COW1_RS00025 6122 .. 6142 + -11.8 -3.55524 GAACTGGAGTGAACA GGCCGGGG ATTCG TCCCGGCC TTGATTTCGGTCATT 77 29 raiA NONE COW1_RS00035 NONE xerD NONE COW1_RS00050 12321 .. 12349 + -10.9 -3.02511 GCTGTTCGCGCGCCT GCAGGTTGGCGCC GTC GTCGGCGACCTGC TGTTCGAGCGCTGAG 62 455 COW1_RS00120 34602 .. 34617 + -2.6 -5.19212 CGAAACGAGCACTCA TC-GCAT GAC ATGCCGA TTTTTTCATGGTCCT 80 282 COW1_RS00135 36977 .. 37009 + -9.9 -3.14132 GCCCCGAGTACGAAT GTCGCCAGGGTGAC TTGGAT GTC-CCGTGGCGAC TTCATGAGGGCCGGG 64 13 COW1_RS00140 38026 .. 38051 + -16.9 -3.1372 GTCGGTCGAGAATGG CGTCGGCGAGG GTGG CCTCGCCGATG TATTCGTGCCAGCTC 84 507 COW1_RS00165 41402 .. 41420 + -3 -3.04894 CTAGCCCTGCGATAC CCGGCC CTGTACA GGCCAG ATTTTCCACACACTT 43 59 COW1_RS00170 NONE COW1_RS00175 NONE COW1_RS00180 NONE COW1_RS00185 NONE COW1_RS00190 NONE COW1_RS00195 NONE COW1_RS00200 NONE COW1_RS00205 NONE COW1_RS00210 NONE COW1_RS00215 NONE COW1_RS00220 NONE COW1_RS00225 58259 .. 58282 + -10.2 -2.87931 GGTAGCGTCCAACCC CGCCTCGCGC AGGC GTGCGAGGCC TATCTCAAGGATGGC 59 302 COW1_RS00260 64596 .. 64607 + -7.2 -3.24924 AATACGCTTCTTCTT GCCG GTAT CGGC TCTTCTCGCTGCCGC 56 338 COW1_RS00290 NONE COW1_RS00295 75542 .. 75556 + -7.8 -3.82083 TGGTCGATTTTCGGG CTGGTG GCG CACCGG TTTCGGTTGTGGTCG 68 94 COW1_RS00300 NONE COW1_RS00305 NONE COW1_RS00310 79433 .. 79443 + -8.2 -3.53012 TATCGTAAACCAACG GCCC AGA GGGC TTTGCGCAGCACCAG 62 468 COW1_RS00320 NONE COW1_RS00325 81807 .. 81841 + -2.1 -4.20516 GGTTATGGTGCTGCT TGG-TAGGTCGCGCCG AAGA TGGTGTCGCCTAACCA TTTCTTGAATGACGG 59 68 COW1_RS00365 92190 .. 92205 + -4.6 -3.55761 GCGACGATTGATGTG GTCGGC AATG GCCTAC TTTGGCCGCTACCTC 53 30 COW1_RS00470 112046 .. 112077 + -4.5 -2.84059 CCACACAAAAAATGT GTAATTTCACACA TATGAC TGTGTGATATAAC TGATTGATATATATG 44 105 COW1_RS00475 NONE COW1_RS00480 NONE COW1_RS00485 116983 .. 116999 + -5.1 -4.48987 GCAGGACCTTTATGG CGGGT ATCCGTC ACCCG TTTTGATTGTGAAGA 70 3 COW1_RS00490 NONE COW1_RS00495 NONE COW1_RS00500 NONE COW1_RS00505 120915 .. 120926 + -2.2 -3.13522 GACATTTTTTTGGTC GGTT GTTG AGCC TGTTCATGACGCGCT 42 143 COW1_RS00515 123394 .. 123404 + -6.8 -3.08173 AACATGCAGTGACAG GCCA GTA TGGC TTGGATCAGGTTACT 54 473 COW1_RS00655 NONE COW1_RS00660 NONE COW1_RS00665 149191 .. 149201 + -6.8 -3.56092 GCGTGGGCCTCGATC GGCA TTT TGCC TTTCGGCCGTCGTCG 58 467 COW1_RS00695 153682 .. 153708 + -8.7 -3.28712 AGCGTAACCTGACAC CCCGGCG-GTGC TGCC GCACATGTCGGG TTATGCCCACCGGGC 63 173 COW1_RS00700 NONE thpR 154826 .. 154854 + -8.7 -2.62616 GGGGGGATTGTAGGA TGGGTGCAGGCGC GGA GCGCCGTAACCCA TCGTCTGGCCGCTCC 57 71 recA 156317 .. 156346 + -15.1 -3.85698 AGATTTCGCGTAACG GATATTGCCCGGC TTCG GCCGGGTAATGTC TTTATGGGAACCGGA 100 165 COW1_RS00715 156932 .. 156964 + -4.8 -2.91264 ACATTACCCGTCATC CCGGTGCAGGCCG GGATCCAG TGGCC-GCAGCGG TATCTGGATCCCGGC 46 103 alaS 159756 .. 159780 + -4.2 -4.70107 GGTTAGAGATTGCCG CGTCACTTCG TTCCT CGCAATGACG TTTATTGTTTTCATG 70 95 COW1_RS00725 161287 .. 161297 + -2.4 -4.26461 ATGTTGGCGCAGGCG GCCG TAC CGGG TTCTTTTGAGTTGCT 62 190 csrA 161584 .. 161596 + -10.5 -2.79679 CATACTTTACCTCGA CCGGC CGC GCCGG TATCCTACGCATCTT 63 67 COW1_RS00735 161720 .. 161737 + -14.1 -4.96848 TCCGCCATATAAAAA GGGCCCC AACC GGGGCCC TTTTTATATGGCGGA 100 34 COW1_RS00750 163954 .. 163973 + -3.4 -3.25223 TGGAGTCAGGAGCCT GGGTGGCG GCGC CGGCGTCC TTCGTCCTGTCGCTG 46 104 COW1_RS00760 166491 .. 166503 + -3.3 -3.02144 TTTTGTGACGGAGAG CGGCG ATT TGCTG TCTTCCGCGCCATCC 43 189 COW1_RS00765 NONE COW1_RS00770 169400 .. 169438 + -22.4 -4.8048 GCCACCCGCAAGGGA GTGTCGGGCGGGGCCGTG CAA CGCGGCTTCGCCCGGCGC TTTTTCATGTGCACC 100 67 COW1_RS00775 NONE COW1_RS00780 NONE COW1_RS00785 NONE COW1_RS00790 NONE COW1_RS00795 NONE COW1_RS00800 185608 .. 185630 + -4.8 -3.30124 CGGTGATGGCCACCG GGTCGAGG TCGAAAC CCTCCACC TTCTCCAGCGTACGG 49 116 COW1_RS00820 NONE COW1_RS00825 189102 .. 189124 + -13.4 -4.90266 CACCGAAAGTCGAAA GGCCGCCC CTAACCC GGGCGGCC TTTTTCGTTCATGGA 100 136 COW1_RS00830 190250 .. 190279 + -9.3 -3.3197 ATTTCCTCCTGTGAG GGTAGCTCGCC ACCCATCC GGCGACCTACC TTCTCAAGCTGCTCT 61 73 COW1_RS00880 NONE COW1_RS00885 204747 .. 204765 + -2.3 -3.30243 CATTGCTTGCTGTTC CG-GGCGC CTGA GCGCGACG TTATCCGAAATGGGT 44 158 COW1_RS00890 206933 .. 206962 + -6.5 -4.06419 TGCCCCAACGCACTG CGTCGAATATGCT TGAC AGTATGTTGGACG TTCTTTCTGAACCAG 66 319 COW1_RS00895 NONE COW1_RS00900 208669 .. 208690 + -4.3 -3.37487 ATAGCTGGGGCTGGT GATCCCCTC GTCG GTGGCGATC TCTTTGACGCTGTCG 51 393 COW1_RS00925 NONE COW1_RS00930 213718 .. 213739 + -11.5 -2.53382 CGCCTCGATCAAAGG CCCAGGACG AAAT CGTCCGGGG TAGGTTAGGCATGGT 61 465 COW1_RS00945 NONE COW1_RS00950 NONE COW1_RS00955 NONE COW1_RS00960 NONE COW1_RS00965 NONE COW1_RS00970 NONE COW1_RS00975 219638 .. 219651 + -2.3 -3.28712 TGCGTGATCTCACGC CGGAA GACG TACCG TTCTGAGGGGGCGCG 44 6 COW1_RS00980 NONE COW1_RS00985 222683 .. 222729 + -4.5 -3.57263 CAATCTGCAAACTGC CTGCAAACTGGAATCGAGGC AAAACAAG GCTTTGCG-CCAGTTTGCAG TTTGCAGGTCCCAGT 53 105 COW1_RS00990 NONE COW1_RS00995 NONE COW1_RS01000 224099 .. 224133 + -7.9 -3.87815 CGCGAGAGAAGTCTA TG-TGAAGGCTGCGGA TAGT TCCGTGGCCTTCGGCG TTTCTGGGCCTCCCA 68 151 COW1_RS01005 226045 .. 226081 + -8.7 -3.30507 CCTATCGGGGTTCAT TCGGCGTATTCGTCTTC ACC GAAGGCGAAGGCGGTGA TCTCTTTGAGTTGCT 63 482 COW1_RS01025 227088 .. 227113 + -2.4 -3.07962 AGCTCGGTGACGTGG CGCCGCGGGT GGATTG ACATGCGCCG TGTTCGAGTATGACG 41 9 COW1_RS01030 NONE COW1_RS01035 NONE COW1_RS01040 NONE COW1_RS01045 NONE COW1_RS01050 NONE COW1_RS01055 NONE COW1_RS01060 NONE COW1_RS01065 NONE COW1_RS01070 NONE COW1_RS01075 NONE COW1_RS01080 NONE COW1_RS01085 NONE COW1_RS01090 NONE COW1_RS01095 NONE COW1_RS01100 NONE COW1_RS01105 NONE COW1_RS01110 241961 .. 241982 + -2.1 -3.79747 GGTCGCCTCGGCGAA GACCGGCAG TGCG TTGGCGGCC TTTGGTGGTGACTGG 53 214 COW1_RS01115 NONE COW1_RS01120 244243 .. 244253 + -8.2 -2.63596 GAAGAACCCGTTCAC CGGC GAT GCCG TGGTGTGAGGTAGCG 53 7 COW1_RS01125 NONE COW1_RS01130 NONE COW1_RS01135 NONE COW1_RS01140 247279 .. 247300 + -15.9 -3.51232 CTCTCATTATCACCC GAACCCGCC ATAC GGCGGGTTC TTCGTTTCCGGAGGA 90 50 COW1_RS01145 NONE COW1_RS01150 NONE COW1_RS01155 248601 .. 248615 + -2.2 -2.98223 TGCATATAAAACATA TAATGT GCT ATATTA TGTATAATATGCATC 40 45 COW1_RS01160 NONE COW1_RS01165 249850 .. 249875 + -4.7 -3.2794 ATAGCCAATAGAGGG GTTGATTCTTG CTGC CGCGGATCAAC TTCATCTCGGTCGAC 49 132 COW1_RS01230 274947 .. 274993 + -6.9 -3.57462 ATAAGCCGCTCGATT CAGCCTTATTACGCAACTTTATC CAT GA-AAAGTTGCATAATAAG-CGG TTTCCGCCTAGGCTA 60 113 COW1_RS01235 NONE COW1_RS01240 NONE COW1_RS01245 278202 .. 278220 + -2.3 -2.87132 AGTTCGAGCAGAAGA CTACCGG ACGGC TCGGGAG TGTCTAGGGAACCCG 40 0 COW1_RS01250 278428 .. 278441 + -4.5 -2.70932 TGCACTTTGAGCCTG CTCAG TGAC CTGGG TCCTTGGGAGGGCGG 44 18 COW1_RS01255 279661 .. 279686 + -9.8 -3.56594 CGGGGTTTTCTGGGG CCACTCCATT CCGCAA AATGGGGTGG TTTCAACGCATTTCG 69 54 COW1_RS01275 286103 .. 286113 + -6.8 -3.52906 GGCGGCCGGTATCCG CCAG CAG CTGG TATTTCTCCACATAA 58 370 COW1_RS01285 287975 .. 287995 + -5.5 -3.92869 AATTTCGCTGCTGAA TTCCATC GAGACAG GATGGAA TTTATCCATCAGTCA 61 189 COW1_RS01290 NONE COW1_RS01295 292313 .. 292352 + -10 -2.74144 AGGTCGGGTTAGCGC AGCGTAACCCGACAGCGCC GCG GAAG-TGTCGGGTTACGCC CTTTCGGGCTAACCC 63 51 COW1_RS01320 298762 .. 298780 + -7.3 -3.39288 GAGGAAGCGGGTCTC CCCGCCC GTTGA GGGAGGG TGTTATTGGACGGTA 58 119 COW1_RS01325 300042 .. 300052 + -6.8 -3.69283 TGTTGATGTCGGCCA CCAG CAG CTGG TTGTTCAGTCCCTTC 61 359 COW1_RS01350 305875 .. 305886 + -2.2 -3.31461 CTCCTGGCAATACCG GTCA ATGG TGGC TTGTGCCGGTCCCTC 44 104 ffs 306172 .. 306187 + -8.2 -3.72765 TTACGTAACGGCCAT TCGGGG CTGT CCCCGG TTTGCGGTTTGAGTT 66 211 dnaX 307839 .. 307849 + -3.2 -3.07192 CGCATAACCCATGAA CTCA CTC TGGG TGTATTCGGAAACTT 43 42 COW1_RS01365 308182 .. 308197 + -4.6 -3.29511 CATGGGGCTTCCGCC CGGCTT CAAG ATGCCG TTCTGAAGCGCTGAC 49 4 recR NONE COW1_RS01375 309530 .. 309540 + -6.8 -3.4072 GACTCTGCGTCTTTG CGCA CTC TGCG TTATCCTCACCACTG 58 330 COW1_RS01380 310073 .. 310097 + -7.1 -3.14931 GCATTCGCTGCATTT GCCGACCTG GTACACG CAGGTCGGG TTAGTACAGCGTAAC 54 156 orn 314283 .. 314303 + -6.2 -2.52464 CTTGGCCCGGCACTT CTCGATCGC CATG GCGATC-AG TGCCTTCACCGCCGG 45 486 gdhA 318125 .. 318140 + -4.6 -2.86743 TCAAGGTGGCCGATG CCATGC TGGC GCAAGG TGTGGTATAGCCTTT 46 0 ppsR 319362 .. 319395 + -6.7 -3.58522 TCGGGCAGGCGCTGC CTGAGGGCCTGCATCA GGG TG-TGCGCGCCCTCAC TTTCCACATCCTCGT 58 391 COW1_RS01430 321330 .. 321346 + -5 -4.2008 CGGTCCGCTCCGCTA GCCGCG CGCCT CGCGAC TTTATTCCACTCTGT 64 25 COW1_RS01435 322103 .. 322116 + -5.9 -4.62069 GGTTACCGCCTTCAG TCCGC ATTG GCGGG TTTTTCCCATACCAG 75 141 COW1_RS01455 NONE COW1_RS01460 327802 .. 327816 + -10 -3.97057 AGCTGTATATTTTCT GGAGGT TTT ACCTCC TTTCGTTGAGTTGTC 80 129 COW1_RS01465 331150 .. 331197 + -4.3 -3.55447 GCTGTTCCAGCAGTT CGGGCAGGACCAGGCGCAGTGGC AGGCCG GCCGCTG--CCTGGT-C-GTCCG TTATGTGGTGGATGC 52 441 COW1_RS01490 336355 .. 336373 + -5.9 -3.17392 AGAGCCGACGTTGAC GCGCGAT CCCCA ACCGCGC TTAAATTGCGCGCTC 51 69 COW1_RS01495 NONE COW1_RS01500 338253 .. 338263 + -8.2 -3.09933 GGAAGCGGACTGATT CCGC TGT GCGG TTCGCTGCATTCCCG 57 28 COW1_RS01505 339114 .. 339138 + -4.1 -4.35483 TGCGCGCTAGCCGAC AGCGGACCG TGCAATC CGGCCCGCA TTTGTTATAGTCAAC 65 31 COW1_RS01510 NONE COW1_RS01515 NONE COW1_RS01520 NONE COW1_RS01525 343050 .. 343062 + -5.5 -2.75343 AATAATAATTACTTT GCGTT CTT AGCGC CTTTACGCCTCTGCG 47 139 COW1_RS01530 343590 .. 343623 + -10.1 -3.97368 TACCACTTACGTCAT CCC-CGCGCAGGCGGG GAT CCAGCCACCGCGAGGG TTTGTGGATTCCCGC 80 112 mltF NONE COW1_RS01540 346050 .. 346064 + -2.1 -3.56273 GTGTAACGGACAGAC GG-GGA CCGT TCCGCC TTCTATACTCATGCA 47 42 COW1_RS01545 NONE COW1_RS01550 NONE COW1_RS01555 NONE COW1_RS01560 350608 .. 350629 + -11.5 -2.82516 TGGAAGAACAGCACG TCGCCCGGC TCCA GCAGGGCGA TCTGCTGCTGCGCGA 63 258 COW1_RS01575 NONE rnhA 354400 .. 354415 + -4 -3.94438 GGACGCAAAGGCGCA GAGGTT CTGA AACTTC TATTTTCTTCGCGTC 57 67 dnaQ 355298 .. 355311 + -9.5 -3.51924 GCGACGGGCCGATAC CCGGC GGGA GCCGG TTGTGTCGGTCGAGA 69 68 tviB 356666 .. 356715 + -5.7 -2.89191 GCAGAGTCGCACAGA CGCAGAGGATGCAAGGC-TTTTTG TAG TAATGATGCTTTGCGTCCCCCGCG TCTCTGCGACTCTGC 48 52 COW1_RS01595 NONE COW1_RS01600 358352 .. 358370 + -10.2 -3.29511 CCAGACTATAAGGAA GCCGCCTC CGG GAAGCGGC TTGTACCGAGGTGAC 68 93 COW1_RS01605 359832 .. 359860 + -4.4 -3.87323 GGGGCCCACTGAAGC CCCGG-CGCTGTC AATC GGCCGCGGCCCGG TTGTGTTTCCTCATC 59 29 COW1_RS01610 NONE prsK NONE prsR NONE prsT 366271 .. 366281 + -2.4 -3.64259 GCAGACTGACAACCC CCCG ACA CGGA TTATTCCAGATGATT 51 32 prsT 369002 .. 369043 + -5.6 -3.34398 CGGCGATTGCGGCCA GCGCCGGACGCAGCCGCG CCTGCT CGGTGCTGCGTGCCGCAC TCTTTACCGCCAGCA 51 151 COW1_RS01650 374373 .. 374414 + -26.1 -4.18058 CAGCGCGGCCGGTTG ACAGATTCCCGGTGTCAGC CTTG GCTGACACCGGGAATCTGA TTTTCCCCTATACTT 100 25 COW1_RS01655 NONE COW1_RS01660 NONE COW1_RS01665 NONE COW1_RS01670 NONE COW1_RS01675 NONE wecB 381559 .. 381573 + -2.7 -3.77464 GGCACGACCGACGGG AGGCC GCCAG GGCCG TTTCATGAGTACTGT 51 3 COW1_RS01685 NONE COW1_RS01690 NONE COW1_RS01695 NONE xrtA NONE COW1_RS01705 NONE COW1_RS01710 NONE COW1_RS01715 NONE COW1_RS01720 NONE COW1_RS01725 392643 .. 392679 + -2.1 -2.62616 ACTGCTGCCGGCTGC GCCCGG-GGAGGCGGC ATGAGC GGCGTCTACACCCGGC TGGTCTCCGGCCTGC 38 7 COW1_RS01730 NONE COW1_RS01735 395659 .. 395693 + -5.7 -2.65815 GCGTGAGAGCATCTC GCGGTAGGCGGTGC-CG GCC CGTGCATCGTC-GCTGC TGATGTGGGTATGCA 44 333 COW1_RS01750 NONE COW1_RS01755 400368 .. 400385 + -11.3 -2.52543 ACTCGAGGCTCGTCA TTCCGGC GCAG GCCGGAA TCCATTGACCACAGT 65 113 COW1_RS01795 406939 .. 406956 + -14.1 -2.84732 GATCCTGAATCCGCG GCGGCCC GTCC GGGCCGC TGTCATCCCTTTCCG 80 39 COW1_RS01820 416158 .. 416181 + -7.4 -3.25823 ATATCCGGGATGACT GCCGC-TGTCC TGC GGACACGGGGC TTCGTGTCGGACCAC 56 134 COW1_RS01825 NONE COW1_RS01830 417258 .. 417315 + -10.7 -2.87132 AGCAGGTCGAGCCTT GA-CCCTGG-CC-GCCATC-GCCCCGG-GG CGG CTGCCGGGGCAGCTGGCCGGTCCGGGGATC TGTGTCAGAACCGGC 64 24 COW1_RS01835 418157 .. 418193 + -2.9 -2.74012 GGTTCGACCGCCTGA GCGGGGGC-G-CCCATG CCTGA CACCGGCCTGCCCCTGC TGGTTCGGGTGCTGC 41 6 COW1_RS01840 419304 .. 419331 + -9.8 -2.62396 GTGCGGTGTGTAGGA TGGGTGAAGGCG CGTG CGCCGTAACCCA TCGTCTCCAGCGGTG 60 84 COW1_RS01850 NONE COW1_RS01855 421945 .. 421955 + -8.2 -4.386 CTCCGGGCATTCAAC GCGC TGC GCGC TTTTGTCCCGCCTTC 77 220 COW1_RS01880 NONE COW1_RS01885 NONE COW1_RS01890 427368 .. 427382 + -2.8 -2.62184 CCCCGCGCAGGCGGA GATCCA GTG TGTATC TGCTCTGCCGGACAC 40 122 COW1_RS01895 NONE COW1_RS01900 429538 .. 429575 + -14.1 -3.16564 GCACAAACCGGAATC TACCCCGTCATCCCGGC CTGC GCCGGAATGACGGGAAA TTCGTCAAGTAGCCA 83 96 COW1_RS01905 431442 .. 431475 + -8 -2.70932 GTTAAAGTAAGGTGA CGGCCGGGGGCGGGC GAATG GCCCATA-CCGGCCG TCATTGCGAGGAACG 54 26 COW1_RS01910 NONE COW1_RS01915 NONE COW1_RS01920 433878 .. 433928 + -19.9 -3.61922 GGAAGACACGGAATG TCTGGGATTGCCATTGCCGTGGCGC TGC GCGCC-CGGCAATGGCGA-CTCGGG TTTCACATGCATATT 100 72 COW1_RS01925 NONE COW1_RS01930 NONE COW1_RS01935 437395 .. 437411 + -7.9 -2.82516 TCCAGATCCACCTCG GTCGAGG TGT CCACGAC TATGCTGATCCGGCG 52 355 COW1_RS01950 439555 .. 439599 + -14.4 -3.0263 AGCCAACGTTCAGGC CTGTTCGTTGGGTTACGGCGC TGTC GCGCC-TAACCCAACCTACGG TGTTCCAGACCTCCT 83 64 COW1_RS02000 448947 .. 448965 + -8.8 -2.73994 CGTGATCCCGACCGA CCTACCGG CAC CCGGTACG TACTGTTGACCGGCT 58 36 COW1_RS02005 NONE COW1_RS02010 451299 .. 451314 + -11.8 -4.81551 GACCCGGTGAAAAAA GGCGGC CGCG GCCGCC TTTTTCATGTCCCTC 100 65 gltX 455808 .. 455821 + -9.5 -3.31726 GATCCAGATCATGAC GGCCG GCGC CGGCC TGTTCTATAAAGGGA 66 39 COW1_RS02035 456628 .. 456638 + -4 -4.7458 AAAGCTTATGGCCCA TATC TCG GATA TTTATTTATTCTGAT 75 182 COW1_RS02040 457991 .. 458032 + -7.1 -3.12261 ATCGTCGCGTCCGGG GCATGATGGGTTACGGCGC CGGG GCGCCTGCACCCATCCTAC TGTCTGGTTTGTTTG 54 121 COW1_RS02065 465470 .. 465485 + -3.2 -3.53012 TAAAGTAAGTGCCAT TCGGTA CAGT TGCCGG TTTGCGAGCGCCCCA 49 213 COW1_RS02070 NONE COW1_RS02075 NONE COW1_RS02080 465941 .. 465964 + -16 -4.38927 GCCATTACGATCAAA GGCCCGGGGT TCTG ATCCCGGGCC TTTCTTGTATAGCGA 100 37 COW1_RS02095 467442 .. 467469 + -7 -2.69964 ATCGGGATCTGCAAG CCGCGTTACTGGA AAA TCCGG-AACTCGG TGATGTGATTCCCGG 50 276 COW1_RS02100 NONE COW1_RS02105 468069 .. 468082 + -2.3 -3.03473 GGACTACGGCAATTG GCGTC ATAT GACGG GTTGTTTGATGTATA 41 61 COW1_RS02110 468361 .. 468405 + -15.2 -3.53012 GATGACCCTCTGAAA GGGGTCGGTGACAAAACGCAA TCAT TTTCATTT-GTCACCGACCCC TTTAAAGGAGGCGAG 88 70 COW1_RS02115 NONE COW1_RS02120 471812 .. 471845 + -3.8 -2.52543 TCCACCCGCGCCTCG GCCTCCAGGCC-GTC ATCGA GATAGGCCTGCAGGG TGCGTTGGGCGGCCT 40 227 COW1_RS02140 474359 .. 474376 + -4.7 -5.48825 GATCCGGTTTTGTAG CGGCTGG CCCG CCGCCCG TTTTTTTCCGTCATC 90 26 COW1_RS02145 475284 .. 475294 + -8.2 -3.41878 GGCGGGGATCCAGTT GCCG TGG CGGC TTGTGGATTCCCGCC 61 99 COW1_RS02150 NONE COW1_RS02155 476460 .. 476476 + -9.3 -3.06162 ATTTCCTGTCAGTTG GCCGGGC CGG GCCGGGC TGTTACCATGCCCTG 64 42 COW1_RS02160 478420 .. 478430 + -5.4 -3.62522 CCGCCATGTACTCGC TCAG CCG CTGA TTGTTCAGCCGGTTG 57 171 COW1_RS02185 NONE COW1_RS02190 482017 .. 482049 + -2.5 -3.14468 GCTGCGTCAGGGCCA GGGCGAGATCGAGGC GCT GGCATGATCTCGCAG TTGAGTCTGATCCAG 41 1 COW1_RS02195 482762 .. 482793 + -6.4 -2.57931 GGCACTTGCTGCTAC CTCGTCATCCCCGC GAAG GCGGGGATCCAGGG ATTGTCCGCCCTGCC 48 48 COW1_RS02200 NONE COW1_RS02205 485313 .. 485365 + -9.2 -2.79796 GGAAGGAGATAATCA GCCC-AGGTAGGTTGGGTTA-GGTGC GCA GCACCGTGACCCGACATGTCGCGGGC TGTGGTGACGTCAAC 61 138 scpB NONE rluB NONE COW1_RS02220 488294 .. 488309 + -6.8 -3.14564 GGCGCAGTCGAGTGC GGCCTGC ACC GC-GGCC TTGATGGCGCAGTCG 52 374 COW1_RS02230 490799 .. 490841 + -6.1 -3.02144 TCCTCGCCGGGATAG GCCTGGGTGC-GCAGCCGGG TGCG CACGGCGCCCGGATCCAGGC TGTTGACGCGGATGC 49 419 COW1_RS02285 NONE mtnA 503228 .. 503254 + -12.3 -4.83169 GTCAAACCCCGTCTG AGCGCCTCAGA TTCGT TCTGAGGCGCG TTTTTCTGGGACGCT 100 323 gyrA NONE serC 507181 .. 507227 + -6.7 -4.28375 GAATTGAAATGATTA TGGT-TTTTCATTGCCG-GGCGC GCA GCGCCACGGCAATGACAATAAAA TTTTCCGTGTCTTCC 72 74 COW1_RS02305 508550 .. 508592 + -2.7 -2.57501 ATTGAGGCTACCGCG TTA-CGAGATTGCCGCGGCGC TAC GCGCCTCG-CAATGACGATGA ATATATTTGATAGCC 38 124 pheA 510022 .. 510053 + -12.4 -2.53263 CAGGGGCCTCACCGG TGTCGGATTACGCCC TGC GGGC-TAATCCGACC TACGTTGCAGATCGA 68 273 COW1_RS02315 511327 .. 511348 + -2.3 -3.07816 GGGGTGACGGAAAAA TGCA-TTGCA GCG TGCTATTGCA TTCGCTGCATACGAG 41 145 COW1_RS02320 512394 .. 512423 + -13.7 -2.71791 AAGGCAGTAACGTAG GTCGGGTTA-GTCC GCA GGGCGTAACCCGAC GTTTGCCGCGACGCT 76 181 aroA NONE COW1_RS02330 514645 .. 514667 + -14.2 -4.32857 TTTGTACGAATCGGC GCCCGGATAG CCC TTATCCGGGC TTTGTCTTTGCAACC 100 187 rpsA NONE COW1_RS02340 NONE COW1_RS02345 NONE lapB NONE pyrF 519149 .. 519165 + -2.1 -2.70932 CCATCAATCGCGAGT TGGCGCC GTA GGTTCCG TCATTGCGAGCGCAG 39 15 COW1_RS02360 519637 .. 519664 + -4 -2.72839 CCGTCTCGCAACCCG TGGCGGACGCGGC CCG GCCCTGAC-GCCA TAATTACCCGTCATT 43 3 COW1_RS02365 521362 .. 521379 + -2.7 -2.81476 TGTCTACGATCGAGT TGGACAA TAGG TTGTACA GTATTTTCGATACGT 39 16 COW1_RS02370 NONE COW1_RS02375 523909 .. 523925 + -2.9 -4.35742 ATGGCGATAGATGAT TATGCCT GTG AGGCCTG TTTTCATCGTTGGAT 64 31 COW1_RS02380 NONE COW1_RS02385 NONE COW1_RS02390 527368 .. 527389 + -2.3 -2.95766 TCGATCGTAGGTGCA GTGTTGGTA GTTA TATCGATAC TCATTATCTATTATG 40 45 COW1_RS02395 NONE COW1_RS02400 NONE COW1_RS02405 NONE COW1_RS02410 NONE COW1_RS02415 NONE COW1_RS02420 NONE COW1_RS02425 533458 .. 533481 + -2.4 -2.78816 GTCACAGAGACAGGG GCGGTATATA GGAT TGTGTGTCGC TATGCTGAAAGATGA 39 15 COW1_RS02430 535251 .. 535261 + -5.4 -3.18788 CCATGCTTCCATGAC GATC AAA GATC TGCTTTTATGAATAC 51 27 COW1_RS02435 536703 .. 536729 + -3.9 -3.30124 GATGATGCTTGTGGC GATTAGA-AAAC TCAA GTTTGTCTAGTC TTGTCGAGGCTAAGA 47 1 COW1_RS02440 538825 .. 538851 + -9.5 -2.56413 ATAGTGATTACTGGA TCCCCG-CATTC GCGG GGATGACGGGGA ATCTGTTTCGCCTTT 60 98 galU 540066 .. 540087 + -15.9 -3.72363 GCCGTAAACAAAAAA GCCCGCATC GACC GATGCGGGC TTTCGCGTTTGGCTC 100 196 uvrB 544236 .. 544283 + -19.2 -4.32482 TGCCTACTGGACCGC AAGCCGCAGGTCGGG-TAAGCCC GAA GGGCGTAACCCGACGTGCGGCTA TTTTAACTTGTCCGT 100 432 COW1_RS02480 547320 .. 547344 + -12.2 -5.04325 AATCCTGATCGAACA GGGGACAGAT GCCCG GTCTGTCCCC TTTTTATACTTTCAG 100 41 thrS NONE infC 549868 .. 549883 + -9 -4.71776 TCCCCGAAAAAGTGA GCGATC GCGC GATCGC TTTTGTTCAATGTTC 93 26 rpmI NONE rplT 550568 .. 550590 + -10.6 -5.52023 GCGGCAAGTCAAAAA GGGAAGGC CGGTAGT GCCTTCCC TTTTTTCTTCGTGGT 100 78 pheS NONE pheT NONE ihfA NONE COW1_RS02520 555175 .. 555189 + -4.3 -4.41895 TGGCTGTCAGGTCAA GTTCA GGCGA TGAAC TTTTCCTTCCAGATT 68 102 COW1_RS02530 556900 .. 556935 + -10.4 -3.63627 CCCGGCGGGCGTTCA GCCTGCTGCGTTCGTCC ACC GGACGCACG-GTCAGGC TTTACCCTCTCGCCC 75 360 COW1_RS02535 558153 .. 558174 + -4.4 -3.90318 CCTACGCTCGGCCAT TCCGGC-CT GACAG GGCGCCGGA TTTCTGGGATAATGC 59 238 aroG 559377 .. 559393 + -2.1 -2.52676 CGTAACCCATCGCTG TCCACCG GGC CGGGTGA TGGGTTACGGCGCTG 38 79 prfB 560707 .. 560742 + -2.4 -3.35679 CAGAACTTCCCGTCA TTC-CCGCGAAGGCGGG AAT CCAGTGATCGCGGCGAG TTCTGGATCCCGGCC 46 138 lysS 562464 .. 562495 + -3.6 -4.57569 ACTTGACAGCCTTTG CCCGATCTGGCC TTATAGGT GGCAGGATGGGG TTTTTAAAGGAATAA 70 150 COW1_RS02555 564556 .. 564578 + -7.6 -2.71731 CATGAGCGGGTAGGA TGGGTGGAGC GCA GCGCAACCCA TCGTTGCACGGTGCG 54 66 sdhC NONE sdhD NONE sdhA 568504 .. 568520 + -9.3 -3.13371 GAGCGTGGATACTTT CCCGCCC AAG GAGCGGG TGTATTGATGGGATA 64 1 COW1_RS02580 569401 .. 569429 + -8.7 -3.28924 CGTCCTCCCGGGCGA TGGGTTACGGCGC ACG GCGCCTCCACCCA TTCTACGCAACGGTG 63 92 COW1_RS02585 569811 .. 569854 + -16.8 -3.4678 TGGTAGTCCTGATCA TGTTTTCCCGTCATTCCGGC CTGC GCCGGAATGACGGATAATCA TTCTGATATCCACCT 90 123 COW1_RS02590 NONE COW1_RS02595 NONE COW1_RS02600 572391 .. 572419 + -7.3 -3.17054 GGTGCTGATCCGGTA GGATGGGTGGAGC GCA GCGCAACCCATCG TTGCATGATTTGGTG 54 25 COW1_RS02605 NONE COW1_RS02610 574449 .. 574483 + -12.8 -2.78384 CGGAACTATTGCGTA GGATGGGTGAAGGCGC TAA GCGCCGTAACCCATCA TGTCCTGCCGCACCG 73 62 nagZ 575688 .. 575717 + -7.1 -2.62184 TTGTTCCGAGATCGC CGCAGCGCATTGCG CCA CGCAATG-GCGGGG TCGTCTGAAACGCCG 50 100 COW1_RS02620 NONE rssA 577870 .. 577886 + -2.1 -2.77182 GTAGGATGGGTGAAG CGAAGCG CAA CCCATCG TCGTTCGATATCCGA 39 49 COW1_RS02630 NONE COW1_RS02635 NONE COW1_RS02640 NONE COW1_RS02645 NONE COW1_RS02650 582536 .. 582590 + -18.9 -3.33399 TCCATTATTAGTGGA TTAAAGGGGTCGGTGACAAATGAGAA TGAT TGCGC-TTTGTCACCGACCCCTTTAG TTCCCTTTAGTTCCA 100 22 COW1_RS02655 NONE COW1_RS02660 583627 .. 583650 + -5.9 -3.01791 AACAAACGGCTCAAG CACGACGCGC ATACA GCGCG-CGCG TCTTAGCCGAGCCGT 48 47 COW1_RS02665 NONE COW1_RS02670 NONE COW1_RS02675 585480 .. 585494 + -3.5 -4.27316 AGTACCCCACAAAGT GTCTC GTAGA GAGGC TTTTCGATTCAGCAC 64 214 COW1_RS02680 587076 .. 587090 + -7.8 -3.34962 CTGTAGGGAAGGCGT CCGGAG TTT CTTCGG TTCTGGAATCTGGGG 61 283 COW1_RS02685 588126 .. 588143 + -6.2 -3.31461 TTCGCTTCTGGTGTG CGCCGT GCAAAG GCGGCG TTATCCCCGTGGGTG 54 129 ltrA 590143 .. 590157 + -11.4 -4.75289 CTGTAGGGGAGGCGT CCGGAG CTT CTCCGG TTTTGTCTTCTGATG 95 217 COW1_RS02710 596075 .. 596117 + -12.1 -2.53249 GTTTGATGTGACAGC CCACAGCGTCGGGTTACGCCC TTT GGGC-TAACCCGAC-CTGCGA ATGTCTTATGTGGCA 68 167 COW1_RS02725 598463 .. 598476 + -5.2 -3.06815 TGGATCCCGGCCTTC GCCG GGATGA CGGC TCTGTTGCGGAGGAT 49 149 COW1_RS02765 607193 .. 607210 + -8.5 -3.06183 ATGCCGTTGACCATA TATACGG AATA CCGTATA TTCGGTCGCCATGCA 60 310 COW1_RS02770 NONE arsC 608227 .. 608260 + -14.7 -2.59431 CGACGGCCCGCGGCA TGTTGGGTTACGGCGC TGT GCGCC-TAACCCAACC TACGTTATGCCGGAC 78 133 arsB NONE COW1_RS02785 610240 .. 610252 + -10.5 -3.32844 TCACCCCTTCGGGGC CGCCC TGC GGGCG TTCTGCGCTCGCAAG 69 192 COW1_RS02790 NONE COW1_RS02795 612526 .. 612540 + -8.5 -2.6518 GCGAATCTTCAGAAA GGCCG CCCGC CGGCC GTTATGACTGTTGAA 57 43 COW1_RS02800 613042 .. 613057 + -6 -3.58869 ACCGCCGTCCCTGCA CCGGCC ATCC GGCCAG TTCTGTCCATTTCTG 58 40 COW1_RS02805 614170 .. 614189 + -5.7 -3.09516 TATCAACGGCGGGTT CTGGCAG CCGCAT TTGCCAG TTGCATGATAGCGCC 49 56 COW1_RS02810 NONE COW1_RS02815 617240 .. 617251 + -7.2 -3.06796 GATCTCGTGGTAACT GGCG CTCT CGCC TTGGCTGAAGTAGAC 51 194 COW1_RS02860 NONE COW1_RS02865 626696 .. 626707 + -7.2 -4.30978 TTGCCGTCACGGGCC CGGC GCAC GCCG TTTTCATCCGTTACC 75 149 rpsB 631929 .. 631962 + -5.1 -3.53811 CTGAACAATCACCCT TTCCGTCATCCCCGC GAAA GCGGGGATCCAGGGG TTTCAGAGACATGGA 53 61 COW1_RS02895 633039 .. 633059 + -18.3 -3.07935 CGGAGCATGCCGAGA TGGGGCCGC ACT GCGGCCCCA TTGCATGCGTGGCAT 100 68 COW1_RS02900 NONE frr NONE uppS NONE COW1_RS02915 NONE COW1_RS02920 637274 .. 637312 + -6.7 -3.21416 CCGCGGACGCCGGCA GGCGGT-CTCGTGAACGG CATC CTGTTCACCATCGCCGCC TTCGTCGTCGCCATC 54 13 rseP NONE bamA NONE COW1_RS02935 NONE lpxD NONE fabZ NONE lpxA 643941 .. 643954 + -6.7 -2.80816 CCCGCGGCATCGTGC GCTGA AGAT TCAGC TGTCATGGATGAAAC 49 21 lpxB NONE rnhB 645778 .. 645809 + -2.8 -3.54129 AGAGCCGGGGAAAAG CGGTCTCACAGGCCG GAT CGG-CTGCAGGCCCG TTTCCGGCAACTGTC 49 44 COW1_RS02965 647486 .. 