHER PTHR36302 7 143 2.4E-30 T 23-04-2016 THIMO_RS09000 dfdd8405a5d27d173887dd48c617bc2a 143 PANTHER PTHR36302:SF1 7 143 2.4E-30 T 23-04-2016 THIMO_RS09860 f785ae1382748ac09d1e004834dd1f9b 242 Pfam PF01609 Transposase DDE domain 141 222 1.6E-7 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS09860 f785ae1382748ac09d1e004834dd1f9b 242 PANTHER PTHR33408:SF2 117 212 1.7E-14 T 23-04-2016 THIMO_RS09860 f785ae1382748ac09d1e004834dd1f9b 242 PANTHER PTHR33408 117 212 1.7E-14 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 5.4E-17 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 323 5.4E-17 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 16 38 5.4E-17 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 307 5.4E-17 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 Pfam PF01494 FAD binding domain 15 351 1.9E-27 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 THIMO_RS05715 60549b1d785434deeac1649820042562 421 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 16 402 2.1E-120 T 23-04-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.-|UniPathway: UPA00232 THIMO_RS05715 60549b1d785434deeac1649820042562 421 PANTHER PTHR13789:SF214 11 402 1.3E-131 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 306 319 - T 23-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 THIMO_RS05715 60549b1d785434deeac1649820042562 421 SUPERFAMILY SSF51905 279 396 4.5E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05715 60549b1d785434deeac1649820042562 421 SUPERFAMILY SSF51905 14 189 4.5E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05715 60549b1d785434deeac1649820042562 421 Gene3D G3DSA:3.50.50.60 15 194 3.1E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05715 60549b1d785434deeac1649820042562 421 Gene3D G3DSA:3.50.50.60 280 368 3.1E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS05715 60549b1d785434deeac1649820042562 421 PANTHER PTHR13789 11 402 1.3E-131 T 23-04-2016 THIMO_RS05715 60549b1d785434deeac1649820042562 421 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 16 402 1.6E-120 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 THIMO_RS14030 b5678cc437803e90744f563e3dcdc5ef 554 Pfam PF08936 Carboxysome Shell Carbonic Anhydrase 88 541 5.9E-221 T 23-04-2016 IPR014074 Carboxysome shell carbonic anhydrase THIMO_RS14030 b5678cc437803e90744f563e3dcdc5ef 554 TIGRFAM TIGR02701 shell_carb_anhy: carboxysome shell carbonic anhydrase 88 531 8.8E-191 T 23-04-2016 IPR014074 Carboxysome shell carbonic anhydrase THIMO_RS16935 016ccf5b8fffc68b90faf8bb2c7193bf 493 PANTHER PTHR10067 99 453 4.5E-41 T 23-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 THIMO_RS16935 016ccf5b8fffc68b90faf8bb2c7193bf 493 PANTHER PTHR10067:SF5 99 453 4.5E-41 T 23-04-2016 THIMO_RS16935 016ccf5b8fffc68b90faf8bb2c7193bf 493 Pfam PF02666 Phosphatidylserine decarboxylase 255 457 1.2E-41 T 23-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 THIMO_RS03910 8a421802c9cd9e9e209e4e2a8087e1a6 323 Gene3D G3DSA:3.40.50.1820 98 198 1.2E-5 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS03910 8a421802c9cd9e9e209e4e2a8087e1a6 323 Pfam PF11288 Protein of unknown function (DUF3089) 59 246 5.4E-66 T 23-04-2016 IPR021440 Protein of unknown function DUF3089 THIMO_RS03910 8a421802c9cd9e9e209e4e2a8087e1a6 323 SUPERFAMILY SSF53474 60 216 6.73E-11 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 Pfam PF01625 Peptide methionine sulfoxide reductase 50 202 1.7E-67 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 49 202 9.0E-68 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 PANTHER PTHR10173 1 206 9.4E-114 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 47 208 38.289 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 PANTHER PTHR10173:SF36 1 206 9.4E-114 T 23-04-2016 THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 SUPERFAMILY SSF55068 8 207 1.57E-81 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS05030 7e833ac7c4480998e9db3ae5ac734822 214 Gene3D G3DSA:3.30.1060.10 10 202 8.4E-81 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 SUPERFAMILY SSF53790 7 246 1.96E-43 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 PANTHER PTHR21091:SF127 9 43 6.0E-42 T 23-04-2016 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 PANTHER PTHR21091:SF127 61 216 6.0E-42 T 23-04-2016 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 PIRSF PIRSF036427 8 248 1.0E-67 T 23-04-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 PANTHER PTHR21091 9 43 6.0E-42 T 23-04-2016 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 PANTHER PTHR21091 61 216 6.0E-42 T 23-04-2016 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 220 3.7E-44 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 Gene3D G3DSA:3.40.1010.10 9 140 7.5E-35 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS16890 e54a1e445688b9659bdbbe629ac53196 248 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 9 242 7.5E-70 T 23-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 PIRSF PIRSF003107 9 231 5.6E-51 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 Gene3D G3DSA:1.20.58.220 127 227 1.0E-20 T 23-04-2016 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 PANTHER PTHR10010:SF14 9 233 1.7E-50 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 Pfam PF01895 PhoU domain 26 112 6.9E-17 T 23-04-2016 IPR026022 PhoU domain THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 Pfam PF01895 PhoU domain 133 216 2.1E-11 T 23-04-2016 IPR026022 PhoU domain THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 226 1.7E-53 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 PANTHER PTHR10010 9 233 1.7E-50 T 23-04-2016 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 SUPERFAMILY SSF109755 12 233 3.98E-54 T 23-04-2016 THIMO_RS12080 a9711c150002a7d23ca30706ec278e1f 243 Gene3D G3DSA:1.20.58.220 10 119 9.8E-27 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 SUPERFAMILY SSF81342 16 64 3.36E-36 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 SUPERFAMILY SSF81342 123 275 3.36E-36 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 Gene3D G3DSA:1.20.950.20 17 49 2.3E-48 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 Gene3D G3DSA:1.20.950.20 109 275 2.3E-48 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 PANTHER PTHR30485:SF1 107 270 3.3E-32 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 PANTHER PTHR30485:SF1 1 54 3.3E-32 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 PANTHER PTHR30485 107 270 3.3E-32 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 PANTHER PTHR30485 1 54 3.3E-32 T 23-04-2016 THIMO_RS16930 2930927702f8224e7308b897126a72ec 278 Pfam PF01292 Prokaryotic cytochrome b561 18 269 1.8E-39 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 SMART SM00304 238 290 1.1E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 Pfam PF00672 HAMP domain 222 286 2.3E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 392 494 1.0E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 Gene3D G3DSA:3.30.565.10 338 495 5.1E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 PANTHER PTHR24423 232 495 8.3E-61 T 23-04-2016 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 347 7.0E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 SMART SM00387 388 495 7.4E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 SMART SM00388 291 349 9.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 Gene3D G3DSA:1.10.287.130 281 337 9.4E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 SUPERFAMILY SSF47384 275 348 3.92E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 SUPERFAMILY SSF55874 348 495 7.2E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 PANTHER PTHR24423:SF533 232 495 8.3E-61 T 23-04-2016 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 494 1.5E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 450 1.5E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 475 1.5E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS11280 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 436 1.5E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 4 129 3.3E-52 T 23-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 SUPERFAMILY SSF51230 4 128 2.88E-45 T 23-04-2016 IPR011053 Single hybrid motif THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 32.173 T 23-04-2016 IPR002930 Glycine cleavage system H-protein THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 Gene3D G3DSA:2.40.50.100 7 128 2.5E-51 T 23-04-2016 THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 PANTHER PTHR11715 1 128 9.5E-68 T 23-04-2016 IPR002930 Glycine cleavage system H-protein THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 Pfam PF01597 Glycine cleavage H-protein 8 128 1.1E-47 T 23-04-2016 IPR002930 Glycine cleavage system H-protein THIMO_RS08000 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 PANTHER PTHR12145 4 677 2.8E-243 T 23-04-2016 THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 Gene3D G3DSA:3.40.30.10 22 151 7.5E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 SUPERFAMILY SSF48208 187 557 1.02E-72 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 Pfam PF03190 Protein of unknown function, DUF255 5 167 9.2E-71 T 23-04-2016 IPR004879 Domain of unknown function DUF255 THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 Gene3D G3DSA:1.50.10.10 227 334 3.2E-20 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 Gene3D G3DSA:1.50.10.10 366 540 3.2E-20 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 SUPERFAMILY SSF52833 3 129 1.49E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 PIRSF PIRSF006402 2 678 1.1E-210 T 23-04-2016 IPR024705 Spermatogenesis-associated protein 20 THIMO_RS05005 7ff01b2634c48b259a3f0f81b9c59edd 679 PANTHER PTHR12145:SF11 4 677 2.8E-243 T 23-04-2016 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 PANTHER PTHR24365 80 500 1.1E-47 T 23-04-2016 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.80.10.10 24 293 1.5E-47 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.80.10.10 386 501 1.7E-22 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.40.50.10140 1096 1177 6.9E-7 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52540 542 727 6.98E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF13676 TIR domain 1096 1195 1.7E-10 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.40.50.300 539 722 1.7E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 SMART SM00255 1093 1232 0.0015 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF16095 C-terminal of Roc, COR, domain 758 955 6.1E-19 T 23-04-2016 IPR032171 C-terminal of Roc (COR) domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52058 29 57 2.21E-46 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52058 84 348 2.21E-46 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF12799 Leucine Rich repeats (2 copies) 118 159 3.3E-6 T 23-04-2016 IPR025875 Leucine rich repeat 4 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF12799 Leucine Rich repeats (2 copies) 382 423 3.3E-6 T 23-04-2016 IPR025875 Leucine rich repeat 4 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52058 295 519 4.48E-32 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52200 1093 1193 4.71E-13 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF08477 Ras of Complex, Roc, domain of DAPkinase 544 670 1.8E-21 T 23-04-2016 IPR013684 Mitochondrial Rho-like GO:0005525|GO:0007264 THIMO_RS18225 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.80.10.10 294 385 1.0E-13 T 23-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like THIMO_RS04615 383a405ed05768b3f537baa1df0552a9 290 PANTHER PTHR10657 12 263 1.9E-36 T 23-04-2016 THIMO_RS04615 383a405ed05768b3f537baa1df0552a9 290 SUPERFAMILY SSF54534 136 231 3.07E-29 T 23-04-2016 THIMO_RS04615 383a405ed05768b3f537baa1df0552a9 290 Gene3D G3DSA:3.10.50.40 141 255 1.0E-39 T 23-04-2016 THIMO_RS04615 383a405ed05768b3f537baa1df0552a9 290 PANTHER PTHR10657:SF11 12 263 1.9E-36 T 23-04-2016 THIMO_RS04615 383a405ed05768b3f537baa1df0552a9 290 Pfam PF13145 PPIC-type PPIASE domain 123 245 4.5E-20 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 THIMO_RS04615 383a405ed05768b3f537baa1df0552a9 290 SUPERFAMILY SSF109998 33 170 5.1E-14 T 23-04-2016 IPR027304 Trigger factor/SurA domain THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 PANTHER PTHR12029:SF31 7 158 5.9E-68 T 23-04-2016 THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 Pfam PF00588 SpoU rRNA Methylase family 12 150 3.2E-30 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 10 159 32.628 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 PANTHER PTHR12029 7 158 5.9E-68 T 23-04-2016 THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 PIRSF PIRSF029256 9 161 3.0E-61 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 Gene3D G3DSA:3.40.1280.10 8 161 3.1E-61 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal THIMO_RS17460 7d37074155a67713f023b185c7c832a1 165 SUPERFAMILY SSF75217 11 159 1.57E-42 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 SUPERFAMILY SSF51206 12 152 1.96E-23 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 SUPERFAMILY SSF46785 155 224 3.54E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 175 191 3.1E-5 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 191 206 3.1E-5 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 Gene3D G3DSA:2.60.120.10 12 152 2.3E-23 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 Pfam PF13545 Crp-like helix-turn-helix domain 157 223 1.9E-16 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 SMART SM00419 169 217 1.6E-9 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 Gene3D G3DSA:1.10.10.10 155 223 1.1E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 PANTHER PTHR24567:SF29 17 225 1.1E-40 T 23-04-2016 THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 Pfam PF00027 Cyclic nucleotide-binding domain 37 118 7.3E-8 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS15850 d85cc78b00eab75d6cdda926bbe4e01f 229 PANTHER PTHR24567 17 225 1.1E-40 T 23-04-2016 THIMO_RS14990 e256e96da60fb4fbecba470fbf1a9bbf 571 Pfam PF11067 Protein of unknown function (DUF2868) 201 555 2.0E-98 T 23-04-2016 IPR021296 Protein of unknown function DUF2868 THIMO_RS04000 9f17805e475b294c7a0ae229c5586471 115 PANTHER PTHR19359 29 113 5.8E-14 T 23-04-2016 THIMO_RS04000 9f17805e475b294c7a0ae229c5586471 115 SMART SM01117 37 114 2.3E-15 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain THIMO_RS04000 9f17805e475b294c7a0ae229c5586471 115 SUPERFAMILY SSF55856 34 113 7.59E-21 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain THIMO_RS04000 9f17805e475b294c7a0ae229c5586471 115 Gene3D G3DSA:3.10.120.10 33 114 1.2E-22 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain THIMO_RS04000 9f17805e475b294c7a0ae229c5586471 115 Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain 38 114 4.7E-14 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 35 255 1.0E-91 T 23-04-2016 THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 PANTHER PTHR20919:SF0 2 351 2.0E-89 T 23-04-2016 THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 PANTHER PTHR20919 2 351 2.0E-89 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 Pfam PF04204 Homoserine O-succinyltransferase 2 334 8.8E-86 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 Gene3D G3DSA:3.40.50.880 34 335 1.8E-89 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 SUPERFAMILY SSF52317 302 331 1.58E-64 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS07530 c47ff75ae1740f49f3dd29d88d29f7b9 357 SUPERFAMILY SSF52317 18 273 1.58E-64 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 224 3.3E-27 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 PANTHER PTHR26402:SF576 2 224 2.2E-118 T 23-04-2016 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 PANTHER PTHR26402 2 224 2.2E-118 T 23-04-2016 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 SMART SM00448 2 115 2.1E-48 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 SMART SM00862 149 224 8.6E-28 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 Pfam PF00072 Response regulator receiver domain 4 116 4.4E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 Gene3D G3DSA:1.10.10.10 129 226 2.0E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 Gene3D G3DSA:3.40.50.2300 1 124 1.2E-43 T 23-04-2016 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 2 225 1.4E-103 T 23-04-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 THIMO_RS15695 f4bf89e4335f03cf9c32e1ee4d610a85 227 SUPERFAMILY SSF52172 1 184 4.83E-44 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS11850 6c0e8428079b41f3be5b1296a6a4c6e4 47 Pfam PF08085 Entericidin EcnA/B family 20 40 2.0E-11 T 23-04-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Pfam PF14493 Helix-turn-helix domain 728 815 2.2E-21 T 23-04-2016 IPR029491 Helicase Helix-turn-helix domain THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 SUPERFAMILY SSF47819 627 711 8.5E-15 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 SMART SM00341 626 709 1.8E-11 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:3.40.50.300 21 146 2.3E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Pfam PF00570 HRDC domain 632 699 2.1E-15 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 SUPERFAMILY SSF52540 13 240 5.87E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:1.10.150.80 637 706 6.6E-8 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 SUPERFAMILY SSF52540 135 432 4.07E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Pfam PF02689 Helicase 359 435 1.9E-5 T 23-04-2016 IPR003840 DNA helicase GO:0004386|GO:0005524 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 PANTHER PTHR23274 23 519 1.0E-115 T 23-04-2016 IPR003840 DNA helicase GO:0004386|GO:0005524 THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 SMART SM00382 20 314 5.5E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:3.40.50.300 147 258 1.9E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:3.40.50.300 355 420 1.9E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15345 d5e3c58724c3f71647db58e3705be677 823 Pfam PF05970 PIF1-like helicase 19 213 7.0E-28 T 23-04-2016 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 THIMO_RS01475 6ea030dc7ff45bb3dc2811aa3145e5c8 181 Gene3D G3DSA:3.90.1570.10 8 162 1.5E-42 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS01475 6ea030dc7ff45bb3dc2811aa3145e5c8 181 PANTHER PTHR36558:SF1 3 157 4.9E-23 T 23-04-2016 THIMO_RS01475 6ea030dc7ff45bb3dc2811aa3145e5c8 181 Pfam PF05685 Putative restriction endonuclease 15 163 5.7E-34 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS01475 6ea030dc7ff45bb3dc2811aa3145e5c8 181 SUPERFAMILY SSF52980 8 163 5.9E-38 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS01475 6ea030dc7ff45bb3dc2811aa3145e5c8 181 PANTHER PTHR36558 3 157 4.9E-23 T 23-04-2016 THIMO_RS08630 0fa12b3e58e1f259249ece96650a19dd 144 Pfam PF10116 Protein required for attachment to host cells 4 140 4.0E-40 T 23-04-2016 IPR019291 Host attachment protein THIMO_RS08015 de5947c918fc2c2e64b27a9e3c13fcfa 488 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 1 481 56.75 T 23-04-2016 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 THIMO_RS08015 de5947c918fc2c2e64b27a9e3c13fcfa 488 PANTHER PTHR11773 1 479 5.3E-243 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 THIMO_RS08015 de5947c918fc2c2e64b27a9e3c13fcfa 488 SUPERFAMILY SSF53383 8 480 9.52E-114 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS08015 de5947c918fc2c2e64b27a9e3c13fcfa 488 Pfam PF02347 Glycine cleavage system P-protein 27 368 3.0E-10 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 THIMO_RS08015 de5947c918fc2c2e64b27a9e3c13fcfa 488 Gene3D G3DSA:3.40.640.10 108 279 3.9E-29 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS02365 067935334c6218cef4f057b9582f59b7 306 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 4 286 1.4E-61 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 THIMO_RS02365 067935334c6218cef4f057b9582f59b7 306 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 300 99.384 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 THIMO_RS02365 067935334c6218cef4f057b9582f59b7 306 PANTHER PTHR34308:SF1 1 304 8.6E-97 T 23-04-2016 THIMO_RS02365 067935334c6218cef4f057b9582f59b7 306 Pfam PF03186 CobD/Cbib protein 7 278 5.0E-93 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 THIMO_RS02365 067935334c6218cef4f057b9582f59b7 306 PANTHER PTHR34308 1 304 8.6E-97 T 23-04-2016 THIMO_RS16325 91a6f3da685c0464b09efbfd27077377 293 PANTHER PTHR30193 4 293 2.4E-93 T 23-04-2016 THIMO_RS16325 91a6f3da685c0464b09efbfd27077377 293 SUPERFAMILY SSF161098 56 275 1.19E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS16325 91a6f3da685c0464b09efbfd27077377 293 PANTHER PTHR30193:SF28 4 293 2.4E-93 T 23-04-2016 THIMO_RS16325 91a6f3da685c0464b09efbfd27077377 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 280 1.3E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS16325 91a6f3da685c0464b09efbfd27077377 293 Gene3D G3DSA:1.10.3720.10 4 278 1.4E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 Pfam PF00579 tRNA synthetases class I (W and Y) 235 340 8.2E-9 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 Pfam PF00579 tRNA synthetases class I (W and Y) 1 171 6.5E-48 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PANTHER PTHR10055 233 391 7.6E-154 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PANTHER PTHR10055 1 162 7.6E-154 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 Gene3D G3DSA:3.40.50.620 1 161 3.1E-80 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 Gene3D G3DSA:3.40.50.620 232 263 3.1E-80 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 SUPERFAMILY SSF52374 1 163 5.12E-83 T 23-04-2016 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 SUPERFAMILY SSF52374 234 388 5.12E-83 T 23-04-2016 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 Gene3D G3DSA:1.10.240.10 264 383 1.8E-33 T 23-04-2016 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 7 23 6.7E-20 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 58 77 6.7E-20 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 136 157 6.7E-20 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PANTHER PTHR10055:SF6 233 391 7.6E-154 T 23-04-2016 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 PANTHER PTHR10055:SF6 1 162 7.6E-154 T 23-04-2016 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 168 2.6E-55 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 THIMO_RS04645 615546b39ff79efff2575ef8c230d05c 391 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 3 12 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 PANTHER PTHR33121:SF10 561 813 4.7E-76 T 23-04-2016 THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 SMART SM00052 565 806 9.3E-80 T 23-04-2016 IPR001633 EAL domain THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 Gene3D G3DSA:3.30.70.270 393 556 2.0E-54 T 23-04-2016 THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 PANTHER PTHR33121 561 813 4.7E-76 T 23-04-2016 THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 Pfam PF00563 EAL domain 571 801 6.6E-69 T 23-04-2016 IPR001633 EAL domain THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 Gene3D G3DSA:3.20.20.450 568 810 2.6E-82 T 23-04-2016 IPR001633 EAL domain THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 SUPERFAMILY SSF55073 397 553 1.1E-47 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 390 552 1.1E-44 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 SUPERFAMILY SSF141868 571 810 5.36E-78 T 23-04-2016 IPR001633 EAL domain THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 Pfam PF00990 Diguanylate cyclase, GGDEF domain 392 548 4.9E-47 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS05460 9a9b946dadd0dd528d4e7aab1a9bc786 813 SMART SM00267 381 553 4.1E-60 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS01390 98f60afb94da40f3cca3625f0f6f212f 162 Pfam PF05130 FlgN protein 10 150 7.6E-19 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 THIMO_RS01390 98f60afb94da40f3cca3625f0f6f212f 162 SUPERFAMILY SSF140566 11 133 6.15E-19 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 THIMO_RS01390 98f60afb94da40f3cca3625f0f6f212f 162 Gene3D G3DSA:1.20.58.300 11 133 4.0E-19 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 THIMO_RS10120 a117cafb439b31d0e55830f009abd7e6 151 Pfam PF08896 Domain of unknown function (DUF1842) 34 106 2.2E-4 T 23-04-2016 IPR014992 Domain of unknown function DUF1842 THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 Gene3D G3DSA:3.90.550.10 8 232 5.1E-71 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 SUPERFAMILY SSF53448 7 230 1.6E-57 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 PANTHER PTHR32125:SF4 8 232 4.7E-73 T 23-04-2016 THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 231 8.9E-72 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 228 5.2E-71 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 6 232 31.581 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 23-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS06345 982d84c7fead927f619694d8469a9eba 236 PANTHER PTHR32125 8 232 4.7E-73 T 23-04-2016 THIMO_RS07565 86e27820e61bfb85e599bc00aa70eb1d 314 Pfam PF14397 Sugar-transfer associated ATP-grasp 19 290 1.4E-100 T 23-04-2016 THIMO_RS07565 86e27820e61bfb85e599bc00aa70eb1d 314 SUPERFAMILY SSF56059 219 276 7.74E-19 T 23-04-2016 THIMO_RS07565 86e27820e61bfb85e599bc00aa70eb1d 314 SUPERFAMILY SSF56059 32 186 7.74E-19 T 23-04-2016 THIMO_RS07565 86e27820e61bfb85e599bc00aa70eb1d 314 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 6 296 2.4E-126 T 23-04-2016 IPR011758 Alpha-L-glutamate ligase-related protein THIMO_RS07565 86e27820e61bfb85e599bc00aa70eb1d 314 Gene3D G3DSA:3.30.470.20 232 287 1.3E-4 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 SUPERFAMILY SSF52972 10 200 1.73E-68 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 PANTHER PTHR11067 3 200 8.4E-74 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 PANTHER PTHR11067:SF9 3 200 8.4E-74 T 23-04-2016 THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 10 200 1.6E-54 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 Gene3D G3DSA:3.90.950.10 7 200 1.8E-75 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 Pfam PF01725 Ham1 family 10 198 9.2E-54 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 THIMO_RS03605 7ca71d40824763e1427b51203dc2c68f 205 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 8 202 48.106 T 23-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 Pfam PF04205 FMN-binding domain 106 195 1.8E-20 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 20 199 6.9E-56 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 PIRSF PIRSF006091 9 210 1.2E-66 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 PANTHER PTHR36118:SF1 11 216 1.5E-57 T 23-04-2016 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 12 200 25.717 T 23-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 SMART SM00900 106 198 3.1E-37 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 THIMO_RS06060 9b886b5d0555fde8754ff0cf9741163f 222 PANTHER PTHR36118 11 216 1.5E-57 T 23-04-2016 THIMO_RS17070 f7e62115987152ece8000f717400e9b2 293 Pfam PF04940 Sensors of blue-light using FAD 1 92 4.1E-32 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 THIMO_RS17070 f7e62115987152ece8000f717400e9b2 293 SMART SM01034 1 93 1.1E-47 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 THIMO_RS17070 f7e62115987152ece8000f717400e9b2 293 SUPERFAMILY SSF54975 1 136 8.94E-39 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS17070 f7e62115987152ece8000f717400e9b2 293 Pfam PF06146 Phosphate-starvation-inducible E 210 277 8.5E-19 T 23-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 23-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 SUPERFAMILY SSF52218 1 194 6.29E-63 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 197 31.749 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 Pfam PF03358 NADPH-dependent FMN reductase 11 125 1.2E-8 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 193 1.7E-48 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 Gene3D G3DSA:3.40.50.360 1 196 3.4E-68 T 23-04-2016 IPR029039 Flavoprotein-like domain THIMO_RS07815 d0b1c811068547dbee815bc1c09e60f2 199 PANTHER PTHR30546 1 196 7.8E-75 T 23-04-2016 THIMO_RS00165 41e0f9906cb571587ae048d5faab2f6d 144 TIGRFAM TIGR00028 Mtu_PIN_fam: toxin-antitoxin system PIN domain toxin 2 124 5.2E-28 T 23-04-2016 IPR006226 PIN domain toxin GO:0016788 THIMO_RS00165 41e0f9906cb571587ae048d5faab2f6d 144 SUPERFAMILY SSF88723 3 126 1.18E-13 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS00165 41e0f9906cb571587ae048d5faab2f6d 144 Pfam PF01850 PIN domain 4 127 1.6E-7 T 23-04-2016 IPR002716 PIN domain THIMO_RS00165 41e0f9906cb571587ae048d5faab2f6d 144 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 137 11.856 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS11990 1b9016a4af6debd15ffa2e64148228ac 239 PANTHER PTHR24220:SF578 4 222 1.8E-68 T 23-04-2016 THIMO_RS11990 1b9016a4af6debd15ffa2e64148228ac 239 SUPERFAMILY SSF52540 3 223 4.64E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11990 1b9016a4af6debd15ffa2e64148228ac 239 PANTHER PTHR24220 4 222 1.8E-68 T 23-04-2016 THIMO_RS11990 1b9016a4af6debd15ffa2e64148228ac 239 SMART SM00382 29 226 2.1E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS11990 1b9016a4af6debd15ffa2e64148228ac 239 Pfam PF00005 ABC transporter 24 178 1.0E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS11990 1b9016a4af6debd15ffa2e64148228ac 239 Gene3D G3DSA:3.40.50.300 2 222 1.1E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 SUPERFAMILY SSF52540 15 249 8.11E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 PANTHER PTHR24220 17 254 4.2E-164 T 23-04-2016 THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 SMART SM00382 40 227 1.2E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 PANTHER PTHR24220:SF490 17 254 4.2E-164 T 23-04-2016 THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 Gene3D G3DSA:3.40.50.300 14 251 6.6E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 Pfam PF00005 ABC transporter 31 179 1.3E-38 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS07330 32a87fb7656f6d0e526745deb57a38a6 254 PIRSF PIRSF039085 12 254 4.1E-111 T 23-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 PANTHER PTHR11921 67 494 5.4E-102 T 23-04-2016 THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 Gene3D G3DSA:1.10.1060.10 61 172 1.8E-15 T 23-04-2016 THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 Pfam PF13183 4Fe-4S dicluster domain 73 159 3.8E-9 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 SUPERFAMILY SSF46548 69 172 5.41E-14 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 PANTHER PTHR11921:SF24 67 494 5.4E-102 T 23-04-2016 THIMO_RS00725 555d3586b94e56b7a6481a9fc5873326 512 Pfam PF02754 Cysteine-rich domain 368 467 2.5E-4 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 1.0E-7 T 23-04-2016 THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.5E-21 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 PANTHER PTHR18804 1 37 2.2E-14 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.957 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 Pfam PF00444 Ribosomal protein L36 1 37 3.7E-17 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13525 eee5bf35f7b74c0aef726fcfd2059907 37 SUPERFAMILY SSF57840 1 37 1.23E-15 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 25 441 5.4E-114 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 SMART SM00729 56 277 3.4E-49 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 Gene3D G3DSA:3.80.30.20 57 273 1.5E-30 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 PIRSF PIRSF000167 12 445 4.8E-133 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 PANTHER PTHR13932 26 435 2.7E-135 T 23-04-2016 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 SUPERFAMILY SSF102114 23 434 6.02E-104 T 23-04-2016 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 PANTHER PTHR13932:SF6 26 435 2.7E-135 T 23-04-2016 THIMO_RS13280 668e911a573d5d53e5578f34cfbc9f30 454 Pfam PF04055 Radical SAM superfamily 61 234 8.7E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 SUPERFAMILY SSF46626 473 526 2.78E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 SUPERFAMILY SSF46626 814 833 2.78E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 SUPERFAMILY SSF46626 611 641 2.78E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 Gene3D G3DSA:1.10.760.10 790 833 2.4E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 Gene3D G3DSA:1.10.760.10 618 643 2.4E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 Gene3D G3DSA:1.10.760.10 542 578 2.4E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS16280 daab307cc41bb2b280e90bb9a44e8d1e 833 Gene3D G3DSA:1.10.760.10 450 514 2.6E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS08340 4320d28d1b637c0cd4ffc4f803313b69 348 PANTHER PTHR13779 25 190 5.8E-43 T 23-04-2016 THIMO_RS08340 4320d28d1b637c0cd4ffc4f803313b69 348 PANTHER PTHR13779:SF23 25 190 5.8E-43 T 23-04-2016 THIMO_RS08340 4320d28d1b637c0cd4ffc4f803313b69 348 Pfam PF07728 AAA domain (dynein-related subfamily) 24 120 2.4E-8 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 THIMO_RS08340 4320d28d1b637c0cd4ffc4f803313b69 348 SMART SM00382 21 165 3.6E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS08340 4320d28d1b637c0cd4ffc4f803313b69 348 Gene3D G3DSA:3.40.50.300 12 159 3.8E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08340 4320d28d1b637c0cd4ffc4f803313b69 348 SUPERFAMILY SSF52540 22 160 1.04E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 Gene3D G3DSA:3.40.109.10 122 183 1.4E-16 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 Gene3D G3DSA:3.40.109.10 248 341 1.4E-16 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 SUPERFAMILY SSF55469 11 101 7.33E-12 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 SUPERFAMILY SSF55469 124 178 5.92E-11 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 SUPERFAMILY SSF55469 246 332 5.92E-11 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 Gene3D G3DSA:3.40.109.30 12 101 6.1E-14 T 23-04-2016 THIMO_RS09935 6bd6d8bc160092a723575a9b9b8804ae 344 Pfam PF00881 Nitroreductase family 131 325 4.3E-8 T 23-04-2016 IPR029479 Nitroreductase THIMO_RS14280 c84f23de497aeeada01598f5e923c785 47 SUPERFAMILY SSF56918 4 47 1.75E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14280 c84f23de497aeeada01598f5e923c785 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14280 c84f23de497aeeada01598f5e923c785 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14280 c84f23de497aeeada01598f5e923c785 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.5E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14280 c84f23de497aeeada01598f5e923c785 47 Gene3D G3DSA:1.20.5.250 8 47 9.3E-15 T 23-04-2016 THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 SUPERFAMILY SSF52540 350 511 6.68E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 SUPERFAMILY SSF52540 286 321 6.68E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 SUPERFAMILY SSF52540 2 199 6.68E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 Gene3D G3DSA:3.40.50.300 431 507 6.2E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 Gene3D G3DSA:3.40.50.300 274 302 6.2E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.4E-157 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 Gene3D G3DSA:3.40.50.300 2 205 4.7E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 PIRSF PIRSF003128 1 556 8.9E-159 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 PANTHER PTHR11059 2 554 6.2E-161 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 THIMO_RS12160 42061817aee84675cf7af9737d9dde53 556 Pfam PF02463 RecF/RecN/SMC N terminal domain 13 509 8.1E-20 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 PANTHER PTHR30258:SF2 25 588 3.1E-208 T 23-04-2016 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 408 422 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 71 176 1.4E-16 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 Gene3D G3DSA:3.40.50.300 320 587 1.6E-99 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 SUPERFAMILY SSF52540 197 586 1.06E-102 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 109 586 1.2E-196 T 23-04-2016 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 Pfam PF00437 Type II/IV secretion system protein 216 480 8.2E-83 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 SUPERFAMILY SSF160246 37 172 1.18E-25 T 23-04-2016 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 Gene3D G3DSA:3.30.450.90 191 313 4.1E-51 T 23-04-2016 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 PANTHER PTHR30258 25 588 3.1E-208 T 23-04-2016 THIMO_RS00195 cb7ae17c239eb8bc20218ed9c3f549e7 590 SMART SM00382 341 462 1.3E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 PANTHER PTHR23407:SF1 8 191 8.3E-45 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 8 187 1.2E-35 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 PANTHER PTHR23407 8 191 8.3E-45 T 23-04-2016 THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 Gene3D G3DSA:3.40.50.10420 8 191 1.2E-47 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 8 187 2.0E-43 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 PIRSF PIRSF006806 6 190 2.1E-30 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase THIMO_RS05690 8c3e5d15e08e1a97e68e58cd99c014bf 194 SUPERFAMILY SSF100950 8 191 8.37E-47 T 23-04-2016 THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 PRINTS PR01438 Universal stress protein signature 112 124 4.9E-10 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 PRINTS PR01438 Universal stress protein signature 130 152 4.9E-10 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 PRINTS PR01438 Universal stress protein signature 6 24 4.9E-10 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 Pfam PF00582 Universal stress protein family 6 152 4.6E-22 T 23-04-2016 IPR006016 UspA GO:0006950 THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 PANTHER PTHR31964:SF42 6 152 2.6E-13 T 23-04-2016 THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 PANTHER PTHR31964 6 152 2.6E-13 T 23-04-2016 THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 Gene3D G3DSA:3.40.50.620 6 152 1.2E-23 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 PIRSF PIRSF006276 1 155 1.7E-25 T 23-04-2016 IPR006015 Universal stress protein A THIMO_RS09410 8c049e90b86aca9ec7f895e9e63bab9c 158 SUPERFAMILY SSF52402 6 152 3.43E-24 T 23-04-2016 THIMO_RS04300 43ef2d7fd8455fe2053653db4653f6bf 227 SUPERFAMILY SSF53300 12 189 8.74E-28 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS04300 43ef2d7fd8455fe2053653db4653f6bf 227 Gene3D G3DSA:3.40.50.410 12 191 4.6E-22 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS04300 43ef2d7fd8455fe2053653db4653f6bf 227 SMART SM00327 13 195 1.1E-18 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS04300 43ef2d7fd8455fe2053653db4653f6bf 227 Pfam PF00092 von Willebrand factor type A domain 16 182 3.1E-15 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 344 447 1.6E-13 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.50.50.60 3 125 1.9E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.40.250.10 457 561 6.7E-22 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 SUPERFAMILY SSF51905 2 327 4.46E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 SUPERFAMILY SSF55424 337 460 1.2E-24 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Pfam PF00581 Rhodanese-like domain 469 561 2.7E-9 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 298 1.3E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.50.50.60 126 327 4.9E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.3E-14 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 249 263 2.3E-14 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 2.3E-14 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 2.3E-14 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.30.390.30 349 456 4.0E-29 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.2E-25 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 116 134 6.2E-25 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 6.2E-25 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 6.2E-25 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 264 6.2E-25 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 SMART SM00450 469 567 2.8E-14 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 SUPERFAMILY SSF52821 449 561 1.57E-24 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PANTHER PTHR22912 6 455 1.6E-122 T 23-04-2016 THIMO_RS07580 31f538137f6e36d45144cbd6401e53d8 567 PANTHER PTHR22912:SF140 6 455 1.6E-122 T 23-04-2016 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 109 16.837 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 38 54 1.3E-12 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 73 89 1.3E-12 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 94 107 1.3E-12 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 Pfam PF02049 Flagellar hook-basal body complex protein FliE 30 109 2.8E-28 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 PANTHER PTHR34653 2 109 6.8E-21 T 23-04-2016 THIMO_RS01290 ca07e9d916d723fd892ad1a508f11d30 109 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 35 109 4.2E-20 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 Gene3D G3DSA:2.170.150.20 5 146 4.5E-57 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 7 139 4.4E-60 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 8 131 35.914 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 SUPERFAMILY SSF51316 7 147 2.56E-58 T 23-04-2016 IPR011057 Mss4-like THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 Pfam PF01641 SelR domain 12 130 2.6E-47 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 PANTHER PTHR10173 14 140 1.7E-49 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 THIMO_RS06570 1e0c19d879e4b05f7e4366f66e395057 150 PANTHER PTHR10173:SF18 14 140 1.7E-49 T 23-04-2016 THIMO_RS05860 7492a22f20a573bf33bedf7864f7a948 239 Pfam PF00171 Aldehyde dehydrogenase family 24 213 1.1E-12 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05860 7492a22f20a573bf33bedf7864f7a948 239 Gene3D G3DSA:3.40.605.10 3 214 8.3E-17 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05860 7492a22f20a573bf33bedf7864f7a948 239 SUPERFAMILY SSF53720 2 214 8.25E-19 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 THIMO_RS04625 ad16b5686881309b37953511ed10899f 222 PANTHER PTHR36917:SF1 178 222 1.4E-53 T 23-04-2016 THIMO_RS04625 ad16b5686881309b37953511ed10899f 222 PANTHER PTHR36917:SF1 1 139 1.4E-53 T 23-04-2016 THIMO_RS04625 ad16b5686881309b37953511ed10899f 222 PANTHER PTHR36917 178 222 1.4E-53 T 23-04-2016 THIMO_RS04625 ad16b5686881309b37953511ed10899f 222 PANTHER PTHR36917 1 139 1.4E-53 T 23-04-2016 THIMO_RS04625 ad16b5686881309b37953511ed10899f 222 Pfam PF04279 Intracellular septation protein A 1 213 1.7E-64 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 THIMO_RS04625 ad16b5686881309b37953511ed10899f 222 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 214 18.766 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 SUPERFAMILY SSF52374 3 293 2.04E-113 T 23-04-2016 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:1.10.10.350 361 461 2.7E-28 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 461 33.389 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 SUPERFAMILY SSF48163 297 461 6.41E-38 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 303 1.5E-108 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 459 3.1E-173 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:3.90.800.10 68 178 3.2E-35 T 23-04-2016 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 177 187 1.7E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.7E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 193 201 1.7E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.7E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.7E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PANTHER PTHR11451 3 308 3.3E-100 T 23-04-2016 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:1.10.1160.10 231 311 1.2E-33 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:3.40.50.620 179 228 2.8E-52 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS09950 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:3.40.50.620 2 67 2.8E-52 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS16515 13cb3c98dbf7dd12a94ab9d62d238df8 452 SUPERFAMILY SSF52540 56 213 3.04E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16515 13cb3c98dbf7dd12a94ab9d62d238df8 452 Gene3D G3DSA:3.40.50.300 205 248 8.4E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16515 13cb3c98dbf7dd12a94ab9d62d238df8 452 Gene3D G3DSA:3.40.50.300 64 139 8.4E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS06690 92e5bb408c621f5a16b356da0099ae5a 422 Pfam PF02308 MgtC family 16 141 1.3E-14 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 THIMO_RS06690 92e5bb408c621f5a16b356da0099ae5a 422 PANTHER PTHR39084 13 422 6.2E-54 T 23-04-2016 THIMO_RS06690 92e5bb408c621f5a16b356da0099ae5a 422 Pfam PF13194 Domain of unknown function (DUF4010) 189 398 6.3E-59 T 23-04-2016 IPR025105 Domain of unknown function DUF4010 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Pfam PF01966 HD domain 231 309 2.6E-10 T 23-04-2016 IPR006674 HD domain THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Pfam PF01743 Poly A polymerase head domain 3 122 5.2E-19 T 23-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 PIRSF PIRSF000813 1 407 6.9E-192 T 23-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 41.449 T 23-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Gene3D G3DSA:1.10.3090.10 122 359 3.3E-51 T 23-04-2016 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 PANTHER PTHR13734 1 321 4.0E-64 T 23-04-2016 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 1.2E-9 T 23-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Gene3D G3DSA:3.30.460.10 1 121 9.9E-31 T 23-04-2016 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 SMART SM00471 224 335 8.4E-4 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 SUPERFAMILY SSF81891 120 359 7.46E-51 T 23-04-2016 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 SUPERFAMILY SSF81301 1 119 7.52E-31 T 23-04-2016 THIMO_RS16160 1c1850951609baec171dfacc0aa0d680 411 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.205 T 23-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 Gene3D G3DSA:3.90.79.10 10 178 2.9E-48 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 Pfam PF00293 NUDIX domain 39 170 9.5E-23 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 14 172 1.4E-48 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 PIRSF PIRSF018427 1 188 4.6E-57 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 PANTHER PTHR10885 1 172 6.2E-52 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 SUPERFAMILY SSF55811 12 179 1.19E-42 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 THIMO_RS04225 1611e73a1ef85a132c78e9691ad356a1 189 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 12 185 30.669 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 3.0E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 3.0E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 3.0E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 3.0E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 SMART SM00418 7 85 1.4E-27 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 SUPERFAMILY SSF46785 4 86 6.68E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 PANTHER PTHR33154 8 98 1.0E-24 T 23-04-2016 THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 Gene3D G3DSA:1.10.10.10 5 87 3.7E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09020 bace550c75052696a444c8bbf6990933 117 Pfam PF01022 Bacterial regulatory protein, arsR family 15 59 1.3E-16 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 PANTHER PTHR26402 5 238 4.5E-95 T 23-04-2016 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 Pfam PF00072 Response regulator receiver domain 7 118 5.7E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 SMART SM00448 5 117 1.1E-43 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 Gene3D G3DSA:3.40.50.2300 2 126 3.6E-43 T 23-04-2016 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 Gene3D G3DSA:1.10.10.10 135 237 2.2E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 SMART SM00862 158 234 3.6E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 SUPERFAMILY SSF46894 140 235 4.25E-24 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 234 4.8E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 PANTHER PTHR26402:SF528 5 238 4.5E-95 T 23-04-2016 THIMO_RS11285 3289b9f9e541445485f35dd7d8da80ab 244 SUPERFAMILY SSF52172 3 126 7.68E-43 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS11515 61214a878e5b9e5aa3f0abb60634d109 595 Pfam PF00361 Proton-conducting membrane transporter 89 383 4.8E-50 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS11515 61214a878e5b9e5aa3f0abb60634d109 595 PANTHER PTHR22773:SF49 44 439 4.9E-79 T 23-04-2016 THIMO_RS11515 61214a878e5b9e5aa3f0abb60634d109 595 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 344 370 4.4E-9 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS11515 61214a878e5b9e5aa3f0abb60634d109 595 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 191 215 4.4E-9 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS11515 61214a878e5b9e5aa3f0abb60634d109 595 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 124 148 4.4E-9 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 THIMO_RS11515 61214a878e5b9e5aa3f0abb60634d109 595 PANTHER PTHR22773 44 439 4.9E-79 T 23-04-2016 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 PANTHER PTHR11808 2 394 2.6E-198 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 SUPERFAMILY SSF53383 28 392 1.6E-116 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 391 1.6E-135 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 Gene3D G3DSA:3.40.640.10 8 257 4.4E-91 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 PIRSF PIRSF001434 2 394 4.9E-130 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 10 391 1.9E-169 T 23-04-2016 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 UniPathway: UPA00051 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 PANTHER PTHR11808:SF36 2 394 2.6E-198 T 23-04-2016 THIMO_RS12630 23920f478840d2a91317f1eaae1d75b2 394 Gene3D G3DSA:3.90.1150.10 259 393 5.6E-47 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS14275 eff39bfbcc7862b398592a3c43436238 64 SUPERFAMILY SSF56918 1 45 4.08E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14275 eff39bfbcc7862b398592a3c43436238 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 4.6E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14275 eff39bfbcc7862b398592a3c43436238 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 3.4E-7 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14275 eff39bfbcc7862b398592a3c43436238 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 3.4E-7 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14275 eff39bfbcc7862b398592a3c43436238 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 3.4E-7 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14275 eff39bfbcc7862b398592a3c43436238 64 Gene3D G3DSA:1.20.5.890 1 42 2.3E-19 T 23-04-2016 THIMO_RS00220 19d4b31d0ec2872043dcdfc77bedf7cc 236 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 2 26 1.4E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00220 19d4b31d0ec2872043dcdfc77bedf7cc 236 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 6.7E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00220 19d4b31d0ec2872043dcdfc77bedf7cc 236 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00220 19d4b31d0ec2872043dcdfc77bedf7cc 236 SUPERFAMILY SSF54523 166 225 8.63E-5 T 23-04-2016 THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 36 182 2.5E-52 T 23-04-2016 THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 140 158 - T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 SUPERFAMILY SSF52833 28 182 1.01E-51 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 PIRSF PIRSF000216 12 183 2.0E-59 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 PANTHER PTHR10371 28 183 5.3E-74 T 23-04-2016 THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 36 183 3.5E-56 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 THIMO_RS02810 9f139dd0fe358fd384cf084b33c53053 183 Gene3D G3DSA:3.40.30.10 103 181 1.6E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS10405 822d9722f6f037b2db6bd42acb8299e2 160 Pfam PF00027 Cyclic nucleotide-binding domain 36 120 6.7E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS10405 822d9722f6f037b2db6bd42acb8299e2 160 SMART SM00100 15 132 0.0011 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain THIMO_RS10405 822d9722f6f037b2db6bd42acb8299e2 160 Gene3D G3DSA:2.60.120.10 10 131 1.0E-18 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS10405 822d9722f6f037b2db6bd42acb8299e2 160 SUPERFAMILY SSF51206 9 137 6.02E-20 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 143 260 5.0E-35 T 23-04-2016 IPR014162 Tol-Pal system, YbgF THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 SUPERFAMILY SSF48452 145 250 3.13E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 Pfam PF13525 Outer membrane lipoprotein 143 225 3.7E-13 T 23-04-2016 THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 Gene3D G3DSA:1.25.40.10 145 255 6.3E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 Gene3D G3DSA:1.20.58.60 24 89 5.5E-4 T 23-04-2016 THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 PANTHER PTHR26312:SF74 154 260 4.0E-15 T 23-04-2016 THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 PANTHER PTHR26312 154 260 4.0E-15 T 23-04-2016 THIMO_RS02745 6fa8f2b1038c75e8b6636be74b49f089 268 Pfam PF16331 TolA binding protein trimerisation 24 75 6.4E-10 T 23-04-2016 IPR032519 YbgF, trimerisation domain GO:0070206 THIMO_RS06360 33d7e3a021a703bf0ac6df883d138c6d 181 SUPERFAMILY SSF160443 90 170 3.14E-15 T 23-04-2016 IPR002625 Smr domain THIMO_RS06360 33d7e3a021a703bf0ac6df883d138c6d 181 PANTHER PTHR35562 1 180 2.1E-49 T 23-04-2016 THIMO_RS06360 33d7e3a021a703bf0ac6df883d138c6d 181 PANTHER PTHR35562:SF2 1 180 2.1E-49 T 23-04-2016 THIMO_RS06360 33d7e3a021a703bf0ac6df883d138c6d 181 SMART SM00463 88 170 2.9E-12 T 23-04-2016 IPR002625 Smr domain THIMO_RS06360 33d7e3a021a703bf0ac6df883d138c6d 181 Pfam PF01713 Smr domain 91 170 4.7E-26 T 23-04-2016 IPR002625 Smr domain THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 PANTHER PTHR30126:SF5 3 308 1.0E-119 T 23-04-2016 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-12 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-12 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-12 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 Gene3D G3DSA:3.40.190.10 91 176 1.7E-18 T 23-04-2016 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 SUPERFAMILY SSF53850 92 297 1.09E-49 T 23-04-2016 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 SUPERFAMILY SSF46785 3 80 6.8E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 Pfam PF03466 LysR substrate binding domain 90 294 1.3E-55 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.5E-23 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 Gene3D G3DSA:3.40.190.10 177 264 7.8E-26 T 23-04-2016 THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 Gene3D G3DSA:1.10.10.10 3 88 7.9E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS03670 2e01accea3f991dcfab324385ae530a2 310 PANTHER PTHR30126 3 308 1.0E-119 T 23-04-2016 THIMO_RS16040 f414e4a25ee72372f33c582ae6da0823 445 PANTHER PTHR33121:SF10 179 419 1.9E-15 T 23-04-2016 THIMO_RS16040 f414e4a25ee72372f33c582ae6da0823 445 SMART SM00052 174 424 1.1E-8 T 23-04-2016 IPR001633 EAL domain THIMO_RS16040 f414e4a25ee72372f33c582ae6da0823 445 SUPERFAMILY SSF141868 180 420 1.26E-33 T 23-04-2016 IPR001633 EAL domain THIMO_RS16040 f414e4a25ee72372f33c582ae6da0823 445 Gene3D G3DSA:3.20.20.450 179 420 4.1E-35 T 23-04-2016 IPR001633 EAL domain THIMO_RS16040 f414e4a25ee72372f33c582ae6da0823 445 Pfam PF00563 EAL domain 182 419 3.0E-37 T 23-04-2016 IPR001633 EAL domain THIMO_RS16040 f414e4a25ee72372f33c582ae6da0823 445 PANTHER PTHR33121 179 419 1.9E-15 T 23-04-2016 THIMO_RS11180 3cc54430ccd6c7f8aed714a94f19dbac 856 Pfam PF14403 Circularly permuted ATP-grasp type 2 92 468 2.3E-151 T 23-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 THIMO_RS11180 3cc54430ccd6c7f8aed714a94f19dbac 856 SUPERFAMILY SSF56059 34 230 2.47E-26 T 23-04-2016 THIMO_RS11180 3cc54430ccd6c7f8aed714a94f19dbac 856 SUPERFAMILY SSF56059 337 467 2.47E-26 T 23-04-2016 THIMO_RS11180 3cc54430ccd6c7f8aed714a94f19dbac 856 PANTHER PTHR34595 14 851 7.4E-275 T 23-04-2016 THIMO_RS11180 3cc54430ccd6c7f8aed714a94f19dbac 856 PANTHER PTHR34595:SF1 14 851 7.4E-275 T 23-04-2016 THIMO_RS11180 3cc54430ccd6c7f8aed714a94f19dbac 856 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 518 838 1.8E-74 T 23-04-2016 IPR007296 Domain of unknown function DUF403 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 SUPERFAMILY SSF50475 17 212 1.72E-67 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 PANTHER PTHR10851:SF0 1 212 6.2E-101 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 181 194 - T 23-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 212 39.109 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 PIRSF PIRSF000190 2 212 3.0E-79 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 34 116 8.5E-25 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 6 212 6.4E-83 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 171 212 2.3E-22 T 23-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 PANTHER PTHR10851 1 212 6.2E-101 T 23-04-2016 THIMO_RS13830 2513ae661b9eed42cf33ae617698f2e2 212 Gene3D G3DSA:2.30.110.10 16 212 2.7E-84 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 THIMO_RS08045 ff69f76ace6e92fe06693b8646ac1530 320 Pfam PF03734 L,D-transpeptidase catalytic domain 106 240 2.4E-22 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS08045 ff69f76ace6e92fe06693b8646ac1530 320 Gene3D G3DSA:2.40.440.10 99 241 3.6E-37 T 23-04-2016 THIMO_RS08045 ff69f76ace6e92fe06693b8646ac1530 320 SUPERFAMILY SSF141523 103 240 7.19E-34 T 23-04-2016 THIMO_RS08045 ff69f76ace6e92fe06693b8646ac1530 320 PANTHER PTHR30582:SF1 32 311 5.2E-76 T 23-04-2016 THIMO_RS08045 ff69f76ace6e92fe06693b8646ac1530 320 PANTHER PTHR30582 32 311 5.2E-76 T 23-04-2016 THIMO_RS05650 c0dbff35c214d49e223559772883295d 215 PANTHER PTHR11237:SF3 1 215 4.3E-99 T 23-04-2016 THIMO_RS05650 c0dbff35c214d49e223559772883295d 215 Gene3D G3DSA:1.20.1260.10 46 184 1.3E-10 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS05650 c0dbff35c214d49e223559772883295d 215 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 53 215 7.8E-45 T 23-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 THIMO_RS05650 c0dbff35c214d49e223559772883295d 215 PANTHER PTHR11237 1 215 4.3E-99 T 23-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 THIMO_RS05650 c0dbff35c214d49e223559772883295d 215 SUPERFAMILY SSF47240 48 130 1.07E-16 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS05650 c0dbff35c214d49e223559772883295d 215 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 14 215 30.573 T 23-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 Pfam PF00437 Type II/IV secretion system protein 9 246 1.7E-35 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 PANTHER PTHR30486:SF3 1 375 9.8E-167 T 23-04-2016 THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 Gene3D G3DSA:3.40.50.300 102 344 6.5E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 SUPERFAMILY SSF52540 4 338 3.39E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 344 1.7E-135 T 23-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 SMART SM00382 122 258 3.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS03295 0dac89e23a1443f0134d96391d08f699 380 PANTHER PTHR30486 1 375 9.8E-167 T 23-04-2016 THIMO_RS13055 427ac9790035e61e1bfa9c969f6b2856 310 Pfam PF01758 Sodium Bile acid symporter family 36 213 3.2E-40 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 THIMO_RS13055 427ac9790035e61e1bfa9c969f6b2856 310 PANTHER PTHR10361 4 300 5.0E-98 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SMART SM00091 108 175 0.027 T 23-04-2016 IPR000014 PAS domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SMART SM00091 6 72 6.7E-8 T 23-04-2016 IPR000014 PAS domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SMART SM00267 222 395 4.2E-62 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.30.70.270 235 400 2.3E-51 T 23-04-2016 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF141868 411 659 8.5E-89 T 23-04-2016 IPR001633 EAL domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 229 392 6.6E-38 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF55785 116 219 1.03E-26 T 23-04-2016 IPR000014 PAS domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 PANTHER PTHR10799 121 505 3.1E-80 T 23-04-2016 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF55073 238 395 3.45E-44 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Pfam PF00990 Diguanylate cyclase, GGDEF domain 233 390 6.8E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 64 1.0E-7 T 23-04-2016 IPR000014 PAS domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 105 228 1.1E-17 T 23-04-2016 IPR000014 PAS domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 PANTHER PTHR10799:SF774 121 505 3.1E-80 T 23-04-2016 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF55785 17 108 7.07E-15 T 23-04-2016 IPR000014 PAS domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.30.450.20 97 216 3.1E-29 T 23-04-2016 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SMART SM00052 405 651 1.6E-113 T 23-04-2016 IPR001633 EAL domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.20.20.450 410 658 4.2E-97 T 23-04-2016 IPR001633 EAL domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SMART SM00086 180 222 2.1E-5 T 23-04-2016 IPR001610 PAC motif THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 SMART SM00086 60 100 440.0 T 23-04-2016 IPR001610 PAC motif THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Pfam PF00989 PAS fold 112 219 9.7E-11 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Pfam PF00989 PAS fold 7 57 9.8E-9 T 23-04-2016 IPR013767 PAS fold GO:0006355 THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Pfam PF00563 EAL domain 412 646 3.4E-72 T 23-04-2016 IPR001633 EAL domain THIMO_RS04545 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.30.450.20 8 80 1.7E-11 T 23-04-2016 THIMO_RS00815 7fba89699aadcef8ed7553b03d531a03 284 SUPERFAMILY SSF143422 3 126 2.22E-28 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS00815 7fba89699aadcef8ed7553b03d531a03 284 PANTHER PTHR34322:SF1 2 210 1.1E-37 T 23-04-2016 THIMO_RS00815 7fba89699aadcef8ed7553b03d531a03 284 PANTHER PTHR34322 2 210 1.1E-37 T 23-04-2016 THIMO_RS00815 7fba89699aadcef8ed7553b03d531a03 284 Pfam PF01797 Transposase IS200 like 13 120 8.5E-16 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS00815 7fba89699aadcef8ed7553b03d531a03 284 Gene3D G3DSA:3.30.70.1290 13 126 1.3E-15 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS00815 7fba89699aadcef8ed7553b03d531a03 284 SMART SM01321 9 123 6.1E-42 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 Gene3D G3DSA:3.40.50.300 7 272 5.7E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PANTHER PTHR13696:SF5 1 260 1.4E-148 T 23-04-2016 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 23-04-2016 IPR030655 NifH/chlL conserved site THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 Hamap MF_00533 Nitrogenase iron protein [nifH]. 3 276 52.649 T 23-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PANTHER PTHR13696 1 260 1.4E-148 T 23-04-2016 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PIRSF PIRSF000363 2 278 1.5E-124 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 31 46 8.6E-38 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 9 22 8.6E-38 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 125 140 8.6E-38 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 86 100 8.6E-38 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 ProSitePatterns PS00746 NifH/frxC family signature 1. 