647500 + -4.2 -2.70932 CAGCACATACCAGGA TCGATC CAT GAACGA TACTTCCCGACCCGG 43 15 COW1_RS02970 NONE COW1_RS02975 NONE COW1_RS02980 650724 .. 650738 + -6.4 -4.29227 GCAATGACGGATTAA TCAGGG AAC CTCTGA TTTATTCGTCATTGC 72 49 dnaE 654625 .. 654638 + -3.7 -4.19624 AAACTCTGCGTTCTC TGCGC CTTC GCGCC TTTGTGTTGAACATC 62 163 COW1_RS02990 655883 .. 655910 + -2.6 -3.59979 GAGTGAGCGCTGCCG GGCGCTGTGCCGG GAG CTGG-ACATCCCC TTTGAACTGCACCGG 47 246 COW1_RS03000 NONE kdsA 659797 .. 659827 + -16.3 -2.7782 GGTGCATCCTTGTAG GTCGGGTTA-GCCC GACA GGGCGTAACCCGAC GTTATTGCCGCGTTC 86 40 eno 661292 .. 661308 + -5.8 -3.23692 TGGGATAGGTGGGCA CC-GCGC TGAT GCGCTGG TTGCTGCTGATCCTC 51 33 ftsB 661684 .. 661694 + -2.4 -2.68823 TCCGACCTACGGGAC CTGG ACA CCTG CTTATGTCACACAGC 38 116 ispD NONE ispF 663189 .. 663208 + -10.6 -2.74144 CCTGACCCTCGCCCG CGGCCGCG AACT CGCCGCCG ATTTCGGCATCGAGG 63 339 COW1_RS03030 NONE COW1_RS03035 666354 .. 666367 + -6.7 -3.32844 AACAATTGGCAATTA CGACA AGGA TGTCG TTATGAACTACCGAC 56 164 COW1_RS03040 NONE COW1_RS03045 669519 .. 669537 + -3.8 -3.12327 TCGGGAAGTTTTTGT CGGATTCC AGC GTAATCTG TATTGAGTGTCGGGA 45 1 COW1_RS03050 670543 .. 670558 + -7.6 -3.11088 TGCGTGCGCAGAAAA TCATGG ATGG CCATGA TCTGTTGCGTGCCTT 54 214 COW1_RS03065 672631 .. 672675 + -7 -3.65046 CGGTCGTGCAGATAA CGGCGCAGCTGGGCA-GCGTT GTGA AAGGCATGACCCGCCGCGTCG TTGTTGAAGTAGGCG 61 89 truD 674530 .. 674564 + -11.4 -2.70665 TGCCGGGTAGCGTGC CGATGGGTTACGACGC TGC GCGTCTTCACCCATCC TACCTTGTTATATGT 66 91 surE NONE COW1_RS03090 NONE COW1_RS03095 NONE COW1_RS03100 NONE rpoS 679102 .. 679142 + -4 -2.74144 GGTCGGGTTAGCGCA GCGTAACCCTACAATA CAGCGCGAA TCCTGTCGGGTTACGC CTTTCAGGCTAACCC 43 114 alaC 681143 .. 681172 + -14.3 -5.20633 TGCCTGACAGTTTTC CCGTCATTCCGGC GCAT GCCGGGATGACGA TTTTTGTCTATTTTT 100 111 COW1_RS03120 682665 .. 682706 + -4.3 -3.43774 ACCCGACGCAGTCCG CCGGGCATGTCGGGTTACGC TGC GCTT-ACCCGACCTACGTGG TTCAGTTTTATATAC 49 110 COW1_RS03125 NONE COW1_RS03130 NONE recJ NONE COW1_RS03140 688672 .. 688699 + -3.3 -2.79183 CCGATTTTCTGAGCG GCTTCCCGGTA TTTTTC TGCCGGGACGG TATACTGGGGCTCGA 41 42 COW1_RS03145 NONE COW1_RS03150 690133 .. 690150 + -4.1 -2.92475 CCTGCGCGGGGATGA CGGATAT AGTG AAATCCG GTTTATCAGGATGCA 44 136 COW1_RS03155 692375 .. 692398 + -8.8 -3.15861 CAGGCGCGAGGACTC GCGGATCAGC TGCT GCTGGTCGGC TTCCTCCAGCTGATG 56 334 COW1_RS03165 693636 .. 693672 + -5 -3.965 TGGCCTCTTCCTGGT CGACGTCCTCGAGCCGG TCCT CCAGCTCATGGATG-CG TTGTTCGTTTTCGGG 61 414 COW1_RS03230 NONE COW1_RS03235 NONE COW1_RS03250 710415 .. 710434 + -7.8 -3.60627 GACAGCAGCCTGAAG TCAGGGCG CCCG CACCCTGA TTTCCGCTCAGCTGA 62 63 COW1_RS03260 711370 .. 711388 + -3.7 -4.51174 AGGTTGGTCTAACCC GGCGCTC AACCC GGCCGCC TTTTCGTTGTAATGA 68 29 COW1_RS03265 712593 .. 712603 + -2.4 -4.19483 ATTGTAGCCTGATTC GCCG TCG CGGG TTTCTGTGTATCTGA 59 128 COW1_RS03270 713922 .. 713938 + -9.3 -3.86822 CAGAGAAGGGGTGAT CGGAGGC GCC GCCGCCG TTTCTGCCGGGCTTG 75 27 COW1_RS03275 715035 .. 715065 + -6.2 -2.97021 TCAGCCCTCAGCTGT CTGCTTTCAGTT TGAATTC AGCTGAAGGCGG TATCCTGTTTCCAGA 51 60 COW1_RS03280 715871 .. 715898 + -4.8 -3.57263 GGTTCCGTGACAGCG CCCTGTGT-CAGG GCG CCTGCACCCATGG TTTCCAGCTCAACCT 53 55 COW1_RS03295 NONE fghA 720386 .. 720397 + -5.8 -3.12351 GTCTCGGGTCCTGAG GGTG AACT CACC TTCGGTCTGACCGAG 49 498 COW1_RS03325 727511 .. 727524 + -4.5 -3.01712 CCAGCAGCTGCCAGC G-CCGG CCG CCGGAC TGTTCCCACAGCACG 45 102 COW1_RS03345 730967 .. 730985 + -13.1 -5.42975 AGTGCAGGACAACGA CCCCCGC CCAGT GCGGGGG TTTTTGTTTGTATGC 100 68 icd 732736 .. 732750 + -7.8 -3.81089 ACCTCGTTTACCGCT GCGGTT CAC GACCGC TTATTGCTGTGTGTG 68 255 clpS NONE clpA 735664 .. 735688 + -19.3 -5.626 GCCGCACGAACATCA CCGCCCGACCG TCC CGGTTGGGCGG TTTTTTTATGGGCTG 100 50 ald 741339 .. 741361 + -9 -2.73364 AGCGGTCGAGAGTGC CGGCCACATC CCT GAAGAGGCCG TCATTCCCGTACCGG 58 81 COW1_RS03400 NONE lolA NONE COW1_RS03410 NONE COW1_RS03415 746233 .. 746244 + -4.4 -2.71731 CCTGGGATCCTGCAT CGTT CAAT AACG TCATTCCGGCATACG 44 97 crcB NONE COW1_RS03425 747150 .. 747182 + -12.8 -2.54193 AGTTGCGATGGACGG TGTCGGGTTACGCCC TGGC GGGC-TAACCCGACC TACGTTGAGATCATA 71 85 serS 748585 .. 748598 + -8.1 -3.73783 CCAGCAGTTCAGCGC TGCCG CGAT CGGCA TTCTTCCATTCACTG 63 119 COW1_RS03455 752641 .. 752660 + -13.6 -5.60993 AGGGGTGTAGCTTTA CCCTCCCT GTAA AGGGAGGG TTTTTTTATGGCCAC 100 114 pepN NONE COW1_RS03465 756550 .. 756571 + -11.5 -2.71791 ATAGTTGCGCCCGGT CCGGGCTGC GCGC GCAACCCGG CTTTGCCCGCCGCGT 66 117 cobA NONE COW1_RS03475 758462 .. 758500 + -18.2 -2.65298 CTGATCCTGCTTCAG GGCACGTCCGGTCCCGT GGTCAG ACGGGACCGGCCG-GCC GTTATCATCACTCCG 95 37 COW1_RS03480 759828 .. 759862 + -2 -4.07568 GCGAGGCCTGCTGGT GTGCGGCCTGCGCGC GTGGCG GCAC-CAGGCTGTCC TTTTCCGGCCAGGGA 58 321 COW1_RS03580 NONE COW1_RS03585 780546 .. 780579 + -8.3 -3.09581 GATAATGGCTTAAAT CCGGT-TAGCAGCA TGAATAC TGCTGTTATACCGG TATATTGGAAATTTC 57 36 cas6 781319 .. 781340 + -18.7 -2.80056 CAACTGACGCCTGTA CGCCGCGGC AACG GCCGCGGCG CTTTCAATCAGTACT 100 34 COW1_RS03595 781830 .. 781842 + -4.7 -2.78384 GGATATAGTTGCGGG CCGAC CGT GACGG TATAGTCCCGCCCAG 44 65 COW1_RS03600 782129 .. 782145 + -10.1 -5.71712 GCACTGCAGAAAAAA GCCTCAC CTG GTGGGGC TTTTTTTATGTCCGG 100 47 COW1_RS03610 NONE COW1_RS03615 783611 .. 783623 + -2.6 -2.90496 CCGCCTCGGTCCCGC CTGC CTTTT GCGG TCATTTCGCGGCCGG 40 61 COW1_RS03620 785133 .. 785143 + -8.2 -3.13403 TTGCTGCAGCAGCAC CGGC GTG GCCG TGTTCATCCAGGCCA 56 485 COW1_RS03645 788813 .. 788823 + -4.6 -2.62184 CAGGCTGTCACCGGG CGCG GCC TGCG TGGTCTGGGGAGACA 42 501 COW1_RS03665 NONE COW1_RS03670 NONE COW1_RS03675 794096 .. 794106 + -4.6 -3.54919 TCCTGACTGCTGCCG CGCG GGC CGTG TTTGAGCCAGTGATT 52 113 COW1_RS03690 795687 .. 795710 + -16 -3.63744 CTGCCGCCAGGGCCA CAGCGCCGCC CCCG GGCGGCGTTG TCTTTTGCGGGCACA 100 143 COW1_RS03750 806112 .. 806126 + -5.7 -3.35679 GCTTCCCAAGGCGTA TCAGC CAGGA GCTGA TTCTCCGTCAGACGG 53 193 COW1_RS03755 NONE COW1_RS03760 809035 .. 809048 + -4.5 -3.61398 CTTCTGACCCCAAAC GGGCT GAAC AGTCC TTATTGCAGGGGCGC 53 34 uvrY 814181 .. 814195 + -3.5 -4.40804 GAGCCGGCACGCGGT CTGAC GTCCG GTCGG TTTTCTGGGATAATG 64 39 COW1_RS03795 NONE uvrC 816842 .. 816854 + -4.9 -2.74604 TGGTTGAATAAATGA CAATA TTA TATTG ATATTTATGAATTAT 44 138 pgsA 817428 .. 817438 + -3.2 -2.80195 CCGCTGCTGGTAAAA TCCG ATA TGGA TACTTAGTCCTGAAT 41 8 COW1_RS03810 817604 .. 817630 + -10.8 -5.22039 ATTCCATCGGGGAAA CCCCGGTCGT GGTCCAG GCGGCCGGGG TTTTTTCACTTTCAG 100 42 COW1_RS03815 NONE COW1_RS03820 NONE COW1_RS03825 818467 .. 818483 + -10.8 -5.40072 GATCCGATGAACGAA CCCGCC GGTGA GGCGGG TTTTTTTCGCAAAGG 100 53 COW1_RS03835 NONE COW1_RS03840 NONE COW1_RS03845 823230 .. 823255 + -4.6 -3.10017 GCAACGGACGCCCGA CGGCGGTCTG TCGGGC CAGACCGGGG TATCTGTTCCGACTT 47 524 COW1_RS03865 825913 .. 825934 + -11.5 -3.14132 TGCCCACTGCTGGAT GGGCCGGGT CTTG AGCCGGCCC TTGATGACCACGGCC 66 325 COW1_RS03875 NONE odhB NONE lpdA 832741 .. 832753 + -4.8 -3.01712 ACCGCGGCCAGGACG CCCT TGAAC AGGG TGTTGACGACCGCAG 45 226 COW1_RS03895 835037 .. 835047 + -2.4 -2.92951 CGGAATTCATAAAAA CCCC GCA GGGA ATTTATAAGCCTCTG 40 188 sat 836334 .. 836349 + -11.8 -5.76237 GCCTGAAAGACGAAA GCCGCC TCCG GGCGGC TTTTTTATTTATGTG 100 51 COW1_RS03940 NONE COW1_RS03945 NONE COW1_RS03950 843751 .. 843767 + -2.2 -3.63464 GACGAGGGCGCGCGC CCGG ATTGAGTGA CCGG TATTATTATTTAACA 47 77 COW1_RS03955 844311 .. 844335 + -8.6 -3.85817 TGATTGACTGGCCTC GTGGCCGT ACCTGTAAC ACGGCCAC TTTGTCCACCGGGGT 72 89 COW1_RS03960 845008 .. 845038 + -8.8 -4.67038 CGGCCGTCAGGCCGG GACCGTGGGGGCGC TGC GCGTCTCTTCGGGC TTTTGGTTTTGCGAA 86 78 COW1_RS03965 845827 .. 845851 + -8.6 -3.85817 TGATTGACTGGCCTC GTGGCCGT ACCTGTAAC ACGGCCAC TTTGTCCACCGGGGT 72 89 COW1_RS03970 846524 .. 846554 + -8.8 -4.67038 CGGCCGTCAGGCCGG GACCGTGGGGGCGC TGC GCGTCTCTTCGGGC TTTTGGTTTTGCGAA 86 78 COW1_RS04000 854708 .. 854744 + -15.9 -2.62263 GTAACGCCCTGATTA TGCAGGTTGGGTTTCGC GTT GCTCAGCCCAACCTGCA TAGTGTGACGGACAT 84 37 COW1_RS04005 NONE COW1_RS04010 NONE COW1_RS04015 NONE COW1_RS04020 NONE COW1_RS04025 NONE COW1_RS04030 864198 .. 864231 + -5.3 -3.27704 GCCGGATTTCCACGT CGATGCAGGTTGCGGT ACG GTCGTGA-CTGCGTCG TTCCATTTCCGCCCT 51 488 COW1_RS04140 NONE COW1_RS04145 884750 .. 884772 + -4.7 -3.66874 AGCGCCTCGAGCATT CGGCGGTGG AGAAG CCGTAGCCG TTTCAGTAAGATTCC 56 157 oadA NONE maf 887348 .. 887381 + -11.1 -2.58999 GCCTTGATAAAGATA TCCGTCATTGCGAGCG AAG CG-TGGCAATGACGGG GTTAATCTGTAACGC 66 34 COW1_RS04160 887691 .. 887701 + -8.2 -4.37886 CTCCGGGCGTTCAAC GCGC TGC GCGC TTTTGTCCGGCCTGC 77 109 rne 894313 .. 894333 + -2.5 -3.72893 CTTGCGCGCACGCTG CGCGG ACAGGTCATAA CCGCG TTTGCTGGCGGCCTC 51 522 COW1_RS04190 895256 .. 895267 + -5.8 -3.31792 AGCATCGCCACCAGA TGCG AATG CGCA TTCTCCGGCTCGTCC 51 335 COW1_RS04265 908399 .. 908431 + -11.9 -2.7263 AGGGAACTCTCGTAG GATGGGTGAAGGCGC GGT GCGCCGCAACCCATC GTTTCACCGCGTCAT 70 26 COW1_RS04285 NONE COW1_RS04290 NONE COW1_RS04295 913924 .. 913940 + -5.1 -4.11216 GTCACTTCGTTCCTC GCAATGA CGG TCCTTGC TTTTCCCCATCAGAC 64 212 COW1_RS04305 916791 .. 916801 + -2.4 -2.71144 CGGCAACGGCGGAAC CGAG GAA CCCG TCATTCCCGAAGATC 39 165 COW1_RS04310 917602 .. 917620 + -16 -5.75538 CCGGAGTTCCTCACG GAGCGGCC AGT GGCCGCTC TTTTTATTTTTTGCG 100 52 COW1_RS04335 NONE COW1_RS04340 924915 .. 924932 + -14.1 -5.626 CCCTTAATACAACAA CCCGCGC ATCT GCGCGGG TTTTTTTATGGGGTG 100 55 COW1_RS04345 925783 .. 925810 + -3.2 -3.48593 CGCCGCCCCGCACAT GGC-GGGGTAGGC CCT GCCGTCCCGAGCC TTCTGTCCGCAGATC 48 167 COW1_RS04400 NONE glcE NONE glcF 940995 .. 941039 + -6.9 -3.7732 GCCCAGAAGCCCAGG GCGCCGTCTCCCACGGCCAGC TTC GGTGGCACTTCGAGACCGCGC TTCTTCATCTCCAGC 64 473 COW1_RS04420 942767 .. 942804 + -2.8 -4.09374 TCTCACCGAAAGAGA TCGTCGGATATACTTCG CCAGC CGTTGTATATCC-ATGA TTATTCTTCTCTGTT 59 469 COW1_RS04460 952981 .. 953018 + -6.2 -2.65264 GCCGCCGAACTGGAT GCCCCGGGTGAGCCG-GC TTAG GCGCTGCT-GCGCGGGGC TGCTCTGCCTGCTGC 48 5 COW1_RS04465 NONE COW1_RS04470 953926 .. 953959 + -10.9 -2.70932 GTACAAGTAAGACGA ACCGCCGCCCTGC-CG ACC TGCGCAGGGCGGCGCC TCATTCCGGGAGCGA 66 31 queF NONE COW1_RS04510 NONE cysZ 967056 .. 967073 + -5.5 -3.04461 CCTCCTCCAGCAGCC GCTGCGA GAAT TCGAAGC TGTTCCCGGTCAATG 47 266 dksA 969833 .. 969855 + -4.6 -2.55392 GTTCCGTCCGGACAG GGACGGACCG GAG CGGCCCGGCG TCAGTTCCCTCCCTT 43 78 gluQRS 971029 .. 971041 + -9.1 -3.42366 GCTGCCATCTTCTGA TCGGC GTT GCCGA TTCTGAACTTTTCCA 63 250 acs NONE COW1_RS04550 974701 .. 974715 + -2.8 -3.46888 GGGACCCACGGGCCC CTCG ACCAGAG CGAG CTTTTATTATGAATG 47 409 COW1_RS04555 976119 .. 976140 + -14.5 -4.48713 GCGGGGAACCGAAAA TGCGGCTGA TCGC TCAGCCGCA TTTATTATTGCTGCG 100 53 COW1_RS04600 986876 .. 986897 + -17.3 -5.60993 TCCCGTGATAAAAAA CGGCCCGTC ATTC GACGGGCCG TTTTTTTGTGGAGCG 100 54 COW1_RS04615 NONE COW1_RS04620 994414 .. 994456 + -8.2 -2.71011 CTGGGCATCCACATC GCCCGTCCTCGCCCGCTCG AACAGG CG-GCGGGCGTCGTCGGGA TCGTTGCGCAGCAGT 52 378 COW1_RS04640 996788 .. 996801 + -2.4 -3.002 CCGCCCCTGAATCCG TTGC ATCCCG GCAA TATCTGTACAATACT 40 120 COW1_RS04645 NONE COW1_RS04650 NONE COW1_RS04655 NONE COW1_RS04660 NONE COW1_RS04665 NONE COW1_RS04670 1002677 .. 1002691 + -4.9 -3.29511 GCCCAACCTACGTCT GCCGG AAATG CTGGC TTATCCCGGCCTACC 49 138 COW1_RS04690 1009860 .. 1009887 + -6.2 -2.66822 GTCGAGCTCCGTCCG GGGCGCGGAAGCC GAC GG-TTCACCGCCC GTATTATATTGGTTA 48 52 COW1_RS04695 NONE COW1_RS04700 1013982 .. 1013994 + -6.3 -3.11207 CCCAACCTACAAGAC TTGCA TCC TGCAA TCTGTCTCTTGCATC 52 223 COW1_RS04710 NONE COW1_RS04715 1017774 .. 1017786 + -4.7 -3.06515 CCGCAGATTATCGCC GCCTG CGC CTGGC CTTTTCCAGATGCGC 47 223 COW1_RS04840 1041025 .. 1041044 + -7 -3.12351 CCCGCCAGTCCAGTC CCGGGCGC GCCT GCATCCGG TTCGATATCAGCAGC 52 254 COW1_RS04890 1053958 .. 1053968 + -2.4 -2.57423 CCTGCAGCGCAAGTT CGGC TGG GGCG TGCATTCGTGAGTGT 38 4 recN 1055853 .. 1055878 + -8.3 -2.90723 TAACAATCCTCGTCA TTGCGA-GGCGC GAA GCGCCGTGGCAA TCTCGTTCGGGCTAC 56 38 COW1_RS04905 1057236 .. 1057251 + -6 -3.35046 CTTCTTCATCTTCTT GCCCGC CGCC GCGCGC TGTTTGCGCACCTCC 53 334 smpB 1060052 .. 1060082 + -3.9 -2.52543 ATATTAGGGAAGACA CACCGAAATCGGG GGCGA CCTGGTTTCGACG TGGGTTACAAAACCT 41 119 ssrA 1060641 .. 1060662 + -17.3 -4.56914 TCCACCAAACACAAA GGGCCACCC GAAA GGGTGGCCC TTTTGCTTTCGCTGA 100 213 COW1_RS04935 1060976 .. 1061015 + -16.3 -4.02051 GAAGCGCCCCTGAAA CGAAGCGCCGCGCGCCC CCTTAC GGGCGCGCGGCCACTCG TTCTTTCACTTCCTC 100 28 COW1_RS04985 1073876 .. 1073920 + -3.9 -3.50853 AGAATGATTTCCGTG CCCGCCGCGGCCTCGCTGC GACGGAA GCCCCGCGGCGGCAGCCGG TTGTCCTTGAGCAGG 51 522 COW1_RS04995 1078485 .. 1078506 + -17.3 -4.77438 TCCGGCAAACAAAAA GGCGCCACC TCAG GGTGGCGCC TTTTTCATGGTCGAT 100 50 COW1_RS05005 1082128 .. 1082167 + -11.5 -2.52464 ATCCTACGGGAGCCC GGCAGGTCGGG--GCAGCCC GCA GGGC-GCAACCCGACCTGCA TCGCTTCAGGCCGGA 65 177 COW1_RS05010 1083295 .. 1083331 + -14.3 -3.01712 ATATGGACTATATCT CGGCCTACCGGATCGGC ATG GCGGATCCGGATGGCTG TCTTAAGCAGGGAGA 82 102 COW1_RS05015 NONE COW1_RS05020 NONE COW1_RS05025 1084879 .. 1084899 + -19.7 -4.98531 ATCCGCCACAACCAA GCCGCCCCG ATC CGGGGCGGC TTTTTGATTTGCCGC 100 40 COW1_RS05030 1085838 .. 1085857 + -8.6 -3.83026 ACATGCGTCTGTCGC GCT-GACCG CCC CGGTCTAGC TTTCCTGTCCACCCG 72 187 COW1_RS05040 1087337 .. 1087352 + -4.6 -3.27994 CTTCTCGGCCACCGG GGCCAT CTCA AAGGCC TTCATATAGGCTTCG 49 320 COW1_RS05090 NONE COW1_RS05095 1099373 .. 1099393 + -2.3 -3.92522 AAGCGCGCAGCGTGT TGAACGCCC GAA GGGCGGCCC TTTATGCCCTTCAGG 53 111 COW1_RS05100 1100264 .. 1100274 + -5.4 -3.31144 CATAGGTGCGGGTCA GGAT ATA ATCC TTGTCGCCATCGGCA 51 268 COW1_RS05130 1108960 .. 1108973 + -5.9 -3.38812 AAGCTGCCTTTACCC CGGCG GCAA CGCTG TATTCTTCCAGCACC 55 424 COW1_RS05155 1116329 .. 1116345 + -6.5 -2.72991 TTCCCTGCACAATCA GGGCG CATACCA CGCCC TGATTGCACCTCTAC 49 103 COW1_RS05160 1117913 .. 1117926 + -3.7 -3.07043 CCGGTGATTGTCCTC ACGGC CCAG GCCGA TATTCAGGTAATCCC 44 508 COW1_RS05180 NONE COW1_RS05185 NONE COW1_RS05190 1124308 .. 1124322 + -2.7 -3.06796 GGGAAACCGCCGACC GCCTC CATCA GCGGC TTGGGTACGCTCAGG 42 485 COW1_RS05205 1126172 .. 1126186 + -5.6 -3.27653 CAAAACCTGGGTTAT GGGGCT ACA AGCACC TGTTATCATCGCCGT 51 48 COW1_RS05210 NONE COW1_RS05215 1127080 .. 1127099 + -16.4 -5.4111 CTGCACCCCGGGCAG GGCCCCGC CATG GCGGGGCC TTTTTTATGGTTCTT 100 52 COW1_RS05250 NONE COW1_RS05255 1133852 .. 1133879 + -15.6 -5.02074 GCGGCAATGAGCATG CAGACCCCGCGC TAAG GTGCGGGGTTTG TTTTTTCCGGCGTGG 100 51 COW1_RS05260 1134845 .. 1134880 + -14.6 -2.87211 AATATTCATCCTCGC CCGCGCCGGCCCGG ACCAGAAA CCGCTCCGGCGCGG TCTGTACCGCCAGCT 73 419 COW1_RS05275 NONE COW1_RS05320 1148640 .. 1148683 + -5.8 -2.78816 GATAAAGGTACTTGC TTCAGCTGCGTCATCCCCGC GAAG GCGGGGATCCAGCGTCTGAC TATCCTGCGCAATAC 47 109 folD 1161590 .. 1161600 + -3.2 -4.05446 GCGGTTCCACGACAG CGAC TGA GTTG TTTCTCCTTCACCGC 58 19 COW1_RS05420 NONE COW1_RS05425 1169314 .. 1169325 + -5.8 -3.17723 GAACCACGATGCGGA CGCA CGGC TGCG TTCAATTAACAATAA 51 60 COW1_RS05430 1170382 .. 1170412 + -7.5 -2.83715 GACTCGGGCGTCAGC TCCAGGTCGCG GAACTGACG CGCGGCCAGGA TCTGCTGGTACTGGC 52 342 COW1_RS05450 1173979 .. 1173995 + -2.2 -2.87132 CCCGGATAGTAGACC CGTTCG ATGGC CGGATG TGTCTCCAGCCAGCG 40 474 COW1_RS05510 NONE COW1_RS05515 1186440 .. 1186457 + -14.1 -3.88766 CTGGAAAAGAACAAA GCCCGGC GGGT GCCGGGC TTTGCTATCTACAGT 100 492 COW1_RS05550 1194683 .. 1194713 + -9.7 -2.83112 TCAGCCGTCACCGCG ACCCCTGATCACGC CTCA GCGTGA-CGGGGGC TATACTGACTTGCAT 61 18 COW1_RS05555 NONE COW1_RS05560 NONE COW1_RS05565 1199386 .. 1199396 + -5.4 -4.60041 TCGCTACGCTCGCAA TGAC ACG GTCA TTTTTACCCATGAGT 75 196 COW1_RS05585 NONE COW1_RS05600 NONE COW1_RS05605 NONE psd NONE suhB 1208485 .. 1208516 + -5.1 -2.62668 TACCTGTCGGGTTAC GCTGCGCTAACCCG ACCTA CGGATT-GCTCAGC CTTGATTCAATCATG 43 164 COW1_RS05620 1208926 .. 1208942 + -2.9 -5.5208 CCCATGTTTTATATG CCCGT TTCGCCT GCGGG TTTTTTGTGTTATAC 86 83 COW1_RS05625 1209432 .. 1209451 + -9.2 -3.06302 AACCTGCGGCCACAC CCGGCAGG GATG CCTGCCGC TTGCCTGACCGTCCT 64 89 COW1_RS05630 1210121 .. 1210167 + -4.3 -5.28778 ACGGAAAACACGGAC GATT-GCTTGCCGGCGCACGCGC TAC GCGCG-GCGCCGGAGAACTAAAA TTTTTTGTCCGTGCT 84 60 COW1_RS05660 1216324 .. 1216334 + -2.4 -4.58283 CCAATAATCGTCACC GGAG CGA CGCC TTTTTGCGCCACTTC 66 96 glgP 1219007 .. 1219041 + -10.6 -2.54523 CGCATCAGGATCCGC TGATGGGTTGCGGCGC AGG GCGCCTTCACCCATCC TACCTTCAGGTCTGG 62 75 glgB 1226115 .. 1226133 + -4.4 -2.94365 AGCGCGGAGCGCGTT GAACGTCC GCA GGACGGCC CTTTATGCCCTATGG 46 141 COW1_RS05690 NONE COW1_RS05695 1227806 .. 1227816 + -2.4 -4.07568 AGTGCATGGGTACAT CCGG GCC CAGG TTTTCCACCACCCAG 58 509 amrB NONE amrA 1230315 .. 1230348 + -2.3 -3.05343 TCGGGCAGTTCGCCT TGCGCAC-GCAGGGCT TCC AGCACTGCCGGGTCCA TCTTCACCCTCTGCG 41 298 COW1_RS05735 NONE COW1_RS05740 1234375 .. 1234392 + -6.2 -3.32343 TAGTTGTCAGGCAGC GTGCGG GGAAGG CCGCGC TTATCGCGGTCTGCA 54 38 COW1_RS05745 1235346 .. 1235358 + -6.2 -3.31144 CTGACGCTCGCTCAA CCGG CGGAC CCGG TTCTCGACCTGCACC 53 367 COW1_RS05875 1260378 .. 1260388 + -2.6 -3.50302 CTTTAGATAATGCGC TAAA GAA TTTA TGTATTTTATCGTCA 48 255 COW1_RS05970 1281437 .. 1281447 + -8.2 -2.78463 CAGCCGTTGCCGCTG CCGG CTG CCGG TCTGCTCGACAGCGT 52 304 flgA 1303611 .. 1303628 + -5.5 -3.53012 GGGTCGTGTCGCGCG GCGTCGT AAAA GTGACGC TTTAGCGACGGCGGG 55 3 flgM NONE COW1_RS06080 NONE COW1_RS06085 NONE COW1_RS06090 NONE COW1_RS06095 1307767 .. 1307816 + -4.8 -3.2794 TGAGATTCACCCCCT TGGGCACCACCGCCGCGCGGTG CTGATC CAGTTCACGGCGGTCGTTCTCA TTGATATCCATGGCA 49 498 COW1_RS06160 1320729 .. 1320739 + -2.4 -3.34233 CCTCCTCGGGCACCC CGCC CAC GGCC TTCTCCAGATTGTCG 44 434 COW1_RS06190 NONE COW1_RS06195 NONE COW1_RS06215 NONE COW1_RS06220 1331025 .. 1331042 + -6.2 -3.5774 GTATAATGGGCGATT GGCCGG AAACAC CCGGTC TTTCCAGGGTTGAGT 58 177 COW1_RS06225 1332066 .. 1332076 + -8.2 -4.07568 AGAACTTGAGCCAGG CGCC GAC GGCG TTTTCCAGCCGCGGA 72 238 greB 1336078 .. 1336097 + -7.8 -3.39895 GGCGCGCCCTCCTCC TCCAGCCG CTGA CGGGTGGA TTCGTTGATGCGACC 59 273 COW1_RS06265 NONE COW1_RS06270 1338635 .. 1338675 + -12.5 -2.53876 CGTCATTCCGGCGCA GGCCGGAATCCAGAAGCCG CCG TGGTCAATGGATTCCGGCC TGCCTTGGAATGACG 71 117 COW1_RS06275 1339585 .. 1339597 + -7.7 -3.28924 CGATTTCAGCACCGA CATCC ACT GGATG TTCTCGAACGGGGTC 56 397 COW1_RS06290 1342562 .. 1342578 + -2.1 -3.28712 GCCCCTGCACCACCT GGTGCAC GAA GCGCAGC TTCTCCAACGCCCGG 44 79 COW1_RS06300 1343974 .. 1344010 + -25.1 -3.53012 GCCACTGAGCGCCCG GCAGGCGGGGCGGACAG TCC CTGCCCGCCCCGCCCGC TTTCCCCCGCCCCGA 100 33 COW1_RS06305 1344401 .. 1344416 + -9 -3.21276 GTATGACGTAGATCG TGCACC CTCA GGTGCA TATTCTCCCCGCGAC 59 277 COW1_RS06315 1346673 .. 1346686 + -2.3 -2.50778 TAGCGGCACAGCAGA CAAGG AATC CCATG GGTTTTCGATTCTGG 38 38 COW1_RS06320 1348151 .. 1348169 + -6.6 -3.16742 GCATGTGCAGCAAGT CATGCCCG GGG TGGGCAGG TTCCTGGGAATTGAG 51 458 COW1_RS06330 NONE COW1_RS06335 NONE COW1_RS06340 NONE COW1_RS06345 NONE COW1_RS06350 NONE COW1_RS06355 NONE COW1_RS06360 NONE COW1_RS06365 NONE COW1_RS06370 NONE COW1_RS06375 1356761 .. 1356775 + -5.6 -2.63631 CGGGCGCGTCGGGAT ACGCCA TTC TGGCGA TAATATCAGCATTGA 44 471 COW1_RS06390 NONE COW1_RS06395 1359405 .. 1359418 + -9.5 -2.81133 TCCGCAACCAGGCGA GGCGG AATT CCGCC TATCATCAATAAGTC 61 179 COW1_RS06400 1360040 .. 1360074 + -15.1 -3.21806 ACAAGGCGCTCAAGC GGGACCGTCAAAAGCC TAGC GGCTTTTG-CGGCCCC TTAGCTCTTCGTTGA 87 7 COW1_RS06405 NONE COW1_RS06410 NONE COW1_RS06415 1362257 .. 1362310 + -2.8 -3.40403 TAACCGGTCGTTACA GCCGACCTCGGCGCTGTCGCGCCG CCTCGC CTGAGCTTCAGCGTCAAAGTCAGC TTCTGGTCGCGAAGC 47 38 COW1_RS06420 1363027 .. 1363047 + -11.8 -4.07568 GCCTCTAGCCGGAGA CGGCCGCC GTCGA GGCGGTCG TTTTCCGGCACAAAG 86 44 COW1_RS06425 NONE COW1_RS06430 NONE COW1_RS06435 1365042 .. 1365059 + -4.9 -4.08064 CATCAACTCGGAAGT GCAAAAGC GTC GCTTT-GC TTTTGCACGCCGGTT 62 71 COW1_RS06440 1365469 .. 1365486 + -5.5 -3.88438 TCCTAATTCTGGCTA TCGTAGG CATT CCTACGC TTCTATTTGGTATCA 61 186 COW1_RS06445 NONE COW1_RS06450 1367047 .. 1367070 + -3 -3.51924 TTCAGCGCCCGATTC GGCTTGCGCAG CCA CCGGGCA-GCC TTCTCTGCCTCACCC 49 137 COW1_RS06500 1376773 .. 1376786 + -6.7 -3.5882 CGTTGACCACACTGG TACCG TAAG CGGTA TTTGGCGATCGTCTA 58 287 COW1_RS06570 1405873 .. 1405886 + -2.3 -3.45849 CACGCATCTGGTGAC GCAGG GTTC CCTCC TTGTCGTGGTATCCG 46 389 COW1_RS06590 1409168 .. 1409181 + -3.1 -2.73554 AACATATTTTGTACA CAGACG TTG CG-CTG CTTCTGATTGCTTAA 41 87 COW1_RS06595 NONE COW1_RS06600 NONE COW1_RS06605 NONE COW1_RS06610 1416055 .. 1416065 + -2.4 -3.22091 GTAATGCGACCACGA GGGG TCT CCAC TTGATGGATTAACCT 44 183 COW1_RS06650 1425387 .. 1425397 + -8.2 -2.59971 AGGTTCAATTCCTTC CGGC CAC GCCG ATTGATCTCTAATCG 53 58 COW1_RS06660 1427063 .. 1427078 + -3.2 -3.07043 CCCGAGCCTGGAGCC GAACGA TGAA TCGTCC TCTTCACCTGATCGC 43 17 COW1_RS06665 1428196 .. 1428210 + -5.6 -3.14132 CACCGCCGGGATAAT GCGCTC CCT GAGCAC TTCGTCGAGCAGGCC 49 236 COW1_RS06680 1431217 .. 1431230 + -3.1 -3.27994 ACAGGTTGTGGTAAT GC-GTC AAT GACTGC TTGATATCCAATTCG 46 324 COW1_RS06690 1433593 .. 1433642 + -6.3 -3.49482 AGACACTGGATCCCC GCCTGCG-CGGGGATGACGCAG CGAAAGT CAGTGCCATCCCCGTCTCAGAC TATTTGATGATCTGA 58 245 COW1_RS06705 NONE COW1_RS06710 NONE COW1_RS06715 1438006 .. 1438018 + -2.6 -3.15544 TCAAGCTGCTGACGG TCGC GGCAG GCGG TTGATGCGGATCACC 41 9 COW1_RS06720 1439183 .. 1439194 + -7.2 -3.02511 CGGCGCGAAAATCCA CCGG CAGC CCGG TCTTCCAGGGCTGAG 51 356 COW1_RS06730 NONE COW1_RS06735 NONE COW1_RS06740 NONE COW1_RS06745 1444428 .. 1444447 + -2.8 -3.47431 CCGTTCCGGTTTCTG CGGCTG ACATGACC CAGCTG TTGATCTTTGCGTAT 47 14 COW1_RS06750 1445618 .. 1445636 + -5.3 -3.65812 CTGTACCGCCGCGGT GTCTTCCG CTGA CGGA-GAC TTCTGTTCACAGCGG 58 14 COW1_RS06755 1447260 .. 1447284 + -2.2 -3.31144 AAGCCCGAGATAGGC CAG-G-TAGGGA TTT TCCCTGTCGCTG TTGTCCAGGTCCCAC 44 518 COW1_RS06765 1449245 .. 1449261 + -4.4 -3.88291 ACCTGCACCATGCGG CGC-TCG CCGT CGAAGCG TTTGTAGCCGTGATA 58 251 COW1_RS06785 NONE COW1_RS06790 NONE COW1_RS06795 NONE COW1_RS06800 1456166 .. 1456194 + -11 -3.30124 GCGCCAGCCGGTAGA CCCGGT-C-GGCCG CCT CGGCCAGCGCCGGG TTGTGGGAAATGGCC 66 362 COW1_RS06845 1469590 .. 1469613 + -6.6 -3.63895 CCCGCCGGAGTACCG GCGAGCGGGCG CTC CGC-CGTGCGC TTTCACCTGCTTCAG 61 43 COW1_RS06855 1471513 .. 1471528 + -6 -2.73364 CGGCCGCTTCATGCC GGCCAG GCGG CAGGCC TGCTTGACATAGCCG 47 175 COW1_RS06865 1473004 .. 1473021 + -14.1 -4.96848 TCCGCCATATAAAAA GGGCCCC GGTT GGGGCCC TTTTTATATGGCGGA 100 316 mltF 1475551 .. 1475603 + -14.7 -3.36671 GCACCTCGCCGGCCG CGGCGGCGAGTTCGGCCTGCGCCAG GGC CTGGCGCATCCAGTATTCGTCGCGG TTATGCGATTCGGCT 80 417 COW1_RS06895 1477783 .. 1477795 + -3.3 -4.62783 CCATAGTCATCTGTG CTGCT TGC AGCTG TTTTTCCGATCAATG 69 35 COW1_RS06900 NONE COW1_RS06905 NONE COW1_RS06910 1480081 .. 1480096 + -7.6 -2.71731 ATATCCGGCCGCCAG TCGATC AGCA GATCGA TCGTTGAAGCATCCA 51 449 speD 1482564 .. 1482578 + -7 -2.82082 GGCGCTCACCCTCAG GGCGCG CTA CACGCC TGGTTGGTCATTGAT 51 248 COW1_RS06930 1483654 .. 1483671 + -9.8 -2.71364 ATGCCCACCGTGGCG CGCGCC AGCGCC GGCGCG TCGTTGACACCATCA 57 460 COW1_RS07160 1529144 .. 1529159 + -4.6 -2.63596 CGTAACCCGACACCC TCGCTG TGCG CAGCGC TGATCTGCGCTACCG 43 111 COW1_RS07165 1530078 .. 1530091 + -2.4 -3.68073 ATTGCCGCTGTAACT TTCC GCCAGG GGAA TTCTTGACTAGACTG 51 67 COW1_RS07170 1533867 .. 1533878 + -7.2 -3.14132 CGCTGCCCAGTGCAT GCGC AACA GCGC TTCGTGCGGCGAGGA 52 471 COW1_RS07190 1539588 .. 1539610 + -3.2 -2.64735 CGCTGGACGCGGGAC GGCTGGTCTG ATG CGCCCCGGCC TGGTGTCCCTGGCCT 40 15 COW1_RS07195 1542130 .. 1542174 + -15.1 -4.08216 AAGGTGGGAAAAAAA GGGGTCGGTGACAAAACGCAA TCA TTATCATTTGTCACCGACCCC TTTTAAAGAACATCA 100 59 epmB 1561177 .. 1561209 + -5.3 -3.69434 GGCAAGACCCCGCTG TGACGGCCACGCCGG CCG CCGGTGCAGACGGCA TTTCCCCTTCGTTGG 58 23 COW1_RS07300 1563366 .. 1563382 + -4.4 -3.23692 TGGCGGTAACGGCAT CCT-CCG GGAC CGGCAGG TTGGTGCTGATGCTG 49 257 COW1_RS07310 1566153 .. 1566207 + -12.9 -3.14931 GTAACCCATCGCTGT GGCGGCGGGT-G-ATGGGTTACGGCGC TAC GCGCCTTCACCCATCCTACTCGCTGCG TTAATGCCGCCTGCG 76 98 COW1_RS07325 NONE COW1_RS07330 NONE COW1_RS07335 1574814 .. 1574858 + -15.1 -4.48987 TCAATCATCCTAAAA GGGGTCGGTGACAAAACGCAA TCG TTCTCATTTGTCACCGACCCC TTTTAATTGTCGCGG 100 28 COW1_RS07340 1575001 .. 1575045 + -9.3 -3.93026 TCAATCATCCTAAAA GGGGTCGGTGAAAAAACGCAA TCG TTCTCATTTGTCACCGACCCC TTTAATTAAGATCTT 75 28 COW1_RS07420 NONE COW1_RS07425 NONE ispA NONE dxs NONE queD NONE COW1_RS07445 1604882 .. 1604904 + -7.6 -3.04461 CAGCCTCTTAACCTC AGCATGCCCG TTG CGGGCATGGA TCTTCGCAATCACTG 57 84 ettA 1616285 .. 1616326 + -7.3 -3.05596 GAAGGCGCTGCGGCG CCGTAACCCATCA-GGGGCG TCT CGTACAATGATGGGTTACGC TTCGCTCCACCCATC 54 268 COW1_RS07510 1617488 .. 1617523 + -6 -3.63336 AGATTCTGCATCGCA TTGCCCTCGGTTTCGG CGCC CCGCAACGGCGGGGAA TTTGCGATGCTATCT 58 218 COW1_RS07550 NONE COW1_RS07555 NONE COW1_RS07560 1628847 .. 1628858 + -7.2 -3.18264 ATCCAGAAGGATGAT CCGC GTGT GCGG TTGCTGGATCCCGGC 56 111 COW1_RS07565 1630324 .. 1630338 + -6.4 -3.21924 CTGGCGGATTACGCC TCGGAG AAT CTCTGA TCTTCTGCGGCATGA 54 11 COW1_RS07615 1644633 .. 1644650 + -14.1 -5.52986 GCCACCAACAAAAAA GCCCCGC TGAT GCGGGGC TTTTTTTGCTGCCGT 100 133 COW1_RS07630 1647388 .. 1647404 + -6.5 -3.40522 AGCATCGAATCATCC CCAACCC AGG GGCTTGG TTATGCTGGCACCCT 56 317 soxX NONE soxY NONE soxZ NONE soxA 1649633 .. 1649656 + -16.8 -5.64421 TGATCAGCCAATCAG CCCGGTTTGG TTCG CCAAACCGGG TTTTTTGTTTAAAAT 100 51 soxB 1651606 .. 1651623 + -14.1 -5.63517 TTCACGCACCGCAAA CGGCCGC ATCC GCGGCCG TTTTTTGTTTACAAG 100 54 COW1_RS07660 1653497 .. 1653519 + -11.3 -3.01712 CAGCTTGCGCAGTAG TCCCGCACGG ATCT CCG-GCGGGA TGTTGCGAACCCCAC 62 470 COW1_RS07710 1666441 .. 1666462 + -2.9 -3.57144 TCTCGCGCCAAGGCC TCAGGGTGGC AGA GCCGC-CAGA TTTCCCGATCCCGGC 49 314 COW1_RS07715 1669402 .. 1669417 + -6.8 -2.69151 GAGGCCTGTCAGTAG GCG-GGG AAA CCCGCGC TCATCTCTGCCCGGC 50 26 COW1_RS07720 NONE COW1_RS07775 NONE COW1_RS07780 NONE COW1_RS07785 1684951 .. 1684961 + -4.6 -3.53224 TTGGCGCGTTACTCG CGGG ATT CCTG TTTGGGCACCGGATC 53 127 COW1_RS07800 NONE COW1_RS07805 1687899 .. 1687914 + -4.8 -2.81272 GGGCATTGACATTTA GATAAT AACG ATTATC ATTTGCATCATGGTG 44 60 COW1_RS07810 1688741 .. 1688751 + -2.4 -3.14132 CATAGATCTTCGTGC CGCG GTC CACG TTCCTAGCGGCCGCC 42 504 COW1_RS07880 1699574 .. 1699591 + -6.9 -3.1505 GGTGATCAGCGCCTT GCCGAAG CTGG CCTCGGC TTCGTAGAGCATCCT 52 313 COW1_RS07970 1713735 .. 1713746 + -4.4 -3.90744 AGCAATCTGTTCTAT TCGA TTTA TCGA TTATTTGCCAACCCC 59 130 COW1_RS07975 NONE COW1_RS07980 NONE COW1_RS07985 NONE COW1_RS07990 1719984 .. 1720027 + -8.1 -5.38047 CCCGACACTCACGGC GGGAAGGTCGGGTTACGCCC TCTTC GGGC-TGACCCGACCTACGA TTTTTTATGTCACTC 100 184 COW1_RS08020 NONE COW1_RS08025 NONE COW1_RS08030 1731685 .. 1731726 + -7.1 -3.0362 CCATCGCCGTCCGGC GGCCGGGTGATGGAGTACG GCGC TGTGCGCCTTCACCCATCC TGTCTGCTATTTCCC 54 63 nadB NONE COW1_RS08135 1750945 .. 1750963 + -3.1 -4.12188 GTAGCGCCGCAGCTC GGTC-AGC ATCG GCTTGGCC TTTTCCAGGTAATAC 60 492 arsC NONE wrbA NONE COW1_RS08160 1753671 .. 1753709 + -10.2 -2.57931 GTCCGGACGGGCGCG CGCGGCCAGCAGCAGG CGGCCGC CCTGCTGCTGCACCCG GTTGTAGAGGGTGAA 57 426 purM NONE purN 1758839 .. 1758861 + -5.4 -3.87815 ATGTCGGATTACACC CTGCGGGCTG ATC CGACCTGCGG TTTATCCACATCGAA 61 270 COW1_RS08195 1759876 .. 1759894 + -8.8 -3.4072 CAGAATCTCCTGCAT CGCCGC GATGAAG GCGGCG TTCTCCTCCGGCGTG 64 138 COW1_RS08245 NONE COW1_RS08250 NONE COW1_RS08255 NONE COW1_RS08260 1769675 .. 1769701 + -10 -4.4715 GGGGGTGGTATAGCC GGACGCAGCGCC CCT GGCGTTGGGCCC TTTTATCAATTCCGC 88 28 kdsC NONE lptC NONE lptA NONE lptB NONE COW1_RS08285 NONE hpf NONE ptsN NONE hprK NONE rapZ NONE COW1_RS08310 NONE COW1_RS08315 NONE ptsP NONE mgtE 1780417 .. 1780460 + -3 -4.05446 TTCCTGCTGTGATTT CCA-CACAGGTTGGGCTGAGC CAC GCGAAGCCCAACCTACAATGG TTTGTCATTGCGAGC 58 29 COW1_RS08340 1783535 .. 1783545 + -4.6 -3.57144 ACGCGGGCCATTGTC GGGT TAC GCCC TTTCGGGCTAACCCG 53 111 COW1_RS08355 1786307 .. 1786318 + -2.2 -3.5362 GCGCGGCTGCCAGCC CGGT GATC ATCG TGTTTCTGGACATTG 48 389 COW1_RS08455 1809300 .. 1809310 + -2.4 -3.73775 GTGCAGCTCCGACAT GCAG GCC CAGC TTTGCTCCCGGTCCG 51 370 glgA 1822643 .. 1822654 + -7.2 -2.67209 ATTCTCTGTTTTCTC CGCG CCTC CGCG TCCTCTGCGTTGATG 50 232 ppc 1825727 .. 1825746 + -3.6 -2.65264 CGCATCCGACTGAGC GCAGAT CATGACAA ATCTGC TGCTCTGGCTACTCG 42 204 COW1_RS08525 1827003 .. 1827018 + -6.2 -4.1673 GAAGCGGGCGTGGAG TGGTTT TATG AAACCA TTTGTTCGCGCCTTC 69 143 metG 1831175 .. 1831186 + -3.6 -3.4252 CCCCGCCCCACCCGG CGGG CAGG CTCG TTATAATAGCTGGCG 49 59 rsxA NONE rsxB NONE rsxC NONE rsxD 1835108 .. 1835134 + -2.1 -3.12668 AAGTGAGCAGCTACC GCCACATCCTG CTCAC CGGGGTGCTGC TGTTCGCCTTTGCCG 41 35 rsxG NONE COW1_RS08570 1836742 .. 1836752 + -6.8 -3.75332 TCCAGGGCGAAGCGG CAGC CCA GCTG TTTCAGTTCCCGGAT 61 337 nth 1840124 .. 1840139 + -5.4 -3.39018 GTCGAAAGGCCCTAG TGGACT GATC GGTCCA TATTTACGATAATCC 53 26 COW1_RS08585 1840674 .. 1840702 + -2.9 -2.52543 CGGTGAAGGCAAGTG CGGCGGCAATCAG TAA CGGACTGACCCCG TGAGTTCGGCAACCT 39 10 COW1_RS08590 NONE COW1_RS08595 1842415 .. 1842437 + -2.6 -2.78384 GGACAGTACAGTATT TGCAGGGG TGCGCAT TCCCTGCC TGTCGTCACGCAACC 39 97 COW1_RS08600 1843539 .. 1843555 + -3 -3.81146 AGGCAGGCCGCCCAG T-GCAGC CATT GCTGCCA TTGTTCATTCAGGCC 56 497 COW1_RS08610 1845258 .. 1845283 + -16.1 -3.02947 GCGCTGCATGAAAAA AGCGGCCTCCG TCAC CGGAGGCCGCC TGTCTGTCGTCCCTG 88 30 COW1_RS08645 NONE COW1_RS08650 1853620 .. 1853632 + -6.2 -3.28447 AAGGTGGGAATGTCC GCCG CCATC CGGC TATTCTCCTCACTCC 54 201 COW1_RS08655 1854972 .. 1855002 + -10.5 -2.93348 CGCCCGTGCACATGC CGCTGCCGGCGATGA TGA TCG-CGCCGG-AGCG TATCCTGTTGATGGC 59 478 COW1_RS08665 NONE COW1_RS08670 1858269 .. 1858315 + -9.5 -4.26079 ACGGACAAGAGTAAA TGCTGTTCACGTTGCC-GGGCGC ATA GCGCCCTGGCAACGC-AGTAGGA TTTTCCGTGCTTTCC 83 78 COW1_RS08730 1874337 .. 1874349 + -6.2 -3.75153 CAGGATCAATGCATG CCGC GACCG GCGG TTTACATTGCAGACC 61 65 COW1_RS08735 1875026 .. 1875049 + -4.4 -2.76263 GGTCTAGCCTCATAA TGGGGTGCCT GTTC ATGCGCCCCC TCGTTGACTCATCGC 44 131 COW1_RS08740 1875514 .. 1875564 + -20 -3.53343 GGCCTTTTCCAATAA GGGGTCGGTGACAATTGATAGT ACGAATA ATTCTCAGTTGTCACCGACCCC TTTAAAAAAGGCATT 100 127 COW1_RS08800 1890235 .. 1890261 + -2.8 -4.57341 GGGGCGCAGGGGGCA TGGGGGGTCGCG CCA TGCTAGCCCGCA TTTTTCACCGCCCTT 69 5 COW1_RS08805 NONE COW1_RS08810 NONE COW1_RS08815 NONE COW1_RS08820 NONE pilV NONE COW1_RS08830 NONE COW1_RS08835 1895474 .. 1895488 + -6.4 -3.09933 GTCACCATCAACCGG TTGCCG CAA TGGCAA TTGCCTGGCTTGGCC 52 90 COW1_RS08840 NONE COW1_RS08845 NONE COW1_RS08850 1899904 .. 1899924 + -4.6 -3.29324 TCTCGGGGGCCGAGG CC-CCGGCG GTGA CGCCGATGG TTGCCTTTCCCTCGA 49 182 rpsT 1908229 .. 1908247 + -16 -4.28432 TTGCGCAAAAGAAAA GGCCGGTC ACT GACCGGCC TTTTGCGTTGGGGTT 100 60 ispB NONE COW1_RS08920 1913170 .. 1913200 + -11.9 -2.66235 AGAATTCCAGTCTAT CCGT-CATCCCCGC GAAG GCGGGGATCCACGG CTTGGTTGCTCTGTC 69 246 COW1_RS08935 NONE COW1_RS08940 1916876 .. 1916893 + -6.9 -2.98823 TCGACGAGCCGGGCT CGCGACG AATT CGTCCCG TGTATCTCCGCACGC 51 331 COW1_RS08990 NONE COW1_RS08995 1936752 .. 1936794 + -14.1 -2.86271 GCCGCCCCGACGCCG CGGC-GGCCCGGCCGACGGCC AGC GGCTGT-GGCCGCGCCAGACG TCCTTGTCGTCGGGA 71 512 COW1_RS09015 1939460 .. 1939478 + -6.1 -2.8055 TATGATAATCAGCGA GATGTAT ATTAA ATACATC TAATATTATCGAATC 49 107 COW1_RS09020 1940260 .. 1940294 + -11.2 -3.29144 CAGGGCATCAATCCG CCGTACCGGGCAGCAG CGC CTGCAGCCGGGCCCGG TTCTCCACCACCTGC 71 133 ispG 1942156 .. 1942166 + -4.6 -3.60419 GCGTGATCAGGGAAT TCGC ATG GCGG TTGTCATTTCCACCT 53 35 COW1_RS09065 NONE COW1_RS09070 NONE COW1_RS09075 1950203 .. 1950213 + -2.4 -2.54896 GCGACAAGCCCGGCA GCGG CGA CCAC TGAATTCAATACAGC 38 12 COW1_RS09080 1950701 .. 1950716 + -6 -5.28778 CCGCCCCCGGCAAAA CCCCGC AACT GCTGGG TTTTTTGTGCCTCCT 90 52 COW1_RS09085 1951989 .. 1952008 + -15 -4.44667 GCGAGCAAACCGCAA CGCCTCCC TTCG GGGAGGCG TTTGTTGTTGCAGCG 100 82 COW1_RS09090 1952422 .. 1952450 + -15.9 -3.89212 GGAGTTTATGCCCCC TTGCCGGGGCGCC GCC GGCGCCCCGCCGG TTTCCTGTCTCCCTG 100 46 COW1_RS09100 NONE COW1_RS09105 1955434 .. 1955465 + -15.2 -3.39936 TGCTATCGATAATAT TTCATGCCG-GGCGC AAA GCGCCTCGGCATGCA TTATGAAATTTCCGT 87 191 COW1_RS09120 NONE COW1_RS09125 1957922 .. 1957963 + -8.2 -2.80291 ACCCGACAGGTTCGA TGCCAATGTCGGGTTACGCCC TAT GGGC-TAACCCGACCT-G-CA TATGCTGGGATAATT 54 123 msrB 1959106 .. 1959151 + -8.3 -2.62171 GTAACCCGACAGCCC GCGGCATGTTGGGTTACGGTGC CAT GCACC-TAACCCAACCTACAGA ATCTTTGCGCCTCTG 53 129 COW1_RS09160 NONE COW1_RS09165 1966899 .. 1966953 + -9.3 -2.94099 ATAGCTGCGCATGTC TGCCCCCTCTGCTTCGGCAGGACGTCA GGA TAACGTCCTGCCCG-GAAG-GGAGGCA TATATCCTGCCAGAA 62 458 COW1_RS09180 NONE COW1_RS09185 1968955 .. 1969000 + -9.7 -3.01712 CCCGCGGCCGGAATA CCCTTGAGGGCGCATGTGCGCA GTC TGCACGC-TAAGCTCTCAAGGG TATTCCGGCCGCGGG 62 199 gloB 1971142 .. 1971159 + -6.9 -3.32343 GCGTAACCCGACACT CACGACG GCAA CGTCGGG TTATGCCCGTATCGG 56 108 COW1_RS09200 1971662 .. 1971702 + -4.8 -4.63486 CCCATCACGGCACTG GAGATCGCGATGGGTTGAGC TGC GCTTCACCCATC-CTA-CTC TTTTGTTACGCCACT 72 86 COW1_RS09210 1973535 .. 1973554 + -13.6 -3.02511 AACATGAGGCGAACA GGCAGGTG ATCA CACCTGCC TGTTACACGGCTGCC 79 34 COW1_RS09220 1974906 .. 1974938 + -24.1 -5.26875 GGTGCCCTCCTCCGG CGGCCGGCCCCGCGC CCT GCGCGGGGCCGGTCA TTTTTTGCTTGGCAG 100 54 COW1_RS09225 NONE COW1_RS09230 NONE COW1_RS09235 1977234 .. 1977271 + -3.3 -3.53091 AGGATACGGTCTCGC CCGCCGGC-GTGCCCG GGGCCGG CTGGCACTGGTGGTGG TTTCACCCAGGCCAT 49 85 COW1_RS09255 NONE COW1_RS09260 1984099 .. 1984135 + -8.5 -2.81045 ATCTCCTCGGCCACC GCGCCCTGTTCCTCGGC AGC GCTGGCGATCTGGGTGC TCATGTTGTGGATGG 54 228 COW1_RS09270 1987099 .. 1987133 + -17.1 -3.59979 TCGAATTCCTCCAGG TCCGAGGCCGGCGGC ACATC GCGTCCGGCCTCGGA TTTGCGCTCGAACAG 89 428 trmH NONE COW1_RS09285 1989044 .. 1989059 + -2.4 -4.07687 CTGACCGGTACAGGG CCTCGG AATC CCGGTG TTTTCCGGCCGGCCT 56 37 COW1_RS09290 1989350 .. 1989400 + -5 -4.31433 GACGAATAGGGCCGC CGCGCCCCGTTCCTGTTCCCGCCC GCG GGGCTGCAACCGGCCCCGGCCTCG TTTATTATCCCGATG 67 32 COW1_RS09295 NONE COW1_RS09300 1990541 .. 1990558 + -2.7 -3.15544 CTCATGGAGGCAGGT CTCGA CCAGTTCA TCGAG TTGCTCCAACTCCAG 44 101 COW1_RS09315 1993670 .. 1993712 + -6.2 -2.90194 GCCGGGACCTCCTGC TCGAGTTCGGCGGTTGTG CGACCTT CCCAGCTGCCGAAGCCGA TCTCCTTGAAACGAT 48 420 COW1_RS09330 1996419 .. 1996430 + -7.2 -2.95388 ACTCTGCGGCCTCTG CGCG CCTT CGCG TCTCTGCGTTGAATA 53 279 COW1_RS09340 2000294 .. 2000313 + -3.4 -2.57344 ACCACCTCCGCGGGC GCCTCCCC CACC GGCCAGGC CTTATAGCCGCCCTC 39 347 COW1_RS09355 2003060 .. 2003072 + -6.9 -2.87564 GAGCATAATTGACTC TGCGG CCT CCGCG TCTCTGCGCCCCTGC 53 86 argE NONE argA 2005855 .. 2005866 + -3 -3.75153 CGTGTCCTTTGTGGT GATT CTTT AATC TTTAACTTCGAAAAA 52 193 cpdA 2006756 .. 2006767 + -3.6 -2.94912 TAACTCTGCGATCTC TGCG CCTC CGCG TCTCTGCGTTGAACA 44 100 COW1_RS09375 2008272 .. 2008286 + -10 -4.65895 CCATCACCAGTGAGT CCGGAT GTC ATCCGG TTTTTGCATGCCACC 90 92 trxA 2020248 .. 2020298 + -3.2 -2.52676 TCGACAGCAACATCT GAACG-TG-CCGGCGGTCGTCC-GC AAAG GCTGGACGGCCGCCGAACGGCATGC TAGATTAACCGGATA 39 24 rho 2021830 .. 2021854 + -7.8 -2.78018 GGTTGGAGATTGCCA CGTCGCTGCG CTCCT CGCAATGACG TAATTAATCAGAGGT 54 149 COW1_RS09475 2032534 .. 2032546 + -3.3 -4.30978 TTTCTCGCGCCTTTG GCACG ATC CATGC TTTTCCTGGATTCCA 64 269 COW1_RS09480 2034022 .. 2034063 + -5.9 -3.1355 ATGAATCGGGTCAGA C-CCGGG-TCCGCGGAT TCATCCGGCC AGCCGCGGATCCCGGCG TTGGATGTCGATCAA 49 37 COW1_RS09550 NONE COW1_RS09555 NONE COW1_RS09595 2058003 .. 2058018 + -3.2 -3.53012 ACCGCAGAAGACTAA CATACC AGCC GGTTTG TTTAACAGCCCACGA 49 46 COW1_RS09600 NONE COW1_RS09605 2060883 .. 2060908 + -16.2 -5.40072 GACCCTCGTATACAG CAACGGCCCC GCTTCA GGGGCCGTTG TTTTTTTGCCCCCGA 100 52 COW1_RS09615 2062451 .. 2062487 + -13.8 -2.73681 ACGGGATTTCTGATC GACCCGT-CATGCCGGC GAAG GCCGGCATCCATGGGTC TGATTCGACTGGATC 76 226 COW1_RS09620 NONE COW1_RS09625 2066112 .. 2066124 + -4.7 -3.29144 CGATAGCCTGAACAT CCGCC CCT GGCTG TTATCGGGCCGATAC 49 244 COW1_RS09630 2067046 .. 2067060 + -3.4 -3.33492 GCTCCACCCATCCTA CGCACG ATC CGGGTG TTGTAGGATGGGTGC 47 61 COW1_RS09635 2068534 .. 2068546 + -2.6 -2.64616 GCCGCCCGCCCCAAC CGGG CCTGA TCCG TGCTCTCACTGCACC 38 17 COW1_RS09640 2068947 .. 2068974 + -11.2 -2.62184 ACTCAGCACGTAGGA TGGGTGGAGGCG CGTG CGCCGCAACCCA TCATGTGCCGACCAC 66 28 yrfG 2071506 .. 2071557 + -8.1 -3.08464 TAACCCGACATATAC CGCGATC-CACGTCGGGTTACGCCC TGAC GGGC-TAACCCGACCTACGATTCCG TTGCCTCCGTCATCC 57 48 COW1_RS09705 2079810 .. 2079828 + -3.1 -3.05596 ACCCATCGCATTGCC GGGTAAC GATGG GTTACGC TTCGCTCCACCCATC 43 213 COW1_RS09710 NONE COW1_RS09715 2081841 .. 2081852 + -4.4 -3.0094 ACTCACCCGACCTGC GGAT TTGC ATCC TGTATCTGCCTGACA 46 113 hemL NONE COW1_RS09725 2085350 .. 2085370 + -4.7 -3.14132 CGCTGCTGCGGATCG GC-GGCCT CCAGCC AGGCCTGC TTGGTGGCCAGCGGC 47 201 COW1_RS09750 2090652 .. 2090708 + -2.6 -5.4505 CTTCGCTGCGGCCTT CCTGCTGACCTGCTTTCCGGCGGCCGC TTTG GTGGCCGC-GGACTTCTTGCCGGCCGG TTTTTTCTTCACGAC 90 436 COW1_RS09760 2093437 .. 2093453 + -15.1 -5.26316 AGCAATCCGCAGGAA GGGGCGC ATC GCGCCCC TTTTTTGTGCCCTGC 100 41 COW1_RS09765 2095907 .. 2095927 + -16.9 -3.91402 TAGTCTTTTGATTCA GGGCCGGTA TAA TACCGGCCC TTTCCGTTTATCTGG 100 132 ppa 2096997 .. 2097010 + -8.1 -2.73364 CCAGCGTCATGGCCC GGACG TCAT CGTCC TGATTGAAATCGCGC 51 522 moaC 2098432 .. 2098457 + -7.5 -3.14344 TTCAGTTCGGCCAGG CGCT-CCGGCAG GGC CAGCTGGTAGCG TTCGTGCAGCGCCTG 54 368 COW1_RS09795 2099404 .. 2099433 + -23.7 -2.73364 CTGCCGGTCAACTGA CCCCGTTGCGGTC AGTT GACCGCAACGGGG TCATTGCGATGCCCG 100 26 COW1_RS09800 2101060 .. 2101084 + -4.2 -2.79183 TCCATGACCTCGTGC TCGTCCCCGG ACTCG TCGAGGATGA TCTCCTCGACATCCA 41 467 COW1_RS09810 NONE COW1_RS09815 2104574 .. 2104585 + -2.2 -3.64703 GAGCCGCCCAAACGC GGCA TTGA TGTC TTTACCTGACCGGGG 51 5 COW1_RS09835 NONE COW1_RS09840 2108940 .. 2108953 + -9.5 -3.29144 CCTTCGAGGAGCGTA CCCCG GTCC CGGGG TTCTAGGACCGGTCA 66 6 COW1_RS09850 2110509 .. 2110535 + -5 -5.40072 GGTTGAGTATCGTAG GATGGGTGAAGC CGG GCGAAACCCATC TTTTTTTCGGGAGCG 90 218 COW1_RS09870 2114387 .. 2114418 + -15.1 -2.52464 TAAGCCCCACCCTCA GCCCGGCGGC-GCC TCACC GGCCGCCGCCAGGC TGCCTTCCCCGCAAC 81 38 COW1_RS09885 2116829 .. 2116850 + -9.3 -2.53876 AAGCAGCCTCATCCC GGTAGGCCG CGAA CGGCCCGCC TCGGTTACAATAGCG 59 21 COW1_RS09890 2118838 .. 2118850 + -3.3 -2.72344 ATCAACCTGTTACAC CCCTG CGC CAGAG TGGTTGCAGATGCCG 41 89 COW1_RS09895 2119231 .. 2119264 + -19.6 -4.0257 TCGCCTGAAGCGGGA CAGCGCCGCGGACT CGTCGC AGCCCGCGGCGCTG TTATTCCTTTTTCAG 100 33 COW1_RS09905 2120131 .. 2120150 + -6.4 -3.13403 GAAAGGCCGTCTCTT CG-CGATCG TCG CGGTCGGCG TATTGCTCCCAGGCA 51 215 COW1_RS09930 2124195 .. 2124207 + -2.6 -3.91737 TCTCAGGTCTTTTTC CTGC GGCGG GCGG TCTTCTTTTTCTTCG 53 47 COW1_RS10010 2139612 .. 2139643 + -20.2 -3.35679 AAGAACCTAAAAAAA ACGGCCGGTAACGC TCAG GCGTTACCGGCCGC TTATACGTCAGACCG 100 279 COW1_RS10020 2142126 .. 2142164 + -5.1 -2.52464 GCCCGGAGAGGATCT GCGCGGTC-AGGCCGGCC CGGC GCCCGACCTCGACCGGGG TGAGTTGCGCCCGGC 44 132 COW1_RS10040 2149112 .. 2149165 + -15.9 -2.91681 CGGTTCCTGAGCTGT GCAGCTGCGCAGGTCGGGTTA-GCCC GCA GGGCGTAACCCGACGCGGGCCGCCGC TGTGTCGGGTTACGC 87 31 COW1_RS10055 NONE COW1_RS10060 2155775 .. 2155792 + -11.3 -3.0094 ATCACTTGACCGTCA TTCCCGC GAAG GCGGGAA TCTATGTGCCTCGGC 68 98 COW1_RS10070 NONE COW1_RS10080 2160715 .. 2160737 + -7.6 -3.72324 GACACCGCTGTAGGA TGGGTGGAGC GAA GCGCAACCCA TTGTTGGTCCGCATC 66 28 COW1_RS10140 2171338 .. 2171363 + -3.9 -2.78816 CATTGCAGCGAATGG GCCACTGACACG GCA CGCG-CACTGGC TATACTCCGGGATAC 43 146 COW1_RS10145 NONE COW1_RS10150 2172608 .. 2172621 + -8.1 -3.30771 ATTTTTATTTCTGTC CCTGC CAGA GCAGG TTGTAGCCGATCTCG 59 64 COW1_RS10165 NONE COW1_RS10170 2174316 .. 2174329 + -3.1 -3.05816 GTCCCCCGCCCGGCT CCG-GT TCA ACGCGG TTGCGTCCGGCCTCC 42 48 COW1_RS10200 2182768 .. 2182795 + -6.2 -3.50853 GCAGAAGGCCATATA CTGCTGTC-GGGC CTC GCCCTGATGGCCG TTGTCGTTGGCCCAG 56 132 COW1_RS10215 2184711 .. 2184723 + -9.1 -3.14132 CCCGCACAATTCATG GCGCT GAA AGCGC TTGATGACCGCACCG 59 195 COW1_RS10225 2186950 .. 2186975 + -8.9 -3.04144 TGCTGCGCCGCCCGC GCGCGGCC-GCC GGG GCCTGGCCGTGC TGTTCCGCCTGCGCG 55 204 COW1_RS10235 2189069 .. 2189118 + -19.3 -3.49618 TAGACCTTCCACAAA GGGGACAGCGACAACAGGCGCGG ATGC CCGTGCCTGTTGTCGCCCTCTCA TTCATTGTCTCGCGC 100 38 COW1_RS10240 NONE COW1_RS10245 2191094 .. 2191104 + -5.4 -3.31983 CACCGCTGGCACAAC TCAG GTT CTGA TTGATATGATCTGTG 51 48 COW1_RS10250 2191811 .. 2191836 + -4.8 -2.75382 CCGAGGCGGATGCAT TCA-TCCAGCGG ATGT CCGC-GGACTGA TCCTTCCATCCGGTC 44 0 COW1_RS10255 NONE COW1_RS10260 2193891 .. 2193902 + -7.2 -2.89564 CAATTGGACTCACAG CGGC ATCC GCCG TATCTGGCCTGACGC 53 2 COW1_RS10265 2194825 .. 2194846 + -14.5 -3.09933 GACTCAAAAAAAAAA GATCACCGC CTGA GCGGTGATC TTCGCTGGCTTGCAC 83 66 COW1_RS10280 2197195 .. 2197208 + -5.9 -3.01422 AGGGCGGACAGCAGC CGGGG CAGT CCCTG TAATTTCTCCCGATC 48 40 COW1_RS10285 2198842 .. 2198878 + -4.1 -3.53811 CCCTGGGCAATATCG CAGCCGGCCTCGCGCAG AAA CTGCGCCTGGTATGCCG TTTCCACGCCCTCGG 51 489 COW1_RS10305 2205394 .. 2205404 + -2.4 -3.27951 GCAAGACCTACAAGG AGGC ATT GCCA TGTTGTCATGGGCTG 44 143 COW1_RS10310 2205694 .. 2205712 + -4.5 -2.54999 ATTTACAGGCGCTCA ACCGATC CGCCT GATCGGC ATTGATCCCTTTGAT 43 145 COW1_RS10315 2207474 .. 2207495 + -2.1 -3.70902 TGCAGAGTGTGTTTG CCGGGCTCG AGTT CGACGCTGG TTTCGGTCTGCCCGC 51 283 COW1_RS10325 NONE COW1_RS10330 2209076 .. 2209106 + -6.7 -2.8805 GATATATCGAGTTCG GCG-AGGGGCCGGG CAAT CCCGTCCTCGACGC TCTGTCGGAAGTGGT 51 120 COW1_RS10340 2209693 .. 2209719 + -2.3 -3.89346 ACCCGCTGGCCACCG GC-TGC-CTGCTC AAC GACCAGCGCATGC TTTCTGCCGTAGCGG 54 67 COW1_RS10350 2211704 .. 2211749 + -8.1 -3.55444 CTCCGCGCCGGGTTC GGCCGGCGCGGCGTCCCGTC CATCACC GCCGGGG-GCGGCTTCGGCC TTTCCGGCCTCGGCC 60 357 COW1_RS10395 2218987 .. 2219005 + -3.8 -4.08144 GGGAACAGCTCGAGA TCGGCA GACTCCA TGCCGG TTTCTCATTACTGCC 60 489 COW1_RS10400 2220908 .. 2220922 + -4.2 -3.80625 TGAAGCTGATTCTCA GTTGTC ACC GACCAC TTTCAATTGTCACGA 57 403 COW1_RS10440 NONE COW1_RS10445 NONE COW1_RS10450 NONE COW1_RS10455 2233034 .. 2233044 + -4.6 -4.83615 ACCGCGGCGTTTAAC GCGC TTC GTGC TTTTTGTCCCGCCTG 76 102 COW1_RS10460 2234610 .. 2234666 + -8.6 -2.71791 CGGCGCAGGCCGGAA TCCAGTAGCCGCCG-CCGGTCGTGG ATCCCGGC CTGCGCCGGGATGGCGGCAGCTGGA ATTTCGCGCACGCGT 58 102 COW1_RS10465 2235266 .. 2235294 + -14.5 -3.05463 CAGCCTCAAGTAGGA TGGGTGGAGGCGC GGT GCGCCGCAACCCA TTGCCTGCAGGCCGT 83 28 lpxL NONE COW1_RS10480 NONE COW1_RS10485 2240542 .. 2240557 + -7.5 -3.60627 TGGAGGCAGTGCTGG CGCGG ATCGAA CCGCG TTTACCGTAGGATGG 60 0 COW1_RS10535 2251694 .. 2251749 + -13.1 -5.26316 CCCGTCTGCATACTC CATCGCCGGCCCCGCCGCGGGCCGACC GGCA GCGCGGCCCGCA-CGGCGCCGG-GCTG TTTTTTATGGAATAA 100 348 COW1_RS10540 NONE COW1_RS10545 2253227 .. 2253243 + -10.8 -5.86061 CGCGGAGACAGAAAA CGGGCC CTCGC GGCCCG TTTTTTTTGATGACG 100 53 COW1_RS10565 NONE COW1_RS10570 2259608 .. 2259621 + -3.7 -3.94773 GATCTGAATACAGAT CCCGC CACT GCGGA TTCATTTTTTCAATC 60 183 COW1_RS10720 2295336 .. 2295346 + -2.4 -3.3482 TTCCCCGGACGGTTC CGGC CTG GCCC TTGATTCCCGCCTTC 46 176 COW1_RS10725 2296482 .. 2296521 + -10.8 -2.54523 ACCCGACTTGCCGTG GGTGTGTCGGGTTACGCCT TGC AGGC-TAACCCGACCTACA TCACTTCAGCTCTCC 62 113 COW1_RS10745 NONE COW1_RS10750 2300310 .. 2300356 + -10.9 -3.14132 GGTTGGGCTGAACAG GGTGAAGCCCAACAAT-GGCTC GCCC GGGCCGGGTGTTGGGCTTCGCG TTGCTCAGCCCAACC 69 157 COW1_RS10775 NONE COW1_RS10780 NONE COW1_RS10785 NONE COW1_RS10790 NONE COW1_RS10795 NONE COW1_RS10800 2310124 .. 2310139 + -3.2 -3.82807 TGATATGATATTTCT GTCAGC CATG GCTTAC TTGTTGATCTGTTAT 55 170 COW1_RS10845 2315079 .. 2315089 + -3.2 -4.16016 TCCGTATTTCAGATA TTGG GTG CCAG TTTCTTGACAAGTGC 60 267 COW1_RS10855 NONE COW1_RS10860 NONE COW1_RS10865 NONE COW1_RS10870 NONE COW1_RS10875 NONE COW1_RS10880 2320442 .. 2320457 + -2.5 -4.7373 TGCGCCGAGATGTCA TTCGG ATGAAC CCGGA TTTTTCGTGAGGTGA 70 0 COW1_RS10885 NONE COW1_RS10890 2321405 .. 2321416 + -5.8 -4.08767 GGCTTCTCTGGAACG CGTG GAAG CACG TTTTCGCGGGGTCCA 64 99 COW1_RS10895 2322736 .. 2322752 + -10.8 -5.37043 CTCTCTCCCCCACCA GCCGGC CTTGA GCCGGC TTTTTTGTGTCCGGT 100 48 COW1_RS10900 NONE COW1_RS10905 NONE COW1_RS10910 2324629 .. 2324654 + -2.5 -3.10344 ATCCGGTTCGCCAGT CTTGTGCTGAT GCGG ATCGGCGAGAG TGTGTTCGGTGGGCG 41 315 COW1_RS10915 2325579 .. 2325596 + -5.5 -3.07816 TGCCGTCTCACCCCA CGGGTCG GCGA TGATCCG TTGGATCAGTCCCAG 47 516 COW1_RS10945 2329070 .. 2329081 + -2.2 -3.36878 GATGTCAAATTCAGC TGGT AACG ACCG TTGTCAGTCAGTACC 46 391 COW1_RS10990 2337965 .. 2337982 + -7.7 -3.35679 GAGATCCTGCCCTCG CGCGC-CA GCT TGAGCGCG TTCTCGGTCAGCGCC 59 221 COW1_RS11010 NONE COW1_RS11015 2344951 .. 2344987 + -19.5 -2.87647 TATGTGGGATTAAAA CGTAGGTTGGGCTGAGC AAC GCGAAGCCCAACCTACG TCTCGTATAGTGCCT 100 338 thiS 2347306 .. 2347318 + -2.6 -3.33737 ACGCAAAGGCGCAGA GGTC ACAAG GGCC TTCTCAAAATTCCTC 46 70 COW1_RS11030 NONE COW1_RS11035 2349649 .. 2349679 + -4.1 -4.53303 TTACAGGGCTTCCCC TCA-GCCCTGG-AAC CTA GTTACCAGGACCTGA TTTTATATACACATC 68 392 trmB 2351945 .. 2351968 + -3 -3.00797 GGTCTGCGGAGCCCG TCCCGG-GCCC GAG GGGCGCCCGAA ATTTATCAATTTAGA 42 114 COW1_RS11050 2352973 .. 2352991 + -13.1 -4.8048 ATCGCAACACGCAAA CCCCCGG CTGGT CCGGGGG TTTTTGCTGTAGGAC 100 52 COW1_RS11055 2354497 .. 2354535 + -20.5 -2.70932 TACCGGCATCCAGGG GTAGGTCGGGTTGCGCCC TGCC GGGC-TAACCCGACCTAC TGCTTGCGCAGGACG 100 51 COW1_RS11060 2356125 .. 2356141 + -2.2 -3.29471 GCAACCGGCGCAATT CCTGTG GCTCA TGCAGG TTGATGTCATAGAGC 44 453 COW1_RS11070 2357434 .. 2357453 + -2.1 -3.35867 CACCGCCGGCGGCAC TGCTGGA CAAAAT TCCACCA TTGCTTCACCCTTGA 46 52 COW1_RS11075 NONE COW1_RS11080 2359120 .. 2359132 + -6.9 -3.20991 TGGGTTACCGGCCTG CCGGC TGG GCTGG TTCGCTTGCCTTGCC 56 362 COW1_RS11130 2373803 .. 2373827 + -17.2 -5.61596 CCTCTCCCTGCCTTA TCCCCTCCCG TCCTC CGGGAGGGGA TTTTTTTGTGCGCCT 100 112 COW1_RS11135 2374846 .. 