88 100 - T 23-04-2016 IPR030655 NifH/chlL conserved site THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 SUPERFAMILY SSF52540 7 275 5.34E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 4 274 1.0E-137 T 23-04-2016 THIMO_RS15435 a7a3675cce37f0af9555559d84dcf91e 293 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 4 276 8.1E-143 T 23-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 THIMO_RS10375 7ab6645849db16ae727b4c99c773c9a6 132 Gene3D G3DSA:3.40.50.2300 3 122 4.2E-25 T 23-04-2016 THIMO_RS10375 7ab6645849db16ae727b4c99c773c9a6 132 PANTHER PTHR26402 3 81 2.7E-21 T 23-04-2016 THIMO_RS10375 7ab6645849db16ae727b4c99c773c9a6 132 SUPERFAMILY SSF52172 3 122 7.83E-24 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS10375 7ab6645849db16ae727b4c99c773c9a6 132 PANTHER PTHR26402:SF50 3 81 2.7E-21 T 23-04-2016 THIMO_RS10375 7ab6645849db16ae727b4c99c773c9a6 132 Pfam PF00072 Response regulator receiver domain 5 116 2.6E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS10375 7ab6645849db16ae727b4c99c773c9a6 132 SMART SM00448 3 117 7.2E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 SMART SM00642 99 556 1.6E-24 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 SUPERFAMILY SSF51445 21 563 1.67E-113 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 Pfam PF00128 Alpha amylase, catalytic domain 108 347 1.7E-41 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:2.60.40.1180 568 649 4.2E-15 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 PANTHER PTHR10357 47 398 1.8E-163 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 PANTHER PTHR10357 440 608 1.8E-163 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 PANTHER PTHR10357:SF122 47 398 1.8E-163 T 23-04-2016 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 PANTHER PTHR10357:SF122 440 608 1.8E-163 T 23-04-2016 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 SUPERFAMILY SSF51011 571 648 1.68E-9 T 23-04-2016 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:3.20.20.80 264 558 2.4E-92 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:3.20.20.80 93 185 2.4E-92 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS12885 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:3.90.400.10 186 256 2.2E-25 T 23-04-2016 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 PANTHER PTHR11228:SF20 1 318 3.2E-121 T 23-04-2016 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 SUPERFAMILY SSF102114 21 317 8.5E-34 T 23-04-2016 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 Pfam PF13353 4Fe-4S single cluster domain 30 114 2.1E-7 T 23-04-2016 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 TIGRFAM TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein 16 320 6.7E-136 T 23-04-2016 IPR026351 Radical SAM/Cys-rich domain protein THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 Pfam PF12345 Protein of unknown function (DUF3641) 182 319 1.1E-54 T 23-04-2016 IPR024521 Domain of unknown function DUF3641 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 PANTHER PTHR11228 1 318 3.2E-121 T 23-04-2016 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 Gene3D G3DSA:3.20.20.70 15 318 8.2E-24 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS04120 ee64e0d9774492bc78c74c9946fafcf6 322 Pfam PF04055 Radical SAM superfamily 28 163 1.7E-9 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 Pfam PF00849 RNA pseudouridylate synthase 93 242 5.7E-34 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 15 312 2.7E-93 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 Pfam PF01479 S4 domain 19 65 5.3E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 PANTHER PTHR11079 10 323 2.6E-137 T 23-04-2016 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 SUPERFAMILY SSF55174 19 69 1.38E-8 T 23-04-2016 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 Gene3D G3DSA:3.10.290.10 20 68 8.7E-9 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 SMART SM00363 19 76 6.1E-4 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 PANTHER PTHR11079:SF73 10 323 2.6E-137 T 23-04-2016 THIMO_RS10480 60f644c491c1558ea97a3888901c25dd 336 SUPERFAMILY SSF55120 77 313 4.32E-77 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS11675 a0cea3f07834ae1459a4517f8df07810 161 Gene3D G3DSA:3.90.960.10 4 159 1.6E-42 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS11675 a0cea3f07834ae1459a4517f8df07810 161 Pfam PF04073 Aminoacyl-tRNA editing domain 36 148 9.7E-24 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS11675 a0cea3f07834ae1459a4517f8df07810 161 PIRSF PIRSF006181 4 161 2.8E-39 T 23-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC THIMO_RS11675 a0cea3f07834ae1459a4517f8df07810 161 SUPERFAMILY SSF55826 9 158 2.88E-36 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS11675 a0cea3f07834ae1459a4517f8df07810 161 PANTHER PTHR30411:SF0 1 160 3.3E-41 T 23-04-2016 THIMO_RS11675 a0cea3f07834ae1459a4517f8df07810 161 PANTHER PTHR30411 1 160 3.3E-41 T 23-04-2016 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 102 596 8.4E-246 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 SUPERFAMILY SSF140990 405 606 6.02E-78 T 23-04-2016 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 323 2.5E-46 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 Pfam PF01434 Peptidase family M41 385 595 5.4E-85 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 Gene3D G3DSA:1.10.8.60 334 399 2.7E-27 T 23-04-2016 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 Gene3D G3DSA:3.40.50.300 148 333 2.5E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 SUPERFAMILY SSF52540 145 394 1.04E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 SMART SM00382 187 326 1.3E-26 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 611 38.264 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 PANTHER PTHR23076 3 640 0.0 T 23-04-2016 THIMO_RS12200 6ededb30824e7563429754fd1e44dbfe 643 Pfam PF06480 FtsH Extracellular 8 85 7.7E-15 T 23-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 THIMO_RS08150 6256ff5dbc241ab9b137b5eae24dbe75 279 PANTHER PTHR31756:SF3 1 267 2.7E-86 T 23-04-2016 THIMO_RS08150 6256ff5dbc241ab9b137b5eae24dbe75 279 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 3 274 67.937 T 23-04-2016 IPR026530 Phosphoenolpyruvate synthase regulatory protein THIMO_RS08150 6256ff5dbc241ab9b137b5eae24dbe75 279 PANTHER PTHR31756 1 267 2.7E-86 T 23-04-2016 THIMO_RS08150 6256ff5dbc241ab9b137b5eae24dbe75 279 Pfam PF03618 Kinase/pyrophosphorylase 6 262 3.2E-72 T 23-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 PANTHER PTHR33910:SF1 1 124 3.7E-25 T 23-04-2016 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 87 107 4.5E-24 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 63 83 4.5E-24 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 107 123 4.5E-24 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 42 63 4.5E-24 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 PANTHER PTHR33910 1 124 3.7E-25 T 23-04-2016 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 Gene3D G3DSA:1.20.5.1030 63 120 2.4E-24 T 23-04-2016 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 68 122 9.2E-18 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 Hamap MF_00422 Protein translocase subunit SecE [secE]. 61 119 12.419 T 23-04-2016 IPR022943 Preprotein translocase subunit SecE THIMO_RS13695 76997edb3a5f3ccf269a5155a8c2af65 125 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 67 120 4.7E-21 T 23-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 285 376 5.7E-20 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 26 256 1.1E-71 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 Gene3D G3DSA:3.40.50.920 278 385 7.4E-18 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 SUPERFAMILY SSF52518 16 265 5.89E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 PANTHER PTHR32154:SF14 17 196 8.7E-123 T 23-04-2016 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 PANTHER PTHR32154:SF14 224 386 8.7E-123 T 23-04-2016 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 Gene3D G3DSA:3.40.50.970 15 200 4.2E-80 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 PANTHER PTHR32154 17 196 8.7E-123 T 23-04-2016 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 PANTHER PTHR32154 224 386 8.7E-123 T 23-04-2016 THIMO_RS01205 4deaa9c9e3075f7b2e3faec78fc26755 388 SUPERFAMILY SSF52922 278 386 1.57E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 SUPERFAMILY SSF54001 277 603 1.26E-58 T 23-04-2016 THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 PANTHER PTHR33490 15 624 1.3E-75 T 23-04-2016 THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 Pfam PF01841 Transglutaminase-like superfamily 356 471 2.5E-21 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 PANTHER PTHR33490:SF4 15 624 1.3E-75 T 23-04-2016 THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 Pfam PF11992 Domain of unknown function (DUF3488) 19 327 5.5E-91 T 23-04-2016 IPR021878 Protein of unknown function DUF3488 THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 Gene3D G3DSA:3.90.260.10 306 596 3.4E-45 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 Pfam PF13559 Domain of unknown function (DUF4129) 584 637 2.7E-7 T 23-04-2016 IPR025403 Domain of unknown function DUF4129 THIMO_RS12875 9f6f36836d1c89d26f3dda67a8232878 658 SMART SM00460 402 473 1.0E-21 T 23-04-2016 IPR002931 Transglutaminase-like THIMO_RS08960 a26c25f62b99f422c615896260342d2e 330 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 223 256 1.9E-4 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 THIMO_RS08960 a26c25f62b99f422c615896260342d2e 330 SUPERFAMILY SSF48695 22 260 1.68E-25 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS08960 a26c25f62b99f422c615896260342d2e 330 Pfam PF14537 Cytochrome c3 87 168 2.5E-6 T 23-04-2016 THIMO_RS08960 a26c25f62b99f422c615896260342d2e 330 Gene3D G3DSA:1.10.3820.10 22 189 6.8E-16 T 23-04-2016 THIMO_RS08960 a26c25f62b99f422c615896260342d2e 330 Gene3D G3DSA:1.10.3820.10 190 256 4.1E-6 T 23-04-2016 THIMO_RS01800 330d5e2bcfef07d34769207cd79da26e 128 SUPERFAMILY SSF51182 15 103 2.47E-21 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS01800 330d5e2bcfef07d34769207cd79da26e 128 Pfam PF07883 Cupin domain 32 100 4.3E-17 T 23-04-2016 IPR013096 Cupin 2, conserved barrel THIMO_RS01800 330d5e2bcfef07d34769207cd79da26e 128 Gene3D G3DSA:2.60.120.10 8 118 8.7E-38 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS15770 b932f1f3c5ced9b1b2b046f68bddc7f9 463 PANTHER PTHR11236 125 461 1.1E-75 T 23-04-2016 THIMO_RS15770 b932f1f3c5ced9b1b2b046f68bddc7f9 463 PANTHER PTHR11236:SF3 125 461 1.1E-75 T 23-04-2016 THIMO_RS15770 b932f1f3c5ced9b1b2b046f68bddc7f9 463 SUPERFAMILY SSF56322 47 461 1.7E-87 T 23-04-2016 IPR005801 ADC synthase GO:0009058 THIMO_RS15770 b932f1f3c5ced9b1b2b046f68bddc7f9 463 Gene3D G3DSA:3.60.120.10 107 462 1.4E-84 T 23-04-2016 IPR005801 ADC synthase GO:0009058 THIMO_RS15770 b932f1f3c5ced9b1b2b046f68bddc7f9 463 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 112 460 1.1E-82 T 23-04-2016 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 THIMO_RS15770 b932f1f3c5ced9b1b2b046f68bddc7f9 463 Pfam PF00425 chorismate binding enzyme 201 452 3.5E-65 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal THIMO_RS13950 22e1d93c26615cf840f2e948eb4fd853 195 Pfam PF14316 Domain of unknown function (DUF4381) 32 177 1.4E-40 T 23-04-2016 IPR025489 Protein of unknown function (DUF4381 THIMO_RS07825 d23d4b67fb9764d0fe04caf511dd9023 446 PANTHER PTHR23519 1 422 5.0E-71 T 23-04-2016 THIMO_RS07825 d23d4b67fb9764d0fe04caf511dd9023 446 Pfam PF11700 Vacuole effluxer Atg22 like 61 138 2.5E-7 T 23-04-2016 IPR024671 Autophagy-related protein 22-like THIMO_RS07825 d23d4b67fb9764d0fe04caf511dd9023 446 Pfam PF11700 Vacuole effluxer Atg22 like 146 434 4.8E-28 T 23-04-2016 IPR024671 Autophagy-related protein 22-like THIMO_RS07825 d23d4b67fb9764d0fe04caf511dd9023 446 Gene3D G3DSA:1.20.1250.20 236 428 5.6E-17 T 23-04-2016 THIMO_RS07825 d23d4b67fb9764d0fe04caf511dd9023 446 Gene3D G3DSA:1.20.1250.20 49 203 1.6E-8 T 23-04-2016 THIMO_RS07825 d23d4b67fb9764d0fe04caf511dd9023 446 SUPERFAMILY SSF103473 13 424 1.96E-35 T 23-04-2016 IPR020846 Major facilitator superfamily domain THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 PANTHER PTHR30570 31 351 6.7E-108 T 23-04-2016 THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 31 350 2.6E-113 T 23-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 PIRSF PIRSF002756 7 351 1.7E-109 T 23-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 SUPERFAMILY SSF53850 31 350 5.86E-90 T 23-04-2016 THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 Pfam PF12849 PBP superfamily domain 30 321 3.1E-60 T 23-04-2016 IPR024370 PBP domain THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 Gene3D G3DSA:3.40.190.10 29 173 6.0E-51 T 23-04-2016 THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 PANTHER PTHR30570:SF0 31 351 6.7E-108 T 23-04-2016 THIMO_RS05505 78da393c5c4cc0dfbd2a5e9ec40fce6a 351 Gene3D G3DSA:3.40.190.10 185 343 6.3E-23 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 Pfam PF13541 Subunit ChlI of Mg-chelatase 355 434 8.7E-7 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 Gene3D G3DSA:3.30.230.10 288 457 2.3E-32 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 Pfam PF13481 AAA domain 82 226 1.4E-14 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 TIGRFAM TIGR00416 sms: DNA repair protein RadA 15 455 1.1E-187 T 23-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 SUPERFAMILY SSF52540 77 296 6.38E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 SMART SM00382 95 248 1.9E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 SUPERFAMILY SSF54211 307 457 1.18E-38 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 SUPERFAMILY SSF54211 259 273 1.18E-38 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 Gene3D G3DSA:3.40.50.300 64 282 2.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PANTHER PTHR32472 16 458 1.5E-197 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 87 115 6.3E-95 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 178 202 6.3E-95 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 217 245 6.3E-95 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 252 278 6.3E-95 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 128 145 6.3E-95 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 326 349 6.3E-95 T 23-04-2016 THIMO_RS07250 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 18 42 6.3E-95 T 23-04-2016 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Gene3D G3DSA:3.40.1190.10 92 312 8.7E-86 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 SUPERFAMILY SSF53244 310 448 3.79E-38 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Gene3D G3DSA:3.40.50.720 1 90 3.1E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 PANTHER PTHR23135 1 439 2.3E-248 T 23-04-2016 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 SUPERFAMILY SSF53623 96 308 2.49E-51 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Gene3D G3DSA:3.90.190.20 313 448 1.6E-32 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 SUPERFAMILY SSF51984 1 90 4.05E-22 T 23-04-2016 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Pfam PF08245 Mur ligase middle domain 108 291 5.3E-20 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 60.3 T 23-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 448 1.4E-217 T 23-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Pfam PF01225 Mur ligase family, catalytic domain 2 99 1.0E-17 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 PANTHER PTHR23135:SF17 1 439 2.3E-248 T 23-04-2016 THIMO_RS00290 6c28d5fe7859859626f84db3ba223363 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 386 1.4E-10 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 PIRSF PIRSF006305 1 193 8.0E-44 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 SUPERFAMILY SSF52972 2 185 1.11E-55 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 30.329 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 7.7E-52 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 PANTHER PTHR11746 117 195 7.5E-27 T 23-04-2016 THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 Pfam PF02545 Maf-like protein 4 186 2.0E-44 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 Gene3D G3DSA:3.90.950.10 2 190 4.6E-57 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like THIMO_RS02530 253dcc88c434af8d9db9d26d5841d047 195 PANTHER PTHR11746:SF102 117 195 7.5E-27 T 23-04-2016 THIMO_RS17240 bb83b4fc0c9cb3367a7515433c047af2 168 PANTHER PTHR12714:SF5 14 168 6.5E-28 T 23-04-2016 THIMO_RS17240 bb83b4fc0c9cb3367a7515433c047af2 168 PANTHER PTHR12714 14 168 6.5E-28 T 23-04-2016 THIMO_RS17240 bb83b4fc0c9cb3367a7515433c047af2 168 Pfam PF04191 Phospholipid methyltransferase 86 149 5.6E-6 T 23-04-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|UniPathway: UPA00753 THIMO_RS10450 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 SUPERFAMILY SSF51730 6 280 1.35E-98 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like THIMO_RS10450 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 Gene3D G3DSA:3.20.20.220 5 281 7.1E-108 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like THIMO_RS10450 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 8 278 1.8E-101 T 23-04-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 THIMO_RS10450 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 PANTHER PTHR21091:SF31 137 272 6.0E-39 T 23-04-2016 THIMO_RS10450 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 Pfam PF02219 Methylenetetrahydrofolate reductase 7 279 1.2E-90 T 23-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 THIMO_RS10450 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 PANTHER PTHR21091 137 272 6.0E-39 T 23-04-2016 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:1.25.50.10 557 877 2.3E-130 T 23-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PANTHER PTHR11533:SF152 4 596 0.0 T 23-04-2016 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PANTHER PTHR11533:SF152 616 877 0.0 T 23-04-2016 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PANTHER PTHR11533 4 596 0.0 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PANTHER PTHR11533 616 877 0.0 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:1.10.390.10 314 457 2.1E-30 T 23-04-2016 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 SUPERFAMILY SSF55486 210 456 1.19E-77 T 23-04-2016 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 877 0.0 T 23-04-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 132 147 2.0E-10 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 2.0E-10 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 2.0E-10 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 2.0E-10 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 2.0E-10 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 Pfam PF01433 Peptidase family M1 52 390 1.8E-66 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 Pfam PF11940 Domain of unknown function (DUF3458) 466 834 1.3E-144 T 23-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal THIMO_RS07930 4c96eea176a11d8ca843cf2d5d247d94 882 SUPERFAMILY SSF63737 4 199 5.49E-44 T 23-04-2016 THIMO_RS16860 8e8b2ba639b17e53987ea1bb75585dda 753 Gene3D G3DSA:3.40.50.1820 617 655 0.001 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS16860 8e8b2ba639b17e53987ea1bb75585dda 753 Gene3D G3DSA:3.40.50.1820 441 522 0.001 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS16860 8e8b2ba639b17e53987ea1bb75585dda 753 SUPERFAMILY SSF52151 7 267 2.88E-23 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS16860 8e8b2ba639b17e53987ea1bb75585dda 753 Pfam PF01734 Patatin-like phospholipase 9 241 6.7E-16 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 THIMO_RS16860 8e8b2ba639b17e53987ea1bb75585dda 753 Gene3D G3DSA:3.40.1090.10 49 246 5.6E-8 T 23-04-2016 THIMO_RS16860 8e8b2ba639b17e53987ea1bb75585dda 753 Pfam PF11856 Protein of unknown function (DUF3376) 517 577 5.3E-8 T 23-04-2016 IPR024282 Domain of unknown function DUF3376 THIMO_RS05285 23fae76e63afc4bc0cde316c7760262b 140 Gene3D G3DSA:2.40.40.10 77 133 7.5E-6 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain THIMO_RS05285 23fae76e63afc4bc0cde316c7760262b 140 Pfam PF03330 Lytic transglycolase 40 129 2.0E-25 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain THIMO_RS05285 23fae76e63afc4bc0cde316c7760262b 140 PANTHER PTHR34183:SF2 38 133 6.1E-47 T 23-04-2016 THIMO_RS05285 23fae76e63afc4bc0cde316c7760262b 140 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 42 134 4.2E-43 T 23-04-2016 IPR012997 Rare lipoprotein A THIMO_RS05285 23fae76e63afc4bc0cde316c7760262b 140 SUPERFAMILY SSF50685 37 132 4.88E-13 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain THIMO_RS05285 23fae76e63afc4bc0cde316c7760262b 140 PANTHER PTHR34183 38 133 6.1E-47 T 23-04-2016 THIMO_RS18055 b19dc64bc7c6cf69dd63d9b84a4faeae 332 PANTHER PTHR34353:SF2 1 286 2.3E-61 T 23-04-2016 THIMO_RS18055 b19dc64bc7c6cf69dd63d9b84a4faeae 332 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 332 17.337 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 THIMO_RS18055 b19dc64bc7c6cf69dd63d9b84a4faeae 332 Pfam PF01867 CRISPR associated protein Cas1 3 286 4.4E-64 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 THIMO_RS18055 b19dc64bc7c6cf69dd63d9b84a4faeae 332 PANTHER PTHR34353 1 286 2.3E-61 T 23-04-2016 THIMO_RS18055 b19dc64bc7c6cf69dd63d9b84a4faeae 332 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 3 288 3.2E-54 T 23-04-2016 IPR002729 CRISPR-associated protein Cas1 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 299 439 1.5E-10 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 PANTHER PTHR10196 22 440 1.5E-89 T 23-04-2016 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 21 129 3.1E-15 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 PIRSF PIRSF000538 18 440 4.7E-49 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 Gene3D G3DSA:3.30.420.40 257 440 3.9E-8 T 23-04-2016 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 SUPERFAMILY SSF53067 21 257 2.83E-37 T 23-04-2016 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 PANTHER PTHR10196:SF9 22 440 1.5E-89 T 23-04-2016 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 SUPERFAMILY SSF53067 259 440 2.38E-16 T 23-04-2016 THIMO_RS17105 43d401328bd54efdecf50aa2dd1cb0ec 441 Gene3D G3DSA:3.30.420.40 19 253 6.7E-32 T 23-04-2016 THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 42 336 3.9E-108 T 23-04-2016 IPR011757 Lytic transglycosylase MltB THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 PANTHER PTHR30163:SF0 41 339 8.2E-126 T 23-04-2016 THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 PANTHER PTHR30163 41 339 8.2E-126 T 23-04-2016 IPR011757 Lytic transglycosylase MltB THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 Pfam PF13406 Transglycosylase SLT domain 40 333 3.1E-94 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 Gene3D G3DSA:1.10.530.10 218 338 4.3E-50 T 23-04-2016 THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 Gene3D G3DSA:1.10.530.10 82 136 4.3E-50 T 23-04-2016 THIMO_RS13235 4eb37f19c615f5798410c648baf6a647 343 SUPERFAMILY SSF53955 39 338 1.61E-83 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS10595 be9f636b608e415b717b027d3efc40e6 584 Gene3D G3DSA:3.90.400.10 99 180 4.2E-22 T 23-04-2016 THIMO_RS10595 be9f636b608e415b717b027d3efc40e6 584 Gene3D G3DSA:3.20.20.80 14 98 1.9E-71 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS10595 be9f636b608e415b717b027d3efc40e6 584 Gene3D G3DSA:3.20.20.80 259 526 1.9E-71 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 THIMO_RS10595 be9f636b608e415b717b027d3efc40e6 584 SUPERFAMILY SSF51445 249 528 5.48E-48 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS10595 be9f636b608e415b717b027d3efc40e6 584 SUPERFAMILY SSF51445 14 182 5.48E-48 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS01900 924727390293bb20bc0cd6b30acd9fba 358 PANTHER PTHR22893 2 357 7.2E-152 T 23-04-2016 THIMO_RS01900 924727390293bb20bc0cd6b30acd9fba 358 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 335 3.1E-91 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 THIMO_RS01900 924727390293bb20bc0cd6b30acd9fba 358 Gene3D G3DSA:3.20.20.70 2 355 5.2E-126 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS01900 924727390293bb20bc0cd6b30acd9fba 358 SUPERFAMILY SSF51395 2 356 1.0E-114 T 23-04-2016 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 SUPERFAMILY SSF52172 4 122 5.41E-37 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 Gene3D G3DSA:1.10.10.10 147 223 3.4E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 PANTHER PTHR26402:SF530 3 223 1.6E-96 T 23-04-2016 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 Gene3D G3DSA:3.40.50.2300 4 146 7.4E-37 T 23-04-2016 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 PANTHER PTHR26402 3 223 1.6E-96 T 23-04-2016 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 SMART SM00862 146 222 4.4E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 Pfam PF00072 Response regulator receiver domain 5 113 2.1E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 SUPERFAMILY SSF46894 126 223 3.68E-24 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 SMART SM00448 3 113 1.6E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS16300 ddb0a03507368b2f1053c2ed62dffff6 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 221 3.4E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS01275 be316e76bcab81fa5b809121d240850f 471 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 232 451 2.3E-43 T 23-04-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 THIMO_RS01275 be316e76bcab81fa5b809121d240850f 471 PANTHER PTHR30288:SF0 15 466 4.8E-90 T 23-04-2016 THIMO_RS01275 be316e76bcab81fa5b809121d240850f 471 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 24 121 2.4E-21 T 23-04-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 THIMO_RS01275 be316e76bcab81fa5b809121d240850f 471 PANTHER PTHR30288 15 466 4.8E-90 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Gene3D G3DSA:3.30.300.30 518 637 7.7E-24 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Pfam PF00501 AMP-binding enzyme 84 522 1.3E-91 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 260 271 - T 23-04-2016 IPR020845 AMP-binding, conserved site THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 PANTHER PTHR24095 24 647 0.0 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 82 8.6E-24 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Gene3D G3DSA:2.30.38.10 444 516 9.4E-6 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 SUPERFAMILY SSF56801 13 640 4.71E-182 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 PANTHER PTHR24095:SF178 24 647 0.0 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 643 0.0 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.589 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Gene3D G3DSA:3.40.50.980 80 265 1.5E-44 T 23-04-2016 THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 6.8E-22 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain THIMO_RS05000 92262a43a12025f511607d5e295af4f9 648 Gene3D G3DSA:3.40.50.980 266 423 4.8E-27 T 23-04-2016 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7 95 7.2E-11 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 PIRSF PIRSF000169 1 111 1.3E-24 T 23-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 PANTHER PTHR38689:SF1 6 107 2.6E-14 T 23-04-2016 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 5 107 1.1E-27 T 23-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 SUPERFAMILY SSF81343 3 107 3.11E-23 T 23-04-2016 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 Gene3D G3DSA:1.20.1300.10 2 107 4.7E-27 T 23-04-2016 THIMO_RS02200 59ccfca5fc1146ded86869258df7c899 114 PANTHER PTHR38689 6 107 2.6E-14 T 23-04-2016 THIMO_RS10240 40d2f4fdb3cf192a9f394753237d9ef2 216 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 30 196 1.1E-24 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component THIMO_RS10240 40d2f4fdb3cf192a9f394753237d9ef2 216 Gene3D G3DSA:3.40.50.10610 18 200 4.1E-11 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component THIMO_RS10240 40d2f4fdb3cf192a9f394753237d9ef2 216 SUPERFAMILY SSF159594 28 203 5.75E-22 T 23-04-2016 THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 PANTHER PTHR11579 7 204 4.0E-71 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 SUPERFAMILY SSF53335 11 207 1.64E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 8 206 2.6E-57 T 23-04-2016 THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 Gene3D G3DSA:3.40.50.150 14 207 4.9E-58 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 132 147 - T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 6 208 2.7E-64 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS06370 530ed26ed001e3fe17aee39a7f6b4163 210 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 2 209 34.886 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS04295 ea4652c0370390bfcbb941ed2dc3618c 101 Pfam PF14076 Domain of unknown function (DUF4258) 19 94 2.4E-6 T 23-04-2016 IPR025354 Protein of unknown function DUF4258 THIMO_RS01235 0fe4904a56c2402aa3206cd9bfe07dc3 343 Pfam PF17179 4Fe-4S dicluster domain 235 331 4.3E-33 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS01235 0fe4904a56c2402aa3206cd9bfe07dc3 343 Gene3D G3DSA:1.10.1060.10 218 342 1.2E-11 T 23-04-2016 THIMO_RS01235 0fe4904a56c2402aa3206cd9bfe07dc3 343 PANTHER PTHR40447 1 343 2.9E-82 T 23-04-2016 THIMO_RS01235 0fe4904a56c2402aa3206cd9bfe07dc3 343 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 236 247 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01235 0fe4904a56c2402aa3206cd9bfe07dc3 343 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 317 328 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01235 0fe4904a56c2402aa3206cd9bfe07dc3 343 SUPERFAMILY SSF46548 233 338 9.16E-15 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 PANTHER PTHR30270 3 316 5.2E-107 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 311 28.615 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 Pfam PF02769 AIR synthase related protein, C-terminal domain 148 294 3.5E-9 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 314 6.2E-93 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 SUPERFAMILY SSF55326 3 136 2.27E-32 T 23-04-2016 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 PIRSF PIRSF005303 2 314 2.5E-79 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 Pfam PF00586 AIR synthase related protein, N-terminal domain 27 136 7.2E-23 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 SUPERFAMILY SSF56042 141 297 4.54E-34 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 Gene3D G3DSA:3.30.1330.10 2 138 2.3E-42 T 23-04-2016 IPR016188 PurM-like, N-terminal domain THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 PANTHER PTHR30270:SF0 3 316 5.2E-107 T 23-04-2016 THIMO_RS01005 542a58ea11c801a3992d908c3611001a 316 Gene3D G3DSA:3.90.650.10 143 314 3.7E-45 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PANTHER PTHR11071 1 171 3.8E-102 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 2.4E-38 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 53 65 2.4E-38 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 2.4E-38 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 17 32 2.4E-38 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 143 2.4E-38 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 48 65 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 PIRSF PIRSF001467 1 171 6.3E-69 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 Gene3D G3DSA:2.40.100.10 1 168 9.0E-71 T 23-04-2016 IPR029000 Cyclophilin-like domain THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 SUPERFAMILY SSF50891 1 169 5.99E-69 T 23-04-2016 IPR029000 Cyclophilin-like domain THIMO_RS05405 3c9c23c70c6f8794d6845bd59ab5eab2 171 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 166 2.4E-47 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 THIMO_RS03340 487d04b7f14a7dba376824664fc0b1ee 481 PIRSF PIRSF005522 1 481 2.7E-214 T 23-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 THIMO_RS03340 487d04b7f14a7dba376824664fc0b1ee 481 PANTHER PTHR34595:SF3 6 479 3.4E-263 T 23-04-2016 THIMO_RS03340 487d04b7f14a7dba376824664fc0b1ee 481 Pfam PF14403 Circularly permuted ATP-grasp type 2 81 457 1.3E-159 T 23-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 THIMO_RS03340 487d04b7f14a7dba376824664fc0b1ee 481 SUPERFAMILY SSF56059 54 219 1.44E-59 T 23-04-2016 THIMO_RS03340 487d04b7f14a7dba376824664fc0b1ee 481 SUPERFAMILY SSF56059 327 472 1.44E-59 T 23-04-2016 THIMO_RS03340 487d04b7f14a7dba376824664fc0b1ee 481 PANTHER PTHR34595 6 479 3.4E-263 T 23-04-2016 THIMO_RS03095 f250c0d7091905c5a0e99ab24c5b69b7 383 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 39 1.7E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03095 f250c0d7091905c5a0e99ab24c5b69b7 383 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 14 37 1.6E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS03095 f250c0d7091905c5a0e99ab24c5b69b7 383 SUPERFAMILY SSF54523 130 201 3.98E-7 T 23-04-2016 THIMO_RS03095 f250c0d7091905c5a0e99ab24c5b69b7 383 SUPERFAMILY SSF54523 20 95 3.98E-7 T 23-04-2016 THIMO_RS03095 f250c0d7091905c5a0e99ab24c5b69b7 383 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 18 38 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 SUPERFAMILY SSF52540 1 195 1.34E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 246 435 1.4E-34 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 PANTHER PTHR21343 1 233 5.7E-122 T 23-04-2016 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 PANTHER PTHR21343 249 449 5.7E-122 T 23-04-2016 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 6 444 3.4E-125 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 1 441 37.775 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 188 2.7E-17 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 PANTHER PTHR21343:SF6 1 233 5.7E-122 T 23-04-2016 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 PANTHER PTHR21343:SF6 249 449 5.7E-122 T 23-04-2016 THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 Gene3D G3DSA:3.40.50.880 246 453 8.9E-30 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 Gene3D G3DSA:3.40.50.300 3 190 3.7E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00750 9ca08b1cbb50c736b9eb2abbeb40651d 456 SUPERFAMILY SSF52317 243 451 3.21E-32 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS14140 396df56e642cffa5a72603654e790805 301 SUPERFAMILY SSF51735 10 299 2.37E-94 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14140 396df56e642cffa5a72603654e790805 301 Gene3D G3DSA:3.40.50.720 10 199 7.4E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14140 396df56e642cffa5a72603654e790805 301 Gene3D G3DSA:3.90.25.10 232 285 3.5E-28 T 23-04-2016 THIMO_RS14140 396df56e642cffa5a72603654e790805 301 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 10 299 4.1E-96 T 23-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family THIMO_RS14140 396df56e642cffa5a72603654e790805 301 Pfam PF04321 RmlD substrate binding domain 10 300 1.1E-100 T 23-04-2016 IPR029903 RmlD-like substrate binding domain THIMO_RS14140 396df56e642cffa5a72603654e790805 301 PANTHER PTHR10491 2 300 2.3E-92 T 23-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family THIMO_RS14140 396df56e642cffa5a72603654e790805 301 PANTHER PTHR10491:SF4 2 300 2.3E-92 T 23-04-2016 THIMO_RS02185 6399ba687bebffea6c326703d96d79e2 191 PANTHER PTHR36558:SF1 2 189 5.3E-50 T 23-04-2016 THIMO_RS02185 6399ba687bebffea6c326703d96d79e2 191 Gene3D G3DSA:3.90.1570.10 6 177 3.1E-24 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS02185 6399ba687bebffea6c326703d96d79e2 191 Pfam PF05685 Putative restriction endonuclease 12 160 7.6E-29 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS02185 6399ba687bebffea6c326703d96d79e2 191 PANTHER PTHR36558 2 189 5.3E-50 T 23-04-2016 THIMO_RS02185 6399ba687bebffea6c326703d96d79e2 191 SUPERFAMILY SSF52980 7 179 1.23E-26 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 Pfam PF13180 PDZ domain 318 402 1.7E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 72 278 1.3E-66 T 23-04-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 PANTHER PTHR31620 72 274 6.3E-40 T 23-04-2016 THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 SUPERFAMILY SSF50156 317 389 3.81E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 SMART SM00228 317 389 3.2E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 Gene3D G3DSA:2.30.42.10 319 403 7.5E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 PANTHER PTHR31620:SF8 72 274 6.3E-40 T 23-04-2016 THIMO_RS07070 c24caf068b328dc1424cb89f47c38a10 404 SUPERFAMILY SSF159501 65 307 2.44E-62 T 23-04-2016 THIMO_RS04865 ed79505a68d6d35433ca3d08bc971d63 259 Pfam PF05598 Transposase domain (DUF772) 2 68 2.1E-19 T 23-04-2016 IPR008490 Transposase InsH, N-terminal THIMO_RS04865 ed79505a68d6d35433ca3d08bc971d63 259 PANTHER PTHR35604 4 107 1.2E-17 T 23-04-2016 THIMO_RS04865 ed79505a68d6d35433ca3d08bc971d63 259 PANTHER PTHR35604 127 144 1.2E-17 T 23-04-2016 THIMO_RS04865 ed79505a68d6d35433ca3d08bc971d63 259 Pfam PF01609 Transposase DDE domain 151 242 3.9E-9 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS04265 80a02329a3890a3a49a70d0634dc9c6e 180 SUPERFAMILY SSF117782 97 180 1.57E-10 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS04265 80a02329a3890a3a49a70d0634dc9c6e 180 Pfam PF01906 Putative heavy-metal-binding 123 179 2.7E-6 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS04265 80a02329a3890a3a49a70d0634dc9c6e 180 Gene3D G3DSA:3.30.110.70 113 180 5.8E-9 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 THIMO_RS15570 c30240d6932c949956b0901127e953b0 196 Pfam PF05175 Methyltransferase small domain 25 190 1.0E-35 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 THIMO_RS15570 c30240d6932c949956b0901127e953b0 196 SUPERFAMILY SSF53335 12 182 5.78E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS15570 c30240d6932c949956b0901127e953b0 196 Gene3D G3DSA:3.40.50.150 25 174 4.7E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS15570 c30240d6932c949956b0901127e953b0 196 PANTHER PTHR18895 19 184 3.1E-27 T 23-04-2016 THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 Pfam PF13360 PQQ-like domain 90 321 3.7E-52 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 Pfam PF13360 PQQ-like domain 332 393 1.3E-5 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SUPERFAMILY SSF50998 43 385 2.04E-77 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 PANTHER PTHR32303:SF8 44 382 6.4E-73 T 23-04-2016 THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 11 394 36.371 T 23-04-2016 IPR017687 Outer membrane protein assembly factor BamB THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 PANTHER PTHR32303 44 382 6.4E-73 T 23-04-2016 THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 17 392 1.2E-124 T 23-04-2016 IPR017687 Outer membrane protein assembly factor BamB THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 Gene3D G3DSA:2.140.10.10 16 399 1.9E-75 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 332 363 0.36 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 291 322 0.022 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 117 148 0.12 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 77 108 1.1 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 253 284 1.6E-6 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat THIMO_RS09030 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 156 188 0.022 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat THIMO_RS11085 314915152ec640f41d3d018a227179bf 354 PANTHER PTHR33529 1 352 5.8E-91 T 23-04-2016 THIMO_RS11085 314915152ec640f41d3d018a227179bf 354 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 3 353 1.8E-113 T 23-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 THIMO_RS11085 314915152ec640f41d3d018a227179bf 354 PANTHER PTHR33529:SF1 1 352 5.8E-91 T 23-04-2016 THIMO_RS11085 314915152ec640f41d3d018a227179bf 354 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 352 2.0E-61 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 SUPERFAMILY SSF53448 1 253 2.93E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 244 5.0E-89 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 251 42.818 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 PANTHER PTHR21485 1 253 6.7E-105 T 23-04-2016 THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 PANTHER PTHR21485:SF4 1 253 6.7E-105 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 Pfam PF02348 Cytidylyltransferase 5 224 2.7E-56 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 THIMO_RS16095 665e0487491d2ccd462bf430e7b6e78e 256 Gene3D G3DSA:3.90.550.10 1 252 5.2E-76 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 Pfam PF00137 ATP synthase subunit C 10 72 4.8E-10 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 7.0E-27 T 23-04-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 23-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 PANTHER PTHR10031 1 77 5.1E-22 T 23-04-2016 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 SUPERFAMILY SSF81333 3 76 1.44E-17 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 76 14.942 T 23-04-2016 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 Gene3D G3DSA:1.20.20.10 4 76 2.8E-28 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 PRINTS PR00124 ATP synthase C subunit signature 11 30 5.2E-10 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 PRINTS PR00124 ATP synthase C subunit signature 49 74 5.2E-10 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 THIMO_RS05575 4b7b310a87be18e154870f03e2ab67bf 77 PRINTS PR00124 ATP synthase C subunit signature 32 47 5.2E-10 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 Gene3D G3DSA:3.30.470.20 118 248 4.1E-55 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 Pfam PF01259 SAICAR synthetase 14 268 1.4E-98 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 ProSitePatterns PS01057 SAICAR synthetase signature 1. 106 120 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 12 293 25.055 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 Gene3D G3DSA:3.30.200.20 3 117 4.4E-41 T 23-04-2016 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 ProSitePatterns PS01058 SAICAR synthetase signature 2. 205 213 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 PANTHER PTHR11609:SF6 12 292 1.6E-143 T 23-04-2016 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 SUPERFAMILY SSF56104 4 293 2.45E-99 T 23-04-2016 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 15 294 1.6E-76 T 23-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 THIMO_RS03650 a9f50d32f4d52e3af8d1850e23351646 298 PANTHER PTHR11609 12 292 1.6E-143 T 23-04-2016 THIMO_RS01460 a2333a93470ddc46e265de486e0b320a 133 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 128 9.824 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS01460 a2333a93470ddc46e265de486e0b320a 133 Gene3D G3DSA:3.40.50.1010 2 123 1.8E-9 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS01460 a2333a93470ddc46e265de486e0b320a 133 PANTHER PTHR33653 1 133 8.9E-20 T 23-04-2016 THIMO_RS01460 a2333a93470ddc46e265de486e0b320a 133 PANTHER PTHR33653:SF4 1 133 8.9E-20 T 23-04-2016 THIMO_RS01460 a2333a93470ddc46e265de486e0b320a 133 Pfam PF01850 PIN domain 3 121 3.4E-8 T 23-04-2016 IPR002716 PIN domain THIMO_RS01460 a2333a93470ddc46e265de486e0b320a 133 SUPERFAMILY SSF88723 2 130 1.32E-16 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS12120 d307636adba48905cd60bc5bf3101c98 181 PANTHER PTHR35011:SF1 2 173 3.1E-50 T 23-04-2016 THIMO_RS12120 d307636adba48905cd60bc5bf3101c98 181 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 21 151 6.4E-24 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component THIMO_RS12120 d307636adba48905cd60bc5bf3101c98 181 PANTHER PTHR35011 2 173 3.1E-50 T 23-04-2016 THIMO_RS05415 20f606a1ea75d165a2765a43c645bda5 317 Pfam PF03547 Membrane transport protein 8 131 6.9E-12 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 THIMO_RS05415 20f606a1ea75d165a2765a43c645bda5 317 Pfam PF03547 Membrane transport protein 168 311 2.9E-8 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 THIMO_RS05415 20f606a1ea75d165a2765a43c645bda5 317 PANTHER PTHR36838 2 317 1.7E-24 T 23-04-2016 THIMO_RS03695 9b644847cbb05229e0c00408762e0cd5 314 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 89 272 1.8E-20 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 THIMO_RS03695 9b644847cbb05229e0c00408762e0cd5 314 PANTHER PTHR11624 88 314 6.5E-37 T 23-04-2016 IPR033247 Transketolase family THIMO_RS03695 9b644847cbb05229e0c00408762e0cd5 314 PANTHER PTHR11624:SF86 88 314 6.5E-37 T 23-04-2016 THIMO_RS03695 9b644847cbb05229e0c00408762e0cd5 314 SUPERFAMILY SSF52518 16 62 1.67E-52 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03695 9b644847cbb05229e0c00408762e0cd5 314 SUPERFAMILY SSF52518 94 306 1.67E-52 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03695 9b644847cbb05229e0c00408762e0cd5 314 Gene3D G3DSA:3.40.50.970 17 307 5.0E-67 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS02295 7ca470079e576df4f2c52f331ca8c3c7 675 PANTHER PTHR30509 5 244 4.6E-97 T 23-04-2016 THIMO_RS02295 7ca470079e576df4f2c52f331ca8c3c7 675 PANTHER PTHR30509 311 647 4.6E-97 T 23-04-2016 THIMO_RS02295 7ca470079e576df4f2c52f331ca8c3c7 675 Pfam PF04632 Fusaric acid resistance protein family 9 666 5.1E-172 T 23-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 THIMO_RS02295 7ca470079e576df4f2c52f331ca8c3c7 675 PANTHER PTHR30509:SF1 5 244 4.6E-97 T 23-04-2016 THIMO_RS02295 7ca470079e576df4f2c52f331ca8c3c7 675 PANTHER PTHR30509:SF1 311 647 4.6E-97 T 23-04-2016 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 PIRSF PIRSF500134 1 442 8.0E-188 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 Gene3D G3DSA:1.20.5.100 207 233 2.1E-16 T 23-04-2016 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 8.0E-139 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 321 423 2.5E-30 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 PANTHER PTHR11374 1 444 5.5E-251 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 186 3.0E-65 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 SUPERFAMILY SSF51735 1 194 2.16E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 SUPERFAMILY SSF52413 309 435 3.79E-38 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 Gene3D G3DSA:3.40.50.720 235 440 1.5E-73 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 2.6E-38 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 PANTHER PTHR11374:SF18 1 444 5.5E-251 T 23-04-2016 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 PIRSF PIRSF000124 1 439 4.4E-151 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 SMART SM00984 320 424 2.7E-51 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 Gene3D G3DSA:3.40.50.720 1 206 1.2E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS13725 aabd62768a311f4adada9fdc68c5dbbc 445 SUPERFAMILY SSF48179 204 301 2.93E-34 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 THIMO_RS17390 37c4c839c254e68a4a13d46b2aeee7f0 559 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 54 547 2.3E-173 T 23-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 THIMO_RS17390 37c4c839c254e68a4a13d46b2aeee7f0 559 PANTHER PTHR30047:SF2 53 166 3.9E-209 T 23-04-2016 THIMO_RS17390 37c4c839c254e68a4a13d46b2aeee7f0 559 PANTHER PTHR30047 53 166 3.9E-209 T 23-04-2016 THIMO_RS17390 37c4c839c254e68a4a13d46b2aeee7f0 559 PANTHER PTHR30047 182 552 3.9E-209 T 23-04-2016 THIMO_RS17390 37c4c839c254e68a4a13d46b2aeee7f0 559 PANTHER PTHR30047:SF2 182 552 3.9E-209 T 23-04-2016 THIMO_RS17390 37c4c839c254e68a4a13d46b2aeee7f0 559 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 93 547 3.6E-135 T 23-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 Gene3D G3DSA:1.10.10.10 109 169 4.0E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 Pfam PF04542 Sigma-70 region 2 10 74 3.4E-14 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 PANTHER PTHR30173 3 169 2.4E-35 T 23-04-2016 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 Pfam PF08281 Sigma-70, region 4 114 165 1.7E-14 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 169 1.0E-27 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 32 62 - T 23-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 SUPERFAMILY SSF88946 5 89 7.06E-18 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 SUPERFAMILY SSF88659 108 169 3.74E-16 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS11750 e7725f1b0e5dbe7dab9132130e2a71ad 176 Gene3D G3DSA:1.10.1740.10 4 95 1.0E-19 T 23-04-2016 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 Gene3D G3DSA:1.20.5.440 92 134 8.8E-17 T 23-04-2016 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 9.2E-41 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 20.14 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 SUPERFAMILY SSF51344 3 86 3.66E-24 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 7.9E-28 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 PANTHER PTHR13822 1 138 1.3E-44 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 83 2.0E-23 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 Gene3D G3DSA:2.60.15.10 3 91 1.3E-28 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 SUPERFAMILY SSF46604 88 137 1.8E-13 T 23-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain THIMO_RS05605 079f617ba4e81801671faec086fa257e 141 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 1.9E-9 T 23-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Pfam PF08264 Anticodon-binding domain of tRNA 691 846 2.7E-24 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 647 1.8E-216 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PANTHER PTHR11946 237 262 0.0 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF47323 658 934 2.8E-73 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:3.90.740.10 206 395 1.4E-54 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 5.5E-33 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 533 546 5.5E-33 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 5.5E-33 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 5.5E-33 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 407 422 5.5E-33 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF50677 204 409 2.09E-54 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PANTHER PTHR11946 6 215 0.0 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PANTHER PTHR11946 289 876 0.0 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:1.10.730.10 648 795 6.9E-41 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF52374 409 653 2.69E-139 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF52374 3 202 2.69E-139 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 848 6.4E-280 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PANTHER PTHR11946:SF11 289 876 0.0 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:3.40.50.620 412 642 6.8E-139 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:3.40.50.620 14 200 6.8E-139 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PANTHER PTHR11946:SF11 6 215 0.0 T 23-04-2016 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 934 21.438 T 23-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 Pfam PF06827 Zinc finger found in FPG and IleRS 905 931 3.0E-7 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type THIMO_RS05440 e4c066f6b1a4fa437b424d5266b2a9f4 943 PANTHER PTHR11946:SF11 237 262 0.0 T 23-04-2016 THIMO_RS17395 139bceb0e474bc353ed1c2ee5cf4a21d 240 PANTHER PTHR30231:SF11 14 231 3.2E-57 T 23-04-2016 THIMO_RS17395 139bceb0e474bc353ed1c2ee5cf4a21d 240 SMART SM00479 49 230 9.6E-19 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS17395 139bceb0e474bc353ed1c2ee5cf4a21d 240 Gene3D G3DSA:3.30.420.10 43 230 2.9E-42 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS17395 139bceb0e474bc353ed1c2ee5cf4a21d 240 Pfam PF00929 Exonuclease 51 221 1.1E-10 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS17395 139bceb0e474bc353ed1c2ee5cf4a21d 240 PANTHER PTHR30231 14 231 3.2E-57 T 23-04-2016 THIMO_RS17395 139bceb0e474bc353ed1c2ee5cf4a21d 240 SUPERFAMILY SSF53098 43 228 4.25E-36 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 SUPERFAMILY SSF52200 19 149 1.15E-13 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 Pfam PF03781 Sulfatase-modifying factor enzyme 1 687 932 1.5E-52 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 SUPERFAMILY SSF52540 180 430 4.57E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 SUPERFAMILY SSF56436 687 934 2.05E-55 T 23-04-2016 IPR016187 C-type lectin fold THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 Gene3D G3DSA:3.40.50.10140 20 137 4.0E-8 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 Gene3D G3DSA:3.90.1580.10 686 935 5.6E-56 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 PANTHER PTHR23150 616 932 5.2E-42 T 23-04-2016 THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 PANTHER PTHR23150 8 22 5.2E-42 T 23-04-2016 THIMO_RS18415 7700d9e09e63a7d1250bceb2600cb00e 941 Pfam PF13676 TIR domain 20 129 1.5E-14 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS02915 f77c4849ebed82a567b21746270132e1 232 SUPERFAMILY SSF53300 12 190 1.59E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS02915 f77c4849ebed82a567b21746270132e1 232 Gene3D G3DSA:3.40.50.410 12 185 3.4E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS02915 f77c4849ebed82a567b21746270132e1 232 Pfam PF00092 von Willebrand factor type A domain 60 171 1.4E-5 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS02915 f77c4849ebed82a567b21746270132e1 232 SMART SM00327 13 188 1.3E-5 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS01540 cd2931564ce7d1a16535711e4eb79fa0 479 TIGRFAM TIGR01894 cas_TM1795_cmr1: CRISPR type III-B/RAMP module RAMP protein Cmr1 9 44 3.0E-8 T 23-04-2016 IPR007522 CRISPR-associated protein TM1795 THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 4 208 1.1E-44 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 Gene3D G3DSA:3.40.50.620 2 211 1.3E-62 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 PANTHER PTHR12039 2 209 5.7E-45 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 2 63 1.2E-8 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 209 26.7 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 Pfam PF01467 Cytidylyltransferase-like 4 183 1.1E-27 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 THIMO_RS05140 b5fc2a7dd8e5404e5408109460bf4c18 220 SUPERFAMILY SSF52374 1 209 3.75E-49 T 23-04-2016 THIMO_RS10615 b2f52fda0d124817cd89cc3449a42aec 480 PANTHER PTHR30508:SF1 7 480 0.0 T 23-04-2016 THIMO_RS10615 b2f52fda0d124817cd89cc3449a42aec 480 SUPERFAMILY SSF101960 36 477 1.44E-140 T 23-04-2016 THIMO_RS10615 b2f52fda0d124817cd89cc3449a42aec 480 PANTHER PTHR30508 7 480 0.0 T 23-04-2016 THIMO_RS10615 b2f52fda0d124817cd89cc3449a42aec 480 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 14 471 4.7E-196 T 23-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 THIMO_RS10615 b2f52fda0d124817cd89cc3449a42aec 480 Pfam PF01458 Uncharacterized protein family (UPF0051) 218 451 1.0E-70 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 Gene3D G3DSA:2.60.410.10 281 370 3.3E-22 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 PANTHER PTHR21581 34 388 4.4E-109 T 23-04-2016 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 SUPERFAMILY SSF69189 273 369 1.96E-20 T 23-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 Gene3D G3DSA:3.40.710.10 20 279 1.3E-98 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 SUPERFAMILY SSF56601 15 281 1.04E-86 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 281 370 1.1E-16 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 121 138 1.8E-16 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 148 161 1.8E-16 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 68 79 1.8E-16 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 PANTHER PTHR21581:SF3 34 388 4.4E-109 T 23-04-2016 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 260 4.1E-83 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 THIMO_RS13225 d4fc54cd9e4f66dbd4e03f61aedd2c08 388 SMART SM00936 281 371 1.4E-27 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS02110 a7e295a222ea581097b88b018142509f 260 Gene3D G3DSA:3.60.10.10 156 243 3.9E-4 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS02110 a7e295a222ea581097b88b018142509f 260 SUPERFAMILY SSF56219 4 242 3.66E-31 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS02110 a7e295a222ea581097b88b018142509f 260 PANTHER PTHR14859 40 245 3.4E-26 T 23-04-2016 IPR027317 PGAP2-interacting protein THIMO_RS02110 a7e295a222ea581097b88b018142509f 260 PANTHER PTHR14859 6 21 3.4E-26 T 23-04-2016 IPR027317 PGAP2-interacting protein THIMO_RS02110 a7e295a222ea581097b88b018142509f 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 235 4.3E-17 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 TIGRFAM TIGR03235 DNA_S_dndA: cysteine desulfurase DndA 4 356 1.2E-154 T 23-04-2016 IPR017644 Cysteine desulfurase DndA THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 PANTHER PTHR11601 2 376 8.1E-150 T 23-04-2016 THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 Gene3D G3DSA:3.40.640.10 15 252 5.3E-81 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 Gene3D G3DSA:3.90.1150.10 253 373 1.3E-31 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 PANTHER PTHR11601:SF45 2 376 8.1E-150 T 23-04-2016 THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 SUPERFAMILY SSF53383 3 375 2.55E-94 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 Pfam PF00266 Aminotransferase class-V 3 361 1.6E-68 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS12935 7a95e57613ac06f3cc1c8064a89c4463 376 PIRSF PIRSF005572 1 376 1.8E-108 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 THIMO_RS18555 fe4aecd91146064d17f861e219267d95 474 Pfam PF03781 Sulfatase-modifying factor enzyme 1 250 472 4.8E-54 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS18555 fe4aecd91146064d17f861e219267d95 474 PANTHER PTHR23150 239 474 6.6E-61 T 23-04-2016 THIMO_RS18555 fe4aecd91146064d17f861e219267d95 474 Gene3D G3DSA:3.90.1580.10 243 473 2.8E-63 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS18555 fe4aecd91146064d17f861e219267d95 474 SUPERFAMILY SSF56436 249 474 1.11E-63 T 23-04-2016 IPR016187 C-type lectin fold THIMO_RS09810 b94da451feb4955518316842afba8df4 154 Pfam PF00210 Ferritin-like domain 10 142 4.4E-27 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PANTHER PTHR30295:SF9 1 151 4.7E-32 T 23-04-2016 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 SUPERFAMILY SSF47240 1 150 7.22E-39 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PANTHER PTHR30295 1 151 4.7E-32 T 23-04-2016 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 153 1.5E-61 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 Gene3D G3DSA:1.20.1260.10 1 152 3.2E-44 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 65 85 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 107 127 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 86 106 1.7E-48 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS09810 b94da451feb4955518316842afba8df4 154 PIRSF PIRSF002560 1 154 2.2E-55 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 THIMO_RS01545 4a658931272bf350a972f54a42552c5b 105 Pfam PF09623 CRISPR-associated protein NE0113 (Cas_NE0113) 26 77 8.6E-6 T 23-04-2016 IPR019092 CRISPR-assoc protein, NE0113/Csx13 THIMO_RS06465 a84b1c062f8854a575e37f32ca679500 430 SMART SM00028 163 196 4.8E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS06465 a84b1c062f8854a575e37f32ca679500 430 Gene3D G3DSA:1.25.40.10 156 198 5.0E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06465 a84b1c062f8854a575e37f32ca679500 430 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 118 1.2E-32 T 23-04-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI THIMO_RS06465 a84b1c062f8854a575e37f32ca679500 430 SUPERFAMILY SSF48452 154 260 2.23E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06465 a84b1c062f8854a575e37f32ca679500 430 Pfam PF07719 Tetratricopeptide repeat 164 196 1.0E-6 T 23-04-2016 IPR013105 Tetratricopeptide repeat 2 THIMO_RS06465 a84b1c062f8854a575e37f32ca679500 430 Gene3D G3DSA:1.25.40.10 199 284 2.1E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS09750 98ca227abd75eb6360fa6e0b684a7896 759 Pfam PF05170 AsmA family 403 653 1.3E-27 T 23-04-2016 IPR007844 AsmA THIMO_RS09750 98ca227abd75eb6360fa6e0b684a7896 759 Pfam PF05170 AsmA family 9 196 6.4E-11 T 23-04-2016 IPR007844 AsmA THIMO_RS09750 98ca227abd75eb6360fa6e0b684a7896 759 PANTHER PTHR30441 6 754 1.6E-39 T 23-04-2016 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 Pfam PF01593 Flavin containing amine oxidoreductase 28 496 1.0E-36 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 Gene3D G3DSA:3.50.50.60 215 371 1.3E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 Gene3D G3DSA:3.50.50.60 19 109 1.3E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 PANTHER PTHR10668:SF4 20 506 4.1E-119 T 23-04-2016 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 20 505 9.5E-197 T 23-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 SUPERFAMILY SSF51905 464 496 9.55E-79 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 SUPERFAMILY SSF51905 18 333 9.55E-79 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14330 7290b48ef99a588831ba78b9c43b6c82 509 PANTHER PTHR10668 20 506 4.1E-119 T 23-04-2016 THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 208 26.513 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 PANTHER PTHR31760 1 210 1.7E-59 T 23-04-2016 THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 Pfam PF02527 rRNA small subunit methyltransferase G 28 206 9.6E-48 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 SUPERFAMILY SSF53335 12 210 2.03E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 PANTHER PTHR31760:SF0 1 210 1.7E-59 T 23-04-2016 THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 Gene3D G3DSA:3.40.50.150 11 208 9.3E-56 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 PIRSF PIRSF003078 5 212 7.7E-53 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 THIMO_RS05550 5cff9f8320cd1e01af8e0ea7ee285c7a 212 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 33 209 1.2E-46 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 THIMO_RS14970 e7744d045024b0cfae087aa04b1e2cd6 154 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 153 8.4E-29 T 23-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane THIMO_RS17520 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 SMART SM00563 75 190 6.8E-28 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 THIMO_RS17520 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 Pfam PF01553 Acyltransferase 63 187 1.4E-17 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 THIMO_RS17520 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 Gene3D G3DSA:3.40.1130.10 72 229 1.6E-16 T 23-04-2016 THIMO_RS17520 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 PANTHER PTHR10434 1 241 2.0E-43 T 23-04-2016 THIMO_RS17520 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 SUPERFAMILY SSF69593 33 234 1.57E-34 T 23-04-2016 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 Hamap MF_00013 Octanoyltransferase [lipB]. 4 207 34.108 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 Pfam PF03099 Biotin/lipoate A/B protein ligase family 53 159 4.2E-6 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 29 181 2.0E-53 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 Gene3D G3DSA:3.90.1550.10 4 183 1.6E-60 T 23-04-2016 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 PANTHER PTHR10993 15 178 3.2E-65 T 23-04-2016 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 SUPERFAMILY SSF55681 12 187 1.49E-59 T 23-04-2016 THIMO_RS13220 2027508033027d4f73ea9667d1a5f528 215 PIRSF PIRSF016262 2 211 7.2E-50 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 THIMO_RS07180 54d51a43f5b2368e066b1e59ed99c62e 710 SUPERFAMILY SSF52151 307 386 2.54E-8 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS07180 54d51a43f5b2368e066b1e59ed99c62e 710 SUPERFAMILY SSF52151 420 555 2.54E-8 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS07180 54d51a43f5b2368e066b1e59ed99c62e 710 Gene3D G3DSA:3.40.1090.10 301 390 8.4E-5 T 23-04-2016 THIMO_RS06645 d72cd3aff9c9558fafbdabcf9cf54ddd 147 SMART SM00448 32 144 2.7E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS06645 d72cd3aff9c9558fafbdabcf9cf54ddd 147 SUPERFAMILY SSF52172 32 146 7.26E-25 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS06645 d72cd3aff9c9558fafbdabcf9cf54ddd 147 Pfam PF00072 Response regulator receiver domain 34 144 5.9E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS06645 d72cd3aff9c9558fafbdabcf9cf54ddd 147 Gene3D G3DSA:3.40.50.2300 30 146 1.2E-24 T 23-04-2016 THIMO_RS06645 d72cd3aff9c9558fafbdabcf9cf54ddd 147 PANTHER PTHR26402 32 144 3.1E-22 T 23-04-2016 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 Pfam PF02167 Cytochrome C1 family 34 245 6.6E-20 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 PANTHER PTHR10266 190 247 1.4E-46 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 PANTHER PTHR10266 5 162 1.4E-46 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 SUPERFAMILY SSF46626 18 160 1.53E-45 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 SUPERFAMILY SSF46626 188 210 1.53E-45 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 PANTHER PTHR10266:SF3 190 247 1.4E-46 T 23-04-2016 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 PANTHER PTHR10266:SF3 5 162 1.4E-46 T 23-04-2016 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 Gene3D G3DSA:1.20.5.100 214 247 3.0E-10 T 23-04-2016 THIMO_RS07880 5b5388d246829e501f854bc5e48a765a 247 Gene3D G3DSA:1.10.760.10 20 212 2.2E-59 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS03205 96f327fdd74f49f873bc94182709769e 338 PANTHER PTHR30473 11 338 2.5E-168 T 23-04-2016 THIMO_RS03205 96f327fdd74f49f873bc94182709769e 338 Gene3D G3DSA:3.40.50.300 121 323 4.9E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03205 96f327fdd74f49f873bc94182709769e 338 Pfam PF02562 PhoH-like protein 121 324 2.9E-91 T 23-04-2016 IPR003714 PhoH-like protein GO:0005524 THIMO_RS03205 96f327fdd74f49f873bc94182709769e 338 SUPERFAMILY SSF52540 121 301 2.85E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03205 96f327fdd74f49f873bc94182709769e 338 PANTHER PTHR30473:SF1 11 338 2.5E-168 T 23-04-2016 THIMO_RS01400 3b8a726b7549414b387a16f750a10012 226 SMART SM00858 101 163 2.7E-12 T 23-04-2016 IPR013974 SAF domain THIMO_RS01400 3b8a726b7549414b387a16f750a10012 226 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 89 224 2.8E-40 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal THIMO_RS01400 3b8a726b7549414b387a16f750a10012 226 PANTHER PTHR36307 24 226 2.0E-33 T 23-04-2016 THIMO_RS01400 3b8a726b7549414b387a16f750a10012 226 Pfam PF13144 Chaperone for flagella basal body P-ring formation 24 224 1.2E-53 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal THIMO_RS15335 ce01c022172af2413f791f7e5e31b332 89 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 83 1.3E-24 T 23-04-2016 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 324 2.9E-63 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 SUPERFAMILY SSF161111 182 250 4.18E-51 T 23-04-2016 THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 SUPERFAMILY SSF161111 20 153 4.18E-51 T 23-04-2016 THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 Pfam PF01545 Cation efflux family 32 249 1.1E-37 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 PANTHER PTHR11562 9 330 4.7E-132 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 Gene3D G3DSA:1.20.1510.10 24 249 1.2E-50 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain THIMO_RS08560 46e70467f632a72367f18a27d54a4d01 339 PANTHER PTHR11562:SF40 9 330 4.7E-132 T 23-04-2016 THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 Pfam PF00575 S1 RNA binding domain 38 112 6.4E-8 T 23-04-2016 IPR003029 S1 domain GO:0003676 THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 SMART SM00316 37 114 2.0E-10 T 23-04-2016 IPR022967 RNA-binding domain, S1 THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 Pfam PF10150 Ribonuclease E/G family 116 388 4.8E-102 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 421 1.2E-156 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 SUPERFAMILY SSF50249 39 119 6.29E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 PANTHER PTHR30001 1 484 7.8E-206 T 23-04-2016 THIMO_RS12435 4681daa59f7c9f61a80a39d2bb86842b 484 Gene3D G3DSA:2.40.50.140 30 120 4.9E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS08120 fea29b062a77f709150da46d967a56e6 73 Pfam PF10276 Zinc-finger domain 34 69 3.7E-9 T 23-04-2016 IPR019401 Zinc finger, CHCC-type THIMO_RS08120 fea29b062a77f709150da46d967a56e6 73 Gene3D G3DSA:2.60.260.40 23 72 2.1E-18 T 23-04-2016 IPR019401 Zinc finger, CHCC-type THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 1.8E-173 T 23-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 2.8E-174 T 23-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 72.445 T 23-04-2016 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 Gene3D G3DSA:3.40.1670.10 337 454 9.9E-56 T 23-04-2016 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 PANTHER PTHR30108 1 488 5.6E-265 T 23-04-2016 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 Gene3D G3DSA:1.20.5.570 455 487 6.4E-18 T 23-04-2016 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 SUPERFAMILY SSF50475 3 322 1.8E-127 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 PANTHER PTHR30108:SF1 1 488 5.6E-265 T 23-04-2016 THIMO_RS06540 95b276207b52831b73503a6eae22f61d 488 SUPERFAMILY SSF143968 323 487 1.06E-68 T 23-04-2016 THIMO_RS06515 e35e34664364d03e66f94c8ee2486a3b 257 SUPERFAMILY SSF69618 10 250 4.05E-49 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06515 e35e34664364d03e66f94c8ee2486a3b 257 Pfam PF02602 Uroporphyrinogen-III synthase HemD 23 245 3.5E-42 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 THIMO_RS06515 e35e34664364d03e66f94c8ee2486a3b 257 Gene3D G3DSA:3.40.50.10090 128 249 7.1E-12 T 23-04-2016 THIMO_RS06515 e35e34664364d03e66f94c8ee2486a3b 257 Gene3D G3DSA:3.40.50.10090 6 122 7.0E-21 T 23-04-2016 THIMO_RS06515 e35e34664364d03e66f94c8ee2486a3b 257 PANTHER PTHR38042:SF1 5 247 7.8E-56 T 23-04-2016 THIMO_RS06515 e35e34664364d03e66f94c8ee2486a3b 257 PANTHER PTHR38042 5 247 7.8E-56 T 23-04-2016 THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 SUPERFAMILY SSF101852 163 246 1.27E-20 T 23-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 PANTHER PTHR35092 6 253 7.4E-54 T 23-04-2016 THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 9 244 5.3E-67 T 23-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 Gene3D G3DSA:2.40.30.90 165 246 7.0E-22 T 23-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 PIRSF PIRSF006779 5 248 4.8E-46 T 23-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 SUPERFAMILY SSF102522 8 148 1.96E-39 T 23-04-2016 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal THIMO_RS13495 313e82ddd8cf90013adaebd80aa496ac 253 PANTHER PTHR35092:SF1 6 253 7.4E-54 T 23-04-2016 THIMO_RS06750 b4bd91fd90fb6707273c5da7a965c23a 157 Gene3D G3DSA:3.40.630.30 11 154 2.8E-32 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS06750 b4bd91fd90fb6707273c5da7a965c23a 157 PANTHER PTHR23091:SF247 12 154 1.9E-30 T 23-04-2016 THIMO_RS06750 b4bd91fd90fb6707273c5da7a965c23a 157 SUPERFAMILY SSF55729 11 154 4.61E-32 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS06750 b4bd91fd90fb6707273c5da7a965c23a 157 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 19 150 1.2E-37 T 23-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 THIMO_RS06750 b4bd91fd90fb6707273c5da7a965c23a 157 Pfam PF00583 Acetyltransferase (GNAT) family 54 128 1.9E-13 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS06750 b4bd91fd90fb6707273c5da7a965c23a 157 PANTHER PTHR23091 12 154 1.9E-30 T 23-04-2016 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 PANTHER PTHR20861:SF2 11 281 1.0E-76 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 SUPERFAMILY SSF55060 165 281 5.76E-31 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 PANTHER PTHR20861 11 281 1.0E-76 T 23-04-2016 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 9 270 30.8 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Pfam PF08544 GHMP kinases C terminal 212 260 5.4E-5 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 PIRSF PIRSF010376 8 282 1.6E-79 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Gene3D G3DSA:3.30.70.890 165 281 5.6E-38 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Gene3D G3DSA:3.30.230.10 11 164 4.2E-52 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 10 280 2.2E-78 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Pfam PF00288 GHMP kinases N terminal domain 92 148 2.1E-9 T 23-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 THIMO_RS14885 013bf10e397f3a7ffe23efbfd1ab4bf2 284 SUPERFAMILY SSF54211 11 163 9.87E-41 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS10590 2b505905f65f03d6122909393a251ecc 268 Gene3D G3DSA:3.40.50.1000 170 228 1.0E-25 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS10590 2b505905f65f03d6122909393a251ecc 268 Gene3D G3DSA:3.40.50.1000 2 83 1.0E-25 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS10590 2b505905f65f03d6122909393a251ecc 268 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 2 265 3.3E-46 T 23-04-2016 IPR006380 Sucrose-phosphatase, N-terminal THIMO_RS10590 2b505905f65f03d6122909393a251ecc 268 Gene3D G3DSA:3.90.1070.10 98 169 6.8E-10 T 23-04-2016 THIMO_RS10590 2b505905f65f03d6122909393a251ecc 268 SUPERFAMILY SSF56784 2 226 9.62E-25 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS10590 2b505905f65f03d6122909393a251ecc 268 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 204 6.4E-20 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 234 3.8E-94 T 23-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 SUPERFAMILY SSF53098 1 176 5.7E-55 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 PANTHER PTHR30231 1 234 1.6E-114 T 23-04-2016 THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 Pfam PF00929 Exonuclease 4 166 1.2E-37 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 4 217 5.4E-65 T 23-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 SMART SM00479 2 175 9.8E-49 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 PANTHER PTHR30231:SF0 1 234 1.6E-114 T 23-04-2016 THIMO_RS06310 ed4694b0649cc0e196e58c0ec94b6458 242 Gene3D G3DSA:3.30.420.10 1 174 3.7E-64 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 Pfam PF12796 Ankyrin repeats (3 copies) 28 118 7.9E-12 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 56 85 0.0031 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 185 215 44.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 89 118 0.04 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 152 181 0.55 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 Gene3D G3DSA:1.25.40.20 28 212 2.1E-40 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 SUPERFAMILY SSF48403 27 210 2.87E-38 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 Pfam PF13637 Ankyrin repeats (many copies) 154 205 8.3E-8 T 23-04-2016 THIMO_RS10180 ed7074de09e6294fed828562bf8dbc5a 232 PANTHER PTHR24198 28 210 8.5E-35 T 23-04-2016 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 146 211 2.6E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 278 393 4.47E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 414 501 7.5E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 275 394 1.3E-26 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:3.90.10.10 135 145 1.6E-4 T 23-04-2016 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 414 494 1.2E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 405 506 5.28E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Pfam PF00034 Cytochrome c 42 107 4.4E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 24 108 2.76E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 140 211 4.24E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 PANTHER PTHR35008 277 536 1.2E-64 T 23-04-2016 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 PANTHER PTHR35008:SF4 277 536 1.2E-64 T 23-04-2016 THIMO_RS02175 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 25 109 1.7E-23 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 THIMO_RS11920 cd3f6546903de2f3da7f2b746dc35d10 317 Pfam PF02401 LytB protein 4 282 1.2E-90 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 THIMO_RS11920 cd3f6546903de2f3da7f2b746dc35d10 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4 284 4.7E-101 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 THIMO_RS11920 cd3f6546903de2f3da7f2b746dc35d10 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 2 286 37.712 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 THIMO_RS11920 cd3f6546903de2f3da7f2b746dc35d10 317 PANTHER PTHR30426 1 308 4.9E-153 T 23-04-2016 THIMO_RS06150 7724c9313dc85ca9326675baf1e87c8f 487 Pfam PF11855 Protein of unknown function (DUF3375) 12 477 2.2E-154 T 23-04-2016 IPR021804 Protein of unknown function DUF3375 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 PANTHER PTHR11751:SF3 6 324 2.5E-51 T 23-04-2016 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 Gene3D G3DSA:3.90.1150.10 233 303 1.3E-4 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 Gene3D G3DSA:3.40.640.10 44 232 2.3E-43 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 PANTHER PTHR11751 6 324 2.5E-51 T 23-04-2016 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 SUPERFAMILY SSF53383 3 323 6.97E-55 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 4 322 3.8E-110 T 23-04-2016 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443|UniPathway: UPA00148 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 Pfam PF00155 Aminotransferase class I and II 67 317 7.9E-30 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 THIMO_RS16195 337a742a48fc84132cdb24a11895107d 328 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 189 202 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 THIMO_RS14040 65ca295d879b25058b10023ded6be5a7 97 Gene3D G3DSA:2.40.50.220 1 83 1.3E-21 T 23-04-2016 IPR023414 Ethanolamine utilization protein-like domain THIMO_RS14040 65ca295d879b25058b10023ded6be5a7 97 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 10 79 9.0E-22 T 23-04-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml THIMO_RS14040 65ca295d879b25058b10023ded6be5a7 97 TIGRFAM TIGR02704 carboxysome_B: carboxysome peptide B 1 80 2.2E-39 T 23-04-2016 IPR014077 Carboxysome peptide B THIMO_RS14040 65ca295d879b25058b10023ded6be5a7 97 PANTHER PTHR36539 1 90 6.9E-12 T 23-04-2016 THIMO_RS14040 65ca295d879b25058b10023ded6be5a7 97 SUPERFAMILY SSF159133 1 82 4.19E-23 T 23-04-2016 IPR023414 Ethanolamine utilization protein-like domain THIMO_RS14040 65ca295d879b25058b10023ded6be5a7 97 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 77 3.7E-18 T 23-04-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml THIMO_RS06200 5c2187ffc759e685c075224c7afdbff7 85 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 9 84 7.3E-35 T 23-04-2016 IPR019886 Sodium symporter small subunit, predicted THIMO_RS06200 5c2187ffc759e685c075224c7afdbff7 85 Pfam PF13937 Domain of unknown function (DUF4212) 7 83 5.0E-35 T 23-04-2016 IPR019886 Sodium symporter small subunit, predicted THIMO_RS11665 2c1e481c1a56f67dba85649d5e75ea67 129 SUPERFAMILY SSF56762 3 114 3.92E-37 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS11665 2c1e481c1a56f67dba85649d5e75ea67 129 PANTHER PTHR11993:SF11 1 121 9.1E-41 T 23-04-2016 THIMO_RS11665 2c1e481c1a56f67dba85649d5e75ea67 129 Pfam PF00374 Nickel-dependent hydrogenase 1 114 7.5E-50 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS11665 2c1e481c1a56f67dba85649d5e75ea67 129 Gene3D G3DSA:1.10.645.10 2 114 9.7E-45 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS11665 2c1e481c1a56f67dba85649d5e75ea67 129 PANTHER PTHR11993 1 121 9.1E-41 T 23-04-2016 THIMO_RS15010 c8bdaed9d035834e8fbbaa7d959a428d 411 Pfam PF14238 Domain of unknown function (DUF4340) 84 263 1.0E-25 T 23-04-2016 IPR025641 Domain of unknown function DUF4340 THIMO_RS05915 894cfcd6e552de3856676a3b59686f24 232 Pfam PF07238 PilZ domain 14 114 2.0E-10 T 23-04-2016 IPR009875 PilZ domain GO:0035438 THIMO_RS05915 894cfcd6e552de3856676a3b59686f24 232 SUPERFAMILY SSF141371 10 122 5.49E-8 T 23-04-2016 THIMO_RS05915 894cfcd6e552de3856676a3b59686f24 232 Gene3D G3DSA:2.40.10.220 15 113 1.0E-6 T 23-04-2016 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 SUPERFAMILY SSF53155 6 75 1.79E-9 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 70 151 1.5E-25 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 118 124 - T 23-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 PANTHER PTHR10815 44 153 2.8E-40 T 23-04-2016 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 SUPERFAMILY SSF46767 69 153 2.88E-26 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 71 153 5.2E-28 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 PANTHER PTHR10815:SF5 44 153 2.8E-40 T 23-04-2016 THIMO_RS07075 55a536dc956e4cf4aadf4c427a0db38f 157 Gene3D G3DSA:1.10.10.10 69 154 1.3E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS13860 7ea51f1a7775a9feeb01aed944ba45e2 488 SUPERFAMILY SSF88713 50 465 2.08E-54 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 13 419 51.033 T 23-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 SUPERFAMILY SSF51161 304 417 1.06E-18 T 23-04-2016 IPR011004 Trimeric LpxA-like THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 Gene3D G3DSA:3.90.550.10 339 380 2.6E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 Gene3D G3DSA:3.90.550.10 17 296 2.6E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 16 392 3.1E-152 T 23-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 210 220 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 22 41 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 112 120 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 Pfam PF00483 Nucleotidyl transferase 18 285 9.1E-63 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 SUPERFAMILY SSF53448 13 289 6.34E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 SUPERFAMILY SSF53448 356 372 6.34E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 PANTHER PTHR22572 17 392 1.6E-166 T 23-04-2016 THIMO_RS15805 340a46e9c884a6750eab65a38d96483c 426 PANTHER PTHR22572:SF10 17 392 1.6E-166 T 23-04-2016 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 PANTHER PTHR22749:SF0 1 309 3.7E-131 T 23-04-2016 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 Pfam PF06574 FAD synthetase 13 167 4.8E-51 T 23-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 Gene3D G3DSA:3.40.50.620 1 179 9.3E-67 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 PIRSF PIRSF004491 1 312 2.9E-100 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 Gene3D G3DSA:2.40.30.30 180 308 4.3E-39 T 23-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 SUPERFAMILY SSF82114 174 308 2.18E-44 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 SMART SM00904 183 308 3.8E-63 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 PANTHER PTHR22749 1 309 3.7E-131 T 23-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 307 1.3E-93 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 Pfam PF01687 Riboflavin kinase 184 307 6.7E-37 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 THIMO_RS05445 91f1204e93a48af3346a6fcd513ded45 316 SUPERFAMILY SSF52374 16 175 4.15E-32 T 23-04-2016 THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 SMART SM00382 39 220 2.3E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 SUPERFAMILY SSF52540 10 246 4.32E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 PANTHER PTHR24220:SF589 11 241 8.2E-89 T 23-04-2016 THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 Gene3D G3DSA:3.40.50.300 4 223 2.2E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 Pfam PF00005 ABC transporter 30 170 5.3E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS01085 a0d0e60866bed32371cea0e85b9f8200 258 PANTHER PTHR24220 11 241 8.2E-89 T 23-04-2016 THIMO_RS10155 eebdc75bca26d4e732d807c551226bca 192 Pfam PF11845 Protein of unknown function (DUF3365) 12 191 7.6E-27 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 THIMO_RS09130 05b823d83c841ba357bdc44ae1fc7935 74 SUPERFAMILY SSF47598 2 41 5.56E-5 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 PANTHER PTHR35561:SF1 3 173 9.0E-29 T 23-04-2016 THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 Pfam PF13563 2'-5' RNA ligase superfamily 28 151 2.1E-12 T 23-04-2016 THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 PANTHER PTHR35561 3 173 9.0E-29 T 23-04-2016 THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 Gene3D G3DSA:3.90.1140.10 4 173 3.8E-41 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 SUPERFAMILY SSF55144 4 172 5.58E-36 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 3 171 18.295 T 23-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 THIMO_RS11625 2277b6c22193735b86ea96d3a6cf9c47 181 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 4 171 1.5E-25 T 23-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 SMART SM00327 89 261 0.0063 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 SMART SM00028 405 438 0.0014 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 SUPERFAMILY SSF53300 93 279 1.83E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 PANTHER PTHR22550:SF5 3 527 2.0E-46 T 23-04-2016 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 SUPERFAMILY SSF48452 381 454 8.41E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 PANTHER PTHR22550 3 527 2.0E-46 T 23-04-2016 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 Gene3D G3DSA:1.25.40.10 652 675 4.8E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 Gene3D G3DSA:1.25.40.10 383 454 4.8E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS13940 d9b8818b8af5a010aa5d23e9f2944b70 689 Pfam PF13519 von Willebrand factor type A domain 93 200 6.7E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS18215 65512a2d40663f4ac765c41b894ad959 265 PANTHER PTHR19446:SF383 8 136 4.8E-30 T 23-04-2016 THIMO_RS18215 65512a2d40663f4ac765c41b894ad959 265 Pfam PF08388 Group II intron, maturase-specific domain 121 198 1.0E-25 T 23-04-2016 IPR013597 Group II intron, maturase-specific THIMO_RS18215 65512a2d40663f4ac765c41b894ad959 265 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 6 104 3.8E-19 T 23-04-2016 IPR000477 Reverse transcriptase domain THIMO_RS18215 65512a2d40663f4ac765c41b894ad959 265 SUPERFAMILY SSF56672 3 186 1.28E-20 T 23-04-2016 THIMO_RS18215 65512a2d40663f4ac765c41b894ad959 265 PANTHER PTHR19446 8 136 4.8E-30 T 23-04-2016 THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 Pfam PF00557 Metallopeptidase family M24 1 228 7.6E-56 T 23-04-2016 IPR000994 Peptidase M24, structural domain THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 PANTHER PTHR10804 1 241 2.6E-151 T 23-04-2016 THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 1 236 2.6E-98 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 154 172 - T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 Gene3D G3DSA:3.90.230.10 1 241 3.2E-97 T 23-04-2016 IPR000994 Peptidase M24, structural domain THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 PRINTS PR00599 Methionine aminopeptidase-1 signature 148 160 9.8E-23 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 PRINTS PR00599 Methionine aminopeptidase-1 signature 78 94 9.8E-23 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 PRINTS PR00599 Methionine aminopeptidase-1 signature 56 69 9.8E-23 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 PRINTS PR00599 Methionine aminopeptidase-1 signature 179 191 9.8E-23 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 PANTHER PTHR10804:SF75 1 241 2.6E-151 T 23-04-2016 THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 SUPERFAMILY SSF55920 1 238 6.93E-91 T 23-04-2016 IPR000994 Peptidase M24, structural domain THIMO_RS03440 bfe9a483b779504203c6a76569d5229f 247 Hamap MF_01974 Methionine aminopeptidase [map]. 1 237 39.5 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 THIMO_RS04830 969bb47e726662e4286cb85f047b95d4 531 SUPERFAMILY SSF48230 78 279 1.01E-18 T 23-04-2016 IPR008929 Chondroitin AC/alginate lyase THIMO_RS04830 969bb47e726662e4286cb85f047b95d4 531 Gene3D G3DSA:1.50.10.110 163 289 2.1E-6 T 23-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 THIMO_RS04830 969bb47e726662e4286cb85f047b95d4 531 PANTHER PTHR39210 51 491 2.3E-27 T 23-04-2016 THIMO_RS04830 969bb47e726662e4286cb85f047b95d4 531 Pfam PF16889 Heparinase II/III N-terminus 153 274 2.6E-15 T 23-04-2016 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 THIMO_RS04830 969bb47e726662e4286cb85f047b95d4 531 Pfam PF07940 Heparinase II/III-like protein 300 521 8.6E-53 T 23-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 THIMO_RS03740 a98e8bf09a78768b209bf833a45d373d 521 PANTHER PTHR35861 4 520 3.7E-129 T 23-04-2016 THIMO_RS03740 a98e8bf09a78768b209bf833a45d373d 521 Pfam PF04984 Phage tail sheath protein 5 514 1.9E-52 T 23-04-2016 IPR007067 Tail sheath protein THIMO_RS03740 a98e8bf09a78768b209bf833a45d373d 521 PANTHER PTHR35861:SF1 4 520 3.7E-129 T 23-04-2016 THIMO_RS08245 d06d43a62850ba72ee6a5633f7dedc6a 205 Pfam PF09626 Dihaem cytochrome c 65 190 2.1E-32 T 23-04-2016 IPR018588 Dihaem cytochrome c THIMO_RS04715 3d07916b087a4d65d1b5ef2be3b58606 217 SUPERFAMILY SSF52540 18 207 5.31E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04715 3d07916b087a4d65d1b5ef2be3b58606 217 Pfam PF00685 Sulfotransferase domain 21 196 3.5E-14 T 23-04-2016 IPR000863 Sulfotransferase domain GO:0008146 THIMO_RS04715 3d07916b087a4d65d1b5ef2be3b58606 217 Gene3D G3DSA:3.40.50.300 21 206 4.4E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07265 2ab7c186629930c3705f37c7e2e1faf0 62 Pfam PF05532 CsbD-like 4 56 7.4E-17 T 23-04-2016 IPR008462 CsbD-like THIMO_RS07265 2ab7c186629930c3705f37c7e2e1faf0 62 Gene3D G3DSA:1.10.1470.10 1 61 3.3E-25 T 23-04-2016 IPR008462 CsbD-like THIMO_RS07265 2ab7c186629930c3705f37c7e2e1faf0 62 PANTHER PTHR34977 1 62 1.9E-14 T 23-04-2016 THIMO_RS07265 2ab7c186629930c3705f37c7e2e1faf0 62 SUPERFAMILY SSF69047 1 60 7.72E-23 T 23-04-2016 IPR008462 CsbD-like THIMO_RS07265 2ab7c186629930c3705f37c7e2e1faf0 62 PIRSF PIRSF039008 1 62 1.2E-27 T 23-04-2016 IPR026042 Stress response protein YjbJ THIMO_RS18175 48c9153c0399c167fc162a5f38c1904e 89 Pfam PF02001 Protein of unknown function DUF134 3 87 1.5E-20 T 23-04-2016 IPR002852 Uncharacterised protein family UPF0251 THIMO_RS18175 48c9153c0399c167fc162a5f38c1904e 89 Gene3D G3DSA:1.10.10.10 37 81 4.7E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS18175 48c9153c0399c167fc162a5f38c1904e 89 PANTHER PTHR37478 1 89 3.1E-25 T 23-04-2016 THIMO_RS18175 48c9153c0399c167fc162a5f38c1904e 89 SUPERFAMILY SSF88659 35 81 3.62E-5 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 THIMO_RS18175 48c9153c0399c167fc162a5f38c1904e 89 PANTHER PTHR37478:SF1 1 89 3.1E-25 T 23-04-2016 THIMO_RS18175 48c9153c0399c167fc162a5f38c1904e 89 Hamap MF_00674 UPF0251 protein . 2 88 21.612 T 23-04-2016 IPR002852 Uncharacterised protein family UPF0251 THIMO_RS05965 807d392ec6f8cb347ee40250cf4276c6 398 SMART SM00257 39 87 8.4E-7 T 23-04-2016 IPR018392 LysM domain THIMO_RS05965 807d392ec6f8cb347ee40250cf4276c6 398 PANTHER PTHR34700 20 302 1.2E-46 T 23-04-2016 THIMO_RS05965 807d392ec6f8cb347ee40250cf4276c6 398 Pfam PF01476 LysM domain 40 86 1.5E-13 T 23-04-2016 IPR018392 LysM domain THIMO_RS05965 807d392ec6f8cb347ee40250cf4276c6 398 Gene3D G3DSA:3.10.350.10 39 86 2.4E-9 T 23-04-2016 IPR018392 LysM domain THIMO_RS05965 807d392ec6f8cb347ee40250cf4276c6 398 PANTHER PTHR34700:SF2 20 302 1.2E-46 T 23-04-2016 THIMO_RS05965 807d392ec6f8cb347ee40250cf4276c6 398 SUPERFAMILY SSF54106 38 87 1.22E-8 T 23-04-2016 IPR018392 LysM domain THIMO_RS08135 eef609a61956e3cc49b08156905466fc 481 PANTHER PTHR38075 9 481 2.1E-44 T 23-04-2016 THIMO_RS08135 eef609a61956e3cc49b08156905466fc 481 Pfam PF13598 Domain of unknown function (DUF4139) 191 480 1.1E-13 T 23-04-2016 IPR011935 Conserved hypothetical protein CHP02231 THIMO_RS15000 6bcc38ce3ea006c719d9e5d8bcdcff00 313 PANTHER PTHR24220:SF160 3 219 1.3E-82 T 23-04-2016 THIMO_RS15000 6bcc38ce3ea006c719d9e5d8bcdcff00 313 SMART SM00382 26 207 1.3E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS15000 6bcc38ce3ea006c719d9e5d8bcdcff00 313 PANTHER PTHR24220 3 219 1.3E-82 T 23-04-2016 THIMO_RS15000 6bcc38ce3ea006c719d9e5d8bcdcff00 313 Gene3D G3DSA:3.40.50.300 1 222 1.3E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15000 6bcc38ce3ea006c719d9e5d8bcdcff00 313 SUPERFAMILY SSF52540 2 222 5.99E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15000 6bcc38ce3ea006c719d9e5d8bcdcff00 313 Pfam PF00005 ABC transporter 18 161 7.5E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS15060 1a7e86a70ceb1bd392601de3084ec600 172 SUPERFAMILY SSF54523 5 152 1.8E-19 T 23-04-2016 THIMO_RS15060 1a7e86a70ceb1bd392601de3084ec600 172 Pfam PF12019 Type II transport protein GspH 40 162 1.4E-30 T 23-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 THIMO_RS15060 1a7e86a70ceb1bd392601de3084ec600 172 Gene3D G3DSA:3.30.700.10 5 68 5.1E-7 T 23-04-2016 THIMO_RS15060 1a7e86a70ceb1bd392601de3084ec600 172 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 2 24 5.3E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS15060 1a7e86a70ceb1bd392601de3084ec600 172 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 2 22 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 Pfam PF00410 Ribosomal protein S8 5 130 1.6E-44 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 30.222 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 Gene3D G3DSA:3.30.1370.30 2 72 3.5E-26 T 23-04-2016 THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 Gene3D G3DSA:3.30.1490.10 76 130 5.3E-26 T 23-04-2016 THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 PANTHER PTHR11758 1 131 1.7E-55 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 THIMO_RS13560 4a77fd902bcf360d007c2bf62dc37d9d 131 SUPERFAMILY SSF56047 2 130 3.4E-45 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 THIMO_RS16225 5f28a3c84bbd0ca62d81eb6737051d16 73 SUPERFAMILY SSF47598 3 54 2.45E-6 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 Gene3D G3DSA:1.25.40.20 71 210 6.0E-23 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 SUPERFAMILY SSF48403 4 210 3.73E-33 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 PANTHER PTHR24198 5 210 2.1E-32 T 23-04-2016 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 Gene3D G3DSA:1.25.40.20 5 70 6.3E-17 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 SMART SM00248 21 50 5.8E-4 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 SMART SM00248 57 86 2.1 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 SMART SM00248 187 216 320.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 SMART SM00248 154 183 2300.0 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 SMART SM00248 121 150 4.1 T 23-04-2016 IPR002110 Ankyrin repeat GO:0005515 THIMO_RS01065 a17e0da308ee5da5aadaffeffab75f4d 250 Pfam PF12796 Ankyrin repeats (3 copies) 4 85 7.8E-8 T 23-04-2016 IPR020683 Ankyrin repeat-containing domain THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 Gene3D G3DSA:3.40.50.620 7 162 7.1E-69 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 120 131 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 Pfam PF00764 Arginosuccinate synthase 10 400 6.4E-153 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 Gene3D G3DSA:1.20.5.470 379 400 1.6E-6 T 23-04-2016 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 401 6.6E-144 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 SUPERFAMILY SSF52402 7 211 2.65E-50 T 23-04-2016 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 Gene3D G3DSA:3.90.1260.10 163 362 1.2E-95 T 23-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 PANTHER PTHR11587 7 410 3.1E-234 T 23-04-2016 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 PANTHER PTHR11587:SF2 7 410 3.1E-234 T 23-04-2016 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 SUPERFAMILY SSF69864 180 404 9.42E-94 T 23-04-2016 THIMO_RS08085 9eda02aa78eaae61a18915a6edec5f36 410 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 406 52.048 T 23-04-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 200 206 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 Pfam PF05175 Methyltransferase small domain 124 210 8.5E-17 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 Gene3D G3DSA:3.40.50.150 103 285 3.5E-53 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 Gene3D G3DSA:1.10.8.10 10 101 1.8E-10 T 23-04-2016 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 PANTHER PTHR18895 10 296 2.7E-132 T 23-04-2016 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 8 291 3.1E-121 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 PIRSF PIRSF037167 2 303 4.9E-123 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 10 299 2.1E-78 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 PANTHER PTHR18895:SF66 10 296 2.7E-132 T 23-04-2016 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 1 296 49.788 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 THIMO_RS02005 eab148ffecb529f5827ed1392f8889fa 308 SUPERFAMILY SSF53335 11 290 1.52E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05695 698f7efd5d03f6a657e78b5592df5d2e 109 PANTHER PTHR34981:SF1 4 108 6.2E-22 T 23-04-2016 THIMO_RS05695 698f7efd5d03f6a657e78b5592df5d2e 109 SUPERFAMILY SSF102829 8 96 6.93E-22 T 23-04-2016 IPR007838 Cell division protein ZapA-like THIMO_RS05695 698f7efd5d03f6a657e78b5592df5d2e 109 PANTHER PTHR34981 4 108 6.2E-22 T 23-04-2016 THIMO_RS05695 698f7efd5d03f6a657e78b5592df5d2e 109 Pfam PF05164 Cell division protein ZapA 8 92 6.1E-23 T 23-04-2016 IPR007838 Cell division protein ZapA-like THIMO_RS07685 0a48b9d610c62a75efd2a1ea08b1d0d3 119 SUPERFAMILY SSF69754 1 100 4.45E-8 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS07685 0a48b9d610c62a75efd2a1ea08b1d0d3 119 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 96 4.3E-8 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS07685 0a48b9d610c62a75efd2a1ea08b1d0d3 119 Gene3D G3DSA:3.30.160.100 1 96 1.5E-7 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 126 151 1.9E-27 T 23-04-2016 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 271 292 1.9E-27 T 23-04-2016 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 293 319 1.9E-27 T 23-04-2016 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 360 372 1.9E-27 T 23-04-2016 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 PANTHER PTHR22773:SF46 123 476 6.6E-79 T 23-04-2016 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 121 171 8.1E-9 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 Pfam PF00361 Proton-conducting membrane transporter 186 457 2.3E-47 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS15995 bb7befa655137c5de16e1d43d7605326 644 PANTHER PTHR22773 123 476 6.6E-79 T 23-04-2016 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 Pfam PF00425 chorismate binding enzyme 199 452 1.3E-98 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 314 327 1.9E-18 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 394 408 1.9E-18 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 300 313 1.9E-18 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 409 423 1.9E-18 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PANTHER PTHR11236 6 461 1.0E-162 T 23-04-2016 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 105 456 5.2E-115 T 23-04-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 SUPERFAMILY SSF56322 11 461 2.75E-143 T 23-04-2016 IPR005801 ADC synthase GO:0009058 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 Pfam PF04715 Anthranilate synthase component I, N terminal region 17 156 5.7E-21 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 THIMO_RS15835 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 Gene3D G3DSA:3.60.120.10 11 461 9.8E-154 T 23-04-2016 IPR005801 ADC synthase GO:0009058 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 2.4E-98 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 1.8E-95 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 PANTHER PTHR30304 1 351 7.8E-122 T 23-04-2016 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 SUPERFAMILY SSF51569 3 328 2.93E-108 T 23-04-2016 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 PIRSF PIRSF001359 1 329 1.5E-83 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 2.3E-202 T 23-04-2016 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 THIMO_RS10410 50b3d8a1b74dbfce936dfaf39be94a52 354 Gene3D G3DSA:3.20.20.70 1 335 1.2E-110 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS01210 1f301406ee84420e908fcc06762294aa 333 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 63 209 1.9E-35 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 THIMO_RS01210 1f301406ee84420e908fcc06762294aa 333 SUPERFAMILY SSF52518 24 273 3.14E-74 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS01210 1f301406ee84420e908fcc06762294aa 333 PANTHER PTHR18968 12 275 1.1E-100 T 23-04-2016 THIMO_RS01210 1f301406ee84420e908fcc06762294aa 333 PANTHER PTHR18968:SF89 12 275 1.1E-100 T 23-04-2016 THIMO_RS01210 1f301406ee84420e908fcc06762294aa 333 Gene3D G3DSA:3.40.50.970 26 260 4.7E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS09445 be3de4c82300721ea7b64fdef71855bc 166 Pfam PF02600 Disulfide bond formation protein DsbB 7 158 9.9E-31 T 23-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 THIMO_RS09445 be3de4c82300721ea7b64fdef71855bc 166 SUPERFAMILY SSF158442 10 158 4.32E-28 T 23-04-2016 THIMO_RS09445 be3de4c82300721ea7b64fdef71855bc 166 PANTHER PTHR36570 7 162 9.4E-14 T 23-04-2016 THIMO_RS09445 be3de4c82300721ea7b64fdef71855bc 166 Gene3D G3DSA:1.20.1550.10 5 163 1.5E-37 T 23-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Gene3D G3DSA:1.20.120.160 743 840 5.9E-18 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SMART SM00448 578 695 9.3E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Gene3D G3DSA:1.10.287.130 175 244 3.3E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SUPERFAMILY SSF52172 577 705 1.99E-34 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PANTHER PTHR24423 577 742 6.0E-138 T 23-04-2016 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SMART SM00387 295 413 3.8E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SUPERFAMILY SSF47226 728 839 1.57E-16 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PANTHER PTHR24423 162 422 6.0E-138 T 23-04-2016 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SMART SM00388 183 248 2.0E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 411 1.2E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Gene3D G3DSA:3.30.565.10 249 417 4.0E-48 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PANTHER PTHR24423:SF382 162 422 6.0E-138 T 23-04-2016 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Pfam PF00512 His Kinase A (phospho-acceptor) domain 183 248 4.7E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SUPERFAMILY SSF55874 237 415 2.23E-47 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 SUPERFAMILY SSF47384 166 249 1.75E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Gene3D G3DSA:3.40.50.2300 577 706 3.7E-36 T 23-04-2016 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Pfam PF00072 Response regulator receiver domain 580 695 6.2E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 Pfam PF01627 Hpt domain 752 828 2.5E-7 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PANTHER PTHR24423:SF382 577 742 6.0E-138 T 23-04-2016 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 352 4.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 410 4.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 366 4.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS08065 1142831911c52f2dd72830327d7dae5d 856 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 391 4.6E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 THIMO_RS00735 b3dcef0d0e4f2be26b89ccab8171ee25 144 Gene3D G3DSA:3.90.10.10 73 124 7.5E-7 T 23-04-2016 THIMO_RS00735 b3dcef0d0e4f2be26b89ccab8171ee25 144 SUPERFAMILY SSF48695 37 120 2.56E-13 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS03040 adea4e2ee7e0f665de34592fa0a91f81 437 Pfam PF12704 MacB-like periplasmic core domain 72 276 1.3E-12 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS03040 adea4e2ee7e0f665de34592fa0a91f81 437 PANTHER PTHR30572 15 437 1.2E-121 T 23-04-2016 THIMO_RS03040 adea4e2ee7e0f665de34592fa0a91f81 437 Pfam PF02687 FtsX-like permease family 310 428 2.0E-11 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS03040 adea4e2ee7e0f665de34592fa0a91f81 437 PANTHER PTHR30572:SF12 15 437 1.2E-121 T 23-04-2016 THIMO_RS15005 4584c64c072db50104137b0fd6b9fc49 963 Pfam PF12679 ABC-2 family transporter protein 57 228 2.6E-11 T 23-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 THIMO_RS15005 4584c64c072db50104137b0fd6b9fc49 963 PANTHER PTHR30294 1 257 2.5E-54 T 23-04-2016 THIMO_RS15005 4584c64c072db50104137b0fd6b9fc49 963 Pfam PF09822 ABC-type uncharacterized transport system 277 429 2.1E-25 T 23-04-2016 IPR019196 ABC-type uncharacterised transport system THIMO_RS15005 4584c64c072db50104137b0fd6b9fc49 963 Pfam PF09822 ABC-type uncharacterized transport system 439 685 1.5E-30 T 23-04-2016 IPR019196 ABC-type uncharacterised transport system THIMO_RS15005 4584c64c072db50104137b0fd6b9fc49 963 PANTHER PTHR30294:SF5 1 257 2.5E-54 T 23-04-2016 THIMO_RS06055 84e2ce235470d96f14d9e4668d4eaae5 229 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 5 211 26.328 T 23-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 THIMO_RS06055 84e2ce235470d96f14d9e4668d4eaae5 229 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 8 209 1.7E-75 T 23-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 THIMO_RS06055 84e2ce235470d96f14d9e4668d4eaae5 229 PANTHER PTHR30586 1 221 3.1E-97 T 23-04-2016 THIMO_RS06055 84e2ce235470d96f14d9e4668d4eaae5 229 PANTHER PTHR30586:SF0 1 221 3.1E-97 T 23-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 THIMO_RS06055 84e2ce235470d96f14d9e4668d4eaae5 229 PIRSF PIRSF006102 1 218 4.5E-73 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS06055 84e2ce235470d96f14d9e4668d4eaae5 229 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 200 5.3E-59 T 23-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 THIMO_RS14020 204b822f98b3816fe57fa55031b2c52a 114 PANTHER PTHR31262:SF6 17 108 4.3E-28 T 23-04-2016 THIMO_RS14020 204b822f98b3816fe57fa55031b2c52a 114 Gene3D G3DSA:3.30.190.10 14 108 2.2E-38 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14020 204b822f98b3816fe57fa55031b2c52a 114 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 17 109 6.2E-38 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14020 204b822f98b3816fe57fa55031b2c52a 114 SMART SM00961 15 112 3.1E-43 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS14020 204b822f98b3816fe57fa55031b2c52a 114 PANTHER PTHR31262 17 108 4.3E-28 T 23-04-2016 THIMO_RS14020 204b822f98b3816fe57fa55031b2c52a 114 SUPERFAMILY SSF55239 9 109 2.36E-38 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS00275 2e4be23a855847f80005b54817738913 509 Gene3D G3DSA:3.60.110.10 223 475 6.0E-26 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS00275 2e4be23a855847f80005b54817738913 509 SUPERFAMILY SSF56317 224 482 7.06E-41 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS00275 2e4be23a855847f80005b54817738913 509 PANTHER PTHR38686 3 509 1.1E-96 T 23-04-2016 THIMO_RS00275 2e4be23a855847f80005b54817738913 509 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 490 22.614 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 THIMO_RS00275 2e4be23a855847f80005b54817738913 509 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 452 3.7E-96 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 THIMO_RS00275 2e4be23a855847f80005b54817738913 509 Pfam PF00795 Carbon-nitrogen hydrolase 229 471 2.2E-34 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 PANTHER PTHR10799:SF750 306 361 3.6E-34 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 PANTHER PTHR10799:SF750 400 527 3.6E-34 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 SUPERFAMILY SSF103190 35 204 4.51E-45 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 PANTHER PTHR10799 306 361 3.6E-34 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 PANTHER PTHR10799 400 527 3.6E-34 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 Gene3D G3DSA:3.30.70.270 367 526 1.1E-52 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 Gene3D G3DSA:3.30.450.20 73 204 5.4E-41 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 SMART SM00267 354 525 2.9E-56 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 SUPERFAMILY SSF55073 370 524 5.65E-48 T 23-04-2016 IPR029787 Nucleotide cyclase THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 SUPERFAMILY SSF103190 213 319 8.63E-23 T 23-04-2016 IPR029151 Periplasmic sensor domain-like THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 Gene3D G3DSA:3.30.450.20 213 321 3.1E-24 T 23-04-2016 THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 525 1.2E-48 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS04080 c019590635efd78f8a0836e770f81b44 531 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 521 6.9E-45 T 23-04-2016 IPR000160 GGDEF domain THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 Pfam PF00005 ABC transporter 18 165 9.8E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 SUPERFAMILY SSF52540 1 221 1.27E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 PANTHER PTHR24220 3 222 2.1E-109 T 23-04-2016 THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 PANTHER PTHR24220:SF470 3 222 2.1E-109 T 23-04-2016 THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 Gene3D G3DSA:3.40.50.300 1 221 1.3E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 7.7E-82 T 23-04-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 THIMO_RS17195 88833221984579ee24a5c08b9034e4b5 225 SMART SM00382 27 218 1.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 Pfam PF01565 FAD binding domain 58 196 1.2E-41 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 SUPERFAMILY SSF56176 21 233 9.35E-72 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 Gene3D G3DSA:3.30.43.10 19 111 2.5E-30 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 Gene3D G3DSA:1.10.45.10 434 474 9.6E-11 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 Pfam PF02913 FAD linked oxidases, C-terminal domain 232 472 9.4E-70 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 PANTHER PTHR11748 16 482 3.4E-207 T 23-04-2016 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 PANTHER PTHR11748:SF78 16 482 3.4E-207 T 23-04-2016 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 SUPERFAMILY SSF55103 206 476 1.8E-77 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 THIMO_RS09175 3d4583ad155207f8cfa8f74795f2adf2 498 Gene3D G3DSA:3.30.465.10 113 233 3.8E-35 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 THIMO_RS11690 6218c955108bdc846e235ec17af9a5e9 220 Gene3D G3DSA:2.50.20.10 38 209 2.4E-45 T 23-04-2016 THIMO_RS11690 6218c955108bdc846e235ec17af9a5e9 220 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 23 211 1.2E-15 T 23-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 THIMO_RS11690 6218c955108bdc846e235ec17af9a5e9 220 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 22 219 24.401 T 23-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 THIMO_RS11690 6218c955108bdc846e235ec17af9a5e9 220 SUPERFAMILY SSF89392 38 210 8.63E-40 T 23-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX THIMO_RS11690 6218c955108bdc846e235ec17af9a5e9 220 PANTHER PTHR35869 7 218 1.0E-39 T 23-04-2016 THIMO_RS11690 6218c955108bdc846e235ec17af9a5e9 220 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 47 209 5.3E-41 T 23-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like THIMO_RS06250 4061e3dd9bbd8d7a90b34ff9d6628d53 477 Pfam PF03600 Citrate transporter 53 416 4.1E-57 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 THIMO_RS06250 4061e3dd9bbd8d7a90b34ff9d6628d53 477 PANTHER PTHR10283:SF91 14 467 1.4E-149 T 23-04-2016 THIMO_RS06250 4061e3dd9bbd8d7a90b34ff9d6628d53 477 PANTHER PTHR10283 14 467 1.4E-149 T 23-04-2016 THIMO_RS14350 d408176347320feb3bdd4e523a6d2573 296 Pfam PF12291 Protein of unknown function (DUF3623) 1 253 1.6E-111 T 23-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative THIMO_RS14350 d408176347320feb3bdd4e523a6d2573 296 TIGRFAM TIGR03055 photo_alph_chp2: putative photosynthetic complex assembly protein 2 7 249 3.4E-91 T 23-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative THIMO_RS05735 0112d959e0637b8faa05a70329cd16a8 182 SUPERFAMILY SSF50324 3 174 5.23E-66 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 THIMO_RS05735 0112d959e0637b8faa05a70329cd16a8 182 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 THIMO_RS05735 0112d959e0637b8faa05a70329cd16a8 182 Gene3D G3DSA:3.90.80.10 3 174 1.9E-60 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 THIMO_RS05735 0112d959e0637b8faa05a70329cd16a8 182 Pfam PF00719 Inorganic pyrophosphatase 18 172 5.2E-53 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 THIMO_RS05735 0112d959e0637b8faa05a70329cd16a8 182 PANTHER PTHR10286 4 175 1.3E-66 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 THIMO_RS05735 0112d959e0637b8faa05a70329cd16a8 182 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.868 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 SUPERFAMILY SSF47473 34 184 1.05E-17 T 23-04-2016 IPR011992 EF-hand domain pair THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 Pfam PF13499 EF-hand domain pair 120 184 1.1E-7 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 Gene3D G3DSA:1.10.238.10 34 89 3.2E-7 T 23-04-2016 IPR011992 EF-hand domain pair THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 160 188 11.0 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 72 100 16.0 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 117 145 20.0 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 34 57 14.0 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 Gene3D G3DSA:1.10.238.10 132 188 2.6E-9 T 23-04-2016 IPR011992 EF-hand domain pair THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 Gene3D G3DSA:1.10.238.10 90 131 4.5E-9 T 23-04-2016 IPR011992 EF-hand domain pair THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 Pfam PF13202 EF hand 34 51 0.0035 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 Pfam PF13202 EF hand 76 92 2.1E-4 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 81 93 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 126 138 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 169 181 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site THIMO_RS08250 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 38 50 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site THIMO_RS10315 5b124329bf0a7792e6daf7c1c41f12c5 297 SUPERFAMILY SSF103481 199 287 6.41E-5 T 23-04-2016 THIMO_RS10315 5b124329bf0a7792e6daf7c1c41f12c5 297 SUPERFAMILY SSF103481 64 143 8.11E-7 T 23-04-2016 THIMO_RS09305 43feb2bb8c61ff18fd1ef0933c03e9ef 362 SUPERFAMILY SSF53756 2 357 3.31E-76 T 23-04-2016 THIMO_RS09305 43feb2bb8c61ff18fd1ef0933c03e9ef 362 PANTHER PTHR12526 1 358 2.0E-60 T 23-04-2016 THIMO_RS09305 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Gene3D G3DSA:3.40.50.2000 147 334 5.5E-30 T 23-04-2016 THIMO_RS09305 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Pfam PF13439 Glycosyltransferase Family 4 14 158 2.0E-16 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS09305 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Pfam PF00534 Glycosyl transferases group 1 179 335 5.0E-32 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS05220 faaf3b6b5e56a92b88699b1186762088 139 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 30 136 2.8E-28 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein THIMO_RS05220 faaf3b6b5e56a92b88699b1186762088 139 SUPERFAMILY SSF64076 17 138 1.18E-32 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein THIMO_RS05220 faaf3b6b5e56a92b88699b1186762088 139 PANTHER PTHR21192:SF3 28 138 7.1E-33 T 23-04-2016 THIMO_RS05220 faaf3b6b5e56a92b88699b1186762088 139 PANTHER PTHR21192 28 138 7.1E-33 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein THIMO_RS05220 faaf3b6b5e56a92b88699b1186762088 139 Gene3D G3DSA:3.40.1230.10 16 138 2.9E-36 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein THIMO_RS01570 303401252f6194ac7ecbf7e4a38661f7 113 PANTHER PTHR34405 2 91 1.5E-14 T 23-04-2016 THIMO_RS01570 303401252f6194ac7ecbf7e4a38661f7 113 Gene3D G3DSA:3.30.70.240 4 70 7.7E-16 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain THIMO_RS01570 303401252f6194ac7ecbf7e4a38661f7 113 Pfam PF09827 CRISPR associated protein Cas2 4 70 2.4E-13 T 23-04-2016 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 THIMO_RS01570 303401252f6194ac7ecbf7e4a38661f7 113 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 3 108 12.927 T 23-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 THIMO_RS01570 303401252f6194ac7ecbf7e4a38661f7 113 SUPERFAMILY SSF143430 2 72 3.27E-17 T 23-04-2016 THIMO_RS01570 303401252f6194ac7ecbf7e4a38661f7 113 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 5 70 3.8E-8 T 23-04-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 PANTHER PTHR33694 1 300 2.0E-130 T 23-04-2016 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 296 7.6E-119 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 7.9E-107 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 2 280 49.377 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 PANTHER PTHR33694:SF1 1 300 2.0E-130 T 23-04-2016 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 Gene3D G3DSA:3.30.1700.10 128 282 5.4E-59 T 23-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 SUPERFAMILY SSF54211 133 277 1.9E-51 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 SUPERFAMILY SSF54211 3 124 3.26E-42 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold THIMO_RS14745 86a62ce29fc4976a12f6d2ff97347401 303 Gene3D G3DSA:3.30.230.20 3 125 6.3E-46 T 23-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 THIMO_RS06470 fbfc0e18ff1d6070f55cfaceeecf3446 166 PANTHER PTHR30009:SF6 16 156 1.0E-27 T 23-04-2016 THIMO_RS06470 fbfc0e18ff1d6070f55cfaceeecf3446 166 PANTHER PTHR30009 16 156 1.0E-27 T 23-04-2016 THIMO_RS06470 fbfc0e18ff1d6070f55cfaceeecf3446 166 Pfam PF03918 Cytochrome C biogenesis protein 16 153 6.5E-48 T 23-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 PIRSF PIRSF000460 11 830 3.4E-231 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 PANTHER PTHR11468 22 830 0.0 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 PANTHER PTHR11468:SF3 22 830 0.0 T 23-04-2016 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 Gene3D G3DSA:3.40.50.2000 21 492 7.2E-198 T 23-04-2016 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 SUPERFAMILY SSF53756 18 828 0.0 T 23-04-2016 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 Pfam PF00343 Carbohydrate phosphorylase 113 823 0.0 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 668 680 - T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 23 823 0.0 T 23-04-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 THIMO_RS09160 ee1aaff7d99a8519562c4f6e881a5066 830 Gene3D G3DSA:3.40.50.2000 493 808 3.2E-134 T 23-04-2016 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 Pfam PF00589 Phage integrase family 115 283 2.7E-45 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 Gene3D G3DSA:1.10.443.10 116 290 1.2E-53 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 PANTHER PTHR30349:SF17 2 301 2.3E-126 T 23-04-2016 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 SUPERFAMILY SSF56349 12 290 2.0E-55 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 297 35.365 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 12 299 4.6E-109 T 23-04-2016 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 Gene3D G3DSA:1.10.150.130 10 102 4.6E-30 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 93 9.9E-25 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 THIMO_RS15590 475eea170c6ac5b296244126ac5207a6 301 PANTHER PTHR30349 2 301 2.3E-126 T 23-04-2016 THIMO_RS11735 027d9d40ccca0bb8cec38615e130eedc 185 ProDom PD010978 LATE EMBRYOGENESIS ABUNDANT DESICCATION SIMILAR PROTECTANT PROTEINS RELATED EMBRYOGENESIS-ABUNDANT EMBRYOGENESIS-LIKE 41 152 8.0E-5 T 23-04-2016 THIMO_RS11735 027d9d40ccca0bb8cec38615e130eedc 185 SMART SM00769 43 160 1.0E-8 T 23-04-2016 IPR013990 Water stress and hypersensitive response domain GO:0009269 THIMO_RS11735 027d9d40ccca0bb8cec38615e130eedc 185 Pfam PF03168 Late embryogenesis abundant protein 63 152 2.6E-10 T 23-04-2016 IPR004864 Late embryogenesis abundant protein, LEA-14 THIMO_RS11735 027d9d40ccca0bb8cec38615e130eedc 185 SUPERFAMILY SSF117070 24 163 2.09E-20 T 23-04-2016 THIMO_RS11735 027d9d40ccca0bb8cec38615e130eedc 185 Gene3D G3DSA:2.60.40.10 42 162 5.2E-13 T 23-04-2016 IPR013783 Immunoglobulin-like fold THIMO_RS02555 1044bfa21a8ed9ff6c9b53e8605412de 328 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 312 1.9E-93 T 23-04-2016 IPR007296 Domain of unknown function DUF403 THIMO_RS02555 1044bfa21a8ed9ff6c9b53e8605412de 328 PANTHER PTHR34595 1 325 7.3E-102 T 23-04-2016 THIMO_RS17075 13f4e77437e4484b26275627d1bacc43 242 PANTHER PTHR13754:SF13 3 240 4.1E-55 T 23-04-2016 THIMO_RS17075 13f4e77437e4484b26275627d1bacc43 242 SUPERFAMILY SSF56281 11 238 7.08E-36 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS17075 13f4e77437e4484b26275627d1bacc43 242 Gene3D G3DSA:3.60.15.10 16 228 4.1E-34 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS17075 13f4e77437e4484b26275627d1bacc43 242 SMART SM00849 23 209 9.7E-10 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS17075 13f4e77437e4484b26275627d1bacc43 242 PANTHER PTHR13754 3 240 4.1E-55 T 23-04-2016 THIMO_RS17075 13f4e77437e4484b26275627d1bacc43 242 Pfam PF00753 Metallo-beta-lactamase superfamily 25 175 4.0E-11 T 23-04-2016 IPR001279 Metallo-beta-lactamase THIMO_RS06375 845d443868d0c8235068e8a7b5dc4515 197 PANTHER PTHR30353:SF4 7 188 6.5E-22 T 23-04-2016 THIMO_RS06375 845d443868d0c8235068e8a7b5dc4515 197 PANTHER PTHR30353 7 188 6.5E-22 T 23-04-2016 IPR032818 DedA family THIMO_RS06375 845d443868d0c8235068e8a7b5dc4515 197 Pfam PF09335 SNARE associated Golgi protein 38 157 1.9E-13 T 23-04-2016 IPR032816 SNARE associated Golgi protein THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 7.2E-66 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 SUPERFAMILY SSF52096 6 316 2.03E-103 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 50.871 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 5.8E-50 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 5.8E-50 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 5.8E-50 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 5.8E-50 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 5.8E-50 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 5.8E-50 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PANTHER PTHR22855:SF42 1 318 1.3E-129 T 23-04-2016 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 4 317 1.5E-153 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 Gene3D G3DSA:3.90.226.10 59 280 2.5E-49 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS04450 b04d7238ca7dcba5495ceb396f7d4ae2 318 PANTHER PTHR22855 1 318 1.3E-129 T 23-04-2016 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 Pfam PF00406 Adenylate kinase 5 184 4.3E-55 T 23-04-2016 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 SUPERFAMILY SSF52540 1 214 3.15E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 Gene3D G3DSA:3.40.50.300 1 214 1.5E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 TIGRFAM TIGR01351 adk: adenylate kinase 2 184 2.0E-70 T 23-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.4E-15 T 23-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 32 46 7.1E-35 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 173 187 7.1E-35 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 4 17 7.1E-35 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 81 97 7.1E-35 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 156 171 7.1E-35 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 PANTHER PTHR23359 1 217 1.9E-102 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS04045 42b797b2986a48fc1f57a2c35d916b05 219 Hamap MF_00235 Adenylate kinase [adk]. 1 217 49.928 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 THIMO_RS17315 56293c578075b1acd7e32e68e22d602c 161 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 33 124 1.3E-18 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS17315 56293c578075b1acd7e32e68e22d602c 161 SUPERFAMILY SSF53146 21 138 4.19E-29 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS17315 56293c578075b1acd7e32e68e22d602c 161 PANTHER PTHR33937:SF1 23 155 1.1E-25 T 23-04-2016 THIMO_RS17315 56293c578075b1acd7e32e68e22d602c 161 Gene3D G3DSA:3.30.420.130 21 139 1.3E-34 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS17315 56293c578075b1acd7e32e68e22d602c 161 PANTHER PTHR33937 23 155 1.1E-25 T 23-04-2016 THIMO_RS04775 09c3df7dd9ec8ed19f2bc05b9533a32c 290 Pfam PF00535 Glycosyl transferase family 2 9 133 3.4E-10 T 23-04-2016 IPR001173 Glycosyltransferase 2-like THIMO_RS04775 09c3df7dd9ec8ed19f2bc05b9533a32c 290 SUPERFAMILY SSF53448 5 142 9.14E-18 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS04775 09c3df7dd9ec8ed19f2bc05b9533a32c 290 Gene3D G3DSA:3.90.550.10 7 128 1.1E-7 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16175 55c64e247a5ecfdc46c5951079729cca 145 Pfam PF07883 Cupin domain 62 131 2.8E-12 T 23-04-2016 IPR013096 Cupin 2, conserved barrel THIMO_RS16175 55c64e247a5ecfdc46c5951079729cca 145 Gene3D G3DSA:2.60.120.10 43 131 2.8E-16 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS16175 55c64e247a5ecfdc46c5951079729cca 145 SUPERFAMILY SSF51182 47 139 1.46E-18 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS04505 0388234b8c53766fabc5a7ede7effc4b 419 PANTHER PTHR10590 9 418 4.9E-132 T 23-04-2016 IPR008276 Concentrative nucleoside transporter GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 THIMO_RS04505 0388234b8c53766fabc5a7ede7effc4b 419 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 13 86 6.8E-23 T 23-04-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 THIMO_RS04505 0388234b8c53766fabc5a7ede7effc4b 419 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 213 417 2.6E-65 T 23-04-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 THIMO_RS04505 0388234b8c53766fabc5a7ede7effc4b 419 Pfam PF07670 Nucleoside recognition 106 201 9.6E-6 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 17 240 2.3E-63 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 90 104 - T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 SUPERFAMILY SSF51419 15 238 1.03E-72 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 PIRSF PIRSF004848 10 243 3.4E-64 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 Pfam PF01168 Alanine racemase, N-terminal domain 22 241 6.6E-30 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 PANTHER PTHR10146 1 241 7.6E-87 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 THIMO_RS03600 aea25639bf32bc454f7d412584be6988 243 Gene3D G3DSA:3.20.20.10 12 241 3.6E-83 T 23-04-2016 IPR029066 PLP-binding barrel THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 223 300 3.0E-21 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 PRINTS PR01374 Gram-negative bacterial tonB protein signature 217 238 1.6E-7 T 23-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 PRINTS PR01374 Gram-negative bacterial tonB protein signature 138 148 1.6E-7 T 23-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 PRINTS PR01374 Gram-negative bacterial tonB protein signature 238 256 1.6E-7 T 23-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 PANTHER PTHR33446:SF2 219 301 1.5E-18 T 23-04-2016 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 Gene3D G3DSA:3.30.1150.10 191 301 1.1E-25 T 23-04-2016 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 222 300 8.3E-19 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 SUPERFAMILY SSF74653 133 146 9.03E-24 T 23-04-2016 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 SUPERFAMILY SSF74653 198 300 9.03E-24 T 23-04-2016 THIMO_RS11940 72b7c78ed465e6ea826c6ab75c62374f 301 PANTHER PTHR33446 219 301 1.5E-18 T 23-04-2016 THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 SUPERFAMILY SSF101801 218 290 3.53E-11 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 SUPERFAMILY SSF103039 16 199 6.54E-9 T 23-04-2016 IPR028976 CheC-like domain THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 PANTHER PTHR30034 3 308 8.8E-71 T 23-04-2016 THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 PIRSF PIRSF002888 1 295 4.4E-63 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 Pfam PF02154 Flagellar motor switch protein FliM 3 199 1.5E-41 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 2 288 1.1E-65 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 PANTHER PTHR30034:SF0 3 308 8.8E-71 T 23-04-2016 THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 222 289 8.3E-13 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) THIMO_RS01330 6ca63bd01d33f283e5d918022d341775 330 Gene3D G3DSA:2.30.330.10 212 291 3.2E-7 T 23-04-2016 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 127 360 1.7E-28 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 PANTHER PTHR23321 58 251 7.7E-35 T 23-04-2016 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 SUPERFAMILY SSF51649 118 361 1.96E-67 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 SUPERFAMILY SSF54966 5 118 2.47E-16 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 PANTHER PTHR23321:SF19 58 251 7.7E-35 T 23-04-2016 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 Gene3D G3DSA:3.30.70.150 10 118 9.5E-9 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS13370 43a4bb7f66320d1680768ff66e40bc6f 384 Gene3D G3DSA:3.20.20.110 120 363 6.5E-56 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS09905 82ed9d2fe5c04c65f6990b172d90f6f9 162 SUPERFAMILY SSF141523 2 54 7.85E-24 T 23-04-2016 THIMO_RS09905 82ed9d2fe5c04c65f6990b172d90f6f9 162 SUPERFAMILY SSF141523 82 155 7.85E-24 T 23-04-2016 THIMO_RS09905 82ed9d2fe5c04c65f6990b172d90f6f9 162 Pfam PF03734 L,D-transpeptidase catalytic domain 2 154 2.8E-17 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS09905 82ed9d2fe5c04c65f6990b172d90f6f9 162 Gene3D G3DSA:2.40.440.10 2 155 3.7E-25 T 23-04-2016 THIMO_RS09905 82ed9d2fe5c04c65f6990b172d90f6f9 162 PANTHER PTHR30582 3 155 5.4E-12 T 23-04-2016 THIMO_RS11025 2d8737cdc1750d427a511dfa75367df9 285 Pfam PF00069 Protein kinase domain 10 270 2.6E-29 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS11025 2d8737cdc1750d427a511dfa75367df9 285 Gene3D G3DSA:3.30.200.20 5 100 7.3E-7 T 23-04-2016 THIMO_RS11025 2d8737cdc1750d427a511dfa75367df9 285 Gene3D G3DSA:1.10.510.10 101 272 1.1E-36 T 23-04-2016 THIMO_RS11025 2d8737cdc1750d427a511dfa75367df9 285 PANTHER PTHR24362 5 272 3.1E-46 T 23-04-2016 THIMO_RS11025 2d8737cdc1750d427a511dfa75367df9 285 SMART SM00220 2 275 2.7E-14 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS11025 2d8737cdc1750d427a511dfa75367df9 285 SUPERFAMILY SSF56112 6 272 6.47E-48 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 102 120 - T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 PIRSF PIRSF004681 1 141 3.1E-37 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 SUPERFAMILY SSF111038 1 141 3.53E-43 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 PANTHER PTHR30615 1 142 1.6E-40 T 23-04-2016 THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 8 141 2.7E-34 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 Pfam PF01894 Uncharacterised protein family UPF0047 20 137 8.4E-36 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS04215 893634d7797960312582d8f3827f49f6 142 Gene3D G3DSA:2.60.120.460 1 141 1.2E-43 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PRINTS PR00113 Alkaline phosphatase signature 253 282 4.9E-11 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PRINTS PR00113 Alkaline phosphatase signature 28 48 4.9E-11 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PRINTS PR00113 Alkaline phosphatase signature 130 150 4.9E-11 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PANTHER PTHR11596 28 371 7.6E-92 T 23-04-2016 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PANTHER PTHR11596 422 496 7.6E-92 T 23-04-2016 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PANTHER PTHR11596:SF5 28 371 7.6E-92 T 23-04-2016 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 PANTHER PTHR11596:SF5 422 496 7.6E-92 T 23-04-2016 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 Gene3D G3DSA:3.40.720.10 14 385 6.1E-112 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 Gene3D G3DSA:3.40.720.10 438 496 6.1E-112 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 Pfam PF00245 Alkaline phosphatase 29 495 1.2E-66 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 SUPERFAMILY SSF53649 18 345 3.93E-98 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 SUPERFAMILY SSF53649 447 496 3.93E-98 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS05295 1b8f10d08664a1460331edd138857f07 503 SMART SM00098 29 497 2.8E-39 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 THIMO_RS17275 5a50899d246a1e3803729c144956bcfd 178 Pfam PF03843 Outer membrane lipoprotein Slp family 17 167 5.9E-48 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 THIMO_RS17275 5a50899d246a1e3803729c144956bcfd 178 PIRSF PIRSF004982 1 178 2.2E-50 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 THIMO_RS17275 5a50899d246a1e3803729c144956bcfd 178 PANTHER PTHR37530 1 178 2.6E-38 T 23-04-2016 THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 Pfam PF02381 MraZ protein, putative antitoxin-like 2 74 2.0E-16 T 23-04-2016 IPR020603 MraZ domain THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 Pfam PF02381 MraZ protein, putative antitoxin-like 77 133 9.2E-16 T 23-04-2016 IPR020603 MraZ domain THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 SUPERFAMILY SSF89447 2 136 1.04E-44 T 23-04-2016 THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 PANTHER PTHR34701 2 150 3.3E-56 T 23-04-2016 THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 135 9.4E-44 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 151 50.814 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 THIMO_RS14825 bad6235d9923ea24cd3c2e631d228d1c 151 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 129 2.0E-37 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 