2374869 + -3 -3.33696 CGATGTGGCCGAAAC GGTCCGGAAC GGAG GATTCTGACC TTCGTTCACAGGGGA 47 4 COW1_RS11140 2376004 .. 2376032 + -5.1 -3.17763 CGATGGCAAAGCCGA CGTCGGCCTGG GACAGGG CCGGGGCGTCG TTGATGCCGTCTCCC 49 485 COW1_RS11150 2378702 .. 2378730 + -7.3 -3.14931 GACCGGCGGGGAGTA GGATGGGTGGAGC GCA GCGCAACCCATCA TTGATCCCGCATCGG 54 25 COW1_RS11155 NONE COW1_RS11160 2379966 .. 2379996 + -25.6 -3.85698 GATGAGAACGCAAAA GAAACGGGCGGGGT ACA ACCCCGCCCGTTTC TTTGTACAGCCGGGC 100 47 purE NONE COW1_RS11280 2403172 .. 2403222 + -3.2 -3.12351 AACGGATCCGTGAAG CGTTAAGCGTTAAGCGTTAAGCGT TAA GCGTTAAGCGTTAAGCGTTAAGCG TTAAGTATCGCAGGA 43 6 COW1_RS11285 2404371 .. 2404404 + -4.5 -3.79906 CTTTGCGCCTCTGTA CCCATAGGGCATAAA CGCC TTTGCGCCCTCTGCG TTGTTATCACCATAC 59 109 gorA 2406013 .. 2406028 + -6 -2.82623 AAGGCATGAAGACAC CGCTGG TCAG CCCGCG TCCTTGTGCCGCGGA 49 222 COW1_RS11300 2409231 .. 2409251 + -5.3 -2.76453 CCACGCACCGCCATG GCGACGGTG TAC TGCCGTCCC TGCTTGACCTTGTCG 47 192 COW1_RS11330 2416893 .. 2416907 + -5.8 -3.68704 ATTGATTTTCAAGTG TCATAA AAT TTATGA TTATTAGAATATTAT 58 196 COW1_RS11335 2420041 .. 2420077 + -11.5 -2.74144 GGTCGGGTTAGCGCA GCGTAACCCGACATGCC GCG GCCGCGTCGGGTTACAC CTTTCAGGCTAACCC 66 122 COW1_RS11340 2421090 .. 2421129 + -14.4 -2.6428 CCCGGCATTGCCCTG GCATGTTGGGTTACGGCGC GAA GCGCC-TAACCCAACCTAC ATTCATTCCGTGTTT 78 238 COW1_RS11345 2422177 .. 2422189 + -6.3 -2.58579 GCAGAACCTGTACTA TCAGA CGA TCTGA CTTCTGCGGCGTTAA 48 13 moaA 2423577 .. 2423596 + -5.8 -3.60234 CCGCAGCGCCGATAA TGG-CTGAT TGA ATCAGTCCA TTTACGGGTATATCC 55 248 pdxS NONE pdxT NONE COW1_RS11365 2425533 .. 2425553 + -2.5 -3.65671 GCTCGGCATCGGGGA TTTCGGC AATAAAC GCCGGGA TTGTCTATAGTTATC 51 14 COW1_RS11370 NONE COW1_RS11375 2427163 .. 2427210 + -3.2 -3.63515 GCAGGCGACGCAGTT CTGCATCAACCGGCCCAACTGCT GCA GGCTGT-GGGCCGGATCGCCCAG TTGTTCGGCATCCAG 53 157 COW1_RS11400 2432267 .. 2432281 + -7 -3.10012 GCAGAAGGGCTGCAG GCCCTG CGA CCGGGC TTCGATGATGGCCTT 52 336 COW1_RS11445 2440554 .. 2440567 + -3.7 -3.39842 CTCGATCAACTCGGA CAGGC GCAT GCCCG GTTTTATCTTCAGCT 49 223 COW1_RS11515 2456038 .. 2456048 + -6.8 -2.97365 AGAGGCCATTTTCTT CAGG AAC CCTG TGCTTATTCGTCATT 53 75 COW1_RS11520 NONE COW1_RS11525 NONE COW1_RS11530 NONE COW1_RS11535 2458144 .. 2458175 + -4.2 -2.89564 AGGGCTCACGGCCCG GCGCGGAGCCGC-CG GCA TGAGCGGCGCCGGAC TCTATGCCCTGGCCG 44 6 COW1_RS11540 NONE COW1_RS11545 NONE COW1_RS11550 NONE COW1_RS11555 2462787 .. 2462804 + -4.1 -3.17075 ACCGGCTCCGGCAGT CTC-GCCA CTA TGGCAGGG TTGCCTTGCCAAGGG 45 118 COW1_RS11560 2463886 .. 2463919 + -2.5 -2.58253 CGACAACCCGCGACA TGTTGGGTTACGGT ATTGCGC ACC-TGACCCAACC TACATTCCATTCTGT 38 116 COW1_RS11565 2465611 .. 2465630 + -2.1 -3.52805 CCGCCAATACGTAAA TCTGACCG ACAGG CGG-CAGG ATTATTTTTTGTTTT 47 430 plsY 2469553 .. 2469591 + -11.6 -3.17051 TTTTGTGATTGTTCC CCGAATGTTGGGCTTCGC GTT GCTCAGCCCAACCTACGG TGTTGATGGTCCGCC 69 118 rpsU NONE COW1_RS11610 2471603 .. 2471626 + -10.4 -3.01791 GGAACAAAAGGTAGA TCGGGTTAGCG CAG CG-TAACCCGA TATTGCCCGGAACGT 64 104 COW1_RS11615 2473618 .. 2473653 + -19.1 -3.21276 GATCGTTTGATTTTT TACCGTCGCCAAGCC CTCATC GGCTTGGCGACGGCA TATTGTAACCCGGAG 100 96 rpoD 2475561 .. 2475582 + -17.3 -5.7946 GCCCGCACCTCGAGA GGCGCCACC GCAA GGTGGCGCC TTTTTTTATTGCCCA 100 56 COW1_RS11625 2476881 .. 2476911 + -5.3 -4.07568 TGCGTCACTCGTGCA CCGTCCCAGTGGT AGGCG AGCAGTGGGCCGG TTTTGGGCAACGACA 64 119 COW1_RS11640 2478662 .. 2478705 + -8 -3.75629 CTCGCCACCCTGGCA GCGGGACGGC-GTTGAGCCTG CTC CAGACGCAACTGTCGCCCGGC TTTACATTCGACCTG 66 11 metH 2491479 .. 2491497 + -13.1 -5.4111 ACGGCCCAATGCGAA GCCCGCC CTTCC GGCGGGC TTTTTTATGGTTCTT 100 51 COW1_RS11685 2493980 .. 2493991 + -7.2 -2.58663 GCCTTCAACCATAGG CCCG ATGC CGGG ATTATCCCAATAAAT 50 317 COW1_RS11695 2494500 .. 2494517 + -14.1 -5.7946 GCGGCGCATGCCAAA CCCCGCC AACC GGCGGGG TTTTTTTATTGCCCG 100 54 COW1_RS11700 2495145 .. 2495199 + -21.6 -2.88249 TGTCAACGCAGAGAA CGCGGAGACGCAAAGGCGCAGAGA AATTCGA TTTCATTGCCTTTGCGTCTCCGCG TCTCTGCGCACTCTG 100 58 COW1_RS11705 2495788 .. 2495821 + -8.2 -2.70932 TGGAGCGAACCGGTA GGATGGG-TGCAGGCG CCTG CGCC-GCAACCCATCA TGCTTCCGCCCGGCC 54 25 COW1_RS11720 2498753 .. 2498784 + -2.8 -4.59773 AGCAAGCTTCGATAA CACAGGCCTGCGTG AGCA CACAACGGCCTGTC TTTTTCAAAATCAGA 69 106 COW1_RS11725 NONE COW1_RS11730 NONE COW1_RS11735 2501955 .. 2501968 + -3.7 -3.64915 GGACCCGTATCGAGC CGCTG CAAG CTGCG TTATCATTTCTCCCA 54 50 COW1_RS11740 NONE COW1_RS11745 2502658 .. 2502679 + -8.1 -3.10715 CAAGCCCTGACGCCG GCTGTC-GAT CTG ATCTGACAGC TTCCCTACTACTGGC 57 31 COW1_RS11750 2504009 .. 2504022 + -2.3 -2.83715 CGCCACCCGCCTGAA GCGGG AGAA TCTGC TATCCTGCTGATGAC 39 27 COW1_RS11755 2506141 .. 2506157 + -7.9 -3.25823 CATCGAAATGCACCC TGCCGCC ACG GGCGACA TTGGTATGGAAGACG 59 305 COW1_RS11765 2507173 .. 2507190 + -4.7 -2.52543 GGCTGGGAACCGCTC ACTCGCG CAGC CGCGGGA TGAGTTGAGCCAGGT 43 5 COW1_RS11795 2512014 .. 2512039 + -10.3 -2.62184 CCCGGACCATGGCCA GGCCGATGCCG TGCC CGGGAGCGGCC TCGTCTGCCCGCACC 57 168 COW1_RS11815 NONE COW1_RS11820 2516138 .. 2516167 + -8.5 -3.40403 GCGCTGCTCAGACCA TCGTCGTGCCCGCC CCG GGTGCGC-CGGCGA TTCTCATCGCAGGGC 64 51 hisB NONE hisH 2524369 .. 2524382 + -2.3 -3.53563 GGGATGGAAACTGAA GGAAC GACT GTGCC TTTACACCGCGGTCT 47 27 hisA NONE hisF 2526278 .. 2526292 + -2.1 -2.85351 CGAGGGCATCGAGGT G-AGGC TGTA GCCTGC TCTAATATCGGCAGA 39 16 hisI NONE COW1_RS11890 2527202 .. 2527225 + -3 -3.79906 AAGTAAGGTTGGATC ATCAGCGCCGC TGA GCGGCGG-GAG TTATTATGGGAATCA 55 35 COW1_RS11895 2527517 .. 2527533 + -3 -3.84712 ACACCTGAACCCCGC CAT-GCG TCCG CGCCATG TTTGATATCGGCTTC 55 84 tatB NONE tatC 2529190 .. 2529202 + -9.1 -3.16676 CGCACAGCCTCGCCG CCCTG CTT CAGGG TATTGAATTCCTCGA 59 435 COW1_RS11960 2541553 .. 2541566 + -6.7 -3.06183 GAAATCCTGTTGGCT GCCAT GAAT ATGGC TTGGGTACACATGCA 52 202 COW1_RS11970 2545568 .. 2545581 + -2.3 -2.78384 TGCGCAGGAACGCGA GATCC TGCT GGAAC TCTGATCCGCCACCA 39 7 COW1_RS11975 2546020 .. 2546048 + -2.4 -3.37975 CAGGATGGGTGAAGG CGTATGCGCCG CAACCCAT CGGAGCAT-CG TTATCCATGATGGGT 46 68 COW1_RS11980 NONE COW1_RS11985 2548090 .. 2548118 + -2.9 -4.07568 TGGTGTACGGCTAGC CAGCGGCGGCG CCTTCAA CGCCTCAGCGG TTTTGAACAACCCGG 58 27 COW1_RS11990 2549113 .. 2549160 + -10.6 -2.58677 CGTAACCCGACAGTG GCCGGCATGTTGGGTTACGGTGC CAT GCACC-TAACCCAACCTACACGC ATTAATCATTCTCTG 62 133 COW1_RS12015 2555077 .. 2555089 + -4.7 -2.62983 AGCAGCCCGGTGAAG CAGGC CGA GCCGG TCATCTGACCCTGCG 43 5 COW1_RS12020 NONE rsmB NONE COW1_RS12030 NONE COW1_RS12035 2560208 .. 2560220 + -2.6 -3.46602 CGGCATAGGCAGCGG CCGC ATCAA GTGG TTATACTCTAGGGCC 46 33 COW1_RS12040 2561805 .. 2561828 + -2.4 -4.46212 AACTCGCACCTGTGG CAAG-CGCCTA TCC TGCGCGCCTTG TTTTCTGCTCCACGA 64 178 trkA NONE COW1_RS12050 NONE COW1_RS12055 2565202 .. 2565212 + -2.4 -2.62184 CAGAATGGTCGGCAC CCCG AGG CCGG TGGTGTAGAGGAAGA 38 122 COW1_RS12065 NONE COW1_RS12070 2568527 .. 2568541 + -2.1 -3.37975 CAGCACCCTCATCAC GA-CCG GCCA CGGATC TTCTCCCTGATGCCT 46 1 COW1_RS12075 2569111 .. 2569124 + -2.3 -3.72576 CTGCATCAGGACCAC GGCGT TGTT GTGCC TTTCATCGCGCGCAG 51 71 COW1_RS12095 2571734 .. 2571748 + -5.6 -3.06796 AGCAGTGCTGAACCG TCAGCC GCC GGCGGA TTGACTCGGCTCCGG 49 30 COW1_RS12100 2572561 .. 2572580 + -15 -4.19735 ATCCGGGAGTACAAG GACCCGCG CTTG CGCGGGTC TTTCCTTTTCAGGAG 100 53 pip 2573908 .. 2573924 + -2.1 -2.64912 GCCACCGACAGTTTC GCCGACA AGC TGGGGGC CTTCTGAGTTGGAGG 38 2 COW1_RS12110 2574979 .. 2574991 + -4.7 -3.14132 TGCGCGGTTTGTCCT CGCGC CGG GCCCG TTCCTCGCGCCAGGC 47 482 COW1_RS12120 2576085 .. 2576100 + -6.8 -2.62184 CCCTGCAGCATCTCG TCGGCG CCCA TGCCGA TGATGTGACAGCCCA 47 215 prlC 2579809 .. 2579832 + -6.7 -4.83615 CCCTCCGGGCCGCCC TGCGG-GCGT TCAAC ACGCTCCGCG TTTTTGTCCCGCATC 82 339 ubiD 2581529 .. 2581562 + -8.9 -3.43492 CCGACGTCTGCCGCC GCATGTCGGGTTACGC TGC GC-TAACCCGACCTAC TTCTGCTGCATCTCC 64 86 COW1_RS12145 2584054 .. 2584086 + -6.3 -2.72379 ATCGCCAGCCGGCCG GCGGCCTGCAGCAGC ACCGG GTTGC-GC-GGCTGC TCCTTGAGCCATTCC 47 524 COW1_RS12170 2588713 .. 2588726 + -8.1 -3.62597 GCCGATGCCGGAAAC GGGCT GGAC AGCCC TTATTCCGGCCTACA 62 149 argH 2592453 .. 2592489 + -12.1 -3.21276 ATGCGGCAGCCCAGC TGGCGGATGCGGCCGAG GAA CTCGGCCGCCAGCGACA TGTTCTCGCAGGCCG 69 373 COW1_RS12200 2596125 .. 2596141 + -2.9 -2.62184 ACATTCCGGGACACA CGGATGT CAA ATTTCCG TCATCTGACACGCCC 40 98 COW1_RS12205 NONE COW1_RS12210 2600228 .. 2600240 + -6.3 -3.40403 TGCCAGCGTGACACT TCTGT CGT ACAGA TTGTCATAGGCCAGG 56 433 COW1_RS12220 2601396 .. 2601412 + -7.2 -3.36273 CGAGCATTGGCAACC GGCGTG AAAAA CGCGCC TTGATCTTGCGCCAG 56 342 COW1_RS12245 NONE lysA 2605649 .. 2605660 + -5.8 -3.14132 CCATTCACACTTTCC TGCC TGGG GGCA TTCGTGAAGCCCGCG 49 112 COW1_RS12255 2606775 .. 2606799 + -3.4 -3.61103 GTCAGCACCGAACCG GCCTGACGCGG ACAA CCG-GACCGGC TTTGAGGTAAGCTTG 49 20 dapF NONE COW1_RS12265 NONE xerC 2609331 .. 2609376 + -4.5 -3.04144 CCCATCATTCCCTGT GCCAGGCGATGGGTTATGGCGC GTG GCGCCTCCACCCATC-CTACGC TCTTACAACTGGGGC 47 67 hslV NONE hslU 2611533 .. 2611578 + -9 -2.61216 TCATTGCGAGCGCAG CGTGGCAATCTCGTACCG CAGAATCAAC CGGTTGGGGATTGCCGCG TCACTTCGTTCCTCG 57 101 COW1_RS12290 2612272 .. 2612311 + -12.2 -3.16117 AGGACGGATGGCCAC GGGGCGTCGGATTACGCCC TTC GGGC-TAATCCGACCTACC TGTTGCATTGAATCT 73 138 COW1_RS12300 2613614 .. 2613632 + -4.4 -3.20382 ATAATCACGAGGAGA CGGCATGG ATA CCCTGCAG TTCATCGATATCAAC 49 37 COW1_RS12305 2615811 .. 2615825 + -7 -2.78463 GCGCGTTGAGAAAGC CCCGCC TGC GGCTGG TATACTGCCCGGCAT 51 269 ubiE NONE COW1_RS12315 NONE COW1_RS12320 2617760 .. 2617800 + -5.4 -2.52464 CAACACGTTGCAGCC GCG-GCCTGTCGGGTTACGC TGC GC-TAACCCGACCTACACGC TGCGTTACAGACGCA 45 98 ubiB 2619577 .. 2619614 + -16.4 -2.74144 GGTCGGGTTAGCACA GCGTAACCCGACAGGC CACGGC GATTGTCGGGTTACGC CTTTCAGGCTAACCC 86 81 COW1_RS12355 NONE COW1_RS12360 NONE grxC NONE secB NONE COW1_RS12375 2628320 .. 2628333 + -5.9 -2.57468 CGGGAAGTCTGCGCC TGGGC CTCG GCCCG CTTGATGTCCTCGGG 46 92 glnK NONE COW1_RS12400 NONE COW1_RS12405 2633741 .. 2633760 + -16.4 -5.67063 TCAACCCCGGACCGA CGGGCGCC TCAT GGCGCCCG TTTTTTTATGATCAG 100 51 COW1_RS12410 2634591 .. 2634603 + -4.1 -4.18494 GGCACGAGCCACATG GCATG AAA TATGC TTTTGCCTGGCGATG 62 49 COW1_RS12415 2635791 .. 2635818 + -7.6 -3.01712 GCACAACGGGTAGGA TGGGTGGAGGCG CTTG CGCCGTAACCCA TCTTACGACCCGCCG 56 85 hemF NONE COW1_RS12425 2637335 .. 2637347 + -4.7 -3.19175 CTCACCACGTCGGCG GCCGC CCA GCGGG TTCGGTGTGTTCGGG 49 229 hemB NONE aroE 2640923 .. 2640940 + -9.1 -3.27525 GGCAGCAAACATGGC GCCG-GCC CCC GGCACGGC TTCGATTTGAACAGG 63 44 COW1_RS12475 NONE COW1_RS12480 2649067 .. 2649101 + -11.5 -3.01924 TGTCCGTGTCGGTTG CGCCGCTGGCGC-GC ACCTGAC GCAGCGCCAGCG-CG TATTCGCGCAGGATG 65 472 COW1_RS12495 2650505 .. 2650521 + -11.5 -2.73681 ACTGCAGCAACCGCT CGGCGGC GGC GTCGCCG TGGTTGGGATCGATA 62 426 COW1_RS12530 2659409 .. 2659426 + -5.5 -3.01712 CGGGTCCCGGGCCGA GACGTCT TCGA AGCCGTC TATTCCCGCGGCGCA 47 465 COW1_RS12540 NONE COW1_RS12545 NONE COW1_RS12550 2661970 .. 2662004 + -6.6 -4.96848 GCAATTCAAATAAAA TTCTCTAAACTTCC TAAATAT GGAAGTTTGTAGAA TTTTTATGTGCAGAC 86 337 COW1_RS12560 NONE COW1_RS12565 2663746 .. 2663765 + -2.8 -3.67597 CCTGCAGGTTGGACT TGAGCTTT TCCA ATAGCTCG TTGTTGGGTGCGACG 53 265 COW1_RS12655 NONE COW1_RS12660 2682869 .. 2682884 + -3.4 -3.6796 CCCTGAATATCAATA TTTATA TTTA TATAAA TTATTGGAGTCTATT 52 35 COW1_RS12665 NONE COW1_RS12670 2686024 .. 2686036 + -6.2 -3.64703 CGAGGCCCTGCGCCG GGCG GTGCG CGCC TTTCGCTAGGGCGGC 61 4 COW1_RS12675 2686659 .. 2686693 + -14.3 -3.88498 ACGAGCATTAATACC GTCTGCTGACCGCCCC GCCC GGGGCGGTCA-CGGCC TTTCCTGTCTCCCCA 100 30 dnaA 2694514 .. 2694533 + -4.8 -3.37796 TCCGCACACAGGCTC CCGAGGGG TTGT CCGCCCGG TTGTGGCTAATAACA 51 97 dnaN 2695742 .. 2695773 + -4.2 -3.02471 GAACCGCTACGTGGT CATGCCGATGCGGC TGTA GCCGCAACGGTGCC TGTCTGTGCTCCCGA 45 7 recF NONE gyrB 2699494 .. 2699510 + -5 -2.88663 CCTCGGCCAGGATCT CGGCCG CTGCC CTGCCG TCTGTGGCAATGGGT 44 158 COW1_RS12760 NONE COW1_RS12765 NONE COW1_RS12770 2706558 .. 2706568 + -2.4 -4.1399 CGCAAAGGCGCAGAG GCGC AAA GCGA TTTATATGTAAATGA 59 64 COW1_RS12775 2707920 .. 2707930 + -2.4 -4.62872 ATGCACTATACTGGT GCGG GAG CGGC TTTTTGCGCATTGAT 66 42 glnA 2709570 .. 2709590 + -14 -5.63517 TGACGCATGCAATCA CCCCGCTC CTCAT GAGCGGGG TTTTTTGTTTGAGGA 100 53 COW1_RS12785 2710760 .. 2710782 + -11.2 -5.08601 GCGACATGACAGTGA ACCCCGCTCG ATA TGAGCGGGGA TTTTTATTGAACTGA 100 94 COW1_RS12790 2711478 .. 2711491 + -4.5 -4.65895 CGCACTGACCACACG GCCTT TTAC AGGGC TTTTTCGCTCGGCAA 72 112 glnL NONE ntrC 2714202 .. 2714236 + -9.3 -3.33671 CGTTTGGGTATGATC GTCATTG-CGAGGCGC AATA GCGCCGCGGCAATCAC TTGTCGGATGAGTCT 67 103 trmL 2729874 .. 2729904 + -6.9 -2.62184 CGCTGGAGGGCAATG CGGGCAT-CGGCATG GAG CA-GCCGCATGCCGG TCGTGTCCAGAAACA 47 494 rep 2735301 .. 2735315 + -3.5 -3.03124 CAATCTGAAATCGAT GCTGT CCTGA GCAGC TGTTCCGCCGTCCGA 43 16 COW1_RS12905 2736083 .. 2736107 + -15 -5.52384 CCGGGCATGAAAAAA CCCCGCCGCGG TCAC CCG-GGCGGGG TTTTTTTCATGCCCG 100 43 COW1_RS12915 NONE COW1_RS12920 2737725 .. 2737735 + -2.4 -3.61103 CGATTCGCGCAGCGA AGGC AAG GCCA TTTAACATGGCCTTG 47 124 COW1_RS12925 2737964 .. 2738010 + -7.1 -3.14132 CGCCAATTCCATTGC CGCACCCTCGCG-ATTCCCGGC CCCT GCGGGGCGTTCGCCGGGCTGCG TTCGTCCCCCCGGAC 54 36 COW1_RS12940 2743276 .. 2743297 + -2.2 -4.60041 GCGTCTCGATGCCTG CGCAGTCGG GAAAG CCGAG-GCG TTTTTCCGCCTGAGT 70 292 COW1_RS12950 2745003 .. 2745016 + -3.1 -3.92143 GGGCTAACCCAACCT G-CCTG CTA CAGGGC TTTGTCCGGGTTTTC 55 150 COW1_RS12960 NONE COW1_RS12965 NONE COW1_RS12970 2748333 .. 2748346 + -3.1 -3.61398 ATGATTGTAATTCAC TGCTGC TTT GC-GCA TTCTTGCGCCAGAGG 49 78 COW1_RS12975 NONE COW1_RS12980 2750455 .. 2750469 + -7.8 -3.14344 GTCTACGATAAGACA GGCTTC GTA GAGGCC TTCCTGGCGGCCGTC 54 206 COW1_RS12995 2754584 .. 2754604 + -2.5 -2.97735 CGTCTCTAGGCGCGG CC-GCGCG ATAGGG CGCGTAGG TGTAGTATTTCGGTC 40 32 COW1_RS13015 2757019 .. 2757032 + -5.9 -3.6806 TCCTCTAGTTCATGG CTGCC GGTC GGCGG TTTCCATCAGTGTCT 58 33 COW1_RS13035 2759481 .. 2759502 + -2.1 -2.71712 GCCGCCCGTCCGGCA CTGCTCGAC CAGC GTCATGCGG ATTTCCCCACGGCCG 38 226 COW1_RS13080 2769784 .. 2769835 + -10.1 -2.5194 GTGCCTGAGTAAAAA AGGCCGCCCCCGGTGCAG-TGCC TGTGACTC GGCAGCTAC-CCGGGGGCGACCC GTTGATCAGTCATTA 62 470 COW1_RS13115 NONE COW1_RS13120 NONE rbbA NONE COW1_RS13130 2780543 .. 2780553 + -2.4 -3.87627 GGCGCTGACCGATCC CCCG GCC CTGG TATTTTGTATCAACG 54 203 uvrD 2784339 .. 2784367 + -14.5 -2.67973 TCCCCCCTAACCCCT GCCCCTCTCCCCC TGA GGGGGAGAGGGAA TGATATGGGTTGTCT 78 48 COW1_RS13150 2785075 .. 2785122 + -14.2 -3.32844 GCGAGGCGCGTAGCG CCGCGGCAATCTCGT-CCGGCGT GCT ATGGCGTTACGAGATTGCCGCGC TTCTCGCATAGAAGC 87 71 COW1_RS13160 2789527 .. 2789551 + -6.5 -3.53224 CACGCGCTGCTGAGG CGGTTCATA ACATTTG TATGAGCCG TTTCAGCGGCGGGTC 58 28 COW1_RS13165 NONE fetB 2791225 .. 2791262 + -6.9 -3.17392 TGCAGGCGCTTTGCG CCGTAACCCTTCAGGGC AGAC GGCATGATGGGTTACGC TTCGCTTCACCCATC 56 115 speA 2794227 .. 2794239 + -4.7 -3.15544 TGGGGTGGTGACGCT GCCGG CGA CAGGC TTCATCGGCCTGGGC 47 54 COW1_RS13185 NONE COW1_RS13190 2795618 .. 2795629 + -5.8 -2.70932 CTTGCTCATGGTGCG CCTC CTTC GAGG TCGTTGCGGGGCGGG 47 268 COW1_RS13240 2808063 .. 2808078 + -6 -2.91429 GCACCAGCGCCTGGC CGCCGC GATG GCGGGG TGATTCCTTTGCTGT 51 7 COW1_RS13245 2809818 .. 2809831 + -8.1 -2.75481 AGTCGCCGCTGCCGC TGCCG AAGA CGGCA TAGTTGCCGTTGACG 51 508 COW1_RS13325 2832834 .. 2832844 + -4.6 -3.78934 ATCCGCAGGCCGAAA CGGT TGA GCCG TTGTTCTAGAACAGG 56 6 COW1_RS13330 2833963 .. 2833982 + -2.8 -3.66732 GCGTGCCACGGAAGA TGAAC-GGG AAG CCCAGTACA TTGTTCACCTGGTTG 53 474 rimO 2839698 .. 2839736 + -16.1 -2.55213 GGACATAATACTATC AG-TCTGCTGCCCTGGCGC TGC GCGCC-GGGCAGCAGAACA TGCGTTGCATGCATG 84 75 COW1_RS13400 2846114 .. 2846124 + -2.6 -3.19602 GCTGATAATGCAAGA TTTT TGT AAAA TATTAATGTCAACAA 44 287 gmk 2846770 .. 2846785 + -8.2 -2.55015 CATGATCGCCGACCT GCTGGC ACCC GCCGGC TGAATTGGGTAGACT 53 7 rpoZ 2847175 .. 2847200 + -10.3 -2.58714 CCTATGATCCGAAGG CCGGTCTGCGC CTGC GCGCTTACCGG TGGGTTCGTATGACA 62 90 spoT 2849443 .. 2849490 + -10 -3.06183 GTCATTGCGAGCGAA GCGCGGCAATCTCCTGATGCGC AGGAAA GC-CGGTAG-AGATTGCCGCGC TTCGCTCGCAATGAC 66 58 COW1_RS13420 2850027 .. 2850037 + -3.2 -2.78384 GTCTGGCAGGAGCCA TTGC GCT GCAG TCTGATCGCAAGCGG 41 136 recG 2852310 .. 2852334 + -2.7 -3.28791 CATGCGATAATCCCC GGTCTTTGGTC CGA GTCCTGAGATC TTGTCCCACCCGCGT 44 71 COW1_RS13430 2852914 .. 2852930 + -2.2 -2.62263 TAGGTTGGGTGAAAC CTGGTG CAACC CATCGG TACTGTCCGGGCGAT 38 38 ubiA 2853893 .. 2853917 + -8.5 -2.82036 CGGGTGATGTCGCCG GAACCGCCAGG GCG CCTTGGGGTTC ATTTCGATGCTGTGT 58 34 COW1_RS13440 2854366 .. 2854400 + -2.8 -3.05384 CTTTCCGCTGGCAGG GGGCTGATG-CGTCGC TTCCT GCTCCGTCATC-GCCC TTCGGTCAGCCGCCG 43 19 COW1_RS13445 NONE COW1_RS13450 2856156 .. 2856188 + -13.4 -3.54424 GGTGTCGGTGCAGCG CAGCCGC-CGGCAGC GTCG GCTGTCGAGCGGCAG TTTCAGGCCGTGGGC 77 239 COW1_RS13460 NONE bioB NONE bioF NONE COW1_RS13475 NONE bioC NONE bioD 2861908 .. 2861926 + -6.1 -3.50449 ATCCGGGCGCCGCAA TATTAGC GAAGA GCTAATA TTATAAATTTATAAT 58 192 COW1_RS13490 NONE coxB NONE ctaD 2865511 .. 2865554 + -3.7 -4.52589 CGCAGCAACATCCGT CTGGCGTTGATCC-TGGCGC TGATC GCGCTGGGGGTCTTCGTCGG TTTTGTCTGGACCAC 68 123 COW1_RS13505 NONE COW1_RS13510 2867465 .. 2867479 + -3.4 -3.83026 CATGGAATGAAGGCG CCCTGT ATA GCCGGG TTTGATGTAAGCCAG 55 377 COW1_RS13520 NONE COW1_RS13525 NONE COW1_RS13530 2870194 .. 2870204 + -4.6 -3.05384 CGATACTGGAGCCTA GCGT TCT GCGC TTGGATCAGGGCGCA 47 320 ccoN NONE ccoO NONE COW1_RS13545 NONE ccoP 2873761 .. 2873817 + -14.5 -3.36878 GGCAGTAGCATCCGA TGAT-GCATCCGGCCGGCCGGC-GGCGG ACAG CCGTCAGCCGGG-GGCCGGGAGCCATCA TTATCCGTCCATGAC 87 33 ccoG NONE COW1_RS13560 2876069 .. 2876092 + -4.6 -2.73364 GCCCCGGAGAGTCCC TG-AGACAGGC GTT GCCTGTATCCA TCCTTCCGATAGCGC 44 23 COW1_RS13565 2878931 .. 2878985 + -9.4 -3.32698 GGAATCGGGAGTATT GCATGATAGATGGAATCCGCACTATT ACC AATAATACGGATTCCGTCTAACACAC TGTTATATGCCATGA 66 372 COW1_RS13570 2879351 .. 2879375 + -3.4 -3.50447 TGCTCCCTTCGGTCG CCGGACGCTCC TGAC GTCGCG-CCGG TTATGTGAGCGTTAG 49 56 COW1_RS13580 2881817 .. 2881829 + -7.7 -3.35679 TCAGAATTGGTTCCG CCTCA GTT TGAGG TTGTGAGTCCGGAGA 61 319 COW1_RS13585 2882975 .. 2882994 + -10 -3.18199 AACAAGGCGGCTAAG GCTGACGGC TTC GCCG-CAGC TTGCCTTGGCCGTTA 68 48 COW1_RS13590 2883471 .. 2883493 + -12.7 -4.58563 TTCGCGCCTTCGGCG CCGGACGCGC AAAC GCGCG-CCGG TTATTTTTATCGTTA 100 54 COW1_RS13595 2884686 .. 2884700 + -4.3 -4.41895 TGGCTGTCAGGTCAA GTTCA GGCGA TGAAC TTTTCCTTCCAGATT 68 251 COW1_RS13605 2886227 .. 2886248 + -2.1 -4.13648 GCTCCCTTCGGTCGC CGGACGCTCG TTC CTCGCG-CCG TTTATGTATGGCGTT 59 87 COW1_RS13610 2886862 .. 2886884 + -12.7 -3.35015 CCTCGCGGCCCTCCA CCGGACGCGC ATTC GCGCG-CCGG TTATGCAGTCGTTAA 79 73 COW1_RS13615 2887605 .. 2887619 + -5.6 -3.06831 TCAGCTTGGACGCTC CTTGCG TCG CGCCAG TTACCTGAACGTTAG 49 61 COW1_RS13620 NONE COW1_RS13625 2888886 .. 2888899 + -3.8 -2.89191 ACGTGTCCACTATTC GTGG GTAGGA CCAC TGTATAAAGATATGA 44 18 COW1_RS13630 2889607 .. 2889625 + -8.8 -3.61398 CTGCTTCTTGTCAGT TCGCGATC GAG GCTCGCGA TTCTTACACCCGCCC 66 251 COW1_RS13635 NONE COW1_RS13640 2890721 .. 2890736 + -11.8 -4.65263 GACAACAATAAAAAA GCCGCC CGCA GGCGGC TTTCTTTTGGGCGAT 100 136 COW1_RS13650 NONE COW1_RS13655 2893555 .. 2893565 + -2.4 -3.20953 TGACCTGGCGCTTTG ACCG GGT CGGG ATTTTGAGTTGTTGA 44 25 COW1_RS13660 2893863 .. 2893884 + -7.9 -2.80291 GCCTGATGACCGCCG GCTGACTCC TTTC GGAGGCGGC TATGATCAAGTGATT 54 35 COW1_RS13665 NONE COW1_RS13670 NONE COW1_RS13675 2894792 .. 2894804 + -7.7 -2.63644 CAATCGCCGCCAAGG GATGG CTT CCATC TAACTTCATGTTTTT 53 86 COW1_RS13680 2896467 .. 2896490 + -18.2 -3.8165 TCGTATCATTACGTC CCCGGCTACC GCCA GGTAGCCGGG TCTTCTTTTGTTGAG 100 80 COW1_RS13685 2897870 .. 2897880 + -4.6 -3.60098 GTTATATATATTGGC GCGC TAT GTGC TTTAGACTGGGGCGT 53 119 COW1_RS13690 NONE COW1_RS13695 NONE COW1_RS13700 2899948 .. 2899990 + -18.5 -2.64616 TCTTCTGATAAACTG ATCTGGCTCGGAC-CCGCCG ATTG TGGCGGCGTCCGGGCCAGAA TCATCTGAGTCAGCA 95 33 COW1_RS13705 NONE COW1_RS13710 NONE COW1_RS13715 2903808 .. 2903858 + -10.5 -2.78816 CGGCAAAACCGAAAA TCGCG-CCCAGTGGCGG--GGCCC AGTGCC GGTCCAGCCGCGACTGGGGCGCGA TGTCCTGGAAGATCA 57 97 COW1_RS13730 2905689 .. 2905730 + -18.7 -4.72272 CGGTGCGGCACCCCG GGCCGGGGCCTGTCCTTTC CATT GAGGGGGCAGGGTCCGGCC TTTTTCATGCCGCGC 100 91 COW1_RS13735 2906393 .. 2906417 + -3.3 -3.53012 TGCCGGTGTGGTCAG CGCCTCACGGG AAA CCTGCGCGCCG TTTCCACCCGGCCCG 49 338 ccoS 2909312 .. 2909341 + -22.3 -3.66999 CGGATCCCGCACACA CGAAAACGGCCCC GTTC GGGGCCGTTTTCG TTTCCGTGACTGCCT 100 185 COW1_RS13795 NONE COW1_RS13800 2917704 .. 2917714 + -4.6 -2.57132 GCTTACAGTTCGACG GGTG AAT CGCC ATTGTCCGGGACAGG 43 66 COW1_RS13805 2918621 .. 2918631 + -4.6 -2.71924 CCGGCATCAAGTCCG TGGC CTT GCCG GTTTCCGCGACGGTC 44 193 rsmD NONE coaD 2919798 .. 2919809 + -2.2 -2.92114 ACTGAAGGCGCGGCT CGGT TAAT ATCG CTTTCATCTGATATA 40 19 COW1_RS13820 2920161 .. 2920181 + -14 -4.52589 CGACGAAATCCTTAA CACCGGGC CTTCT GCCCGGTG TTTTGTATGCAACCC 100 66 COW1_RS13825 2921208 .. 2921231 + -16 -5.80248 GTTTATCCTGACACA CAGGGCGGCC GAAT GGCCGCCTTG TTTTTTTCTGTATTC 100 53 ggt 2923241 .. 2923254 + -2.3 -3.72324 TCCAGCACCGCCTTG ATGGC AGCT GCCAG TTGTTCATAGCGCTG 51 245 COW1_RS13840 2925696 .. 2925714 + -11 -2.55074 ATGCCGTAACGTATC CGTTCGCC GTC GGCGAATG TGAGTTCGACTTCGC 59 366 COW1_RS13865 2931977 .. 2931993 + -5.7 -4.07568 TGAAATAGATCTCCG GTTCGGC TTC GCCGGTC TTTTCCGCCAGCAGC 64 431 COW1_RS13875 2934326 .. 2934354 + -19.1 -3.07113 GCGTGACCAACCCAA TAAAAAACCCGGC ATG GCCGGGTTTTTTA TTGGGTCCGGTGATC 100 80 coaBC NONE dut 2937769 .. 2937822 + -15.5 -3.53012 CTCAGGCATGCCCTG CAGTCCGG-GGATGCG-GCCGCGCTGC GGGA GCAG-GCGGCGCGCATCCGCCAG-CTG TTTCCCGCGGCCAGC 88 392 COW1_RS13905 2940119 .. 2940133 + -10 -2.61582 GCGCCAGCGCCCAGG GAACCC TCG GGGTTC ATTATGGGTACCCTA 62 120 argB 2941478 .. 2941497 + -7.8 -3.35679 CCCGGCGGGTGTCCT GCTCGATC TCCT GTTCGAGC TTGTCGATCCGGCCC 59 384 COW1_RS13920 2943236 .. 2943248 + -4.7 -3.15544 GGATAGCCGAGCGCT CGCCG CGG CCGCG TTCCTGACGGTCGAG 47 438 xth NONE COW1_RS13935 2945364 .. 2945386 + -7.6 -4.19238 TAAAGAACTGTTTGC GGAAACGCAC GTC GAGCGCTTCC TTTTCGCCTTCGGGG 74 108 COW1_RS13970 2951820 .. 2951871 + -15.9 -4.37886 GCTTGCGGGGGGAGA GGGTCAG-GGTGAGG-GGGGGTCAG GCGT TTGCCCCCCCCCTCGCCTCTGCCCC TTTTATGCCCCCTGG 100 92 COW1_RS13975 2953537 .. 2953551 + -9.2 -3.57144 ACACGCGTTTCATCG CCGGGC CCT GCTCGG TTTCCACCTGCACGG 64 447 COW1_RS14045 2964672 .. 2964688 + -2.9 -2.60904 ACCAGTTGATGAAAG GAGACGT TAC ATGGCTC GTATTCTGATTGTGG 40 180 pilH NONE COW1_RS14055 2965676 .. 2965687 + -5.8 -3.85698 AAGACCAACCATCAA CCAG GATA CTGG TTTATCGAGGGCAGG 61 79 COW1_RS14060 NONE COW1_RS14065 NONE COW1_RS14070 NONE COW1_RS14075 NONE COW1_RS14080 2975797 .. 2975847 + -12.7 -4.36914 CCGAAAGAGCAAAAA GGGGTCGGTGACAAAAGAGAGTA ATTCG TATCATTATTTGTCACCGACCCC TTTTCTCACAAAAGA 93 55 COW1_RS14085 2978100 .. 2978113 + -9.5 -3.21593 CATGCCACGGGCTGT CCGGC GGAC GCCGG TCTTGTCCCGGGCTG 66 501 COW1_RS14095 NONE COW1_RS14100 2981156 .. 2981169 + -8.1 -2.71791 ACTGATCCGGGCGTC CGGCA CATG TGCCG CTTTGCCACAGCCCT 54 36 COW1_RS14105 2981827 .. 2981843 + -15.1 -6.09196 TCCTCCTTCATGATT GCCCCGC TTG GCGGGGC TTTTTTTGTTTTGGA 100 57 COW1_RS14130 2987371 .. 2987415 + -13.6 -2.57211 CGAGGCGCGAAGCGC CGTGGCAATCCCG-GTCGGCG GCTA TGCCGTTACGAGATTGCCACG CTTCTCCCACAGAAT 74 64 COW1_RS14135 2988232 .. 2988267 + -10.4 -4.67038 ATGCGTGACAGTCCA TGCGCCCT-GCGAGCCG GTA CGGCTGTCGAGGGTGCA TTTTCGTTTTACCGG 90 209 tkt 2990408 .. 2990444 + -5.9 -3.23598 TGCGAGCGAAGCGTG GCAATCTCGTAATGC GGCAGGA GCGGTAAGAGATTGC TTCGTCACTTCGTTC 51 65 gap 2991749 .. 2991780 + -8 -2.73159 GTGGTGGCTGGAAAA CGATTCGTCATGCC CGTG GGCATCGCAAATCG CTTTCAACAAATTAA 54 249 COW1_RS14150 2993014 .. 2993058 + -2.8 -3.30554 TCAGTGAGGTGTGAG GGGGTGAGGAGTAAAACCGGT CCCG GTCG-TCTCACGCCTCACTCC TTACTCCTTACTTCC 45 44 pyk NONE COW1_RS14160 2995774 .. 2995791 + -14.1 -5.43414 TCCCGGGACACGGAA GGGCGGC TGCG GCCGCCC TTTTTTGTGTCTGCT 100 51 COW1_RS14165 2996007 .. 2996062 + -11 -3.17319 GCCAGCCTTCGTTCC CGCGATTCGTAGGATGGGTGGAGGCGC CCT GCGCCGCAACCCAT-CACTGGCTCGCG TGTTGATGGGTTGCG 71 14 COW1_RS14175 NONE COW1_RS14180 2998033 .. 2998043 + -4 -3.91897 GGTATGGCGGGATCT TTTC GAG GAAA TTTGTGGCTGAAGGA 57 4 COW1_RS14205 3002493 .. 3002537 + -8.6 -2.70932 ATCATCAGGTGCTTC TGTTCGGG-ATGGCGGTCGCGG ATC TCGCG-CAGCCGTTCCTGGACA TGATTCACCGCGCCG 52 420 COW1_RS14215 3004841 .. 3004864 + -3.7 -3.01712 GTAGTTCGATCAGAC TGCCGGGCG GATAGA TGCCCAGCG TCTTGACCAGCAGGC 44 268 COW1_RS14260 3013088 .. 3013136 + -6.8 -3.18728 AGCTGCAGGATACAA GAGGCAGGATACAAGTCGGA TTGTCTGGT TCTTGCTTGTGTCCTGCATC TTGCCTCTTGCAACT 56 60 COW1_RS14265 3013885 .. 3013900 + -4.6 -3.12668 GACTGTAAACAGGGT CCCAGC ACGG GCTCGG TTCGATCTGCAGGTG 47 48 COW1_RS14270 3014169 .. 3014190 + -12.9 -3.10409 GACCGTGTCGTTCCC GGCCCCCGC GGCC GCGGGGGCA TTGCGTCCGTTGCTG 76 47 COW1_RS14275 3014971 .. 3014986 + -6 -3.06133 GGCGACCCAGTAGGC GGGCAG CGCG CCGCCC TTGAATACGGGCTTG 49 145 COW1_RS14285 3017019 .. 3017040 + -2.1 -2.89971 GCCGCGTCTGCGCAG TGCGCCGCG GGGG TGAGCCGCA TGTCCTATATCCTCG 40 10 COW1_RS14290 NONE COW1_RS14295 3018700 .. 3018716 + -7.2 -4.45068 GTGGTGGCTTTGGGG GCTGCC TTGGC GGCGGC TTTCTTCTTCGCGGT 77 452 COW1_RS14305 3023368 .. 3023386 + -10.2 -2.73364 CATTATTGGGTAAAC TGCGCGCC CAT GGCCCGCA TCCTTGCCGTCGGCA 63 140 COW1_RS14310 NONE COW1_RS14315 3025042 .. 3025069 + -7.6 -2.63301 GAGTGAGGAGTAGGA TGGGTGGAGGCG CTTG CGCCGTAACCCA TCGTCTCCGCCTGTG 53 475 djlA 3027354 .. 3027406 + -4.9 -4.45577 CGCTGCCATCAATAG TCGCGG-CGTGCGTCGGGTTACGCC TTGCC GGC-TAACCCGACCTACTATTGCGG TTTTGTGGCCTTTGT 70 141 rpe NONE COW1_RS14355 3030561 .. 3030581 + -3.4 -2.87463 TGCGAGCGAAGCGTG GCAAT-CTT CTAA AAGCATTGC TGTCTGGACGGGATT 42 89 COW1_RS14360 3032423 .. 3032456 + -17.5 -3.9398 TGGATACCATGATTA TTCCGTCATTCCCGC CTTC GCGGGAATGACGGCG TTTGTGGGGTTATGC 100 178 COW1_RS14365 3033204 .. 3033256 + -6.4 -3.29187 ACGGAAAAAATTCAT TGCTGCTTCTCTCATCGCCA-GGCGC GCA GCGCCCTGGCGATGACA-AACAAACA TTCCGTGTTTTCCGT 54 94 trpD NONE trpC 3035234 .. 3035265 + -18.8 -3.02324 CGGCCAGTTTCCCTT TACGTCATGCCCGC GCAG GCGGGCATGACGGA TATCATTTGGCTCCG 100 109 COW1_RS14385 3037166 .. 3037194 + -3 -3.41878 TGCCGTCATTCCGGC GCCGGCCGGGATC CAGA GACTGCGGC-GGC TTCTGGATTCCGGCC 47 91 COW1_RS14390 NONE speD 3038926 .. 3038957 + -8.6 -3.39327 TGGGAGAGAGCCGCT GCAGGTGGCCGTCC AGGT GGGCGATGACCTGC TTCTCGGTCTCGCCC 60 359 COW1_RS14405 3040123 .. 3040152 + -4.3 -5.81412 TGGTGGTTATACTTC GGCGTGGCGC CCCTCCCTCTT G-GCCACGCC TTTTTTTTGCCTGGA 100 304 rplM NONE rpsI 3041222 .. 3041245 + -10.2 -3.39288 GCGCTGATCGCGATC GGCTGCGGGC GTCT GTCCGCAACC TGTTCTTGGGGGATC 69 34 COW1_RS14420 3041331 .. 3041360 + -23.7 -3.86346 CCCCCAGCCAATAAA CGCGAAACCCGCC TTCT GGCGGGTTTCGCG TTTATGGGGGACTGG 100 30 COW1_RS14425 3042869 .. 3042895 + -5.3 -4.07568 TGCCGTTATTGACCC G-ACAACACACAG TAT CTG-GTGTTGTAC TTTTGCGACAGAAAA 64 207 COW1_RS14430 3044084 .. 3044101 + -14.1 -5.66684 TATGCAAGAGCTTGA CGGGGCC TTCG GGCCCCG TTTTTTTGTGCCTTG 100 57 COW1_RS14435 3048300 .. 3048310 + -8.2 -3.27994 TTATTATTGGAGAGA GCCG AAG CGGC TTCGTCTGGCCTTAA 59 78 ilvA 3051450 .. 3051467 + -7 -3.79787 CCGGGCGCGATCGCC GGCATC GATCGG GATGCC TTTACCTTCCTATAG 66 486 COW1_RS14485 3054711 .. 3054724 + -2.3 -3.18264 GCCGCGCTGCGTTTA TGCCC TTCC GGACA TTCGTCCATGACGGG 44 108 pepP NONE ubiH 3057364 .. 3057386 + -7.6 -2.71144 AGGGCATGCGTAGGA TGGGTGGAGC GCA GCGCAACCCA TCGTTCAGGCAGGTG 54 85 COW1_RS14500 3058651 .. 3058685 + -13 -3.72893 GATGGGTGAAGCGCA GCGCAACCCATC ATCCCGGTTGC GATGGGTTGCGC TTTGCTCCACCCATC 84 47 COW1_RS14505 3060171 .. 3060201 + -11.1 -2.59431 CTTTCCGTGGACAGA GGGGCGACGGTTT CCATT AACCCGTCGCGCC TGCATTATCGCCGCG 66 301 gcvT 3061454 .. 3061505 + -6.1 -3.46068 TCGCCTGGGCGCTAC GCGCC-CGGCGATG-ACAGAAAACAT TCA GTGTTTTCCGTGTATT-CCGTGGCGC TCTTTAAATTACACC 56 144 gcvH 3061994 .. 3062028 + -12.8 -2.64981 ATCATTGCCTGGCCG CGATGGGTTACGGCGC TGC GCGCCTTCACCCATCC TACATTTGAGAATCT 71 81 gcvPA 3063631 .. 3063651 + -2.4 -3.39742 CGTCGGCTTGCGCCC TGAGGGCC AACCC GGCCTGCG TCTTCATTATTTCTG 46 201 tpx 3064337 .. 3064382 + -9.7 -4.26079 AGCGTGTGGTTTGCA GAATATGTCGTTGCCG-GGCGC GTA GCGCCACGGCAATGATAAAAAC TTTTCCGTGCTTTCC 83 110 gcvPB 3065921 .. 3065937 + -3 -3.5393 CTGAATGTGGGCAAG CCGG-AT GGCA ATACCGG TTTCACCCGCCTGAT 49 37 COW1_RS14535 3066468 .. 3066507 + -13.6 -3.81339 CTGGTTCTGCAGGCG GCTTGTTGGGTTACGGCGC TGC GCGCC-TGACCCAACCTGC TTTGAATTGTCCGTG 93 216 COW1_RS14540 3067550 .. 3067577 + -21.4 -3.62597 TCGTCAAGCAACCAA CGTCATCCCCGC CTGC GCGGGGATGACG TTGTTCAACCGTGGC 100 42 COW1_RS14545 3070359 .. 3070396 + -3.3 -3.96148 CCCGACATCCCGCGG CAGCTTGTCGGGTTA-CG TTG CGCTAACCCGACCTACAG TTTCTCCTCCCACAC 58 83 COW1_RS14565 NONE COW1_RS14575 3075463 .. 3075477 + -2.7 -2.82516 TCTCGGAGGTGGACG CGGAG TGAAC CGCCG TCTGCTGCTGCGGGG 39 18 COW1_RS14580 NONE COW1_RS14585 NONE COW1_RS14590 3078993 .. 3079027 + -3.5 -2.52543 TGTCCGACTTCGGTA CA-ATGGCGGGCCT GACCGAGA AGGCCCGCCCCATG TCCCTTGCCGAAACT 39 125 COW1_RS14595 NONE COW1_RS14600 3081060 .. 3081090 + -4.6 -2.54801 GGAGAAAATCGTGAA AGTGGCGGCC ATATCTTCCCG GGCCGCCGCG CTATCTTTGCCCGTC 43 55 COW1_RS14605 3082028 .. 3082045 + -9.1 -3.22774 TATCAAGGCGCCGGT GGCGGTG TGAT CATCGCC TTCGTCGTCGCTATG 63 16 folA 3082530 .. 3082550 + -12.5 -2.79327 GGCGCGACTGACGTC GCCGCAGGG TGC CCCTGCGCC CTTTCACTGGAGTCC 73 30 COW1_RS14615 3083246 .. 3083267 + -17.3 -5.8187 CTGCACTGAGGTCTT GGCCCTCCC TTCG GGGAGGGCC TTTTTTTGTTGAGTG 100 77 COW1_RS14640 3087062 .. 3087072 + -5.4 -3.2048 CCCACCGGTCTAGAA TTGC GTC GCAA TTCCTCAAGTTTCGG 51 98 COW1_RS14645 3087561 .. 3087581 + -9.6 -3.65902 TCGAGGCGGCCATTT CCGCGAGC TTGTT GCGCGCGG TTTCGATCACCTGGG 68 253 COW1_RS14680 NONE COW1_RS14685 NONE COW1_RS14690 NONE COW1_RS14695 NONE COW1_RS14700 NONE COW1_RS14705 NONE COW1_RS14710 3103743 .. 3103757 + -5.6 -3.551 GAAATCGCGACGCAG CCCCTG CAG CAGGTG TTCTATCCGTTCGGA 54 109 COW1_RS14765 3113673 .. 3113686 + -5.2 -3.28984 TTGCTGCCCCCCCTG CGCG CACCGC CGCG TTCCTGATTCCGTTC 51 5 COW1_RS14770 NONE COW1_RS14775 NONE COW1_RS14780 3119483 .. 3119522 + -9.9 -3.29511 GCCTATCGCCGGGCG GCGTGAGCGGGCCCGGCG CGGGT TGCCGGGAACGCT-GCGC TTATCCCGGCCTGCG 66 20 gatC NONE gatA 3131831 .. 3131876 + -8.4 -2.89191 ATTTCAACGCAGAGA CGCAGAGG-CGCAAAGTCT TATACAAGT ATTCTTTGCGTCCTCTGCG TCTCTGCGCCTCTGC 59 55 gatB 3133545 .. 3133576 + -10.9 -2.59742 CTGGGTAGTCCGTAG GCCGGAATAAGGGC TGGAT GCCCGT-TTCCGGC ATTATCCGCGTTGCC 66 221 COW1_RS14850 3135153 .. 3135185 + -16.3 -3.2794 CGCGGAGCCGGGTAG GATGGGTGAAGGCGC CTG GCGCCGTAACCCATC TTCATGTACATGCCG 89 56 COW1_RS14890 NONE lolB NONE ispE 3144511 .. 3144522 + -2.2 -3.66356 GGCAGCGGACCGGAT GTGA ACCG TCGC TTTGCCATTGAACAT 51 22 COW1_RS14905 3144623 .. 3144647 + -19.3 -5.00616 AGCCAAACACATCAC CGGTCAGCGGC CGA GCCGCTGGCCG TTTTTTAACCGGCCG 100 36 COW1_RS14910 3145677 .. 3145689 + -9.1 -2.52896 TGGACTGACGCCGGA CAGGC CCG GCCTG TCCGTTACGGCCTCC 57 33 COW1_RS14915 NONE pth NONE ychF NONE COW1_RS14930 3148353 .. 3148367 + -4.2 -2.58544 GCTGGTCTGGGTTGC GCTACA TGG TGAAGC ATTGTGAAAATGCCC 42 107 COW1_RS14935 3148822 .. 3148837 + -2.6 -2.65491 GAGCGATAGATAAAT TATGAG TTAC TTCATA CTTGTCCTAGCATTT 38 28 COW1_RS14940 3149410 .. 3149426 + -15.1 -5.35222 TAGAAATATGTCCCT GCCCCGC AAT GCGGGGC TTTTTTATGCCTTTT 100 88 COW1_RS14945 3150358 .. 3150374 + -7.9 -2.74563 GAATGCGCACGACCA GGCAGGC ATG GCCTGCA TCGTTGGGCTATCCG 54 416 COW1_RS14955 3151547 .. 3151584 + -6.1 -3.65046 CTGACGATAGGATCC CGGCCATCGTCAGCTGC CCAT GCAGCCAATACTGGCCG TTATTCAGCTGGCGG 61 447 COW1_RS15050 3164583 .. 3164593 + -2.4 -3.88583 CCCTTTAATGAGGAC CGCG ATG CCCG TTTCTGAAGCGTTTC 53 62 COW1_RS15055 3165674 .. 3165692 + -10.2 -2.62184 AGCGTGCAGATCGGG CCGGCGCA GCC TGAGCCGG TGCTGTGCAAACACC 62 41 COW1_RS15060 3166491 .. 3166516 + -9.7 -2.94925 GCGGAAGGTGTAGGC TCAGGCGGGACG CAG CG-CCCGCATGA TGTGTCATCACGTCT 62 28 COW1_RS15065 3168125 .. 3168182 + -9.5 -2.83894 CGGGCGCTGGCCGAA CGGGCCGCCGGGGCGGCGCC-GTGATCC GCT GGTTCGCCGGCCACCCCACGGCGGCCAA TCTGCTGCTGATCCT 61 2 COW1_RS15070 NONE COW1_RS15075 3173053 .. 3173110 + -9.2 -3.64703 CCTCTCCCCGCTTGC GGGGAGAGGGCCAGGGTGAGGGGGTATAC AGC GCTTATCCCCTC---TTGGCCCTCACCCC TTTCCCTCAAGGGAG 72 80 COW1_RS15085 3175322 .. 3175336 + -7 -3.72576 ATCGCAACCCAGACG ACGGGC CAG GCCCGA TTTGGTCAGACCGGA 61 220 cas3 3178654 .. 3178673 + -4.9 -3.5393 CTCGGCCGAGGAGCA GCAGCCA TGAAGC TGGCCGC TTTCGAGGCCGTCGT 53 16 COW1_RS15105 NONE csx17 NONE cas7u NONE cas5u6u 3184560 .. 3184590 + -12.4 -2.87344 CTCCGGTCTCCTCCG GCCAGGGGCCGCCC GCC GCGCGGCCTTCGGC TCTGTGGACGGCGTC 71 480 cas1 NONE cas2 3186943 .. 3186954 + -5.8 -3.2964 ATTATTGCTGGGCTG CAGC GGGG GCTG TTATCCACGGCATTT 51 220 COW1_RS15145 NONE COW1_RS15150 NONE COW1_RS15155 NONE COW1_RS15160 3195681 .. 3195720 + -4.1 -2.62184 ATCTCGCCGAACAGT TCGAAGTCGTTGCCGGC AATGCC GCCGGTGACGATGCCGC TGCTGTCCACGAAGA 40 405 COW1_RS15175 3199857 .. 3199887 + -11.9 -3.41988 CAGTTGGCGATCTCC TCCGGGGCCGGC-AC CCG GTCGCCG-CCCCGGG TCTTCTTGCCTGGAA 70 392 COW1_RS15185 3202659 .. 3202682 + -6.7 -2.69921 CATACCGTTTCATCG CTGCAGCAT CCCGTT ATGCTGCCG TCACTTGTTGTACTT 48 181 COW1_RS15190 3207958 .. 3207968 + -6.8 -2.82933 CAGCGCAACCCATCG CGAC CCG GTCG TGTGATGGGTTACGG 51 80 hrpA 3214216 .. 3214228 + -4.8 -3.72576 CAGCGATTGCAGAAG GTGC GGCAG GCAC TTTCATAGAACCCGG 56 5 COW1_RS15210 3215357 .. 3215376 + -15 -4.48987 GACGGGGACGAAAAA GGGGTGGC AATT GCCACCCC TTTTGCTTGTCGGCG 100 62 COW1_RS15240 NONE COW1_RS15245 3222092 .. 3222109 + -14.1 -5.055 TTTTGTAATAGAAAA GGCCCGC TTGC GCGGGCC TTTTTTCAGCGTTGA 100 49 COW1_RS15255 3224467 .. 3224507 + -4.5 -2.87325 ACATGCGCCCGGAAG CCTC-GCCCGCCCGACGC TGACTT GCGTGCGGCGGGAAGCGG GTTGTTGTACGGGAT 46 109 COW1_RS15265 NONE COW1_RS15270 3226152 .. 3226189 + -13.3 -3.58343 TCGCGTAACCCATCA GGCCCGGCGGGCCGCGA TGGG TTGCGGCGCGTTGCGCC TTTACCCATCCTACC 83 79 COW1_RS15280 3228937 .. 3228953 + -5.7 -3.85698 TGCAGCAGACGACCC CGGCAGC GCC GCAGCTG TTTGTCCGGCCGCAA 60 373 COW1_RS15290 3231440 .. 3231458 + -6 -3.20723 CAGTGACTGTGCCGC CAGTATTC CCA GCATACTG TTGAGTTCGTCGACC 51 479 COW1_RS15310 3235235 .. 3235262 + -5.5 -3.57561 CGCTGCGACCGACTG CATCGGCCAGGC GTAGA GCC-GGCTGAGG TTTCCGGCATTGAGC 54 170 COW1_RS15330 NONE ptsP NONE COW1_RS15340 3241147 .. 3241167 + -14 -2.8382 CACATCCCTCCTGTC CCCGGGGT TGCAT ACCCCGGG CTTTGCGGTTATTTC 76 61 bfr 3241731 .. 3241747 + -10.8 -5.09895 CTCTGCCAAAAAAAA CGCGGG ACAAG CCCGCG TTTTTTCACTCAGTA 100 74 COW1_RS15375 NONE COW1_RS15380 NONE COW1_RS15385 NONE erpA 3249634 .. 3249667 + -22.5 -3.53091 TCGGCTTCTCCTGCC CGCGAAAGGGGCGCC CTCG GGCGCCCCTTTCGCA TTTCCGGAGCCCCGT 100 45 COW1_RS15395 3251303 .. 3251353 + -8.3 -2.52464 CGCAGACGATCAGTT CCGCTGC-ATCCTGTGCCGCGCGC AGTACG GC-CTCGGC-CAGGCTGGCGGCGG TCAGTTCCGCCAGGG 51 294 COW1_RS15410 3255257 .. 3255289 + -5.4 -4.72386 CGGAAACGGCAGCGG CTGCCCG-CCCCGGG CCGG TCCGGAGTCGGGCGA TTTTTCAGTGATTTC 79 72 COW1_RS15415 3257241 .. 3257269 + -4.6 -2.60244 CGGCAGCCATTGGTT GCATATAGAGCCG ACCT CGGGTCTGTA-GC TCAGTTGGTTAGAGC 43 91 COW1_RS15420 NONE COW1_RS15425 3257440 .. 3257479 + -9.4 -3.62046 TAGTCCTGCCAGTCA CCAGTCGCGAACAA GCACCAGCATAA ATGTTCGCGACTGG TTATTGGACCAGTGC 69 42 COW1_RS15430 3260524 .. 3260546 + -5.6 -2.58714 GAGGCTTGACCATAT AACACTCAAG CGG TTTGAGTGTG TGGGTTGGTCTCAAC 46 28 rrf 3260767 .. 3260793 + -20.2 -5.0916 GGCTTTAATCCCAAA CCCCGTGTCTGG AAC CCAGGCACGGGG TTTTTCTATTCAGAC 100 38 COW1_RS15440 3262192 .. 3262213 + -15.1 -5.60993 CTGCTTCGCGCAGAA GCGGCGGCC TTCG GGTCGCCGC TTTTTTTATGGCCGG 100 53 COW1_RS15445 3263037 .. 3263057 + -10.3 -3.17723 TTCGCCCCTTGTTCC GCCCCGGCT GCA GGCCGGTGC TTCCCTTCCGCATCC 68 139 birA NONE COW1_RS15455 NONE COW1_RS15460 NONE COW1_RS15465 3266166 .. 3266182 + -11.5 -2.5409 GCTGAGCTTCCACTG GCTGCCG AAG CGGCGGC TGGCTTCCAGGTTGT 61 170 lexA NONE COW1_RS15485 3270231 .. 3270274 + -14.6 -3.05384 GGTTAGCCCGTCAGG GCGTAACCCGACACGAC-ACG ATC CGCCGGCCTGTCGGGTTACGC TTCGCTAACCCGACC 83 134 COW1_RS15495 3272774 .. 3272795 + -11.6 -5.18355 CAGTTCCGTTCCGAA GGCCACAG TTCACT CTGTGGCC TTTTTCGTTTTTCGG 100 271 COW1_RS15500 3274002 .. 3274014 + -4.7 -3.29471 GAGATTGCCGTGGGT GTGCG GAC CGCCC TTGATCTCGTCGAGC 49 301 COW1_RS15510 3275484 .. 3275512 + -3.7 -4.37886 TGGGGCATAAAGGCT GCCCTTGCGGG CGTTCAA CGCGCAGGCGC TTTTGTCCGGCCTGC 65 140 COW1_RS15520 NONE COW1_RS15525 3277432 .. 3277449 + -6.9 -3.04144 AACTCGGGGAGTTCA GCCGCCA TATG TGACGGC TGTTCGGCCTGAGCC 54 12 COW1_RS15535 3279208 .. 3279223 + -3.2 -2.92668 ATGCGGGGCCCGGGT CCCG GAATTGCG CGGG TGTAGTTCAATGGTA 42 107 COW1_RS15540 3279344 .. 3279362 + -2.2 -2.52543 TGATCACCCCGCTCC GCGGTCTG CAT CCGGCAGC TGAATTCAAGCCCAT 38 76 COW1_RS15545 3279437 .. 3279449 + -6.3 -3.20901 CAGTTCAAATCTGGT TATGG GCT CCATA TTAAATTAGTAACCT 54 15 tuf 3280710 .. 3280755 + -5.3 -2.91593 ATCGAGTGAGGTGTA AGGAGTGAGACGTGAGGAGGG GATG TTCTCCTCACGCCTCGCTGAA ATTTATAGGGCAGTA 48 32 COW1_RS15555 NONE secE NONE nusG NONE rplK NONE rplA 3283223 .. 3283242 + -11.4 -3.96148 AGACTTTGTGGCACG CCGCTGTC TTCC GGCAGCGG TTTGTCGTCAAAGAC 85 87 rplJ 3283986 .. 3283998 + -6.2 -3.30007 GTTCAAAAATTTGAC GCCC CTTGC GGGC TTGTGGACAAGTATT 54 45 rplL 3284481 .. 3284508 + -6.2 -5.28414 ACCGGGGAAAGCTCC GGCTGGTGGC GAAACTGA GCTGCCGGCC TTTTTCTGTTTGTTG 90 99 rpoB NONE rpoC 3293134 .. 3293164 + -17.7 -4.67048 ATTGCGCGTCTTTCC CGACAGGCCGGGCA ACCA TGCC-GGCCTGTCG TTTATTTTCCGGTCG 100 107 rpsL NONE rpsG NONE fusA 3296268 .. 3296284 + -2.9 -2.62184 TAGAGACCAACAGAA CTGTAAC GAG GTAGCAG TCGTGTCCAAGGAAA 40 46 tuf 3297484 .. 3297529 + -5.3 -2.91593 ATCGAGTGAGGTGTA AGGAGTGAGACGTGAGGAGGG GATG TTCTCCTCACGCCTCGCTGAA ATTTATAGGGCAGTA 48 32 COW1_RS15620 NONE secE NONE nusG NONE rplK NONE rplA 3299997 .. 3300016 + -11.4 -3.96148 AGACTTTGTGGCACG CCGCTGTC TTCC GGCAGCGG TTTGTCGTCAAAGAC 85 87 rplJ 3300760 .. 3300772 + -6.2 -3.30007 GTTCAAAAATTTGAC GCCC CTTGC GGGC TTGTGGACAAGTATT 54 45 rplL 3301255 .. 3301282 + -6.2 -5.28414 ACCGGGGAAAGCTCC GGCTGGTGGC GAAACTGA GCTGCCGGCC TTTTTCTGTTTGTTG 90 99 rpoB NONE rpoC 3309908 .. 3309938 + -17.7 -4.67048 ATTGCGCGTCTTTCC CGACAGGCCGGGCA ACCA TGCC-GGCCTGTCG TTTATTTTCCGGTCG 100 107 rpsL NONE rpsG NONE fusA 3313042 .. 3313058 + -2.9 -2.62184 TAGAGACCAACAGAA CTGTAAC GAG GTAGCAG TCGTGTCCAAGGAAA 40 46 tuf 3314261 .. 3314317 + -17.9 -3.86346 GAGTAAGTTGTAATC CATTGCAGGAGCGGGCTCGCCCGCGAA CAC TTCGCGGCCAGGGCCGCTCCTGCAGAA TTTATAGGGCAGTAG 100 35 rpsJ NONE rplC NONE rplD NONE rplW NONE rplB 3317126 .. 3317144 + -6 -3.14211 TAAGTTTAAGGGGAT CTAAACGT GCC ACGTTCAG TTCGTAAAGGGCCGT 52 38 rpsS NONE rplV NONE rpsC NONE rplP NONE rpmC NONE rpsQ NONE rplN NONE rplX NONE rplE NONE rpsN NONE rpsH NONE rplF 3321985 .. 3322003 + -3 -3.31144 GGCGGCGGTCGGAAT CGTCGCTG GTG CAGAGAGG TTATCGAAATGGCAA 45 60 rplR NONE rpsE NONE rpmD NONE rplO NONE secY 3324875 .. 3324899 + -4.1 -3.76373 CAACCTCAAGGGGCA CGGTCGCAGCG GAC TGCTGCGCTAG TTTGGATATTCGGCG 54 1 rpmJ 3325080 .. 3325113 + -2.1 -5.5604 GGTACAGCGACCGGT ACTGGAGCCGGGCGC AGAC GCGTCCGGCGATTGA TTTTTTGTTCATTGC 85 44 rpsM NONE rpsK NONE rpsD NONE rpoA 3327658 .. 3327679 + -18.7 -3.66256 GATTGTATTATTGAC CGGGCGCGG ACTG CCGCGCCCG TATTTTCGGGATCTG 100 50 rplQ 3328128 .. 3328144 + -10.8 -5.50499 TGCGTGCACAGAAAA GCCGGG CCTGC CCCGGC TTTTTTTGCGTCTGA 100 51 COW1_RS15825 3329414 .. 3329436 + -4 -3.16564 CGCCCTCCGGCCCCA GGTCGATGAC CCA GTCGGCGGTC TTGATCACGTCCAGA 45 439 COW1_RS15835 3333611 .. 3333640 + -20.1 -2.78715 GACGGACGCCGCCGG GGGGGATTTGCCG GCGC CGGCGAATCCCCC TATGATGGGCAGCTT 100 41 ssb 3334288 .. 3334307 + -6.3 -4.07568 ATCCCGACTCCCGTA TCGCCGC CAGTTC GCGGCGC TTTTGCAGCAGCAGG 66 155 mraZ NONE rsmH NONE ftsL NONE COW1_RS15865 NONE COW1_RS15870 NONE COW1_RS15875 3341102 .. 3341114 + -5.5 -2.64616 GCCACGGCCGGGAGG GCGTC ACT GATGC TGCTCTGGCTGGCCG 46 16 COW1_RS15880 NONE COW1_RS15885 NONE ftsW NONE murG NONE murC 3347539 .. 3347569 + -4.4 -2.57132 GACGGGCAGACCGGA GCGGGGCGCGGCAC CAG GAGCCTGACCTCGC GTTATGCACAGCGCA 43 137 murB NONE COW1_RS15910 NONE COW1_RS15915 NONE ftsA 3351494 .. 3351526 + -5.4 -2.53263 TTCTAGTTACGCAGT CACGGGGTTCCCGG TCGGT CCGGGAGCGAAGTG TCACTTAACCATCAA 45 35 ftsZ 3352814 .. 3352828 + -3.4 -4.52345 TCCTCGAGCCGGGGG TGTCCG TTG CGGCCG TTTATTTAATGATGT 66 110 COW1_RS15930 3353987 .. 3354019 + -21.4 -3.54424 CTGCGTTCTCCCTCA CGCCAGCAGGCCCGC GTAT GCGGGCCTGCTG-CG TTTCCGGGGCTCAGC 100 46 COW1_RS15940 3355621 .. 3355658 + -6.7 -3.16564 GGCGTTCAACACGCT CCGCGCTTCTGCCCGGC CTGC GCCGGGATGACGGTCGG TTCCTGCGCTCCCGC 52 165 secA 3358540 .. 3358591 + -2.6 -2.79098 AAGCACGGACCAAAG CA-AGGTA-CT-GATTCCCGTCATTC CCGC GAA-GGCGGGAATCCAGATACCGCTG TGGTTACTGGATCCC 39 74 argJ NONE COW1_RS15955 NONE COW1_RS15960 3361640 .. 3361652 + -9.1 -3.86897 AGGGATTGTCTTCGG CCCAG CGG CTGGG TTTGTCGCAGGTGGG 71 328 COW1_RS15995 3368975 .. 3368989 + -4.2 -3.6502 CGGAAAAGGCGATGC TTGCGG CTG CTGCAG TTTGGATAAGCAGTA 54 245 sucC 3379531 .. 3379545 + -2.8 -3.14134 ATCCGACCTACGGGA GTTACA ACC TGGAAC TATATTCATGAGTAT 43 96 sucD NONE COW1_RS16050 3382154 .. 3382179 + -8.3 -3.07344 AAATTGGCTCCGTCA TTGCGA-GGCGC ACA GCGCCGTGGCAA TCTCTTGCCGACTGG 57 91 COW1_RS16055 3383017 .. 3383038 + -10.8 -3.33737 TACCATGATCTCCAG CGCCCCGG GGATTG CCGGGGTG TTCTGGAAATTCCTG 66 331 rluD NONE pgeF 3385675 .. 3385713 + -11 -3.57462 GTTCACGCCGCCACC CCGGGATTACTCCGCA CGCCCGC TGCGGTATGATCCCGG TTTCGCCGTAGAATA 74 248 COW1_RS16075 3386641 .. 3386684 + -9.6 -2.79952 CGACGCAGTCCGCGG TTCGTGTGTCGGGTTATGCCC TGC GGGC-TGATCCGACCTACGCA TCATTGACTTCATAT 61 132 COW1_RS16080 NONE def 3387842 .. 3387871 + -15.1 -3.28173 TAGACAATGCCGGCC TGTTG-CCCGGCGC GCA GCGTCGGGGCAACA TATTGATATTCTCAT 87 72 clpB 3391677 .. 3391697 + -11.8 -5.80817 CGCCAAGTCAGGCGT GCCCCGTG TCCCC CGCGGGGC TTTTTTTGTCTTGAG 100 326 COW1_RS16100 3392970 .. 3392983 + -5.3 -3.23869 CGGGTCGGTCCTCCT CAATG AAGT CATTG TGTTATACAGTCCTG 51 61 COW1_RS16105 3393307 .. 3393333 + -10.8 -4.10429 AGGGCCTGACCGTAG GATGGGTGGAGC GAA GCGCAACCCATC TTTTCCCGAGTGATT 82 32 pomA 3398829 .. 3398841 + -3.3 -2.71712 GGAAGAGCAGGAAGC GGCCT GAC AGGCG ATTTGAGGCCAGGGG 41 19 COW1_RS16135 NONE COW1_RS16140 3400746 .. 3400782 + -5.2 -3.56318 GGCAGGTTCGGGGCC TCCGCCTCG-C-GGAACT CAT AGTTCAAGATGAGGCGGG TCTTCTTGTTGAAGA 54 155 COW1_RS16155 NONE COW1_RS16160 3403932 .. 3403960 + -9.5 -2.90763 GTCCTGCAGGGCATC GGTTGGGCTGAAC GCG GTGAAGCCCGACC TGTATAGCATCTAAG 62 63 COW1_RS16170 3406403 .. 3406416 + -9.5 -4.36729 CACGCCAGCGCTGTC CCGGC GCGA GCCGG TTTTAACTTGTTGAT 83 97 COW1_RS16175 3406750 .. 3406782 + -16.3 -3.75933 ACTGAACCCCTTCGC CAGACCGGTCCGG TTCTGGT CCGGACCGGTCCG TTTCCTCCCGTATCT 100 36 aspS 3408893 .. 3408903 + -2.4 -3.4072 GTTCCGCGTCCCTGC TGCG TCC CGCC TTGTACTCGACCATC 46 211 COW1_RS16195 3413267 .. 3413283 + -2.2 -4.2573 AAGCGGTAGTGAAAT GCAGAG CAGCT CTGTGC TTTTCGCATTATTTG 62 99 ilvN 3413859 .. 3413873 + -10 -2.70932 AGGTAATCGCCAGGG CGCTGA TGA TCAGCG TCATTGCGAGGCGCG 63 44 ilvC 3415054 .. 3415069 + -11.8 -4.74103 CTGAGACAATCACAA GCGCCC CACG GGGCGC TTTTTACATTCGCAA 100 37 COW1_RS16210 NONE COW1_RS16215 NONE pssA 3416784 .. 3416795 + -5.8 -3.87075 ATAGCCTGAGCCGTC CAGG TGCT CCTG TTTCTGGGCGATGAT 60 277 COW1_RS16235 3420749 .. 3420768 + -4.4 -3.58726 CGCATTTCAGAGGTA GTGAAAAT ATAG ATTTTTAC TTATCTATAAAAAAC 53 73 COW1_RS16240 3421454 .. 3421468 + -3.5 -3.70902 GTCGTGACAATCCAG CGTTG CGTCC CGACG TTTCGATCTCAAAGG 52 86 COW1_RS16245 3422267 .. 3422289 + -6.8 -3.8512 TCTGAACGGCTTCAA CCGGGCCCCC GCT GCGGACCTGG TTCTTGTGCTGCGTC 66 186 COW1_RS16250 NONE COW1_RS16255 3424727 .. 3424753 + -7.1 -3.38046 CCGCCAGCCGGTGGA GGCGGCGGAGC AGTGA GCGCCGTCCCC TGTTTCGAGTCCGGG 58 10 rimI 3425256 .. 3425272 + -4.4 -2.52464 GCAAAGCGTAACCCA TCAGCGG GCAT CCGC-GA TGGGTTGCGGCGCCC 43 75 COW1_RS16265 3427242 .. 3427262 + -15.5 -5.64421 CTCTACTACTGACTT GAGGGATGC CAT GCATCCCTC TTTTTTATTTCCGGT 100 299 lptF NONE lptG 3443537 .. 3443550 + -8.1 -2.78816 CAGGAACAGCACGGC GCCTG CCAG CAGGC TGTCATACAGGATGG 51 433 COW1_RS16335 NONE COW1_RS16340 NONE COW1_RS16345 3444933 .. 3444969 + -15.1 -3.21395 AGACGAAGGGAGCGA CGCTGTCCGCGTCCTGC GGG GCAGGACGCAGGTGGTG TATTATACGCGGAGT 87 111 pcnB NONE folK NONE COW1_RS16365 NONE panB 3448472 .. 3448511 + -13.6 -3.72893 GTGGAAGCGCGTAGC GCTGCAACCCATCGGCATC ACG GGCGACGATGGGTTGC-GC TTTGCTCCACCCATC 88 146 COW1_RS16375 3449426 .. 3449450 + -3.6 -2.78712 AGGGCCTGAGGCCGA TTGCGCCATTC GGGA GGATGG-GCGA TAATTCCCTTCCCCA 43 32 COW1_RS16380 3449852 .. 3449869 + -6.3 -3.79251 CGGCCACGACATCCC CGTTCAGG TCG CCTGA-CG TTTGCTGGTCCCCTG 64 10 COW1_RS16385 NONE COW1_RS16390 3451300 .. 3451328 + -7.3 -3.53012 ACGAGTGGTGCTTTT TCAGGCGCAACCC GCA GGGCTGGGGCTGA TTTCCCGCCCAGCGG 60 244 COW1_RS16395 NONE COW1_RS16400 3453490 .. 3453522 + -14.2 -2.79796 GAAATGATCGATATT GCATTGCCGTGGCGC ATCG GCGCC-CGGCAATGA TGTAGTAAAGTCAGG 80 67 COW1_RS16415 3456251 .. 3456283 + -14.1 -2.58069 AGGAGTGAGGCGTAG GATGGGTGGAGGCGC GCA GCGCCGTAACCCATC GTCTTATCGTATAGC 78 33 pdhA NONE COW1_RS16430 3459788 .. 3459818 + -2 -3.08073 GCTCGCAAGGACGAC CAGA-GCAAG-TGC CGTGC GTATCTTGCATCTG TATCTTGCAACTGAT 41 205 COW1_RS16440 NONE COW1_RS16445 3463489 .. 3463499 + -8.2 -3.06261 ATTGAATAACCTTGG CGCC CTT GGCG TCTTGGCGGTTCACA 57 80 COW1_RS16450 3464759 .. 3464782 + -11.7 -2.57132 CGCCCTGCGTCTGCG CATCGCCGC GCGACG GCGGCGGTG ATTATAAAAGAGCGC 69 1 COW1_RS16460 NONE pstA NONE COW1_RS16470 NONE phoU 3472977 .. 3473004 + -5.4 -3.85539 ATACCGCCGTGGTTA CTGGATCCCCGC CTGC GCGGGGATGACG TTTAGTGTGGCTATA 61 141 COW1_RS16495 NONE COW1_RS16500 3478337 .. 3478371 + -12.8 -2.84098 CGTGTGCCGGTCGGG TGATGGGTTACGGCGC CGC GCGCCTTCACCCATCC TACTTGCTTAACCCG 73 78 COW1_RS16505 3480357 .. 3480384 + -12.7 -2.64794 GTAGGTCGGGTTAGC CCGCAGGGCGT AACCCG ACGCACTGCGG TCCTGTCGGGTTACG 71 52 grxD 3481054 .. 