THIMO_RS15480 ad5c0135f5553514898181a6d2e76b63 190 Pfam PF04891 NifQ 30 187 1.3E-59 T 23-04-2016 IPR006975 NifQ GO:0009399|GO:0030151 THIMO_RS15090 a1d6107668d8bede3bc5a66fafa1a5af 278 PANTHER PTHR34322:SF1 2 212 3.8E-41 T 23-04-2016 THIMO_RS15090 a1d6107668d8bede3bc5a66fafa1a5af 278 Pfam PF01797 Transposase IS200 like 13 120 3.4E-11 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15090 a1d6107668d8bede3bc5a66fafa1a5af 278 SUPERFAMILY SSF143422 1 129 5.1E-25 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15090 a1d6107668d8bede3bc5a66fafa1a5af 278 Gene3D G3DSA:3.30.70.1290 13 126 6.4E-12 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15090 a1d6107668d8bede3bc5a66fafa1a5af 278 SMART SM01321 9 123 5.2E-40 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 THIMO_RS15090 a1d6107668d8bede3bc5a66fafa1a5af 278 PANTHER PTHR34322 2 212 3.8E-41 T 23-04-2016 THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 SUPERFAMILY SSF55486 19 150 2.34E-41 T 23-04-2016 THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 23-04-2016 IPR020549 Endoribonuclease YbeY, conserved site THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 PANTHER PTHR22881 5 150 1.3E-48 T 23-04-2016 THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 Pfam PF02130 Uncharacterized protein family UPF0054 24 143 3.8E-33 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 148 21.967 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 Gene3D G3DSA:3.40.390.30 17 152 1.8E-44 T 23-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 THIMO_RS03200 48fda9da051f2e070349fd92cdba80ba 162 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 38 144 1.3E-32 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Gene3D G3DSA:2.30.140.10 5 58 2.1E-19 T 23-04-2016 THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Pfam PF01564 Spermine/spermidine synthase 7 242 3.5E-64 T 23-04-2016 THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 SUPERFAMILY SSF53335 5 280 9.39E-78 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 TIGRFAM TIGR00417 speE: spermidine synthase 7 277 8.1E-81 T 23-04-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 83 96 - T 23-04-2016 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 PANTHER PTHR11558 5 280 3.0E-103 T 23-04-2016 THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Gene3D G3DSA:3.40.50.150 62 280 9.6E-72 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS00455 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 281 35.66 T 23-04-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 THIMO_RS14955 3c5d48d271bba5431a8a6af1b1b134eb 111 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 16 103 4.2E-25 T 23-04-2016 IPR009241 Toxin HigB-like THIMO_RS15165 75c61d248299c2721004c03820cd5d28 117 SUPERFAMILY SSF57362 32 87 1.42E-10 T 23-04-2016 IPR002223 Pancreatic trypsin inhibitor Kunitz domain GO:0004867 THIMO_RS15165 75c61d248299c2721004c03820cd5d28 117 Pfam PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain 37 86 8.8E-8 T 23-04-2016 IPR002223 Pancreatic trypsin inhibitor Kunitz domain GO:0004867 THIMO_RS15165 75c61d248299c2721004c03820cd5d28 117 Gene3D G3DSA:4.10.410.10 36 87 3.2E-10 T 23-04-2016 IPR002223 Pancreatic trypsin inhibitor Kunitz domain GO:0004867 THIMO_RS03285 8fe539f326995ce1d8d92cf26a6bb434 224 PANTHER PTHR31801:SF0 2 220 4.1E-71 T 23-04-2016 THIMO_RS03285 8fe539f326995ce1d8d92cf26a6bb434 224 Pfam PF01987 Mitochondrial biogenesis AIM24 3 209 2.3E-57 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 THIMO_RS03285 8fe539f326995ce1d8d92cf26a6bb434 224 Gene3D G3DSA:3.60.160.10 2 222 7.1E-69 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 THIMO_RS03285 8fe539f326995ce1d8d92cf26a6bb434 224 PANTHER PTHR31801 2 220 4.1E-71 T 23-04-2016 THIMO_RS03285 8fe539f326995ce1d8d92cf26a6bb434 224 SUPERFAMILY SSF51219 2 223 1.2E-62 T 23-04-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain THIMO_RS03285 8fe539f326995ce1d8d92cf26a6bb434 224 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 1 223 3.3E-53 T 23-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF00361 Proton-conducting membrane transporter 126 404 1.0E-62 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 113 6.6E-11 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PANTHER PTHR22773 1 575 1.5E-218 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF13244 Domain of unknown function (DUF4040) 610 674 1.2E-15 T 23-04-2016 IPR025383 Domain of unknown function DUF4040 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 3.1E-36 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 3.1E-36 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 3.1E-36 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.1E-36 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 3.1E-36 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 3.1E-36 T 23-04-2016 THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 788 911 3.8E-33 T 23-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein THIMO_RS08555 ec14a5f313047621c1d3037d4d6ede27 932 PANTHER PTHR22773:SF46 1 575 1.5E-218 T 23-04-2016 THIMO_RS06640 b3ae3d29d0c7f35ac164e6f6e9d349e1 327 Pfam PF05235 CHAD domain 31 245 9.9E-36 T 23-04-2016 IPR007899 CHAD domain THIMO_RS06640 b3ae3d29d0c7f35ac164e6f6e9d349e1 327 SMART SM00880 15 278 3.1E-33 T 23-04-2016 IPR007899 CHAD domain THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 4.5E-19 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 SUPERFAMILY SSF54736 55 126 1.36E-25 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 126 2.0E-19 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 Gene3D G3DSA:3.30.1390.10 54 126 6.7E-34 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 1.5E-49 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 SUPERFAMILY SSF48300 4 62 3.14E-17 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 126 25.544 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 8.3E-31 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 THIMO_RS13670 170aac55d599dd5a8e4c565e46eb48dd 126 Gene3D G3DSA:1.20.5.710 2 51 1.1E-22 T 23-04-2016 THIMO_RS08790 c4b6520ea38acda7105be5149fced618 141 PANTHER PTHR35303:SF1 5 119 2.7E-43 T 23-04-2016 THIMO_RS08790 c4b6520ea38acda7105be5149fced618 141 PANTHER PTHR35303 5 119 2.7E-43 T 23-04-2016 THIMO_RS08790 c4b6520ea38acda7105be5149fced618 141 Pfam PF06155 Protein of unknown function (DUF971) 10 94 1.9E-28 T 23-04-2016 IPR010376 Domain of unknown function DUF971 Reactome: REACT_13|UniPathway: UPA00118 THIMO_RS05530 5755055f21ae73c256b16c99bde92ee5 222 Gene3D G3DSA:1.10.3290.10 108 184 2.4E-4 T 23-04-2016 IPR003812 Fido domain THIMO_RS05530 5755055f21ae73c256b16c99bde92ee5 222 SUPERFAMILY SSF140931 109 181 4.05E-6 T 23-04-2016 IPR003812 Fido domain THIMO_RS16245 f2563cf703527e1aa504b1270863f6f9 129 Pfam PF05168 HEPN domain 6 122 2.8E-13 T 23-04-2016 IPR007842 HEPN domain THIMO_RS16245 f2563cf703527e1aa504b1270863f6f9 129 Gene3D G3DSA:1.20.120.330 5 125 1.1E-22 T 23-04-2016 THIMO_RS16245 f2563cf703527e1aa504b1270863f6f9 129 PANTHER PTHR36565:SF1 7 125 1.3E-17 T 23-04-2016 THIMO_RS16245 f2563cf703527e1aa504b1270863f6f9 129 PANTHER PTHR36565 7 125 1.3E-17 T 23-04-2016 THIMO_RS11635 07d580a4bc51043049bcce1d6ad7eafa 93 Pfam PF05899 Protein of unknown function (DUF861) 20 90 2.6E-28 T 23-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 THIMO_RS11635 07d580a4bc51043049bcce1d6ad7eafa 93 Gene3D G3DSA:2.60.120.10 6 91 7.0E-31 T 23-04-2016 IPR014710 RmlC-like jelly roll fold THIMO_RS11635 07d580a4bc51043049bcce1d6ad7eafa 93 PANTHER PTHR33271 2 92 1.1E-34 T 23-04-2016 THIMO_RS11635 07d580a4bc51043049bcce1d6ad7eafa 93 SUPERFAMILY SSF51182 16 90 2.3E-17 T 23-04-2016 IPR011051 RmlC-like cupin domain THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 Gene3D G3DSA:1.10.10.10 123 218 7.9E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 PANTHER PTHR26402:SF279 1 218 1.5E-84 T 23-04-2016 THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 215 2.7E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 PANTHER PTHR26402 1 218 1.5E-84 T 23-04-2016 THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 SUPERFAMILY SSF52172 1 176 3.84E-36 T 23-04-2016 IPR011006 CheY-like superfamily THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 SMART SM00448 1 112 1.2E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 Pfam PF00072 Response regulator receiver domain 3 112 6.9E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 Gene3D G3DSA:3.40.50.2300 1 122 2.6E-34 T 23-04-2016 THIMO_RS08225 332369fe738588e34adf2bdaa720762e 221 SMART SM00862 145 216 5.4E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 THIMO_RS01230 b9d3158754175227c6ebcc110c27d425 344 Gene3D G3DSA:1.10.1060.10 192 311 1.5E-11 T 23-04-2016 THIMO_RS01230 b9d3158754175227c6ebcc110c27d425 344 SUPERFAMILY SSF46548 206 305 2.49E-13 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS01230 b9d3158754175227c6ebcc110c27d425 344 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 286 297 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01230 b9d3158754175227c6ebcc110c27d425 344 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 219 230 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01230 b9d3158754175227c6ebcc110c27d425 344 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 81 185 5.2E-6 T 23-04-2016 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal THIMO_RS01230 b9d3158754175227c6ebcc110c27d425 344 Pfam PF13183 4Fe-4S dicluster domain 216 300 3.3E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS05855 e1c37e43162515e807af932a8d31f827 156 Gene3D G3DSA:3.90.960.10 5 146 3.2E-19 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS05855 e1c37e43162515e807af932a8d31f827 156 SUPERFAMILY SSF55826 5 147 3.27E-26 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS05855 e1c37e43162515e807af932a8d31f827 156 Pfam PF04073 Aminoacyl-tRNA editing domain 26 142 3.9E-17 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 PANTHER PTHR30204 1 133 1.8E-41 T 23-04-2016 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 Pfam PF09278 MerR, DNA binding 47 111 4.2E-22 T 23-04-2016 IPR015358 Transcription regulator MerR, DNA binding THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 Pfam PF00376 MerR family regulatory protein 5 42 3.7E-16 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 SMART SM00422 4 73 2.2E-32 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 PANTHER PTHR30204:SF16 1 133 1.8E-41 T 23-04-2016 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 SUPERFAMILY SSF46955 4 128 2.31E-37 T 23-04-2016 IPR009061 Putative DNA-binding domain THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 29 - T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 1.0E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 1.0E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 1.0E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 Gene3D G3DSA:1.10.1660.10 4 58 1.5E-27 T 23-04-2016 THIMO_RS16135 9abbe89001f2a43053e5cb26063e3361 136 Gene3D G3DSA:1.10.1660.10 59 135 1.5E-29 T 23-04-2016 THIMO_RS15485 910b6a9062ea99c601c8332c31a84cee 314 TIGRFAM TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase 22 309 1.3E-118 T 23-04-2016 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase THIMO_RS15485 910b6a9062ea99c601c8332c31a84cee 314 SUPERFAMILY SSF101478 24 292 1.7E-66 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 THIMO_RS15485 910b6a9062ea99c601c8332c31a84cee 314 PANTHER PTHR16222:SF12 22 291 4.8E-49 T 23-04-2016 THIMO_RS15485 910b6a9062ea99c601c8332c31a84cee 314 Pfam PF03747 ADP-ribosylglycohydrolase 28 284 2.3E-55 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 THIMO_RS15485 910b6a9062ea99c601c8332c31a84cee 314 PANTHER PTHR16222 22 291 4.8E-49 T 23-04-2016 THIMO_RS10570 3644b8c69754071fe70fc940b78c42fa 285 PANTHER PTHR10584:SF177 1 282 5.3E-77 T 23-04-2016 THIMO_RS10570 3644b8c69754071fe70fc940b78c42fa 285 SUPERFAMILY SSF53613 1 280 7.95E-46 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS10570 3644b8c69754071fe70fc940b78c42fa 285 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 239 252 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 THIMO_RS10570 3644b8c69754071fe70fc940b78c42fa 285 Gene3D G3DSA:3.40.1190.20 1 280 3.3E-56 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS10570 3644b8c69754071fe70fc940b78c42fa 285 PANTHER PTHR10584 1 282 5.3E-77 T 23-04-2016 THIMO_RS10570 3644b8c69754071fe70fc940b78c42fa 285 Pfam PF00294 pfkB family carbohydrate kinase 5 281 3.0E-28 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB THIMO_RS15145 be72cb957cb04e40b04acfabfc4b155e 207 Pfam PF01618 MotA/TolQ/ExbB proton channel family 88 191 4.8E-25 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 THIMO_RS15145 be72cb957cb04e40b04acfabfc4b155e 207 PANTHER PTHR30625 1 203 2.6E-24 T 23-04-2016 THIMO_RS08235 86b386f965c8567396d4e69c4e6bb66f 204 Pfam PF01292 Prokaryotic cytochrome b561 22 197 2.2E-20 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS08235 86b386f965c8567396d4e69c4e6bb66f 204 Gene3D G3DSA:1.20.950.20 50 201 1.8E-8 T 23-04-2016 THIMO_RS08235 86b386f965c8567396d4e69c4e6bb66f 204 SUPERFAMILY SSF81342 18 200 1.7E-34 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS08540 407a2c7d5b44f8ead3ffa4593a1fa644 161 PIRSF PIRSF019239 1 161 1.2E-46 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 THIMO_RS08540 407a2c7d5b44f8ead3ffa4593a1fa644 161 PANTHER PTHR34584:SF1 3 161 2.4E-44 T 23-04-2016 THIMO_RS08540 407a2c7d5b44f8ead3ffa4593a1fa644 161 Pfam PF01899 Na+/H+ ion antiporter subunit 13 159 3.5E-44 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 THIMO_RS08540 407a2c7d5b44f8ead3ffa4593a1fa644 161 PANTHER PTHR34584 3 161 2.4E-44 T 23-04-2016 THIMO_RS12475 745eac67e2ff3d77d16e69a559585f02 170 SUPERFAMILY SSF52949 4 168 8.92E-60 T 23-04-2016 THIMO_RS12475 745eac67e2ff3d77d16e69a559585f02 170 Gene3D G3DSA:3.40.220.10 4 167 6.8E-65 T 23-04-2016 THIMO_RS12475 745eac67e2ff3d77d16e69a559585f02 170 PANTHER PTHR11106 9 167 2.3E-80 T 23-04-2016 THIMO_RS12475 745eac67e2ff3d77d16e69a559585f02 170 SMART SM00506 4 133 1.2E-44 T 23-04-2016 IPR002589 Macro domain THIMO_RS12475 745eac67e2ff3d77d16e69a559585f02 170 Pfam PF01661 Macro domain 21 133 3.5E-41 T 23-04-2016 IPR002589 Macro domain THIMO_RS04755 7878981492877e5562bf3f6735961617 419 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 94 144 7.9E-16 T 23-04-2016 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain THIMO_RS04755 7878981492877e5562bf3f6735961617 419 Pfam PF01610 Transposase 159 393 8.2E-72 T 23-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain THIMO_RS04755 7878981492877e5562bf3f6735961617 419 PANTHER PTHR33498 1 410 6.2E-53 T 23-04-2016 THIMO_RS04755 7878981492877e5562bf3f6735961617 419 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 44 88 4.9E-14 T 23-04-2016 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger THIMO_RS04755 7878981492877e5562bf3f6735961617 419 PANTHER PTHR33498:SF1 1 410 6.2E-53 T 23-04-2016 THIMO_RS16600 b44a60b5e66cd0c3033bf6da313bdb6c 424 PIRSF PIRSF006060 1 422 1.9E-48 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 THIMO_RS16600 b44a60b5e66cd0c3033bf6da313bdb6c 424 PANTHER PTHR11785 407 422 2.9E-58 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 THIMO_RS16600 b44a60b5e66cd0c3033bf6da313bdb6c 424 PANTHER PTHR11785 12 365 2.9E-58 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 THIMO_RS16600 b44a60b5e66cd0c3033bf6da313bdb6c 424 Pfam PF13520 Amino acid permease 11 361 2.9E-33 T 23-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 Gene3D G3DSA:3.40.50.300 24 266 1.2E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 26 245 5.6E-24 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 Gene3D G3DSA:3.40.50.880 287 480 1.1E-24 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 PANTHER PTHR21343:SF1 21 523 1.5E-188 T 23-04-2016 THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 SUPERFAMILY SSF52317 289 485 1.39E-32 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 26 518 1.2E-121 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 PANTHER PTHR21343 21 523 1.5E-188 T 23-04-2016 THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 SUPERFAMILY SSF52540 24 271 3.28E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 288 476 1.4E-52 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS02285 97fe6aeb1bbd56f220829f1782a8883e 524 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 524 185.732 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 THIMO_RS10230 803624984397d0fb3d117529550bf65a 119 Pfam PF01355 High potential iron-sulfur protein 48 114 1.0E-21 T 23-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 THIMO_RS10230 803624984397d0fb3d117529550bf65a 119 SUPERFAMILY SSF57652 37 115 5.23E-24 T 23-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 THIMO_RS10230 803624984397d0fb3d117529550bf65a 119 Gene3D G3DSA:4.10.490.10 41 115 1.3E-20 T 23-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 THIMO_RS13125 9d0be98890d4685bdc8c85779228e56c 158 Pfam PF02470 MlaD protein 39 118 1.4E-23 T 23-04-2016 IPR003399 Mce/MlaD THIMO_RS13125 9d0be98890d4685bdc8c85779228e56c 158 PANTHER PTHR33371 1 148 4.7E-36 T 23-04-2016 THIMO_RS13125 9d0be98890d4685bdc8c85779228e56c 158 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 149 4.4E-56 T 23-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 236 2.5E-97 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 PANTHER PTHR21499 6 238 2.2E-111 T 23-04-2016 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 44.894 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 Pfam PF00696 Amino acid kinase family 8 216 3.3E-27 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 Gene3D G3DSA:3.40.1160.10 5 237 8.3E-82 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 PIRSF PIRSF005650 2 240 1.2E-91 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 PANTHER PTHR21499:SF23 6 238 2.2E-111 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 THIMO_RS03455 58d3d1794819a434527d16a9d0fa6a6b 240 SUPERFAMILY SSF53633 6 236 6.68E-71 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 THIMO_RS02380 a4afc0d0123efe5e57ede45a3d6c0e7a 371 PANTHER PTHR33529 1 362 2.9E-70 T 23-04-2016 THIMO_RS02380 a4afc0d0123efe5e57ede45a3d6c0e7a 371 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 349 1.2E-59 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 THIMO_RS02380 a4afc0d0123efe5e57ede45a3d6c0e7a 371 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 347 7.7E-90 T 23-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 THIMO_RS02380 a4afc0d0123efe5e57ede45a3d6c0e7a 371 PANTHER PTHR33529:SF2 1 362 2.9E-70 T 23-04-2016 THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 SUPERFAMILY SSF56436 185 425 1.13E-68 T 23-04-2016 IPR016187 C-type lectin fold THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 Pfam PF03781 Sulfatase-modifying factor enzyme 1 191 423 3.7E-31 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 SUPERFAMILY SSF109854 11 150 6.87E-6 T 23-04-2016 THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 PANTHER PTHR23150 14 423 1.0E-108 T 23-04-2016 THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 15 423 1.6E-166 T 23-04-2016 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255|UniPathway: UPA01014 THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 PANTHER PTHR23150:SF24 14 423 1.0E-108 T 23-04-2016 THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 Pfam PF12867 DinB superfamily 18 153 6.6E-7 T 23-04-2016 IPR024775 DinB-like domain THIMO_RS00030 71ac247ae70fd5d5f58ef7d0921adf42 426 Gene3D G3DSA:3.90.1580.10 181 425 1.2E-58 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 2 104 2.8E-31 T 23-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 Pfam PF13534 4Fe-4S dicluster domain 140 213 3.4E-10 T 23-04-2016 THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 Gene3D G3DSA:1.10.1060.10 100 228 2.6E-47 T 23-04-2016 THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 PANTHER PTHR11921 1 227 4.5E-120 T 23-04-2016 THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 Gene3D G3DSA:3.10.20.30 1 99 1.0E-34 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 141 152 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 SUPERFAMILY SSF46548 100 229 2.79E-37 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 5 222 2.6E-79 T 23-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 THIMO_RS02210 589acc11a8bd7bd5cd31984cc5666d41 230 SUPERFAMILY SSF54292 2 99 1.15E-27 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS06165 d54336047577e65047921d762de5d24d 389 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 205 382 2.8E-53 T 23-04-2016 IPR024534 Domain of unknown function DUF2220 THIMO_RS06165 d54336047577e65047921d762de5d24d 389 PIRSF PIRSF028408 5 389 3.2E-67 T 23-04-2016 IPR014544 Uncharacterised conserved protein UCP028408 THIMO_RS06165 d54336047577e65047921d762de5d24d 389 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 9 189 8.6E-52 T 23-04-2016 IPR024537 Domain of unknown function DUF3322 THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 PANTHER PTHR10072 1 108 5.8E-39 T 23-04-2016 THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 108 5.0E-34 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 SUPERFAMILY SSF89360 1 97 1.15E-28 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 89 106 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 PANTHER PTHR10072:SF48 1 108 5.8E-39 T 23-04-2016 IPR031108 FeS assembly protein IscA-like GO:0005198|GO:0016226|GO:0051536 THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 Gene3D G3DSA:2.60.300.12 2 97 1.6E-30 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS15715 ae342d801aefd279cd14a254c3fc1210 108 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 104 2.3E-17 T 23-04-2016 IPR000361 FeS cluster biogenesis THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 PIRSF PIRSF002191 1 114 9.6E-50 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 SUPERFAMILY SSF50104 2 113 1.1E-46 T 23-04-2016 IPR008991 Translation protein SH3-like domain THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 PRINTS PR00061 Ribosomal protein L19 signature 88 113 5.3E-40 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 PRINTS PR00061 Ribosomal protein L19 signature 4 33 5.3E-40 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 PRINTS PR00061 Ribosomal protein L19 signature 34 63 5.3E-40 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 23-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 Pfam PF01245 Ribosomal protein L19 3 113 2.1E-49 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 PANTHER PTHR15680 1 114 3.6E-53 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.041 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10195 687321957a6456ce918bec5468888ae0 114 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 5.1E-49 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 SUPERFAMILY SSF111369 76 317 1.2E-61 T 23-04-2016 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 PANTHER PTHR30158 19 396 1.6E-121 T 23-04-2016 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 Gene3D G3DSA:2.40.50.100 195 228 3.2E-19 T 23-04-2016 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 Gene3D G3DSA:2.40.50.100 87 120 3.2E-19 T 23-04-2016 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 PANTHER PTHR30158:SF3 19 396 1.6E-121 T 23-04-2016 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 62 392 1.4E-79 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS09480 f4320f9242e8ea5c0a5e551482bdb8ab 404 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 312 1.2E-7 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS16145 9c89ebfd5f50984777f5d1a609ad4d2c 66 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 THIMO_RS16145 9c89ebfd5f50984777f5d1a609ad4d2c 66 Pfam PF00403 Heavy-metal-associated domain 5 61 2.4E-17 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS16145 9c89ebfd5f50984777f5d1a609ad4d2c 66 PANTHER PTHR22814:SF15 9 66 1.0E-11 T 23-04-2016 THIMO_RS16145 9c89ebfd5f50984777f5d1a609ad4d2c 66 Gene3D G3DSA:3.30.70.100 3 65 1.4E-25 T 23-04-2016 THIMO_RS16145 9c89ebfd5f50984777f5d1a609ad4d2c 66 PANTHER PTHR22814 9 66 1.0E-11 T 23-04-2016 THIMO_RS16145 9c89ebfd5f50984777f5d1a609ad4d2c 66 SUPERFAMILY SSF55008 2 65 1.7E-19 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS16430 e919796e3d55e7e85dcf690ccc4c37a9 100 SUPERFAMILY SSF88723 43 93 1.57E-8 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS04820 afe01e851ab11d5d0c2ae19212ffab51 157 SUPERFAMILY SSF53098 1 147 1.21E-7 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS11310 383d6d7c5647e477f34da9587810792b 192 SUPERFAMILY SSF52499 16 192 5.89E-41 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 THIMO_RS11310 383d6d7c5647e477f34da9587810792b 192 Pfam PF00857 Isochorismatase family 16 169 6.8E-25 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 THIMO_RS11310 383d6d7c5647e477f34da9587810792b 192 PANTHER PTHR14119 16 190 3.0E-50 T 23-04-2016 THIMO_RS11310 383d6d7c5647e477f34da9587810792b 192 Gene3D G3DSA:3.40.50.850 15 191 5.7E-48 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 THIMO_RS11310 383d6d7c5647e477f34da9587810792b 192 PANTHER PTHR14119:SF3 16 190 3.0E-50 T 23-04-2016 THIMO_RS08785 f0ca65739ad7d4efca9f3328fad06dfd 474 PANTHER PTHR10283:SF91 4 473 1.8E-160 T 23-04-2016 THIMO_RS08785 f0ca65739ad7d4efca9f3328fad06dfd 474 Pfam PF03600 Citrate transporter 48 422 3.5E-64 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 THIMO_RS08785 f0ca65739ad7d4efca9f3328fad06dfd 474 PANTHER PTHR10283 4 473 1.8E-160 T 23-04-2016 THIMO_RS04410 cd3a8e5a7ee410ef409150f5c2dd6fa8 159 Pfam PF13511 Domain of unknown function (DUF4124) 2 41 4.3E-12 T 23-04-2016 IPR025392 Domain of unknown function DUF4124 THIMO_RS07190 238b27425f655f80e242e0a679779e08 322 Gene3D G3DSA:3.40.50.300 196 226 6.6E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07190 238b27425f655f80e242e0a679779e08 322 SUPERFAMILY SSF52540 156 230 2.39E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 PANTHER PTHR21235:SF15 1 248 2.3E-95 T 23-04-2016 THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 35.267 T 23-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 Gene3D G3DSA:3.20.20.70 3 236 8.1E-83 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 SUPERFAMILY SSF51366 3 235 5.73E-72 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 Pfam PF00977 Histidine biosynthesis protein 3 232 1.2E-73 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 234 4.3E-75 T 23-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 THIMO_RS08835 82202091e7d23ae98eef39b8ea12a194 248 PANTHER PTHR21235 1 248 2.3E-95 T 23-04-2016 THIMO_RS05785 9b5e3aac9be991055e5fcc38408a5319 153 Pfam PF02566 OsmC-like protein 40 140 8.3E-11 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS05785 9b5e3aac9be991055e5fcc38408a5319 153 Gene3D G3DSA:3.30.300.20 26 141 1.3E-15 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta THIMO_RS05785 9b5e3aac9be991055e5fcc38408a5319 153 SUPERFAMILY SSF82784 6 141 6.41E-19 T 23-04-2016 IPR003718 OsmC/Ohr family THIMO_RS06045 577c4d26caf48305b807d843e128d74a 481 PIRSF PIRSF006247 1 481 9.5E-168 T 23-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 THIMO_RS06045 577c4d26caf48305b807d843e128d74a 481 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 464 2.9E-104 T 23-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 THIMO_RS06045 577c4d26caf48305b807d843e128d74a 481 Pfam PF02386 Cation transport protein 37 475 8.5E-77 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 THIMO_RS06045 577c4d26caf48305b807d843e128d74a 481 PANTHER PTHR32024 1 481 5.0E-203 T 23-04-2016 THIMO_RS06045 577c4d26caf48305b807d843e128d74a 481 PANTHER PTHR32024:SF2 1 481 5.0E-203 T 23-04-2016 THIMO_RS03760 888c8be46bbc6a76a352e6dd0dbd75e1 628 PANTHER PTHR23073:SF24 416 592 3.4E-33 T 23-04-2016 THIMO_RS03760 888c8be46bbc6a76a352e6dd0dbd75e1 628 SUPERFAMILY SSF52540 370 586 6.05E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03760 888c8be46bbc6a76a352e6dd0dbd75e1 628 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 418 542 4.5E-22 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS03760 888c8be46bbc6a76a352e6dd0dbd75e1 628 SMART SM00382 413 545 5.3E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS03760 888c8be46bbc6a76a352e6dd0dbd75e1 628 Gene3D G3DSA:3.40.50.300 371 557 6.1E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03760 888c8be46bbc6a76a352e6dd0dbd75e1 628 PANTHER PTHR23073 416 592 3.4E-33 T 23-04-2016 THIMO_RS18475 ec3c2053bf8e2b5d18ea6c21874a4b10 170 Gene3D G3DSA:3.40.50.300 89 164 9.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18475 ec3c2053bf8e2b5d18ea6c21874a4b10 170 Pfam PF13654 AAA domain 2 169 1.1E-50 T 23-04-2016 THIMO_RS08925 ca0b3b9975fb114c46e9fc8d8c2e809b 131 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 113 6.7E-31 T 23-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 THIMO_RS08925 ca0b3b9975fb114c46e9fc8d8c2e809b 131 SUPERFAMILY SSF56796 10 118 2.22E-33 T 23-04-2016 THIMO_RS08925 ca0b3b9975fb114c46e9fc8d8c2e809b 131 Gene3D G3DSA:3.40.50.1970 9 111 8.0E-34 T 23-04-2016 THIMO_RS08925 ca0b3b9975fb114c46e9fc8d8c2e809b 131 PANTHER PTHR11496 11 120 6.4E-28 T 23-04-2016 THIMO_RS04670 1b31cf3ca420f7fab16ab3515e5fde2f 125 SUPERFAMILY SSF46785 5 100 4.05E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04670 1b31cf3ca420f7fab16ab3515e5fde2f 125 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 6.1E-15 T 23-04-2016 THIMO_RS04670 1b31cf3ca420f7fab16ab3515e5fde2f 125 Gene3D G3DSA:1.10.10.10 3 83 2.6E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS04670 1b31cf3ca420f7fab16ab3515e5fde2f 125 TIGRFAM TIGR04176 MarR_EPS: EPS-associated transcriptional regulator, MarR family 2 104 1.4E-47 T 23-04-2016 IPR026433 EPS-associated transcriptional regulator, MarR family THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 SUPERFAMILY SSF50969 129 461 7.59E-20 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 Gene3D G3DSA:2.130.10.10 304 536 2.3E-5 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 Gene3D G3DSA:2.130.10.10 73 293 6.5E-13 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 SUPERFAMILY SSF50969 645 670 4.32E-13 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 SUPERFAMILY SSF50969 743 762 4.32E-13 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 Pfam PF13449 Esterase-like activity of phytase 475 761 1.6E-45 T 23-04-2016 IPR027372 Phytase-like domain THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 SUPERFAMILY SSF50969 389 618 4.32E-13 T 23-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 Gene3D G3DSA:2.120.10.30 740 764 1.2E-7 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like THIMO_RS07375 aefe18a8936402c149c22badf758eaa4 782 Gene3D G3DSA:2.120.10.30 537 664 1.2E-7 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like THIMO_RS04350 3ba6161118009d429ddd2e4dcee6b769 175 Gene3D G3DSA:1.10.3210.10 44 134 4.3E-4 T 23-04-2016 IPR006674 HD domain THIMO_RS04350 3ba6161118009d429ddd2e4dcee6b769 175 Pfam PF13328 HD domain 7 135 2.2E-20 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS04350 3ba6161118009d429ddd2e4dcee6b769 175 PANTHER PTHR21262 1 163 6.0E-73 T 23-04-2016 THIMO_RS04350 3ba6161118009d429ddd2e4dcee6b769 175 SUPERFAMILY SSF109604 3 165 3.14E-41 T 23-04-2016 THIMO_RS04350 3ba6161118009d429ddd2e4dcee6b769 175 SMART SM00471 24 132 5.9E-5 T 23-04-2016 IPR003607 HD/PDEase domain THIMO_RS17830 e9703ae14a405a5a79d0974dfdf87305 145 Pfam PF03958 Bacterial type II/III secretion system short domain 49 117 9.1E-11 T 23-04-2016 IPR005644 NolW-like THIMO_RS07345 7f4dadab904367d5bed91c7592d831f9 387 Pfam PF13519 von Willebrand factor type A domain 113 228 2.4E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS07345 7f4dadab904367d5bed91c7592d831f9 387 SUPERFAMILY SSF53300 113 301 2.23E-15 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS07345 7f4dadab904367d5bed91c7592d831f9 387 Gene3D G3DSA:3.40.50.410 113 298 1.5E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS07345 7f4dadab904367d5bed91c7592d831f9 387 SMART SM00327 109 298 2.1E-5 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 PANTHER PTHR21600 20 122 8.4E-77 T 23-04-2016 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 PANTHER PTHR21600 139 194 8.4E-77 T 23-04-2016 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 25 195 1.9E-52 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 56 70 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 PANTHER PTHR21600:SF23 20 122 8.4E-77 T 23-04-2016 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 PANTHER PTHR21600:SF23 139 194 8.4E-77 T 23-04-2016 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 SUPERFAMILY SSF55120 20 197 6.72E-45 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS14430 19a0d354dcc2dd5713e684a735b4c1ef 200 Pfam PF00849 RNA pseudouridylate synthase 21 165 2.8E-16 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 THIMO_RS03045 9a3cceed0dfe8c73336ed91b332ceae7 385 PANTHER PTHR30489 2 385 5.9E-110 T 23-04-2016 THIMO_RS03045 9a3cceed0dfe8c73336ed91b332ceae7 385 PANTHER PTHR30489:SF11 2 385 5.9E-110 T 23-04-2016 THIMO_RS03045 9a3cceed0dfe8c73336ed91b332ceae7 385 Pfam PF02687 FtsX-like permease family 265 376 3.1E-13 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS03045 9a3cceed0dfe8c73336ed91b332ceae7 385 Pfam PF12704 MacB-like periplasmic core domain 22 228 4.1E-6 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS14270 5c3a2a689b30edfe5c4e8facc53d4e42 47 SUPERFAMILY SSF56918 4 47 4.19E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14270 5c3a2a689b30edfe5c4e8facc53d4e42 47 PIRSF PIRSF002900 1 47 4.3E-14 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14270 5c3a2a689b30edfe5c4e8facc53d4e42 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.5E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14270 5c3a2a689b30edfe5c4e8facc53d4e42 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 1.0E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14270 5c3a2a689b30edfe5c4e8facc53d4e42 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 1.0E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14270 5c3a2a689b30edfe5c4e8facc53d4e42 47 Gene3D G3DSA:1.20.5.250 8 47 1.9E-15 T 23-04-2016 THIMO_RS13155 fc3452bbfbd4dfeaa14137e719694945 171 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 29 169 3.5E-40 T 23-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 THIMO_RS13155 fc3452bbfbd4dfeaa14137e719694945 171 Gene3D G3DSA:2.60.450.10 29 166 3.9E-32 T 23-04-2016 THIMO_RS13155 fc3452bbfbd4dfeaa14137e719694945 171 Pfam PF03968 OstA-like protein 37 146 1.0E-27 T 23-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal THIMO_RS13155 fc3452bbfbd4dfeaa14137e719694945 171 PANTHER PTHR36504 1 171 2.9E-26 T 23-04-2016 THIMO_RS13155 fc3452bbfbd4dfeaa14137e719694945 171 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 14 169 21.819 T 23-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 PANTHER PTHR14741 190 371 8.7E-44 T 23-04-2016 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 Gene3D G3DSA:3.40.1010.10 11 116 3.5E-26 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 Gene3D G3DSA:3.30.950.10 117 216 1.8E-27 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 15 209 2.7E-50 T 23-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 SUPERFAMILY SSF53335 214 385 2.73E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 Gene3D G3DSA:3.40.50.150 240 409 4.4E-18 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 PIRSF PIRSF036428 8 410 1.2E-129 T 23-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 SUPERFAMILY SSF53790 12 213 8.51E-42 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 PANTHER PTHR14741:SF34 190 371 8.7E-44 T 23-04-2016 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 240 360 1.5E-31 T 23-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 THIMO_RS16875 b14734431a2b33de39683c1de092b8bc 410 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 198 8.7E-19 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS11510 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PANTHER PTHR22773 1 488 1.7E-100 T 23-04-2016 THIMO_RS11510 53bb178fca7c76eb458dbbcfdf6ae2a8 491 Pfam PF00361 Proton-conducting membrane transporter 127 412 1.4E-60 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 THIMO_RS11510 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PANTHER PTHR22773:SF49 1 488 1.7E-100 T 23-04-2016 THIMO_RS11510 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 214 235 1.77E-5 T 23-04-2016 THIMO_RS11510 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 236 262 1.77E-5 T 23-04-2016 THIMO_RS11510 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 305 317 1.77E-5 T 23-04-2016 THIMO_RS02230 bcd4fe2594f6064ef50412f33b4893fb 387 SUPERFAMILY SSF103501 174 372 2.75E-23 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS02230 bcd4fe2594f6064ef50412f33b4893fb 387 SUPERFAMILY SSF54862 21 105 8.93E-7 T 23-04-2016 THIMO_RS02230 bcd4fe2594f6064ef50412f33b4893fb 387 Gene3D G3DSA:3.30.70.20 23 71 3.1E-4 T 23-04-2016 THIMO_RS02230 bcd4fe2594f6064ef50412f33b4893fb 387 TIGRFAM TIGR02484 CitB: CitB domain protein 14 374 8.8E-144 T 23-04-2016 IPR012830 Citrate utilization protein B THIMO_RS02230 bcd4fe2594f6064ef50412f33b4893fb 387 Gene3D G3DSA:1.20.950.20 223 354 5.8E-4 T 23-04-2016 THIMO_RS02230 bcd4fe2594f6064ef50412f33b4893fb 387 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS11630 2bd9a65ce5fb9b59f1938f827e7a5ff5 164 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 12 157 5.6E-50 T 23-04-2016 IPR008136 CinA, C-terminal THIMO_RS11630 2bd9a65ce5fb9b59f1938f827e7a5ff5 164 Pfam PF02464 Competence-damaged protein 8 160 3.9E-59 T 23-04-2016 IPR008136 CinA, C-terminal THIMO_RS11630 2bd9a65ce5fb9b59f1938f827e7a5ff5 164 PANTHER PTHR13939 1 162 3.1E-66 T 23-04-2016 THIMO_RS11630 2bd9a65ce5fb9b59f1938f827e7a5ff5 164 Gene3D G3DSA:3.90.950.20 4 161 1.9E-57 T 23-04-2016 IPR008136 CinA, C-terminal THIMO_RS11630 2bd9a65ce5fb9b59f1938f827e7a5ff5 164 SUPERFAMILY SSF142433 6 160 1.15E-55 T 23-04-2016 IPR008136 CinA, C-terminal THIMO_RS09535 50c12b4c595b6cbdfcdc84851d00126e 75 SUPERFAMILY SSF46689 3 64 1.79E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS09535 50c12b4c595b6cbdfcdc84851d00126e 75 Gene3D G3DSA:1.10.10.10 6 64 7.2E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS09535 50c12b4c595b6cbdfcdc84851d00126e 75 Pfam PF04255 Protein of unknown function (DUF433) 7 62 9.1E-27 T 23-04-2016 IPR007367 Protein of unknown function DUF433 THIMO_RS09535 50c12b4c595b6cbdfcdc84851d00126e 75 PANTHER PTHR34849:SF2 4 62 6.3E-20 T 23-04-2016 THIMO_RS09535 50c12b4c595b6cbdfcdc84851d00126e 75 PANTHER PTHR34849 4 62 6.3E-20 T 23-04-2016 THIMO_RS00495 a260dd7f13f66134a5fbb74729a741ae 132 Pfam PF00816 H-NS histone family 17 108 2.3E-14 T 23-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 THIMO_RS04750 c595886e3ea1995d8e23a33569c37c9d 250 SUPERFAMILY SSF52540 16 175 2.61E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16910 3a5cde4380fac9ef0842f596f1405695 236 Pfam PF10938 YfdX protein 76 223 9.6E-41 T 23-04-2016 IPR021236 Uncharacterised protein family YfdX THIMO_RS08445 0c12409f4f4a114d761f76dda6808dd8 710 SUPERFAMILY SSF52540 313 513 1.33E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08445 0c12409f4f4a114d761f76dda6808dd8 710 Pfam PF13481 AAA domain 295 477 1.8E-24 T 23-04-2016 THIMO_RS08445 0c12409f4f4a114d761f76dda6808dd8 710 Pfam PF08707 Primase C terminal 2 (PriCT-2) 1 54 4.5E-13 T 23-04-2016 IPR014819 Primase, C-terminal 2 GO:0016817 THIMO_RS08445 0c12409f4f4a114d761f76dda6808dd8 710 Gene3D G3DSA:3.40.50.300 312 543 2.4E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03905 b513d032f9c26f456dee0a88ee138069 88 Gene3D G3DSA:1.20.120.330 17 76 5.9E-4 T 23-04-2016 THIMO_RS03905 b513d032f9c26f456dee0a88ee138069 88 SUPERFAMILY SSF81593 13 77 6.67E-8 T 23-04-2016 THIMO_RS16675 803eb3ab479c014a0514fbb8aa6a5c77 335 Pfam PF12224 Putative amidoligase enzyme 21 287 2.3E-65 T 23-04-2016 IPR022025 Putative amidoligase enzyme THIMO_RS18495 d1897965478853c0dc109b7da58e84d5 254 SUPERFAMILY SSF54523 13 88 7.85E-5 T 23-04-2016 THIMO_RS18495 d1897965478853c0dc109b7da58e84d5 254 Pfam PF16074 Type IV Pilus-assembly protein W 132 251 9.0E-23 T 23-04-2016 IPR032092 Type IV Pilus-assembly protein W GO:0043683 THIMO_RS18495 d1897965478853c0dc109b7da58e84d5 254 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18495 d1897965478853c0dc109b7da58e84d5 254 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 1.7E-5 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18495 d1897965478853c0dc109b7da58e84d5 254 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 9 32 5.1E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 PANTHER PTHR11993:SF9 2 117 2.1E-172 T 23-04-2016 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 PANTHER PTHR11993:SF9 260 457 2.1E-172 T 23-04-2016 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 PANTHER PTHR11993:SF9 136 204 2.1E-172 T 23-04-2016 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 PANTHER PTHR11993 2 117 2.1E-172 T 23-04-2016 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 PANTHER PTHR11993 260 457 2.1E-172 T 23-04-2016 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 PANTHER PTHR11993 136 204 2.1E-172 T 23-04-2016 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 Pfam PF00374 Nickel-dependent hydrogenase 239 450 2.2E-12 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 Pfam PF00374 Nickel-dependent hydrogenase 40 116 7.2E-18 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 441 450 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 Gene3D G3DSA:1.10.645.10 1 450 5.3E-127 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS11250 1d308131a782906c475e3820e38c36c0 475 SUPERFAMILY SSF56762 4 450 1.31E-132 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS16775 349a9d59da5dbc3eb0cfedc599eaa2cb 163 SUPERFAMILY SSF110857 1 125 1.28E-13 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like THIMO_RS16775 349a9d59da5dbc3eb0cfedc599eaa2cb 163 Gene3D G3DSA:3.10.490.10 1 158 1.1E-34 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like THIMO_RS16775 349a9d59da5dbc3eb0cfedc599eaa2cb 163 PANTHER PTHR12935 4 149 4.3E-25 T 23-04-2016 IPR017939 Gamma-glutamylcyclotransferase GO:0003839|GO:0006750 KEGG: 00480+2.3.2.4|MetaCyc: PWY-4041 THIMO_RS16775 349a9d59da5dbc3eb0cfedc599eaa2cb 163 Pfam PF13772 AIG2-like family 60 140 2.8E-13 T 23-04-2016 THIMO_RS03845 ad13e9cf6f6ebf985a4821f1fe2ed8cc 268 Pfam PF00665 Integrase core domain 105 216 6.5E-23 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS03845 ad13e9cf6f6ebf985a4821f1fe2ed8cc 268 SUPERFAMILY SSF53098 103 264 7.59E-50 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03845 ad13e9cf6f6ebf985a4821f1fe2ed8cc 268 Pfam PF13276 HTH-like domain 27 83 1.5E-17 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS03845 ad13e9cf6f6ebf985a4821f1fe2ed8cc 268 PANTHER PTHR32552 7 257 2.1E-30 T 23-04-2016 THIMO_RS03845 ad13e9cf6f6ebf985a4821f1fe2ed8cc 268 Gene3D G3DSA:3.30.420.10 99 254 2.5E-33 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS03790 a8ccb56959169b4ddc2362ec0dc78165 173 Gene3D G3DSA:2.40.50.230 25 85 4.5E-11 T 23-04-2016 IPR006531 Gp5 N-terminal THIMO_RS03790 a8ccb56959169b4ddc2362ec0dc78165 173 SUPERFAMILY SSF69255 8 86 4.84E-16 T 23-04-2016 THIMO_RS09380 13ad5b14dffb32c130c49abcb0410cd3 247 Pfam PF12872 OST-HTH/LOTUS domain 165 231 1.5E-14 T 23-04-2016 IPR025605 OST-HTH/LOTUS domain THIMO_RS09380 13ad5b14dffb32c130c49abcb0410cd3 247 PANTHER PTHR35811 1 243 1.5E-58 T 23-04-2016 THIMO_RS09380 13ad5b14dffb32c130c49abcb0410cd3 247 PANTHER PTHR35811:SF1 1 243 1.5E-58 T 23-04-2016 THIMO_RS09380 13ad5b14dffb32c130c49abcb0410cd3 247 Gene3D G3DSA:3.40.50.1010 3 143 3.2E-28 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS09380 13ad5b14dffb32c130c49abcb0410cd3 247 Pfam PF01936 NYN domain 8 141 3.4E-30 T 23-04-2016 IPR021139 NYN domain, limkain-b1-type THIMO_RS15040 20e20076b1083fdb718345e9c5c34c2e 1605 Pfam PF05567 Neisseria PilC beta-propeller domain 1034 1393 7.5E-69 T 23-04-2016 IPR008707 PilC beta-propeller domain THIMO_RS15040 20e20076b1083fdb718345e9c5c34c2e 1605 ProSitePatterns PS00018 EF-hand calcium-binding domain. 1531 1543 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site THIMO_RS17305 bd7d12a00cee97d8c693fdced82340bd 103 Pfam PF13484 4Fe-4S double cluster binding domain 26 91 4.7E-11 T 23-04-2016 THIMO_RS17305 bd7d12a00cee97d8c693fdced82340bd 103 Gene3D G3DSA:3.30.70.20 6 98 2.3E-15 T 23-04-2016 THIMO_RS17305 bd7d12a00cee97d8c693fdced82340bd 103 SUPERFAMILY SSF54862 8 98 1.57E-16 T 23-04-2016 THIMO_RS17305 bd7d12a00cee97d8c693fdced82340bd 103 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 6 98 4.9E-33 T 23-04-2016 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific THIMO_RS17305 bd7d12a00cee97d8c693fdced82340bd 103 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 27 38 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS17305 bd7d12a00cee97d8c693fdced82340bd 103 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 79 90 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS12890 f6670d07f95674a6c51c4287549e6218 140 Pfam PF01844 HNH endonuclease 50 98 9.4E-12 T 23-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 THIMO_RS12890 f6670d07f95674a6c51c4287549e6218 140 SMART SM00507 38 93 1.8E-4 T 23-04-2016 IPR003615 HNH nuclease THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 PANTHER PTHR36924:SF1 4 93 1.7E-38 T 23-04-2016 THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 SUPERFAMILY SSF47413 11 93 1.31E-25 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 7 85 1.5E-34 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 Gene3D G3DSA:1.10.260.40 7 85 2.8E-33 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 SMART SM00530 15 71 0.0035 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 Pfam PF01381 Helix-turn-helix 23 67 1.6E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS08200 41de6a2f63293d715bf62e580a0c3da0 100 PANTHER PTHR36924 4 93 1.7E-38 T 23-04-2016 THIMO_RS15445 2e17925dc64019299c63c52a538ed0bb 182 PIRSF PIRSF000013 2 179 4.1E-17 T 23-04-2016 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 THIMO_RS15445 2e17925dc64019299c63c52a538ed0bb 182 PANTHER PTHR30333 3 164 2.2E-14 T 23-04-2016 THIMO_RS15445 2e17925dc64019299c63c52a538ed0bb 182 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 7 167 2.1E-31 T 23-04-2016 IPR005126 NapC/NirT cytochrome c, N-terminal THIMO_RS15445 2e17925dc64019299c63c52a538ed0bb 182 SUPERFAMILY SSF48695 20 165 4.33E-19 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS15445 2e17925dc64019299c63c52a538ed0bb 182 Gene3D G3DSA:1.10.3820.10 3 166 1.4E-20 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 23-04-2016 IPR020845 AMP-binding, conserved site THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 PANTHER PTHR24095 3 497 1.2E-172 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 Gene3D G3DSA:2.30.38.10 324 397 1.3E-31 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 SUPERFAMILY SSF56801 2 497 1.31E-158 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 Gene3D G3DSA:3.40.50.980 166 323 1.7E-46 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 Gene3D G3DSA:3.40.50.980 1 165 1.3E-34 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 Gene3D G3DSA:3.30.300.30 401 497 1.3E-30 T 23-04-2016 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 Pfam PF00501 AMP-binding enzyme 7 406 4.7E-113 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 THIMO_RS02020 833be8c223435c37d6e426a53abfd022 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 416 489 1.1E-21 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain THIMO_RS06520 1c6c729288f2112343ae596e7f37c4de 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 16 223 3.1E-15 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 THIMO_RS06520 1c6c729288f2112343ae596e7f37c4de 301 SUPERFAMILY SSF51735 16 296 5.92E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06520 1c6c729288f2112343ae596e7f37c4de 301 PANTHER PTHR10366:SF430 14 294 1.4E-59 T 23-04-2016 THIMO_RS06520 1c6c729288f2112343ae596e7f37c4de 301 Gene3D G3DSA:3.40.50.720 19 288 1.6E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS06520 1c6c729288f2112343ae596e7f37c4de 301 PANTHER PTHR10366 14 294 1.4E-59 T 23-04-2016 THIMO_RS17605 345496ef532ff0ead0e6428325d58cd7 70 PANTHER PTHR33383 2 70 1.4E-34 T 23-04-2016 THIMO_RS17605 345496ef532ff0ead0e6428325d58cd7 70 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 10 70 5.8E-25 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor THIMO_RS17605 345496ef532ff0ead0e6428325d58cd7 70 SMART SM01234 4 70 2.1E-38 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor THIMO_RS17605 345496ef532ff0ead0e6428325d58cd7 70 Pfam PF01809 Haemolytic domain 5 70 3.5E-29 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor THIMO_RS17605 345496ef532ff0ead0e6428325d58cd7 70 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 4 70 21.439 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor THIMO_RS17605 345496ef532ff0ead0e6428325d58cd7 70 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 19 70 2.0E-16 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor THIMO_RS12035 b22ecde723f0c8f71a832eae6ef6da8b 210 Pfam PF08856 Protein of unknown function (DUF1826) 21 205 1.3E-56 T 23-04-2016 IPR014955 Protein of unknown function DUF1826 THIMO_RS14175 13cf19a9993bfc063b1975e95ea7625f 416 SUPERFAMILY SSF53649 74 415 1.55E-51 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS14175 13cf19a9993bfc063b1975e95ea7625f 416 Gene3D G3DSA:3.40.720.10 73 328 8.1E-32 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS14175 13cf19a9993bfc063b1975e95ea7625f 416 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 76 301 6.6E-24 T 23-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 THIMO_RS04255 1d720a700bf9253c52869ab441569742 504 Pfam PF06122 Conjugative relaxosome accessory transposon protein 39 426 2.1E-105 T 23-04-2016 IPR010927 Type IV conjugative transfer system protein TraH THIMO_RS05290 b898920678c8297f1b3cee191da7ea2e 375 Pfam PF07907 YibE/F-like protein 125 362 4.0E-68 T 23-04-2016 IPR012507 YibE/F-like THIMO_RS05290 b898920678c8297f1b3cee191da7ea2e 375 PANTHER PTHR41771 63 375 1.6E-40 T 23-04-2016 THIMO_RS05290 b898920678c8297f1b3cee191da7ea2e 375 PANTHER PTHR41771:SF1 63 375 1.6E-40 T 23-04-2016 THIMO_RS11050 eb9ca2c82469ace5391b70084b2c9b50 76 Pfam PF01724 Domain of unknown function DUF29 4 75 4.9E-28 T 23-04-2016 IPR002636 Protein from unkown function DUF29 THIMO_RS11050 eb9ca2c82469ace5391b70084b2c9b50 76 PANTHER PTHR34235:SF3 2 74 1.8E-29 T 23-04-2016 THIMO_RS11050 eb9ca2c82469ace5391b70084b2c9b50 76 PANTHER PTHR34235 2 74 1.8E-29 T 23-04-2016 THIMO_RS05125 20a62211091e0a24d472fc7469b613ed 142 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 84 1.8E-26 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 THIMO_RS05125 20a62211091e0a24d472fc7469b613ed 142 SUPERFAMILY SSF54534 4 141 7.86E-44 T 23-04-2016 THIMO_RS05125 20a62211091e0a24d472fc7469b613ed 142 PANTHER PTHR10516 2 73 1.3E-27 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type THIMO_RS05125 20a62211091e0a24d472fc7469b613ed 142 PANTHER PTHR10516 131 141 1.3E-27 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type THIMO_RS05125 20a62211091e0a24d472fc7469b613ed 142 Gene3D G3DSA:3.10.50.40 3 81 4.1E-33 T 23-04-2016 THIMO_RS05125 20a62211091e0a24d472fc7469b613ed 142 Gene3D G3DSA:3.10.50.40 128 141 4.1E-33 T 23-04-2016 THIMO_RS03645 9a7e5c0acf2904e84b1511c65968a77d 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 1.0E-51 T 23-04-2016 IPR006056 RidA family THIMO_RS03645 9a7e5c0acf2904e84b1511c65968a77d 128 Gene3D G3DSA:3.30.1330.40 3 123 9.4E-49 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS03645 9a7e5c0acf2904e84b1511c65968a77d 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 23-04-2016 IPR019897 RidA, conserved site THIMO_RS03645 9a7e5c0acf2904e84b1511c65968a77d 128 SUPERFAMILY SSF55298 1 126 2.36E-47 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like THIMO_RS03645 9a7e5c0acf2904e84b1511c65968a77d 128 PANTHER PTHR11803 3 123 2.5E-53 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family THIMO_RS03645 9a7e5c0acf2904e84b1511c65968a77d 128 Pfam PF01042 Endoribonuclease L-PSP 9 124 3.7E-43 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 SMART SM00729 9 227 4.5E-55 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 PANTHER PTHR13932:SF7 8 385 1.8E-149 T 23-04-2016 THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 PANTHER PTHR13932 8 385 1.8E-149 T 23-04-2016 THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 SUPERFAMILY SSF102114 7 385 2.22E-105 T 23-04-2016 THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 Pfam PF04055 Radical SAM superfamily 14 184 4.5E-20 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 Pfam PF06969 HemN C-terminal domain 313 373 8.3E-10 T 23-04-2016 IPR010723 HemN, C-terminal THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 Gene3D G3DSA:3.80.30.20 11 218 5.9E-32 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe THIMO_RS00370 88ec20ab9954513756bf1e1f6b68b49d 386 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 364 3.7E-100 T 23-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- THIMO_RS04765 c2c8eb7ad7bf942b20273edc280db342 329 Pfam PF13439 Glycosyltransferase Family 4 76 148 1.7E-9 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS04765 c2c8eb7ad7bf942b20273edc280db342 329 Pfam PF00534 Glycosyl transferases group 1 162 304 4.0E-17 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS04765 c2c8eb7ad7bf942b20273edc280db342 329 PANTHER PTHR12526 40 327 2.5E-37 T 23-04-2016 THIMO_RS04765 c2c8eb7ad7bf942b20273edc280db342 329 SUPERFAMILY SSF53756 70 327 9.94E-52 T 23-04-2016 THIMO_RS04765 c2c8eb7ad7bf942b20273edc280db342 329 Gene3D G3DSA:3.40.50.2000 147 305 4.2E-16 T 23-04-2016 THIMO_RS14850 d40e930fac05ce19ec6d2f8d2eaa573b 339 PANTHER PTHR30294 140 339 2.8E-41 T 23-04-2016 THIMO_RS14850 d40e930fac05ce19ec6d2f8d2eaa573b 339 PANTHER PTHR30294 1 54 2.8E-41 T 23-04-2016 THIMO_RS14850 d40e930fac05ce19ec6d2f8d2eaa573b 339 Pfam PF01061 ABC-2 type transporter 138 305 7.5E-26 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 THIMO_RS12180 14239adc6e7ff0945ae96ec3a9793e64 127 PANTHER PTHR12901:SF7 1 126 8.4E-47 T 23-04-2016 THIMO_RS12180 14239adc6e7ff0945ae96ec3a9793e64 127 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 1 118 5.8E-27 T 23-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain THIMO_RS12180 14239adc6e7ff0945ae96ec3a9793e64 127 Gene3D G3DSA:3.30.530.20 1 126 1.5E-38 T 23-04-2016 IPR023393 START-like domain THIMO_RS12180 14239adc6e7ff0945ae96ec3a9793e64 127 SUPERFAMILY SSF55961 1 126 1.51E-26 T 23-04-2016 THIMO_RS12180 14239adc6e7ff0945ae96ec3a9793e64 127 PANTHER PTHR12901 1 126 8.4E-47 T 23-04-2016 THIMO_RS10550 dc793cb275f998126e6b7ebc8c93fa1d 379 Gene3D G3DSA:1.10.600.10 41 349 6.8E-52 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS10550 dc793cb275f998126e6b7ebc8c93fa1d 379 SUPERFAMILY SSF48576 41 360 5.47E-38 T 23-04-2016 IPR008949 Isoprenoid synthase domain THIMO_RS01395 bb566ffa82b8813d4171daf348a6c6b8 72 Pfam PF04316 Anti-sigma-28 factor, FlgM 7 60 3.2E-14 T 23-04-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal THIMO_RS01395 bb566ffa82b8813d4171daf348a6c6b8 72 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 6 63 7.5E-17 T 23-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 THIMO_RS01395 bb566ffa82b8813d4171daf348a6c6b8 72 SUPERFAMILY SSF101498 5 62 6.02E-11 T 23-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 55 76 1.6E-9 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 77 93 1.6E-9 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 112 137 1.6E-9 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 94 111 1.6E-9 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 4 20 1.6E-9 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 SUPERFAMILY SSF74653 190 271 2.62E-25 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 Gene3D G3DSA:3.30.1150.10 156 274 4.8E-18 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 195 272 5.4E-25 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 196 272 2.7E-24 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PANTHER PTHR33446:SF2 19 273 1.5E-22 T 23-04-2016 THIMO_RS15135 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PANTHER PTHR33446 19 273 1.5E-22 T 23-04-2016 THIMO_RS08320 8dde15e41a9c63f3b0cda956d9e00f58 195 SUPERFAMILY SSF56300 10 174 1.55E-29 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS08320 8dde15e41a9c63f3b0cda956d9e00f58 195 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 11 164 2.9E-16 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 THIMO_RS08320 8dde15e41a9c63f3b0cda956d9e00f58 195 PANTHER PTHR11124 4 150 4.1E-13 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 THIMO_RS08320 8dde15e41a9c63f3b0cda956d9e00f58 195 Gene3D G3DSA:3.60.21.10 11 170 9.1E-27 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like THIMO_RS08320 8dde15e41a9c63f3b0cda956d9e00f58 195 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 11 162 4.1E-25 T 23-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type THIMO_RS15915 bbf2cae6083db31a89ee499c39468ac6 220 SUPERFAMILY SSF103501 10 30 2.48E-32 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS15915 bbf2cae6083db31a89ee499c39468ac6 220 SUPERFAMILY SSF103501 64 215 2.48E-32 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS15915 bbf2cae6083db31a89ee499c39468ac6 220 Gene3D G3DSA:1.20.950.20 7 165 3.7E-4 T 23-04-2016 THIMO_RS15915 bbf2cae6083db31a89ee499c39468ac6 220 Gene3D G3DSA:1.20.950.20 170 207 1.8E-6 T 23-04-2016 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PANTHER PTHR30477 1 312 1.8E-97 T 23-04-2016 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 273 292 1.6E-40 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 32 50 1.6E-40 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 242 260 1.6E-40 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 63 76 1.6E-40 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 189 210 1.6E-40 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 76 93 1.6E-40 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 Pfam PF01297 Zinc-uptake complex component A periplasmic 35 306 1.0E-67 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 SUPERFAMILY SSF53807 29 309 9.32E-69 T 23-04-2016 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 Gene3D G3DSA:3.40.50.1980 182 308 7.0E-43 T 23-04-2016 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PANTHER PTHR30477:SF16 1 312 1.8E-97 T 23-04-2016 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 286 304 2.4E-18 T 23-04-2016 IPR006129 Adhesin B GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 57 75 2.4E-18 T 23-04-2016 IPR006129 Adhesin B GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 76 95 2.4E-18 T 23-04-2016 IPR006129 Adhesin B GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 265 283 2.4E-18 T 23-04-2016 IPR006129 Adhesin B GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 189 206 2.4E-18 T 23-04-2016 IPR006129 Adhesin B GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 32 53 2.4E-18 T 23-04-2016 IPR006129 Adhesin B GO:0007155 THIMO_RS06000 ef6b5549df58140d5c7c05dcd1110399 334 Gene3D G3DSA:3.40.50.1980 27 181 1.9E-35 T 23-04-2016 THIMO_RS06340 5f93c5cb2e120ac8c77d05ea841587d4 97 Pfam PF04977 Septum formation initiator 11 89 6.3E-25 T 23-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 THIMO_RS06340 5f93c5cb2e120ac8c77d05ea841587d4 97 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 30.996 T 23-04-2016 IPR023081 Cell division protein FtsB THIMO_RS06340 5f93c5cb2e120ac8c77d05ea841587d4 97 PANTHER PTHR37485 2 95 3.2E-32 T 23-04-2016 THIMO_RS06340 5f93c5cb2e120ac8c77d05ea841587d4 97 PANTHER PTHR37485:SF1 2 95 3.2E-32 T 23-04-2016 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 Gene3D G3DSA:3.30.70.560 4 152 7.6E-40 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 130 2.3E-28 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 PANTHER PTHR20941:SF12 4 162 2.5E-44 T 23-04-2016 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 SUPERFAMILY SSF55083 3 152 8.89E-42 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 PANTHER PTHR20941 4 162 2.5E-44 T 23-04-2016 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 85 96 - T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS02670 495bb638b3157e15bfa120920a1f12dc 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 2.0E-26 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 PRINTS PR00421 Thioredoxin family signature 60 68 5.7E-8 T 23-04-2016 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 PRINTS PR00421 Thioredoxin family signature 68 77 5.7E-8 T 23-04-2016 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 PRINTS PR00421 Thioredoxin family signature 108 119 5.7E-8 T 23-04-2016 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 Gene3D G3DSA:3.40.30.10 40 143 2.7E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 PANTHER PTHR10438:SF281 22 144 1.2E-39 T 23-04-2016 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 TIGRFAM TIGR01068 thioredoxin: thioredoxin 46 141 5.3E-31 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 SUPERFAMILY SSF52833 29 144 2.78E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 Pfam PF00085 Thioredoxin 43 141 1.8E-25 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 ProSitePatterns PS00194 Thioredoxin family active site. 61 79 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 THIMO_RS11200 4c99c5bf67963229110eac7790f003d3 144 PANTHER PTHR10438 22 144 1.2E-39 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 THIMO_RS16170 b0e613795dbfbb8a0a239272e97f3dcb 164 Pfam PF11159 Protein of unknown function (DUF2939) 8 101 2.1E-18 T 23-04-2016 IPR021330 Protein of unknown function DUF2939 THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 SUPERFAMILY SSF116726 160 213 6.28E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 Gene3D G3DSA:3.40.50.720 6 144 1.3E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 Pfam PF02080 TrkA-C domain 160 210 5.7E-8 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 Gene3D G3DSA:3.30.70.1450 163 210 3.4E-6 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 PANTHER PTHR16254 1 158 7.6E-23 T 23-04-2016 THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 SUPERFAMILY SSF51735 1 141 1.64E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07400 5af339300b13c3ad46996059fe4b4741 215 Pfam PF02254 TrkA-N domain 5 116 2.8E-18 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 THIMO_RS08970 cd1d992d8f38a89ce8a476a676e2e8ed 719 SUPERFAMILY SSF48695 557 703 4.03E-7 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS08970 cd1d992d8f38a89ce8a476a676e2e8ed 719 SUPERFAMILY SSF48695 124 429 1.98E-34 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS08970 cd1d992d8f38a89ce8a476a676e2e8ed 719 Gene3D G3DSA:1.10.710.10 124 170 1.5E-18 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 THIMO_RS08970 cd1d992d8f38a89ce8a476a676e2e8ed 719 Gene3D G3DSA:1.10.710.10 219 427 1.5E-18 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 THIMO_RS08970 cd1d992d8f38a89ce8a476a676e2e8ed 719 Gene3D G3DSA:1.10.710.10 679 687 1.5E-18 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 THIMO_RS01930 4421061dee8735341b99f09708b80bbd 199 SUPERFAMILY SSF55729 17 172 1.86E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS01930 4421061dee8735341b99f09708b80bbd 199 Gene3D G3DSA:3.40.630.30 17 175 4.7E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 243 271 2.8E-54 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 298 318 2.8E-54 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 362 378 2.8E-54 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 167 180 2.8E-54 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 382 396 2.8E-54 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 221 236 2.8E-54 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 Gene3D G3DSA:1.10.230.10 283 376 4.3E-42 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PIRSF PIRSF001369 39 431 2.3E-164 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 PANTHER PTHR11739 42 431 3.1E-199 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 Pfam PF00285 Citrate synthase, C-terminal domain 48 414 1.1E-135 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 ProSitePatterns PS00480 Citrate synthase signature. 