3481082 + -21.7 -5.66684 GGCTGACCACTGCGA CCACGCCCCCGGC TCC GCCGCGGGCGTGG TTTTTTTATGCCTTA 100 52 COW1_RS16520 3483167 .. 3483188 + -5.7 -3.72051 TATCGATATCGACAA CCCGGTCTG AAAC CGCGCCGGG TTTGACCTTATTCGC 58 16 petA NONE COW1_RS16530 NONE COW1_RS16535 3485992 .. 3486032 + -20.4 -4.65168 GACAGTACAGGTAAG GCCCCGGGCCGGTGGCGCG TGCG TGCGCC-CCGGCTCGGTGC TTTTTCAGGTATACT 100 53 sspA NONE COW1_RS16545 3487192 .. 3487216 + -12.1 -3.1372 AGTAAGCCTTCCCGC GGGGGCGGG GCGCTCA TCCGCCCCC TGTTCCTGCGCACTG 69 36 COW1_RS16555 3488820 .. 3488838 + -4.4 -4.1899 ACGTTCCGGGCCTTT GGCCCTCC ACC GGATGCCC TTTTCGCTGCGCTAC 64 55 COW1_RS16560 3489353 .. 3489369 + -3.7 -2.73483 ACGGTCAAGTTCGCA TGTGC AAAAAAC GCACA TGCTTGGACTCCGCT 43 45 COW1_RS16565 NONE COW1_RS16570 3490914 .. 3490925 + -2.2 -2.7186 CCTAACCAAGCGCCC CAGC CGAC GTTG TAGTTCCCCCGCTTT 39 36 COW1_RS16575 3492211 .. 3492234 + -2.2 -3.06715 ATCACGCAAACTACA CTGCGCTTCG TTTG CGCCGCACAG CTTTATCGTTATGTG 41 71 COW1_RS16580 NONE COW1_RS16585 NONE COW1_RS16590 NONE COW1_RS16595 3493873 .. 3493892 + -5 -2.87132 CTAACGCTCGACGAT TAGCGG GGCGTTAG CCGCTA TCTATGAACCCGAGC 46 101 COW1_RS16600 3494231 .. 3494243 + -3.3 -2.51966 CTGACAAGTCAGCCA GTCCG GCG TGGGC ATTGATGAGCTTTGA 39 37 COW1_RS16605 3495034 .. 3495053 + -10 -5.52384 TGGTCATATTTAAAA GCCTCGTT CATT AACGGGGC TTTTTTTGCTGAACA 100 46 COW1_RS16610 3495611 .. 3495625 + -8.5 -2.98823 GGCACTCCTTCAATT GCCGG CCCGC CCGGC TGTATGTGCCGGCCG 59 138 COW1_RS16615 3496260 .. 3496286 + -20.2 -4.04174 ACTCAAATGTGTCCG GGGCTGCACCGT CTG ACGGTGCGGCCC TTTCGTTGTGTCCGG 100 67 COW1_RS16620 NONE COW1_RS16625 3497727 .. 3497746 + -10.6 -3.28712 TGTGCGTCTGGCTGG CGCCGGCC ACCT GGCCGCCG TTGTAGAAGCCCAGC 66 489 COW1_RS16635 3499367 .. 3499410 + -5.1 -3.39216 GCTGTGGCTGCAGTG GCAGG-CCGCCCGGGGCCGG TGAAC CCGCTTCCCGTCGGGCTTGC GTTTTTGCCTGCGCG 51 4 COW1_RS16640 NONE COW1_RS16645 3501581 .. 3501606 + -5.9 -3.17763 TTGTAGTTCTTGCTG CAGGGCCGCCC TGAC GGGCAGCCGGG TTGGTGGGCTCTGAC 51 256 rsmI 3506713 .. 3506732 + -4.2 -3.9461 GCAGGATCAGTTCCA GTTCGTCG CCGA TGCCGAAC TTGTTCTTGACCGCC 59 437 COW1_RS16690 NONE tsaE 3511601 .. 3511613 + -3.3 -3.65425 TCCCAATGCCTTAGA CCGGT TTC ACAGG TTTGCCCTATATCCC 52 63 COW1_RS16700 NONE mutL NONE miaA 3515917 .. 3515932 + -4.6 -2.64155 GCTGTCGCGGGTGAC GCAGGA ACTG TCCGGC TGGATTTGAAAAAAG 43 1 hfq 3516411 .. 3516426 + -4.6 -2.76509 TGTCTGACTGTCACA GCGTCC TGCG GGGTGC GTTCCTTGTTTGAAC 44 34 hflX NONE hflK NONE hflC 3519911 .. 3519963 + -9.1 -2.52896 CGGGCGGTACCCAGG GCCG-CTGAACGCGGG-CCCGG-GCGC ACG GCGTGCCGGGTCCCGCGC-CGGTCGGA TGGATTGAACCGTCA 57 18 COW1_RS16735 3520147 .. 3520159 + -4.1 -3.09516 TCGGCCTGACGCTGC TGTAC TGG GTGCA TTGAGTCCTGCAACC 45 9 COW1_RS16740 NONE COW1_RS16745 3523017 .. 3523060 + -4.1 -2.90075 ACCCGACATGCCGCG GTATGT--GTCGGATTACGCAC TGC GTGC-TAATCCGACCTACGGAC TATACTTGCCGCCAC 44 95 COW1_RS16750 3524132 .. 3524161 + -25.1 -2.53382 GTGAGTGAAAAGCAA CGGGGCGGTACGC TGAT GCGTACCGCCCCG TCAGTTAAAAATACT 100 33 rnr NONE COW1_RS16765 3527441 .. 3527467 + -19.4 -5.4505 TTACGGGTACAGCCG CGCCGCGCGTCG TCT CGACGGGCGGCG TTTTTTATTCACGGC 100 45 rlmB 3528543 .. 3528570 + -7.6 -2.52464 CGTAGAATACACCGC CTTTCGGACCGC TGTG GCGGGCCGGAAC TCCCTTGCCGCACCG 53 58 rpsF NONE priB NONE rpsR NONE COW1_RS16790 NONE rplI 3531086 .. 3531123 + -16.1 -4.08706 GTTGCACCTCATGCC AACCCCCGGCCGCGGCC GCTT GTCCGTGGCCGGGGGGC TTTGTATGCTGGCAG 100 69 dnaB NONE alr 3533803 .. 3533815 + -3.4 -2.72344 GAAACGTCAAATCCG TGAC TGAGC GTCA TCATTAAGAATCAGC 41 183 COW1_RS16810 NONE COW1_RS16815 3536970 .. 3536985 + -4.6 -3.90316 TAGGGTCGGGGAAGA GCCTCC GGCT GCAGGC TATTTTTCCCGGCGT 59 38 radA 3541307 .. 3541329 + -6.3 -5.36441 TCTGCGTCCCCTGCG CCTTC-GCGC CTCT GCGTTGAAGG TTTTTTATATCGAAC 95 237 COW1_RS16845 3545933 .. 3545943 + -6.8 -2.90901 TCTGGCCGGCGGCCA GCTG ATC CAGC TATAATTCCCCCTGT 53 10 ffh 3547819 .. 3547831 + -3.4 -4.22309 GTTGTAAAGCTCGAC TCCA CCGAC TGGA TTGTTGTTGTTTTGT 60 366 rpsP 3548561 .. 3548585 + -7.8 -2.76492 GGCCAAACTGATCGA GCAGGACCGCG CCAG CGCGG-CCTGA ATTTCCGCTGCCTGA 54 1 rimM 3549096 .. 3549110 + -3.4 -3.28712 GGTCTGATCGAGGTC GACTGG GAC CCGGAC TTCTAGGCACCACCC 45 5 trmD NONE rplS 3550298 .. 3550322 + -15.7 -5.78622 CCGAGCTCACAGAGA CGCCATGCGGG TCA CTCGCGTGGCG TTTTTTTTGGAATGA 100 58 COW1_RS16875 NONE COW1_RS16880 3552714 .. 3552724 + -8.2 -2.98942 GGGGCTTGAAAAACC GGCC CGC GGCC TATATCTGCGCACCT 56 32 htpG NONE COW1_RS16890 NONE COW1_RS16895 3555954 .. 3555995 + -6.5 -3.0682 CAACAAACCGGGCGG CGATTGTTGGGTTACGGCGC TAC GCGCC-TAACCCAACCTACA TATATATCTGCTGCG 52 298 COW1_RS16910 3559281 .. 3559297 + -5.1 -3.36327 CGATCAGCCCCAGGC CGATGCT GCC GGTATCG TTGTCGATGGGGTGA 53 211 COW1_RS16920 3561536 .. 3561556 + -5.3 -3.21099 CAGTACATCGACAGC CTCAGCCTG GAG CAGGCCCAG TTCATCCTGGCCCAC 51 213 COW1_RS16930 3564037 .. 3564051 + -2.7 -3.63251 GTAAAGTTTTCCAGA CGCTC TGAGC GCGCG TTGTCGTTTGATGGT 47 320 COW1_RS16935 3565841 .. 3565855 + -8.5 -3.41051 GCATTCCTGGGCATC CGGCC GGACG GGCCG TTATACTGGAGATCA 64 92 trxA 3566378 .. 3566395 + -11.3 -3.06815 TCACTTCAGCCGTCA TTCCCGC GAAG GCGGGAA TCTATTGACCACAGT 69 130 COW1_RS16945 NONE COW1_RS16915 3558713 .. 3558733 - -10.3 -2.55544 TGATCATCGAACTGA CCGACCGCC CGG GCCGGCCGG TGGTGCTGATCGAAC 57 499 COW1_RS16905 NONE COW1_RS16900 3555727 .. 3555739 - -4.1 -4.81249 GCGCAAAGCGAAAAA TCCTG CCT CAAGA TGCAGGTTGGGTTAG 75 337 ccsA NONE COW1_RS16835 3542365 .. 3542376 - -4.4 -4.2828 CCGGACGGATGAAAA TTCC AATG GGAA TCACGTGCCTGGCAG 67 199 COW1_RS16830 3541344 .. 3541360 - -4.3 -3.12351 GTTTTTTATATCGAA CCGCCTA ACC CAGGCTG GCCAGTTCGCGTTCG 45 13 COW1_RS16820 3536528 .. 3536542 - -4.2 -3.75024 TCGCACCAGCAACAA GCCC TTCTTCT GGGC GACCCTGCAGCCGAC 54 468 COW1_RS16755 3524128 .. 3524165 - -19.9 -4.18018 GGCGGTGAGTGAAAA GCAACGGGGCGGTACGC TGAT GCGTACCGCCCCGTCAG TTAAAAATACTTTTG 100 89 queG NONE yegQ 3506211 .. 3506229 - -7.3 -3.34398 GCTGCCGGTCAAACA GGCCGCG GCAAT CGCCGCC GAGATCACCGGCGAG 54 333 COW1_RS16670 NONE COW1_RS16665 NONE COW1_RS16660 NONE COW1_RS16655 NONE COW1_RS16650 3501248 .. 3501258 - -6.8 -3.4072 GACGCTGGAGGAGAA GCAG GTG CTGC TGGATCTGGGGATTG 56 121 COW1_RS16630 3497246 .. 3497256 - -8.2 -2.6544 CACGACAATATCAAG CGGG TCG CCCG GAACTGACCTTCTGG 53 47 COW1_RS16550 3487091 .. 3487130 - -9.8 -3.18737 CAACGAGGACGAATA CGGCCCCGAGCCGCCCGAC GGC GGCGGT-GGCCCGGAGCAG GACAAGTCCGACGAC 62 60 COW1_RS16515 3480982 .. 3481010 - -10.1 -2.73468 GAAGATGGTCAAGGA GGCCGTGGCCGGC AAG GCCGGGCAGGGCG ACTCCGCCGCCCAGT 63 110 COW1_RS16490 3475406 .. 3475425 - -12.1 -4.89567 CTTGAAAATAGAAAA GGCCCGG GCAAAG CCGGGCC TCTGCGGGTGGATCA 100 55 COW1_RS16485 NONE argF 3473066 .. 3473079 - -3.7 -2.52464 CCGCTTTCTAACTCA GCAGG AATT CCAGC AGCGCCTTCTGGGCG 41 4 ppk1 3464744 .. 3464776 - -6.2 -3.30701 CTTCATCAAACTCAA CGCCCT-GCGTCTGCG CAT CGCCG-CGCGACGGCG GCGGTGATTATAAAA 54 259 pyrC 3455851 .. 3455861 - -2.4 -3.85698 GTGGCGGCGGACAAA CCGG TGG CGGG ACTGGAGACGGCCGC 54 490 rnt 3454388 .. 3454419 - -21 -3.16191 GGAGACCCTGATCAA TCCGTCATCCCGGC CTGC GCCGGGATGACGAA AAGTGCGCCGGTATG 100 179 COW1_RS16405 3453293 .. 3453311 - -8.1 -3.07994 GCCAACCTGAGCGAA CG-CGGCG TGCG CGCCGACG AGCAGGGCGTGGCCG 54 424 COW1_RS16350 3444625 .. 3444644 - -5.6 -3.14125 GCCACAGATGGAACA CCTGGCGCG CTT CGCGCT-GG AGTACAAGCGCATCG 49 236 COW1_RS16330 3442860 .. 3442874 - -2.1 -3.14211 ACCGCCCGCTACGAA CTGGCC CTGT GGC-AG CGGCTGGTCGCACCC 42 334 COW1_RS16315 3439047 .. 3439068 - -4.3 -3.53444 TGAGCCTGGTTGAAA CCTCAACGC AGAG ACGCAGAGG CGCAAAGGCCGCATG 51 270 COW1_RS16310 3438498 .. 3438509 - -2.2 -2.67803 TGGCCACGAAACCCA CGAA AATC TCCG GTCATGCATTGCCGG 38 108 COW1_RS16305 3435549 .. 3435578 - -13.6 -5.7946 CCTTGAATAAAAAAA CGCCGCG--GCCCG GGTG CGGGCGACGCGGCG TTGTCAGGCCTGGCC 100 46 COW1_RS16300 3434194 .. 3434210 - -10.1 -2.95388 TACCCAAGTGATACA GGCGTCG ACA CAACGCC GGAGGGGAGCGGAGA 64 48 COW1_RS16295 3432759 .. 3432778 - -2.9 -2.50291 AATCATGGCATGAAT TG-CGGTT GTCGT AACCGTCA TCGTCATCCCCGCGC 39 176 COW1_RS16290 3431520 .. 3431565 - -2 -3.4314 CAAACGCTAATAATA GTATCGTAGGTCGGATTA-GCCC GGA GGGCGTAATCCGACGT-CAGT-C ATTGAGCTGTCGGGT 46 68 COW1_RS16285 3430028 .. 3430048 - -3.9 -2.94099 TTGTTCCAGCAGAGA TTGCAGGTG GCG CAGCTGCAT GCGGATGTCCTCCCT 44 137 COW1_RS16280 3429189 .. 3429206 - -2.6 -3.61398 GGCCTGGTCGAAGAA GACCTG CATGCT CGGGTC CCTGTTCTTGAAGGC 47 211 COW1_RS16275 3428545 .. 3428574 - -5 -3.05816 GTATGCGTGATTGAA GTGCACCGGGC TGTATCCGT GCCCG-CGCAC AGATCGCAAGCATCG 47 253 glgC 3426854 .. 3426876 - -4 -3.41527 CAAGGCCTACGAGAA CCTGGCCCTG GAT CAGAGCGATG AACTGGTCTATATCG 49 432 COW1_RS16230 NONE COW1_RS16225 3416364 .. 3416374 - -2.4 -3.65224 AGTCGACTTCAAGAA CCGG GTT CCGT TCGTGGTGCTGCTGA 51 189 COW1_RS16190 3410561 .. 3410576 - -3.2 -2.91276 GGCTGGTGGAGAAAG GCCG GATTGTAA CGGC TGGGGCGGGGGGCGT 42 206 COW1_RS16185 3408651 .. 3408688 - -6.8 -3.4052 CGCCAACTGAAGGAA CTCGGCATCCGCCTGCG CAAGC CGCCGGCGGCCGCGG-G CGGCGAAGCGGCCGG 58 177 COW1_RS16165 3404094 .. 3404108 - -2.8 -3.95153 GCAATGACGGATAAA TCAGAG GTT CCCTAA GGGCTGCAGGCTCAA 58 37 COW1_RS16150 NONE COW1_RS16145 3400619 .. 3400647 - -11 -4.01939 TAACGGAGAATGAAA CTGCCCGGCGACA TCCC TGTCGCCGGGT-G AACCATCTCAGAATA 85 33 COW1_RS16125 3396003 .. 3396035 - -12.8 -2.57974 ATGATCAGCAACGTA GGTCGGGTTA-GCCC GACA GGGCGTAACCCGACA CTGGGCCGCGGTTGT 71 171 COW1_RS16120 NONE COW1_RS16115 3394289 .. 3394327 - -7.3 -3.53811 GTCATCCCGGCGAAA GCCGGGATCCAGACACC GCTGT GGTCACTGGATTCCCGC CTTCGCGGGAATGAC 60 85 COW1_RS16110 3393025 .. 3393041 - -5 -3.53444 CCAGCCGCCGTTAAA GCCTGC GGCCG GCCGGC CGTTAAACTCGGTAG 53 379 COW1_RS16090 3387492 .. 3387510 - -2.4 -4.8048 GTCGCAGATGAAAAA GCCGGTG CCGAAT CAC-GGC TACCTGGTGCTGGTC 74 449 COW1_RS16060 3382629 .. 3382656 - -6.3 -3.04144 CGCGCACCGGCAAGA TCGGCGACG GCAAGATCTT CGTCACCGA GGTCGAAAAGGTCGT 49 278 COW1_RS16035 NONE COW1_RS16030 3376109 .. 3376136 - -9.8 -3.5332 AAAGGTTGAAAGCAA TGCCGCCGGCGCG CAG CGCGCCGGCTA-A GATAATGGATTTGTC 69 79 COW1_RS16025 3374369 .. 3374381 - -3.5 -3.48276 CTTTCCGGCATAGAA TTAAT ATT ATTAA AAACAGATAGATAAT 49 206 COW1_RS16020 3373777 .. 3373802 - -14.1 -2.64803 TTACGGGTAAAGCGA GAAAAGCCCCC GTTT GGAGGCTTTTC TCTGTGTGACTTATC 78 49 COW1_RS16015 NONE COW1_RS16010 NONE COW1_RS16005 NONE COW1_RS16000 3368650 .. 3368666 - -4.3 -3.43961 GGAGAAGATCGAGAA TGCGGCC CCG GAACGCA ATATTGACGAAACTG 51 122 pilB NONE COW1_RS15985 NONE COW1_RS15980 3363695 .. 3363709 - -3.4 -2.65298 TTGATCGATTATAAC CCGGCG AAG CGCAGA TAACCCTGGATGAGA 40 4 COW1_RS15975 3362690 .. 3362704 - -7 -3.76224 GCGTGATGCAGGAAA CGGGCC TTA GGGCCG AATGACGCTTACTGA 63 171 zapD 3361718 .. 3361746 - -3.7 -2.54387 TAAAGCCTTAATGTA GGATGGGTGAAGC GCA GCGCAACCCATCG ATTTGTTGTCGTTTC 41 39 yacG 3361391 .. 3361431 - -7.6 -3.91549 ACAACAATAATATAA CCGTAGGTCGGGTCA-GCCC GAA GGGCGTAACCCGACAT-CTG TCCGCACAACTGTCG 68 97 COW1_RS15935 3353855 .. 3353867 - -6.2 -3.62224 ACACGCCCTGAACAA CCGC CTGCT GCGG GCCCTGCTGGCCGAT 56 188 COW1_RS15845 3334074 .. 3334094 - -12.5 -3.44274 CAACTACAACAGCAA TCGGGCGCC TGC GGCGGCCGA GAGCCAGGGCGGCGG 73 199 uvrA 3328934 .. 3328960 - -7.1 -2.71144 GATCGCGGTCAACCA GGGCCATGCCG CCACC CGGCTCGGCCT GAGCCTGGGCGACCG 48 342 COW1_RS15530 3277419 .. 3277462 - -7.2 -3.06915 ATGGACGGCATCGAA CTCGGGGAGTTCAGCCGCCA TATG TGACGGCTGTTCGGCCTGAG CCGGGGTCAGCCCGG 54 32 COW1_RS15515 3275615 .. 3275634 - -2 -4.24002 GCGTAAACCGCAAAA GGTTCAGG CGCG CCTGAGCA CCCGCAGCCAGCGCC 59 9 COW1_RS15505 3273356 .. 3273373 - -2.5 -2.87211 ATCCGCTGTCACAGA CCGGCGG CGGG CTGCTGG TGGCCGCGCCCCTGT 40 375 COW1_RS15490 3270174 .. 3270204 - -3.9 -3.56092 CCATTATTTTGTAAA TCCGTCATCCCGGC GAAG GCCGGGATC-CAGT ACTGTAGGTCGGGTT 51 192 COW1_RS15475 3267861 .. 3267871 - -8.2 -3.48395 ACTTTGCCCATAGAA CCCC TGC GGGG TTCATTATGGGTACC 62 120 COW1_RS15470 3265783 .. 3265802 - -3.5 -4.89838 CCAATAAACACAAAA TCCCCTC TCCCTT GATGGGA GCACCCAAACAGCGG 76 275 COW1_RS15405 3252177 .. 3252189 - -5.5 -2.87881 GAAGGTGTCCATAGA TCCCC CGT AGGGA AGATGCGGCGCGGCG 48 44 COW1_RS15400 3250686 .. 3250696 - -6.8 -3.66784 CCACCGGGAATACAA GGTC AAG GACC CGCGCGCCACCATCC 61 366 COW1_RS15370 NONE COW1_RS15365 NONE COW1_RS15360 3244134 .. 3244182 - -3.1 -2.73721 AGTAAGGGGTAAGGA GTGAGAGGGGGAGGCGGAAAAA TCGTTT CTACTCCACCTCACTC-CTCAC TTCTGACTTTTCACG 41 36 COW1_RS15355 NONE COW1_RS15350 3241731 .. 3241747 - -10.8 -5.75342 CTCTGCCAAAAAAAA CGCGGG ACAAG CCCGCG TTTTTTCACTCAGTA 100 50 COW1_RS15325 NONE COW1_RS15320 NONE COW1_RS15315 3235192 .. 3235208 - -2.9 -2.78596 GACCGCCTGATCAGA GTTGCGG AAA CCAGAAC CGGCCACCATCCGCT 41 4 COW1_RS15305 NONE COW1_RS15300 NONE COW1_RS15295 3230523 .. 3230545 - -5.6 -2.52464 TGTTGCTGGAACGCA TCGGGGTGC TGGCGG GCAC-CCGA GCCCGCGCCGATCAG 44 515 COW1_RS15285 3228331 .. 3228343 - -10.5 -3.28924 GATGCTGTGCGAGAA CGCCG ACC CGGCG GTGCGGGCCGACCTG 63 282 typA 3226149 .. 3226168 - -6.4 -2.52464 GCGTCGCGTAACCCA TCA-GGCCC GGC GGGCCGCGA TGGGTTGCGGCGCGT 48 83 COW1_RS15260 3224306 .. 3224320 - -3.5 -3.18264 GGCCTGATGGAGGAA CTGCA GGGTG CGCAG GCCGCGCATCTGGAT 45 391 COW1_RS15250 3222092 .. 3222109 - -14.1 -4.66537 TTTTGTAATAGAAAA GGCCCGC TTGC GCGGGCC TTTTTTCAGCGTTGA 100 52 COW1_RS15235 3219277 .. 3219289 - -6.9 -2.59564 GTTTCATGGGAGAAT CGGCC GCA AGCCG GAAAGGCTTTAGCCA 50 50 COW1_RS15230 NONE fabA NONE fabB 3215843 .. 3215857 - -4.2 -2.87132 GTTGTGCTCGACATA GCGC TCGGCAT GCGC CAGGGGTGCGGCAGC 44 281 COW1_RS15215 3215357 .. 3215376 - -15 -4.72986 GACGGGGACGAAAAA GGGGTGGC AATT GCCACCCC TTTTGCTTGTCGGCG 100 75 COW1_RS15200 3209590 .. 3209627 - -17.2 -2.74144 GGGTTAGCCTGAAAG GCGTAACCCGACACAT GCCGCG ACATGTCGGGTTACGC TGCACTGACCCGACC 87 52 COW1_RS15195 3208100 .. 3208116 - -3.6 -2.71416 CAGCACGGAGACAAT GCCCAC ACGCG GCGAGC CGGTGACCAGCACCA 43 135 COW1_RS15180 3199043 .. 3199080 - -6.1 -3.01712 GGCGCTGGCCGAATA CCGTGCGGCGGGGCTC GATGAGG GCGCAGCGCCGC-CGG CGCAGGATTTCACGC 49 456 COW1_RS15170 NONE COW1_RS15165 NONE COW1_RS15140 3190194 .. 3190221 - -6.2 -3.55622 TTGAAGCGCCGGAAA CAGCCACCTGGCC GGT GGTCAGG-GCCTG GTTATCCACGGCATT 58 306 COW1_RS15095 NONE COW1_RS15090 3174938 .. 3174953 - -6.8 -3.13403 GGTGGCCGATGAACA CTGGCA TCCC CGCCAG CAGGGCGAGGTGCTG 52 262 COW1_RS15080 3173032 .. 3173066 - -12.1 -3.82378 ACCGACGGATAATAA CAGTCCCCTCTCCCCG CTTG CGGGGAGAG-GGCCAG GGTGAGGGGGTATAC 83 111 COW1_RS15045 NONE COW1_RS15040 3161096 .. 3161126 - -10.5 -2.62667 TTAACCCTCAAATAC TAGAGGGT-CGCGG TAAT CCGCTTACCCTCTA CTCGTGTATGTCGAG 62 88 COW1_RS15035 NONE COW1_RS15030 3160434 .. 3160454 - -8.9 -3.33492 GCACCGATGGCAGAA CCAGACGGC GCC GCCTTCCGG TTCCACGGTGACGGC 64 255 COW1_RS15025 NONE COW1_RS15020 NONE COW1_RS15015 3157971 .. 3157981 - -6.8 -3.33696 CCGCGGTGTAACGAA GCAG CCC CTGC TCAAGGTTCCTCGGC 58 63 COW1_RS15010 NONE COW1_RS15005 NONE COW1_RS15000 3155676 .. 3155691 - -6.8 -2.80935 ACCGCATTCATGACA CGGCCT CCGC AAGCCG CAACCGGTTGCGGCG 51 2 COW1_RS14995 NONE COW1_RS14990 NONE COW1_RS14985 3153253 .. 3153281 - -3.9 -4.57073 GATTTCGGGCAAAAA GAAACCGCA AGTCTGTCGGG TGCGGCTTC CGCCTTGTGAAGGGT 70 86 COW1_RS14980 NONE COW1_RS14975 NONE COW1_RS14970 3151974 .. 3151994 - -15.4 -2.85351 GGGTGGGATATGACA GCCCCGCC GCAGG GGCGGGGC AGGTGCAGGATGGAA 83 49 COW1_RS14965 3151383 .. 3151423 - -7.6 -3.01001 CACTCCCAAATGACA TGCACCACCAG-TGACAGG CATT CCCGTGATCTGGTGGCGGA CTCCCTGATGGAGAT 56 126 COW1_RS14960 3150996 .. 3151028 - -6.2 -3.67792 GGACACGGACGCAAA GCCTGAGCAGCTGCAG GGG CTGCTGCAGC-C-GGC CTCAGGAGAGGGATG 59 170 COW1_RS14950 3149583 .. 3149611 - -4.5 -3.71848 TCGCCGGATCAACAA GCTTAAGTCGC TCGACTT GCGCCTTGAGC TTCGTAAGGCTGTAA 55 392 COW1_RS14885 3139804 .. 3139824 - -12.5 -3.05384 GTGCGGGCGAGGGAA GGTCGCAGG TGG CCTGCGGCC ACCGGTTCCTGGGTA 76 91 prfA NONE prmC 3137776 .. 3137789 - -2.3 -3.39895 CGGGGCAGGAATCAA GCAGA ATTG CCCGC TTCAGCCGCTGCCGG 46 27 COW1_RS14870 3137254 .. 3137299 - -2.6 -3.53811 GTCATTCCCGCGAAA GCGGGAATCC-A-GTGC-CTGGC AGG GCAAACGCGCGTTGGATCCCCGC CTTCGCGGGGATGAC 47 60 moeB NONE COW1_RS14860 NONE COW1_RS14855 3134783 .. 3134814 - -11.4 -3.25719 GGACGAGACCAGCAA CACCGGCCTGCTGG ACAT CCTGCCGGCCAGCG CCACCAAGCTGGGGG 68 438 COW1_RS14845 3133501 .. 3133518 - -12.7 -2.52464 GCGGTGGTCAATGGA TCCCGGC ATGC GCCGGGA TGACGGGATTCCTGG 71 223 COW1_RS14825 3128601 .. 3128634 - -3.1 -2.60423 ATGTCAATCAACGCA CCCCCGCCTCAAT CCTCCCCC ATCAAGGGGGAGG AGGTTAGAGGTCACC 40 36 mreC NONE mreD NONE mrdA NONE rodA NONE mltB NONE COW1_RS14795 3121927 .. 3121957 - -16.8 -2.64354 TCAGACATTGATAAC GGGGCGGTCGCGAC GAC GTCGCGAGAGCCCC TAGTCTACCACGACG 85 25 COW1_RS14790 NONE COW1_RS14785 3119570 .. 3119580 - -8.2 -4.4017 GCAAGCGGGACAAAA GCGC GAA GCGC GTTGAACGCCGGCAC 77 191 COW1_RS14760 NONE lipB 3112045 .. 3112059 - -4.2 -2.69598 ACGGGGAGAAAAATT GCCG ATTCCCG CGGC GGGGCGGGGTGTTGC 42 41 lipA 3110879 .. 3110894 - -5.4 -3.87438 ACAAATATCACGAAA TGCAAC GGTC GTCGCA CAATTGTTCCACGGC 61 198 COW1_RS14745 NONE COW1_RS14740 3110050 .. 3110065 - -3.2 -2.85574 GTAAGGCGATGAAAT GTACAG CGTT CGGTAC CAGGTCTATATCAAC 41 31 COW1_RS14735 3109365 .. 3109399 - -3.5 -3.35996 CAGGGCCAGGCAGAA TGCGACAGCCCATGCA GTCA TGCGTGGGATGG-GCA TAAATGCTCTCCAGT 47 89 COW1_RS14730 NONE COW1_RS14725 NONE COW1_RS14720 NONE COW1_RS14715 3103397 .. 3103418 - -4.3 -3.01712 CCCTGCTGGGCAAGA TCGGTTACG GCAC CGTCGCCGA ATGCGCGGTCAATTC 45 272 COW1_RS14675 NONE COW1_RS14670 NONE pdxA 3089010 .. 3089051 - -11.6 -2.74792 GGATCAGCCTGAAAG GCGTAATCCGACACCGCGC GCGGA GCCCG-CGTCGGGTTACGC TGCGCTAACCCGACC 66 71 rsmA 3088047 .. 3088093 - -6 -3.28712 CCTGCGGTTCCATAA GATG-TAG-GTCGGGTTA-GCCC GATA GGGCGTAACCCGACACTGGCTTC CGCATGTCGGGTTAC 54 92 COW1_RS14655 NONE COW1_RS14650 3086981 .. 3086995 - -9.2 -2.62613 GTCGATCCGAAATAC CGCGGC TGA GCCGCA TCCGGAGGCTACGCG 60 367 pgl NONE glk 3084846 .. 3084867 - -2.1 -4.56597 CGCGTCTGCCAAAAA CGGATCGAA TAAC CCCGGCCCG GAAGCGGCAATGGCC 66 60 apaG 3084298 .. 3084311 - -3.8 -3.35992 ATGCACCGGAATGAA CCGA ACAGTG TCGG ACGAATTTCACTGCT 49 118 COW1_RS14620 3083166 .. 3083176 - -3.2 -3.05844 CGCCCCAGGGCAAGA CCAA ACG CTGG TGGTGGCCCTTCGAC 43 215 COW1_RS14570 3072591 .. 3072604 - -8.1 -3.63569 GGAATTTGTGAAGAA GGCCT GATC AGGCC AGTGCCTCGCGGAGT 62 19 COW1_RS14560 NONE COW1_RS14555 NONE COW1_RS14550 3070319 .. 3070350 - -10.2 -2.63079 CGTGTAGAGAATGTA GGTCGGGTCA-GCCT GCA AGGCGTAACCCGACA TCCCGCGGCAGCTTG 62 66 COW1_RS14480 NONE COW1_RS14475 3053257 .. 3053272 - -4 -3.15583 GGAATACACGGAAGA CAC-GGA AAT TCCTGTG TTTCATTGCCGGGTC 45 135 ssrS 3052903 .. 3052935 - -13.6 -3.53224 CATGTGCCGCGGAAA GTGTCGGGTTACGCCC TGC GGGC-TAACCCGAC-C TACGAATACATTGTT 83 85 COW1_RS14465 3052106 .. 3052157 - -5.1 -3.56643 CGCAGAGGCCGCAAA GGCGCAGAGACGCAAAGATAT TTATTATTCG ATTACTCTGCGCCTCCGCGTC TCTGCGTACTCTGCG 53 41 COW1_RS14460 3051419 .. 3051450 - -5.7 -3.4252 TGGTATGCATCACAA CGGCCTCCTGCGCC TTCCG GGCGC-GATCGCCG GCATCGATCGGGATG 53 157 COW1_RS14455 3050993 .. 3051015 - -5.4 -3.01712 TTTCTGGGCTGAAGA TCAGGAGCGC AGA GCGCCACGGA ATACACGGAAAGCAC 48 202 COW1_RS14445 NONE rpiA 3048300 .. 3048310 - -8.2 -2.90212 TTATTATTGGAGAGA GCCG AAG CGGC TTCGTCTGGCCTTAA 56 192 coq7 3038402 .. 3038423 - -7.3 -2.79831 GCAACCGCTACCAGA TGATCGACG TCAA CGTCTATCA GGAGCACAGCTTCCA 48 352 crp 3035468 .. 3035487 - -4.8 -2.95192 CTGAAGGGCATAAAG GGCCGCCC TGAA GGGCGTTC AACGCGCTGCGCGCT 46 161 COW1_RS14345 NONE COW1_RS14340 3027353 .. 3027367 - -2.7 -3.13522 ACGCTGCCATCAATA GTCGC GGCGT GCGTC GGGTTACGCCTTGCC 41 100 COW1_RS14330 NONE nfi 3025091 .. 3025113 - -7.6 -2.70932 CCGCCTGTGTAACGA TGGGTTGCGC TGC GCTCCACCCA TCCTACCCGATCTGA 54 28 COW1_RS14320 3024662 .. 3024678 - -10.8 -5.79526 ACAGGCGAAAAAAAA CCCGCC GCGAG GGCGGG TCGAAGGAGGATTCA 100 57 COW1_RS14300 3018336 .. 3018383 - -16.8 -2.78384 CGCGGCGGTATTACA GGGGGCAGGGGCCATGCCCGGG TTTT CCCGGGCATGGTCCCGTCAGCC CTGACCCCGGGGTCA 87 38 COW1_RS14280 3014855 .. 3014893 - -3.7 -3.01712 CGGCTCGGCTGAATA TCCGC-GCGGCCGGCTCAG AAA CCGA-CCGGACGCTGCTGC GCGAAGCGGAATACC 44 1 COW1_RS14255 3009833 .. 3009874 - -6.5 -3.16742 TCTAACCGTGATCAA GCTGCGACGGCCGGGC TGGTTGATGGC GCCCGGACG-CGCAGG CGTCCGGGTAGGCGT 52 52 COW1_RS14250 NONE COW1_RS14245 NONE COW1_RS14240 3007926 .. 3007940 - -2.2 -4.7254 AGTTGGCATTAAAAA TTATCT ATT AAATAA TCATTATTCCGACAA 70 82 COW1_RS14235 3007223 .. 3007243 - -18.3 -5.67063 GGCATCACAAAAAAA GGGGGCGCA TGG TGCGCCCCC AGGGGGGTGGAGGAG 100 59 COW1_RS14230 NONE COW1_RS14225 NONE COW1_RS14220 3004119 .. 3004163 - -6.2 -3.5525 ACAGAGGTTTGTAAA GTCGAGCGGCGAGCGGCCGCT ATGC AGGGACCGACCGCGGC-CGCC TGGGCCGGTCGGTTG 58 467 COW1_RS14210 3001715 .. 3001744 - -20.1 -2.70932 CCTTTGTCTGAATCA CCGTCATCCCGGC CTGC ACCGGGATGACGG TAGGTGGGGCCTTGA 100 416 modA NONE modB 3000245 .. 3000259 - -2.7 -2.82156 ATCGAAACGGAACCA CAGGC TCATG GCCGG CCCAGTCCGAAGCGG 39 16 modC NONE COW1_RS14185 2997680 .. 2997716 - -7.2 -4.14243 CAGCGGACGTTAAAA GTTCCACGTCATTGCG AGGAG CGCAGCGACGTGGCAA TCTCCCAAAGATACA 71 490 COW1_RS14170 2995774 .. 2995791 - -14.1 -3.12351 TCCCGGGACACGGAA GGGCGGC TGCG GCCGCCC TTTTTTGTGTCTGCT 83 328 COW1_RS14125 2985411 .. 2985440 - -6.3 -3.86015 CATGGTTTTCAGAAA CCTGGATGCCCGT CTGC ACGGGCATGACGG ATTGAATTCAATGCA 64 33 COW1_RS14120 2983686 .. 2983725 - -8 -2.7535 TGGTTGAAGACAGTA GGCGATGGCGGGGCGACGGC GTCT GCCGTCGCC-C-C--TCGCC GGTGTTTCAAACTGC 54 45 metF 2982780 .. 2982808 - -9.5 -3.07816 CGCCGAGGTATGGAA GGATCCGTCAGTC CCT GACCGGCAGACCC AGGTTCTTCCAGATG 64 4 COW1_RS14110 2981792 .. 2981809 - -5.5 -3.14931 GGTACTGGGTACCAA CTGAACC TGAC GGTTCTG CCTCCTCCTTCATGA 49 124 COW1_RS14090 2977669 .. 2977683 - -5.6 -2.56095 TTGAGATGCAACTCA GGGCAG GGC CTGGCC GCCGATTCTCAGGCG 46 8 gshA NONE gshB NONE COW1_RS14030 NONE COW1_RS14025 NONE COW1_RS14020 NONE COW1_RS14015 2958478 .. 2958506 - -7.3 -5.00616 CCGCTGGGCAAAAAA TCAGCCCCAGCCC GGA GGGTTGCGCCTGA GACAGCGCCACTCGT 87 292 COW1_RS14010 NONE ruvX NONE pyrR NONE COW1_RS13995 NONE COW1_RS13990 2954402 .. 2954414 - -4.8 -4.14874 AGAACACTTGGAAAA CGGT TATCC ACCG CTTTCGGAAGCCGAT 64 207 COW1_RS13985 NONE COW1_RS13980 2953025 .. 2953047 - -12 -3.3197 AGAGGATGTGGACAA GCTCGGCGAT GCC ATCGCCGACC TGGAGATCGACAACT 68 109 COW1_RS13965 2949843 .. 2949853 - -8.2 -3.14132 TGCCGGTGTCATCAA GGCG GCA CGCC ATCAGGGGGTGGACG 57 11 COW1_RS13960 NONE COW1_RS13955 NONE COW1_RS13950 2947913 .. 2947931 - -13.8 -2.75022 TCCTCCAGACAGAAT CCACCGGC CGT GCCGGCGG CGCGACTCCCTATAT 76 180 COW1_RS13945 2945853 .. 2945885 - -15.6 -5.40072 TGCGCTGGAAAAAAA TC-CGGCGCCGGACC GATG GGTCAGGCGCCGTGA CTGAAGCGCGGCGGT 100 52 COW1_RS13940 2945253 .. 2945281 - -5.2 -2.70932 TCGGCGTGGTAATGA TCGGGCGATC-GC TGTG GCAGTTCGCCTGA GGGCCACCTGCCATT 47 85 pyrE 2942824 .. 2942848 - -3.4 -3.49924 CTGAAAGGAGGATAA GCGGGGTCCG GGCCG CGAAAGCCGC CTCAGAGCCGAATGG 49 258 COW1_RS13915 2940816 .. 2940832 - -7.9 -3.41745 TTCCTACAACATCAA CGCCGAC CTG GTCGCCG GCAAGGTGGCCGAGG 59 438 radC 2934862 .. 2934906 - -9.2 -2.60212 GCATTATGTCAGAAC CCGGGCGACGG-GGCAAGCATC CCC GATGCCGGTCGCCGGCGCC-GG CATGCGGCGGCAACT 60 48 rpmB NONE rpmG 2934321 .. 2934359 - -27.8 -3.14931 GGCAGGCGTGACCAA CCCAATAAAAAACCCGGC ATG GCCGGGTTTTTTATTGGG TCCGGTGATCGGAAG 100 43 COW1_RS13870 NONE COW1_RS13860 NONE COW1_RS13855 NONE COW1_RS13850 NONE COW1_RS13845 2925133 .. 2925161 - -8.7 -3.80174 ATACGCCGATAAGAA CGATGGCCGCATC CTG GGCGCGACCTTCG TCGCCGCCCTGGCCG 68 418 mutM 2923000 .. 2923040 - -19.2 -3.08679 GGCCCTGATTGAACA TGTAGGTCGGGTTA-GCCC GTGA GGGCGTAACCCGACCTACC TCTGGCAATGGGGGC 100 21 ftsY 2913667 .. 2913687 - -8.1 -4.19336 AATGACGGTAACAAA GGCGGGCAG TCT CAGGCCGCC TCGCTGTCGTCGGTC 74 16 ftsE 2912708 .. 2912759 - -10.1 -2.87132 GGCGCGCGGCATACA CCCGCGGGCTGGCC-AGCCGCGGCCA GCG CAGGCGCGGCCAGGTCAGCC-G-GGG CCCGGCGCCGCGGGG 64 109 ftsX NONE COW1_RS13775 2910338 .. 2910351 - -2.3 -3.3014 AAAAAATCAATAAAT CAGGC GCAT ACCCG GTTACGGCCGGTTTC 44 11 rpoH 2909312 .. 2909341 - -22.3 -2.87931 CGGATCCCGCACACA CGAAAACGGCCCC GTTC GGGGCCGTTTTCG TTTCCGTGACTGCCT 100 47 COW1_RS13760 NONE msrA NONE COW1_RS13750 NONE COW1_RS13745 2906633 .. 2906645 - -4.7 -4.56597 CCGGGTGGGTAAAAA TCCCG GAG CGGGC GGCGCCGCCGGCCTG 72 43 COW1_RS13740 2906056 .. 2906077 - -7.1 -5.10208 GAATCCGAAGAAAAA GGGCCGGGG CGGG CGCCGGCGC TAGAATTCACCTGCC 90 32 COW1_RS13725 NONE COW1_RS13720 NONE COW1_RS13645 2890721 .. 2890736 - -11.8 -5.68489 GACAACAATAAAAAA GCCGCC CGCA GGCGGC TTTCTTTTGGGCGAT 100 52 COW1_RS13600 2884464 .. 2884516 - -4.8 -4.02733 CAAAACACATAACAA GGCGCTCGTTCGGACGCAAACTACGC TGC GCTTCGTTTGCG-CCGCAC-AGCTTC AGCGTTAGGCCACTG 62 197 COW1_RS13515 2866786 .. 2866798 - -4.7 -4.09963 GCTGAAGAAGAACAA CCGCG GTG CGCTG GTGGGCTGGCTGTTC 62 416 COW1_RS13455 2855790 .. 2855810 - -2.3 -2.57132 GCGTTCCGGGACAAT CCCCGGCCG CTG CTGCTGTGG GCCGCCCTGATCACG 38 161 COW1_RS13395 NONE COW1_RS13390 NONE rph NONE rdgB 2841407 .. 2841420 - -4.5 -3.61715 TAGTGTCGGTAACAA CTGCA CTAA CGCAG AGACGCAAAGGCACA 53 192 COW1_RS13375 NONE COW1_RS13370 NONE COW1_RS13365 2839696 .. 2839737 - -13.7 -2.83517 ACGGACATAATACTA TCAGTCTGCTGCCCTGGCGC TGC GCGCC-GGGCAGCAGAACAT GCGTTGCATGCATGC 76 72 COW1_RS13355 2837713 .. 2837738 - -3.1 -2.84013 CAATGATACGGAAAT CGGACCGGGCT CACA AGCCCTTTGCG TCGCGGCGGGCGAAG 41 10 rpmE 2837371 .. 2837403 - -22.8 -3.17723 GCAGGCCGAACGCAA CGAGGGCGCAGCCGG TCAC CCGGC-GCGCCCTCG CTGTCAGTGATCCAA 100 65 COW1_RS13345 NONE COW1_RS13340 2835003 .. 2835060 - -5 -2.9665 GCAAAGGGCACAAAG GCGCAGAGTCG-CAGAGAGAATGGAAAG CTGG CCTTA-ATTCTTCCTGGCGCCTCTGCAC CCAGAGGGCAGTAAC 46 74 COW1_RS13335 2833455 .. 2833471 - -10.8 -3.05463 AGCCGGCCGATGGAA CGCGCC GGGCT GGCGCG GGTGGAGGCGCTGCT 62 224 COW1_RS13320 NONE COW1_RS13315 NONE COW1_RS13310 NONE COW1_RS13305 NONE COW1_RS13300 2825119 .. 2825144 - -13.3 -4.59342 CCGACCAGAAATAAA TTGCCCGGCAT TTTC ATGCCGGGCAG GTATGCCAGAAAAGC 100 57 aroK NONE aroB NONE COW1_RS13285 NONE COW1_RS13280 NONE COW1_RS13275 2820133 .. 2820170 - -3.3 -3.71378 GATTCGATAGGCAAA CCCCGAGCGGTCGGCA AGTATAG CGCCG-CCGATCAGGC GGTTCAAACCGACAT 52 88 gltB NONE COW1_RS13265 2813733 .. 2813758 - -3.1 -3.02984 GGAAAATGGATAAAC CGCCAAGGCGCC AAG GACGCCA-GGAG ACTATAAAACAAGAG 43 169 hemE NONE COW1_RS13255 NONE COW1_RS13250 2809340 .. 2809373 - -7.3 -2.52795 AACTGCGCTAATGGA CTCCGTCATCCCCGC GAAG GCGGGGATCCAGAAG CCGCGGCGGGATATG 50 129 COW1_RS13235 NONE COW1_RS13230 NONE COW1_RS13225 2804336 .. 2804364 - -16.1 -3.85698 TTGGGGTTGCAGAAA CAAAAAGCCCGGC GCG GCCGAGCTTTCTG TCGGGTCGTGACTGC 100 55 COW1_RS13220 2803158 .. 2803172 - -12.8 -3.86822 TAACCCGGTTATAAA CCGGCG CTC CGCCGG GCGTGTACTCGGGGT 87 81 COW1_RS13215 2800468 .. 2800478 - -4.6 -3.25823 CGCCGGCGACAGTAA CGCC AGG GACG CAGAGGCGCAGCGAC 49 99 COW1_RS13210 NONE COW1_RS13205 NONE COW1_RS13200 2795709 .. 2795719 - -8.2 -2.56164 GCTTCAATGACGAAT CCGG ACC CCGG CATGGAGATTGCGCT 53 3 COW1_RS13195 2795188 .. 2795207 - -5 -2.96274 TCTGGGAGAAGGAGA GCTCCA CCTTCCCC TGGAGC TATGACGCCACCGAG 45 205 speE 2790985 .. 2791012 - -2.7 -3.35046 GGAGGCGGTGAAATA CCAGATCATGA TCATGT TCCTGATCTCG GTGGGGACGGGGCTG 46 327 COW1_RS13155 2785238 .. 2785254 - -9.4 -4.89054 TCTACAAAAAAAGAA CCCCTC ATCCA GAGGGG CAGGGGTGGGGCTGT 100 92 COW1_RS13140 2781017 .. 2781032 - -4.7 -4.0348 ATACGACATGAGAAA GATCG CCTGGT CGATC AGATTCGTCCGCTCA 62 385 COW1_RS13135 2780197 .. 2780207 - -2.4 -3.29144 CGAGCTGGTGCAGAA CCTG ATG CTGG CCGCGCCGACCACTC 44 197 COW1_RS13110 2773632 .. 2773660 - -7.3 -2.90212 GGAGTATTGCAGACA GGGTACGGCAACA GAA TGTGGCCGTTACC GTTTGTGGTCCGCAC 53 162 COW1_RS13105 2772773 .. 2772789 - -7.9 -3.34344 GCAGTCCGGAATCAA GAGGCCG CGG CGGCATC AGGCGTCCCACAGGT 61 24 COW1_RS13100 2772066 .. 2772104 - -2.3 -3.54129 CATACCGTCGCGAAA GTTTC-GCAGCCATCC-GC AAG GCAGGCTGGCCGCTGATTC AGTACCGAAGGGCCG 47 46 COW1_RS13095 NONE COW1_RS13090 2769785 .. 2769834 - -18 -5.14563 TGCCTGAGTAAAAAA GGCCGCCCCCGGTGCAG-TGCC TGTGACTC GGCAGCTAC-CCGGGGGCGACC CGTTGATCAGTCATT 100 139 rnk 2769039 .. 2769064 - -4.5 -3.19192 CTGGATCGAATTCAA CGCCCGCTTCC GGCT GGAGGCGCCCG GTCCGGACGATCCGC 47 305 hspQ 2768243 .. 2768279 - -2.8 -3.15961 GAAAAGATTATTTAA CCCTATCTCCTCCCCC TTGAC GGGGGTACCCATAGGG CATAACAAGGATGGG 43 65 COW1_RS13070 2767764 .. 2767778 - -2.1 -2.75064 GCCGGCAGGCAATGA CACAG ATCAG CTATG GGCCAACAGGCGGTC 39 17 COW1_RS13065 NONE COW1_RS13060 2764248 .. 2764272 - -5.5 -4.84017 AAGGTGGGAGAAAAA CGGGGCCTGAA GGC TGCTGCCCCCG GCGGAGGGTGTTCGC 79 141 COW1_RS13055 2763326 .. 2763336 - -8.2 -3.23274 GCGCGGATAATGCAA GCCG GCG CGGC GGGGACGGGGTGATG 59 54 COW1_RS13050 NONE COW1_RS13045 NONE mdoH 2758984 .. 2759019 - -2.5 -4.33258 ATGGTGAAACAGAAA CAACATCAGCGGC GTCGGAACTG GCAGCGGATGCTG GTGGCCGTCACGGGA 65 268 COW1_RS13030 NONE COW1_RS13025 NONE COW1_RS13020 2756879 .. 2756905 - -7.3 -2.52023 CAGTGACACCAAGAC CCGCC-ATGTCG GCAT CTACATCGGCGG CGGCCGATTCATTCA 47 133 COW1_RS13010 NONE COW1_RS13005 NONE COW1_RS13000 2754457 .. 2754485 - -5.9 -3.01712 GCGCGGCCTGGAAGA GATCGAAGGCGAG GTG CTGGCCGCCAATC AGGAGATGCTGGCCA 49 101 COW1_RS12990 2750753 .. 2750768 - -3.2 -3.30771 CCACAGCCCGGATAA GCCAAG GTAT CTTTGC CGGTATCCGTAAGCA 45 112 COW1_RS12985 2749818 .. 2749830 - -6.9 -3.28712 GGGCTCGGTGGAGAA GGCGC TCA GCACC GGCACCCTGTGGGCG 54 482 COW1_RS12955 2744914 .. 2744964 - -6.2 -3.88583 GAAAGCCCGGACAAA GC-GCTGTAGGTTGGGTTA-GGCGC GACA GCGCCGTAACCCAACGAGC-GCAGC CTGAATGTTGGGTTA 64 105 COW1_RS12945 2742845 .. 2742855 - -8.2 -2.57931 TCCACCTGGCAGAAC CCGG ATA CCGG CTATCAGTATGCGGT 52 189 COW1_RS12935 2741161 .. 2741191 - -3.9 -2.91264 CGGGTGATGGAGAGA TCGGACAGGATCA TCCGT CGCTGCCGTCCGA GTCCAGCGACTGCAG 44 5 COW1_RS12930 2737726 .. 2737752 - -16.7 -3.05596 GATTCGCGCAGCGAA GGCAAGGCCAT TTAAC ATGGCCTTGCC AGAGGCGAACGCCCG 89 340 COW1_RS12910 2736083 .. 2736107 - -15 -5.14563 CCGGGCATGAAAAAA CCCCGCCGCGG TCAC CCG-GGCGGGG TTTTTTTCATGCCCG 100 51 COW1_RS12895 2731523 .. 2731542 - -9.2 -2.71011 ATCGTCCGTGAACGA TGCGGCGC CGGC GCGCGGCA GTCAAGCCGCGGCCC 61 44 COW1_RS12890 NONE COW1_RS12885 2729014 .. 2729027 - -3.7 -3.01712 GCCTTTGCGCCAACA CTGGC AGCC GCCTG CACCTGGTGGAGCCG 44 400 COW1_RS12875 2727665 .. 2727682 - -3.3 -3.00498 TACATGTCACAGATA TCGGACGC AGC GCG-CCGC GCTTTATAGTGCGGC 42 108 COW1_RS12870 NONE COW1_RS12865 NONE COW1_RS12860 NONE mshL NONE COW1_RS12850 NONE COW1_RS12845 NONE COW1_RS12840 2720352 .. 2720368 - -3.7 -3.57263 ACGCGGAGGCGCAAA GGCAATA TAA TATTGCA CAGCCTCTTCGCCTG 51 176 COW1_RS12835 NONE COW1_RS12830 2718455 .. 2718476 - -13 -4.18018 GCCCGGGACGCAAAA GGGTGGGC ACGATG GCCCACCC TCTTGCACGCACTTA 93 65 COW1_RS12825 2717831 .. 2717881 - -8.9 -3.40597 GCCTGTATGGAAAGA CTCTGACGACCCTGTCAACCCGGC GCAG ACCGGGTTGAACCGGCCG-CAGCG GTTACTGGATCCCGG 64 121 COW1_RS12820 NONE COW1_RS12815 2716656 .. 2716686 - -5.2 -2.64933 GACGCACTGAGATCA GCCCAGCGCCTG CGTCATC CCGGCGCAGGCC GGGATCCAGAATCCG 46 118 COW1_RS12810 NONE COW1_RS12805 2714140 .. 2714161 - -4.4 -3.09327 CCAGTCCAGTCAATA GCGCACAT GTCGGG ATACGCGC AATCCTGCCGGCATA 47 209 glyQ NONE COW1_RS12750 2701062 .. 2701102 - -6.3 -3.72893 GATGGGTGGAGCAAA GC-GCAACCCATCG-TTGA GCAGT TCATTCGATGGGTTACAGC GCATGGCGCTTCCAC 61 129 COW1_RS12745 NONE COW1_RS12740 NONE COW1_RS12735 2699400 .. 2699418 - -7.4 -3.23638 CGAAAGATTGAGGAA GATCGCGA ATT TTGCGATC AATCATTAGTACCGC 56 24 rpmH NONE rnpA NONE yidD NONE yidC 2690371 .. 2690419 - -5.4 -2.7795 GAAAGCACGGAATTA TTTATGCTCTCATTGCCATGGCGC TGC GCGCC--GGCAATGATAGAACAAG GTTTACCATAATTCT 47 94 mnmE 2688872 .. 2688930 - -38 -2.60032 TGCTCTCCAAAAAGG GTCCTCAAAAGGGGTCGGTGACAAATGA GAA TCATTTGTCACCGACCCCTTTTGAGGAT CACCGGCCTCTTTGG 100 68 COW1_RS12685 2688326 .. 2688336 - -3.2 -2.80612 CGGAACCGGAACAAT CACA GCA TGCG TTGCAATACATCGTC 41 14 COW1_RS12680 2686658 .. 2686694 - -8.6 -2.50492 CACGAGCATTAATAC CGTCTGCTGACCGCCCC GCCC GGGGCGGTCA-CGGCCT TTCCTGTCTCCCCAT 57 17 COW1_RS12650 2679701 .. 2679713 - -3.3 -3.13784 AAGGAAATCTTAAGA GACAG AGC CGGTC ATTCTATGCAGCCCC 43 73 mnmG NONE rsmG 2676986 .. 2676996 - -6.8 -3.35679 GCTTGCTATGGATAA GACC GTA GGTC GGGTTAGCGACAGCG 58 118 COW1_RS12635 NONE COW1_RS12630 2675084 .. 2675133 - -12.2 -3.63515 TGTCATTGCGAACAA CGCGAAGCAATCTCGTACAGCA GGCTCA TCCGGTTGGAGATTGCTTCGCG TTGCTCGCAATGACG 77 61 COW1_RS12625 NONE atpB NONE atpE NONE COW1_RS12610 NONE COW1_RS12605 NONE COW1_RS12600 NONE atpG NONE atpD NONE COW1_RS12585 2667687 .. 2667721 - -22.2 -3.53012 TCCGGGTGGCGCAAA CGAACAGGGGGCAGCC GTT GGCTGCCCCCTGTCTG CTTTGCCGTCATTGC 100 124 COW1_RS12580 2666990 .. 2667014 - -15.7 -2.52464 CTGGCGGTCAATTCA GCCCCTCTCCC TCC GGGAGAGGGGT TGGGGTGAGGGGATC 84 154 glmU 2665414 .. 2665430 - -5.1 -2.77678 GAACATTTAACACCA TGCAACC TAC AGCTGCA TCCCTAGCATCATCG 44 179 glmS 2663070 .. 2663104 - -3.4 -4.22338 ATCAGAAGTTGAAAA TCAAGCTGGAGATTGA TGC TCATCCCCCGGCCGGA TCAGAGTTTGATTAT 63 428 COW1_RS12555 2661577 .. 2661592 - -5.4 -4.37067 CAAATACTATGAAAA CAAGCC TATA GACTTG CCAGAAAAGTTTCCT 72 102 COW1_RS12535 2658885 .. 2658914 - -3.3 -4.05033 GGTACTGTACATAAA CATGGCCCGCGAC GTCT GCCGCCGGCTGCG GGCCGCCGATCAGCG 59 313 COW1_RS12525 NONE COW1_RS12520 2657305 .. 2657315 - -6.8 -2.8805 ATGACTTGGGACATA GGAG TCT CTCC TCATATCTCAAGGCC 53 183 COW1_RS12515 2655892 .. 2655902 - -8.2 -4.08945 AGGATGCCGTCAAAA CCGC TCC GCGG CAACGCCGGGCGTCA 71 38 COW1_RS12510 NONE COW1_RS12505 NONE COW1_RS12500 2650067 .. 2650079 - -3.3 -2.78816 GCATCCTGCAGCAGA CCCAG GAG CCGGA GCAGATTCTGCAACA 41 197 COW1_RS12490 NONE COW1_RS12485 2648473 .. 2648527 - -7.1 -4.42639 AGAGCGGAAGGAAAA GC-GCCGCAGCCTCAGCATG-CACGAT GGC ATCGCGCCCTGGTGCGACTGCTGCAGC TGCGAGGCCGAGCCC 75 303 COW1_RS12470 NONE COW1_RS12465 2644858 .. 2644868 - -8.2 -3.91473 ACAAATCGGGAGAAA GGCG AAA CGCC AGTGCGATTGGCGGG 68 426 COW1_RS12460 NONE COW1_RS12455 NONE COW1_RS12450 2640920 .. 2640938 - -8 -2.66695 CGCGGCAGCAAACAT GGCGCCGG CCC CCGGCACG GCTTCGATTTGAACA 53 113 COW1_RS12435 NONE COW1_RS12430 2637156 .. 2637176 - -9.7 -5.9873 GCAGGACAAAAAAAA CCCCGCA GAAAAGG TGCGGGG TATAAAAACGCTTTT 100 484 COW1_RS12390 2630440 .. 2630451 - -3.6 -3.57144 GGTTTCATCTTCAAA CCGC AAAG GCGA AGAAGGCGCGCGAAG 51 167 COW1_RS12385 2628786 .. 2628807 - -6.5 -3.21276 CGGGCCGGCATAACA CCCGG-ACTG AGG CGGTTCCGGG CCTGTGCCTGATTTC 54 101 COW1_RS12380 2627877 .. 2627902 - -10.4 -3.01712 GTTTCGGCGCCAACA GCCGCGCGGCG CTGAT CACC-CGCGGC CTGGTGGAAATGATG 60 418 COW1_RS12350 NONE COW1_RS12345 2622506 .. 2622518 - -3.3 -2.92003 ACAACAGGCTATATA CACAG GTC CTGGG TGCGACCTTAGCACA 42 84 COW1_RS12340 NONE COW1_RS12335 NONE COW1_RS12330 2619577 .. 2619614 - -14.2 -2.78384 GGTCGGGTTAGCACA GCGTAACCCGACAGGC CACGGC GATTGTCGGGTTACGC CTTTCAGGCTAACCC 80 174 COW1_RS12295 2611982 .. 2612006 - -10.8 -2.56426 CAACATCGAGAACAT CACGCCGGTAG GCAG CTAC-GGCGTG CAGCTGCATTTCGAC 62 369 COW1_RS12285 2611292 .. 2611306 - -3.4 -3.36327 CGAGCGCACCGAGAA CATCGG CGC CCGGCG CCTGCACACGGTGAT 48 275 COW1_RS12240 NONE COW1_RS12235 2602277 .. 2602287 - -2.4 -3.04715 CAGGCGTCTCAAAAC GTGG CCT CCTC CAGGATCGCGGTATA 41 8 COW1_RS12230 2601681 .. 2601719 - -7.4 -2.71364 TGATTTTCGGAATCA TCCTATGATGGGTTACGC TGC GCTTCACCCATCCTACGA TCCTTCCGATGATTT 51 118 COW1_RS12225 2600800 .. 2600811 - -5.8 -3.57462 CAGGCTATCCTGAAA TGGG ATAC CCCA TAATGGGATATAGGA 55 335 COW1_RS12215 2599778 .. 2599806 - -5.1 -3.8917 CCTCAACTACAAGAA GCGCATCGAACAG CGT CTGAATGACGCGC TGGCGAAACTGTAAG 59 149 COW1_RS12195 NONE COW1_RS12190 2592038 .. 2592074 - -12.9 -2.78816 CCAGCCGCGATCACA TCGGCGGCACCGCGCC GTCCCA GGTGCGG-GCCGCCGC ACAGCGGGCGCGCCA 67 46 COW1_RS12180 NONE COW1_RS12175 2588657 .. 2588667 - -2.4 -4.37871 CGAAAGAAAATGAAA GGAC GTA GGCC GGGATAAGCACAGCG 62 141 hemC NONE COW1_RS12160 NONE COW1_RS12155 NONE COW1_RS12150 2583422 .. 2583453 - -12.2 -2.65993 ACGACATCTACATGA GCGGCCCGCCGGCGA TGG TCGA-GGCCGGCCGC CAGAGCTTCCTCGGC 64 418 COW1_RS12140 2581180 .. 2581204 - -7.2 -3.2794 GTTCATGTACACCAA GTTCGTCATCG TCAC CGACGACG-AC GTGAACATCCGCGAC 54 380 gorA 2575696 .. 2575706 - -2.4 -2.5632 TAATACAGCATGAAC CGGC ATC GCCC TGCATTCGGGTATGC 38 289 rnd 2574334 .. 2574344 - -8.2 -3.59262 GCGGACACCCGTAAA GGCC TGC GGCC GAGCTTCACTCCGGC 62 193 COW1_RS12090 NONE COW1_RS12085 NONE COW1_RS12080 2568882 .. 2568916 - -6.2 -3.37487 GGACAGCTTCAAATA TCTCGACCGCCGGCTG CAT CAGCATGCGGGCAAGC TCGCTCAGGCCGCCG 55 178 COW1_RS12060 2564987 .. 2564999 - -6.9 -3.53012 GCGCGCTGGCCGAAA CCGGC GAT GCCGA GGGAGCCATTGCCGC 58 135 COW1_RS12010 2553270 .. 2553291 - -18.7 -4.19735 TCCCTGAAAAGGAAA CGGCCCGGC AAGC GCCGGGCCG CATCGGGGGTCTGCC 100 49 dprA NONE COW1_RS12000 NONE topA 2549082 .. 2549109 - -9.2 -2.58714 CGGGACAGGAAGGTA GGTCGGGTTA-GC GCA GCGTAACCCGACA GTGGCCGGCATGTTG 60 144 polA 2541676 .. 2541709 - -5.9 -5.41143 GAGCGGGCAAAAAAA CGCCCCGGCTG CAAGGGGGAAGT CGGCCGGGGCA AGGTGTCACCCGGAT 93 199 COW1_RS11955 2539921 .. 2539954 - -16.1 -4.11394 ACCGGACCGGGAAAA CG-ACAAGGGGCGGCC CAT GGCCACCCCTTGTTCA GTCATATCGATTGCA 100 61 COW1_RS11950 2537776 .. 2537800 - -5.5 -3.524 CACCCACTGAGACAA CGGCGGGGCCA GTT TGCTCCCGCAG CGCTGAACCGGGGCT 55 60 ccsB 2536476 .. 2536494 - -5.4 -2.80344 GGGGGAGGGAACAAG GAAATAAA CAC CTTATTTC ACAGTTCGCCGTAGG 47 24 COW1_RS11940 2535534 .. 2535553 - -12.1 -5.19328 ATCGGACAATAAAAA GGCCCGC ATGACG GCGGGCC ACCCTATCCAAGTAG 100 130 COW1_RS11935 NONE COW1_RS11930 2533002 .. 2533033 - -3 -3.01712 CCCGTGGGTTCAATA CTGCCCCGTGTGTC TGTATC GACGC-C-GGGCAG GAAGTCTTCAGATGT 42 33 COW1_RS11925 NONE COW1_RS11920 NONE COW1_RS11915 2529337 .. 2529366 - -5.5 -4.36914 CCCCGCGGCACAAAA CGTGAAGCCGGAC CGGC GCCCGGCGGCAGG ACTCAGAATCCGTAC 69 28 COW1_RS11910 2528679 .. 2528700 - -4.3 -3.61398 GCGGCCGCGGAAGAA GCCGG-GGAC GAC GCCTACCGGC CGATGACCGACGAGG 52 259 fnr 2521939 .. 2521958 - -9.2 -3.4071 AACAATCAGGCAGAA CCGACGGC TCGG GCGGTCGG CGGAAAGGCGAGGTA 67 54 ccoN 2520303 .. 2520319 - -5.1 -2.71144 CATTCTTTTCAACGA CTTCATG ACT CATGACG TATCCTCCTCAGGCG 44 34 ccoO NONE COW1_RS11845 NONE ccoP 2518560 .. 2518595 - -21.9 -3.53012 TTTCCCGGCCGCAAA CGCCAGCGGCGGGCC GCCCGG GGCCCGCCGCTGACA GTTCTGGCGCTACTC 100 39 ccoG NONE COW1_RS11830 2516497 .. 2516510 - -2.3 -3.19157 GATCAACCGCACTAA CATGG TGGC CCGTG GTGCGTTGTTTCAGA 44 36 COW1_RS11825 2515913 .. 2515928 - -2.5 -2.62616 GGATCTTCTACACCA TCGAG ATGCTG CCCGA ATTCTGGCAGGGGGT 38 213 COW1_RS11810 NONE COW1_RS11805 NONE COW1_RS11800 2511798 .. 2511813 - -10.4 -2.53263 TCGACGGGGAATGGA TCGGCG GTTT CGCCGA CCTCACCGAACTGCA 56 116 COW1_RS11790 2510809 .. 2510830 - -6.5 -5.50499 GGACATTGAAAAAAA CCTCAACGC AGAG GCGCCAAGG CGCAGAGAAAACAGA 95 228 COW1_RS11785 2510238 .. 2510276 - -15.4 -4.57569 CGAGGCGGGGAAAAA CTCAACCCGCCAT-GGC GCAGGG GCCGATGGCGGGTTGGG GAAGAAACGCGCAGA 100 104 COW1_RS11780 NONE COW1_RS11775 2507718 .. 2507752 - -10.6 -2.64243 TTACACTGGAGAGTA GGATGGGTGAAGGCGC TGT GCGCCGCAACCCATCG ATGCGGACCGACGAT 62 124 moaB 2506728 .. 2506740 - -2.6 -4.25848 AAGGGCGCAGTAAAA CCGC TTTGC ACGG CCAGCACAACGAAAT 62 456 COW1_RS11715 2497406 .. 2497432 - -19.5 -5.4505 CGCCGGAACAAAAAA CGCCGCCCGTT TCGTG AACGGGCGGCG TCATGCGTAACCCGC 100 67 COW1_RS11710 2495709 .. 2495719 - -6.8 -2.81464 CCAGCATCGACCAGA TGCG CCG CGCA CTGGGCCGGCACGTC 50 211 COW1_RS11690 NONE COW1_RS11680 2491752 .. 2491771 - -13.6 -5.71712 CCGGACATAAAAAAA CCCCGTTC TGAC GAACGGGG TTTTGTGGCTGCATC 100 47 COW1_RS11670 NONE COW1_RS11665 2483001 .. 2483011 - -8.2 -4.37886 GTATGCCGGACAAAA GCGC GAA GCGC GTTGAACGCCTTTAT 77 182 COW1_RS11660 2481575 .. 2481586 - -3.6 -2.66733 TGGGAACGCAGAGGA CGCG GAGT CGCA GAGACGCAGAGAAAC 42 55 COW1_RS11655 NONE COW1_RS11650 2479652 .. 2479687 - -9.6 -2.72227 AAGATGTCTGAACCA GCTGCCGA-ACCTGACG TCC CGGCCGGCGCCGGCAGC GACCGGGCCGCCGGG 61 133 COW1_RS11645 2479081 .. 2479097 - -2.2 -4.37886 TTACTTTGTATAAAA GCTGAC AGGAA GTCAGG CTAATTCACGTGTTT 62 55 COW1_RS11635 NONE COW1_RS11630 NONE tsaD NONE folB NONE folK NONE COW1_RS11580 NONE COW1_RS11575 2465693 .. 2465705 - -6.2 -3.31248 TAATATTCCTGACAA CGCC GGTCA GGCG AACACCCAGAACAGG 54 19 COW1_RS11570 2465164 .. 2465182 - -8.8 -4.13767 GCGGTTACGGGAAAA GCGGATCG TGG CGATCCGG GAGGTGAAAACCGGT 78 74 COW1_RS11510 NONE COW1_RS11505 2451556 .. 2451584 - -5.3 -4.75472 GCCAGATCAATAAAA TCGGACCGGATC AACCCG GATCCGG-CAGA TTTGAATGTTTAAAT 79 97 COW1_RS11500 NONE cobA NONE COW1_RS11490 2448321 .. 2448334 - -4.5 -2.64416 CAGGCCCAGCAGAAC GAACC ACAG GGTCC CGTCATACCGGCGCA 43 216 COW1_RS11485 NONE COW1_RS11480 NONE COW1_RS11475 NONE COW1_RS11470 NONE COW1_RS11465 2445099 .. 2445157 - -7.4 -2.57092 AATGTCATTAACGCA GAGGCGCGGAGGCGCAGAGATGGCAAT AATGAA ATTCATTCCTCTGCGTCTCCGCGCCT- CTGCGTTTTTGTCGC 50 2 nirJ 2443812 .. 2443824 - -6.9 -3.62859 ACCACAACGCTCAAA CCGGC TCG ACCGG GATGTACACCTTCCC 60 8 COW1_RS11455 2441780 .. 2441800 - -3.8 -3.35849 GTCAGGAAATCAACA CCCTGGCG AATTG CGCCGCGG CTGATTCGGATCAAC 49 238 COW1_RS11450 2440205 .. 2440249 - -10.6 -2.75343 TGGACATCCCCAAAG GGGTGATGGCCTCGCGCTTG TCGGT CAAGCCCGAGACCTTCTCGC GCATCCTGCGCAATC 60 147 COW1_RS11440 NONE COW1_RS11435 2437635 .. 2437658 - -4.4 -3.50853 CGTCCGGAAGTACAA CCCTGCCCGG TCTT CCGATCATGG CCTGTACTGCGGCAT 53 60 COW1_RS11430 NONE COW1_RS11425 NONE COW1_RS11420 2435765 .. 2435804 - -10 -2.88822 CTCGCCAGACAATCA TGTAGGTCGGGTTA-GCCC ACA GGGCGTAACCCGACGTCCT CCGCAGCCCTGTCGG 64 125 COW1_RS11415 NONE COW1_RS11410 2434067 .. 2434114 - -6.2 -3.06183 GTCATTGCGAGCGAA GCGTGGCAATCTCGTAATG-CAG GAC CAGTCGGTTGGAGATTGCCACGC TTCTCCCATAGAATC 52 135 COW1_RS11405 2432067 .. 2432097 - -16.3 -2.63858 CACCAGACGCAGAAT GTCGGGTTACGCCC TGCC GGGC-TAACCCGAC CTACACTACATCCTT 84 48 COW1_RS11395 NONE COW1_RS11390 NONE COW1_RS11385 NONE COW1_RS11380 2426923 .. 2426935 - -10.5 -3.05463 AGGCCTGCGACTGAA GGGCG TCA CGCCC GGCATTCGCGAGGCA 60 205 COW1_RS11325 2413931 .. 2413945 - -7 -4.21812 GGCGACTGAAAACAA GGCGCG TAC CGCGGC AACAGACCGCCGGCG 71 93 COW1_RS11320 2413458 .. 2413485 - -18.4 -5.45802 GGGGCAAAATAAAAA GCCCCTGTCCGG TGGA CCGGGCAGGGGC TCGGACTTGCTGGCA 100 55 COW1_RS11315 2412420 .. 2412461 - -4.3 -3.93401 CGTAGAAACGAAGAA CTACGTAGGTCGGGTTA-GC GTT GCGTAACCCGACAACCGCGG CACGTTGGGTTACGG 57 100 COW1_RS11310 2409891 .. 2409930 - -15.8 -2.82432 AAAGCACGGAATAAT GCAGGTTGGGTT-CGTCGC TTC GCGCCGTAACCCAACATGC CGCGACAGTGTCGGG 86 143 COW1_RS11305 2409103 .. 2409156 - -19.1 -3.01684 AAGCACGGACATACA TTATTACCATCTCACTGCCATGGCGC TGC GCGCC-TGGCGATGAGATGGCAATAC GCATACATGATTATT 100 81 COW1_RS11295 2405711 .. 2405724 - -5.9 -3.14344 CATGGGCGCGACCAA GGCCG ACTT CGACC GCACCGTCGCCATCC 51 320 COW1_RS11270 2400359 .. 2400374 - -6 -2.55351 GCTCTTGATATCAAT CGCCCG TCAG CCGGCG CTGGGCCTCGCGGTA 48 5 COW1_RS11265 2399691 .. 2399709 - -3 -2.60075 GCTCCTCGAATGAAC CGGATCAG TAG CGGATACG AGGAGGATAGCTATT 40 36 COW1_RS11260 NONE COW1_RS11255 2397039 .. 2397067 - -7.4 -3.83868 CACGAACAAAATCAA CCGTCATCCCGGC GCAG GCCGGGATC-CAG AGACCACGGCGGGCC 66 101 COW1_RS11250 2393823 .. 2393838 - -4.6 -3.47573 TCAGCCAGACCAGAA CGGGTG GTAT CACCAG CCTCTGCATCAGCGC 51 34 COW1_RS11245 2393245 .. 2393263 - -5.9 -3.57144 GCGGGCACGTGCAAA CGCGGTC AGGTA GACCGTG GCTCCCGGTGCGGGA 55 41 COW1_RS11240 NONE COW1_RS11235 NONE COW1_RS11230 2391738 .. 2391753 - -3.2 -3.46081 CACTGAATGAATGAA TGTTCG GACA CGAGCA CCGTTTCAGTGATGG 47 31 COW1_RS11225 NONE COW1_RS11220 NONE COW1_RS11215 2388382 .. 2388396 - -8.6 -2.85503 GCTCAATAGTGAAAC CGGATT TGA AATCCG CTCATGCATCCATTG 58 67 COW1_RS11210 2387766 .. 2387782 - -3.7 -3.2614 CAGGTGTCAGATCAA GTCGAAA CTA CTTCAAC TAACGGTTGTGCATC 47 25 COW1_RS11205 2386517 .. 2386527 - -4 -2.50816 TCCTCATGTAGTAAT CAAT CAT ATTG GTACTAGCGGCGGGG 41 141 COW1_RS11200 NONE COW1_RS11195 NONE COW1_RS11190 2384387 .. 2384412 - -3.9 -3.35046 TCACCTGCTGAAAGA CATTCCGGAGT TACA ACCACGGATTG TGTTCCGGATTGATT 49 163 COW1_RS11185 NONE COW1_RS11180 2381579 .. 2381603 - -6.3 -2.98489 GAAAACAGATAAGGA CTGCGTCGACG CCG CATCGCCGCAC AGATTGATCTAGAAA 51 34 COW1_RS11175 2381070 .. 2381103 - -2.9 -4.81212 CTGACTATAACAAAA GCGGCCCG-GATTGCC ACA GGCCTTAGCGGCCCGC CGCCGGGCCTCAGGC 73 35 COW1_RS11170 2380245 .. 2380267 - -4 -3.20382 CTTCAGAGCCACCAA GCCGCGTC AGTGCAA GGCGCAGC GCGCAGGCAATGGCG 47 455 COW1_RS11165 2379966 .. 2379996 - -25.6 -4.33151 GATGAGAACGCAAAA GAAACGGGCGGGGT ACA ACCCCGCCCGTTTC TTTGTACAGCCGGGC 100 49 COW1_RS11145 2375326 .. 2375340 - -6.4 -3.7347 GTCAATATCGAACAA CTGTCC TAT GAACAG ACAGCGCAGGTCCTG 59 375 COW1_RS11125 NONE COW1_RS11120 NONE COW1_RS11115 NONE COW1_RS11110 NONE COW1_RS11105 2362770 .. 2362790 - -10.4 -4.24342 GGTTTCAGTAAGAAA CACCCGCC GGGGA AGCGGGTG CAGAGGGGAATGGAA 82 184 COW1_RS11100 NONE COW1_RS11095 2360360 .. 2360383 - -18.2 -4.08279 AGATTGCATAAAGAA GTGACCCGGC AGAT GCCGGGTCAC GACAAACGGCCTCAG 100 37 COW1_RS11090 NONE COW1_RS11085 2359176 .. 2359193 - -8.4 -6.23209 TGAACCAAAAAAAAA CGGGAC GCGAAG GTCCCG TTAAGAGGGTGGAGG 100 74 COW1_RS11065 2355760 .. 2355789 - -13.5 -2.65354 CGCACTTCAAACCGA TGGGTTGCGGCGC AAAG GCGCCTCCACCCA TCCTACGAATAGCGA 74 44 COW1_RS11040 2349296 .. 2349330 - -12.8 -2.66634 GACTGCAGGACAGTA GGATGGGTGGAGGCAC CCT GTGCCGCAACCCATCG CCAGGACCGCGGCAT 71 357 COW1_RS11020 2344951 .. 2344987 - -19.5 -4.2558 TATGTGGGATTAAAA CGTAGGTTGGGCTGAGC AAC GCGAAGCCCAACCTACG TCTCGTATAGTGCCT 100 21 COW1_RS11005 2340377 .. 2340398 - -18.7 -5.21709 GCCGACATGAAAAAA GCGCCGCCC CGAG GGGCGGCGC CTGTTCTGCAGCCGC 100 53 COW1_RS11000 2340172 .. 2340196 - -5 -2.88249 TATACCTCGGAGACA TGGATGCCCGC CGTC GCGGGCATG-A CGAATGAATTCAGAG 46 67 COW1_RS10995 2337828 .. 2337859 - -14.4 -2.51133 GAGGCAGGCATGAAT GATGGGTTGCGGCG CAGG CGCCTCCACCCATC CTACCCGAGCAGCGT 78 82 COW1_RS10985 2334379 .. 2334389 - -8.2 -4.37886 GCAGGCGGGACAAAA GCGC GCA GCGC GTTGAACGCCCTTCA 77 406 mutY NONE COW1_RS10975 2332347 .. 2332371 - -7.1 -2.64912 CCGCGAAGGGAGAAG CCGCGTATTTA ACG TGAAAACGCGG GCGGGCGCAAGTCGG 50 42 COW1_RS10970 NONE COW1_RS10965 NONE COW1_RS10960 2330714 .. 