305 317 - T 23-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 425 3.4E-211 T 23-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 Gene3D G3DSA:1.10.580.10 54 282 3.3E-96 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 THIMO_RS00380 5c64133799c45b38b1c45437631a56d5 431 SUPERFAMILY SSF48256 8 431 1.57E-162 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 THIMO_RS08840 ff3fde6cdf635e3acb19708aaa9650e7 133 PANTHER PTHR21256 1 130 3.1E-59 T 23-04-2016 THIMO_RS08840 ff3fde6cdf635e3acb19708aaa9650e7 133 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 107 2.4E-34 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 THIMO_RS08840 ff3fde6cdf635e3acb19708aaa9650e7 133 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 111 31.49 T 23-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 THIMO_RS08840 ff3fde6cdf635e3acb19708aaa9650e7 133 SUPERFAMILY SSF141734 7 117 2.62E-47 T 23-04-2016 THIMO_RS08840 ff3fde6cdf635e3acb19708aaa9650e7 133 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 107 2.0E-19 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 SUPERFAMILY SSF53335 1 219 2.01E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 5 220 29.974 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 PANTHER PTHR23417:SF14 1 220 1.4E-71 T 23-04-2016 THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 Pfam PF02390 Putative methyltransferase 45 213 2.7E-55 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 PANTHER PTHR23417 1 220 1.4E-71 T 23-04-2016 THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 Gene3D G3DSA:3.40.50.150 27 175 2.7E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09775 1c720528ff77ad13de73563d8a261b44 220 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 37 219 2.8E-55 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 PANTHER PTHR19370:SF68 29 135 2.7E-31 T 23-04-2016 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 PANTHER PTHR19370:SF68 157 279 2.7E-31 T 23-04-2016 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 Gene3D G3DSA:2.10.240.10 249 291 1.4E-15 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 Pfam PF00970 Oxidoreductase FAD-binding domain 28 104 1.3E-4 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 SUPERFAMILY SSF52343 101 290 7.02E-21 T 23-04-2016 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 SUPERFAMILY SSF63380 14 106 2.87E-19 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 PANTHER PTHR19370 29 135 2.7E-31 T 23-04-2016 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 PANTHER PTHR19370 157 279 2.7E-31 T 23-04-2016 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 Gene3D G3DSA:2.40.30.10 13 104 1.4E-24 T 23-04-2016 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 249 289 2.4E-17 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 THIMO_RS12250 4e03734d008f8d10ef709eb2b6313a20 295 Gene3D G3DSA:3.40.50.80 111 247 2.1E-14 T 23-04-2016 THIMO_RS14230 e7973e5baf2dd82f6457d2d138b5cbc7 64 Gene3D G3DSA:1.20.5.890 1 42 1.2E-18 T 23-04-2016 THIMO_RS14230 e7973e5baf2dd82f6457d2d138b5cbc7 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 1.8E-8 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14230 e7973e5baf2dd82f6457d2d138b5cbc7 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 1.8E-8 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14230 e7973e5baf2dd82f6457d2d138b5cbc7 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 1.8E-8 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14230 e7973e5baf2dd82f6457d2d138b5cbc7 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 5.4E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14230 e7973e5baf2dd82f6457d2d138b5cbc7 64 SUPERFAMILY SSF56918 1 45 1.41E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS15620 9e85abfaa9029cc237f6850752565b99 296 SUPERFAMILY SSF53800 9 281 2.07E-14 T 23-04-2016 THIMO_RS15620 9e85abfaa9029cc237f6850752565b99 296 Gene3D G3DSA:3.40.50.1400 153 283 4.0E-10 T 23-04-2016 THIMO_RS15620 9e85abfaa9029cc237f6850752565b99 296 Gene3D G3DSA:3.40.50.1400 10 126 1.9E-6 T 23-04-2016 THIMO_RS00210 d18dc354f297e48b3f05fc77b3c3947b 159 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 8.4E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00210 d18dc354f297e48b3f05fc77b3c3947b 159 SUPERFAMILY SSF54523 14 141 6.36E-15 T 23-04-2016 THIMO_RS00210 d18dc354f297e48b3f05fc77b3c3947b 159 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 10 32 1.1E-7 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00210 d18dc354f297e48b3f05fc77b3c3947b 159 Pfam PF12019 Type II transport protein GspH 49 144 2.5E-8 T 23-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 THIMO_RS00210 d18dc354f297e48b3f05fc77b3c3947b 159 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS00210 d18dc354f297e48b3f05fc77b3c3947b 159 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 10 147 5.3E-19 T 23-04-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 324 1.7E-95 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 SUPERFAMILY SSF51735 1 340 2.74E-95 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 PANTHER PTHR10366 3 351 6.0E-167 T 23-04-2016 THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 Gene3D G3DSA:3.90.25.10 192 336 1.0E-55 T 23-04-2016 THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 Gene3D G3DSA:3.40.50.720 1 191 1.1E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 336 1.3E-149 T 23-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 THIMO_RS14535 3b38d5c882abde4e13cbe1b07fa88f9d 351 PANTHER PTHR10366:SF41 3 351 6.0E-167 T 23-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 THIMO_RS13590 f74742c0c3772db0824d5f7e94bd581b 66 Gene3D G3DSA:1.10.287.310 1 61 3.0E-28 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13590 f74742c0c3772db0824d5f7e94bd581b 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.779 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13590 f74742c0c3772db0824d5f7e94bd581b 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 59 1.4E-21 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13590 f74742c0c3772db0824d5f7e94bd581b 66 PANTHER PTHR10916 1 62 3.2E-24 T 23-04-2016 THIMO_RS13590 f74742c0c3772db0824d5f7e94bd581b 66 SUPERFAMILY SSF46561 1 62 5.1E-23 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13590 f74742c0c3772db0824d5f7e94bd581b 66 Pfam PF00831 Ribosomal L29 protein 4 59 4.9E-25 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS13385 1e2597a0834abeb92e3326349aa1b4ab 880 SUPERFAMILY SSF56935 521 705 1.65E-5 T 23-04-2016 THIMO_RS13385 1e2597a0834abeb92e3326349aa1b4ab 880 SUPERFAMILY SSF56935 427 469 1.65E-5 T 23-04-2016 THIMO_RS13385 1e2597a0834abeb92e3326349aa1b4ab 880 Pfam PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB 103 879 1.4E-108 T 23-04-2016 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB THIMO_RS13385 1e2597a0834abeb92e3326349aa1b4ab 880 SUPERFAMILY SSF56935 563 601 3.46E-5 T 23-04-2016 THIMO_RS13385 1e2597a0834abeb92e3326349aa1b4ab 880 SUPERFAMILY SSF56935 638 847 3.46E-5 T 23-04-2016 THIMO_RS13945 f2d73722696b13c8f71a615ccc11deed 342 SUPERFAMILY SSF53300 84 282 1.48E-37 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13945 f2d73722696b13c8f71a615ccc11deed 342 Pfam PF00092 von Willebrand factor type A domain 88 279 1.8E-29 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13945 f2d73722696b13c8f71a615ccc11deed 342 PANTHER PTHR22550:SF12 1 317 2.6E-111 T 23-04-2016 THIMO_RS13945 f2d73722696b13c8f71a615ccc11deed 342 Gene3D G3DSA:3.40.50.410 86 281 1.8E-28 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13945 f2d73722696b13c8f71a615ccc11deed 342 SMART SM00327 86 286 6.4E-24 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS13945 f2d73722696b13c8f71a615ccc11deed 342 PANTHER PTHR22550 1 317 2.6E-111 T 23-04-2016 THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 Pfam PF13476 AAA domain 5 247 2.0E-19 T 23-04-2016 THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 SUPERFAMILY SSF52540 205 241 2.21E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 SUPERFAMILY SSF52540 514 638 2.21E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 SUPERFAMILY SSF52540 429 471 2.21E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 SUPERFAMILY SSF52540 1 160 2.21E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 TIGRFAM TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD 1 664 3.3E-181 T 23-04-2016 IPR017599 DNA sulphur modification protein DndD THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 Gene3D G3DSA:3.40.50.300 268 291 1.1E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 Gene3D G3DSA:3.40.50.300 2 167 1.1E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 Gene3D G3DSA:3.40.50.300 204 232 1.1E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12950 444768fdc6fa5972ec016a6cf1a32d7a 671 Gene3D G3DSA:3.40.50.300 548 631 1.1E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16445 baed138dd19ecef7f90ba429d9a45983 385 Gene3D G3DSA:1.10.260.40 11 68 3.8E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS16445 baed138dd19ecef7f90ba429d9a45983 385 SUPERFAMILY SSF47413 8 69 1.58E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS16445 baed138dd19ecef7f90ba429d9a45983 385 Pfam PF06114 Domain of unknown function (DUF955) 185 296 4.0E-15 T 23-04-2016 IPR010359 HTH domain, IrrE-type THIMO_RS07435 2fd17ec5401ec353632a4d3fe52691be 325 Pfam PF03631 Virulence factor BrkB 48 302 3.2E-63 T 23-04-2016 IPR017039 Virulence factor BrkB THIMO_RS07435 2fd17ec5401ec353632a4d3fe52691be 325 PANTHER PTHR30213:SF2 9 324 3.6E-82 T 23-04-2016 THIMO_RS07435 2fd17ec5401ec353632a4d3fe52691be 325 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 40 299 7.0E-32 T 23-04-2016 IPR017039 Virulence factor BrkB THIMO_RS07435 2fd17ec5401ec353632a4d3fe52691be 325 PIRSF PIRSF035875 22 321 1.3E-68 T 23-04-2016 IPR017039 Virulence factor BrkB THIMO_RS07435 2fd17ec5401ec353632a4d3fe52691be 325 PANTHER PTHR30213 9 324 3.6E-82 T 23-04-2016 THIMO_RS06130 4d6de181db8671b3323e9c591ca46df5 104 Pfam PF13488 Glycine zipper 30 71 9.3E-12 T 23-04-2016 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 SUPERFAMILY SSF53223 1 122 4.8E-42 T 23-04-2016 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 281 37.59 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 3.9E-42 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.1E-83 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 Gene3D G3DSA:3.40.50.720 141 264 1.3E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 SUPERFAMILY SSF51735 123 278 2.47E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 278 1.3E-65 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 PANTHER PTHR10025 1 278 3.6E-159 T 23-04-2016 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 THIMO_RS02960 8185656cde375cdbfe33b3654e2c8569 281 Gene3D G3DSA:3.40.192.10 7 140 3.1E-52 T 23-04-2016 THIMO_RS00110 1c828d669bff992098fdf70efd3ade46 119 PANTHER PTHR36173 2 119 1.6E-28 T 23-04-2016 THIMO_RS00110 1c828d669bff992098fdf70efd3ade46 119 Pfam PF01850 PIN domain 4 112 1.2E-8 T 23-04-2016 IPR002716 PIN domain THIMO_RS00110 1c828d669bff992098fdf70efd3ade46 119 SUPERFAMILY SSF88723 1 117 2.19E-13 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS00110 1c828d669bff992098fdf70efd3ade46 119 PANTHER PTHR36173:SF2 2 119 1.6E-28 T 23-04-2016 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 SMART SM00382 369 556 1.3E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 Pfam PF00664 ABC transporter transmembrane region 30 296 1.8E-51 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 13 581 1.1E-231 T 23-04-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 Pfam PF00005 ABC transporter 360 510 4.5E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 Gene3D G3DSA:3.40.50.300 343 574 6.9E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 PANTHER PTHR24221 11 583 3.1E-225 T 23-04-2016 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 Gene3D G3DSA:1.20.1560.10 15 326 4.2E-71 T 23-04-2016 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 SUPERFAMILY SSF90123 15 326 4.32E-74 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 THIMO_RS16080 45b7b65625a2112f5774bb30e0bc2832 588 SUPERFAMILY SSF52540 335 581 4.35E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00080 b32882176c89a14f5926a2b625665bea 423 Pfam PF00534 Glycosyl transferases group 1 227 387 1.3E-35 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS00080 b32882176c89a14f5926a2b625665bea 423 SUPERFAMILY SSF53756 27 412 3.14E-76 T 23-04-2016 THIMO_RS00080 b32882176c89a14f5926a2b625665bea 423 Pfam PF13439 Glycosyltransferase Family 4 27 202 4.6E-16 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS00080 b32882176c89a14f5926a2b625665bea 423 PANTHER PTHR12526 8 423 4.3E-58 T 23-04-2016 THIMO_RS00080 b32882176c89a14f5926a2b625665bea 423 Gene3D G3DSA:3.40.50.2000 29 148 4.7E-5 T 23-04-2016 THIMO_RS00080 b32882176c89a14f5926a2b625665bea 423 Gene3D G3DSA:3.40.50.2000 225 387 4.3E-38 T 23-04-2016 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF00708 Acylphosphatase 10 92 1.7E-18 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 Gene3D G3DSA:3.30.70.100 9 92 3.5E-24 T 23-04-2016 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 SUPERFAMILY SSF54975 10 92 5.45E-21 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 Gene3D G3DSA:3.90.870.10 209 386 6.3E-50 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 PANTHER PTHR10029:SF4 9 784 0.0 T 23-04-2016 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 ProSitePatterns PS00150 Acylphosphatase signature 1. 12 22 - T 23-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 PANTHER PTHR10029 9 784 0.0 T 23-04-2016 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 10 775 1.4E-233 T 23-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF01300 Telomere recombination 217 391 1.1E-51 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 PIRSF PIRSF006256 4 785 8.3E-287 T 23-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 SUPERFAMILY SSF55821 177 398 2.78E-52 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF07503 HypF finger 160 192 4.1E-17 T 23-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 THIMO_RS09365 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF07503 HypF finger 110 143 7.0E-17 T 23-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 THIMO_RS15330 020ac0c9742f0c71df42c815a252ea2c 663 SMART SM00487 154 342 4.1E-24 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS15330 020ac0c9742f0c71df42c815a252ea2c 663 SUPERFAMILY SSF52540 153 345 4.15E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15330 020ac0c9742f0c71df42c815a252ea2c 663 Pfam PF00176 SNF2 family N-terminal domain 176 398 4.9E-29 T 23-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 THIMO_RS15330 020ac0c9742f0c71df42c815a252ea2c 663 Gene3D G3DSA:3.40.50.300 157 320 6.5E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15330 020ac0c9742f0c71df42c815a252ea2c 663 PANTHER PTHR10799 157 472 5.1E-53 T 23-04-2016 THIMO_RS15330 020ac0c9742f0c71df42c815a252ea2c 663 SUPERFAMILY SSF52540 362 474 2.49E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18220 43291b5aa7189d02651f8ad0c41a42f3 129 SUPERFAMILY SSF56672 6 118 1.45E-14 T 23-04-2016 THIMO_RS18220 43291b5aa7189d02651f8ad0c41a42f3 129 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 30 119 4.5E-12 T 23-04-2016 IPR000477 Reverse transcriptase domain THIMO_RS18220 43291b5aa7189d02651f8ad0c41a42f3 129 PANTHER PTHR34047 14 123 4.6E-31 T 23-04-2016 THIMO_RS16895 fecaaed3274946212c4dfe3c9a9b9b31 209 PANTHER PTHR32439 6 204 2.8E-74 T 23-04-2016 THIMO_RS16895 fecaaed3274946212c4dfe3c9a9b9b31 209 Pfam PF02570 Precorrin-8X methylmutase 14 206 3.6E-75 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 THIMO_RS16895 fecaaed3274946212c4dfe3c9a9b9b31 209 SUPERFAMILY SSF63965 5 206 8.37E-73 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 THIMO_RS16895 fecaaed3274946212c4dfe3c9a9b9b31 209 Gene3D G3DSA:3.40.50.10230 4 205 4.9E-82 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 THIMO_RS07150 4f78ce4957e3d30923f4d03ca670fcac 356 Pfam PF01992 ATP synthase (C/AC39) subunit 10 334 1.2E-45 T 23-04-2016 IPR002843 ATPase, V0 complex, c/d subunit THIMO_RS07150 4f78ce4957e3d30923f4d03ca670fcac 356 PANTHER PTHR38682 8 343 3.1E-19 T 23-04-2016 THIMO_RS07150 4f78ce4957e3d30923f4d03ca670fcac 356 SUPERFAMILY SSF103486 8 334 2.48E-26 T 23-04-2016 IPR002843 ATPase, V0 complex, c/d subunit THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.3E-27 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.1E-20 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.1E-20 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.1E-20 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 PANTHER PTHR34040:SF2 1 89 1.1E-33 T 23-04-2016 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 PIRSF PIRSF004669 1 89 5.8E-31 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 PANTHER PTHR34040 1 89 1.1E-33 T 23-04-2016 THIMO_RS01350 6599150d88fc72c94dd627112e7a3b47 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 7.5E-30 T 23-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 Gene3D G3DSA:2.130.10.10 41 168 9.1E-20 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 Gene3D G3DSA:2.120.10.60 169 300 3.5E-26 T 23-04-2016 THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 209 240 0.01 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 249 285 7.0E-8 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 160 180 0.027 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 66 92 0.0012 T 23-04-2016 IPR011659 WD40-like Beta Propeller THIMO_RS08385 e63fcfce86eaf065c099a7cd49c9914d 313 SUPERFAMILY SSF69304 41 297 6.02E-32 T 23-04-2016 THIMO_RS07770 2087f26ab8f00d3a371d18329c445b76 333 PANTHER PTHR39339 1 332 7.6E-16 T 23-04-2016 THIMO_RS07770 2087f26ab8f00d3a371d18329c445b76 333 SMART SM00880 39 305 2.2E-58 T 23-04-2016 IPR007899 CHAD domain THIMO_RS07770 2087f26ab8f00d3a371d18329c445b76 333 PANTHER PTHR39339:SF1 1 332 7.6E-16 T 23-04-2016 THIMO_RS07770 2087f26ab8f00d3a371d18329c445b76 333 Pfam PF05235 CHAD domain 40 270 4.5E-49 T 23-04-2016 IPR007899 CHAD domain THIMO_RS01200 6ee90e5354bb72d53b4725956ba6b0b5 86 Gene3D G3DSA:3.30.70.20 13 83 4.7E-16 T 23-04-2016 THIMO_RS01200 6ee90e5354bb72d53b4725956ba6b0b5 86 SUPERFAMILY SSF54862 7 83 3.24E-18 T 23-04-2016 THIMO_RS01200 6ee90e5354bb72d53b4725956ba6b0b5 86 Pfam PF12838 4Fe-4S dicluster domain 20 69 2.1E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS01200 6ee90e5354bb72d53b4725956ba6b0b5 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS01200 6ee90e5354bb72d53b4725956ba6b0b5 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 20 31 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 SUPERFAMILY SSF53850 44 357 9.96E-76 T 23-04-2016 THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 PIRSF PIRSF002756 1 358 1.8E-99 T 23-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 PANTHER PTHR30570 44 358 6.1E-102 T 23-04-2016 THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 PANTHER PTHR30570:SF0 44 358 6.1E-102 T 23-04-2016 THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 Gene3D G3DSA:3.40.190.10 210 354 5.5E-20 T 23-04-2016 THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 Gene3D G3DSA:3.40.190.10 43 187 7.0E-43 T 23-04-2016 THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 Pfam PF12849 PBP superfamily domain 40 329 3.9E-52 T 23-04-2016 IPR024370 PBP domain THIMO_RS05525 30f06ea62e342874aa89ffd5dcbf0fa2 358 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 44 357 4.3E-99 T 23-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 THIMO_RS00230 88c290c4f87fbb885e58d41948bfcd83 363 Pfam PF11104 Type IV pilus assembly protein PilM; 94 175 5.2E-7 T 23-04-2016 IPR005883 Type IV pilus assembly protein PilM THIMO_RS00230 88c290c4f87fbb885e58d41948bfcd83 363 SUPERFAMILY SSF53067 91 187 7.9E-15 T 23-04-2016 THIMO_RS00230 88c290c4f87fbb885e58d41948bfcd83 363 Pfam PF05137 Fimbrial assembly protein (PilN) 285 355 1.2E-6 T 23-04-2016 IPR007813 Fimbrial assembly PilN THIMO_RS07740 affe960dfaddfbfc696b5209b6efb839 208 SUPERFAMILY SSF52540 34 148 1.49E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07740 affe960dfaddfbfc696b5209b6efb839 208 Gene3D G3DSA:3.40.50.300 33 196 1.7E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07740 affe960dfaddfbfc696b5209b6efb839 208 Pfam PF00154 recA bacterial DNA recombination protein 33 120 3.3E-7 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11615 5d6022c00c0763d8e619a0f94c357622 135 Gene3D G3DSA:1.10.10.10 87 131 1.2E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11615 5d6022c00c0763d8e619a0f94c357622 135 Gene3D G3DSA:1.10.10.10 40 81 3.5E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS11615 5d6022c00c0763d8e619a0f94c357622 135 PANTHER PTHR33602 1 131 4.1E-35 T 23-04-2016 THIMO_RS11615 5d6022c00c0763d8e619a0f94c357622 135 Pfam PF02631 RecX family 16 131 6.4E-26 T 23-04-2016 IPR003783 Regulatory protein RecX GO:0006282 THIMO_RS11615 5d6022c00c0763d8e619a0f94c357622 135 PANTHER PTHR33602:SF1 1 131 4.1E-35 T 23-04-2016 THIMO_RS11615 5d6022c00c0763d8e619a0f94c357622 135 Gene3D G3DSA:1.10.10.10 1 39 1.0E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06615 29f9ab98b1e41b6f222432a2c28aa888 92 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 5 91 4.1E-7 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin THIMO_RS06615 29f9ab98b1e41b6f222432a2c28aa888 92 SUPERFAMILY SSF143011 1 91 1.44E-14 T 23-04-2016 THIMO_RS16740 48f08866180a120a09d2e74132508c06 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 1.2E-177 T 23-04-2016 IPR006698 Uncharacterised protein family UPF0229 THIMO_RS16740 48f08866180a120a09d2e74132508c06 423 SUPERFAMILY SSF53300 253 356 1.84E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS16740 48f08866180a120a09d2e74132508c06 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 38.689 T 23-04-2016 IPR006698 Uncharacterised protein family UPF0229 THIMO_RS16740 48f08866180a120a09d2e74132508c06 423 PANTHER PTHR30510 1 422 1.5E-157 T 23-04-2016 THIMO_RS11485 5ae23a1a930f1ccbc1fe7604438ac767 82 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 28 79 5.9E-16 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 THIMO_RS01720 540b2e4a8447f1e8d600040d8dd0d9a0 377 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 4 375 1.5E-117 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 THIMO_RS01720 540b2e4a8447f1e8d600040d8dd0d9a0 377 PANTHER PTHR30365:SF6 1 377 1.8E-124 T 23-04-2016 THIMO_RS01720 540b2e4a8447f1e8d600040d8dd0d9a0 377 PANTHER PTHR30365 1 377 1.8E-124 T 23-04-2016 THIMO_RS01720 540b2e4a8447f1e8d600040d8dd0d9a0 377 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 361 2.0E-93 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 THIMO_RS01720 540b2e4a8447f1e8d600040d8dd0d9a0 377 PIRSF PIRSF000267 3 377 4.8E-102 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 THIMO_RS12295 e7569121144221d9c77f2ccf2c3ebd4b 199 PANTHER PTHR34989 19 195 1.3E-34 T 23-04-2016 THIMO_RS12295 e7569121144221d9c77f2ccf2c3ebd4b 199 PANTHER PTHR34989:SF1 19 195 1.3E-34 T 23-04-2016 THIMO_RS12295 e7569121144221d9c77f2ccf2c3ebd4b 199 Pfam PF03729 Short repeat of unknown function (DUF308) 28 97 8.1E-10 T 23-04-2016 IPR005325 Protein of unknown function DUF308, membrane THIMO_RS12295 e7569121144221d9c77f2ccf2c3ebd4b 199 Pfam PF03729 Short repeat of unknown function (DUF308) 84 152 1.6E-10 T 23-04-2016 IPR005325 Protein of unknown function DUF308, membrane THIMO_RS11215 64f612a0cec88e4e5fec934a1088bbc6 129 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.866 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 THIMO_RS11215 64f612a0cec88e4e5fec934a1088bbc6 129 PANTHER PTHR28259 1 125 2.1E-33 T 23-04-2016 THIMO_RS11215 64f612a0cec88e4e5fec934a1088bbc6 129 TIGRFAM TIGR00494 crcB: protein CrcB 7 117 4.2E-28 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 THIMO_RS11215 64f612a0cec88e4e5fec934a1088bbc6 129 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 2.2E-22 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 THIMO_RS05565 fc2740fc2616c4a4de898d08dbbbdd97 126 Pfam PF03899 ATP synthase I chain 12 106 3.5E-15 T 23-04-2016 IPR005598 ATP synthase protein I THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 Pfam PF13091 PLD-like domain 39 201 1.4E-7 T 23-04-2016 IPR025202 Phospholipase D-like domain THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 SMART SM00490 554 636 1.5E-7 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 Pfam PF00271 Helicase conserved C-terminal domain 514 635 2.7E-10 T 23-04-2016 IPR001650 Helicase, C-terminal THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 SUPERFAMILY SSF52540 496 645 1.55E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 SUPERFAMILY SSF52540 270 422 1.55E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 Gene3D G3DSA:3.40.50.300 512 645 3.3E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 Gene3D G3DSA:3.40.50.300 248 421 1.5E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 PANTHER PTHR11274 552 647 1.5E-37 T 23-04-2016 THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 PANTHER PTHR11274 252 478 1.5E-37 T 23-04-2016 THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 PANTHER PTHR11274 500 536 1.5E-37 T 23-04-2016 THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 Pfam PF04851 Type III restriction enzyme, res subunit 254 421 3.9E-17 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 THIMO_RS12985 9dec618400cc54f1e7a3849347d1f665 707 SMART SM00487 252 459 4.4E-14 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain THIMO_RS05420 8be3979977478703944f3aac7593748d 307 Pfam PF03466 LysR substrate binding domain 87 297 3.3E-40 T 23-04-2016 IPR005119 LysR, substrate-binding THIMO_RS05420 8be3979977478703944f3aac7593748d 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 Gene3D G3DSA:3.40.190.10 176 271 1.7E-22 T 23-04-2016 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 SUPERFAMILY SSF53850 87 301 7.0E-40 T 23-04-2016 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 PANTHER PTHR30346 1 297 1.8E-99 T 23-04-2016 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 Gene3D G3DSA:3.40.190.10 90 175 7.6E-20 T 23-04-2016 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 SUPERFAMILY SSF46785 1 87 3.5E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS05420 8be3979977478703944f3aac7593748d 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.2E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.2E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.2E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 PANTHER PTHR30346:SF15 1 297 1.8E-99 T 23-04-2016 THIMO_RS05420 8be3979977478703944f3aac7593748d 307 Gene3D G3DSA:1.10.10.10 1 85 1.4E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 Gene3D G3DSA:3.20.20.20 14 272 1.3E-106 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 53 66 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 PANTHER PTHR20941:SF1 15 271 7.6E-119 T 23-04-2016 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 Pfam PF00809 Pterin binding enzyme 20 259 3.6E-86 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 19 272 1.2E-99 T 23-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 SUPERFAMILY SSF51717 10 272 6.67E-105 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 PANTHER PTHR20941 15 271 7.6E-119 T 23-04-2016 THIMO_RS12195 b9908be73009ee20ca193409ddcd0a03 275 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 19 34 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 THIMO_RS10660 e22219741d41de8feae657e4c847698f 304 PANTHER PTHR31367 3 303 6.3E-134 T 23-04-2016 THIMO_RS10660 e22219741d41de8feae657e4c847698f 304 PANTHER PTHR31367:SF5 3 303 6.3E-134 T 23-04-2016 THIMO_RS10660 e22219741d41de8feae657e4c847698f 304 Pfam PF06189 5'-nucleotidase 40 303 2.3E-109 T 23-04-2016 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|Reactome: REACT_1698 THIMO_RS11160 b5bdb452f9d412c0f1c186ae3cff9b20 155 PANTHER PTHR12231 25 125 2.8E-14 T 23-04-2016 THIMO_RS11160 b5bdb452f9d412c0f1c186ae3cff9b20 155 Pfam PF00581 Rhodanese-like domain 23 119 2.2E-14 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS11160 b5bdb452f9d412c0f1c186ae3cff9b20 155 Gene3D G3DSA:3.40.250.10 6 128 1.1E-26 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS11160 b5bdb452f9d412c0f1c186ae3cff9b20 155 SUPERFAMILY SSF52821 6 131 8.77E-31 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS11160 b5bdb452f9d412c0f1c186ae3cff9b20 155 SMART SM00450 19 124 1.4E-22 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS12050 150a0a8d9e146c9122df889596634af4 409 Pfam PF02687 FtsX-like permease family 273 401 5.5E-13 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS12050 150a0a8d9e146c9122df889596634af4 409 PANTHER PTHR30489 6 409 4.7E-45 T 23-04-2016 THIMO_RS18255 fd08c87c63e77bf5db011f4614bc28b5 145 Pfam PF00534 Glycosyl transferases group 1 3 112 4.5E-28 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 THIMO_RS18255 fd08c87c63e77bf5db011f4614bc28b5 145 Gene3D G3DSA:3.40.50.2000 3 117 2.4E-20 T 23-04-2016 THIMO_RS18255 fd08c87c63e77bf5db011f4614bc28b5 145 PANTHER PTHR12526 3 140 8.3E-33 T 23-04-2016 THIMO_RS18255 fd08c87c63e77bf5db011f4614bc28b5 145 SUPERFAMILY SSF53756 3 138 6.8E-39 T 23-04-2016 THIMO_RS07550 f8212d299085be8afd06673f6d30c826 325 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 321 1.2E-29 T 23-04-2016 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 THIMO_RS08850 adbebd939ac4e56ad243f8c19dcd99a5 91 PANTHER PTHR33162 1 85 2.9E-17 T 23-04-2016 THIMO_RS08850 adbebd939ac4e56ad243f8c19dcd99a5 91 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 50 1.4E-20 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 THIMO_RS08850 adbebd939ac4e56ad243f8c19dcd99a5 91 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 80 22.231 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 THIMO_RS08850 adbebd939ac4e56ad243f8c19dcd99a5 91 Pfam PF02416 mttA/Hcf106 family 6 57 4.0E-14 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 THIMO_RS11030 c8ecbc2058626ade850b53352980116f 71 PANTHER PTHR34235 2 70 2.9E-17 T 23-04-2016 THIMO_RS11030 c8ecbc2058626ade850b53352980116f 71 Pfam PF01724 Domain of unknown function DUF29 2 67 7.0E-18 T 23-04-2016 IPR002636 Protein from unkown function DUF29 THIMO_RS11030 c8ecbc2058626ade850b53352980116f 71 PANTHER PTHR34235:SF3 2 70 2.9E-17 T 23-04-2016 THIMO_RS08945 b51caba0f7bb722181d55f7d5ecf9622 300 Gene3D G3DSA:3.40.1090.10 10 177 1.3E-9 T 23-04-2016 THIMO_RS08945 b51caba0f7bb722181d55f7d5ecf9622 300 SUPERFAMILY SSF52151 225 266 1.36E-45 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS08945 b51caba0f7bb722181d55f7d5ecf9622 300 SUPERFAMILY SSF52151 7 197 1.36E-45 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS08945 b51caba0f7bb722181d55f7d5ecf9622 300 PANTHER PTHR14226 5 295 4.0E-78 T 23-04-2016 THIMO_RS08945 b51caba0f7bb722181d55f7d5ecf9622 300 PANTHER PTHR14226:SF24 5 295 4.0E-78 T 23-04-2016 THIMO_RS08945 b51caba0f7bb722181d55f7d5ecf9622 300 Pfam PF01734 Patatin-like phospholipase 11 168 1.2E-19 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 Gene3D G3DSA:3.40.50.880 3 189 6.6E-57 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 PANTHER PTHR11019 4 94 9.8E-59 T 23-04-2016 THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 PANTHER PTHR11019 112 145 9.8E-59 T 23-04-2016 THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 6 190 2.2E-55 T 23-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 SUPERFAMILY SSF52317 4 191 6.21E-51 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 Pfam PF01965 DJ-1/PfpI family 4 187 1.1E-51 T 23-04-2016 IPR002818 DJ-1/PfpI THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 PANTHER PTHR11019:SF112 4 94 9.8E-59 T 23-04-2016 THIMO_RS05775 bc6671abffe793c341b267b843a5c8d4 195 PANTHER PTHR11019:SF112 112 145 9.8E-59 T 23-04-2016 THIMO_RS11945 b057efeb1c40d6c70c3729a81e33621b 149 PANTHER PTHR30558 8 147 4.8E-14 T 23-04-2016 THIMO_RS11945 b057efeb1c40d6c70c3729a81e33621b 149 Pfam PF02472 Biopolymer transport protein ExbD/TolR 32 147 5.8E-18 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS06885 bb2b31e785e82c1264cbe150b943fcf2 86 Gene3D G3DSA:1.10.1200.10 2 84 6.5E-10 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS06885 bb2b31e785e82c1264cbe150b943fcf2 86 SUPERFAMILY SSF47336 2 84 9.03E-9 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain THIMO_RS03335 7d4a5ec4f986386ea2822e0e08e03b51 314 PANTHER PTHR34595 1 309 2.2E-77 T 23-04-2016 THIMO_RS03335 7d4a5ec4f986386ea2822e0e08e03b51 314 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 306 7.9E-85 T 23-04-2016 IPR007296 Domain of unknown function DUF403 THIMO_RS15870 d919c72567104ab4874f500afc65a258 113 Pfam PF00462 Glutaredoxin 16 80 3.5E-19 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 THIMO_RS15870 d919c72567104ab4874f500afc65a258 113 PIRSF PIRSF005894 1 107 2.3E-45 T 23-04-2016 IPR014434 Monothiol glutaredoxin THIMO_RS15870 d919c72567104ab4874f500afc65a258 113 Gene3D G3DSA:3.40.30.10 6 101 8.8E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS15870 d919c72567104ab4874f500afc65a258 113 SUPERFAMILY SSF52833 1 102 1.38E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS15870 d919c72567104ab4874f500afc65a258 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 100 6.4E-43 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related THIMO_RS15870 d919c72567104ab4874f500afc65a258 113 PANTHER PTHR10293 5 107 3.4E-52 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related THIMO_RS14060 dacf156331cec33fda4691c55a34ea13 87 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 3 80 3.5E-7 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS14060 dacf156331cec33fda4691c55a34ea13 87 Gene3D G3DSA:3.30.1360.20 3 80 2.2E-12 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS14060 dacf156331cec33fda4691c55a34ea13 87 SUPERFAMILY SSF55248 4 80 4.05E-12 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS16975 f7e0801118d6a626a425dd25444844ca 236 SUPERFAMILY SSF51197 1 187 3.3E-61 T 23-04-2016 THIMO_RS16975 f7e0801118d6a626a425dd25444844ca 236 Gene3D G3DSA:2.60.120.330 2 184 7.4E-54 T 23-04-2016 IPR027443 Isopenicillin N synthase-like THIMO_RS16975 f7e0801118d6a626a425dd25444844ca 236 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 29 168 6.2E-20 T 23-04-2016 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 THIMO_RS14640 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Pfam PF02563 Polysaccharide biosynthesis/export protein 36 109 3.8E-24 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 THIMO_RS14640 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Gene3D G3DSA:3.10.560.10 109 197 4.8E-20 T 23-04-2016 THIMO_RS14640 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Gene3D G3DSA:3.30.1950.10 44 108 1.0E-23 T 23-04-2016 THIMO_RS14640 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Pfam PF10531 SLBB domain 116 168 8.9E-11 T 23-04-2016 IPR019554 Soluble ligand binding domain THIMO_RS14640 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 PANTHER PTHR33619 22 197 3.8E-46 T 23-04-2016 THIMO_RS08670 600c399dd983aad902e1ed83ea85e298 362 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 17 344 4.3E-116 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 THIMO_RS08670 600c399dd983aad902e1ed83ea85e298 362 PIRSF PIRSF005508 4 355 7.1E-116 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 THIMO_RS08670 600c399dd983aad902e1ed83ea85e298 362 Pfam PF01758 Sodium Bile acid symporter family 63 256 3.7E-34 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 THIMO_RS08670 600c399dd983aad902e1ed83ea85e298 362 PANTHER PTHR10361:SF31 17 352 1.0E-113 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 THIMO_RS08670 600c399dd983aad902e1ed83ea85e298 362 PANTHER PTHR10361 17 352 1.0E-113 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 THIMO_RS12645 711401a68433d2f075057d4ad25e42b9 216 Pfam PF05036 Sporulation related domain 139 212 1.3E-15 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS12645 711401a68433d2f075057d4ad25e42b9 216 PANTHER PTHR38687 2 213 2.4E-14 T 23-04-2016 THIMO_RS12645 711401a68433d2f075057d4ad25e42b9 216 SUPERFAMILY SSF110997 139 214 2.09E-14 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS12645 711401a68433d2f075057d4ad25e42b9 216 Gene3D G3DSA:3.30.70.1070 137 213 3.5E-15 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS12645 711401a68433d2f075057d4ad25e42b9 216 PANTHER PTHR38687:SF1 2 213 2.4E-14 T 23-04-2016 THIMO_RS05075 58081011680daa039c70b756778e2c1a 104 Pfam PF08895 Domain of unknown function (DUF1840) 1 101 6.9E-31 T 23-04-2016 IPR014991 Protein of unknown function DUF1840 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 Pfam PF07885 Ion channel 20 100 7.1E-8 T 23-04-2016 IPR013099 Potassium channel domain THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 Pfam PF02254 TrkA-N domain 126 245 2.9E-18 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 Pfam PF02254 TrkA-N domain 292 404 1.8E-19 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 PANTHER PTHR16254 16 286 2.0E-25 T 23-04-2016 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 Gene3D G3DSA:1.10.287.70 15 106 7.0E-10 T 23-04-2016 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 SUPERFAMILY SSF81324 8 147 2.49E-15 T 23-04-2016 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 SUPERFAMILY SSF51735 125 272 1.16E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 PANTHER PTHR16254:SF21 16 286 2.0E-25 T 23-04-2016 THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 SUPERFAMILY SSF51735 288 429 3.39E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 Gene3D G3DSA:3.40.50.720 289 429 1.3E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS08805 fd566cdbaac09c9408ca8c7ecadd8149 575 Gene3D G3DSA:3.40.50.720 126 272 7.1E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 Pfam PF13439 Glycosyltransferase Family 4 15 209 2.8E-11 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 Gene3D G3DSA:3.40.50.2000 200 364 2.1E-21 T 23-04-2016 THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 SUPERFAMILY SSF53756 8 136 4.32E-53 T 23-04-2016 THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 SUPERFAMILY SSF53756 164 398 4.32E-53 T 23-04-2016 THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 PANTHER PTHR12526 167 406 2.7E-37 T 23-04-2016 THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 PANTHER PTHR12526 15 140 2.7E-37 T 23-04-2016 THIMO_RS07255 d523505527aff3fcb5301ca1123c5b77 414 Pfam PF13692 Glycosyl transferases group 1 231 363 1.8E-20 T 23-04-2016 THIMO_RS02705 eff11587e83a4eea9db184c604c09813 267 PANTHER PTHR30269:SF18 5 266 3.3E-76 T 23-04-2016 THIMO_RS02705 eff11587e83a4eea9db184c604c09813 267 Pfam PF01925 Sulfite exporter TauE/SafE 14 265 4.2E-54 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 THIMO_RS02705 eff11587e83a4eea9db184c604c09813 267 PANTHER PTHR30269 5 266 3.3E-76 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 PANTHER PTHR10520 1 426 7.4E-262 T 23-04-2016 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 SMART SM01210 330 423 6.1E-56 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 SUPERFAMILY SSF56059 104 325 9.86E-61 T 23-04-2016 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 3.9E-32 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 SUPERFAMILY SSF51246 329 423 5.76E-34 T 23-04-2016 IPR011054 Rudiment single hybrid motif THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 SMART SM01209 103 296 2.7E-127 T 23-04-2016 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.30.1490.20 121 190 1.2E-26 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 5.8E-35 T 23-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 42.35 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.40.50.20 2 95 3.6E-36 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 23-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 6.8E-75 T 23-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.30.470.20 192 328 2.8E-59 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 6.3E-171 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 SUPERFAMILY SSF52440 1 103 7.48E-36 T 23-04-2016 IPR016185 Pre-ATP-grasp domain THIMO_RS00915 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.90.600.10 331 422 1.0E-36 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 30 423 1.1E-145 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 Gene3D G3DSA:3.40.605.10 392 433 1.3E-100 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 Gene3D G3DSA:3.40.605.10 19 241 1.3E-100 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 Pfam PF00171 Aldehyde dehydrogenase family 319 390 5.9E-7 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 Pfam PF00171 Aldehyde dehydrogenase family 23 299 8.2E-14 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 PANTHER PTHR11063 13 433 2.4E-178 T 23-04-2016 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 340 361 - T 23-04-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 PANTHER PTHR11063:SF8 13 433 2.4E-178 T 23-04-2016 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 22 433 41.798 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 Gene3D G3DSA:3.40.309.10 243 391 6.2E-44 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 PIRSF PIRSF000151 15 434 9.0E-176 T 23-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 THIMO_RS05145 f9401424da43634f63bcc46fb1be8ad7 435 SUPERFAMILY SSF53720 22 433 2.49E-118 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 THIMO_RS18315 25307e6728adab0bcaf312cfa0719573 168 SUPERFAMILY SSF89069 2 47 2.22E-7 T 23-04-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 THIMO_RS18315 25307e6728adab0bcaf312cfa0719573 168 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 62 1.1E-10 T 23-04-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 THIMO_RS05470 0dcf6e9151595533553f5f89584dbcbb 147 SUPERFAMILY SSF53850 33 146 5.16E-14 T 23-04-2016 THIMO_RS05470 0dcf6e9151595533553f5f89584dbcbb 147 Gene3D G3DSA:3.40.190.10 33 146 5.2E-11 T 23-04-2016 THIMO_RS05110 d5c68cb8a211f25eb2452da61137f0fe 254 Pfam PF04909 Amidohydrolase 5 247 5.2E-18 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 THIMO_RS05110 d5c68cb8a211f25eb2452da61137f0fe 254 PANTHER PTHR35563:SF1 1 250 3.0E-31 T 23-04-2016 THIMO_RS05110 d5c68cb8a211f25eb2452da61137f0fe 254 Gene3D G3DSA:3.20.20.140 2 247 3.7E-54 T 23-04-2016 THIMO_RS05110 d5c68cb8a211f25eb2452da61137f0fe 254 PANTHER PTHR35563 1 250 3.0E-31 T 23-04-2016 THIMO_RS05110 d5c68cb8a211f25eb2452da61137f0fe 254 SUPERFAMILY SSF51556 3 247 1.5E-35 T 23-04-2016 IPR032466 Metal-dependent hydrolase THIMO_RS17090 8d1ef5cd456fb004fa4d7916d6708fbe 408 Gene3D G3DSA:2.40.160.10 91 331 5.5E-9 T 23-04-2016 IPR023614 Porin domain THIMO_RS17090 8d1ef5cd456fb004fa4d7916d6708fbe 408 SUPERFAMILY SSF56935 90 406 5.86E-12 T 23-04-2016 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 124 191 4.8E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 PANTHER PTHR18901 1 216 5.1E-56 T 23-04-2016 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 Gene3D G3DSA:3.40.50.1000 87 220 7.6E-44 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 Gene3D G3DSA:3.40.50.1000 2 20 7.6E-44 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 185 8.9E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 4 221 33.594 T 23-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 180 193 1.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 1.1E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 190 4.8E-29 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 Gene3D G3DSA:1.10.150.240 21 86 5.4E-22 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 220 1.1E-64 T 23-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 SUPERFAMILY SSF56784 2 221 1.63E-56 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS17345 62467dec89021f3aaa3d903589e12635 225 PANTHER PTHR18901:SF14 1 216 5.1E-56 T 23-04-2016 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 PANTHER PTHR10992 1 327 4.4E-44 T 23-04-2016 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 Pfam PF12697 Alpha/beta hydrolase family 74 314 4.8E-19 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 SUPERFAMILY SSF53474 42 325 2.91E-55 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 162 175 7.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 112 7.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 7.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 270 284 7.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 THIMO_RS15760 184dfb4a81045f47bbdb3dfece1f021f 332 Gene3D G3DSA:3.40.50.1820 51 325 1.5E-55 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 202 278 1.3E-16 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 SUPERFAMILY SSF74653 112 121 3.14E-22 T 23-04-2016 THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 SUPERFAMILY SSF74653 174 278 3.14E-22 T 23-04-2016 THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 PANTHER PTHR33446:SF2 11 273 2.6E-17 T 23-04-2016 THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 PANTHER PTHR33446 11 273 2.6E-17 T 23-04-2016 THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 200 265 1.6E-16 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 THIMO_RS12220 9d2ddeca0a31d7f6d11a306f28a83053 288 Gene3D G3DSA:3.30.1150.10 169 278 3.7E-24 T 23-04-2016 THIMO_RS05555 b2a9da4e4a098effab19f4741d17edf2 257 Pfam PF13614 AAA domain 3 180 6.3E-58 T 23-04-2016 IPR025669 AAA domain THIMO_RS05555 b2a9da4e4a098effab19f4741d17edf2 257 PANTHER PTHR13696:SF52 1 254 2.4E-85 T 23-04-2016 THIMO_RS05555 b2a9da4e4a098effab19f4741d17edf2 257 Gene3D G3DSA:3.40.50.300 3 255 5.4E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS05555 b2a9da4e4a098effab19f4741d17edf2 257 PANTHER PTHR13696 1 254 2.4E-85 T 23-04-2016 THIMO_RS05555 b2a9da4e4a098effab19f4741d17edf2 257 SUPERFAMILY SSF52540 1 254 1.59E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 SUPERFAMILY SSF53659 4 740 0.0 T 23-04-2016 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 Gene3D G3DSA:3.40.718.10 169 285 2.8E-28 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 Gene3D G3DSA:3.40.718.10 340 363 2.8E-28 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 Gene3D G3DSA:3.40.718.10 539 642 2.8E-28 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 PIRSF PIRSF009407 1 741 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 PANTHER PTHR36999 1 741 0.0 T 23-04-2016 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 3 740 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 THIMO_RS01175 c6894e8f8ee14eb5b4f4157215f6dc29 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 THIMO_RS04810 479adcfc51deaa025610726510f2ac21 112 PANTHER PTHR10108 2 78 4.6E-12 T 23-04-2016 THIMO_RS04810 479adcfc51deaa025610726510f2ac21 112 PANTHER PTHR10108:SF779 2 78 4.6E-12 T 23-04-2016 THIMO_RS04810 479adcfc51deaa025610726510f2ac21 112 Gene3D G3DSA:3.40.50.150 4 80 9.1E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04810 479adcfc51deaa025610726510f2ac21 112 SUPERFAMILY SSF53335 3 95 7.83E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04810 479adcfc51deaa025610726510f2ac21 112 Pfam PF08241 Methyltransferase domain 3 72 2.4E-15 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 52 376 1.9E-123 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 SMART SM00382 46 237 2.2E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 PANTHER PTHR24220:SF481 23 350 3.7E-154 T 23-04-2016 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 PANTHER PTHR24220 23 350 3.7E-154 T 23-04-2016 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 SUPERFAMILY SSF52540 22 261 1.6E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 Pfam PF08402 TOBE domain 296 376 9.9E-17 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 Pfam PF00005 ABC transporter 38 179 3.3E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 Gene3D G3DSA:3.40.50.300 14 255 2.4E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04495 1433fa6582eaf3f2acbd14cf807aa919 378 SUPERFAMILY SSF50331 255 376 4.16E-21 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 76 327 3.5E-60 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 Gene3D G3DSA:3.40.50.300 113 269 5.6E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 Gene3D G3DSA:1.10.40.50 273 330 3.2E-19 T 23-04-2016 THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 PANTHER PTHR32120:SF2 3 328 2.9E-100 T 23-04-2016 THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 42 332 30.396 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 SUPERFAMILY SSF52540 113 329 3.01E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 PANTHER PTHR32120 3 328 2.9E-100 T 23-04-2016 THIMO_RS08615 6b43713843e806f2e8c30a74c7a98324 332 Pfam PF03193 Protein of unknown function, DUF258 97 270 1.1E-43 T 23-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 THIMO_RS11950 d54642e2271dc2b902d4c77eb6b55fa2 137 PANTHER PTHR30558 1 136 9.4E-19 T 23-04-2016 THIMO_RS11950 d54642e2271dc2b902d4c77eb6b55fa2 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 136 1.9E-19 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS02215 10d2ad71ec16bcaabc4f6f0af8715c1a 71 Pfam PF03937 Flavinator of succinate dehydrogenase 1 59 1.6E-15 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase THIMO_RS02215 10d2ad71ec16bcaabc4f6f0af8715c1a 71 SUPERFAMILY SSF109910 1 61 4.18E-13 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase THIMO_RS02215 10d2ad71ec16bcaabc4f6f0af8715c1a 71 Gene3D G3DSA:1.10.150.250 1 64 2.0E-15 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 TIGRFAM TIGR00444 mazG: MazG family protein 13 262 2.0E-93 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 PANTHER PTHR30522 7 268 1.4E-114 T 23-04-2016 THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 PANTHER PTHR30522:SF0 7 268 1.4E-114 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 SUPERFAMILY SSF101386 143 241 3.55E-21 T 23-04-2016 THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 2.0E-29 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 Gene3D G3DSA:1.10.287.1080 24 76 5.5E-9 T 23-04-2016 THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 Gene3D G3DSA:1.10.287.1080 139 223 3.7E-7 T 23-04-2016 THIMO_RS03535 dfca2071b538cd7a2cc6e900d6eddee8 271 SUPERFAMILY SSF101386 5 107 2.04E-26 T 23-04-2016 THIMO_RS04595 40420c92fda304205af8ecb8dcb8e5f4 346 Pfam PF03116 NQR2, RnfD, RnfE family 6 340 3.9E-105 T 23-04-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 THIMO_RS04595 40420c92fda304205af8ecb8dcb8e5f4 346 PANTHER PTHR30578 4 346 1.4E-128 T 23-04-2016 THIMO_RS04595 40420c92fda304205af8ecb8dcb8e5f4 346 PANTHER PTHR30578:SF0 4 346 1.4E-128 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS04595 40420c92fda304205af8ecb8dcb8e5f4 346 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 3 342 27.014 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS04595 40420c92fda304205af8ecb8dcb8e5f4 346 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 341 1.7E-125 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS09550 39092aaf7174312871cafbfacd494ece 227 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 4 164 5.5E-12 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain THIMO_RS09550 39092aaf7174312871cafbfacd494ece 227 PIRSF PIRSF005624 1 193 1.4E-42 T 23-04-2016 THIMO_RS09550 39092aaf7174312871cafbfacd494ece 227 PANTHER PTHR30134 1 202 3.3E-112 T 23-04-2016 THIMO_RS09550 39092aaf7174312871cafbfacd494ece 227 PANTHER PTHR30134:SF1 1 202 3.3E-112 T 23-04-2016 THIMO_RS09550 39092aaf7174312871cafbfacd494ece 227 Gene3D G3DSA:3.40.50.300 2 181 7.4E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09550 39092aaf7174312871cafbfacd494ece 227 SUPERFAMILY SSF52540 4 187 3.01E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS10720 32a4481b0e45c3f89c91e2dbfe0df7ed 402 Pfam PF05940 NnrS protein 18 396 1.3E-105 T 23-04-2016 IPR010266 NnrS THIMO_RS11345 3b045b291d68a1767d4d4322089b4bb5 118 Pfam PF07238 PilZ domain 16 105 1.7E-9 T 23-04-2016 IPR009875 PilZ domain GO:0035438 THIMO_RS11565 50a40066cdc2b9283de8ac99f44d4472 258 PANTHER PTHR32251 1 256 6.6E-73 T 23-04-2016 THIMO_RS11565 50a40066cdc2b9283de8ac99f44d4472 258 Pfam PF06966 Protein of unknown function (DUF1295) 21 247 4.3E-71 T 23-04-2016 IPR010721 Protein of unknown function DUF1295 THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 Gene3D G3DSA:1.10.645.10 230 353 2.0E-14 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 Gene3D G3DSA:1.10.645.10 4 229 1.4E-40 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 41 52 - T 23-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 119 284 5.3E-56 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 290 367 1.4E-11 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 SUPERFAMILY SSF56762 14 367 2.88E-99 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 PANTHER PTHR11993 3 362 4.8E-124 T 23-04-2016 THIMO_RS11535 07d58b069a1b8923fa9de0762c59fe02 367 PANTHER PTHR11993:SF10 3 362 4.8E-124 T 23-04-2016 THIMO_RS16660 242778150944e5e6d8fc6008295e61d3 132 Pfam PF00460 Flagella basal body rod protein 15 39 4.1E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 THIMO_RS16660 242778150944e5e6d8fc6008295e61d3 132 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 9 130 2.5E-31 T 23-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 THIMO_RS16660 242778150944e5e6d8fc6008295e61d3 132 PIRSF PIRSF002889 1 132 1.7E-39 T 23-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 THIMO_RS16660 242778150944e5e6d8fc6008295e61d3 132 PANTHER PTHR30435:SF12 3 132 1.4E-37 T 23-04-2016 THIMO_RS16660 242778150944e5e6d8fc6008295e61d3 132 PANTHER PTHR30435 3 132 1.4E-37 T 23-04-2016 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 70.538 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 SUPERFAMILY SSF50692 1 121 2.24E-47 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 122 2.0E-43 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 3.2E-50 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 PANTHER PTHR21012:SF0 2 126 7.6E-66 T 23-04-2016 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 Gene3D G3DSA:2.40.40.20 1 124 1.7E-53 T 23-04-2016 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 Pfam PF02261 Aspartate decarboxylase 1 114 6.2E-49 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 PIRSF PIRSF006246 1 125 3.1E-50 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 THIMO_RS16715 024844d52c395b6ca2fca3ab6ff67c78 126 PANTHER PTHR21012 2 126 7.6E-66 T 23-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 THIMO_RS12880 5ea38db5e49b6ec293e66b71ca10c82a 495 PANTHER PTHR30250 1 459 2.9E-23 T 23-04-2016 THIMO_RS12880 5ea38db5e49b6ec293e66b71ca10c82a 495 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 352 481 5.8E-8 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain THIMO_RS12880 5ea38db5e49b6ec293e66b71ca10c82a 495 PANTHER PTHR30250:SF8 1 459 2.9E-23 T 23-04-2016 THIMO_RS12880 5ea38db5e49b6ec293e66b71ca10c82a 495 Pfam PF01943 Polysaccharide biosynthesis protein 10 287 1.8E-7 T 23-04-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 SUPERFAMILY SSF52266 271 327 3.24E-11 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 SUPERFAMILY SSF52266 7 49 3.24E-11 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 SUPERFAMILY SSF52266 372 394 3.24E-11 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 SUPERFAMILY SSF52266 152 242 3.24E-11 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 12 387 3.9E-8 T 23-04-2016 IPR001087 GDSL lipase/esterase GO:0016788 THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 Gene3D G3DSA:3.40.50.1110 370 394 2.8E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 Gene3D G3DSA:3.40.50.1110 11 48 2.8E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS12415 80d91a9316b7fdc9e9b9ff36691c3da2 461 Gene3D G3DSA:3.40.50.1110 141 325 2.8E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain THIMO_RS10065 6585b615c5323b0b019405c740330377 258 PANTHER PTHR30413:SF2 5 257 9.9E-135 T 23-04-2016 THIMO_RS10065 6585b615c5323b0b019405c740330377 258 Pfam PF01061 ABC-2 type transporter 13 220 1.2E-35 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 THIMO_RS10065 6585b615c5323b0b019405c740330377 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 60 82 6.1E-7 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 THIMO_RS10065 6585b615c5323b0b019405c740330377 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 198 217 6.1E-7 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 THIMO_RS10065 6585b615c5323b0b019405c740330377 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 178 197 6.1E-7 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 THIMO_RS10065 6585b615c5323b0b019405c740330377 258 PIRSF PIRSF006648 2 255 3.1E-24 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 THIMO_RS10065 6585b615c5323b0b019405c740330377 258 PANTHER PTHR30413 5 257 9.9E-135 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 THIMO_RS00560 afefabe81a5df62b395d8153d800c9d3 125 SUPERFAMILY SSF53146 1 103 1.44E-18 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS00560 afefabe81a5df62b395d8153d800c9d3 125 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 99 5.9E-6 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS00560 afefabe81a5df62b395d8153d800c9d3 125 Gene3D G3DSA:3.30.420.130 1 103 6.3E-14 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 Gene3D G3DSA:1.10.12.10 227 275 1.7E-27 T 23-04-2016 IPR014748 Crontonase, C-terminal THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 18 286 53.508 T 23-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 125 145 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 SUPERFAMILY SSF52096 22 283 3.27E-77 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 Gene3D G3DSA:3.90.226.10 26 224 2.8E-67 T 23-04-2016 IPR029045 ClpP/crotonase-like domain THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 TIGRFAM TIGR01929 menB: naphthoate synthase 26 283 2.0E-129 T 23-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 PANTHER PTHR11941 14 280 2.9E-174 T 23-04-2016 THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 Pfam PF00378 Enoyl-CoA hydratase/isomerase 34 281 9.0E-77 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 THIMO_RS15780 947a1f30b55a69448f66fb6d68b52115 287 PANTHER PTHR11941:SF20 14 280 2.9E-174 T 23-04-2016 THIMO_RS12750 60cc40b58b6af230f46f58c8866052fc 121 SUPERFAMILY SSF46785 51 107 3.01E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS07115 3b6db7917ab506cb1fbe1d9ac4270f86 206 Pfam PF01813 ATP synthase subunit D 15 202 1.9E-40 T 23-04-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 THIMO_RS07115 3b6db7917ab506cb1fbe1d9ac4270f86 206 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 7 204 4.6E-27 T 23-04-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 THIMO_RS07115 3b6db7917ab506cb1fbe1d9ac4270f86 206 PANTHER PTHR11671 1 204 1.1E-25 T 23-04-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 THIMO_RS07115 3b6db7917ab506cb1fbe1d9ac4270f86 206 PANTHER PTHR11671:SF2 1 204 1.1E-25 T 23-04-2016 THIMO_RS02910 1f18434ea9545540f5d8e3a73db5a0cb 306 Gene3D G3DSA:3.60.40.10 8 172 3.2E-5 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS02910 1f18434ea9545540f5d8e3a73db5a0cb 306 Pfam PF13672 Protein phosphatase 2C 17 259 3.4E-43 T 23-04-2016 THIMO_RS02910 1f18434ea9545540f5d8e3a73db5a0cb 306 SUPERFAMILY SSF81606 130 274 3.01E-11 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS02910 1f18434ea9545540f5d8e3a73db5a0cb 306 SUPERFAMILY SSF81606 19 82 3.01E-11 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 SUPERFAMILY SSF63562 1 75 1.57E-24 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 SMART SM01409 8 60 1.3E-17 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 PANTHER PTHR34476 2 90 6.9E-25 T 23-04-2016 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 17.682 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 Pfam PF01192 RNA polymerase Rpb6 8 58 4.8E-16 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 Gene3D G3DSA:3.90.940.10 1 76 8.5E-17 T 23-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS03630 30132eaa906e11eedb0fafed0ade7553 95 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 4.7E-23 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 Pfam PF00035 Double-stranded RNA binding motif 154 221 5.9E-12 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 221 6.2E-70 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 SMART SM00535 19 147 3.5E-50 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 PANTHER PTHR11207 4 225 4.1E-81 T 23-04-2016 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 SMART SM00358 154 222 1.6E-19 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 Hamap MF_00104 Ribonuclease 3 [rnc]. 7 218 29.534 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 Gene3D G3DSA:3.30.160.20 152 221 4.3E-23 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 Gene3D G3DSA:1.10.1520.10 3 144 5.1E-45 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 ProSitePatterns PS00517 Ribonuclease III family signature. 36 44 - T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 Pfam PF14622 Ribonuclease-III-like 17 135 1.4E-33 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 SUPERFAMILY SSF69065 3 156 2.44E-45 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 THIMO_RS08750 14ace159717eff8b90afa4caaa935b7c 225 SUPERFAMILY SSF54768 107 221 5.5E-24 T 23-04-2016 THIMO_RS17190 2fbcff236fdb108b5ee6958b581db171 318 PIRSF PIRSF003097 19 314 1.1E-63 T 23-04-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 THIMO_RS17190 2fbcff236fdb108b5ee6958b581db171 318 Pfam PF02687 FtsX-like permease family 194 310 1.9E-9 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS00115 d2fec006ed9da4ea8cb79928bfe59556 318 Pfam PF13480 Acetyltransferase (GNAT) domain 149 266 4.4E-16 T 23-04-2016 THIMO_RS00115 d2fec006ed9da4ea8cb79928bfe59556 318 Gene3D G3DSA:3.40.630.30 137 266 7.8E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS00115 d2fec006ed9da4ea8cb79928bfe59556 318 SUPERFAMILY SSF55729 141 299 9.8E-24 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 Gene3D G3DSA:1.10.443.10 125 324 2.7E-39 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 PANTHER PTHR30349:SF28 217 326 4.8E-108 T 23-04-2016 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 PANTHER PTHR30349:SF28 27 199 4.8E-108 T 23-04-2016 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 TIGRFAM TIGR02249 integrase_gron: integron integrase 25 338 1.7E-133 T 23-04-2016 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 SUPERFAMILY SSF56349 30 324 4.71E-38 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 24 105 3.2E-26 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 Pfam PF00589 Phage integrase family 129 323 3.6E-36 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 Gene3D G3DSA:1.10.150.130 33 101 3.7E-5 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 PANTHER PTHR30349 217 326 4.8E-108 T 23-04-2016 THIMO_RS12310 9fcaa6c063623e84b9487774e22127d3 341 PANTHER PTHR30349 27 199 4.8E-108 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 PANTHER PTHR41533 35 551 1.5E-111 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 Gene3D G3DSA:1.10.101.10 203 285 1.4E-18 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 SUPERFAMILY SSF141523 409 458 7.46E-18 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 SUPERFAMILY SSF141523 300 356 7.46E-18 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 PANTHER PTHR41533:SF1 35 551 1.5E-111 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 SUPERFAMILY SSF47090 200 283 4.16E-15 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 Gene3D G3DSA:2.40.440.10 300 347 1.2E-7 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 Gene3D G3DSA:2.40.440.10 411 458 1.2E-7 T 23-04-2016 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 Pfam PF03734 L,D-transpeptidase catalytic domain 304 468 3.3E-32 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS16750 c5eb1b284ab9e661adfc3a6e762ee382 558 Pfam PF01471 Putative peptidoglycan binding domain 221 275 1.4E-9 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS09290 6e8330a1d961fbdd543980873c15b6db 508 PANTHER PTHR23077 97 495 3.7E-106 T 23-04-2016 THIMO_RS09290 6e8330a1d961fbdd543980873c15b6db 508 SMART SM00382 262 395 8.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS09290 6e8330a1d961fbdd543980873c15b6db 508 Gene3D G3DSA:3.40.50.300 254 432 3.7E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09290 6e8330a1d961fbdd543980873c15b6db 508 PANTHER PTHR23077:SF75 97 495 3.7E-106 T 23-04-2016 THIMO_RS09290 6e8330a1d961fbdd543980873c15b6db 508 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 266 392 3.5E-25 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 THIMO_RS09290 6e8330a1d961fbdd543980873c15b6db 508 SUPERFAMILY SSF52540 231 456 1.21E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18045 aa9334cffe5adc0adeaa351784e1c2ec 158 Pfam PF04347 Flagellar biosynthesis protein, FliO 73 133 3.5E-12 T 23-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 THIMO_RS18045 aa9334cffe5adc0adeaa351784e1c2ec 158 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 61 125 2.9E-16 T 23-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 9.7E-11 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 371 385 9.7E-11 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 387 405 9.7E-11 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 169 197 9.7E-11 T 23-04-2016 IPR003004 GspF/PilC family THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 PANTHER PTHR30012:SF0 2 394 1.1E-100 T 23-04-2016 THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 169 197 - T 23-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 Pfam PF00482 Type II secretion system (T2SS), protein F 75 197 8.5E-27 T 23-04-2016 IPR018076 Type II secretion system F domain THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 Pfam PF00482 Type II secretion system (T2SS), protein F 279 396 1.4E-23 T 23-04-2016 IPR018076 Type II secretion system F domain THIMO_RS03120 aa68bbad07fe4efb96b551eae3bd9d4e 405 PANTHER PTHR30012 2 394 1.1E-100 T 23-04-2016 THIMO_RS09220 118cc26147a13c76e0b659351aec1238 152 SUPERFAMILY SSF52821 14 148 4.19E-22 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS09220 118cc26147a13c76e0b659351aec1238 152 Pfam PF00581 Rhodanese-like domain 36 131 4.4E-9 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS09220 118cc26147a13c76e0b659351aec1238 152 SMART SM00450 34 145 4.4E-8 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS09220 118cc26147a13c76e0b659351aec1238 152 Gene3D G3DSA:3.40.250.10 33 148 1.7E-26 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS06930 e08b1894504e81b460cc46540ca53ad3 237 SUPERFAMILY SSF88713 22 151 4.7E-13 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 THIMO_RS06930 e08b1894504e81b460cc46540ca53ad3 237 Gene3D G3DSA:3.20.20.370 24 150 9.1E-9 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 THIMO_RS06930 e08b1894504e81b460cc46540ca53ad3 237 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 8 146 2.0E-7 T 23-04-2016 IPR018763 Protein of unknown function DUF2334 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PANTHER PTHR30081 226 284 4.6E-189 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PANTHER PTHR30081 1 173 4.6E-189 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PANTHER PTHR30081 315 616 4.6E-189 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 Pfam PF02355 Protein export membrane protein 437 604 8.7E-21 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 604 9.2E-146 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PANTHER PTHR30081:SF1 226 284 4.6E-189 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PANTHER PTHR30081:SF1 1 173 4.6E-189 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PANTHER PTHR30081:SF1 315 616 4.6E-189 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 SUPERFAMILY SSF82866 414 609 1.44E-43 T 23-04-2016 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 617 46.495 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 Pfam PF07549 SecD/SecF GG Motif 119 140 5.3E-4 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PRINTS PR00702 Acriflavin resistance protein family signature 506 530 9.7E-6 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PRINTS PR00702 Acriflavin resistance protein family signature 581 604 9.7E-6 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 PRINTS PR00702 Acriflavin resistance protein family signature 453 476 9.7E-6 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 348 597 4.1E-79 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 Pfam PF13721 SecD export protein N-terminal TM region 1 103 1.8E-27 T 23-04-2016 IPR027398 SecD export protein N-terminal TM domain THIMO_RS05050 7876d1bba1bf716041e4110526f86162 618 Gene3D G3DSA:1.20.1640.10 428 600 2.0E-25 T 23-04-2016 THIMO_RS06575 62cef3d3012684fdb332aff650cd33db 248 Pfam PF06764 Protein of unknown function (DUF1223) 37 231 4.5E-50 T 23-04-2016 IPR010634 Protein of unknown function DUF1223 THIMO_RS06575 62cef3d3012684fdb332aff650cd33db 248 SUPERFAMILY SSF52833 32 244 2.12E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS06575 62cef3d3012684fdb332aff650cd33db 248 PANTHER PTHR36057:SF1 35 194 6.7E-26 T 23-04-2016 THIMO_RS06575 62cef3d3012684fdb332aff650cd33db 248 Gene3D G3DSA:2.60.40.320 138 246 1.8E-4 T 23-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 THIMO_RS06575 62cef3d3012684fdb332aff650cd33db 248 PANTHER PTHR36057 35 194 6.7E-26 T 23-04-2016 THIMO_RS15375 76ada4043e843c2b2b417b8bb55be85a 181 Gene3D G3DSA:1.25.40.10 43 146 2.9E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS15375 76ada4043e843c2b2b417b8bb55be85a 181 SUPERFAMILY SSF48452 41 155 3.5E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16400 84c94660d863d5ee839ebe72324307f4 231 SMART SM00953 85 209 2.1E-28 T 23-04-2016 IPR014914 RES domain THIMO_RS16400 84c94660d863d5ee839ebe72324307f4 231 Pfam PF08808 RES domain 82 217 3.0E-25 T 23-04-2016 IPR014914 RES domain THIMO_RS00395 c74ac08bd6c06634084b7356ac018151 189 Pfam PF05137 Fimbrial assembly protein (PilN) 100 175 3.9E-21 T 23-04-2016 IPR007813 Fimbrial assembly PilN THIMO_RS00395 c74ac08bd6c06634084b7356ac018151 189 PANTHER PTHR40278:SF1 1 189 2.3E-46 T 23-04-2016 THIMO_RS00395 c74ac08bd6c06634084b7356ac018151 189 PANTHER PTHR40278 1 189 2.3E-46 T 23-04-2016 THIMO_RS10770 cad917691299988ae2bed2d5dca1438f 303 Pfam PF00665 Integrase core domain 128 244 3.1E-28 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS10770 cad917691299988ae2bed2d5dca1438f 303 PANTHER PTHR32552 4 293 2.8E-65 T 23-04-2016 THIMO_RS10770 cad917691299988ae2bed2d5dca1438f 303 Pfam PF13276 HTH-like domain 47 103 3.9E-15 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS10770 cad917691299988ae2bed2d5dca1438f 303 Gene3D G3DSA:3.30.420.10 122 284 1.0E-36 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10770 cad917691299988ae2bed2d5dca1438f 303 SUPERFAMILY SSF53098 122 286 6.53E-38 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 PANTHER PTHR11670 1 208 3.8E-99 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 Gene3D G3DSA:3.20.19.10 3 203 5.8E-48 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 PANTHER PTHR11670:SF27 1 208 3.8E-99 T 23-04-2016 THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 SUPERFAMILY SSF52016 2 202 2.75E-59 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.35 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 9.0E-81 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12695 277a4ea51ae51bc3591200b43993d247 212 Pfam PF00694 Aconitase C-terminal domain 1 132 1.7E-35 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 Gene3D G3DSA:1.20.58.110 3 86 2.0E-32 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 SUPERFAMILY SSF46992 3 86 1.28E-31 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 1.4E-28 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 86 3.0E-23 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.368 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 PANTHER PTHR33398 2 86 3.6E-36 T 23-04-2016 THIMO_RS12705 da84b43e3772fb70d5e0b8445532f787 87 Pfam PF01649 Ribosomal protein S20 2 84 1.2E-28 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS00175 3fced8ebf491e103ade83caecec6b3c3 294 PANTHER PTHR30477 1 270 3.8E-71 T 23-04-2016 THIMO_RS00175 3fced8ebf491e103ade83caecec6b3c3 294 SUPERFAMILY SSF81345 11 262 1.96E-37 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS00175 3fced8ebf491e103ade83caecec6b3c3 294 PANTHER PTHR30477:SF0 1 270 3.8E-71 T 23-04-2016 THIMO_RS00175 3fced8ebf491e103ade83caecec6b3c3 294 Gene3D G3DSA:1.10.3470.10 47 268 8.7E-10 T 23-04-2016 IPR029022 ABC transporter, BtuC-like THIMO_RS00175 3fced8ebf491e103ade83caecec6b3c3 294 Pfam PF00950 ABC 3 transport family 12 266 8.2E-71 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 THIMO_RS02085 79bb1bbf34d8bd126568382f1e8a6b9d 243 SUPERFAMILY SSF50630 143 232 6.1E-9 T 23-04-2016 IPR021109 Aspartic peptidase domain THIMO_RS02085 79bb1bbf34d8bd126568382f1e8a6b9d 243 Pfam PF13650 Aspartyl protease 142 223 3.7E-13 T 23-04-2016 THIMO_RS02085 79bb1bbf34d8bd126568382f1e8a6b9d 243 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 145 156 - T 23-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 253 8.6E-29 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 PANTHER PTHR30085:SF5 1 308 8.4E-174 T 23-04-2016 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 SMART SM00062 35 257 3.1E-52 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 Gene3D G3DSA:3.40.190.10 224 253 3.0E-18 T 23-04-2016 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 Gene3D G3DSA:3.40.190.10 32 125 3.0E-18 T 23-04-2016 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 Gene3D G3DSA:3.40.190.10 126 223 1.8E-11 T 23-04-2016 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 23-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 PANTHER PTHR30085 1 308 8.4E-174 T 23-04-2016 THIMO_RS07370 5646d33b8f4081f7bb392b3819a258f5 339 SUPERFAMILY SSF53850 26 254 3.74E-48 T 23-04-2016 THIMO_RS11890 1a727a9393abd6a92a427fef1ebe1f4c 75 PIRSF PIRSF039008 1 66 7.3E-30 T 23-04-2016 IPR026042 Stress response protein YjbJ THIMO_RS11890 1a727a9393abd6a92a427fef1ebe1f4c 75 Pfam PF05532 CsbD-like 4 56 1.9E-19 T 23-04-2016 IPR008462 CsbD-like THIMO_RS11890 1a727a9393abd6a92a427fef1ebe1f4c 75 SUPERFAMILY SSF69047 1 66 1.57E-23 T 23-04-2016 IPR008462 CsbD-like THIMO_RS11890 1a727a9393abd6a92a427fef1ebe1f4c 75 PANTHER PTHR34977 1 70 6.5E-12 T 23-04-2016 THIMO_RS11890 1a727a9393abd6a92a427fef1ebe1f4c 75 Gene3D G3DSA:1.10.1470.10 1 65 3.5E-26 T 23-04-2016 IPR008462 CsbD-like THIMO_RS10435 03fd991a5d040d6048c4dfdcbe229268 187 Gene3D G3DSA:3.40.30.10 13 139 7.9E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS10435 03fd991a5d040d6048c4dfdcbe229268 187 PANTHER PTHR10681 14 182 4.2E-45 T 23-04-2016 THIMO_RS10435 03fd991a5d040d6048c4dfdcbe229268 187 PANTHER PTHR10681:SF91 14 182 4.2E-45 T 23-04-2016 THIMO_RS10435 03fd991a5d040d6048c4dfdcbe229268 187 SUPERFAMILY SSF52833 6 184 4.21E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS10435 03fd991a5d040d6048c4dfdcbe229268 187 Pfam PF00578 AhpC/TSA family 13 125 2.6E-12 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 283 298 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 56 73 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 PANTHER PTHR11732 7 328 1.4E-110 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 Pfam PF00248 Aldo/keto reductase family 23 314 7.8E-39 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 250 274 2.7E-36 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 174 191 2.7E-36 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 52 76 2.7E-36 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 211 240 2.7E-36 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 Gene3D G3DSA:3.20.20.100 11 321 1.4E-84 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 PIRSF PIRSF000097 5 326 1.0E-62 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 174 191 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 THIMO_RS02275 0472a03c5e28669e0950ffd049415564 330 SUPERFAMILY SSF51430 11 317 6.42E-73 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain THIMO_RS04780 afe843ce4d176dd6e54b813520b6da03 172 Gene3D G3DSA:3.40.50.150 12 132 2.0E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS04780 afe843ce4d176dd6e54b813520b6da03 172 Pfam PF08241 Methyltransferase domain 7 67 3.4E-10 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS04780 afe843ce4d176dd6e54b813520b6da03 172 SUPERFAMILY SSF53335 1 140 5.52E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 SUPERFAMILY SSF53383 11 375 1.75E-104 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 209 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 Gene3D G3DSA:3.90.1150.10 269 375 8.5E-37 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 Gene3D G3DSA:3.40.640.10 23 268 3.4E-61 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 Pfam PF00266 Aminotransferase class-V 29 353 1.0E-35 T 23-04-2016 IPR000192 Aminotransferase class V domain THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 PANTHER PTHR21152 1 375 5.4E-117 T 23-04-2016 THIMO_RS10625 aee05546a27514151ef1eca93679ece9 393 PIRSF PIRSF000524 5 391 4.6E-115 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 THIMO_RS01195 fbb7d0f74490c07152558aa5b33d73f7 292 Pfam PF02754 Cysteine-rich domain 5 85 2.3E-9 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS01195 fbb7d0f74490c07152558aa5b33d73f7 292 Pfam PF02754 Cysteine-rich domain 148 237 3.4E-9 T 23-04-2016 IPR004017 Cysteine-rich domain THIMO_RS01195 fbb7d0f74490c07152558aa5b33d73f7 292 PANTHER PTHR32479:SF12 1 290 5.1E-48 T 23-04-2016 THIMO_RS01195 fbb7d0f74490c07152558aa5b33d73f7 292 PANTHER PTHR32479 1 290 5.1E-48 T 23-04-2016 THIMO_RS13130 2766ade513ce7b868ef42a7a80c51d84 260 Pfam PF02405 Permease MlaE 45 256 6.1E-75 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 THIMO_RS13130 2766ade513ce7b868ef42a7a80c51d84 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 42 258 1.5E-83 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria THIMO_RS13130 2766ade513ce7b868ef42a7a80c51d84 260 PANTHER PTHR30188 1 259 4.3E-106 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 THIMO_RS13130 2766ade513ce7b868ef42a7a80c51d84 260 PANTHER PTHR30188:SF4 1 259 4.3E-106 T 23-04-2016 THIMO_RS16820 1941666a8ef7ac1405753fb7a93e7b77 193 Pfam PF09626 Dihaem cytochrome c 50 178 4.4E-33 T 23-04-2016 IPR018588 Dihaem cytochrome c THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 SUPERFAMILY SSF51905 2 193 8.24E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 Gene3D G3DSA:3.50.50.60 315 396 7.2E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 Gene3D G3DSA:3.50.50.60 2 129 7.2E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632 107 315 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632 369 420 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632 1 88 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632 332 350 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 316 3.8E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632:SF7 107 315 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632:SF7 369 420 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632:SF7 1 88 1.1E-51 T 23-04-2016 THIMO_RS02710 32d2f5e26cf01ae5e918ffcec75b66b8 485 PANTHER PTHR10632:SF7 332 350 1.1E-51 T 23-04-2016 THIMO_RS13770 b0ae87232ba3b61839197a2ed93194bf 206 Pfam PF01613 Flavin reductase like domain 31 160 4.4E-20 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 THIMO_RS13770 b0ae87232ba3b61839197a2ed93194bf 206 PANTHER PTHR30466 24 205 4.1E-19 T 23-04-2016 THIMO_RS13770 b0ae87232ba3b61839197a2ed93194bf 206 SMART SM00903 27 172 7.5E-19 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 THIMO_RS13770 b0ae87232ba3b61839197a2ed93194bf 206 Gene3D G3DSA:2.30.110.10 25 174 2.9E-33 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 THIMO_RS13770 b0ae87232ba3b61839197a2ed93194bf 206 SUPERFAMILY SSF50475 15 165 4.81E-31 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 THIMO_RS02470 0ae97d0ce632510e526f5fd2bc8f7cf0 88 SUPERFAMILY SSF143880 1 78 3.4E-16 T 23-04-2016 IPR018841 Protein of unknown function DUF2442 THIMO_RS02470 0ae97d0ce632510e526f5fd2bc8f7cf0 88 Gene3D G3DSA:3.30.2020.10 1 75 1.1E-12 T 23-04-2016 IPR018841 Protein of unknown function DUF2442 THIMO_RS02470 0ae97d0ce632510e526f5fd2bc8f7cf0 88 Pfam PF10387 Protein of unknown function (DUF2442) 4 74 1.9E-12 T 23-04-2016 IPR018841 Protein of unknown function DUF2442 THIMO_RS05365 87e427cf424b5c1474fe6d66f56a88d1 156 Gene3D G3DSA:3.30.420.10 112 155 2.0E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS05365 87e427cf424b5c1474fe6d66f56a88d1 156 SUPERFAMILY SSF53098 116 156 3.6E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS05365 87e427cf424b5c1474fe6d66f56a88d1 156 Pfam PF13276 HTH-like domain 40 96 6.4E-16 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS05365 87e427cf424b5c1474fe6d66f56a88d1 156 PANTHER PTHR32552 20 156 8.4E-19 T 23-04-2016 THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 314 1.5E-19 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 PANTHER PTHR30469 12 400 8.7E-77 T 23-04-2016 THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 PANTHER PTHR30469:SF15 12 400 8.7E-77 T 23-04-2016 THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 SUPERFAMILY SSF111369 69 319 1.44E-21 T 23-04-2016 THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 68 401 3.5E-54 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 Gene3D G3DSA:2.40.50.100 80 113 6.4E-16 T 23-04-2016 THIMO_RS03055 f6712db01d8d8eac084d82b10f82de8d 406 Gene3D G3DSA:2.40.50.100 202 226 6.4E-16 T 23-04-2016 THIMO_RS07970 85d124c44c6f7161705583393e1d4501 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 340 3.4E-15 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS07970 85d124c44c6f7161705583393e1d4501 365 PANTHER PTHR32347:SF12 55 354 9.4E-58 T 23-04-2016 THIMO_RS07970 85d124c44c6f7161705583393e1d4501 365 SUPERFAMILY SSF111369 199 347 4.84E-9 T 23-04-2016 THIMO_RS07970 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:2.40.50.100 225 256 7.1E-10 T 23-04-2016 THIMO_RS07970 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:2.40.50.100 68 98 7.1E-10 T 23-04-2016 THIMO_RS07970 85d124c44c6f7161705583393e1d4501 365 PANTHER PTHR32347 55 354 9.4E-58 T 23-04-2016 THIMO_RS17175 9916e165acf9081642d007508f3a7624 147 PANTHER PTHR11527 19 147 2.0E-28 T 23-04-2016 IPR031107 Small heat shock protein HSP20 THIMO_RS17175 9916e165acf9081642d007508f3a7624 147 SUPERFAMILY SSF49764 25 146 9.68E-31 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS17175 9916e165acf9081642d007508f3a7624 147 PANTHER PTHR11527:SF122 19 147 2.0E-28 T 23-04-2016 THIMO_RS17175 9916e165acf9081642d007508f3a7624 147 Gene3D G3DSA:2.60.40.790 8 146 1.6E-30 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS17175 9916e165acf9081642d007508f3a7624 147 Pfam PF00011 Hsp20/alpha crystallin family 53 146 1.9E-20 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain THIMO_RS03470 7d9f96be79c1f946948a9618c97f2adc 277 Pfam PF01148 Cytidylyltransferase family 8 271 1.1E-52 T 23-04-2016 THIMO_RS03470 7d9f96be79c1f946948a9618c97f2adc 277 PANTHER PTHR13773 3 268 4.1E-46 T 23-04-2016 THIMO_RS03470 7d9f96be79c1f946948a9618c97f2adc 277 PANTHER PTHR13773:SF0 3 268 4.1E-46 T 23-04-2016 THIMO_RS03470 7d9f96be79c1f946948a9618c97f2adc 277 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 231 257 - T 23-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 PANTHER PTHR30024 9 135 2.1E-49 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 PANTHER PTHR30024 164 267 2.1E-49 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 PANTHER PTHR30024 288 444 2.1E-49 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 PANTHER PTHR30024:SF13 9 135 2.1E-49 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 PANTHER PTHR30024:SF13 164 267 2.1E-49 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 PANTHER PTHR30024:SF13 288 444 2.1E-49 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 Pfam PF16868 NMT1-like family 157 299 1.9E-9 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 SUPERFAMILY SSF53850 154 337 1.56E-33 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 SUPERFAMILY SSF53850 27 125 1.56E-33 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 Gene3D G3DSA:3.40.190.10 273 304 9.5E-9 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 Gene3D G3DSA:3.40.190.10 31 116 9.5E-9 T 23-04-2016 THIMO_RS01090 c2e0415c31589a8826eb575d17fd9ecc 466 Gene3D G3DSA:3.40.190.10 159 271 5.2E-17 T 23-04-2016 THIMO_RS13865 afbeda2804887d41aec29a391122dc98 403 SUPERFAMILY SSF88713 4 299 2.67E-46 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 THIMO_RS13865 afbeda2804887d41aec29a391122dc98 403 Pfam PF03065 Glycosyl hydrolase family 57 87 320 3.9E-23 T 23-04-2016 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 THIMO_RS13865 afbeda2804887d41aec29a391122dc98 403 Gene3D G3DSA:3.20.110.10 85 295 3.8E-21 T 23-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 PANTHER PTHR34875 1 118 3.9E-22 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Pfam PF13740 ACT domain 2 69 2.6E-12 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Pfam PF13740 ACT domain 86 123 9.5E-6 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Gene3D G3DSA:3.30.70.260 2 73 2.1E-20 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 SUPERFAMILY SSF55021 2 73 7.08E-14 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 SUPERFAMILY SSF55021 86 144 7.08E-9 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Gene3D G3DSA:3.30.70.260 86 162 4.5E-13 T 23-04-2016 THIMO_RS10470 db6819fe7bf77954b4e1ac8ba3bb89ed 168 PANTHER PTHR34875:SF3 1 118 3.9E-22 T 23-04-2016 THIMO_RS06780 6615e670205d2d75786aa76024455a87 128 Pfam PF12616 Protein of unknown function (DUF3775) 53 124 1.2E-25 T 23-04-2016 IPR022254 Protein of unknown function DUF3775 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 20 403 6.0E-113 T 23-04-2016 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 Pfam PF01960 ArgJ family 16 403 4.1E-141 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 PANTHER PTHR23100 13 403 1.2E-164 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 Gene3D G3DSA:3.60.70.12 9 274 8.8E-97 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 PANTHER PTHR23100:SF0 13 403 1.2E-164 T 23-04-2016 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 SUPERFAMILY SSF56266 11 400 1.83E-132 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 403 148.757 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 THIMO_RS17415 fe15f17b90879a4b3a19e82d997b3f29 403 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 11 403 1.5E-122 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 Pfam PF13460 NAD(P)H-binding 16 125 2.0E-8 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 PANTHER PTHR10366 11 249 1.9E-47 T 23-04-2016 THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 PANTHER PTHR10366 271 303 1.9E-47 T 23-04-2016 THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 Gene3D G3DSA:3.40.50.720 8 240 2.2E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 PANTHER PTHR10366:SF401 11 249 1.9E-47 T 23-04-2016 THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 PANTHER PTHR10366:SF401 271 303 1.9E-47 T 23-04-2016 THIMO_RS07780 0b37f2a73ef328232e91152a3ed74e1f 476 SUPERFAMILY SSF51735 10 269 1.93E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS11120 0ebb459f2d8a8bb1a05d908c4963ebe9 222 PANTHER PTHR23291:SF37 7 222 2.9E-79 T 23-04-2016 THIMO_RS11120 0ebb459f2d8a8bb1a05d908c4963ebe9 222 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 216 4.8E-44 T 23-04-2016 THIMO_RS11120 0ebb459f2d8a8bb1a05d908c4963ebe9 222 PANTHER PTHR23291 7 222 2.9E-79 T 23-04-2016 IPR006214 Bax inhibitor 1-related THIMO_RS18140 6a14847e9917749a6904207749e14052 157 SUPERFAMILY SSF54523 8 66 3.37E-10 T 23-04-2016 THIMO_RS18140 6a14847e9917749a6904207749e14052 157 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 4.1E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18140 6a14847e9917749a6904207749e14052 157 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS18140 6a14847e9917749a6904207749e14052 157 Pfam PF13633 Prokaryotic N-terminal methylation site 5 29 5.4E-6 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site THIMO_RS11455 f22c6cc4beac68e283bf0419a45c3ff3 301 SUPERFAMILY SSF51445 24 283 2.11E-7 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily THIMO_RS18130 5b0c096012d1ac6f3ce8ae25331cb951 577 Pfam PF13699 Domain of unknown function (DUF4157) 86 163 5.3E-28 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 THIMO_RS15045 0ddb85f4ad8ba23b4b2df7ca75bf9f50 190 Pfam PF13681 Type IV pilus assembly protein PilX C-term 97 183 6.0E-20 T 23-04-2016 IPR025205 PilX/PilW C-terminal domain THIMO_RS15045 0ddb85f4ad8ba23b4b2df7ca75bf9f50 190 Pfam PF14341 PilX N-terminal 12 62 4.0E-17 T 23-04-2016 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain THIMO_RS13015 835e6367b07077a762e51db99585e959 314 PANTHER PTHR33531 162 310 1.5E-15 T 23-04-2016 THIMO_RS13015 835e6367b07077a762e51db99585e959 314 Gene3D G3DSA:1.20.1260.10 161 304 7.5E-27 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS13015 835e6367b07077a762e51db99585e959 314 Gene3D G3DSA:1.20.1260.10 3 158 5.1E-11 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS13015 835e6367b07077a762e51db99585e959 314 PANTHER PTHR33531:SF3 162 310 1.5E-15 T 23-04-2016 THIMO_RS13015 835e6367b07077a762e51db99585e959 314 SUPERFAMILY SSF47240 162 306 3.23E-23 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS13015 835e6367b07077a762e51db99585e959 314 Pfam PF02915 Rubrerythrin 164 222 1.1E-6 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 THIMO_RS13015 835e6367b07077a762e51db99585e959 314 Pfam PF02915 Rubrerythrin 252 305 3.2E-7 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 23-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 Pfam PF01220 Dehydroquinase class II 4 140 1.6E-54 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 152 67.408 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 Gene3D G3DSA:3.40.50.9100 4 145 4.8E-61 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 141 1.1E-55 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 SUPERFAMILY SSF52304 4 147 2.88E-58 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 PIRSF PIRSF001399 1 146 5.8E-54 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 16 133 1.0E-43 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS00875 052b71801730bd9b61a4870df5cf7af9 152 PANTHER PTHR21272 1 150 2.1E-77 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 THIMO_RS07840 52fbba078b006edc589e18e5665cd38f 366 TIGRFAM TIGR01834 PHA_synth_III_E: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit 10 317 5.3E-97 T 23-04-2016 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit THIMO_RS07840 52fbba078b006edc589e18e5665cd38f 366 Pfam PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) 10 306 1.1E-111 T 23-04-2016 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 PRINTS PR00123 ATP synthase A subunit signature 110 126 1.16E-14 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 PRINTS PR00123 ATP synthase A subunit signature 207 229 1.16E-14 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 PRINTS PR00123 ATP synthase A subunit signature 260 275 1.16E-14 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 Pfam PF00119 ATP synthase A chain 53 273 1.2E-53 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 46 274 1.7E-44 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 SUPERFAMILY SSF81336 103 274 1.83E-40 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 Hamap MF_01393 ATP synthase subunit a [atpB]. 13 280 14.992 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 PANTHER PTHR11410:SF7 1 281 3.5E-92 T 23-04-2016 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 PANTHER PTHR11410 1 281 3.5E-92 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 Gene3D G3DSA:1.20.120.220 104 280 2.3E-51 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 THIMO_RS05570 044a9723848e4b1b767bed43c649fd83 281 ProSitePatterns PS00449 ATP synthase a subunit signature. 210 219 - T 23-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site THIMO_RS02870 8b3a9183134a3a52ce7d7fd76a9aaeed 145 PANTHER PTHR34235:SF3 1 145 9.2E-54 T 23-04-2016 THIMO_RS02870 8b3a9183134a3a52ce7d7fd76a9aaeed 145 Pfam PF01724 Domain of unknown function DUF29 6 140 5.3E-49 T 23-04-2016 IPR002636 Protein from unkown function DUF29 THIMO_RS02870 8b3a9183134a3a52ce7d7fd76a9aaeed 145 PANTHER PTHR34235 1 145 9.2E-54 T 23-04-2016 THIMO_RS00705 18c214650b738183e8af983f97822892 136 Gene3D G3DSA:3.40.1260.10 5 136 5.3E-50 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS00705 18c214650b738183e8af983f97822892 136 Pfam PF02635 DsrE/DsrF-like family 6 136 8.0E-24 T 23-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein THIMO_RS00705 18c214650b738183e8af983f97822892 136 SUPERFAMILY SSF75169 5 136 1.02E-38 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS00705 18c214650b738183e8af983f97822892 136 PANTHER PTHR38780 5 136 2.1E-20 T 23-04-2016 THIMO_RS00705 18c214650b738183e8af983f97822892 136 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 7 100 1.3E-30 T 23-04-2016 IPR017462 Sulphur relay, TusC/DsrF THIMO_RS00705 18c214650b738183e8af983f97822892 136 PANTHER PTHR38780:SF1 5 136 2.1E-20 T 23-04-2016 THIMO_RS00515 c9eb9ba1f571d15ee4fe7007a7bcf8a0 346 SUPERFAMILY SSF53187 21 281 4.3E-38 T 23-04-2016 THIMO_RS00515 c9eb9ba1f571d15ee4fe7007a7bcf8a0 346 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 48 212 5.7E-8 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 THIMO_RS00515 c9eb9ba1f571d15ee4fe7007a7bcf8a0 346 Gene3D G3DSA:3.40.630.10 37 199 9.4E-8 T 23-04-2016 THIMO_RS14320 730621967850f34eeb716124eecbb94c 290 SUPERFAMILY SSF159245 2 279 2.22E-52 T 23-04-2016 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 937 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 PIRSF PIRSF000157 2 940 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 Gene3D G3DSA:3.40.50.970 163 522 1.8E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 SUPERFAMILY SSF52518 123 526 1.03E-84 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 PANTHER PTHR23152:SF4 14 946 0.0 T 23-04-2016 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 7.1E-14 T 23-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF00676 Dehydrogenase E1 component 217 521 1.0E-52 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 SMART SM00861 599 792 9.7E-55 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 PANTHER PTHR23152 14 946 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF02779 Transketolase, pyrimidine binding domain 599 792 7.3E-61 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 Gene3D G3DSA:3.40.50.970 599 795 5.2E-24 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 797 938 9.5E-50 T 23-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 THIMO_RS03255 d6c1bbaac82b83d8b08090244a83c949 950 SUPERFAMILY SSF52518 581 799 1.28E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold THIMO_RS15355 7e2ef65fbe118e3ce80d7db656e45327 81 PANTHER PTHR32552 1 80 1.4E-16 T 23-04-2016 THIMO_RS15355 7e2ef65fbe118e3ce80d7db656e45327 81 Gene3D G3DSA:3.30.420.10 1 68 4.8E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS15355 7e2ef65fbe118e3ce80d7db656e45327 81 Pfam PF13683 Integrase core domain 1 68 2.4E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS15355 7e2ef65fbe118e3ce80d7db656e45327 81 SUPERFAMILY SSF53098 1 70 3.22E-13 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS07900 444b2886cac9c8b76dd1b14cffeb4a87 232 Gene3D G3DSA:1.20.950.20 2 182 5.7E-6 T 23-04-2016 THIMO_RS07900 444b2886cac9c8b76dd1b14cffeb4a87 232 Pfam PF01292 Prokaryotic cytochrome b561 8 178 1.3E-17 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS07900 444b2886cac9c8b76dd1b14cffeb4a87 232 SUPERFAMILY SSF81342 4 184 1.83E-31 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 213 3.4E-51 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 Pfam PF01895 PhoU domain 21 108 3.5E-16 T 23-04-2016 IPR026022 PhoU domain THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 Pfam PF01895 PhoU domain 125 207 3.8E-15 T 23-04-2016 IPR026022 PhoU domain THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 Gene3D G3DSA:1.20.58.220 124 214 1.5E-21 T 23-04-2016 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 Gene3D G3DSA:1.20.58.220 2 113 1.9E-22 T 23-04-2016 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 PIRSF PIRSF003107 2 222 5.4E-50 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 PANTHER PTHR10010:SF14 1 226 2.7E-43 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 PANTHER PTHR10010 1 226 2.7E-43 T 23-04-2016 THIMO_RS08180 b4f5872d13035e5b4b49fb558d9385c6 227 SUPERFAMILY SSF109755 7 216 1.78E-47 T 23-04-2016 THIMO_RS06010 aa79723e0daa6c4521d023f178dc8740 184 SUPERFAMILY SSF55821 4 183 4.58E-50 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS06010 aa79723e0daa6c4521d023f178dc8740 184 PANTHER PTHR17490 5 180 3.6E-75 T 23-04-2016 THIMO_RS06010 aa79723e0daa6c4521d023f178dc8740 184 Pfam PF01300 Telomere recombination 12 183 3.8E-40 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 THIMO_RS06010 aa79723e0daa6c4521d023f178dc8740 184 PANTHER PTHR17490:SF8 5 180 3.6E-75 T 23-04-2016 THIMO_RS06010 aa79723e0daa6c4521d023f178dc8740 184 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 183 37.831 T 23-04-2016 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 THIMO_RS06010 aa79723e0daa6c4521d023f178dc8740 184 Gene3D G3DSA:3.90.870.10 3 183 1.5E-52 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain THIMO_RS09395 6fcf4ef760b4c804fcb4de56983d04f6 78 Pfam PF04325 Protein of unknown function (DUF465) 29 74 8.6E-15 T 23-04-2016 IPR007420 Protein of unknown function DUF465 THIMO_RS03925 6064b52e3304ee8237ecb34ea845e68a 293 Pfam PF04654 Protein of unknown function, DUF599 11 212 6.3E-62 T 23-04-2016 IPR006747 Protein of unknown function DUF599 THIMO_RS03925 6064b52e3304ee8237ecb34ea845e68a 293 PANTHER PTHR31168:SF1 1 212 2.4E-48 T 23-04-2016 THIMO_RS03925 6064b52e3304ee8237ecb34ea845e68a 293 PANTHER PTHR31168 1 212 2.4E-48 T 23-04-2016 THIMO_RS09910 7735e10319d5ed3d710fa80141df4e91 306 PANTHER PTHR30465:SF0 1 305 6.8E-124 T 23-04-2016 THIMO_RS09910 7735e10319d5ed3d710fa80141df4e91 306 Gene3D G3DSA:1.10.3720.10 90 301 1.2E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09910 7735e10319d5ed3d710fa80141df4e91 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 1.6E-43 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09910 7735e10319d5ed3d710fa80141df4e91 306 SUPERFAMILY SSF161098 90 290 4.97E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09910 7735e10319d5ed3d710fa80141df4e91 306 PANTHER PTHR30465 1 305 6.8E-124 T 23-04-2016 THIMO_RS18460 6d0c383088074f4eab1954a0cfc44f65 155 SUPERFAMILY SSF55729 4 115 6.67E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS18460 6d0c383088074f4eab1954a0cfc44f65 155 Gene3D G3DSA:3.40.630.30 20 115 5.7E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase THIMO_RS18460 6d0c383088074f4eab1954a0cfc44f65 155 Pfam PF13302 Acetyltransferase (GNAT) domain 4 113 7.2E-15 T 23-04-2016 IPR000182 GNAT domain GO:0008080 THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 PANTHER PTHR30163 36 348 4.4E-134 T 23-04-2016 IPR011757 Lytic transglycosylase MltB THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 Pfam PF13406 Transglycosylase SLT domain 60 344 3.6E-94 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 SUPERFAMILY SSF53955 57 347 2.25E-87 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 54 346 8.0E-105 T 23-04-2016 IPR011757 Lytic transglycosylase MltB THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 PANTHER PTHR30163:SF0 36 348 4.4E-134 T 23-04-2016 THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 Gene3D G3DSA:1.10.530.10 235 347 2.8E-54 T 23-04-2016 THIMO_RS04955 8a32522f6875fd2a47e63eba88eb9159 374 Gene3D G3DSA:1.10.530.10 101 154 2.8E-54 T 23-04-2016 THIMO_RS15150 d71c05be193933c9b0ec425921d85d1a 182 Pfam PF00174 Oxidoreductase molybdopterin binding domain 36 179 1.4E-8 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS15150 d71c05be193933c9b0ec425921d85d1a 182 SUPERFAMILY SSF56524 32 178 1.44E-15 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS15150 d71c05be193933c9b0ec425921d85d1a 182 Gene3D G3DSA:3.90.420.10 33 178 8.6E-9 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 Gene3D G3DSA:1.10.645.10 185 581 1.2E-205 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 Gene3D G3DSA:1.10.645.10 5 141 1.2E-205 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 PANTHER PTHR11993 200 271 5.0E-247 T 23-04-2016 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 PANTHER PTHR11993 10 130 5.0E-247 T 23-04-2016 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 PANTHER PTHR11993 383 588 5.0E-247 T 23-04-2016 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 PANTHER PTHR11993:SF22 200 271 5.0E-247 T 23-04-2016 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 PANTHER PTHR11993:SF22 10 130 5.0E-247 T 23-04-2016 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 PANTHER PTHR11993:SF22 383 588 5.0E-247 T 23-04-2016 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 53 78 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 Pfam PF00374 Nickel-dependent hydrogenase 53 581 2.5E-230 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 572 581 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS15390 fd1fa373e3763b49e2b4a56deb6e3b6b 596 SUPERFAMILY SSF56762 10 581 2.62E-177 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS01155 32c6439d05ed7a69cf4358b5b81d51a9 347 SUPERFAMILY SSF51621 58 277 1.05E-40 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS01155 32c6439d05ed7a69cf4358b5b81d51a9 347 Gene3D G3DSA:3.20.20.60 38 277 3.8E-45 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 THIMO_RS01155 32c6439d05ed7a69cf4358b5b81d51a9 347 PANTHER PTHR11105 1 343 1.4E-44 T 23-04-2016 THIMO_RS01155 32c6439d05ed7a69cf4358b5b81d51a9 347 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 98 270 1.3E-13 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 THIMO_RS07285 88c71a13fc7bec18229a69e1caaeec3d 162 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 28 159 1.4E-35 T 23-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS07285 88c71a13fc7bec18229a69e1caaeec3d 162 Gene3D G3DSA:2.60.40.200 20 160 4.9E-42 T 23-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS07285 88c71a13fc7bec18229a69e1caaeec3d 162 PANTHER PTHR10003:SF11 19 159 9.3E-28 T 23-04-2016 THIMO_RS07285 88c71a13fc7bec18229a69e1caaeec3d 162 PANTHER PTHR10003 19 159 9.3E-28 T 23-04-2016 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone MetaCyc: PWY-6854 THIMO_RS07285 88c71a13fc7bec18229a69e1caaeec3d 162 SUPERFAMILY SSF49329 21 159 7.33E-41 T 23-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 THIMO_RS13005 9ce6167b535c5f38d92d8f94c85178d4 123 SUPERFAMILY SSF88723 5 112 1.18E-23 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS13005 9ce6167b535c5f38d92d8f94c85178d4 123 Gene3D G3DSA:3.40.50.1010 4 111 1.7E-21 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS13005 9ce6167b535c5f38d92d8f94c85178d4 123 Pfam PF01850 PIN domain 7 108 2.9E-12 T 23-04-2016 IPR002716 PIN domain THIMO_RS18490 1056fe34c52401d0078cc591bbe855c8 92 Gene3D G3DSA:3.40.50.2000 1 84 6.3E-6 T 23-04-2016 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 Gene3D G3DSA:3.50.50.60 225 305 8.0E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 Gene3D G3DSA:3.50.50.60 11 68 8.0E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 Gene3D G3DSA:3.50.50.60 133 147 8.0E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 Gene3D G3DSA:3.50.50.60 444 504 8.0E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 PANTHER PTHR10668:SF75 15 504 1.3E-80 T 23-04-2016 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 SUPERFAMILY SSF51905 12 331 2.24E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 SUPERFAMILY SSF51905 463 504 2.24E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 PANTHER PTHR10668 15 504 1.3E-80 T 23-04-2016 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 Pfam PF01593 Flavin containing amine oxidoreductase 23 501 7.0E-17 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 THIMO_RS14315 7cf4df59fcf06e5d0c09a652cd35ce5d 522 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 15 507 2.0E-86 T 23-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 THIMO_RS13900 9d2a2b5add53826c32c9ef85e60f9cb0 297 SMART SM00062 46 285 6.3E-10 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS13900 9d2a2b5add53826c32c9ef85e60f9cb0 297 Gene3D G3DSA:3.40.190.10 49 134 2.4E-20 T 23-04-2016 THIMO_RS13900 9d2a2b5add53826c32c9ef85e60f9cb0 297 Gene3D G3DSA:3.40.190.10 244 282 2.4E-20 T 23-04-2016 THIMO_RS13900 9d2a2b5add53826c32c9ef85e60f9cb0 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 107 282 6.7E-16 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF THIMO_RS13900 9d2a2b5add53826c32c9ef85e60f9cb0 297 SUPERFAMILY SSF53850 3 154 5.87E-29 T 23-04-2016 THIMO_RS13900 9d2a2b5add53826c32c9ef85e60f9cb0 297 SUPERFAMILY SSF53850 182 283 5.87E-29 T 23-04-2016 THIMO_RS11540 f7d884d60a46d15d82144866883acb81 130 PANTHER PTHR10849 16 109 9.4E-20 T 23-04-2016 THIMO_RS11540 f7d884d60a46d15d82144866883acb81 130 PANTHER PTHR10849:SF15 16 109 9.4E-20 T 23-04-2016 THIMO_RS11540 f7d884d60a46d15d82144866883acb81 130 SUPERFAMILY SSF46548 14 102 9.42E-14 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 THIMO_RS11540 f7d884d60a46d15d82144866883acb81 130 Pfam PF12838 4Fe-4S dicluster domain 50 102 1.8E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS11540 f7d884d60a46d15d82144866883acb81 130 Gene3D G3DSA:3.30.70.20 32 107 1.3E-11 T 23-04-2016 THIMO_RS07355 740ba3f4ed988b13615931facb5bebb2 224 PANTHER PTHR22726 17 165 2.6E-21 T 23-04-2016 THIMO_RS07355 740ba3f4ed988b13615931facb5bebb2 224 Pfam PF01435 Peptidase family M48 44 117 8.7E-13 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 THIMO_RS07355 740ba3f4ed988b13615931facb5bebb2 224 Gene3D G3DSA:3.30.2010.10 43 117 1.9E-14 T 23-04-2016 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 130 153 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 198 221 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 75 96 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 110 127 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 28 50 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 154 172 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PRINTS PR00721 Stomatin signature 173 194 1.5E-62 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PANTHER PTHR10264:SF60 7 244 2.1E-111 T 23-04-2016 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 SUPERFAMILY SSF117892 52 185 1.06E-43 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 PANTHER PTHR10264 7 244 2.1E-111 T 23-04-2016 IPR001972 Stomatin family GO:0016020 THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 Pfam PF01145 SPFH domain / Band 7 family 27 194 4.8E-34 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS15820 14310fb6911ed3679e5be9294901007b 259 SMART SM00244 21 178 8.0E-64 T 23-04-2016 IPR001107 Band 7 domain THIMO_RS10580 302605a2ac70b2ddd004e77a1164da7e 125 SMART SM00938 15 108 2.5E-4 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10580 302605a2ac70b2ddd004e77a1164da7e 125 Pfam PF00543 Nitrogen regulatory protein P-II 15 107 6.5E-7 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 THIMO_RS10580 302605a2ac70b2ddd004e77a1164da7e 125 Gene3D G3DSA:3.30.70.120 14 106 3.5E-10 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal THIMO_RS10580 302605a2ac70b2ddd004e77a1164da7e 125 SUPERFAMILY SSF54913 14 106 2.99E-16 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS18195 269b643126ec341758c2f309ac0a157f 105 Pfam PF13440 Polysaccharide biosynthesis protein 6 103 6.4E-8 T 23-04-2016 THIMO_RS12955 799d2c03ba58d63f3f4bf3333d8beff0 294 PIRSF PIRSF030850 2 294 3.8E-45 T 23-04-2016 IPR011396 Uncharacterised conserved protein UCP030850 THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 Gene3D G3DSA:3.90.25.10 238 306 8.1E-45 T 23-04-2016 THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 Gene3D G3DSA:3.90.25.10 154 206 8.1E-45 T 23-04-2016 THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 PANTHER PTHR10366:SF186 1 306 6.4E-101 T 23-04-2016 THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 SUPERFAMILY SSF51735 2 303 6.21E-86 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 Pfam PF16363 GDP-mannose 4,6 dehydratase 2 291 3.5E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 308 2.2E-128 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 Gene3D G3DSA:3.40.50.720 2 153 1.3E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS14910 69f374a7a79207dd136ce43965c9714d 328 PANTHER PTHR10366 1 306 6.4E-101 T 23-04-2016 THIMO_RS10845 5aaa34513af790bb63c4e6fe73e6e33a 116 PANTHER PTHR10263 49 115 9.9E-13 T 23-04-2016 THIMO_RS10845 5aaa34513af790bb63c4e6fe73e6e33a 116 Gene3D G3DSA:1.20.120.610 48 114 2.8E-14 T 23-04-2016 THIMO_RS10845 5aaa34513af790bb63c4e6fe73e6e33a 116 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 90 113 1.4E-9 T 23-04-2016 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 THIMO_RS10845 5aaa34513af790bb63c4e6fe73e6e33a 116 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 63 89 1.4E-9 T 23-04-2016 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 THIMO_RS10845 5aaa34513af790bb63c4e6fe73e6e33a 116 SUPERFAMILY SSF81333 47 113 3.66E-14 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 THIMO_RS10845 5aaa34513af790bb63c4e6fe73e6e33a 116 Pfam PF00137 ATP synthase subunit C 52 111 8.6E-16 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 THIMO_RS09100 925e40731438ca438880de03b45d47ca 540 SUPERFAMILY SSF48208 213 441 3.4E-15 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 THIMO_RS09100 925e40731438ca438880de03b45d47ca 540 Gene3D G3DSA:1.50.10.20 210 427 7.9E-12 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid THIMO_RS09695 24d8329b71c97fc35c20e9cb46c81b45 256 SUPERFAMILY SSF53335 19 242 2.28E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09695 24d8329b71c97fc35c20e9cb46c81b45 256 Gene3D G3DSA:3.40.50.150 21 172 6.6E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09695 24d8329b71c97fc35c20e9cb46c81b45 256 Gene3D G3DSA:3.40.50.150 211 240 6.6E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS09695 24d8329b71c97fc35c20e9cb46c81b45 256 Pfam PF13649 Methyltransferase domain 53 152 1.0E-18 T 23-04-2016 THIMO_RS09695 24d8329b71c97fc35c20e9cb46c81b45 256 PANTHER PTHR16458:SF2 44 168 5.6E-31 T 23-04-2016 THIMO_RS09695 24d8329b71c97fc35c20e9cb46c81b45 256 PANTHER PTHR16458 44 168 5.6E-31 T 23-04-2016 IPR014369 Glycine/Sarcosine N-methyltransferase GO:0017174 THIMO_RS17360 2ed75de823716cd9daf5dbb88c56475a 238 PANTHER PTHR11907:SF9 7 238 3.4E-57 T 23-04-2016 THIMO_RS17360 2ed75de823716cd9daf5dbb88c56475a 238 SUPERFAMILY SSF53271 65 236 2.49E-33 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS17360 2ed75de823716cd9daf5dbb88c56475a 238 PANTHER PTHR11907 7 238 3.4E-57 T 23-04-2016 THIMO_RS17360 2ed75de823716cd9daf5dbb88c56475a 238 Gene3D G3DSA:3.40.50.2020 65 238 8.9E-30 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like THIMO_RS13170 a69c5f356945b79d6386b366c4ec4f3c 111 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 6.8E-29 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS13170 a69c5f356945b79d6386b366c4ec4f3c 111 SUPERFAMILY SSF69754 2 99 1.05E-36 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS13170 a69c5f356945b79d6386b366c4ec4f3c 111 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 1.4E-34 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS13170 a69c5f356945b79d6386b366c4ec4f3c 111 PANTHER PTHR33231 1 96 6.6E-38 T 23-04-2016 THIMO_RS13170 a69c5f356945b79d6386b366c4ec4f3c 111 Gene3D G3DSA:3.30.160.100 1 95 4.3E-37 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 THIMO_RS11785 ea639663d6e9eb0e663b3040cb930e88 239 Gene3D G3DSA:3.30.450.20 50 172 1.7E-18 T 23-04-2016 THIMO_RS11785 ea639663d6e9eb0e663b3040cb930e88 239 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 58 174 3.6E-9 T 23-04-2016 IPR000014 PAS domain THIMO_RS11785 ea639663d6e9eb0e663b3040cb930e88 239 SUPERFAMILY SSF55785 48 171 1.27E-16 T 23-04-2016 IPR000014 PAS domain THIMO_RS11785 ea639663d6e9eb0e663b3040cb930e88 239 SMART SM00091 60 126 1.5E-5 T 23-04-2016 IPR000014 PAS domain THIMO_RS11785 ea639663d6e9eb0e663b3040cb930e88 239 Pfam PF08448 PAS fold 67 175 7.6E-9 T 23-04-2016 IPR013656 PAS fold-4 THIMO_RS04650 133ee34f34054aae8f637b69ca358d60 271 Hamap MF_01805 Segregation and condensation protein A [scpA]. 37 267 21.661 T 23-04-2016 IPR003768 Segregation and condensation protein A THIMO_RS04650 133ee34f34054aae8f637b69ca358d60 271 PANTHER PTHR33969:SF2 21 265 5.5E-92 T 23-04-2016 THIMO_RS04650 133ee34f34054aae8f637b69ca358d60 271 PANTHER PTHR33969 21 265 5.5E-92 T 23-04-2016 THIMO_RS04650 133ee34f34054aae8f637b69ca358d60 271 Pfam PF02616 Segregation and condensation protein ScpA 54 263 7.5E-29 T 23-04-2016 IPR003768 Segregation and condensation protein A THIMO_RS10285 dd2ce2f5a8f28634d0838f6680c7edd2 175 Pfam PF04012 PspA/IM30 family 1 133 1.7E-15 T 23-04-2016 IPR007157 PspA/IM30 THIMO_RS10285 dd2ce2f5a8f28634d0838f6680c7edd2 175 PANTHER PTHR31088 1 129 1.9E-12 T 23-04-2016 THIMO_RS06530 4d33f1540c87645d6758b418995ee10e 77 Pfam PF13488 Glycine zipper 32 72 1.5E-8 T 23-04-2016 THIMO_RS04400 18e935a72ef0561a9efc45ef9f200330 226 Pfam PF06821 Serine hydrolase 5 185 7.8E-54 T 23-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- THIMO_RS04400 18e935a72ef0561a9efc45ef9f200330 226 Gene3D G3DSA:3.40.50.1820 4 186 1.2E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS04400 18e935a72ef0561a9efc45ef9f200330 226 SUPERFAMILY SSF53474 4 183 3.57E-30 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 SUPERFAMILY SSF54197 1 113 1.19E-37 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 PANTHER PTHR23089 3 114 1.9E-56 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 Gene3D G3DSA:3.30.428.10 2 114 6.3E-40 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 PANTHER PTHR23089:SF3 3 114 1.9E-56 T 23-04-2016 THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 PRINTS PR00332 Histidine triad family signature 26 44 1.0E-19 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 PRINTS PR00332 Histidine triad family signature 94 104 1.0E-19 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 PRINTS PR00332 Histidine triad family signature 5 21 1.0E-19 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 23-04-2016 IPR019808 Histidine triad, conserved site THIMO_RS09580 42dc107bf21a51c4d65f7ef938c2b540 114 Pfam PF01230 HIT domain 12 108 5.0E-30 T 23-04-2016 IPR001310 Histidine triad (HIT) protein THIMO_RS01530 e58d23b27aa0a2175c7d306ae7b584d1 467 Pfam PF09700 CRISPR-associated protein (Cas_Cmr3) 6 417 1.9E-35 T 23-04-2016 IPR019117 CRISPR-associated protein, Cmr3 THIMO_RS03270 09c6a3082712a69c6a25eb34309c44c9 137 Pfam PF02036 SCP-2 sterol transfer family 12 104 5.1E-5 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS03270 09c6a3082712a69c6a25eb34309c44c9 137 Gene3D G3DSA:3.30.1050.10 5 108 1.2E-7 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS03270 09c6a3082712a69c6a25eb34309c44c9 137 SUPERFAMILY SSF55718 1 133 1.81E-24 T 23-04-2016 IPR003033 SCP2 sterol-binding domain THIMO_RS05280 43eaa88ef26be80fa931f40cf33f7eef 386 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 147 380 8.4E-64 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria THIMO_RS05280 43eaa88ef26be80fa931f40cf33f7eef 386 Gene3D G3DSA:3.30.750.24 15 106 1.1E-4 T 23-04-2016 IPR002645 STAS domain THIMO_RS05280 43eaa88ef26be80fa931f40cf33f7eef 386 Pfam PF02405 Permease MlaE 173 379 9.7E-70 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 THIMO_RS05280 43eaa88ef26be80fa931f40cf33f7eef 386 PANTHER PTHR30188 46 385 2.7E-78 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 THIMO_RS05280 43eaa88ef26be80fa931f40cf33f7eef 386 PANTHER PTHR30188:SF3 46 385 2.7E-78 T 23-04-2016 THIMO_RS05280 43eaa88ef26be80fa931f40cf33f7eef 386 SUPERFAMILY SSF52091 16 106 1.14E-5 T 23-04-2016 IPR002645 STAS domain THIMO_RS13625 040255bb33bda71333c146be353b9c12 204 PANTHER PTHR10746 17 204 1.5E-73 T 23-04-2016 IPR013005 50S ribosomal protein uL4 THIMO_RS13625 040255bb33bda71333c146be353b9c12 204 Pfam PF00573 Ribosomal protein L4/L1 family 16 202 1.3E-59 T 23-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 THIMO_RS13625 040255bb33bda71333c146be353b9c12 204 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 201 1.1E-69 T 23-04-2016 IPR013005 50S ribosomal protein uL4 THIMO_RS13625 040255bb33bda71333c146be353b9c12 204 Gene3D G3DSA:3.40.1370.10 56 203 6.8E-53 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 THIMO_RS13625 040255bb33bda71333c146be353b9c12 204 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 7 204 32.466 T 23-04-2016 IPR013005 50S ribosomal protein uL4 THIMO_RS13625 040255bb33bda71333c146be353b9c12 204 SUPERFAMILY SSF52166 12 203 4.84E-66 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 THIMO_RS04490 254132e1a59d33e53b3ac10cb15bf302 306 SUPERFAMILY SSF161098 14 298 8.97E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS04490 254132e1a59d33e53b3ac10cb15bf302 306 PANTHER PTHR30193 14 304 3.0E-119 T 23-04-2016 THIMO_RS04490 254132e1a59d33e53b3ac10cb15bf302 306 PANTHER PTHR30193:SF5 14 304 3.0E-119 T 23-04-2016 THIMO_RS04490 254132e1a59d33e53b3ac10cb15bf302 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 291 8.0E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS04490 254132e1a59d33e53b3ac10cb15bf302 306 Gene3D G3DSA:1.10.3720.10 11 296 6.0E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS16545 f929c5f72d3fd3d4b56b6208e951a84e 457 Gene3D G3DSA:1.20.1600.10 58 454 1.3E-74 T 23-04-2016 THIMO_RS16545 f929c5f72d3fd3d4b56b6208e951a84e 457 Pfam PF02321 Outer membrane efflux protein 267 452 1.3E-21 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 THIMO_RS16545 f929c5f72d3fd3d4b56b6208e951a84e 457 Pfam PF02321 Outer membrane efflux protein 69 247 3.8E-24 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 THIMO_RS16545 f929c5f72d3fd3d4b56b6208e951a84e 457 PANTHER PTHR30203 1 454 6.4E-56 T 23-04-2016 THIMO_RS16545 f929c5f72d3fd3d4b56b6208e951a84e 457 SUPERFAMILY SSF56954 11 454 1.96E-75 T 23-04-2016 THIMO_RS02675 333d6a6adfb40997d5a26c26426739a5 166 Pfam PF10504 Protein of unknown function (DUF2452) 17 157 1.1E-51 T 23-04-2016 IPR019534 Protein of unknown function DUF2452 THIMO_RS02675 333d6a6adfb40997d5a26c26426739a5 166 PANTHER PTHR14553 21 157 1.6E-46 T 23-04-2016 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 367 9.3E-76 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 PANTHER PTHR30158 10 372 1.8E-101 T 23-04-2016 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 SUPERFAMILY SSF111369 51 291 2.88E-66 T 23-04-2016 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 PANTHER PTHR30158:SF3 10 372 1.8E-101 T 23-04-2016 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Gene3D G3DSA:2.40.50.100 171 205 1.5E-18 T 23-04-2016 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Gene3D G3DSA:2.40.50.100 63 96 1.5E-18 T 23-04-2016 THIMO_RS14930 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 286 7.9E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain THIMO_RS17280 d132b9d6d2ca3a4ac339c50b7fc138a6 189 PANTHER PTHR37530 8 184 1.5E-26 T 23-04-2016 THIMO_RS17280 d132b9d6d2ca3a4ac339c50b7fc138a6 189 Pfam PF03843 Outer membrane lipoprotein Slp family 27 160 2.0E-29 T 23-04-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 THIMO_RS03680 02c5f05c1f1e07acd3bf7ec23457037a 118 PANTHER PTHR31262 14 114 1.0E-30 T 23-04-2016 THIMO_RS03680 02c5f05c1f1e07acd3bf7ec23457037a 118 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 19 114 1.6E-40 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03680 02c5f05c1f1e07acd3bf7ec23457037a 118 PANTHER PTHR31262:SF0 14 114 1.0E-30 T 23-04-2016 THIMO_RS03680 02c5f05c1f1e07acd3bf7ec23457037a 118 SMART SM00961 18 115 1.1E-52 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03680 02c5f05c1f1e07acd3bf7ec23457037a 118 Gene3D G3DSA:3.30.190.10 16 115 1.3E-42 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03680 02c5f05c1f1e07acd3bf7ec23457037a 118 SUPERFAMILY SSF55239 12 115 4.84E-44 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS13750 e1245a3cc980a686a6757a4077d0ca42 158 SUPERFAMILY SSF56672 18 125 3.67E-10 T 23-04-2016 THIMO_RS15720 5865c04c3193bf6bc24b2366939c41ba 189 PANTHER PTHR34478 1 189 1.0E-74 T 23-04-2016 THIMO_RS15720 5865c04c3193bf6bc24b2366939c41ba 189 Gene3D G3DSA:1.20.1440.20 15 179 9.2E-51 T 23-04-2016 IPR023353 LemA-like domain THIMO_RS15720 5865c04c3193bf6bc24b2366939c41ba 189 Pfam PF04011 LemA family 7 182 2.1E-54 T 23-04-2016 IPR007156 LemA THIMO_RS15720 5865c04c3193bf6bc24b2366939c41ba 189 PANTHER PTHR34478:SF1 1 189 1.0E-74 T 23-04-2016 THIMO_RS15720 5865c04c3193bf6bc24b2366939c41ba 189 SUPERFAMILY SSF140478 26 175 1.96E-43 T 23-04-2016 IPR023353 LemA-like domain THIMO_RS12680 c848dffe2b8c02da8c8340af0f5133ee 937 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 893 936 3.7E-17 T 23-04-2016 IPR020011 Motility protein FimV, C-terminal THIMO_RS12680 c848dffe2b8c02da8c8340af0f5133ee 937 Gene3D G3DSA:1.25.40.10 893 919 5.4E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS12680 c848dffe2b8c02da8c8340af0f5133ee 937 Gene3D G3DSA:1.25.40.10 581 660 5.4E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS12680 c848dffe2b8c02da8c8340af0f5133ee 937 SUPERFAMILY SSF48452 575 657 1.24E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS12680 c848dffe2b8c02da8c8340af0f5133ee 937 Pfam PF14559 Tetratricopeptide repeat 585 651 3.9E-6 T 23-04-2016 THIMO_RS01260 917b72d237b9c2068b2ec2e106d73d7a 112 Gene3D G3DSA:1.20.58.380 15 88 5.1E-5 T 23-04-2016 THIMO_RS01260 917b72d237b9c2068b2ec2e106d73d7a 112 Pfam PF05400 Flagellar protein FliT 26 106 2.8E-14 T 23-04-2016 IPR008622 Flagellar protein FliT THIMO_RS18155 392a9753288872ec923bc3a968fc8d55 221 Pfam PF13701 Transposase DDE domain group 1 27 194 4.0E-12 T 23-04-2016 IPR025668 Transposase DDE domain THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 Gene3D G3DSA:1.25.40.10 181 308 9.0E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 Gene3D G3DSA:1.25.40.10 38 167 2.1E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 384 34.565 T 23-04-2016 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 213 246 3.5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 68 101 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 179 212 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 106 139 20.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 PANTHER PTHR23083 329 342 7.2E-17 T 23-04-2016 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 PANTHER PTHR23083 41 309 7.2E-17 T 23-04-2016 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 Pfam PF13432 Tetratricopeptide repeat 185 242 1.2E-4 T 23-04-2016 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 Pfam PF13176 Tetratricopeptide repeat 70 100 0.0075 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 THIMO_RS08165 674a8e7b9942bd4ec9d19891400394ff 400 SUPERFAMILY SSF48452 38 244 6.45E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS06390 de46d038eb7caf0ec3b2ebc2b7a9cf33 88 PANTHER PTHR34139 4 87 2.1E-24 T 23-04-2016 THIMO_RS06390 de46d038eb7caf0ec3b2ebc2b7a9cf33 88 Gene3D G3DSA:1.20.120.580 34 73 1.5E-4 T 23-04-2016 THIMO_RS06390 de46d038eb7caf0ec3b2ebc2b7a9cf33 88 Pfam PF01934 Protein of unknown function DUF86 2 77 2.0E-17 T 23-04-2016 IPR008201 Protein of unknown function DUF86 THIMO_RS04260 49f31115e178e9eb504acebbb023b3f7 1244 SUPERFAMILY SSF53955 1087 1210 9.0E-15 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS04260 49f31115e178e9eb504acebbb023b3f7 1244 Pfam PF07916 TraG-like protein, N-terminal region 3 456 7.2E-105 T 23-04-2016 IPR012931 TraG-like, N-terminal THIMO_RS04260 49f31115e178e9eb504acebbb023b3f7 1244 Gene3D G3DSA:1.10.530.10 1089 1212 7.3E-16 T 23-04-2016 THIMO_RS11520 9bbacf448f58f2ab2755c81e2f8ca24c 300 PANTHER PTHR11432 16 297 2.5E-63 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS11520 9bbacf448f58f2ab2755c81e2f8ca24c 300 PANTHER PTHR11432:SF9 16 297 2.5E-63 T 23-04-2016 THIMO_RS11520 9bbacf448f58f2ab2755c81e2f8ca24c 300 Pfam PF00146 NADH dehydrogenase 11 296 1.2E-53 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS11090 6ea6f7842ca6e616e5e58d0813d67ec8 151 PANTHER PTHR36115 12 151 1.3E-29 T 23-04-2016 THIMO_RS11090 6ea6f7842ca6e616e5e58d0813d67ec8 151 PANTHER PTHR36115:SF2 12 151 1.3E-29 T 23-04-2016 THIMO_RS11090 6ea6f7842ca6e616e5e58d0813d67ec8 151 Pfam PF06271 RDD family 11 141 1.2E-24 T 23-04-2016 IPR010432 RDD THIMO_RS03745 74c245fff25002291f24c48d6ddfa5be 174 PANTHER PTHR38009:SF1 6 160 5.6E-44 T 23-04-2016 THIMO_RS03745 74c245fff25002291f24c48d6ddfa5be 174 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 12 158 5.7E-46 T 23-04-2016 IPR011747 Conserved hypothetical protein CHP02241 THIMO_RS03745 74c245fff25002291f24c48d6ddfa5be 174 Pfam PF06841 T4-like virus tail tube protein gp19 15 157 1.1E-45 T 23-04-2016 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 THIMO_RS03745 74c245fff25002291f24c48d6ddfa5be 174 PANTHER PTHR38009 6 160 5.6E-44 T 23-04-2016 THIMO_RS06290 d7838a28a67ca2e927dc0e9db9f2bf3b 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.876 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06290 d7838a28a67ca2e927dc0e9db9f2bf3b 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 23-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06290 d7838a28a67ca2e927dc0e9db9f2bf3b 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.7E-42 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS06290 d7838a28a67ca2e927dc0e9db9f2bf3b 104 SUPERFAMILY SSF141091 1 102 2.88E-38 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 THIMO_RS06290 d7838a28a67ca2e927dc0e9db9f2bf3b 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.1E-41 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 THIMO_RS06290 d7838a28a67ca2e927dc0e9db9f2bf3b 104 PANTHER PTHR21349 1 101 1.8E-45 T 23-04-2016 THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 SUPERFAMILY SSF52540 303 479 1.44E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 PANTHER PTHR34383 2 493 7.9E-209 T 23-04-2016 THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 SUPERFAMILY SSF52540 40 222 1.78E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 495 2.7E-202 T 23-04-2016 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 PANTHER PTHR34383:SF3 2 493 7.9E-209 T 23-04-2016 THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 Gene3D G3DSA:3.40.50.300 1 242 1.3E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 Gene3D G3DSA:3.40.50.300 257 496 1.8E-96 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 12 233 2.7E-47 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related THIMO_RS07620 fcc1be7a547303a22816bf0bafd3c6dc 518 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 271 494 1.1E-81 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 PANTHER PTHR30477:SF1 4 113 1.3E-68 T 23-04-2016 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 PANTHER PTHR30477:SF1 135 302 1.3E-68 T 23-04-2016 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 SUPERFAMILY SSF53807 24 304 6.87E-80 T 23-04-2016 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 Gene3D G3DSA:3.40.50.1980 205 304 2.7E-30 T 23-04-2016 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 PANTHER PTHR30477 4 113 1.3E-68 T 23-04-2016 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 PANTHER PTHR30477 135 302 1.3E-68 T 23-04-2016 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 303 5.4E-62 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 THIMO_RS00185 ca55ae50d610baf2503a3cfe5871f2e6 307 Gene3D G3DSA:3.40.50.1980 19 204 7.2E-47 T 23-04-2016 THIMO_RS17530 57301d3335b9b0d3dc8b506b97f07539 499 Gene3D G3DSA:1.10.510.10 144 305 9.7E-15 T 23-04-2016 THIMO_RS17530 57301d3335b9b0d3dc8b506b97f07539 499 Pfam PF00069 Protein kinase domain 150 261 2.9E-8 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 THIMO_RS17530 57301d3335b9b0d3dc8b506b97f07539 499 SUPERFAMILY SSF56112 143 261 2.77E-15 T 23-04-2016 IPR011009 Protein kinase-like domain THIMO_RS04845 5ecb3fb181c62a5e3c7bf0b16a983164 283 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 32 258 1.3E-27 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 SUPERFAMILY SSF116842 12 77 7.98E-20 T 23-04-2016 THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 PANTHER PTHR34137 5 86 1.0E-25 T 23-04-2016 THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 17 73 5.8E-21 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 27 57 6.0E-5 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 17 77 15.884 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 Gene3D G3DSA:1.10.287.1040 14 83 1.1E-25 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS08520 787747a5ba860cf40818cf626e348c0a 86 Pfam PF02609 Exonuclease VII small subunit 18 68 2.8E-19 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 THIMO_RS09195 cad6a8fb5493c7347a744347b90dfa3b 94 PANTHER PTHR24012 1 93 1.3E-32 T 23-04-2016 THIMO_RS09195 cad6a8fb5493c7347a744347b90dfa3b 94 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 1.1E-25 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 THIMO_RS09195 cad6a8fb5493c7347a744347b90dfa3b 94 SUPERFAMILY SSF54928 2 93 3.49E-34 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 THIMO_RS09195 cad6a8fb5493c7347a744347b90dfa3b 94 SMART SM00360 2 75 4.9E-30 T 23-04-2016 IPR000504 RNA recognition motif domain GO:0003676 THIMO_RS09195 cad6a8fb5493c7347a744347b90dfa3b 94 Gene3D G3DSA:3.30.70.330 2 91 3.8E-32 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 THIMO_RS10355 555aac44dce424cf90238778d21591ec 188 PRINTS PR01021 OMPA domain signature 132 148 2.2E-9 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS10355 555aac44dce424cf90238778d21591ec 188 PRINTS PR01021 OMPA domain signature 117 132 2.2E-9 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 THIMO_RS10355 555aac44dce424cf90238778d21591ec 188 Pfam PF00691 OmpA family 81 169 1.3E-14 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS10355 555aac44dce424cf90238778d21591ec 188 Gene3D G3DSA:3.30.1330.60 75 182 2.1E-21 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS10355 555aac44dce424cf90238778d21591ec 188 PANTHER PTHR30128 59 166 6.5E-20 T 23-04-2016 THIMO_RS10355 555aac44dce424cf90238778d21591ec 188 SUPERFAMILY SSF103088 76 184 4.71E-19 T 23-04-2016 IPR006665 OmpA-like domain THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 PANTHER PTHR10283 297 311 2.6E-77 T 23-04-2016 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 PANTHER PTHR10283 7 268 2.6E-77 T 23-04-2016 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 PANTHER PTHR10283 421 657 2.6E-77 T 23-04-2016 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 Gene3D G3DSA:3.30.70.1450 283 353 1.7E-4 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 Gene3D G3DSA:3.30.70.1450 376 456 8.1E-18 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 PANTHER PTHR10283:SF100 297 311 2.6E-77 T 23-04-2016 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 PANTHER PTHR10283:SF100 7 268 2.6E-77 T 23-04-2016 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 PANTHER PTHR10283:SF100 421 657 2.6E-77 T 23-04-2016 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 Pfam PF02080 TrkA-C domain 377 448 2.5E-6 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 SUPERFAMILY SSF116726 375 455 2.35E-13 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 THIMO_RS06270 57fc9ae7812c993772d3b47b17db5cbf 658 Pfam PF03600 Citrate transporter 52 606 1.7E-48 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 PANTHER PTHR11592 26 188 8.2E-64 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 PIRSF PIRSF000303 2 186 7.6E-55 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 Pfam PF00255 Glutathione peroxidase 42 134 3.3E-32 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 Gene3D G3DSA:3.40.30.10 27 181 5.0E-53 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 ProSitePatterns PS00460 Glutathione peroxidases active site. 48 63 - T 23-04-2016 IPR029759 Glutathione peroxidase active site THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 PANTHER PTHR11592:SF40 26 188 8.2E-64 T 23-04-2016 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 PRINTS PR01011 Glutathione peroxidase family signature 81 97 1.3E-16 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 PRINTS PR01011 Glutathione peroxidase family signature 46 63 1.3E-16 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 PRINTS PR01011 Glutathione peroxidase family signature 142 151 1.3E-16 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 THIMO_RS00590 3a42b685872d176c0deb642ea3e72ef6 188 SUPERFAMILY SSF52833 25 180 2.21E-50 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS15310 949bb3fddddefe9315753486b80ee160 105 SMART SM00530 49 103 0.0049 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS15310 949bb3fddddefe9315753486b80ee160 105 PANTHER PTHR36511 9 105 1.9E-28 T 23-04-2016 THIMO_RS15310 949bb3fddddefe9315753486b80ee160 105 Gene3D G3DSA:1.10.260.40 49 101 1.8E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS15310 949bb3fddddefe9315753486b80ee160 105 Pfam PF13560 Helix-turn-helix domain 50 93 6.0E-7 T 23-04-2016 THIMO_RS15310 949bb3fddddefe9315753486b80ee160 105 PANTHER PTHR36511:SF3 9 105 1.9E-28 T 23-04-2016 THIMO_RS15310 949bb3fddddefe9315753486b80ee160 105 SUPERFAMILY SSF47413 48 99 1.64E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS11620 da90969688c40324931983a658bdba57 345 Gene3D G3DSA:3.30.250.10 269 327 8.2E-30 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal THIMO_RS11620 da90969688c40324931983a658bdba57 345 Pfam PF00154 recA bacterial DNA recombination protein 7 269 4.2E-146 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 128 157 2.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 166 195 2.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 211 239 2.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 244 273 2.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 94 123 2.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 298 315 2.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 ProSitePatterns PS00321 recA signature. 214 222 - T 23-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 THIMO_RS11620 da90969688c40324931983a658bdba57 345 PANTHER PTHR22942:SF1 3 336 2.4E-208 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 Gene3D G3DSA:3.40.50.300 36 268 2.4E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11620 da90969688c40324931983a658bdba57 345 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 325 5.7E-175 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 SUPERFAMILY SSF52540 3 268 7.31E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11620 da90969688c40324931983a658bdba57 345 PANTHER PTHR22942 3 336 2.4E-208 T 23-04-2016 THIMO_RS11620 da90969688c40324931983a658bdba57 345 Hamap MF_00268 Protein RecA [recA]. 5 330 52.742 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 THIMO_RS11620 da90969688c40324931983a658bdba57 345 SMART SM00382 58 229 1.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS11620 da90969688c40324931983a658bdba57 345 SUPERFAMILY SSF54752 269 326 3.66E-22 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal THIMO_RS04710 1a711e583704cedd5943a04ee1302bb5 105 Gene3D G3DSA:3.40.50.150 15 101 1.1E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS16165 baa163b74fba04f4afc8ab5fdcd8d9e7 232 Pfam PF13548 Domain of unknown function (DUF4126) 8 180 3.5E-55 T 23-04-2016 IPR025196 Domain of unknown function DUF4126 THIMO_RS01935 cfa8e0f7e16bca7353a17a4d7f13971a 330 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 23 305 2.2E-19 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 Pfam PF04011 LemA family 108 319 4.2E-60 T 23-04-2016 IPR007156 LemA THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 PANTHER PTHR34478:SF2 94 183 1.1E-48 T 23-04-2016 THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 PANTHER PTHR34478:SF2 221 320 1.1E-48 T 23-04-2016 THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 SUPERFAMILY SSF140478 216 308 2.22E-40 T 23-04-2016 IPR023353 LemA-like domain THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 SUPERFAMILY SSF140478 121 175 2.22E-40 T 23-04-2016 IPR023353 LemA-like domain THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 Gene3D G3DSA:1.20.1440.20 216 319 3.0E-52 T 23-04-2016 IPR023353 LemA-like domain THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 Gene3D G3DSA:1.20.1440.20 110 175 3.0E-52 T 23-04-2016 IPR023353 LemA-like domain THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 PANTHER PTHR34478 94 183 1.1E-48 T 23-04-2016 THIMO_RS13035 89d9ad1dccf0c72031de7ac133376e5a 320 PANTHER PTHR34478 221 320 1.1E-48 T 23-04-2016 THIMO_RS11880 07ebaf34bbf9c5035a75ac938d15d7bf 137 PANTHER PTHR34606 60 133 3.2E-15 T 23-04-2016 THIMO_RS11880 07ebaf34bbf9c5035a75ac938d15d7bf 137 Pfam PF04972 BON domain 67 134 8.7E-15 T 23-04-2016 IPR007055 BON domain THIMO_RS11880 07ebaf34bbf9c5035a75ac938d15d7bf 137 SMART SM00749 72 135 4.4E-7 T 23-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria THIMO_RS05330 430071b60df0e5f74b8674e8db51ddef 198 Pfam PF14316 Domain of unknown function (DUF4381) 12 171 2.5E-36 T 23-04-2016 IPR025489 Protein of unknown function (DUF4381 THIMO_RS16925 7f443c1927bdc65cf19b1f89c0b8d025 257 Gene3D G3DSA:3.90.420.10 94 254 7.4E-57 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS16925 7f443c1927bdc65cf19b1f89c0b8d025 257 PANTHER PTHR19372:SF9 25 257 2.3E-53 T 23-04-2016 THIMO_RS16925 7f443c1927bdc65cf19b1f89c0b8d025 257 PANTHER PTHR19372 25 257 2.3E-53 T 23-04-2016 THIMO_RS16925 7f443c1927bdc65cf19b1f89c0b8d025 257 SUPERFAMILY SSF56524 94 256 9.81E-55 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS16925 7f443c1927bdc65cf19b1f89c0b8d025 257 Pfam PF00174 Oxidoreductase molybdopterin binding domain 96 233 2.4E-37 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 THIMO_RS14250 b31ce761c5df804f7795ea8fd5d1a7f1 359 Gene3D G3DSA:1.10.468.10 53 156 1.4E-25 T 23-04-2016 IPR023119 Multihaem cytochrome, photosynthetic reaction centre cytochrome subunit-like THIMO_RS14250 b31ce761c5df804f7795ea8fd5d1a7f1 359 Gene3D G3DSA:1.10.468.10 157 325 5.0E-47 T 23-04-2016 IPR023119 Multihaem cytochrome, photosynthetic reaction centre cytochrome subunit-like THIMO_RS14250 b31ce761c5df804f7795ea8fd5d1a7f1 359 Pfam PF02276 Photosynthetic reaction centre cytochrome C subunit 39 343 4.3E-134 T 23-04-2016 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 THIMO_RS14250 b31ce761c5df804f7795ea8fd5d1a7f1 359 PIRSF PIRSF000017 1 351 2.9E-120 T 23-04-2016 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 THIMO_RS14250 b31ce761c5df804f7795ea8fd5d1a7f1 359 SUPERFAMILY SSF48695 39 344 1.18E-93 T 23-04-2016 IPR011031 Multihaem cytochrome THIMO_RS14145 683210165a0d25e85b24561d4f901991 176 Gene3D G3DSA:2.40.50.140 4 176 1.4E-59 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS14145 683210165a0d25e85b24561d4f901991 176 SUPERFAMILY SSF50249 5 176 2.5E-59 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS14145 683210165a0d25e85b24561d4f901991 176 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.241 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 THIMO_RS14145 683210165a0d25e85b24561d4f901991 176 PANTHER PTHR10302 1 176 9.2E-52 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 THIMO_RS14145 683210165a0d25e85b24561d4f901991 176 Pfam PF00436 Single-strand binding protein family 6 112 1.5E-43 T 23-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 THIMO_RS14145 683210165a0d25e85b24561d4f901991 176 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 176 1.4E-55 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 THIMO_RS15990 e44dc5a06b26fd554360a05ad11e0bef 285 Pfam PF00146 NADH dehydrogenase 14 281 1.7E-36 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS15990 e44dc5a06b26fd554360a05ad11e0bef 285 PANTHER PTHR11432 12 285 9.5E-24 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS04195 2f706da0dcb13de8d0bdb807a6ded312 415 Pfam PF01926 50S ribosome-binding GTPase 52 137 7.5E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 THIMO_RS04195 2f706da0dcb13de8d0bdb807a6ded312 415 Gene3D G3DSA:3.40.50.300 50 153 3.5E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04195 2f706da0dcb13de8d0bdb807a6ded312 415 SUPERFAMILY SSF52540 35 181 7.82E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04195 2f706da0dcb13de8d0bdb807a6ded312 415 Pfam PF05128 Domain of unknown function (DUF697) 266 389 4.2E-6 T 23-04-2016 IPR021147 Protein of unknown function DUF697 THIMO_RS16585 c9f923c48a4358348d76b2db00b5b0be 366 PANTHER PTHR10859:SF84 1 299 1.2E-61 T 23-04-2016 THIMO_RS16585 c9f923c48a4358348d76b2db00b5b0be 366 Gene3D G3DSA:3.90.550.10 21 146 1.3E-8 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16585 c9f923c48a4358348d76b2db00b5b0be 366 Pfam PF04138 GtrA-like protein 249 362 2.2E-6 T 23-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 THIMO_RS16585 c9f923c48a4358348d76b2db00b5b0be 366 SUPERFAMILY SSF53448 14 271 1.13E-22 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS16585 c9f923c48a4358348d76b2db00b5b0be 366 PANTHER PTHR10859 1 299 1.2E-61 T 23-04-2016 THIMO_RS16585 c9f923c48a4358348d76b2db00b5b0be 366 Pfam PF00535 Glycosyl transferase family 2 24 155 9.6E-13 T 23-04-2016 IPR001173 Glycosyltransferase 2-like THIMO_RS09490 bf566f18b7268cb8bb023b8967b6cd42 66 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 39 4.2E-5 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS09490 bf566f18b7268cb8bb023b8967b6cd42 66 Gene3D G3DSA:3.40.1620.10 2 38 1.5E-7 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS09490 bf566f18b7268cb8bb023b8967b6cd42 66 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 63 1.8E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS09490 bf566f18b7268cb8bb023b8967b6cd42 66 SUPERFAMILY SSF143120 4 40 4.45E-8 T 23-04-2016 THIMO_RS03965 ef7b258131866ecb61d7ed6afb70a829 242 PANTHER PTHR30249:SF5 1 242 4.1E-89 T 23-04-2016 THIMO_RS03965 ef7b258131866ecb61d7ed6afb70a829 242 PANTHER PTHR30249 1 242 4.1E-89 T 23-04-2016 THIMO_RS03965 ef7b258131866ecb61d7ed6afb70a829 242 Pfam PF04172 LrgB-like family 23 235 2.5E-78 T 23-04-2016 IPR007300 CidB/LrgB family THIMO_RS01415 c6806cf5b3174e34f901e88ce2ea3d98 255 Pfam PF01618 MotA/TolQ/ExbB proton channel family 100 214 2.0E-25 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 THIMO_RS01415 c6806cf5b3174e34f901e88ce2ea3d98 255 PANTHER PTHR30433 2 247 3.4E-109 T 23-04-2016 THIMO_RS01415 c6806cf5b3174e34f901e88ce2ea3d98 255 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 23-04-2016 IPR000540 Flagellar motor protein MotA, conserved site THIMO_RS01415 c6806cf5b3174e34f901e88ce2ea3d98 255 PANTHER PTHR30433:SF2 2 247 3.4E-109 T 23-04-2016 IPR022522 Flagellar motor stator, MotA THIMO_RS03030 1fde015fef55948309dcbdf03982c79e 194 PANTHER PTHR35011 21 194 1.1E-31 T 23-04-2016 THIMO_RS03030 1fde015fef55948309dcbdf03982c79e 194 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 173 9.1E-24 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component THIMO_RS03030 1fde015fef55948309dcbdf03982c79e 194 PANTHER PTHR35011:SF4 21 194 1.1E-31 T 23-04-2016 THIMO_RS07650 0b0f5166a12fb50d8283a1cca0f6082c 382 Gene3D G3DSA:2.40.50.100 204 235 6.4E-4 T 23-04-2016 THIMO_RS07650 0b0f5166a12fb50d8283a1cca0f6082c 382 Gene3D G3DSA:2.40.50.100 102 129 6.4E-4 T 23-04-2016 THIMO_RS07650 0b0f5166a12fb50d8283a1cca0f6082c 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 79 343 8.8E-30 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 THIMO_RS07650 0b0f5166a12fb50d8283a1cca0f6082c 382 SUPERFAMILY SSF111369 87 265 3.01E-10 T 23-04-2016 THIMO_RS07650 0b0f5166a12fb50d8283a1cca0f6082c 382 PANTHER PTHR30469 27 347 3.4E-26 T 23-04-2016 THIMO_RS07650 0b0f5166a12fb50d8283a1cca0f6082c 382 Pfam PF13437 HlyD family secretion protein 207 301 4.8E-11 T 23-04-2016 THIMO_RS03620 cb5d44d6771c7dbec1b260bc0f464e11 288 Pfam PF08340 Domain of unknown function (DUF1732) 204 288 1.2E-34 T 23-04-2016 IPR013551 Domain of unknown function DUF1732 THIMO_RS03620 cb5d44d6771c7dbec1b260bc0f464e11 288 Pfam PF03755 YicC-like family, N-terminal region 2 153 3.7E-39 T 23-04-2016 IPR013527 YicC-like, N-terminal THIMO_RS03620 cb5d44d6771c7dbec1b260bc0f464e11 288 PANTHER PTHR30636 1 288 3.3E-101 T 23-04-2016 THIMO_RS03620 cb5d44d6771c7dbec1b260bc0f464e11 288 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 288 9.6E-92 T 23-04-2016 IPR005229 Conserved hypothetical protein CHP00255 THIMO_RS18615 b4c37e2d5068bef5fd143af10d8abb0d 188 Gene3D G3DSA:3.60.110.10 89 181 2.7E-4 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS18615 b4c37e2d5068bef5fd143af10d8abb0d 188 SUPERFAMILY SSF56317 85 184 9.03E-11 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 THIMO_RS18615 b4c37e2d5068bef5fd143af10d8abb0d 188 PANTHER PTHR38686 1 187 2.1E-22 T 23-04-2016 THIMO_RS02310 a4a35003f92c59fe43a72dda5292384c 128 Gene3D G3DSA:3.10.180.10 1 125 2.3E-44 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase THIMO_RS02310 a4a35003f92c59fe43a72dda5292384c 128 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 125 2.3E-61 T 23-04-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 THIMO_RS02310 a4a35003f92c59fe43a72dda5292384c 128 SUPERFAMILY SSF54593 1 125 8.19E-36 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase THIMO_RS02310 a4a35003f92c59fe43a72dda5292384c 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 7.1E-24 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain THIMO_RS02310 a4a35003f92c59fe43a72dda5292384c 128 PANTHER PTHR10374 1 125 3.2E-56 T 23-04-2016 THIMO_RS10000 adeeee0617882847648231cf90e134b0 366 Gene3D G3DSA:3.20.20.70 7 361 6.6E-135 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS10000 adeeee0617882847648231cf90e134b0 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 341 1.2E-87 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 THIMO_RS10000 adeeee0617882847648231cf90e134b0 366 PANTHER PTHR22893:SF14 6 362 2.2E-177 T 23-04-2016 THIMO_RS10000 adeeee0617882847648231cf90e134b0 366 PANTHER PTHR22893 6 362 2.2E-177 T 23-04-2016 THIMO_RS10000 adeeee0617882847648231cf90e134b0 366 SUPERFAMILY SSF51395 6 362 2.81E-129 T 23-04-2016 THIMO_RS13010 0a630e704c34e2a9189c6d4b96ef8619 73 Pfam PF01402 Ribbon-helix-helix protein, copG family 5 40 1.6E-6 T 23-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 THIMO_RS01955 0724c4b2f5372a7cbc6531f24a58e3b5 66 SUPERFAMILY SSF55008 2 64 3.14E-17 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS01955 0724c4b2f5372a7cbc6531f24a58e3b5 66 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 36 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 THIMO_RS01955 0724c4b2f5372a7cbc6531f24a58e3b5 66 Pfam PF00403 Heavy-metal-associated domain 4 61 6.5E-16 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 THIMO_RS01955 0724c4b2f5372a7cbc6531f24a58e3b5 66 Gene3D G3DSA:3.30.70.100 1 63 7.0E-22 T 23-04-2016 THIMO_RS03980 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Pfam PF09360 Iron-binding zinc finger CDGSH type 165 209 9.7E-16 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 THIMO_RS03980 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Pfam PF09360 Iron-binding zinc finger CDGSH type 90 133 3.2E-15 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 THIMO_RS03980 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 SMART SM00704 165 214 1.7E-5 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 THIMO_RS03980 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 SMART SM00704 94 139 2.5E-6 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 THIMO_RS03980 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Pfam PF06902 Divergent 4Fe-4S mono-cluster 9 72 1.2E-21 T 23-04-2016 IPR010693 Divergent 4Fe-4S mono-cluster THIMO_RS03980 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Gene3D G3DSA:3.30.70.20 15 75 1.5E-4 T 23-04-2016 THIMO_RS15215 44cf3636fb95952f0de343610aebc501 98 Gene3D G3DSA:1.10.260.40 4 57 3.4E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS15215 44cf3636fb95952f0de343610aebc501 98 Pfam PF01381 Helix-turn-helix 7 42 1.0E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS15215 44cf3636fb95952f0de343610aebc501 98 SUPERFAMILY SSF47413 3 64 1.1E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 THIMO_RS15215 44cf3636fb95952f0de343610aebc501 98 SMART SM00530 6 63 6.3E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 THIMO_RS03235 2684d1c21d59ebe4f32c28ed3478b3dc 370 PANTHER PTHR38134 5 369 1.8E-14 T 23-04-2016 THIMO_RS03235 2684d1c21d59ebe4f32c28ed3478b3dc 370 Gene3D G3DSA:3.40.50.2000 214 345 7.3E-8 T 23-04-2016 THIMO_RS03235 2684d1c21d59ebe4f32c28ed3478b3dc 370 SUPERFAMILY SSF53756 16 348 2.92E-16 T 23-04-2016 THIMO_RS14740 007da7ebff063df46dac72177962d945 176 Pfam PF05258 Protein of unknown function (DUF721) 24 93 1.9E-12 T 23-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 THIMO_RS13970 a4bbe168e2ddc55a1b2e82e3f13e9395 146 PANTHER PTHR30047 6 108 5.7E-26 T 23-04-2016 THIMO_RS13970 a4bbe168e2ddc55a1b2e82e3f13e9395 146 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 6 108 9.0E-26 T 23-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 THIMO_RS13970 a4bbe168e2ddc55a1b2e82e3f13e9395 146 PANTHER PTHR30047:SF2 6 108 5.7E-26 T 23-04-2016 THIMO_RS17170 040270f2950ba834dff281fcadd84c3a 125 PANTHER PTHR11527 8 125 4.5E-26 T 23-04-2016 IPR031107 Small heat shock protein HSP20 THIMO_RS17170 040270f2950ba834dff281fcadd84c3a 125 PANTHER PTHR11527:SF118 8 125 4.5E-26 T 23-04-2016 THIMO_RS17170 040270f2950ba834dff281fcadd84c3a 125 Gene3D G3DSA:2.60.40.790 6 124 6.1E-31 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS17170 040270f2950ba834dff281fcadd84c3a 125 Pfam PF00011 Hsp20/alpha crystallin family 24 123 1.3E-19 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain THIMO_RS17170 040270f2950ba834dff281fcadd84c3a 125 SUPERFAMILY SSF49764 11 124 8.37E-30 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS00805 f04301c5f70ba161920d7851eae81cf7 133 TIGRFAM TIGR04256 GxxExxY: GxxExxY protein 15 130 5.2E-41 T 23-04-2016 IPR026350 GxxExxY protein THIMO_RS00805 f04301c5f70ba161920d7851eae81cf7 133 Pfam PF13366 PD-(D/E)XK nuclease superfamily 14 129 4.3E-39 T 23-04-2016 IPR026350 GxxExxY protein THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 PANTHER PTHR21090 1 357 9.1E-201 T 23-04-2016 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 SUPERFAMILY SSF56796 5 356 3.66E-115 T 23-04-2016 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 Pfam PF01761 3-dehydroquinate synthase 66 324 8.5E-109 T 23-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 Gene3D G3DSA:1.20.1090.10 172 356 2.7E-66 T 23-04-2016 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 16 349 5.3E-116 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 3 357 43.257 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 PIRSF PIRSF001455 4 358 5.1E-108 T 23-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 THIMO_RS00420 dc8721730c5c32b76abf52ff47e4be7b 361 Gene3D G3DSA:3.40.50.1970 4 171 2.8E-67 T 23-04-2016 THIMO_RS00625 9c5e0d2ccdb9a17a9a3c8663f144e487 209 Pfam PF04367 Protein of unknown function (DUF502) 72 172 1.2E-28 T 23-04-2016 IPR007462 Protein of unknown function DUF502 THIMO_RS00625 9c5e0d2ccdb9a17a9a3c8663f144e487 209 PANTHER PTHR31876:SF1 7 209 3.1E-44 T 23-04-2016 THIMO_RS00625 9c5e0d2ccdb9a17a9a3c8663f144e487 209 PANTHER PTHR31876 7 209 3.1E-44 T 23-04-2016 THIMO_RS10585 e27dec8d5fdc89ee962fd9a2d2266657 113 SUPERFAMILY SSF54913 8 111 2.92E-8 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 249 3.7E-80 T 23-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 PANTHER PTHR21091:SF9 1 158 7.4E-33 T 23-04-2016 THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 213 3.2E-29 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 Gene3D G3DSA:3.40.1010.10 2 118 3.3E-25 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 SUPERFAMILY SSF53790 1 244 1.01E-45 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 PANTHER PTHR21091 1 158 7.4E-33 T 23-04-2016 THIMO_RS16885 4101213376cf7b35e97b0ed700778ca7 254 Gene3D G3DSA:3.30.950.10 119 229 6.3E-12 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 THIMO_RS03215 20a293279735cfd9c359c0e3727b3473 338 Gene3D G3DSA:3.40.50.2300 14 104 6.4E-5 T 23-04-2016 THIMO_RS01505 dce56526b4fb141099cf7f9151fbbc0a 1337 Gene3D G3DSA:3.40.50.300 294 344 5.0E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01505 dce56526b4fb141099cf7f9151fbbc0a 1337 Gene3D G3DSA:3.40.50.300 597 664 5.0E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01505 dce56526b4fb141099cf7f9151fbbc0a 1337 SUPERFAMILY SSF52540 593 661 6.39E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01505 dce56526b4fb141099cf7f9151fbbc0a 1337 SUPERFAMILY SSF52540 288 430 6.39E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01505 dce56526b4fb141099cf7f9151fbbc0a 1337 SMART SM00382 297 767 0.0036 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS03035 aaec29798aa9a4516ec9e1859168e9be 108 Pfam PF11191 Protein of unknown function (DUF2782) 27 108 6.0E-28 T 23-04-2016 IPR021357 Protein of unknown function DUF2782 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 PANTHER PTHR30476:SF0 1 160 5.7E-80 T 23-04-2016 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 Gene3D G3DSA:3.30.70.990 9 93 5.8E-32 T 23-04-2016 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 3.3E-63 T 23-04-2016 IPR007551 Protein of unknown function DUF520 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 28.315 T 23-04-2016 IPR007551 Protein of unknown function DUF520 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 SUPERFAMILY SSF89963 2 84 8.11E-31 T 23-04-2016 IPR007551 Protein of unknown function DUF520 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 Gene3D G3DSA:3.30.70.860 94 160 2.0E-32 T 23-04-2016 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 SUPERFAMILY SSF89963 88 160 5.75E-28 T 23-04-2016 IPR007551 Protein of unknown function DUF520 THIMO_RS07085 25802f270e7efc2cb25d88742cfd4c54 160 PANTHER PTHR30476 1 160 5.7E-80 T 23-04-2016 THIMO_RS03800 12a3ca30f24c85fa0807c8040ad1fc0e 121 Pfam PF04965 Gene 25-like lysozyme 22 106 5.2E-14 T 23-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD THIMO_RS03800 12a3ca30f24c85fa0807c8040ad1fc0e 121 PANTHER PTHR35862 1 114 9.9E-21 T 23-04-2016 THIMO_RS03800 12a3ca30f24c85fa0807c8040ad1fc0e 121 PANTHER PTHR35862:SF2 1 114 9.9E-21 T 23-04-2016 THIMO_RS03800 12a3ca30f24c85fa0807c8040ad1fc0e 121 SUPERFAMILY SSF160719 18 114 4.71E-18 T 23-04-2016 THIMO_RS03800 12a3ca30f24c85fa0807c8040ad1fc0e 121 Gene3D G3DSA:3.10.450.40 2 115 1.6E-28 T 23-04-2016 THIMO_RS08075 b94aae95c439cd33e2520b276fca6139 164 SUPERFAMILY SSF52540 27 123 1.65E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS08075 b94aae95c439cd33e2520b276fca6139 164 PANTHER PTHR33540 1 153 1.6E-39 T 23-04-2016 THIMO_RS08075 b94aae95c439cd33e2520b276fca6139 164 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 14 138 6.4E-41 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 THIMO_RS08075 b94aae95c439cd33e2520b276fca6139 164 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 126 1.9E-36 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 THIMO_RS08075 b94aae95c439cd33e2520b276fca6139 164 Gene3D G3DSA:3.40.50.300 3 150 2.1E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07315 e9803b6393c4ab8eb853458b380ff7f3 161 SUPERFAMILY SSF53335 2 106 1.86E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS07315 e9803b6393c4ab8eb853458b380ff7f3 161 Gene3D G3DSA:3.40.50.150 2 134 1.5E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS07315 e9803b6393c4ab8eb853458b380ff7f3 161 Pfam PF10294 Lysine methyltransferase 12 105 5.6E-7 T 23-04-2016 IPR019410 Lysine methyltransferase THIMO_RS12215 d333af6f9ee9a04f9f25541bb4b4540c 361 PANTHER PTHR30040:SF2 12 345 1.0E-42 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 THIMO_RS12215 d333af6f9ee9a04f9f25541bb4b4540c 361 Pfam PF02424 ApbE family 51 313 9.2E-54 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 THIMO_RS12215 d333af6f9ee9a04f9f25541bb4b4540c 361 SUPERFAMILY SSF143631 34 338 3.14E-56 T 23-04-2016 IPR003374 ApbE-like domain THIMO_RS12215 d333af6f9ee9a04f9f25541bb4b4540c 361 PIRSF PIRSF006268 8 343 4.2E-55 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 THIMO_RS12215 d333af6f9ee9a04f9f25541bb4b4540c 361 PANTHER PTHR30040 12 345 1.0E-42 T 23-04-2016 THIMO_RS17045 c3544cd905c8be829b7c9856e4fc7601 281 SUPERFAMILY SSF52540 3 274 6.02E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17045 c3544cd905c8be829b7c9856e4fc7601 281 Gene3D G3DSA:3.40.50.300 2 263 3.6E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS17045 c3544cd905c8be829b7c9856e4fc7601 281 Pfam PF00685 Sulfotransferase domain 3 265 3.2E-18 T 23-04-2016 IPR000863 Sulfotransferase domain GO:0008146 THIMO_RS18095 1ce8413baea1d35e9aaa59019b80f8fe 294 Pfam PF07603 Protein of unknown function (DUF1566) 134 279 7.6E-30 T 23-04-2016 IPR011460 Protein of unknown function DUF1566 THIMO_RS00365 6e8cd3a0f6b3f86a791feae8b84453e0 361 SUPERFAMILY SSF53850 152 274 6.15E-6 T 23-04-2016 THIMO_RS00365 6e8cd3a0f6b3f86a791feae8b84453e0 361 PANTHER PTHR33376:SF5 1 345 2.9E-139 T 23-04-2016 THIMO_RS00365 6e8cd3a0f6b3f86a791feae8b84453e0 361 PANTHER PTHR33376 1 345 2.9E-139 T 23-04-2016 THIMO_RS00365 6e8cd3a0f6b3f86a791feae8b84453e0 361 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 325 5.3E-57 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 THIMO_RS00365 6e8cd3a0f6b3f86a791feae8b84453e0 361 PIRSF PIRSF039026 1 360 1.6E-135 T 23-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like THIMO_RS09525 9e7ec5d7855ffcb247787aef7f446bc0 120 Gene3D G3DSA:1.20.120.580 71 104 4.4E-4 T 23-04-2016 THIMO_RS09525 9e7ec5d7855ffcb247787aef7f446bc0 120 PANTHER PTHR34139 1 112 7.4E-32 T 23-04-2016 THIMO_RS09525 9e7ec5d7855ffcb247787aef7f446bc0 120 Pfam PF01934 Protein of unknown function DUF86 15 109 2.6E-22 T 23-04-2016 IPR008201 Protein of unknown function DUF86 THIMO_RS01315 7cafb4a468894eebd84324eda3f044cb 135 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 4 125 6.6E-15 T 23-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 THIMO_RS01315 7cafb4a468894eebd84324eda3f044cb 135 PANTHER PTHR38786 2 133 3.1E-14 T 23-04-2016 THIMO_RS01315 7cafb4a468894eebd84324eda3f044cb 135 Pfam PF02050 Flagellar FliJ protein 7 125 3.2E-19 T 23-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 THIMO_RS15415 83a0002ac73f883e6f1da8cd3543272a 64 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS15415 83a0002ac73f883e6f1da8cd3543272a 64 SUPERFAMILY SSF54862 5 58 1.05E-11 T 23-04-2016 THIMO_RS15415 83a0002ac73f883e6f1da8cd3543272a 64 Pfam PF00037 4Fe-4S binding domain 4 25 8.8E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS15415 83a0002ac73f883e6f1da8cd3543272a 64 Gene3D G3DSA:3.30.70.20 5 57 1.2E-11 T 23-04-2016 THIMO_RS12465 0180d4c32912ec69a73c460a202317dc 115 SUPERFAMILY SSF54913 2 101 2.0E-14 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS12465 0180d4c32912ec69a73c460a202317dc 115 Gene3D G3DSA:3.30.70.120 6 104 6.4E-8 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal THIMO_RS11440 7230031701dbd896421d1a1e5bfe0674 84 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 28.019 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 THIMO_RS11440 7230031701dbd896421d1a1e5bfe0674 84 PANTHER PTHR34772 1 80 1.1E-39 T 23-04-2016 THIMO_RS11440 7230031701dbd896421d1a1e5bfe0674 84 PANTHER PTHR34772:SF1 1 80 1.1E-39 T 23-04-2016 THIMO_RS11440 7230031701dbd896421d1a1e5bfe0674 84 SUPERFAMILY SSF50182 7 69 7.51E-25 T 23-04-2016 IPR010920 LSM domain THIMO_RS11440 7230031701dbd896421d1a1e5bfe0674 84 Gene3D G3DSA:2.30.30.100 1 74 3.7E-38 T 23-04-2016 THIMO_RS11440 7230031701dbd896421d1a1e5bfe0674 84 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 1.8E-30 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 THIMO_RS02790 d340fcc9bccbc6438e02d0e29a80445b 118 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 1 118 20.893 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 THIMO_RS02790 d340fcc9bccbc6438e02d0e29a80445b 118 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 117 4.9E-41 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 THIMO_RS02790 d340fcc9bccbc6438e02d0e29a80445b 118 PANTHER PTHR11058:SF10 1 118 3.8E-67 T 23-04-2016 THIMO_RS02790 d340fcc9bccbc6438e02d0e29a80445b 118 PANTHER PTHR11058 1 118 3.8E-67 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 THIMO_RS18535 9028040207f82d9d35dbff1e3c061dbc 217 Gene3D G3DSA:3.40.50.150 23 187 7.8E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS18535 9028040207f82d9d35dbff1e3c061dbc 217 Pfam PF13649 Methyltransferase domain 46 142 8.8E-7 T 23-04-2016 THIMO_RS18535 9028040207f82d9d35dbff1e3c061dbc 217 SUPERFAMILY SSF53335 8 179 9.62E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS05135 baa6e9d2d8f46f9b291d64bb4168db92 119 PANTHER PTHR21043 1 105 9.9E-43 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS THIMO_RS05135 baa6e9d2d8f46f9b291d64bb4168db92 119 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.837 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS THIMO_RS05135 baa6e9d2d8f46f9b291d64bb4168db92 119 SUPERFAMILY SSF81301 1 110 1.28E-38 T 23-04-2016 THIMO_RS05135 baa6e9d2d8f46f9b291d64bb4168db92 119 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 7.2E-27 T 23-04-2016 THIMO_RS05135 baa6e9d2d8f46f9b291d64bb4168db92 119 Gene3D G3DSA:3.30.460.10 3 105 5.5E-38 T 23-04-2016 THIMO_RS05135 baa6e9d2d8f46f9b291d64bb4168db92 119 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 1.4E-36 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS THIMO_RS09915 9114e6411e9ba3c6874aba4b04940506 270 Gene3D G3DSA:1.10.3720.10 58 263 1.9E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09915 9114e6411e9ba3c6874aba4b04940506 270 PANTHER PTHR30465:SF2 11 268 3.1E-94 T 23-04-2016 THIMO_RS09915 9114e6411e9ba3c6874aba4b04940506 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 263 2.0E-30 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS09915 9114e6411e9ba3c6874aba4b04940506 270 PANTHER PTHR30465 11 268 3.1E-94 T 23-04-2016 THIMO_RS09915 9114e6411e9ba3c6874aba4b04940506 270 SUPERFAMILY SSF161098 62 248 2.49E-23 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 THIMO_RS07560 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 Gene3D G3DSA:1.20.950.20 87 171 3.1E-5 T 23-04-2016 THIMO_RS07560 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 PANTHER PTHR30529:SF5 1 183 5.4E-83 T 23-04-2016 THIMO_RS07560 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 PANTHER PTHR30529 1 183 5.4E-83 T 23-04-2016 THIMO_RS07560 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 Pfam PF01292 Prokaryotic cytochrome b561 8 179 1.6E-30 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 THIMO_RS07560 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 SUPERFAMILY SSF81342 4 180 2.2E-38 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 THIMO_RS13335 55668e176ed9418de1e9d23f1d158ed5 136 PANTHER PTHR30558 15 136 1.0E-16 T 23-04-2016 THIMO_RS13335 55668e176ed9418de1e9d23f1d158ed5 136 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 121 1.6E-16 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS04480 35887c973950e40e2a2cea99de4df6c2 149 Pfam PF00106 short chain dehydrogenase 6 142 9.0E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS04480 35887c973950e40e2a2cea99de4df6c2 149 PANTHER PTHR24322 114 137 4.0E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS04480 35887c973950e40e2a2cea99de4df6c2 149 PANTHER PTHR24322 15 89 4.0E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR THIMO_RS04480 35887c973950e40e2a2cea99de4df6c2 149 Gene3D G3DSA:3.40.50.720 3 139 1.5E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS04480 35887c973950e40e2a2cea99de4df6c2 149 SUPERFAMILY SSF51735 4 142 3.04E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS09280 1eaaf16888dc1f8943cfb2b17d6770cd 107 Pfam PF13591 MerR HTH family regulatory protein 20 103 5.0E-19 T 23-04-2016 THIMO_RS15970 0601cd6297569e457bb00b90636596b9 129 PANTHER PTHR10849 19 97 8.7E-14 T 23-04-2016 THIMO_RS15970 0601cd6297569e457bb00b90636596b9 129 SUPERFAMILY SSF54862 25 111 7.85E-17 T 23-04-2016 THIMO_RS15970 0601cd6297569e457bb00b90636596b9 129 Gene3D G3DSA:3.30.70.20 26 99 3.2E-15 T 23-04-2016 THIMO_RS15970 0601cd6297569e457bb00b90636596b9 129 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 47 58 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site THIMO_RS15970 0601cd6297569e457bb00b90636596b9 129 Pfam PF13187 4Fe-4S dicluster domain 46 93 1.0E-8 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain THIMO_RS14435 e467ae32e2a598b69510a186e0e27e95 86 Gene3D G3DSA:1.10.10.10 4 69 6.3E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS14435 e467ae32e2a598b69510a186e0e27e95 86 Pfam PF01726 LexA DNA binding domain 4 64 2.8E-6 T 23-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 THIMO_RS14435 e467ae32e2a598b69510a186e0e27e95 86 SUPERFAMILY SSF46785 5 69 2.26E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain THIMO_RS06580 87a41db5a6d20fe74b1b0c9e68f75ecf 110 SUPERFAMILY SSF55248 16 110 6.67E-32 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS06580 87a41db5a6d20fe74b1b0c9e68f75ecf 110 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 19 109 2.3E-29 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS06580 87a41db5a6d20fe74b1b0c9e68f75ecf 110 PANTHER PTHR12599 6 110 2.2E-33 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS06580 87a41db5a6d20fe74b1b0c9e68f75ecf 110 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 110 20.152 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS06580 87a41db5a6d20fe74b1b0c9e68f75ecf 110 Gene3D G3DSA:3.30.1360.20 12 110 2.8E-31 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 THIMO_RS03590 30ef97a579c4c0346950d96a98d5a932 194 Pfam PF02325 YGGT family 110 179 6.3E-18 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 THIMO_RS03590 30ef97a579c4c0346950d96a98d5a932 194 Pfam PF02325 YGGT family 16 79 5.7E-20 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 THIMO_RS03590 30ef97a579c4c0346950d96a98d5a932 194 PANTHER PTHR33219:SF5 1 193 6.6E-61 T 23-04-2016 THIMO_RS03590 30ef97a579c4c0346950d96a98d5a932 194 PANTHER PTHR33219 1 193 6.6E-61 T 23-04-2016 THIMO_RS14635 299e15329813fc06504f46df6b95bd3d 381 Gene3D G3DSA:2.40.160.40 100 209 2.0E-4 T 23-04-2016 THIMO_RS14635 299e15329813fc06504f46df6b95bd3d 381 SUPERFAMILY SSF56935 102 115 8.7E-8 T 23-04-2016 THIMO_RS14635 299e15329813fc06504f46df6b95bd3d 381 SUPERFAMILY SSF56935 168 359 8.7E-8 T 23-04-2016 THIMO_RS14635 299e15329813fc06504f46df6b95bd3d 381 Pfam PF13505 Outer membrane protein beta-barrel domain 187 378 2.0E-8 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel THIMO_RS14635 299e15329813fc06504f46df6b95bd3d 381 Gene3D G3DSA:2.40.160.20 287 376 1.8E-4 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 THIMO_RS14635 299e15329813fc06504f46df6b95bd3d 381 Gene3D G3DSA:2.40.160.20 210 251 1.8E-4 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 THIMO_RS12770 4fb3fe7bd6bd120ecc6e3046b12ab1ea 361 PANTHER PTHR22926 1 357 1.8E-69 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS12770 4fb3fe7bd6bd120ecc6e3046b12ab1ea 361 PANTHER PTHR22926:SF3 1 357 1.8E-69 T 23-04-2016 THIMO_RS12770 4fb3fe7bd6bd120ecc6e3046b12ab1ea 361 Pfam PF00953 Glycosyl transferase family 4 75 232 8.8E-36 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS11330 1f725ecfb9505a39b8c4c3c5d1b01b78 275 PANTHER PTHR10108 87 235 3.4E-21 T 23-04-2016 THIMO_RS11330 1f725ecfb9505a39b8c4c3c5d1b01b78 275 PANTHER PTHR10108:SF836 87 235 3.4E-21 T 23-04-2016 THIMO_RS11330 1f725ecfb9505a39b8c4c3c5d1b01b78 275 Gene3D G3DSA:3.40.50.150 87 202 1.7E-15 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11330 1f725ecfb9505a39b8c4c3c5d1b01b78 275 SUPERFAMILY SSF53335 83 196 2.0E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11330 1f725ecfb9505a39b8c4c3c5d1b01b78 275 Pfam PF08241 Methyltransferase domain 87 135 2.3E-8 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 THIMO_RS04160 e88877bd5ba4fd2bfadc18f89866c6e6 154 SUPERFAMILY SSF55961 5 144 5.11E-16 T 23-04-2016 THIMO_RS04160 e88877bd5ba4fd2bfadc18f89866c6e6 154 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 142 3.8E-15 T 23-04-2016 IPR019587 Polyketide cyclase/dehydrase THIMO_RS04160 e88877bd5ba4fd2bfadc18f89866c6e6 154 Gene3D G3DSA:3.30.530.20 5 147 2.8E-11 T 23-04-2016 IPR023393 START-like domain THIMO_RS09565 9c291e1a0f326466c84f48632bd0eed8 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.4E-27 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 THIMO_RS09565 9c291e1a0f326466c84f48632bd0eed8 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 88 17.877 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 THIMO_RS09565 9c291e1a0f326466c84f48632bd0eed8 89 Pfam PF03776 Septum formation topological specificity factor MinE 15 82 2.9E-24 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 THIMO_RS09565 9c291e1a0f326466c84f48632bd0eed8 89 PANTHER PTHR33404 3 88 8.1E-23 T 23-04-2016 THIMO_RS09565 9c291e1a0f326466c84f48632bd0eed8 89 SUPERFAMILY SSF55229 34 83 3.4E-13 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 THIMO_RS09565 9c291e1a0f326466c84f48632bd0eed8 89 Gene3D G3DSA:3.30.1070.10 34 83 1.1E-17 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 THIMO_RS14500 afa7cc8a830566882d967bbd4ac61d6b 109 SMART SM00834 1 42 5.9E-21 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain THIMO_RS14500 afa7cc8a830566882d967bbd4ac61d6b 109 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 2.4E-22 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain THIMO_RS14500 afa7cc8a830566882d967bbd4ac61d6b 109 PANTHER PTHR34404 2 66 3.6E-20 T 23-04-2016 THIMO_RS14500 afa7cc8a830566882d967bbd4ac61d6b 109 Pfam PF09723 Zinc ribbon domain 1 41 1.0E-17 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain THIMO_RS14500 afa7cc8a830566882d967bbd4ac61d6b 109 PANTHER PTHR34404:SF2 2 66 3.6E-20 T 23-04-2016 THIMO_RS02300 993e6e0721450d81e6f4ba53f3b3f16f 68 Pfam PF07869 Protein of unknown function (DUF1656) 3 58 1.5E-21 T 23-04-2016 IPR012451 Protein of unknown function DUF1656 THIMO_RS04140 04ce18f46a6af0cc29c2fbce11b5faf0 66 Pfam PF10047 Protein of unknown function (DUF2281) 7 41 1.7E-7 T 23-04-2016 IPR018739 Domain of unknown function DUF2281 THIMO_RS05815 9cfd3f0bd0fb12815d64a01dde04e3e2 172 SUPERFAMILY SSF54534 8 145 2.95E-16 T 23-04-2016 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 1 467 59.602 T 23-04-2016 IPR020888 Ribulose bisphosphate carboxylase, large subunit GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 188 196 - T 23-04-2016 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 PANTHER PTHR23321 17 447 7.0E-294 T 23-04-2016 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 SUPERFAMILY SSF51649 142 468 3.66E-143 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 16 136 6.9E-44 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 146 454 6.0E-131 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 PANTHER PTHR23321:SF31 17 447 7.0E-294 T 23-04-2016 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 Gene3D G3DSA:3.30.70.150 15 139 1.7E-62 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 SUPERFAMILY SSF54966 3 140 6.94E-57 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS03675 ffbeab99a95ea3644abddb02e02e395c 472 Gene3D G3DSA:3.20.20.110 141 454 2.6E-175 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 THIMO_RS15545 c23eac5320b3c83cecf916c26c1d5b64 820 PANTHER PTHR30189 127 817 3.3E-72 T 23-04-2016 THIMO_RS15545 c23eac5320b3c83cecf916c26c1d5b64 820 Pfam PF04453 Organic solvent tolerance protein 370 738 1.0E-89 T 23-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 THIMO_RS15545 c23eac5320b3c83cecf916c26c1d5b64 820 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 34 801 19.816 T 23-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 THIMO_RS15545 c23eac5320b3c83cecf916c26c1d5b64 820 Gene3D G3DSA:2.60.450.10 123 270 1.6E-14 T 23-04-2016 THIMO_RS07100 f102ea8908f170ea40d82075b029d458 125 PANTHER PTHR36558:SF1 1 121 1.2E-35 T 23-04-2016 THIMO_RS07100 f102ea8908f170ea40d82075b029d458 125 SUPERFAMILY SSF52980 10 98 1.13E-13 T 23-04-2016 IPR011335 Restriction endonuclease type II-like THIMO_RS07100 f102ea8908f170ea40d82075b029d458 125 Pfam PF05685 Putative restriction endonuclease 2 100 1.6E-18 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS07100 f102ea8908f170ea40d82075b029d458 125 PANTHER PTHR36558 1 121 1.2E-35 T 23-04-2016 THIMO_RS07100 f102ea8908f170ea40d82075b029d458 125 Gene3D G3DSA:3.90.1570.10 4 94 7.2E-12 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS05975 c361581a21c524e0660592a03e3eeec6 158 Hamap MF_00598 Protein Smg [smg]. 5 158 28.215 T 23-04-2016 IPR007456 Smg THIMO_RS05975 c361581a21c524e0660592a03e3eeec6 158 PANTHER PTHR38692:SF1 2 158 1.1E-55 T 23-04-2016 THIMO_RS05975 c361581a21c524e0660592a03e3eeec6 158 Pfam PF04361 Protein of unknown function (DUF494) 5 158 3.6E-54 T 23-04-2016 IPR007456 Smg THIMO_RS05975 c361581a21c524e0660592a03e3eeec6 158 PANTHER PTHR38692 2 158 1.1E-55 T 23-04-2016 THIMO_RS11755 a70c7774d0dc71debc083fe2b25d3572 250 Pfam PF13490 Putative zinc-finger 6 41 4.1E-8 T 23-04-2016 IPR027383 Putative zinc-finger THIMO_RS03175 e2cc8abd93a08777240492ffa8f21600 396 Pfam PF09375 Imelysin 53 343 1.9E-41 T 23-04-2016 THIMO_RS10485 caeb305e084aaab9eaf349498f6c408d 275 PANTHER PTHR37423 1 253 3.7E-82 T 23-04-2016 THIMO_RS10485 caeb305e084aaab9eaf349498f6c408d 275 SUPERFAMILY SSF48452 28 119 5.38E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS10485 caeb305e084aaab9eaf349498f6c408d 275 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 2 246 43.342 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD THIMO_RS10485 caeb305e084aaab9eaf349498f6c408d 275 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 244 1.3E-86 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD THIMO_RS10485 caeb305e084aaab9eaf349498f6c408d 275 Pfam PF13525 Outer membrane lipoprotein 33 239 5.1E-68 T 23-04-2016 THIMO_RS10485 caeb305e084aaab9eaf349498f6c408d 275 Gene3D G3DSA:1.25.40.10 35 206 5.7E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS13340 206988a629c0eeb3e4182e08bdf21c6e 139 PANTHER PTHR30558 17 139 3.4E-20 T 23-04-2016 THIMO_RS13340 206988a629c0eeb3e4182e08bdf21c6e 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 130 1.1E-18 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS15260 272bf7c7b5ec73d3e5a82ab0588b47d3 96 SUPERFAMILY SSF81301 3 96 2.62E-23 T 23-04-2016 THIMO_RS15260 272bf7c7b5ec73d3e5a82ab0588b47d3 96 Gene3D G3DSA:3.30.460.10 3 95 2.6E-26 T 23-04-2016 THIMO_RS15260 272bf7c7b5ec73d3e5a82ab0588b47d3 96 Pfam PF01909 Nucleotidyltransferase domain 13 88 1.2E-14 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 THIMO_RS15260 272bf7c7b5ec73d3e5a82ab0588b47d3 96 PANTHER PTHR33571 3 96 3.2E-29 T 23-04-2016 THIMO_RS00535 2565e29c2a95acf0bd2787358bf2a643 142 Pfam PF00581 Rhodanese-like domain 10 117 3.2E-12 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00535 2565e29c2a95acf0bd2787358bf2a643 142 Gene3D G3DSA:3.40.250.10 8 141 6.4E-33 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00535 2565e29c2a95acf0bd2787358bf2a643 142 SMART SM00450 10 125 2.6E-14 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS00535 2565e29c2a95acf0bd2787358bf2a643 142 SUPERFAMILY SSF52821 5 141 6.02E-21 T 23-04-2016 IPR001763 Rhodanese-like domain THIMO_RS03830 a526c527bc37288b758c259b12dc203c 69 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 14 57 1.2E-9 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system THIMO_RS15930 bc93980283d1a49c5131e2e81dbefad8 103 Pfam PF09413 Putative prokaryotic signal transducing protein 1 67 5.2E-12 T 23-04-2016 IPR018551 Domain of unknown function DUF2007 THIMO_RS12535 711ac8faad66d5093569d997831bbe7b 189 PANTHER PTHR35004:SF2 30 153 3.2E-22 T 23-04-2016 THIMO_RS12535 711ac8faad66d5093569d997831bbe7b 189 PANTHER PTHR35004 30 153 3.2E-22 T 23-04-2016 THIMO_RS00075 f173a20edc6fdbb0c945daa3e730cd15 344 PANTHER PTHR10859 1 338 3.6E-85 T 23-04-2016 THIMO_RS00075 f173a20edc6fdbb0c945daa3e730cd15 344 Gene3D G3DSA:3.90.550.10 5 120 1.5E-17 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS00075 f173a20edc6fdbb0c945daa3e730cd15 344 SUPERFAMILY SSF53448 3 256 1.94E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS00075 f173a20edc6fdbb0c945daa3e730cd15 344 Pfam PF00535 Glycosyl transferase family 2 6 165 2.1E-24 T 23-04-2016 IPR001173 Glycosyltransferase 2-like THIMO_RS00075 f173a20edc6fdbb0c945daa3e730cd15 344 PANTHER PTHR10859:SF94 1 338 3.6E-85 T 23-04-2016 THIMO_RS12960 8b236975c069e306090afd5e723a49d4 145 TIGRFAM TIGR04062 dnd_assoc_4: dnd system-associated protein 4 2 140 1.1E-25 T 23-04-2016 IPR023983 DNA sulphur modification system-associated protein 4 THIMO_RS00950 caa9e280d82e1f737c2835ac8b8b8786 160 Gene3D G3DSA:3.30.530.20 5 143 4.6E-12 T 23-04-2016 IPR023393 START-like domain THIMO_RS00950 caa9e280d82e1f737c2835ac8b8b8786 160 SUPERFAMILY SSF55961 1 144 6.77E-22 T 23-04-2016 THIMO_RS00950 caa9e280d82e1f737c2835ac8b8b8786 160 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 138 1.1E-17 T 23-04-2016 IPR019587 Polyketide cyclase/dehydrase THIMO_RS09720 ee7f6368eea766ecae4954a7fba94a2d 102 PANTHER PTHR30298 19 97 1.2E-15 T 23-04-2016 THIMO_RS09720 ee7f6368eea766ecae4954a7fba94a2d 102 Pfam PF13808 DDE_Tnp_1-associated 19 97 3.2E-25 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305 227 290 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305 311 346 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305 994 1244 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305 368 524 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305 546 833 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1164 1244 3.3E-20 T 23-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 699 733 6.6E-9 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 246 282 2.3E-10 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 741 776 2.6E-7 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 783 818 1.3E-5 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 484 520 2.2E-9 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 874 909 5.4E-9 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 364 390 4.3E-7 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 678 715 3.6E-10 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 568 603 5.6E-7 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 610 645 8.3E-6 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 228 260 4.3E-7 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 470 500 9.3E-7 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 442 477 2.4E-12 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF05593 RHS Repeat 526 562 2.3E-10 T 23-04-2016 IPR031325 RHS repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 874 911 9.6E-7 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 741 770 3.9E-5 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 631 666 1.3E-4 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 505 543 3.1E-10 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 678 717 2.5E-10 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 227 266 1.0E-8 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 783 813 2.1E-4 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 589 624 0.0014 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 363 394 2.7E-7 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 436 462 1.1E-5 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 547 588 1.2E-5 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 246 285 5.9E-8 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 463 503 7.5E-10 T 23-04-2016 IPR006530 YD repeat THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 SUPERFAMILY SSF69304 415 547 5.23E-9 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 SUPERFAMILY SSF69304 580 713 5.23E-9 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305:SF6 227 290 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305:SF6 311 346 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305:SF6 994 1244 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305:SF6 368 524 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 PANTHER PTHR32305:SF6 546 833 5.5E-71 T 23-04-2016 THIMO_RS08370 a232ab6a1d040e661078c52c7164f072 1381 Pfam PF03527 RHS protein 1136 1171 2.8E-7 T 23-04-2016 IPR001826 RHS protein THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 Gene3D G3DSA:3.30.70.1400 42 126 2.4E-30 T 23-04-2016 THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 PANTHER PTHR22602:SF0 15 323 7.0E-54 T 23-04-2016 THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 PANTHER PTHR22602 15 323 7.0E-54 T 23-04-2016 THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 227 5.4E-14 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 PIRSF PIRSF006487 28 341 3.9E-19 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 203 267 2.2E-27 T 23-04-2016 IPR017703 YgfZ/GcvT conserved site THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 SUPERFAMILY SSF103025 31 258 7.53E-62 T 23-04-2016 THIMO_RS09350 861faefde2e710749ec91fbb5506e169 343 SUPERFAMILY SSF101790 260 339 7.85E-9 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain THIMO_RS00855 93496913161179c910560dce7bb6367e 145 Pfam PF04186 FxsA cytoplasmic membrane protein 6 108 2.6E-34 T 23-04-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 THIMO_RS00855 93496913161179c910560dce7bb6367e 145 PANTHER PTHR35335:SF1 2 110 4.0E-29 T 23-04-2016 THIMO_RS00855 93496913161179c910560dce7bb6367e 145 PANTHER PTHR35335 2 110 4.0E-29 T 23-04-2016 THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 187 8.4E-49 T 23-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 Pfam PF00692 dUTPase 73 184 2.2E-7 T 23-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 SUPERFAMILY SSF51283 3 187 2.36E-51 T 23-04-2016 IPR029054 dUTPase-like THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 PANTHER PTHR11241:SF1 1 187 1.6E-76 T 23-04-2016 THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 PANTHER PTHR11241 1 187 1.6E-76 T 23-04-2016 THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 188 28.48 T 23-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 THIMO_RS12565 77bf8661ca4c4a6a1008e2e9880b902d 188 Gene3D G3DSA:2.70.40.10 3 187 1.4E-66 T 23-04-2016 IPR029054 dUTPase-like THIMO_RS03005 3cbd4905be5b1b7e6d32e5540c950655 206 SUPERFAMILY SSF53955 46 193 2.19E-22 T 23-04-2016 IPR023346 Lysozyme-like domain THIMO_RS03005 3cbd4905be5b1b7e6d32e5540c950655 206 Gene3D G3DSA:1.10.530.10 64 173 6.3E-8 T 23-04-2016 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 42.255 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 Gene3D G3DSA:3.40.50.700 21 149 2.1E-32 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 145 6.2E-22 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 PANTHER PTHR11995 11 156 5.1E-124 T 23-04-2016 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 152 1.3E-77 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 SUPERFAMILY SSF56770 9 153 4.06E-67 T 23-04-2016 THIMO_RS02795 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 PANTHER PTHR11995:SF19 11 156 5.1E-124 T 23-04-2016 THIMO_RS10100 94942a47f2d40a53d5ec94a6a6418b68 267 Pfam PF07819 PGAP1-like protein 93 164 5.1E-6 T 23-04-2016 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 THIMO_RS10100 94942a47f2d40a53d5ec94a6a6418b68 267 SUPERFAMILY SSF53474 45 229 2.37E-19 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS10100 94942a47f2d40a53d5ec94a6a6418b68 267 Gene3D G3DSA:3.40.50.1820 25 245 4.3E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS01305 eef256fd31fb899b822fb2918236c841 216 Pfam PF02108 Flagellar assembly protein FliH 59 186 1.4E-31 T 23-04-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE THIMO_RS01305 eef256fd31fb899b822fb2918236c841 216 SUPERFAMILY SSF160527 102 187 2.48E-5 T 23-04-2016 THIMO_RS01305 eef256fd31fb899b822fb2918236c841 216 PANTHER PTHR34982:SF1 27 206 4.7E-37 T 23-04-2016 THIMO_RS01305 eef256fd31fb899b822fb2918236c841 216 PANTHER PTHR34982 27 206 4.7E-37 T 23-04-2016 THIMO_RS16450 70ecc1c82493eb5b8219ad17ae5621c2 174 Pfam PF14367 Domain of unknown function (DUF4411) 7 168 1.3E-40 T 23-04-2016 IPR016541 Uncharacterised conserved protein UCP008505 THIMO_RS16075 c90856dbe4600243a3fe098608269857 146 PANTHER PTHR30558:SF5 1 145 4.2E-32 T 23-04-2016 THIMO_RS16075 c90856dbe4600243a3fe098608269857 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 135 2.1E-27 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS16075 c90856dbe4600243a3fe098608269857 146 PANTHER PTHR30558 1 145 4.2E-32 T 23-04-2016 THIMO_RS07145 f1a48fb88594a29b2a2d7237bfa7be52 646 PANTHER PTHR11629 331 388 8.3E-12 T 23-04-2016 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 THIMO_RS07145 f1a48fb88594a29b2a2d7237bfa7be52 646 Pfam PF01496 V-type ATPase 116kDa subunit family 284 386 2.7E-15 T 23-04-2016 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 THIMO_RS07145 f1a48fb88594a29b2a2d7237bfa7be52 646 Pfam PF01496 V-type ATPase 116kDa subunit family 525 623 2.2E-11 T 23-04-2016 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 PANTHER PTHR11615 3 485 2.0E-159 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 PANTHER PTHR11615 502 708 2.0E-159 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:3.40.228.10 147 324 1.4E-47 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:3.40.50.740 61 136 3.9E-47 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:3.40.50.740 325 495 3.9E-47 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:2.40.40.20 576 710 8.3E-29 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Pfam PF00384 Molybdopterin oxidoreductase 59 479 8.9E-31 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 PANTHER PTHR11615:SF125 3 485 2.0E-159 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 PANTHER PTHR11615:SF125 502 708 2.0E-159 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 SMART SM00926 2 56 2.0E-17 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 SUPERFAMILY SSF50692 580 710 4.75E-33 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:2.20.25.90 3 60 2.9E-19 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 SUPERFAMILY SSF53706 3 476 3.27E-124 T 23-04-2016 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Pfam PF01568 Molydopterin dinucleotide binding domain 585 698 8.5E-24 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 THIMO_RS10810 6754e20e4c3b629b4755ac404e52e3f3 725 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 3 52 2.9E-13 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 THIMO_RS10820 19a7b8fc2655c658844da6ef9c3973c1 210 Pfam PF01813 ATP synthase subunit D 15 203 4.8E-23 T 23-04-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 THIMO_RS06415 b2ae6cbb177278797d4f47e09dc38c54 71 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 17 60 9.1E-6 T 23-04-2016 IPR008621 Cbb3-type cytochrome oxidase component THIMO_RS16530 e2f8cc66612b7bd1e6577f7cb11bc6c6 119 Pfam PF09722 Protein of unknown function (DUF2384) 69 117 2.0E-11 T 23-04-2016 IPR024467 Domain of unknown function DUF2384 THIMO_RS01510 d3ac8c87b01af1e4fdffe4373bb68f19 620 Pfam PF13289 SIR2-like domain 175 313 2.5E-6 T 23-04-2016 THIMO_RS16285 37ab0c137ba3f1c3b1af85dc1b40e583 576 SUPERFAMILY SSF52151 320 417 9.68E-17 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS16285 37ab0c137ba3f1c3b1af85dc1b40e583 576 SUPERFAMILY SSF52151 34 210 9.68E-17 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS16285 37ab0c137ba3f1c3b1af85dc1b40e583 576 SUPERFAMILY SSF52151 254 281 9.68E-17 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 THIMO_RS16285 37ab0c137ba3f1c3b1af85dc1b40e583 576 Pfam PF01734 Patatin-like phospholipase 35 97 2.7E-6 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 PANTHER PTHR11749:SF7 3 230 7.3E-129 T 23-04-2016 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 PANTHER PTHR11749 3 230 7.3E-129 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 PIRSF PIRSF001461 1 228 4.7E-98 T 23-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 208 3.9E-93 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.4E-89 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 SUPERFAMILY SSF51366 5 207 2.41E-70 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 THIMO_RS17350 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 Gene3D G3DSA:3.20.20.70 5 208 2.2E-89 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 THIMO_RS08720 c81d708db3bfb6e073c0d182aae86663 314 PIRSF PIRSF005427 1 312 2.6E-79 T 23-04-2016 IPR005588 MucB/RseB THIMO_RS08720 c81d708db3bfb6e073c0d182aae86663 314 PANTHER PTHR38782:SF1 3 311 7.2E-52 T 23-04-2016 THIMO_RS08720 c81d708db3bfb6e073c0d182aae86663 314 Pfam PF03888 MucB/RseB N-terminal domain 25 195 4.6E-53 T 23-04-2016 IPR033434 MucB/RseB, N-terminal THIMO_RS08720 c81d708db3bfb6e073c0d182aae86663 314 Gene3D G3DSA:2.50.20.10 123 190 3.1E-4 T 23-04-2016 THIMO_RS08720 c81d708db3bfb6e073c0d182aae86663 314 PANTHER PTHR38782 3 311 7.2E-52 T 23-04-2016 THIMO_RS08720 c81d708db3bfb6e073c0d182aae86663 314 Pfam PF17188 MucB/RseB C-terminal domain 215 305 1.4E-23 T 23-04-2016 IPR033436 MucB/RseB, C-terminal THIMO_RS10850 33f2904ba748e3fbd58edc1ad5f5acc8 613 Pfam PF01496 V-type ATPase 116kDa subunit family 307 371 2.7E-7 T 23-04-2016 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 THIMO_RS04100 d3724b2f812e2e508e50092f8b54f2fd 538 Pfam PF08019 Domain of unknown function (DUF1705) 49 196 1.8E-48 T 23-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 THIMO_RS04100 d3724b2f812e2e508e50092f8b54f2fd 538 PANTHER PTHR30443:SF0 5 534 6.2E-199 T 23-04-2016 THIMO_RS04100 d3724b2f812e2e508e50092f8b54f2fd 538 PANTHER PTHR30443 5 534 6.2E-199 T 23-04-2016 THIMO_RS04100 d3724b2f812e2e508e50092f8b54f2fd 538 SUPERFAMILY SSF53649 230 517 1.23E-18 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 THIMO_RS04100 d3724b2f812e2e508e50092f8b54f2fd 538 Gene3D G3DSA:3.40.720.10 230 516 8.4E-14 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 THIMO_RS04100 d3724b2f812e2e508e50092f8b54f2fd 538 Pfam PF00884 Sulfatase 230 514 3.9E-49 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 THIMO_RS05980 3f32278d66c320952f5fd16a7cacd834 180 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 1.9E-10 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 THIMO_RS05980 3f32278d66c320952f5fd16a7cacd834 180 SMART SM00357 4 68 6.1E-4 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 THIMO_RS05980 3f32278d66c320952f5fd16a7cacd834 180 Pfam PF05901 Excalibur calcium-binding domain 142 174 4.9E-11 T 23-04-2016 IPR008613 Excalibur calcium-binding domain THIMO_RS05980 3f32278d66c320952f5fd16a7cacd834 180 SUPERFAMILY SSF50249 1 71 1.27E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS05980 3f32278d66c320952f5fd16a7cacd834 180 Gene3D G3DSA:2.40.50.140 2 71 1.5E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold THIMO_RS12835 893f75c2b80a7c1d24b6423b339d605b 291 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 38 259 1.5E-44 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system THIMO_RS00530 f7008a91192c7eba5c283725e2a5b3c6 340 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 36 307 4.2E-48 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 THIMO_RS00530 f7008a91192c7eba5c283725e2a5b3c6 340 PANTHER PTHR30606:SF5 36 332 6.0E-59 T 23-04-2016 THIMO_RS00530 f7008a91192c7eba5c283725e2a5b3c6 340 PIRSF PIRSF026649 19 316 6.5E-78 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 THIMO_RS00530 f7008a91192c7eba5c283725e2a5b3c6 340 PANTHER PTHR30606 36 332 6.0E-59 T 23-04-2016 THIMO_RS00570 047f56f8bf9e5adfea3308f6d1457fe7 658 SUPERFAMILY SSF53067 1 72 1.49E-7 T 23-04-2016 THIMO_RS00570 047f56f8bf9e5adfea3308f6d1457fe7 658 SUPERFAMILY SSF53067 246 311 1.49E-7 T 23-04-2016 THIMO_RS00570 047f56f8bf9e5adfea3308f6d1457fe7 658 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 4 170 6.1E-36 T 23-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal THIMO_RS00570 047f56f8bf9e5adfea3308f6d1457fe7 658 PANTHER PTHR11365 4 655 1.1E-187 T 23-04-2016 THIMO_RS00570 047f56f8bf9e5adfea3308f6d1457fe7 658 Pfam PF01968 Hydantoinase/oxoprolinase 192 468 9.7E-94 T 23-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 THIMO_RS09405 1b2988533264d4429c8a60374671e84b 956 Pfam PF03993 Domain of Unknown Function (DUF349) 682 754 2.6E-15 T 23-04-2016 IPR007139 Protein of unknown function DUF349 THIMO_RS09405 1b2988533264d4429c8a60374671e84b 956 Pfam PF03993 Domain of Unknown Function (DUF349) 616 671 2.3E-5 T 23-04-2016 IPR007139 Protein of unknown function DUF349 THIMO_RS09405 1b2988533264d4429c8a60374671e84b 956 Pfam PF03993 Domain of Unknown Function (DUF349) 532 606 2.5E-15 T 23-04-2016 IPR007139 Protein of unknown function DUF349 THIMO_RS11575 4ed50bfb983e1e30993b56b712c9213b 199 Gene3D G3DSA:1.20.1290.10 38 69 7.8E-4 T 23-04-2016 IPR029032 AhpD-like THIMO_RS07185 494c285f3cd05cf3b2039085c73a9304 148 Pfam PF01986 Domain of unknown function DUF123 37 127 1.9E-22 T 23-04-2016 IPR002837 Protein of unknown function DUF123 THIMO_RS07185 494c285f3cd05cf3b2039085c73a9304 148 PANTHER PTHR37460:SF1 12 131 9.8E-26 T 23-04-2016 THIMO_RS07185 494c285f3cd05cf3b2039085c73a9304 148 PANTHER PTHR37460 12 131 9.8E-26 T 23-04-2016 THIMO_RS18320 c7e6b22b6c8c89ab09d54f67418311bc 251 Pfam PF16537 Type II secretion system protein B 192 247 5.4E-14 T 23-04-2016 IPR032389 Type II secretion system protein B THIMO_RS18445 aba3eeb3dc3768230db7403d3663c393 156 Pfam PF12275 Protein of unknown function (DUF3616) 24 141 4.1E-36 T 23-04-2016 IPR022060 Protein of unknown function DUF3616 THIMO_RS18445 aba3eeb3dc3768230db7403d3663c393 156 SUPERFAMILY SSF63825 22 97 8.11E-5 T 23-04-2016 THIMO_RS15475 7c7918f7e0bca1c439c00bca3288351a 115 SUPERFAMILY SSF54292 19 114 3.61E-12 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS15475 7c7918f7e0bca1c439c00bca3288351a 115 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 106 7.4E-11 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 THIMO_RS15475 7c7918f7e0bca1c439c00bca3288351a 115 Gene3D G3DSA:3.10.20.30 3 114 1.2E-17 T 23-04-2016 IPR012675 Beta-grasp domain THIMO_RS08295 6df03e3b77ca2291a3b9e7f96670042c 130 Pfam PF07509 Protein of unknown function (DUF1523) 45 118 1.8E-18 T 23-04-2016 IPR011088 Bacteriophage phiNM3, A0EWY4 THIMO_RS00615 c4545f3565283cf40c67fdf2843e49f4 155 Pfam PF00011 Hsp20/alpha crystallin family 42 136 9.7E-20 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain THIMO_RS00615 c4545f3565283cf40c67fdf2843e49f4 155 PANTHER PTHR11527 1 144 5.1E-49 T 23-04-2016 IPR031107 Small heat shock protein HSP20 THIMO_RS00615 c4545f3565283cf40c67fdf2843e49f4 155 PANTHER PTHR11527:SF145 1 144 5.1E-49 T 23-04-2016 THIMO_RS00615 c4545f3565283cf40c67fdf2843e49f4 155 Gene3D G3DSA:2.60.40.790 6 136 4.1E-18 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS00615 c4545f3565283cf40c67fdf2843e49f4 155 SUPERFAMILY SSF49764 10 137 1.5E-22 T 23-04-2016 IPR008978 HSP20-like chaperone THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 Gene3D G3DSA:3.40.50.720 108 248 5.6E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 118 165 3.5E-9 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 SUPERFAMILY SSF53223 3 102 5.76E-32 T 23-04-2016 THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 Gene3D G3DSA:3.40.192.10 3 107 3.2E-36 T 23-04-2016 THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 273 33.012 T 23-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 SUPERFAMILY SSF51735 103 272 3.58E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 272 1.8E-79 T 23-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 PANTHER PTHR21089 4 273 1.1E-126 T 23-04-2016 THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 PANTHER PTHR21089:SF2 4 273 1.1E-126 T 23-04-2016 THIMO_RS00645 b37e961801d0f1cb7e1fe29ff4292fe4 276 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 1.2E-23 T 23-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 THIMO_RS03145 50298d10a4121317cca1ce8b75e5c7d6 365 Pfam PF09375 Imelysin 60 349 7.3E-39 T 23-04-2016 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PANTHER PTHR11349 1 142 1.1E-73 T 23-04-2016 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.3E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.3E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.3E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.3E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.3E-39 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 Gene3D G3DSA:3.30.70.141 1 136 6.1E-60 T 23-04-2016 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 Pfam PF00334 Nucleoside diphosphate kinase 4 135 4.9E-56 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 23-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 SMART SM00562 3 139 4.4E-85 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 140 35.284 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 THIMO_RS09060 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 SUPERFAMILY SSF54919 1 136 7.99E-59 T 23-04-2016 THIMO_RS09340 0b38c8e6eba70e0936afecfd78a87fb7 175 Pfam PF05951 Bacterial protein of unknown function (DUF882) 25 173 8.1E-55 T 23-04-2016 IPR010275 Protein of unknown function DUF882 THIMO_RS09340 0b38c8e6eba70e0936afecfd78a87fb7 175 PANTHER PTHR37425 3 173 2.1E-46 T 23-04-2016 THIMO_RS09340 0b38c8e6eba70e0936afecfd78a87fb7 175 SUPERFAMILY SSF55166 57 173 3.66E-31 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS09340 0b38c8e6eba70e0936afecfd78a87fb7 175 Gene3D G3DSA:3.30.1380.10 56 173 1.5E-27 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain THIMO_RS14265 04673d479127d569b6937856a6838952 74 Pfam PF00556 Antenna complex alpha/beta subunit 11 51 1.6E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14265 04673d479127d569b6937856a6838952 74 PRINTS PR00673 Light harvesting protein A chain signature 13 20 1.46E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14265 04673d479127d569b6937856a6838952 74 PRINTS PR00673 Light harvesting protein A chain signature 39 50 1.46E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14265 04673d479127d569b6937856a6838952 74 PRINTS PR00673 Light harvesting protein A chain signature 20 39 1.46E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit THIMO_RS14265 04673d479127d569b6937856a6838952 74 SUPERFAMILY SSF56918 11 54 3.66E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14265 04673d479127d569b6937856a6838952 74 Gene3D G3DSA:1.20.5.890 11 52 2.1E-15 T 23-04-2016 THIMO_RS04305 02b5d3250885bdf5be1860c21bf7ca33 232 SUPERFAMILY SSF81606 19 230 8.5E-15 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 THIMO_RS04305 02b5d3250885bdf5be1860c21bf7ca33 232 Pfam PF13672 Protein phosphatase 2C 11 209 9.2E-33 T 23-04-2016 THIMO_RS06560 90b5ac1c48f008f88609bcab4856cf57 530 PANTHER PTHR30462:SF0 8 333 6.5E-98 T 23-04-2016 THIMO_RS06560 90b5ac1c48f008f88609bcab4856cf57 530 PANTHER PTHR30462 8 333 6.5E-98 T 23-04-2016 THIMO_RS06560 90b5ac1c48f008f88609bcab4856cf57 530 Pfam PF02470 MlaD protein 298 398 4.2E-13 T 23-04-2016 IPR003399 Mce/MlaD THIMO_RS06560 90b5ac1c48f008f88609bcab4856cf57 530 Pfam PF02470 MlaD protein 171 229 8.0E-7 T 23-04-2016 IPR003399 Mce/MlaD THIMO_RS06560 90b5ac1c48f008f88609bcab4856cf57 530 Pfam PF02470 MlaD protein 54 144 1.3E-11 T 23-04-2016 IPR003399 Mce/MlaD THIMO_RS14235 b127ff8647c83148adbe81cd6b586f46 47 SUPERFAMILY SSF56918 4 47 1.57E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14235 b127ff8647c83148adbe81cd6b586f46 47 Gene3D G3DSA:1.20.5.250 8 47 9.3E-15 T 23-04-2016 THIMO_RS14235 b127ff8647c83148adbe81cd6b586f46 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14235 b127ff8647c83148adbe81cd6b586f46 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS14235 b127ff8647c83148adbe81cd6b586f46 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.5E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 THIMO_RS06115 157e646f94d97e0676f44e78c10a2329 550 TIGRFAM TIGR02165 cas5_6_GSU0054: CRISPR-associated protein GSU0054/csb2, Dpsyc system 1 542 1.4E-90 T 23-04-2016 IPR019089 CRISPR-associated protein, GSU0054 THIMO_RS06115 157e646f94d97e0676f44e78c10a2329 550 Pfam PF09609 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) 6 212 1.2E-8 T 23-04-2016 IPR019089 CRISPR-associated protein, GSU0054 THIMO_RS00545 f3347770a5c063d3cbad46f00dc42bf7 407 PANTHER PTHR21530 17 320 8.9E-65 T 23-04-2016 THIMO_RS00545 f3347770a5c063d3cbad46f00dc42bf7 407 PANTHER PTHR21530:SF0 17 320 8.9E-65 T 23-04-2016 THIMO_RS00545 f3347770a5c063d3cbad46f00dc42bf7 407 TIGRFAM TIGR00261 traB: TraB family protein 26 402 1.9E-83 T 23-04-2016 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal THIMO_RS00545 f3347770a5c063d3cbad46f00dc42bf7 407 Pfam PF01963 TraB family 23 245 3.3E-26 T 23-04-2016 IPR002816 Pheromone shutdown, TraB THIMO_RS15340 dc8a0c6c4d736d5ac0fef4255d7405e3 86 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 5 63 3.3E-11 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system THIMO_RS04800 965c95198c68160762b057fcfda327d9 275 SUPERFAMILY SSF53098 101 265 4.1E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS04800 965c95198c68160762b057fcfda327d9 275 Gene3D G3DSA:3.30.420.10 104 262 4.8E-35 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS04800 965c95198c68160762b057fcfda327d9 275 PANTHER PTHR32552 1 274 6.8E-70 T 23-04-2016 THIMO_RS04800 965c95198c68160762b057fcfda327d9 275 Pfam PF13276 HTH-like domain 31 84 1.5E-7 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS04800 965c95198c68160762b057fcfda327d9 275 Pfam PF00665 Integrase core domain 108 223 1.4E-28 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS12840 3cb218cf8bebdf85ebd4bc1a3faca868 205 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 30 102 3.1E-20 T 23-04-2016 IPR025159 Transcriptional regulator, AbiEi antitoxin THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 SMART SM00382 28 211 3.0E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 SUPERFAMILY SSF52540 5 333 3.55E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 Gene3D G3DSA:3.40.50.300 5 207 1.8E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 Gene3D G3DSA:1.10.8.80 254 341 9.5E-29 T 23-04-2016 THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 TIGRFAM TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I 5 341 1.7E-153 T 23-04-2016 IPR011775 Magnesium chelatase, ATPase subunit I GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00668 THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 PANTHER PTHR32039:SF10 3 342 2.6E-137 T 23-04-2016 THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 PANTHER PTHR32039 3 342 2.6E-137 T 23-04-2016 THIMO_RS14345 c5115881020542ba9ecb1002862fcde0 343 Pfam PF01078 Magnesium chelatase, subunit ChlI 118 188 1.3E-8 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain THIMO_RS04090 9ad1d720ab3b23739afa730a75ef6634 164 Pfam PF03729 Short repeat of unknown function (DUF308) 6 73 2.8E-5 T 23-04-2016 IPR005325 Protein of unknown function DUF308, membrane THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 Pfam PF00886 Ribosomal protein S16 8 68 1.0E-24 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 23-04-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 Gene3D G3DSA:3.30.1320.10 1 78 1.4E-32 T 23-04-2016 IPR023803 Ribosomal protein S16 domain THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 1.4E-31 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 SUPERFAMILY SSF54565 1 78 1.44E-29 T 23-04-2016 IPR023803 Ribosomal protein S16 domain THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 PANTHER PTHR12919 1 78 7.9E-38 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS10210 00edf383ea718bf02ce2a3cc10720735 90 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 25.051 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 THIMO_RS16395 57be7cf0b470497114a87c3ecb07f170 133 Pfam PF09722 Protein of unknown function (DUF2384) 80 132 9.3E-9 T 23-04-2016 IPR024467 Domain of unknown function DUF2384 THIMO_RS16395 57be7cf0b470497114a87c3ecb07f170 133 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 21 129 8.0E-33 T 23-04-2016 IPR020358 Uncharacterised protein family Y4oB THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 360 2.0E-135 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 24.539 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 3.1E-5 T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 Pfam PF00953 Glycosyl transferase family 4 99 283 1.1E-37 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 PANTHER PTHR22926:SF5 2 360 4.3E-168 T 23-04-2016 THIMO_RS14795 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 PANTHER PTHR22926 2 360 4.3E-168 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 THIMO_RS10145 6bb1bc1463fcb9ff5e1d398eec62dc12 247 TIGRFAM TIGR02206 intg_mem_TP0381: conserved hypothetical integral membrane protein TIGR02206 6 225 3.9E-52 T 23-04-2016 IPR011737 Conserved hypothetical protein CHP02206, TP0381 THIMO_RS10145 6bb1bc1463fcb9ff5e1d398eec62dc12 247 Pfam PF09529 Integral membrane protein (intg_mem_TP0381) 9 221 3.2E-49 T 23-04-2016 IPR011737 Conserved hypothetical protein CHP02206, TP0381 THIMO_RS17000 8c9b4cc23237143e6222a8d16b5cbc06 302 SUPERFAMILY SSF53795 108 175 2.84E-13 T 23-04-2016 THIMO_RS17000 8c9b4cc23237143e6222a8d16b5cbc06 302 Gene3D G3DSA:3.40.50.300 106 179 6.9E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS11270 b6e008237f31ec5e8db370881d77e284 228 SUPERFAMILY SSF143081 2 215 4.19E-78 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS11270 b6e008237f31ec5e8db370881d77e284 228 Pfam PF02586 SOS response associated peptidase (SRAP) 1 210 1.1E-69 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS11270 b6e008237f31ec5e8db370881d77e284 228 PANTHER PTHR13604 2 218 2.9E-82 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS11270 b6e008237f31ec5e8db370881d77e284 228 Gene3D G3DSA:3.90.1680.10 1 221 4.2E-76 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- THIMO_RS11550 bf9f2583b212157dcdf485aeac51e3b7 316 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 263 305 3.2E-11 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 THIMO_RS16335 ac1c91cd2a9d3001ff12d7bff8340056 645 Pfam PF02810 SEC-C motif 90 105 3.2E-4 T 23-04-2016 IPR004027 SEC-C motif THIMO_RS16335 ac1c91cd2a9d3001ff12d7bff8340056 645 Gene3D G3DSA:1.25.40.10 492 598 4.4E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16335 ac1c91cd2a9d3001ff12d7bff8340056 645 Gene3D G3DSA:1.25.40.10 160 267 4.4E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS16335 ac1c91cd2a9d3001ff12d7bff8340056 645 Gene3D G3DSA:1.25.40.10 417 448 4.4E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS14815 cd94e559475d57df37738076c8564b6f 97 Hamap MF_00910 Cell division protein FtsL [ftsL]. 6 89 14.77 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 THIMO_RS14815 cd94e559475d57df37738076c8564b6f 97 PANTHER PTHR37479 9 92 9.8E-19 T 23-04-2016 THIMO_RS14815 cd94e559475d57df37738076c8564b6f 97 PANTHER PTHR37479:SF1 9 92 9.8E-19 T 23-04-2016 THIMO_RS14815 cd94e559475d57df37738076c8564b6f 97 Pfam PF04999 Cell division protein FtsL 9 89 3.5E-21 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 THIMO_RS14815 cd94e559475d57df37738076c8564b6f 97 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 9 88 1.6E-19 T 23-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 THIMO_RS04680 fcf5ca02901ee37487e454777837147f 148 Pfam PF01943 Polysaccharide biosynthesis protein 41 110 1.1E-11 T 23-04-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 THIMO_RS08330 ea8f4b50ed34267e7e2e222569fdbb88 388 PANTHER PTHR19328 38 385 7.0E-74 T 23-04-2016 THIMO_RS08330 ea8f4b50ed34267e7e2e222569fdbb88 388 SUPERFAMILY SSF50952 32 386 9.81E-51 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 THIMO_RS08330 ea8f4b50ed34267e7e2e222569fdbb88 388 Gene3D G3DSA:2.120.10.30 12 387 8.5E-104 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like THIMO_RS08330 ea8f4b50ed34267e7e2e222569fdbb88 388 Pfam PF07995 Glucose / Sorbosone dehydrogenase 48 382 5.1E-128 T 23-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 THIMO_RS14100 925776205ed117b4b28d64d9bb793c4a 372 Pfam PF06804 NlpB/DapX lipoprotein 29 369 3.1E-43 T 23-04-2016 IPR010653 NlpB/DapX lipoprotein THIMO_RS15365 41d597bcb7c63a311cb18e2c41fa512d 153 Pfam PF04319 NifZ domain 3 72 9.6E-32 T 23-04-2016 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 PANTHER PTHR30570:SF1 152 289 1.6E-29 T 23-04-2016 THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 PANTHER PTHR30570:SF1 5 136 1.6E-29 T 23-04-2016 THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 SUPERFAMILY SSF53850 25 340 1.81E-70 T 23-04-2016 THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 Gene3D G3DSA:3.40.190.10 26 184 3.2E-28 T 23-04-2016 THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 Pfam PF12849 PBP superfamily domain 19 310 2.8E-42 T 23-04-2016 IPR024370 PBP domain THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 PANTHER PTHR30570 152 289 1.6E-29 T 23-04-2016 THIMO_RS12100 ac6ac05a04bb9b57d1828d6458de6038 349 PANTHER PTHR30570 5 136 1.6E-29 T 23-04-2016 THIMO_RS11210 38015a71de604d5c58feaf50ddea52af 114 SUPERFAMILY SSF54913 2 101 5.78E-24 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta THIMO_RS11210 38015a71de604d5c58feaf50ddea52af 114 Pfam PF02641 Uncharacterized ACR, COG1993 6 86 7.2E-19 T 23-04-2016 IPR003793 Domain of unknown function DUF190 THIMO_RS11210 38015a71de604d5c58feaf50ddea52af 114 PANTHER PTHR35983 1 86 4.0E-13 T 23-04-2016 THIMO_RS11210 38015a71de604d5c58feaf50ddea52af 114 Gene3D G3DSA:3.30.70.120 3 111 1.2E-27 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal THIMO_RS11170 2a2b3840bb9206548607b83b891fea3a 133 Pfam PF09350 Domain of unknown function (DUF1992) 18 84 3.5E-22 T 23-04-2016 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain THIMO_RS11170 2a2b3840bb9206548607b83b891fea3a 133 PANTHER PTHR39158 14 133 2.1E-21 T 23-04-2016 THIMO_RS17540 7f4caf2279182bf0cb3317fc98e541e5 149 Pfam PF05099 Tellurite resistance protein TerB 11 147 9.6E-26 T 23-04-2016 IPR007791 Co-chaperone DjlA, N-terminal THIMO_RS17540 7f4caf2279182bf0cb3317fc98e541e5 149 SUPERFAMILY SSF158682 15 148 1.16E-24 T 23-04-2016 IPR029024 TerB-like THIMO_RS17540 7f4caf2279182bf0cb3317fc98e541e5 149 Gene3D G3DSA:1.10.3680.10 5 147 1.4E-27 T 23-04-2016 IPR029024 TerB-like THIMO_RS13935 754ce3242d7da963934677c3c18e9bcc 607 Pfam PF13584 Oxygen tolerance 19 510 3.8E-103 T 23-04-2016 IPR025738 Aerotolerance-related protein BatD THIMO_RS13935 754ce3242d7da963934677c3c18e9bcc 607 PANTHER PTHR40940 1 246 1.5E-57 T 23-04-2016 THIMO_RS13935 754ce3242d7da963934677c3c18e9bcc 607 PANTHER PTHR40940 267 582 1.5E-57 T 23-04-2016 THIMO_RS13935 754ce3242d7da963934677c3c18e9bcc 607 PANTHER PTHR40940:SF1 1 246 1.5E-57 T 23-04-2016 THIMO_RS13935 754ce3242d7da963934677c3c18e9bcc 607 PANTHER PTHR40940:SF1 267 582 1.5E-57 T 23-04-2016 THIMO_RS15205 5d1d9ba9202f398b0e8165759f296751 192 Pfam PF07486 Cell Wall Hydrolase 65 173 7.1E-28 T 23-04-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 THIMO_RS15205 5d1d9ba9202f398b0e8165759f296751 192 PANTHER PTHR21666 53 186 1.8E-12 T 23-04-2016 THIMO_RS15205 5d1d9ba9202f398b0e8165759f296751 192 PANTHER PTHR21666:SF178 53 186 1.8E-12 T 23-04-2016 THIMO_RS07275 06445cc38f6437f870140cf07cb44c7f 374 Pfam PF01594 Domain of unknown function DUF20 35 347 2.3E-43 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS07275 06445cc38f6437f870140cf07cb44c7f 374 PANTHER PTHR21716 32 366 1.1E-49 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like THIMO_RS16495 457b0a9ef27b5e7163f028668f2d3e2a 68 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 15 47 2.7E-8 T 23-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 THIMO_RS11320 08e3e347251a348833605b510f949ac0 223 SUPERFAMILY SSF53335 7 191 2.36E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11320 08e3e347251a348833605b510f949ac0 223 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 24 212 6.4E-27 T 23-04-2016 THIMO_RS11320 08e3e347251a348833605b510f949ac0 223 PANTHER PTHR11579 1 217 5.3E-25 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 THIMO_RS11320 08e3e347251a348833605b510f949ac0 223 PANTHER PTHR11579:SF0 1 217 5.3E-25 T 23-04-2016 THIMO_RS11320 08e3e347251a348833605b510f949ac0 223 Gene3D G3DSA:3.40.50.150 14 215 3.0E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase THIMO_RS11845 3bc7c296d06697ff67ddb9a0f4107c98 72 Pfam PF11127 Protein of unknown function (DUF2892) 7 65 4.4E-21 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 THIMO_RS18080 f505246b30de134e7123054ca080ba2c 182 Pfam PF00487 Fatty acid desaturase 15 167 2.2E-12 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 THIMO_RS18160 e703d985d24388355faaa4e4cbc4b11a 375 Pfam PF03782 AMOP domain 149 230 1.4E-7 T 23-04-2016 IPR005533 AMOP domain THIMO_RS18160 e703d985d24388355faaa4e4cbc4b11a 375 SMART SM00723 130 279 6.3E-4 T 23-04-2016 IPR005533 AMOP domain THIMO_RS18160 e703d985d24388355faaa4e4cbc4b11a 375 Pfam PF13699 Domain of unknown function (DUF4157) 14 89 7.8E-25 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 THIMO_RS04055 fe3a0fe0ea5ad76ee7c65d19052407a8 149 PANTHER PTHR38774 8 147 1.1E-19 T 23-04-2016 THIMO_RS04055 fe3a0fe0ea5ad76ee7c65d19052407a8 149 PANTHER PTHR38774:SF1 8 147 1.1E-19 T 23-04-2016 THIMO_RS04055 fe3a0fe0ea5ad76ee7c65d19052407a8 149 Pfam PF06853 Protein of unknown function (DUF1249) 34 148 1.6E-27 T 23-04-2016 IPR009659 Protein of unknown function DUF1249 THIMO_RS10455 10b11405ebafd961e1c89464a4b6a58a 530 Pfam PF04262 Glutamate-cysteine ligase 22 383 1.9E-151 T 23-04-2016 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 THIMO_RS10455 10b11405ebafd961e1c89464a4b6a58a 530 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 530 185.746 T 23-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 THIMO_RS10455 10b11405ebafd961e1c89464a4b6a58a 530 SUPERFAMILY SSF55931 13 520 6.54E-172 T 23-04-2016 THIMO_RS10455 10b11405ebafd961e1c89464a4b6a58a 530 PANTHER PTHR38761 5 530 2.8E-194 T 23-04-2016 THIMO_RS10455 10b11405ebafd961e1c89464a4b6a58a 530 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 29 522 2.9E-160 T 23-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 THIMO_RS03970 0f8af6c5a4928eb4ab898e28e7e186ce 129 PANTHER PTHR33931 5 112 3.2E-18 T 23-04-2016 THIMO_RS03970 0f8af6c5a4928eb4ab898e28e7e186ce 129 Pfam PF03788 LrgA family 12 112 5.5E-25 T 23-04-2016 IPR005538 LrgA/CidA family GO:0016021 THIMO_RS03970 0f8af6c5a4928eb4ab898e28e7e186ce 129 PANTHER PTHR33931:SF2 5 112 3.2E-18 T 23-04-2016 THIMO_RS04550 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 PANTHER PTHR41709 1 90 1.8E-27 T 23-04-2016 THIMO_RS04550 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 Pfam PF07689 KaiB domain 8 89 1.8E-21 T 23-04-2016 IPR011649 KaiB domain GO:0048511 THIMO_RS04550 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 SUPERFAMILY SSF52833 5 90 4.85E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS04550 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 PANTHER PTHR41709:SF2 1 90 1.8E-27 T 23-04-2016 THIMO_RS04550 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 SMART SM01248 7 90 6.6E-35 T 23-04-2016 IPR011649 KaiB domain GO:0048511 THIMO_RS04550 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 Gene3D G3DSA:3.40.30.10 5 90 1.5E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold THIMO_RS15225 4558dab0a623187f021d79977edd02ed 314 PANTHER PTHR11432:SF1 5 306 5.6E-99 T 23-04-2016 THIMO_RS15225 4558dab0a623187f021d79977edd02ed 314 Pfam PF00146 NADH dehydrogenase 11 302 2.9E-40 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS15225 4558dab0a623187f021d79977edd02ed 314 PANTHER PTHR11432 5 306 5.6E-99 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 THIMO_RS16565 ac93b59c46154933a336c52680e6f802 61 Pfam PF13617 YnbE-like lipoprotein 5 59 1.1E-27 T 23-04-2016 IPR025985 YnbE-like lipoprotein THIMO_RS16565 ac93b59c46154933a336c52680e6f802 61 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 17 61 5.0E-12 T 23-04-2016 THIMO_RS02420 551f8d2e97d86b45aaeefdaa223b2a02 272 PANTHER PTHR38034 4 268 2.0E-71 T 23-04-2016 THIMO_RS02420 551f8d2e97d86b45aaeefdaa223b2a02 272 Pfam PF01578 Cytochrome C assembly protein 43 265 8.9E-34 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 THIMO_RS06275 41aa4ac2d016dea923a09d97d85edb19 192 Pfam PF00582 Universal stress protein family 1 107 4.4E-7 T 23-04-2016 IPR006016 UspA GO:0006950 THIMO_RS06275 41aa4ac2d016dea923a09d97d85edb19 192 SUPERFAMILY SSF52402 1 108 1.51E-11 T 23-04-2016 THIMO_RS06275 41aa4ac2d016dea923a09d97d85edb19 192 Gene3D G3DSA:3.40.50.620 1 108 1.6E-11 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold THIMO_RS18300 8f6ae266ac2bdea6b868c28e5350456e 203 Gene3D G3DSA:3.30.70.1070 125 202 4.9E-20 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS18300 8f6ae266ac2bdea6b868c28e5350456e 203 SUPERFAMILY SSF110997 126 201 3.79E-17 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS18300 8f6ae266ac2bdea6b868c28e5350456e 203 Pfam PF05036 Sporulation related domain 128 201 7.8E-16 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 THIMO_RS17550 c20a17c7139ee5a4d7a0f19ecdc3191a 190 Pfam PF02342 TerD domain 1 187 1.3E-82 T 23-04-2016 IPR003325 TerD domain GO:0006950 THIMO_RS17550 c20a17c7139ee5a4d7a0f19ecdc3191a 190 PANTHER PTHR32097 1 190 3.9E-86 T 23-04-2016 THIMO_RS17550 c20a17c7139ee5a4d7a0f19ecdc3191a 190 Gene3D G3DSA:2.60.60.30 18 185 1.3E-70 T 23-04-2016 THIMO_RS15595 481f3fc15656c590cd082032d5796483 846 Pfam PF10101 Predicted membrane protein (DUF2339) 107 563 2.2E-97 T 23-04-2016 IPR019286 Protein of unknown function DUF2339, transmembrane THIMO_RS15595 481f3fc15656c590cd082032d5796483 846 Pfam PF10101 Predicted membrane protein (DUF2339) 430 837 2.0E-31 T 23-04-2016 IPR019286 Protein of unknown function DUF2339, transmembrane THIMO_RS15595 481f3fc15656c590cd082032d5796483 846 PANTHER PTHR38434:SF1 54 841 3.8E-55 T 23-04-2016 THIMO_RS15595 481f3fc15656c590cd082032d5796483 846 PANTHER PTHR38434 54 841 3.8E-55 T 23-04-2016 THIMO_RS09730 1f2597eb74f4378b1d93c84359c888ac 249 Pfam PF07592 Rhodopirellula transposase DDE domain 82 249 2.4E-73 T 23-04-2016 IPR011518 Transposase, Rhodopirellula-type THIMO_RS16940 8979642d95492b611783976cb2df8ace 199 SUPERFAMILY SSF141523 67 180 3.14E-26 T 23-04-2016 THIMO_RS16940 8979642d95492b611783976cb2df8ace 199 Gene3D G3DSA:2.40.440.10 62 180 5.8E-22 T 23-04-2016 THIMO_RS16940 8979642d95492b611783976cb2df8ace 199 Pfam PF03734 L,D-transpeptidase catalytic domain 69 180 7.9E-20 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 THIMO_RS16940 8979642d95492b611783976cb2df8ace 199 PANTHER PTHR30582 49 186 7.1E-27 T 23-04-2016 THIMO_RS08550 9d9a7eb96cba051be3793a5f757f6985 117 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 105 2.4E-24 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 THIMO_RS08550 9d9a7eb96cba051be3793a5f757f6985 117 PANTHER PTHR34583:SF1 1 117 8.8E-47 T 23-04-2016 THIMO_RS08550 9d9a7eb96cba051be3793a5f757f6985 117 PANTHER PTHR34583 1 117 8.8E-47 T 23-04-2016 THIMO_RS06145 049b36c7cce2f3937652353686d13270 78 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 45 2.3E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS06145 049b36c7cce2f3937652353686d13270 78 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 42 9.1E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS06145 049b36c7cce2f3937652353686d13270 78 Gene3D G3DSA:3.40.1620.10 4 42 3.1E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM THIMO_RS06145 049b36c7cce2f3937652353686d13270 78 SUPERFAMILY SSF143120 4 44 2.75E-10 T 23-04-2016 THIMO_RS10365 947e905b6b7610aa87b5fdc3eb145ed2 81 Pfam PF01927 Mut7-C RNAse domain 10 70 7.8E-16 T 23-04-2016 IPR002782 Mut7-C RNAse domain THIMO_RS07500 438c980299d002341e062b2d07ea8787 74 Pfam PF11809 Domain of unknown function (DUF3330) 15 55 5.0E-9 T 23-04-2016 IPR021767 Protein of unknown function DUF3330 THIMO_RS13425 24402db0c65e2d31052017f1e08b51c1 372 Gene3D G3DSA:3.40.50.280 246 369 8.9E-24 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS13425 24402db0c65e2d31052017f1e08b51c1 372 Pfam PF02310 B12 binding domain 248 350 3.0E-21 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS13425 24402db0c65e2d31052017f1e08b51c1 372 Pfam PF02607 B12 binding domain 164 235 3.9E-12 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain THIMO_RS13425 24402db0c65e2d31052017f1e08b51c1 372 SUPERFAMILY SSF52242 246 368 6.15E-27 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 THIMO_RS08390 f1a2aede2879398ab54d2181ce7b436d 375 Pfam PF13860 FlgD Ig-like domain 53 123 4.6E-9 T 23-04-2016 IPR025965 FlgD Ig-like domain THIMO_RS07990 0024feb11f4453785731f8febf6d9777 179 Pfam PF07295 Zinc-ribbon containing domain 27 171 1.2E-49 T 23-04-2016 IPR009912 Zinc-ribbon containing domain THIMO_RS08745 aacfa5dc4cae9c913b095e7584ae3c74 111 Pfam PF16137 Domain of unknown function (DUF4845) 17 102 9.3E-21 T 23-04-2016 IPR032314 Protein of unknown function DUF4845 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 552 561 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 Gene3D G3DSA:1.10.645.10 171 561 4.9E-203 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 Gene3D G3DSA:1.10.645.10 1 127 4.9E-203 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 Pfam PF00374 Nickel-dependent hydrogenase 39 561 9.5E-230 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993:SF11 362 528 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993:SF11 1 116 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993:SF11 544 572 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993:SF11 186 254 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 SUPERFAMILY SSF56762 1 561 1.09E-174 T 23-04-2016 IPR029014 NiFe hydrogenase-like THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993 362 528 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993 1 116 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993 544 572 4.5E-195 T 23-04-2016 THIMO_RS15905 936cae33230a030a993ad8859a53c3f8 576 PANTHER PTHR11993 186 254 4.5E-195 T 23-04-2016 THIMO_RS02835 03ed42bf5878b519dc5ee1b8ba15f0af 205 PANTHER PTHR33269:SF1 1 197 5.3E-58 T 23-04-2016 THIMO_RS02835 03ed42bf5878b519dc5ee1b8ba15f0af 205 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 20 164 4.6E-37 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 THIMO_RS02835 03ed42bf5878b519dc5ee1b8ba15f0af 205 PANTHER PTHR33269 1 197 5.3E-58 T 23-04-2016 THIMO_RS07735 f2d16d93ff6650327888b743088ff972 490 Pfam PF00817 impB/mucB/samB family 10 143 3.3E-13 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 THIMO_RS07735 f2d16d93ff6650327888b743088ff972 490 PANTHER PTHR35369:SF2 3 490 7.9E-40 T 23-04-2016 THIMO_RS07735 f2d16d93ff6650327888b743088ff972 490 PANTHER PTHR35369 3 490 7.9E-40 T 23-04-2016 THIMO_RS07735 f2d16d93ff6650327888b743088ff972 490 SUPERFAMILY SSF56672 4 233 1.42E-33 T 23-04-2016 THIMO_RS11495 863652bf272fdf0d404596610762df09 84 Pfam PF13244 Domain of unknown function (DUF4040) 12 75 2.4E-17 T 23-04-2016 IPR025383 Domain of unknown function DUF4040 THIMO_RS11495 863652bf272fdf0d404596610762df09 84 PANTHER PTHR33932 5 81 1.0E-14 T 23-04-2016 THIMO_RS11495 863652bf272fdf0d404596610762df09 84 PANTHER PTHR33932:SF1 5 81 1.0E-14 T 23-04-2016 THIMO_RS16955 3758b9100fe6ca43548b5a8aaeda9afa 421 Pfam PF14907 Uncharacterised nucleotidyltransferase 37 291 8.3E-56 T 23-04-2016 THIMO_RS03810 f650f14ec0f8825e831fd6f5f32a554e 933 Pfam PF04865 Baseplate J-like protein 691 776 2.9E-6 T 23-04-2016 IPR006949 Baseplate protein J-like THIMO_RS03810 f650f14ec0f8825e831fd6f5f32a554e 933 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 522 888 5.3E-51 T 23-04-2016 IPR011749 Conserved hypothetical protein CHP02243 THIMO_RS02330 886c799a238c204f932c043107d6b5d5 116 Pfam PF04071 Cysteine-rich small domain 13 74 1.9E-11 T 23-04-2016 IPR007212 Cysteine-rich small domain THIMO_RS04245 dc1442af18a3bec8b0469b05dbedf928 222 SUPERFAMILY SSF52540 46 203 6.07E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04245 dc1442af18a3bec8b0469b05dbedf928 222 SMART SM00382 78 205 1.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS04245 dc1442af18a3bec8b0469b05dbedf928 222 Pfam PF01695 IstB-like ATP binding protein 80 200 4.6E-18 T 23-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 THIMO_RS04245 dc1442af18a3bec8b0469b05dbedf928 222 Gene3D G3DSA:3.40.50.300 27 205 4.2E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04245 dc1442af18a3bec8b0469b05dbedf928 222 PANTHER PTHR30050:SF7 43 221 2.0E-34 T 23-04-2016 THIMO_RS04245 dc1442af18a3bec8b0469b05dbedf928 222 PANTHER PTHR30050 43 221 2.0E-34 T 23-04-2016 THIMO_RS15315 e2aa2efa060b5d8a640a50c3ad2c667b 128 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 1 120 1.1E-50 T 23-04-2016 IPR009387 Toxin HigB-2 THIMO_RS15315 e2aa2efa060b5d8a640a50c3ad2c667b 128 PIRSF PIRSF018634 1 124 4.2E-51 T 23-04-2016 IPR009387 Toxin HigB-2 THIMO_RS13955 5bd65928476b90e3f98ffa4879acc073 311 Pfam PF01882 Protein of unknown function DUF58 56 140 1.4E-20 T 23-04-2016 IPR002881 Domain of unknown function DUF58 THIMO_RS13955 5bd65928476b90e3f98ffa4879acc073 311 PANTHER PTHR33608:SF6 13 297 8.7E-74 T 23-04-2016 THIMO_RS13955 5bd65928476b90e3f98ffa4879acc073 311 PANTHER PTHR33608 13 297 8.7E-74 T 23-04-2016 THIMO_RS13955 5bd65928476b90e3f98ffa4879acc073 311 SUPERFAMILY SSF53300 92 225 1.11E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 SUPERFAMILY SSF52540 106 374 1.17E-94 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 36 447 9.0E-193 T 23-04-2016 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 PANTHER PTHR15184 12 450 8.1E-223 T 23-04-2016 THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 159 369 3.3E-72 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 Gene3D G3DSA:3.40.50.300 107 371 1.5E-90 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 SMART SM00382 171 353 5.7E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 PANTHER PTHR15184:SF9 12 450 8.1E-223 T 23-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 360 369 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS01310 11bcc596562248d205b82b34671bc8e6 457 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 17 449 1.0E-173 T 23-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 Pfam PF00263 Bacterial type II and III secretion system protein 373 553 1.4E-38 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 368 392 1.6E-13 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 519 537 1.6E-13 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 542 556 1.6E-13 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 290 300 1.6E-13 T 23-04-2016 IPR001775 GspD/PilQ family THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 PANTHER PTHR30332 253 625 9.3E-44 T 23-04-2016 THIMO_RS03130 48e00a26fce4eea4bcc63682751eb51f 738 Pfam PF11920 Protein of unknown function (DUF3438) 620 734 7.2E-11 T 23-04-2016 IPR021844 Integrating conjugative element protein, PFL4704 THIMO_RS18180 a1bf4926fdbd6b38e5fe306454df5148 483 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 44 205 1.3E-23 T 23-04-2016 THIMO_RS18180 a1bf4926fdbd6b38e5fe306454df5148 483 PANTHER PTHR33908 1 355 2.3E-16 T 23-04-2016 THIMO_RS02405 5b468264c708db336d041b77c3b4f323 120 Gene3D G3DSA:1.20.120.160 2 110 1.0E-24 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS02405 5b468264c708db336d041b77c3b4f323 120 SUPERFAMILY SSF47226 3 110 7.98E-22 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS02405 5b468264c708db336d041b77c3b4f323 120 Pfam PF01627 Hpt domain 27 106 1.4E-12 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 THIMO_RS00790 a9a3ee93b407e6e8ba11d35b12e10357 107 Pfam PF05957 Bacterial protein of unknown function (DUF883) 12 101 5.2E-16 T 23-04-2016 IPR010279 Protein of unknown function DUF883, ElaB THIMO_RS00790 a9a3ee93b407e6e8ba11d35b12e10357 107 Gene3D G3DSA:1.20.120.20 10 79 9.2E-4 T 23-04-2016 THIMO_RS00790 a9a3ee93b407e6e8ba11d35b12e10357 107 SUPERFAMILY SSF58113 12 80 3.27E-6 T 23-04-2016 THIMO_RS07110 1c2e8aeb1cd81c3d9c5e71a6fe8b05d6 70 Gene3D G3DSA:3.90.1570.10 6 62 8.1E-5 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 THIMO_RS07110 1c2e8aeb1cd81c3d9c5e71a6fe8b05d6 70 Pfam PF05685 Putative restriction endonuclease 13 60 6.2E-7 T 23-04-2016 IPR008538 Domain of unknown function DUF820 THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 20 128 4.4E-33 T 23-04-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 4.0E-24 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 4.0E-24 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 4.0E-24 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 4.0E-24 T 23-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PANTHER PTHR30487 61 292 7.7E-98 T 23-04-2016 THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PANTHER PTHR30487 2 38 7.7E-98 T 23-04-2016 THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 Pfam PF01478 Type IV leader peptidase family 138 247 4.0E-23 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PANTHER PTHR30487:SF0 61 292 7.7E-98 T 23-04-2016 THIMO_RS04980 dadaba3520e7c7f91d2fc3c31e229604 292 PANTHER PTHR30487:SF0 2 38 7.7E-98 T 23-04-2016 THIMO_RS15105 f271d32056429ccdc5a35716e6bbd439 165 SUPERFAMILY SSF75169 38 163 1.13E-17 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS15105 f271d32056429ccdc5a35716e6bbd439 165 Pfam PF02635 DsrE/DsrF-like family 62 163 6.6E-11 T 23-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein THIMO_RS15105 f271d32056429ccdc5a35716e6bbd439 165 Gene3D G3DSA:3.40.1260.10 37 163 1.2E-15 T 23-04-2016 IPR027396 DsrEFH-like THIMO_RS01770 bec7d010e40dc54f2d735189ed3b7cfb 69 Gene3D G3DSA:1.10.10.60 7 56 1.3E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 THIMO_RS18470 c600188050363657abb0bdd8d3581eef 108 Pfam PF13654 AAA domain 1 107 5.7E-26 T 23-04-2016 THIMO_RS18050 10af5e89435c41740bb5a86b3fe287cf 201 Pfam PF10881 Protein of unknown function (DUF2726) 39 161 1.6E-24 T 23-04-2016 IPR024402 Domain of unknown function DUF2726 THIMO_RS06490 8fddf2d72b21b7f46026311c990bab66 55 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 8 46 4.1E-13 T 23-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 THIMO_RS06490 8fddf2d72b21b7f46026311c990bab66 55 Pfam PF04995 Heme exporter protein D (CcmD) 8 46 2.4E-14 T 23-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 THIMO_RS11000 26779333b5941bdf95f2ba21a332be15 81 Pfam PF03869 Arc-like DNA binding domain 10 46 4.7E-6 T 23-04-2016 IPR005569 Arc-like DNA binding domain GO:0003677 THIMO_RS11000 26779333b5941bdf95f2ba21a332be15 81 SUPERFAMILY SSF47598 4 60 1.41E-11 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 THIMO_RS11000 26779333b5941bdf95f2ba21a332be15 81 Gene3D G3DSA:1.10.1220.10 10 46 7.8E-9 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 THIMO_RS01515 9fcf5c6f627ad41afda2dea6c875c7b9 380 TIGRFAM TIGR01898 cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6 88 278 5.9E-24 T 23-04-2016 IPR010172 CRISPR-associated protein, TM1791 THIMO_RS01515 9fcf5c6f627ad41afda2dea6c875c7b9 380 Pfam PF03787 RAMP superfamily 102 278 2.0E-5 T 23-04-2016 IPR005537 CRISPR type III-associated RAMP protein THIMO_RS04620 37804eb2d264a62cc13ea373abba3ccb 100 SUPERFAMILY SSF54909 2 97 1.16E-28 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel THIMO_RS04620 37804eb2d264a62cc13ea373abba3ccb 100 Gene3D G3DSA:3.30.70.1060 2 97 2.5E-32 T 23-04-2016 THIMO_RS04620 37804eb2d264a62cc13ea373abba3ccb 100 Pfam PF03795 YCII-related domain 2 94 4.6E-25 T 23-04-2016 IPR005545 YCII-related THIMO_RS04620 37804eb2d264a62cc13ea373abba3ccb 100 PANTHER PTHR33606 1 98 5.0E-28 T 23-04-2016 THIMO_RS17405 4a4b57a74c62b696510f47b8bcae071f 487 SUPERFAMILY SSF56935 111 246 1.45E-6 T 23-04-2016 THIMO_RS17405 4a4b57a74c62b696510f47b8bcae071f 487 SUPERFAMILY SSF56935 279 487 1.45E-6 T 23-04-2016 THIMO_RS09120 d3ecaef20c3d46b78ca1fed234983304 612 Pfam PF05787 Bacterial protein of unknown function (DUF839) 150 558 8.9E-27 T 23-04-2016 IPR008557 Protein of unknown function DUF839 THIMO_RS03160 09a579e2061951b413348b9c0a7f273d 317 PANTHER PTHR34351 7 311 5.2E-31 T 23-04-2016 THIMO_RS03160 09a579e2061951b413348b9c0a7f273d 317 Pfam PF01882 Protein of unknown function DUF58 208 283 1.0E-12 T 23-04-2016 IPR002881 Domain of unknown function DUF58 THIMO_RS11070 e808364fbfec8df85835b92e22a35ac3 164 Pfam PF02915 Rubrerythrin 108 151 2.1E-5 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 THIMO_RS11070 e808364fbfec8df85835b92e22a35ac3 164 SUPERFAMILY SSF47240 17 154 1.76E-18 T 23-04-2016 IPR009078 Ferritin-like superfamily THIMO_RS11070 e808364fbfec8df85835b92e22a35ac3 164 Gene3D G3DSA:1.20.1260.10 8 156 8.1E-22 T 23-04-2016 IPR012347 Ferritin-related THIMO_RS04470 73ec820963a0a06dba4580d2563ee7a1 260 PANTHER PTHR33973 2 242 6.2E-36 T 23-04-2016 THIMO_RS04470 73ec820963a0a06dba4580d2563ee7a1 260 Pfam PF07103 Protein of unknown function (DUF1365) 5 243 1.0E-59 T 23-04-2016 IPR010775 Protein of unknown function DUF1365 THIMO_RS18075 9cc37e2ff13a7418c9d2866cd0b3ac6d 408 SUPERFAMILY SSF52540 14 60 4.63E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18075 9cc37e2ff13a7418c9d2866cd0b3ac6d 408 SUPERFAMILY SSF52540 169 273 4.63E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18075 9cc37e2ff13a7418c9d2866cd0b3ac6d 408 SUPERFAMILY SSF52540 88 124 4.63E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS18075 9cc37e2ff13a7418c9d2866cd0b3ac6d 408 Gene3D G3DSA:3.40.50.300 14 57 3.1E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS12540 6ae3a62f8cb53ae7b77b95c9a6f8c52d 121 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 16 79 4.5E-14 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 THIMO_RS04515 ab7086da2eaa5bb2a9b4e1717ffab305 186 Pfam PF11939 Protein of unknown function (DUF3457) 23 181 1.9E-27 T 23-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE THIMO_RS04515 ab7086da2eaa5bb2a9b4e1717ffab305 186 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 27 181 2.0E-4 T 23-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE THIMO_RS02460 e8d8c9a8c663a176a0e3d7db74d9f67b 248 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 174 248 2.3E-14 T 23-04-2016 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain THIMO_RS11420 86140096927c70faeaa227e29f188554 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 1.1E-20 T 23-04-2016 IPR019201 Protein of unknown function DUF2065 THIMO_RS05745 2a52519a06d7f06c4baa3fdabebe848d 141 Pfam PF06146 Phosphate-starvation-inducible E 49 114 2.8E-10 T 23-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like THIMO_RS01630 f16591373c1d0894d2b9c70db792b027 98 Pfam PF11295 Protein of unknown function (DUF3096) 14 49 2.2E-14 T 23-04-2016 IPR021446 Protein of unknown function DUF3096 THIMO_RS01630 f16591373c1d0894d2b9c70db792b027 98 Pfam PF11295 Protein of unknown function (DUF3096) 60 91 5.8E-8 T 23-04-2016 IPR021446 Protein of unknown function DUF3096 THIMO_RS10890 322d185295b8f710653e444f1256d5f4 191 PANTHER PTHR32552:SF34 1 190 8.4E-39 T 23-04-2016 THIMO_RS10890 322d185295b8f710653e444f1256d5f4 191 SUPERFAMILY SSF53098 106 190 1.11E-15 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10890 322d185295b8f710653e444f1256d5f4 191 Pfam PF00665 Integrase core domain 104 190 1.7E-11 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS10890 322d185295b8f710653e444f1256d5f4 191 Pfam PF13276 HTH-like domain 31 88 1.8E-12 T 23-04-2016 IPR025948 HTH-like domain THIMO_RS10890 322d185295b8f710653e444f1256d5f4 191 Gene3D G3DSA:3.30.420.10 120 190 3.8E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS10890 322d185295b8f710653e444f1256d5f4 191 PANTHER PTHR32552 1 190 8.4E-39 T 23-04-2016 THIMO_RS17935 e077cc64ecae6cab0706c38a508d2ab9 109 Pfam PF08543 Phosphomethylpyrimidine kinase 3 105 5.1E-20 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 THIMO_RS17935 e077cc64ecae6cab0706c38a508d2ab9 109 SUPERFAMILY SSF53613 4 103 5.24E-22 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS17935 e077cc64ecae6cab0706c38a508d2ab9 109 PANTHER PTHR20858 1 103 3.9E-17 T 23-04-2016 THIMO_RS17935 e077cc64ecae6cab0706c38a508d2ab9 109 PANTHER PTHR20858:SF17 1 103 3.9E-17 T 23-04-2016 THIMO_RS17935 e077cc64ecae6cab0706c38a508d2ab9 109 Gene3D G3DSA:3.40.1190.20 2 106 1.3E-22 T 23-04-2016 IPR029056 Ribokinase-like THIMO_RS06855 1b89ab829fb4192ad6e3174930b2d8d3 399 Pfam PF12704 MacB-like periplasmic core domain 21 241 7.4E-30 T 23-04-2016 IPR025857 MacB-like periplasmic core domain THIMO_RS06855 1b89ab829fb4192ad6e3174930b2d8d3 399 Pfam PF02687 FtsX-like permease family 280 392 1.3E-18 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 THIMO_RS06855 1b89ab829fb4192ad6e3174930b2d8d3 399 PANTHER PTHR30572 1 399 1.8E-78 T 23-04-2016 THIMO_RS02165 07c4dbc46595c71edfa0d736aa5943b0 85 Pfam PF13711 Domain of unknown function (DUF4160) 4 69 1.0E-22 T 23-04-2016 IPR025427 Protein of unknown function DUF4160 THIMO_RS11260 988e08f47f5d236c969bb23d4ca5ba23 66 PANTHER PTHR30007:SF0 1 65 6.5E-13 T 23-04-2016 THIMO_RS11260 988e08f47f5d236c969bb23d4ca5ba23 66 PANTHER PTHR30007 1 65 6.5E-13 T 23-04-2016 THIMO_RS11260 988e08f47f5d236c969bb23d4ca5ba23 66 Pfam PF13586 Transposase DDE domain 2 65 1.2E-17 T 23-04-2016 IPR025668 Transposase DDE domain THIMO_RS14600 584c46dfb39212bf37d6aec29f2f5efe 432 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 89 160 2.2E-15 T 23-04-2016 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal THIMO_RS14600 584c46dfb39212bf37d6aec29f2f5efe 432 PANTHER PTHR31332 6 335 2.2E-19 T 23-04-2016 THIMO_RS14600 584c46dfb39212bf37d6aec29f2f5efe 432 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 176 339 2.5E-35 T 23-04-2016 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal THIMO_RS14785 49bfa9a0b38ec3671775ac69c7275cc4 396 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 20 376 2.1E-125 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 THIMO_RS14785 49bfa9a0b38ec3671775ac69c7275cc4 396 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 18 387 38.887 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 THIMO_RS14785 49bfa9a0b38ec3671775ac69c7275cc4 396 PANTHER PTHR30474:SF2 1 396 5.6E-150 T 23-04-2016 THIMO_RS14785 49bfa9a0b38ec3671775ac69c7275cc4 396 Pfam PF01098 Cell cycle protein 24 379 1.0E-100 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 THIMO_RS14785 49bfa9a0b38ec3671775ac69c7275cc4 396 PANTHER PTHR30474 1 396 5.6E-150 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 THIMO_RS01850 c5010bd4661c2e4f66fe4e102f1207db 147 Pfam PF12276 Protein of unknown function (DUF3617) 1 146 4.3E-17 T 23-04-2016 IPR022061 Protein of unknown function DUF3617 THIMO_RS15855 ade3b5dcb2b905e9456104926afa921a 63 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 5.1E-22 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 THIMO_RS07455 bcd4703f0a4804b68d7cd79e9dcab487 419 Pfam PF00665 Integrase core domain 210 302 2.2E-7 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 THIMO_RS07455 bcd4703f0a4804b68d7cd79e9dcab487 419 SUPERFAMILY SSF53098 200 321 5.01E-11 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS07455 bcd4703f0a4804b68d7cd79e9dcab487 419 Gene3D G3DSA:3.30.420.10 200 305 2.2E-10 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 THIMO_RS12260 50ab0227919ee882d7d47dfa65f01223 236 SUPERFAMILY SSF53300 38 199 3.11E-7 T 23-04-2016 IPR002035 von Willebrand factor, type A THIMO_RS05700 f64a7ea5b00b33fcd7b1c2e958ef6ce1 69 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 5 67 2.1E-17 T 23-04-2016 IPR012662 Conserved hypothetical protein CHP02449 THIMO_RS16190 40b43393ed9bd9487aadfca61d5469cf 193 Pfam PF06577 Protein of unknown function (DUF1134) 34 193 1.2E-70 T 23-04-2016 IPR008325 Uncharacterised conserved protein UCP033924 THIMO_RS14165 2b8aa4f7891262723a135cbeb226d298 300 SUPERFAMILY SSF53448 6 239 3.71E-6 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases THIMO_RS17490 39f725e9995cafdb7adc6e8d6756f226 170 Pfam PF13511 Domain of unknown function (DUF4124) 10 58 8.6E-11 T 23-04-2016 IPR025392 Domain of unknown function DUF4124 THIMO_RS16150 a85ab84f6fe7e0102765fe1219ad36de 127 Pfam PF07813 LTXXQ motif family protein 33 116 3.2E-5 T 23-04-2016 IPR012899 LTXXQ motif family protein GO:0042597 THIMO_RS00985 f0a2435727251ad335271c50a02db39b 261 SMART SM00255 6 121 0.0014 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS00985 f0a2435727251ad335271c50a02db39b 261 SUPERFAMILY SSF52200 3 107 1.23E-22 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS00985 f0a2435727251ad335271c50a02db39b 261 Pfam PF13676 TIR domain 9 112 1.5E-18 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS00985 f0a2435727251ad335271c50a02db39b 261 Gene3D G3DSA:3.40.50.10140 7 116 2.3E-18 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 THIMO_RS11500 208b8abc94faeb62e9ee9e3132f65e7f 253 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 110 231 4.8E-22 T 23-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein THIMO_RS11500 208b8abc94faeb62e9ee9e3132f65e7f 253 PANTHER PTHR33932:SF4 57 245 1.1E-48 T 23-04-2016 THIMO_RS11500 208b8abc94faeb62e9ee9e3132f65e7f 253 PANTHER PTHR33932 57 245 1.1E-48 T 23-04-2016 THIMO_RS10735 8057e397275a38476cce171d8770ef5f 369 Pfam PF07705 CARDB 86 224 2.3E-10 T 23-04-2016 IPR011635 CARDB domain THIMO_RS11505 4595dbf871a8235e8b25f5628c2f0fed 125 PANTHER PTHR34583:SF2 10 125 1.5E-24 T 23-04-2016 THIMO_RS11505 4595dbf871a8235e8b25f5628c2f0fed 125 PANTHER PTHR34583 10 125 1.5E-24 T 23-04-2016 THIMO_RS11505 4595dbf871a8235e8b25f5628c2f0fed 125 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 15 119 1.2E-26 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 THIMO_RS04135 c9284a1a7648bd590d50302901030304 119 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 6 104 5.1E-7 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 THIMO_RS04135 c9284a1a7648bd590d50302901030304 119 SUPERFAMILY SSF50118 2 108 2.4E-13 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor THIMO_RS06120 448e705234e2d7877afff47b1df0c45f 405 Pfam PF09617 CRISPR-associated protein GSU0053 (Cas_GSU0053) 21 193 4.0E-56 T 23-04-2016 IPR013403 CRISPR-associated protein GSU0053 THIMO_RS06120 448e705234e2d7877afff47b1df0c45f 405 TIGRFAM TIGR02570 cas7_GSU0053: CRISPR-associated protein GSU0053/csb1, Dpsyc system 23 199 4.3E-20 T 23-04-2016 IPR013403 CRISPR-associated protein GSU0053 THIMO_RS04405 48993598b34d72ce3584cbddb23ffa9c 273 Gene3D G3DSA:3.20.20.450 35 182 9.9E-5 T 23-04-2016 IPR001633 EAL domain THIMO_RS04405 48993598b34d72ce3584cbddb23ffa9c 273 Pfam PF00563 EAL domain 36 216 3.1E-6 T 23-04-2016 IPR001633 EAL domain THIMO_RS04405 48993598b34d72ce3584cbddb23ffa9c 273 SUPERFAMILY SSF141868 35 183 3.4E-8 T 23-04-2016 IPR001633 EAL domain THIMO_RS01120 d3ebe162a17a3be9d1a9b711e47467d8 306 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 1 296 1.1E-77 T 23-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 THIMO_RS01120 d3ebe162a17a3be9d1a9b711e47467d8 306 PANTHER PTHR30578 1 306 6.3E-77 T 23-04-2016 THIMO_RS01120 d3ebe162a17a3be9d1a9b711e47467d8 306 Pfam PF03116 NQR2, RnfD, RnfE family 1 297 5.0E-94 T 23-04-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 THIMO_RS05105 12815f6fcb744c1b092ca504fa3e166e 433 Pfam PF11902 Protein of unknown function (DUF3422) 7 426 1.8E-164 T 23-04-2016 IPR021830 Protein of unknown function DUF3422 THIMO_RS06440 2ba317b2c69354bf9fa7a3b94fa09f60 67 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 1.0E-18 T 23-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type THIMO_RS06440 2ba317b2c69354bf9fa7a3b94fa09f60 67 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 5.3E-13 T 23-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type THIMO_RS09795 0305816f6e011986387ea78f412ba910 62 Pfam PF10636 Hemin uptake protein hemP 26 62 5.0E-16 T 23-04-2016 IPR019600 Hemin uptake protein HemP THIMO_RS09795 0305816f6e011986387ea78f412ba910 62 Gene3D G3DSA:2.10.70.10 24 62 2.7E-16 T 23-04-2016 THIMO_RS03975 30b5922923c1273f9b5cef38084e0ea5 294 SUPERFAMILY SSF53474 62 241 4.2E-19 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS03975 30b5922923c1273f9b5cef38084e0ea5 294 Gene3D G3DSA:3.40.50.1820 63 238 6.7E-16 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold THIMO_RS16560 ef0922aac47b0b05c4046a8e9da71ad4 88 Pfam PF07027 Protein of unknown function (DUF1318) 14 84 1.1E-17 T 23-04-2016 IPR008309 Uncharacterised conserved protein UCP025560 THIMO_RS18205 f518013f7cc6c7c2d342b1122b7c9d71 246 PANTHER PTHR34611 1 156 2.4E-21 T 23-04-2016 THIMO_RS18205 f518013f7cc6c7c2d342b1122b7c9d71 246 Pfam PF04754 Putative transposase, YhgA-like 1 159 1.2E-36 T 23-04-2016 IPR006842 Transposase (putative), YhgA-like THIMO_RS07480 548675de148831580abe5796f9f9b980 339 Pfam PF02470 MlaD protein 40 146 6.5E-13 T 23-04-2016 IPR003399 Mce/MlaD THIMO_RS00405 9bb63fd09315cc84cb2df564878b484f 171 PIRSF PIRSF016481 2 171 1.4E-47 T 23-04-2016 IPR007446 Pilus assembly protein PilP THIMO_RS00405 9bb63fd09315cc84cb2df564878b484f 171 Pfam PF04351 Pilus assembly protein, PilP 26 169 5.4E-52 T 23-04-2016 IPR007446 Pilus assembly protein PilP THIMO_RS10005 1cf953374b26ee11680c843c1bd23f2f 320 SUPERFAMILY SSF48371 111 234 2.97E-11 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 THIMO_RS10005 1cf953374b26ee11680c843c1bd23f2f 320 SUPERFAMILY SSF48371 15 63 2.97E-11 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 THIMO_RS10005 1cf953374b26ee11680c843c1bd23f2f 320 Gene3D G3DSA:1.25.10.10 10 252 2.0E-8 T 23-04-2016 IPR011989 Armadillo-like helical THIMO_RS11075 7ea8815003ffedb2208b5c6b3567c55e 146 Gene3D G3DSA:3.40.50.10110 4 143 1.8E-46 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 THIMO_RS11075 7ea8815003ffedb2208b5c6b3567c55e 146 PANTHER PTHR38767 4 146 2.9E-36 T 23-04-2016 THIMO_RS11075 7ea8815003ffedb2208b5c6b3567c55e 146 Pfam PF04364 DNA polymerase III chi subunit, HolC 4 138 3.5E-39 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 THIMO_RS11075 7ea8815003ffedb2208b5c6b3567c55e 146 SUPERFAMILY SSF102400 4 143 2.88E-43 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 THIMO_RS02400 44691105e04bb59c1568964227405efb 192 Gene3D G3DSA:3.20.20.140 5 187 2.7E-8 T 23-04-2016 THIMO_RS02400 44691105e04bb59c1568964227405efb 192 SUPERFAMILY SSF89550 3 172 1.44E-15 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 THIMO_RS11220 74555fb03ca8b5ce2e3d8a595995325b 139 Pfam PF00472 RF-1 domain 6 133 5.8E-24 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 THIMO_RS11220 74555fb03ca8b5ce2e3d8a595995325b 139 SUPERFAMILY SSF110916 15 101 7.32E-11 T 23-04-2016 THIMO_RS11220 74555fb03ca8b5ce2e3d8a595995325b 139 PANTHER PTHR11075 10 135 6.0E-33 T 23-04-2016 THIMO_RS11220 74555fb03ca8b5ce2e3d8a595995325b 139 Gene3D G3DSA:3.30.160.200 2 107 3.5E-29 T 23-04-2016 THIMO_RS11220 74555fb03ca8b5ce2e3d8a595995325b 139 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 THIMO_RS08285 fcaf6768f9f237a5a5059b2555efc494 687 Pfam PF07793 Protein of unknown function (DUF1631) 15 683 7.7E-127 T 23-04-2016 IPR012434 Protein of unknown function DUF1631 THIMO_RS09785 20248e4b033bee1ebe106bcb91848f82 264 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 9 257 4.4E-56 T 23-04-2016 IPR005226 UPF0014 family THIMO_RS09785 20248e4b033bee1ebe106bcb91848f82 264 Pfam PF03649 Uncharacterised protein family (UPF0014) 9 251 1.1E-83 T 23-04-2016 IPR005226 UPF0014 family THIMO_RS09785 20248e4b033bee1ebe106bcb91848f82 264 PANTHER PTHR30028:SF0 1 263 5.4E-70 T 23-04-2016 IPR005226 UPF0014 family THIMO_RS09785 20248e4b033bee1ebe106bcb91848f82 264 PANTHER PTHR30028 1 263 5.4E-70 T 23-04-2016 THIMO_RS07210 70cd85c80224375d7c3d3df9ed296452 257 Pfam PF11251 Protein of unknown function (DUF3050) 16 249 2.6E-85 T 23-04-2016 IPR024423 Protein of unknown function DUF3050 THIMO_RS07210 70cd85c80224375d7c3d3df9ed296452 257 SUPERFAMILY SSF48613 117 254 1.6E-6 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 THIMO_RS15140 7506477305a23392943369c8274c74a2 129 Pfam PF02472 Biopolymer transport protein ExbD/TolR 6 125 3.9E-25 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 THIMO_RS15140 7506477305a23392943369c8274c74a2 129 PANTHER PTHR30558 5 127 2.8E-25 T 23-04-2016 THIMO_RS18500 4ad058afbc176b5d1aa940f8846ae177 306 Pfam PF12483 E3 Ubiquitin ligase 92 187 1.7E-5 T 23-04-2016 IPR022170 Mitochondrial ubiquitin ligase activator of NFKB 1 GO:0004842|GO:0007005 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.-|UniPathway: UPA00143 THIMO_RS14570 6154b6af5753c91c3f87928a6a9b13fe 230 PANTHER PTHR33678:SF1 3 157 1.1E-25 T 23-04-2016 THIMO_RS14570 6154b6af5753c91c3f87928a6a9b13fe 230 Pfam PF03050 Transposase IS66 family 2 117 1.8E-27 T 23-04-2016 IPR004291 Transposase, IS66 THIMO_RS14570 6154b6af5753c91c3f87928a6a9b13fe 230 PANTHER PTHR33678 3 157 1.1E-25 T 23-04-2016 THIMO_RS14570 6154b6af5753c91c3f87928a6a9b13fe 230 Pfam PF13817 IS66 C-terminal element 123 154 3.7E-10 T 23-04-2016 THIMO_RS15925 f149b4eac21aa6b28464e6ae410f3254 137 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 21 118 9.0E-16 T 23-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal THIMO_RS15925 f149b4eac21aa6b28464e6ae410f3254 137 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 17 129 4.1E-29 T 23-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal THIMO_RS07175 0111fe67cbff2a220b133012215d59a9 96 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 5 96 19.646 T 23-04-2016 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 THIMO_RS04735 53e960eb3f4a4d6c733050e8368b0bc2 275 SUPERFAMILY SSF53756 16 258 2.0E-7 T 23-04-2016 THIMO_RS04735 53e960eb3f4a4d6c733050e8368b0bc2 275 Pfam PF13524 Glycosyl transferases group 1 175 254 7.1E-20 T 23-04-2016 THIMO_RS04740 3b41714965385558a554e7f034599b6b 319 Gene3D G3DSA:3.40.50.300 4 54 3.6E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04740 3b41714965385558a554e7f034599b6b 319 Gene3D G3DSA:3.40.50.300 189 260 3.6E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04740 3b41714965385558a554e7f034599b6b 319 Gene3D G3DSA:3.40.50.300 92 150 3.6E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04740 3b41714965385558a554e7f034599b6b 319 SUPERFAMILY SSF52540 205 289 1.72E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04740 3b41714965385558a554e7f034599b6b 319 SUPERFAMILY SSF52540 82 159 1.72E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS04740 3b41714965385558a554e7f034599b6b 319 SUPERFAMILY SSF52540 7 41 1.72E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS09225 f978f7a1c482c4a95ad6c6bda3daacd5 318 Pfam PF05661 Protein of unknown function (DUF808) 4 302 4.2E-112 T 23-04-2016 IPR008526 Inner membrane protein YedI THIMO_RS09225 f978f7a1c482c4a95ad6c6bda3daacd5 318 PANTHER PTHR30503 2 314 2.1E-99 T 23-04-2016 THIMO_RS09225 f978f7a1c482c4a95ad6c6bda3daacd5 318 PIRSF PIRSF016660 1 313 1.4E-114 T 23-04-2016 IPR008526 Inner membrane protein YedI THIMO_RS14360 0e7bc6d6d40840021676cd57cfdd44d0 222 Pfam PF03703 Bacterial PH domain 98 185 9.0E-11 T 23-04-2016 IPR005182 Domain of unknown function DUF304 THIMO_RS14675 486b1f9865b82552b361230bcd1dded8 248 Pfam PF13448 Domain of unknown function (DUF4114) 130 208 9.5E-10 T 23-04-2016 IPR025193 Domain of unknown function DUF4114 THIMO_RS07895 3067506073c6a858c42f3640625a2593 109 Pfam PF11743 Protein of unknown function (DUF3301) 8 98 3.5E-27 T 23-04-2016 IPR021732 Protein of unknown function DUF3301 THIMO_RS07505 8851ad1aa933d202d987522017f1e614 928 Pfam PF03699 Uncharacterised protein family (UPF0182) 26 790 3.5E-244 T 23-04-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 THIMO_RS07505 8851ad1aa933d202d987522017f1e614 928 PANTHER PTHR39344 270 918 9.0E-245 T 23-04-2016 THIMO_RS07505 8851ad1aa933d202d987522017f1e614 928 PANTHER PTHR39344 1 253 9.0E-245 T 23-04-2016 THIMO_RS07505 8851ad1aa933d202d987522017f1e614 928 Hamap MF_01600 UPF0182 protein . 1 865 17.622 T 23-04-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 THIMO_RS15180 c54c925fba00b4cf7994e96fd28d018a 316 Pfam PF13242 HAD-hyrolase-like 209 286 6.2E-5 T 23-04-2016 THIMO_RS15180 c54c925fba00b4cf7994e96fd28d018a 316 Gene3D G3DSA:3.40.50.1000 37 289 1.2E-20 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS15180 c54c925fba00b4cf7994e96fd28d018a 316 SUPERFAMILY SSF56784 37 292 4.86E-20 T 23-04-2016 IPR023214 HAD-like domain THIMO_RS15180 c54c925fba00b4cf7994e96fd28d018a 316 PANTHER PTHR12725 20 294 9.1E-18 T 23-04-2016 THIMO_RS01455 011c6b7bed849adece5d7fcd16973d9e 65 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 1 44 3.1E-16 T 23-04-2016 IPR019239 Bacterial antitoxin of type II TA system, VapB THIMO_RS01715 041348b311cedb3aa1d3d478a1820364 519 PANTHER PTHR30365 1 312 1.4E-216 T 23-04-2016 THIMO_RS01715 041348b311cedb3aa1d3d478a1820364 519 PANTHER PTHR30365 380 509 1.4E-216 T 23-04-2016 THIMO_RS01715 041348b311cedb3aa1d3d478a1820364 519 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 505 2.3E-165 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 THIMO_RS01715 041348b311cedb3aa1d3d478a1820364 519 PANTHER PTHR30365:SF0 1 312 1.4E-216 T 23-04-2016 THIMO_RS01715 041348b311cedb3aa1d3d478a1820364 519 PANTHER PTHR30365:SF0 380 509 1.4E-216 T 23-04-2016 THIMO_RS11955 9a9aa47862021990da1ed877fc309513 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 93 216 1.9E-30 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 THIMO_RS11955 9a9aa47862021990da1ed877fc309513 252 PANTHER PTHR30625 19 249 3.6E-40 T 23-04-2016 THIMO_RS16755 069e89501e7a9114ec08b5127454f02b 168 SUPERFAMILY SSF50630 15 149 1.13E-42 T 23-04-2016 IPR021109 Aspartic peptidase domain THIMO_RS16755 069e89501e7a9114ec08b5127454f02b 168 Gene3D G3DSA:2.40.70.10 14 143 4.9E-39 T 23-04-2016 IPR021109 Aspartic peptidase domain THIMO_RS16755 069e89501e7a9114ec08b5127454f02b 168 PANTHER PTHR38037 5 162 1.4E-50 T 23-04-2016 THIMO_RS16755 069e89501e7a9114ec08b5127454f02b 168 Pfam PF05618 Putative ATP-dependant zinc protease 15 151 9.2E-36 T 23-04-2016 THIMO_RS10725 ff6f3adcd2bfe65568f1518bac3d4bfc 265 Pfam PF09955 Predicted integral membrane protein (DUF2189) 70 194 1.3E-35 T 23-04-2016 IPR018692 Predicted integral membrane protein DUF2189 THIMO_RS04445 95dafa9940347efca73662c001d4c4f4 253 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 15 164 1.1E-14 T 23-04-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase THIMO_RS01945 eef350ad6596995fe2c5507de6b42399 1244 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1185 1243 2.1E-5 T 23-04-2016 IPR007452 Translocation and assembly module TamB THIMO_RS01945 eef350ad6596995fe2c5507de6b42399 1244 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 943 1182 9.5E-34 T 23-04-2016 IPR007452 Translocation and assembly module TamB THIMO_RS01945 eef350ad6596995fe2c5507de6b42399 1244 PANTHER PTHR36985 1 1244 2.2E-139 T 23-04-2016 THIMO_RS11875 1b3ab857274a4cb6a4e594f380ed3b48 359 PIRSF PIRSF029693 13 359 1.0E-128 T 23-04-2016 IPR016936 Uncharacterised conserved protein UCP029693 THIMO_RS11875 1b3ab857274a4cb6a4e594f380ed3b48 359 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 27 359 7.4E-160 T 23-04-2016 IPR016936 Uncharacterised conserved protein UCP029693 THIMO_RS01645 e7e5f96b272b898681f53caff1562f32 130 Pfam PF11042 Protein of unknown function (DUF2750) 22 123 1.1E-31 T 23-04-2016 IPR021284 Protein of unknown function DUF2750 THIMO_RS00235 5411a24ac72591bbd08335d2ce06ac0b 201 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 80 196 4.9E-23 T 23-04-2016 IPR007690 Type II secretion system, protein M GO:0006858 THIMO_RS12815 39e37e43809eb4daab6b4ade26c080bf 331 SUPERFAMILY SSF56726 186 308 7.98E-7 T 23-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 THIMO_RS12815 39e37e43809eb4daab6b4ade26c080bf 331 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 186 263 1.3E-8 T 23-04-2016 IPR024534 Domain of unknown function DUF2220 THIMO_RS18450 f402e160c76a0dfac49b428f9e39dcb1 239 Pfam PF12275 Protein of unknown function (DUF3616) 28 229 1.9E-68 T 23-04-2016 IPR022060 Protein of unknown function DUF3616 THIMO_RS16230 7c0adb922545adc20e239f1668cf2174 141 Pfam PF01850 PIN domain 5 123 1.5E-13 T 23-04-2016 IPR002716 PIN domain THIMO_RS16230 7c0adb922545adc20e239f1668cf2174 141 Gene3D G3DSA:3.40.50.1010 4 123 4.3E-11 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS16230 7c0adb922545adc20e239f1668cf2174 141 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 5 137 9.987 T 23-04-2016 IPR022907 VapC family GO:0004540 THIMO_RS16230 7c0adb922545adc20e239f1668cf2174 141 SUPERFAMILY SSF88723 1 126 1.01E-21 T 23-04-2016 IPR029060 PIN domain-like THIMO_RS00130 613341460e78bb9b35c05fdcfaee544f 482 Pfam PF13440 Polysaccharide biosynthesis protein 42 335 4.4E-28 T 23-04-2016 THIMO_RS18035 24aed24674b93d605ae6e89c9e9d0613 402 PANTHER PTHR37533 274 402 5.3E-25 T 23-04-2016 THIMO_RS18035 24aed24674b93d605ae6e89c9e9d0613 402 Pfam PF02120 Flagellar hook-length control protein FliK 280 361 1.7E-20 T 23-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal THIMO_RS18035 24aed24674b93d605ae6e89c9e9d0613 402 PANTHER PTHR37533:SF2 274 402 5.3E-25 T 23-04-2016 THIMO_RS05465 6f07249005c85eb9d669469f4ec5d60d 397 Pfam PF01389 OmpA-like transmembrane domain 297 364 3.3E-4 T 23-04-2016 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 THIMO_RS05465 6f07249005c85eb9d669469f4ec5d60d 397 Gene3D G3DSA:2.40.160.10 57 366 1.3E-9 T 23-04-2016 IPR023614 Porin domain THIMO_RS05465 6f07249005c85eb9d669469f4ec5d60d 397 SUPERFAMILY SSF56935 30 397 4.03E-24 T 23-04-2016 THIMO_RS09385 8950e0a015b21a2741b358f8bebaff16 178 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 178 1.0E-60 T 23-04-2016 IPR018636 Protein of unknown function DUF2058 THIMO_RS18370 0ec9723027987026943307b9a0fdd919 247 Pfam PF14358 Domain of unknown function (DUF4405) 11 59 1.5E-6 T 23-04-2016 IPR025517 Domain of unknown function DUF4405 THIMO_RS00125 6d98377a68c03e3f0655e62d0fd50166 316 SUPERFAMILY SSF52540 38 85 1.1E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00125 6d98377a68c03e3f0655e62d0fd50166 316 SUPERFAMILY SSF52540 146 275 1.1E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS00125 6d98377a68c03e3f0655e62d0fd50166 316 Pfam PF13469 Sulfotransferase family 42 269 2.9E-12 T 23-04-2016 THIMO_RS18005 0f554291bde36da610bc0cf942b449d2 532 SUPERFAMILY SSF48452 395 498 2.53E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS18005 0f554291bde36da610bc0cf942b449d2 532 Gene3D G3DSA:1.25.40.10 304 382 6.2E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS18005 0f554291bde36da610bc0cf942b449d2 532 Gene3D G3DSA:1.25.40.10 432 491 6.2E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 THIMO_RS05910 6130aacf165df1ccb9fb4884f1a67abe 170 Pfam PF13487 HD domain 76 96 6.6E-7 T 23-04-2016 THIMO_RS05910 6130aacf165df1ccb9fb4884f1a67abe 170 SUPERFAMILY SSF109604 34 144 3.56E-11 T 23-04-2016 THIMO_RS01915 8f06e7f27ff9d813797b38bb473a6a8b 84 Pfam PF07704 Rv0623-like transcription factor 2 83 6.9E-29 T 23-04-2016 IPR011660 Rv0623-like transcription factor THIMO_RS06430 cfff9ee30fb76cb7a3ab36687793d48f 172 Pfam PF05751 FixH 19 158 2.5E-26 T 23-04-2016 IPR008620 Nitrogen fixation protein FixH THIMO_RS03785 0075a49466238e75a1ce2ef3709bc3b1 379 SUPERFAMILY SSF69279 65 197 1.25E-5 T 23-04-2016 THIMO_RS11680 b43701fa69aed1358a1f371601195d0f 169 Pfam PF03729 Short repeat of unknown function (DUF308) 4 73 1.0E-6 T 23-04-2016 IPR005325 Protein of unknown function DUF308, membrane THIMO_RS11470 f05e3d7251802775a1576e8c4199aa97 199 Pfam PF14279 HNH endonuclease 99 153 9.5E-14 T 23-04-2016 IPR029471 HNH endonuclease 5 THIMO_RS11470 f05e3d7251802775a1576e8c4199aa97 199 PANTHER PTHR33877 84 187 1.1E-28 T 23-04-2016 THIMO_RS11470 f05e3d7251802775a1576e8c4199aa97 199 SMART SM00507 86 139 2.9E-12 T 23-04-2016 IPR003615 HNH nuclease THIMO_RS18380 09f4a36bd0be1b24d388dd11a8630cc8 64 PANTHER PTHR30349 4 63 5.5E-19 T 23-04-2016 THIMO_RS18380 09f4a36bd0be1b24d388dd11a8630cc8 64 Gene3D G3DSA:1.10.443.10 14 62 6.8E-7 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 THIMO_RS18380 09f4a36bd0be1b24d388dd11a8630cc8 64 PANTHER PTHR30349:SF28 4 63 5.5E-19 T 23-04-2016 THIMO_RS18380 09f4a36bd0be1b24d388dd11a8630cc8 64 SUPERFAMILY SSF56349 3 61 5.0E-8 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 THIMO_RS14025 cc1d6e1e8a954ad1ab2a1b55c7eda8ae 614 Pfam PF12288 Carboxysome shell peptide mid-region 3 426 8.4E-173 T 23-04-2016 IPR020990 Carboxysome shell protein THIMO_RS07135 f0b726994337211f04a95915a3b17a40 118 SUPERFAMILY SSF159468 14 101 1.1E-9 T 23-04-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 THIMO_RS12975 599f74cc48efc35f0460e10d32e74bfc 765 Pfam PF14072 DNA-sulfur modification-associated 67 302 5.6E-10 T 23-04-2016 IPR017642 DNA sulphur modification protein DndB THIMO_RS16960 cc356cecbfd691489334a51be6b98993 143 Pfam PF13471 Transglutaminase-like superfamily 33 141 2.2E-26 T 23-04-2016 IPR032708 Microcin J25-processing protein McjB, C-terminal THIMO_RS12040 b4bc234910d277c061b34b5f341aafe7 218 Pfam PF08856 Protein of unknown function (DUF1826) 21 217 7.3E-62 T 23-04-2016 IPR014955 Protein of unknown function DUF1826 THIMO_RS01670 77a7d3f7622c768a890173ef2d3c97d2 59 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 56 2.3E-11 T 23-04-2016 IPR027379 Cardiolipin synthase N-terminal THIMO_RS03565 e9f764df38516e9e6d1eb12d4f155b3a 348 Pfam PF13511 Domain of unknown function (DUF4124) 26 88 1.3E-12 T 23-04-2016 IPR025392 Domain of unknown function DUF4124 THIMO_RS16570 b916f2dab7432ee72acab7f1fe085fe3 713 Pfam PF11739 Dicarboxylate transport 514 706 6.2E-34 T 23-04-2016 IPR021730 Dicarboxylate transport THIMO_RS10515 2967978663c119b956c9a3dacac22136 85 SUPERFAMILY SSF143011 1 82 6.41E-18 T 23-04-2016 THIMO_RS10515 2967978663c119b956c9a3dacac22136 85 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 81 5.5E-8 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family THIMO_RS04730 5ac473536f3de070e6fc628e789e01ac 308 SUPERFAMILY SSF53756 20 299 1.26E-6 T 23-04-2016 THIMO_RS07290 8334478018e78ecaad78c8b84c002d8e 43 Pfam PF08085 Entericidin EcnA/B family 19 39 3.0E-9 T 23-04-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 THIMO_RS09670 db27eb7b5f09537a217d1321895748a9 524 SUPERFAMILY SSF47090 38 105 5.96E-6 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS09670 db27eb7b5f09537a217d1321895748a9 524 Gene3D G3DSA:1.10.101.10 39 104 3.5E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like THIMO_RS09510 de77065a5bca1d79f9ad9e317ccdb9dd 91 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 6 85 3.1E-7 T 23-04-2016 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system THIMO_RS04280 c4909a4387c213fde30fbb36d413cd01 388 Pfam PF04326 Putative DNA-binding domain 24 147 2.5E-13 T 23-04-2016 IPR007421 Schlafen, AAA domain GO:0005524 THIMO_RS11765 67fcf245dac16ad57f708eb2366db313 66 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 2.7E-16 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 THIMO_RS18345 118e71b1ae6fbc1bc6a7573db1a6ebe2 338 Pfam PF08378 Nuclease-related domain 18 124 1.3E-23 T 23-04-2016 IPR011528 Nuclease-related domain, NERD THIMO_RS10150 14073f173fdeb4e8b5f45dc353cc324b 258 Pfam PF09955 Predicted integral membrane protein (DUF2189) 73 193 7.1E-27 T 23-04-2016 IPR018692 Predicted integral membrane protein DUF2189 THIMO_RS01470 545771a1957a234438be680cfa3a1c2e 315 Pfam PF10040 Uncharacterized conserved protein (DUF2276) 187 308 1.3E-10 T 23-04-2016 IPR019267 CRISPR-associated protein Cas6, C-terminal THIMO_RS07525 2f3869e1190c660aaf274aa856c09ed3 286 SUPERFAMILY SSF52540 14 47 5.45E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07525 2f3869e1190c660aaf274aa856c09ed3 286 SUPERFAMILY SSF52540 117 193 5.45E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07525 2f3869e1190c660aaf274aa856c09ed3 286 Gene3D G3DSA:3.40.50.300 13 67 1.0E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS07525 2f3869e1190c660aaf274aa856c09ed3 286 Gene3D G3DSA:3.40.50.300 120 209 1.0E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS03805 5ece68299f8943d7112648e020a5f887 882 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 563 836 6.3E-67 T 23-04-2016 IPR011749 Conserved hypothetical protein CHP02243 THIMO_RS03805 5ece68299f8943d7112648e020a5f887 882 Pfam PF04865 Baseplate J-like protein 632 785 4.0E-10 T 23-04-2016 IPR006949 Baseplate protein J-like THIMO_RS14170 59d90f3799a59988ef8cf41dc44b0f7b 188 Pfam PF07298 NnrU protein 4 182 2.1E-48 T 23-04-2016 IPR009915 NnrU domain THIMO_RS16680 39f226d1f4edaad09567a47219606a1a 180 Gene3D G3DSA:3.30.870.10 33 110 8.5E-4 T 23-04-2016 THIMO_RS08420 a26665120c986cc3a4ba6b8295c2becd 183 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 71 180 8.8E-15 T 23-04-2016 IPR007690 Type II secretion system, protein M GO:0006858 THIMO_RS05850 6fca5b3472f3af665d97e33c0d24443e 105 Pfam PF02656 Domain of unknown function (DUF202) 34 98 4.5E-17 T 23-04-2016 IPR003807 Domain of unknown function DUF202 THIMO_RS00795 61d290c26106d40201f6b8c86f56f630 66 Pfam PF14255 Cysteine-rich CPXCG 10 54 4.4E-20 T 23-04-2016 IPR025990 Cysteine-rich CPXCG protein THIMO_RS10250 1ea45430569e342748febd107ac727f1 156 Pfam PF03703 Bacterial PH domain 78 148 3.1E-15 T 23-04-2016 IPR005182 Domain of unknown function DUF304 THIMO_RS12800 68a649178dd13188a679589d46b005c2 317 SUPERFAMILY SSF64182 5 315 1.28E-38 T 23-04-2016 THIMO_RS16990 098a6e49f08d0f3acb8f8b690f5aaca3 333 SUPERFAMILY SSF52540 84 289 3.56E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase THIMO_RS15440 6abb66fa4aee82cea3b2935066c79d1d 285 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 27 281 2.1E-104 T 23-04-2016 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase THIMO_RS10575 97a2a375fd18f1788d59b5e05e1ca3d6 592 Pfam PF07556 Protein of unknown function (DUF1538) 76 298 1.0E-54 T 23-04-2016 IPR011435 Protein of unknown function DUF1538 THIMO_RS10575 97a2a375fd18f1788d59b5e05e1ca3d6 592 Pfam PF07556 Protein of unknown function (DUF1538) 345 566 1.0E-62 T 23-04-2016 IPR011435 Protein of unknown function DUF1538 THIMO_RS01810 69e3789fea2cfc384e79d906a1722321 304 Pfam PF01925 Sulfite exporter TauE/SafE 62 296 5.3E-32 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 THIMO_RS05835 de2c6509a8b877df5ed34187d2827e33 265 SUPERFAMILY SSF103501 66 212 9.68E-6 T 23-04-2016 IPR023234 NarG-like domain THIMO_RS09295 1bcf9c385c9b4cbdf25b025295196292 293 Pfam PF02517 CAAX protease self-immunity 120 237 5.9E-12 T 23-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 THIMO_RS12390 d1c9a0e6c9c64c954e5153c233beff94 308 Pfam PF13557 Putative MetA-pathway of phenol degradation 73 304 1.7E-65 T 23-04-2016 IPR025737 MetA-pathway of phenol degradation, putative THIMO_RS02120 f75e77be313b0ee59c4e15aa1b7d1d05 213 Pfam PF06532 Protein of unknown function (DUF1109) 10 213 9.3E-67 T 23-04-2016 IPR009495 Protein of unknown function DUF1109 THIMO_RS16220 a345de3254b4ded75866af26c6c384ba 64 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 12 45 5.7E-6 T 23-04-2016 IPR019239 Bacterial antitoxin of type II TA system, VapB