2330727 - -8.1 -5.00616 TTGGCTGTTAAAAAA TGGCG GTTT CGCCA TCATGTAAGTGATAT 90 90 COW1_RS10955 2330231 .. 2330245 - -2.8 -2.73771 CGAGATTTGGTAAAT TCTGAG GCT CTCACA CCGCGAGAATTTTTT 41 79 COW1_RS10950 2328758 .. 2328768 - -2.4 -4.56597 TGGTTGGCGCAAAAA TCGG TAC CCGG CACATAGCAGCAGGG 66 59 COW1_RS10940 NONE COW1_RS10935 2326177 .. 2326210 - -17.7 -3.01791 ACCTGGCTCGTAACA CTGTCACACTGTGTGA CAG TCACACAGTGTGAC-G CCCGTGCATGGCGCG 90 391 COW1_RS10930 NONE COW1_RS10925 NONE COW1_RS10920 NONE COW1_RS10850 2314707 .. 2314720 - -2.3 -3.56862 ACAAATCCGCCGAAA TCTGG TTGC CCAGG CAGCAGTACGACGTC 48 81 COW1_RS10840 2313636 .. 2313652 - -15.1 -3.14132 TCGCGCGTTTACGAA CGGCCCC AGC GGGGCCG TGAGTGCGCGAGACC 85 428 COW1_RS10835 2312791 .. 2312812 - -10.1 -2.52516 TGGCTGACCATGAAG GCTGCCAGG ATCC CCTGGCAGA TCCTCCCTAGCAGCG 62 453 COW1_RS10830 NONE COW1_RS10825 NONE COW1_RS10820 NONE COW1_RS10815 NONE COW1_RS10810 NONE COW1_RS10805 2309995 .. 2310012 - -14.1 -5.18371 TGCCATAAAATAAAA CCCCCGC CGAA GCGGGGG CTACGCCTTCCCTGG 100 164 COW1_RS10770 2302746 .. 2302774 - -3.7 -2.63913 CAGGAGCCTACAGTA GGATGGGTGAAGC GAA GCGCAACCCATCG GGATCCGGCCGGGTG 42 116 COW1_RS10765 NONE COW1_RS10760 NONE COW1_RS10755 2300106 .. 2300127 - -6.5 -4.09739 GGAACTGCTGGAAAA GGACAGCCG CGGG CGACTGTCG GCACCGTTCGATGAG 66 288 COW1_RS10740 NONE COW1_RS10735 NONE COW1_RS10730 2296710 .. 2296739 - -13.5 -4.21933 GGAACGTCAAAACAA CGTCCCCTCTCCC TCAA GGGAGAGGGGCTG TGGCGTTGCTCAACC 95 116 rfbA NONE rfbC 2292214 .. 2292249 - -9.8 -2.78384 GGTCGGGTTAGCACA GCGTAACCCGACA-ACC CGC GACCTGTCGGGTTACGG TGCTGCGCACCTAAC 61 74 rfbD 2291230 .. 2291243 - -5.9 -4.09864 ACCGATGTCCGAAAA GAGCC ATGC GGCCC TTAACGTGGTCTGAG 64 81 rfbB NONE COW1_RS10695 NONE COW1_RS10690 NONE COW1_RS10685 NONE COW1_RS10680 2285117 .. 2285141 - -6.4 -4.11216 CGCTCACCCTGAAAA CTCCCTTGAT GTGAT ACCAGGGGAG CAGGGTGAAGGTGTC 69 194 COW1_RS10675 NONE COW1_RS10670 NONE COW1_RS10665 NONE COW1_RS10660 2281246 .. 2281256 - -5.4 -2.94705 TACAACGGAAGCATA TGAC GTC GTCA GCAACGCAAAAACCA 48 89 COW1_RS10655 NONE COW1_RS10650 NONE COW1_RS10645 NONE COW1_RS10640 NONE COW1_RS10635 NONE COW1_RS10630 NONE COW1_RS10625 NONE COW1_RS10620 NONE COW1_RS10615 2272553 .. 2272563 - -4 -2.57988 AAATGTATGAAGCGA TTGA TTA TCAA TATTCTTAGCCATCT 42 96 xrtD NONE COW1_RS10605 2269182 .. 2269213 - -12.4 -3.11634 CCCGACATCACGCAA CGTCGGATTACGCCC TCC GGGC-TAATCCGACC TACGAATTCCCGTCA 73 44 gmd NONE COW1_RS10595 NONE COW1_RS10590 2263839 .. 2263854 - -6 -3.54543 ATGGACGGTCGCAAA CCGGCC CTGT GTCCGG TGGTTTGCTGCCATT 58 357 prsK NONE prsR 2259937 .. 2259964 - -5.4 -2.69151 TCGTTCTATATATCA CGTCATCCCCGC GAAG GCGGGGATCCAG AGGTCGCGGCGGTTT 46 199 COW1_RS10575 2259216 .. 2259237 - -6.5 -3.8211 CCGCATGGAGAAGAA CACCTTCAG CGAC CCGCAGGTG CAGCAGGCCCTGGCC 62 373 COW1_RS10560 2255574 .. 2255590 - -5.1 -4.57073 CACTCTCCTTAAAAA CCAAAGA TGG TCATTGG GTTGTGAGTGTTAGC 72 452 groES NONE groL 2253512 .. 2253531 - -12.1 -5.626 GATCCCACAAAAAAA CCCCGCC ACAAAG GGCGGGG TTCTTCGTTTCTGAC 100 60 COW1_RS10530 2249812 .. 2249827 - -3.3 -3.55622 GGCAATCTCCTCAAA TGTGA CGGGGT TCACA CGGGGTCCTTAATGT 49 120 glnE 2246868 .. 2246905 - -16.4 -2.74144 GGGTTAGCCTGAAAG GCGTAACCCGACACTC GTCGCG GCATGTCGGGTTACGC TGCGCCAACCCGACC 86 40 COW1_RS10520 2245587 .. 2245597 - -8.2 -3.22298 GGTACCCATGATGAA CCCC GAA GGGG TTCTATGGGAGCCGC 59 326 COW1_RS10515 NONE COW1_RS10510 NONE COW1_RS10505 NONE COW1_RS10500 2242096 .. 2242124 - -7.5 -3.28712 GCGCTTGCGCCATAA CCCATCACC AGGCCGCTGGA GGTGATGGG TTGCGCTGCGCCCCA 56 55 COW1_RS10495 2241616 .. 2241631 - -2.4 -2.52543 ACGCCGTCGAACGGA CGGCCG GGAT CAGCGG AACTCGGTATAGGAC 38 19 COW1_RS10490 2240700 .. 2240727 - -6.2 -3.76952 TGGAGTGAAGCGAAA CCCATCGCCGCGC GCG GC-CTGAGATGGG TTATGGCGCAAGCGC 61 97 waaA 2235836 .. 2235870 - -8.4 -2.7535 CTGCGTAACACAGTA GGATGGGTGGAGGCGC GGT GCGCCGTAACCCATCG CTCTCAGGCCGCACC 58 116 thiC 2226678 .. 2226704 - -8.2 -4.1552 CATGTCGTGAACAAA TCTACTAATC TGTCCAT GATTAGTAGA TTACAAGCAGATGGG 74 97 COW1_RS10430 2225193 .. 2225234 - -15.3 -3.86481 AATAATCGAGAACAA GGGGTCGATGACCAATGACA TCG CGACATTG-TCACCGACCCC TTTACTCATTAACGT 100 56 COW1_RS10420 2223075 .. 2223101 - -15.1 -2.64274 ATGGTCGGAAAGGTA GCCGGAGCGCG GGGAA CGCGCTCCGGA TCAGAGCGGCGTGGT 81 321 COW1_RS10415 2222490 .. 2222523 - -5.9 -2.63715 ATGGATTGCAGACCA TGCAGACGCGAATCGC CTC GCGTGCCGCG-CTACA GTTCGATTACACCGG 46 21 COW1_RS10410 2221721 .. 2221744 - -19.6 -3.18735 GGAACAGGTGAGCAA GCCAGGCGCC ATCA GGCGCCTGGC TCAAATGAGAAAGGT 100 200 COW1_RS10405 2220998 .. 2221016 - -13.8 -4.44667 TCCCCCAACAATAAA CGGGCGCC TGA AGCGCCCG CCTGACGTCAGTCCT 100 284 COW1_RS10390 NONE COW1_RS10385 2216983 .. 2217009 - -3.8 -2.76171 TCCAAGAATGAGAAC GTATATTATTGA TAT TCAATACAATAC TTATATGGCCCCGAT 43 63 COW1_RS10380 2216261 .. 2216302 - -22.5 -4.83615 TATGGGCCAGAAAAA GGCCGATG-CCGTCTGAACC GAA GGTTCAGACGGCCACCGACC GCCAGGCGCACTGCC 100 9 COW1_RS10375 NONE COW1_RS10370 2215390 .. 2215403 - -2.4 -2.61106 CAGATCCACAATCGA GCAA CTGGTC TTGC GTGTCAGCCGGCAGT 38 169 COW1_RS10365 NONE mscL 2214295 .. 2214306 - -5.8 -3.26722 GCCATATGCACAACA GGGT CCGG ACCC CTCAAATCCCGTAAA 51 48 COW1_RS10355 2211451 .. 2211482 - -8 -2.91912 CGAGTCATCCACACA CCGTCGC-GGCAGG TGGATC CCCGCCTGCG-CGG GGATGGCGGGGCGAC 56 61 COW1_RS10345 2209200 .. 2209223 - -9.5 -3.04144 GTCCGAGGCCGAACA GCGTGCGGC TGGCTG GCCGCACTC GTCGACCCGCGCCTG 64 374 COW1_RS10320 2207329 .. 2207373 - -17.9 -3.55447 CGATTGATCAGACAA TCCCGCCGGGCGGCCGCGGA GATGTA TCCACGGC-ACCCGGCCGGA CAGGTGTCACTTGAC 95 32 COW1_RS10300 2201217 .. 2201227 - -2.4 -3.83502 CATTTGCAGATTAAA GTCG GCT CGGC GAGGCAGGATCAGAA 53 213 COW1_RS10295 NONE COW1_RS10290 2197941 .. 2197951 - -6.8 -3.19157 CATGAATGGGAGCAA CTGC GCG GCAG CATGCGCAGTCGCCG 52 475 COW1_RS10275 NONE COW1_RS10270 2194825 .. 2194846 - -14.5 -6.38039 GACTCAAAAAAAAAA GATCACCGC CTGA GCGGTGATC TTCGCTGGCTTGCAC 100 68 COW1_RS10230 2186649 .. 2186680 - -5 -3.49618 TCGGGACAGAACGAA CTGCTGGCGAACCT CGAC ACGCTCGCCTTCAG TCCCGTCCCGCTGCC 52 167 COW1_RS10220 2184228 .. 2184260 - -7 -3.56643 GTCACACCCCTGAAA TCCC-TGGTTCCCGC TTTC GCGGGAATGACGGGA TGAGGAATAATCAGA 60 344 COW1_RS10210 2183130 .. 2183145 - -6.1 -3.42841 ACAAGCCCACGACAA TCCCG CGCCGC CGGGA ACGTGGCGGAGCTTC 56 58 COW1_RS10205 2182504 .. 2182519 - -2.4 -5.00884 AGGGCTGGGAAAAAA CCAGGG AAGT CGCCGG CGCAACCGCTGACTG 79 214 COW1_RS10195 NONE COW1_RS10190 2179453 .. 2179498 - -5.3 -2.63596 CGGTATCGGACAGCA CCCGGGACACCAGATCGACCAG CCC CGGCTCGACCTAGCG-CACGGA CAGGTTCACCGCAAT 46 14 COW1_RS10185 2178925 .. 2178938 - -3.7 -3.14468 TTCCATTACACGTAA TCCCG GCGC CGGGC AACAGTATTTTTGTT 45 97 COW1_RS10180 2175736 .. 2175748 - -9.1 -2.90763 GTTACAGGCCAGATA CAGCC ACG GGCTG TCCGGATGCCGGCGC 59 63 COW1_RS10175 2174250 .. 2174286 - -8.8 -2.52795 AACGCCGTGAAGCCA TGTCCCGGCTGGGCAAGA TGG CCCTGCC--GCCGGAACA GCGCTAGTCGCCCCG 57 29 COW1_RS10160 2173078 .. 2173125 - -2.5 -4.20368 GCAGCCGAACAGAAA GCGGCTGCAGTGCCGGGCGC-GA CCGG TCTAGGCCCGGCGACGC-GACGC TGCGATCACCACTGC 59 5 COW1_RS10155 2172549 .. 2172588 - -10.7 -3.62597 GTCACGGTGCAACAA CTGGAGAACGCGCCGGAC TGAGC ACCCGGCACG-TCTCCCG GCGGATTTTTATTTC 71 34 COW1_RS10135 2169421 .. 2169432 - -4.4 -3.75897 AATCTGCAACCGAAA CAGT CCTG ACTG GGATAGCCGGGCGGG 56 94 COW1_RS10130 2168540 .. 2168571 - -10.2 -2.91274 GGCATCGCAATGACA CGA-CGCGGGCCGG TCAGGG CCGGCC-GCGGTCG AGGGCCGCCTTCAGT 64 7 COW1_RS10125 2167878 .. 2167909 - -2.3 -2.51966 GCAAAGGCCAGCAAG GCGATGCTCAGCAGC AGGC GC-GCC-AGCATCTC AGGGAGCGGATTGCG 38 24 COW1_RS10120 2167360 .. 2167380 - -2.5 -2.82623 GCGCGGCGAGAATCA GCAGGAC CGCCTTC ATCCCGC CTCACTCCTCATGCT 39 27 COW1_RS10115 2166692 .. 2166713 - -2.1 -2.86271 CTGGCATCAGAATGA CTCCGG-GCG GGC CGCGCCGCTG ATCCATGCACAGGCA 39 193 proV NONE COW1_RS10105 NONE COW1_RS10100 NONE COW1_RS10095 2162009 .. 2162019 - -2.4 -3.78953 AGCTTGATCATCAAA CTGC CAG GCGG CCTGAACGATTGCCC 51 285 COW1_RS10090 2161393 .. 2161414 - -2.9 -2.62184 GCGCCTCCCAGATCA GGTCCAGGA TGGA TTCTCGACC GCGGCCAGTGCGGCC 40 1 COW1_RS10085 2160728 .. 2160764 - -5.8 -3.05596 GATGGGTGGAGCGAA GCGCAACCCATTGTTG GTCCG CATCGATGGGTTACGG CGCTGGCGCCTCCAC 49 74 COW1_RS10075 2158176 .. 2158188 - -4.7 -3.25823 GTGGCTGCAGATGAA GGGCG ATC CGGCC ATTCGCAGCGGTCTG 49 515 COW1_RS10065 2155882 .. 2155902 - -7.6 -2.78384 TCCGTGGCCATCAGA TCGCCCGAC TGCG GTCGGG-GA TGGTGCGATTGAGCA 54 0 COW1_RS10050 NONE COW1_RS10045 2148969 .. 2148986 - -7 -3.06796 GCCGAGGGCATCGAA GACGAG ACTCAA CTCGTC TTCCTGTGTCGCGAG 51 242 COW1_RS10035 NONE COW1_RS10030 NONE COW1_RS10025 2141814 .. 2141834 - -14.7 -2.53164 TGAGCGAGGAGGAAT GGATCCGGG ATG CCCGGACCC TGCGCCGGCGCCCGC 71 231 COW1_RS10015 2139613 .. 2139642 - -23.7 -5.87688 AGAACCTAAAAAAAA CGGCCGGTAACGC TCAG GCGTTACCGGCCG CTTATACGTCAGACC 100 52 COW1_RS10005 NONE COW1_RS10000 NONE COW1_RS09995 NONE COW1_RS09990 NONE COW1_RS09985 NONE COW1_RS09980 NONE COW1_RS09975 NONE COW1_RS09970 NONE COW1_RS09965 2129319 .. 2129329 - -2.4 -3.05384 CCCGCCCTCACTCAA CTGC GCT GCGG GCGGTTGCCAGCCAT 41 11 COW1_RS09960 NONE COW1_RS09955 NONE COW1_RS09950 NONE COW1_RS09945 2127490 .. 2127508 - -7.3 -4.52589 CCCGGGCAGACAAAA CCGCCCG CGCCC CGGCCGG CCACCTCCGCCCAGC 76 194 COW1_RS09940 NONE COW1_RS09935 2123998 .. 2124011 - -4.5 -2.66979 TGAAGATCAATGAAG GCAGT CTGG ACCGC GGCATCCGCATCATC 42 196 COW1_RS09925 2122053 .. 2122065 - -10.5 -3.22521 CGGACAGGAATGCAA CGGCC CGG GGCCG CGCGAACTCAATGAC 68 33 COW1_RS09920 NONE COW1_RS09915 NONE COW1_RS09910 2119683 .. 2119694 - -3.6 -3.89822 GATGGACCTGACAAA GCCG TCTC CAGC TTCTATCCTGATCAT 57 376 COW1_RS09900 2118974 .. 2118996 - -6.2 -3.15544 CGGGATCGGCAGCAA CAGCGCCGAA GGC TTCTGCACCG TCGCCGGGACATCCA 51 294 COW1_RS09880 2114980 .. 2115004 - -19.3 -5.40072 GGCCGGGCAAAAAAA GCGGCCCGGAC AGA ATCCGGGCCGC ATTGGGGACGGCAAT 100 76 COW1_RS09875 2113981 .. 2113995 - -9.2 -3.31144 CGGTCACTGGCAGAA CCGCGG CGA CCGCAG CCGACCCGCCTCGCG 66 414 COW1_RS09865 2112648 .. 2112661 - -5.3 -4.4648 ATTTGGATTACAAAA CAACA GGGC TGTTG TCTGCCCACGACGCA 72 454 COW1_RS09860 2111334 .. 2111353 - -16.4 -4.61868 CAGGCACACAGAAAA GCCCCGCC ACAA GGCGGGGC TCAGGCATCCCTGCA 100 77 COW1_RS09855 2110138 .. 2110188 - -13.1 -3.53012 CCTGCCCTCCCGAAA CTGCCGGCACGCCTGCCCGCCGCG AAGT CCCGGCCGCC-GCCGTGCTGGCAG CCTTCGACGCCTTCT 77 425 COW1_RS09845 2108614 .. 2108629 - -3.2 -3.76048 GCTCAAGGAATACAA GCGC GAGATCAT GCGC TTTGCCAGCGGCGAG 56 362 COW1_RS09830 2105865 .. 2105885 - -8.9 -3.12351 GCCCCGCACACCCAA TCCCGCACG GAT CAGGCGGGA GTGGAGCTGGCAGCG 60 16 COW1_RS09825 2105433 .. 2105444 - -3 -4.21908 CATCATCATGGAAAA TTTC CTCC GAAA TCCTTCCATGTTAAC 60 49 COW1_RS09820 2104339 .. 2104361 - -10.5 -2.53271 GGAGCGGGAGAACAC CGGCCCGAA GGAGA CCCGGGCCG TCAGCGCCACCGCGC 56 422 COW1_RS09805 2100387 .. 2100416 - -5.6 -2.70932 CTGGGCGTTGAACTA CGACCGCCTGCTG TTCGG CAGCCGGCTG-CG CTTCTTCCACTATCA 45 377 COW1_RS09790 2097765 .. 2097787 - -13.4 -3.84406 CGGCGACCACAAGAA GGGCGATGTC CTG GGCATCGCCC GGGTGGCCGGGATCA 83 369 moaD NONE COW1_RS09775 2096608 .. 2096637 - -17.3 -2.75963 AGGGTGACGGGAAAC GTCGGGTTACGCCC TGC GGGC-TAACCCGAC CTACACATAACACAT 89 92 COW1_RS09755 2089810 .. 2089834 - -9.2 -3.53012 GTCCCCGCCTGGAAA CTGCGCCGGGC GTTG GCCCGG-GCCG CCCGCCAGGGGCGTG 64 450 COW1_RS09745 2088363 .. 2088410 - -4.8 -3.16191 GCAGAGCCGGATCAA TCGGTTGGAGATTGCCACGGCGC CAG GCGCC-TCGCAATGACCAATCCA GCAGGGATTCGTCAG 47 37 mpl 2086739 .. 2086754 - -2.5 -3.18033 GAGAATGCATCAACA GGTAC GGATCA GCACC GGGCGGGCGAGGTCT 44 120 COW1_RS09735 2085927 .. 2085974 - -8 -3.06183 GTCATTGCGAGCGAA GCGTGGCAATCTC-T-AACTGA TCGATT CCACTTTACGAGATTGCCACGC TTCGCTCGCAATGAC 57 76 COW1_RS09730 2085248 .. 2085299 - -12.2 -2.91681 GCGTAACCCGACACA GGCCGCCGTGCGTGTCGGGTTA-CG CTG CGCTAACCCGACCTACTCGGCTACC TCTGACTGCGCAGAA 71 21 gspG 2078285 .. 2078301 - -2.2 -2.82635 ACGCGCAGCAGGAGA GGAGCT ATTCA AGATCC CAGTTGCCGATATCG 39 13 gspH NONE gspI 2076901 .. 2076945 - -7.8 -2.78816 TGAGGCGCGAGGAGA GCCAGGGCAGGTCGGGTT-GGC GCA GCGTAACCCGACACGCAC-GGC GGCTCCCGTCGGGTT 54 204 gspJ 2076109 .. 2076119 - -5.4 -2.97747 GCTGCATAGGATACA TTCC GTC GGAA GACATGTTTGTCAGC 48 186 gspK NONE gspL NONE COW1_RS09670 NONE COW1_RS09665 2072511 .. 2072533 - -6.2 -2.71263 AATGCCGGGCAACGA TGGGTTACGC TTC GCTTCACCCA TCCTACGCTGCCTGT 49 88 COW1_RS09660 2071467 .. 2071506 - -13 -2.57132 CGTTGGGTTCAGAAG GGTGTAGGTCGGGTTA-GC GCA GCGTAACCCGACATATACC GCGATCCACGTCGGG 71 188 nudE NONE cysQ 2069058 .. 2069068 - -8.2 -4.37886 GCAGGCGGGACAAAA GCGC GAA GCGC GTTGAACGCCCACAG 77 152 rrtA 2060886 .. 2060905 - -12.1 -3.32022 CCTCGTATACAGCAA CGGCCCC GCTTCA GGGGCCG TTGTTTTTTTGCCCC 75 16 COW1_RS09590 2055795 .. 2055809 - -6.4 -3.20435 GCAATGACGGATGAA TCAGAG GCC CCCTGA CCAACTTATCTCAGC 54 36 COW1_RS09585 2055163 .. 2055180 - -2.7 -3.86346 TCAGTGGGTTACAAA GATAATC CACC GATTTTC GCCATGAGGACCAGA 53 162 COW1_RS09580 2054163 .. 2054183 - -18.3 -5.86061 CGGGATCAAAAAAAA CGGGCAGCC CTG GGCTGCCCG TTTTCGATGCCTGCA 100 86 COW1_RS09575 2052753 .. 2052780 - -19.9 -5.64274 TCATTCATAAAAAAA CGCCCGGCAGG TGTTAG CCTGCCGGGCG TTCATCTGTGGCACG 100 122 COW1_RS09570 2051476 .. 2051522 - -12.5 -3.33696 GCGTTCCTGAATCAA GTGGACTCCGTGGCATTGCGCAC ACA ACACGCAATGCCACGGAA-C-AC TGGCTCAACCCGAGA 79 41 COW1_RS09565 2050502 .. 2050540 - -12.3 -5.1356 GGCGAGGAATAAAAA GCCCGGGAACGGAGAGA TAGAT TCCCACCCGTCCCGGGC CCACTTAAACGGCAG 100 59 COW1_RS09560 2049449 .. 2049468 - -10.6 -6.0427 ACTAGACAAAAAAAA GGGGCGGC ATAA GCCGCCCG GCAAGGCCTCGGAAG 100 86 COW1_RS09545 NONE COW1_RS09540 2044596 .. 2044654 - -4.5 -2.75844 CGGCGCAGGTCAAAC CCGGCCGCCACCAGTGCCCACAAGCCCAG ACC CAGGACTT-CAGGCA-TGTCGACAGCCCG GGATCAGGACGTGCC 44 29 COW1_RS09535 NONE COW1_RS09530 2043540 .. 2043577 - -17.9 -2.74144 GGGTTAGCCTGAAAG GCGTAACCCGACAT-CAG TCG CGGCATGTCGGGTTACGC TGCGCTAACCCGACC 89 71 cpaB 2042565 .. 2042594 - -5.1 -2.52464 GGCTTTTGTAATTCA CCAGA-GGTTCC CTAGCGT GAAACCGTCTGG GCACTGCGCTCGGTG 43 7 COW1_RS09520 NONE COW1_RS09515 NONE COW1_RS09510 NONE COW1_RS09505 NONE COW1_RS09500 NONE COW1_RS09495 NONE COW1_RS09490 NONE COW1_RS09485 2033510 .. 2033538 - -4.5 -4.08767 GCCACCCTGGCAAAA CATCTGGCCGGCA GCA TGCCAGCGAAATC CGGGGTATGTCCCGG 62 524 aroQ NONE COW1_RS09465 2030573 .. 2030592 - -4.3 -3.12895 TTTTCCACCAACATA TGCGTTC CTCCCT GAACACA TTAATATTTTTCCGT 45 78 COW1_RS09460 NONE accC 2028657 .. 2028684 - -5.4 -2.58215 CAGGACTAAAGACAT CGTCATCCCCGC GCAG GCGGGGATCCAG CAGCCGCGGCGGTTT 46 140 prmA 2027615 .. 2027649 - -10.6 -3.06418 CCTGGAGAGAAAGTA GGATGGGTGAAGGCGC GCA GCGCCGCAACCCATCG CCGGTAACGACGCGG 66 72 COW1_RS09445 2026714 .. 2026734 - -6.7 -2.85999 GGACGGCACATGATA CCCGCTCGC CCG GAGAGGGGG AAGCACGCCGGTCGG 49 66 dusB NONE fis NONE purH 2023508 .. 2023537 - -6.3 -2.98823 TTGGCCGCAGAGACA TCTGGATCCCGGC ATAC GCCGGGATGACGA GAAACAGACTGGTCA 51 96 purD 2021863 .. 2021873 - -3.2 -2.62936 AATGACGTAATTAAT CAGA GGT TCCG CAATATTCTGTGCGT 40 240 COW1_RS09410 NONE gspC NONE gspD NONE gspE NONE gspF 2012275 .. 2012292 - -6.3 -2.58236 CAAAGGGATATGAAT GGT-GCTC ACT GAGCTACC CGGCCCTTTGAATCG 48 163 COW1_RS09385 2010864 .. 2010877 - -3.1 -4.90778 CCCATTGAAATAAAA GTGAA TCGA TCCAC GGGCCCGGACAGGCC 76 150 COW1_RS09380 2008138 .. 2008149 - -5.8 -2.66733 TGGCAAGGGAGATGA CCGA CCTG TCGG AGGCGGAACTGGACG 44 280 COW1_RS09350 2001598 .. 2001619 - -2.1 -3.33241 GAGTAAGGAGAAAAC CGGGACGGC AACA GCCATCACC CCCACTTACCCGTCA 46 157 COW1_RS09345 1999860 .. 1999892 - -9.1 -2.77701 ACGTCACCAACATCA GCGACGGCG-CCGGC CAGAC GCTGGACGCCG-CGC GCCAGAGCGCCTGTG 55 198 ilvD 1996004 .. 1996024 - -6.7 -3.1247 ATGCTGCAGATGGAA CGCGAGCAG CAG CGGCTGGCG CAGGAGAACGAGGCC 52 454 ampD 1994324 .. 1994346 - -6.1 -2.98223 GAGTGAGACGATAGA GCAGCGCCC CGACC GGGCCCAGC AGGGCAAACCAGAAC 51 456 COW1_RS09320 1993050 .. 1993074 - -12.1 -3.08015 CGAAGGATTCGAACA CCACAGCGAGG ATG CCCAGCTGTGG TACAACCGCGGCTAT 69 302 xthA 1991948 .. 1991964 - -7.2 -3.8448 TAAGATAGCAGGAAA CGCGGC GGGAA ACCGCG TCGGGATCACAGAAT 66 82 COW1_RS09305 1990466 .. 1990484 - -8 -3.8211 CGGCAGGGAGAATAA TCCGGCGC AGA ACGCCGGT CAGGCCGCCAGCTGT 68 25 COW1_RS09275 1986274 .. 1986305 - -15.8 -3.10164 GTACTGATCAGTGAA CGTCCGGGG-GCAGC GCA GCCGCGCCCCGGGCG CACGCCTTTCCCCAC 78 452 COW1_RS09265 1983789 .. 1983801 - -4.8 -3.68962 TGGGAATACATACAA CGTG TGCTG CACG AGCACGATTACAACA 55 172 COW1_RS09250 NONE COW1_RS09245 NONE COW1_RS09240 1977225 .. 1977248 - -9.4 -2.78384 TTGCGTCGCAGGATA CGGTCTCGCC CGCC GGCGTGCCCG GGGCCGGCTGGCACT 61 425 COW1_RS09215 1973535 .. 1973554 - -13.6 -3.07787 AACATGAGGCGAACA GGCAGGTG ATCA CACCTGCC TGTTACACGGCTGCC 79 78 COW1_RS09205 1971532 .. 1971586 - -10.8 -5.40072 CCTGCTGGAAAAAAA GAAAGCCGGCG-AGATCTCCAGGCTGG AAAA CCTGC-TGGAGCTCGGCGCCGGC-TTC TATATCGAGTTCTGA 100 147 COW1_RS09190 1969077 .. 1969112 - -8.2 -3.57144 CCGGGCAGTCGCAAA CCGGCCTTGAGGCC-CT CAG AGCGGTTTCAGGGCCGG TGGGCACGGGCCAGA 62 16 COW1_RS09175 1966969 .. 1966987 - -4.4 -3.29829 TATATCCTGCCAGAA GGCTGGGC GTG GCTCAGTC CTCCAGCCATCCCTG 49 20 COW1_RS09170 1966196 .. 1966247 - -2.9 -3.01712 GCGGCTGGTGGAACA GCCGCCCTACAGTTCGCAGCGCAAC TTCG GTT-C-CTGCGCCCTGGAGTGGGGC TGGATGGCGGCCGGA 42 248 COW1_RS09155 1962746 .. 1962770 - -17.1 -3.90744 GTGGCCCGCAAACAA CGGCGGGGTGC CGT GCACCCCGCCT GGACAGATCCTCGGC 100 58 COW1_RS09150 NONE COW1_RS09145 NONE COW1_RS09140 1959068 .. 1959108 - -4 -3.61164 AAGGTCTCAAAAAAG CACGTA-GGTCGGGTTA-GC GTA GCGTAACCCGACAGCCCGCG GCATGTTGGGTTACG 51 122 COW1_RS09130 1957881 .. 1957892 - -3.6 -2.57132 TTGCTTGTTCAGAAT CCCG TAGG CAGG GTTGGCGCAGCGTAA 42 157 COW1_RS09115 NONE COW1_RS09110 1955431 .. 1955468 - -13.5 -3.36505 ACATGCTATCGATAA TATTTCATGCCG-GGCGC AAA GCGCCTCGGCATGCATTA TGAAATTTCCGTGTT 83 74 COW1_RS09095 1951955 .. 1951972 - -14.1 -3.34043 GGCACCACTGCAGAA CCGGCCG GCAG CGGCCGG TGCGAGCAAACCGCA 87 465 COW1_RS09060 1947962 .. 1947977 - -2.6 -2.68607 CGGAAACAAACACAG TCGT-TG ACT CAGACGA ACAGGGACAGGGGCG 38 18 COW1_RS09055 1946372 .. 1946414 - -7.7 -3.0782 GAACCTGTGAACACA GTGGCATCTG-GATCCCGGC CTGC GCCGGGATGACAGAAAACAC GTAGTCCCGTAGGTC 57 139 COW1_RS09050 NONE COW1_RS09045 1944508 .. 1944523 - -3.3 -3.06515 CCGCAGCCGGAAAAC TGTGA TTGATT TCACA CGCCTGTCCGTCCCC 43 44 COW1_RS09040 1943561 .. 1943592 - -4.3 -2.94726 CGGGAGAAGATGACA TTTCCAGCTCCGG TGATTT CCGAGGCCGGACA GTGTGCAACAGGCGA 44 253 COW1_RS09035 1941976 .. 1941999 - -3.8 -3.59979 CCCGGCGAGTCGAAA CAGGCCAACA TCGG CATCAGCCTG CCCGGCACCGGCGAG 51 328 COW1_RS09025 1940168 .. 1940214 - -10.9 -4.59109 CAGACCGTTGAAAAA CCCTTTATTCCCCTCTCCC-CC GCGC GGTGGGAGAGGGGAATGACATG ATGCTGCCGGGAAGT 93 63 COW1_RS09010 NONE COW1_RS09005 1937426 .. 1937436 - -3.2 -3.10715 GCCACGATCACGGAA TCAC CCC GCGA ACAGGCCCTTCAGAT 43 15 COW1_RS09000 1936179 .. 1936202 - -2.4 -3.2511 CTGCAGGCACAAAAC GTCAACGCCTA TGA TA-GCGTCGGC AATCCTATCAGCGGT 44 101 COW1_RS08985 1928011 .. 1928041 - -4.9 -2.88571 CCGCCCAAACATAAT TATCGCTAATGACA AAAA CATCATT-GCGATA CCTATCCAGCTCTTA 46 254 COW1_RS08980 NONE COW1_RS08975 NONE COW1_RS08970 NONE COW1_RS08965 NONE COW1_RS08960 1921253 .. 1921265 - -6.2 -2.62653 CCATAATTCGAGAAT GGGC CCCCT GCCC CTGCCCCTGCCCCTG 48 390 COW1_RS08955 1919687 .. 1919701 - -5 -3.31511 AACCAAATAGCAATA TTCCCA AGA TGAGAA TCGTATTAGACTTGT 49 44 COW1_RS08950 1918486 .. 1918503 - -2.7 -2.52896 TTACTTTTTAACGCA GGTCT TTCCACCC AGACC ACACAAAAAATGCCC 38 194 COW1_RS08945 1916242 .. 1916257 - -4.6 -3.02144 GGACGTCCCGGAATA TCGGCG TTGA CGCCTA CCGCATCCCTGTGGA 45 457 lexA 1914608 .. 1914620 - -3.3 -2.9155 TCCTCCAACATGATA CTGAC GGG GTCGG GAGATCGGTCAGCGG 42 34 COW1_RS08925 1912773 .. 1912795 - -5.4 -3.29144 CGAGGCCGCCGACAA GGCCACCCAG GCG CTGGAGGGAC TCCCGACGTCGCAGT 51 508 rplU NONE rpmA 1910997 .. 1911018 - -6.5 -5.45802 TCCTGAAAATAAAAA GCCCCGA ACGCACTG CCGGGGC TTTCTCTGCAGCAGG 95 56 cgtA 1909589 .. 1909618 - -4.9 -3.14132 GGTTGCCCCCATTAA TCGTCATTCCGGC GAAG GCCGGAATCCAGA TACCGCTGTGGTCAC 47 148 COW1_RS08895 1908224 .. 1908252 - -16.1 -4.09685 GCGGATTGCGCAAAA GAAAAGGCCGGTC ACT GACCGGCCTTTTG CGTTGGGGTTCCCTG 100 145 murJ 1906069 .. 1906079 - -2.4 -4.11585 ATCCATTATAAAGAA CCTG CCC CCGG GATCATACGTCCCCG 59 28 COW1_RS08880 NONE ribF 1904747 .. 1904786 - -8.6 -4.21471 ACTGCAAAACAATAA TGTAGGTCGGGTTA-GCCC GAA GGGCGTAACCCGACGTGGA GCCGCTCCTGTGTCA 78 197 ileS NONE COW1_RS08865 NONE COW1_RS08860 1900750 .. 1900803 - -6.2 -3.09635 ATTGCGAGGAGCGAA GCGACGTGGCAATCCCGTAAAGCA GAATCAAT TGGTTG--GAGATTGCCACGTCGC TTCGCTCCTCGCAAT 52 120 ispH 1899752 .. 1899798 - -7.9 -2.52543 ACTGCTGGTAAGGCA GGCT-CCGGCGGCCCGGTCAGTC TAG GACTG-CAGGGCCCGCGGCAGCG AAAACACCACCTCTT 53 0 COW1_RS08795 1889039 .. 1889054 - -3.2 -3.18264 CTGTGTATTCATCAA CCTCGCC AAC AGCG-GG CACCGGCAAACCCCG 45 6 thiO 1887901 .. 1887911 - -2.4 -3.35046 CCAGCCCCTGAAACA TGGC CTG GCCG GACCCGATTTACCCA 46 34 COW1_RS08785 1887329 .. 1887357 - -6.6 -3.20991 GTGAAGCGAACGCAA CCCATCGCAGCG GTTGG CGCAATGATGGG TTAGGGCATGCGCCT 54 84 COW1_RS08780 1886719 .. 1886732 - -3.8 -4.03234 GGGTGCTGACATAAA CGGA TCCTTG TCCG GCTCAGTCGTCGCGC 60 28 COW1_RS08775 1885259 .. 1885275 - -2.9 -2.61582 CAGGGTACTCATAAT GAAGCCC GAA GAGGTTC TATGAGCGTAGCGCG 40 221 COW1_RS08770 NONE COW1_RS08765 1882920 .. 1882943 - -8.8 -3.47227 CGCGAATCAGCATAA CCAGCAGCGCC ACC GGCGC-GATGG CGGTGATCACCAGGG 64 80 COW1_RS08760 1881532 .. 1881581 - -4.9 -5.27923 TAATTGCATAAAAAA CGGACGTAGGTTGGGTCA-GGTGC ACA GCACCGTAACCCAACATGCCGCGG GTTGTCGGGTTACGC 86 253 asnB 1879400 .. 1879453 - -8.7 -2.87132 GGCGGTCTTTAGATA CCCCCTCACCCTGACCCTCTCCCCCT GAT AGGGGGAGAGGGG-ATTGTTTTGGGG TCTCTCTCAGGCGGC 59 32 COW1_RS08750 1879192 .. 1879208 - -7.2 -4.8048 CGTCTACATGAAAAA GCCCAC TCGCG GCGGGC TTCATCAACTCATTG 84 47 COW1_RS08745 1875484 .. 1875502 - -11.7 -5.07275 TGACAGACACAAAAA GGCCACC GTAAA GGTGGCC TTTTCCAATAAGGGG 100 113 COW1_RS08725 NONE ntrB NONE COW1_RS08715 NONE cynS 1868037 .. 1868082 - -7.6 -2.55544 CGAGGAGCGAAGCGA CGTGGCAATCTCTAACCG ATTAATTCTG CTGTATGAGATTGCCACG CTACGCTCGCAATGA 53 102 COW1_RS08705 1866682 .. 1866717 - -6.8 -4.53034 GTGACAGAAGGAAAA CTTCC-CGGCGCGAAGC AAT ACTTCGCACTGAGGCAG GGGGTGGGGCAGCCC 76 59 COW1_RS08700 NONE COW1_RS08695 1865436 .. 1865449 - -4.5 -3.00946 TGCCTGTAGAAACGA CACCG GATT CAGTG GCTTGGTGGAATTGC 46 146 COW1_RS08690 1863719 .. 1863733 - -2.8 -4.30978 CCGAACGTATGAAAA TCATGA TGA TCAGGA TTCCAGGGCTCGCAA 64 171 COW1_RS08685 NONE COW1_RS08680 1859243 .. 1859265 - -6.3 -4.48221 TATCAACCTACAAAA CCATGTCAG ACAAA CCGACATGA CAGTCACTGCCGCAT 74 138 COW1_RS08675 1858269 .. 1858315 - -7.3 -3.9749 ACGGACAAGAGTAAA TGCTGTTCACGTTGCC-GGGCGC ATA GCGCCCTGGCAACGC-AGTAGGA TTTTCCGTGCTTTCC 68 83 COW1_RS08660 1854194 .. 1854240 - -17.4 -2.9953 TCAAGGAGAACCACA TCGCCGCCGCC-GGCTCGATCGC CGCG GCGATCG-GCCAGGCG-CGGCGC CTGCACGCGAGCCTG 82 392 COW1_RS08635 NONE COW1_RS08630 1848491 .. 1848508 - -5.5 -4.16904 AATATTACAGATAAA TGACAGC CTGC GCGGTCA GAAGTCATTGGGATT 66 63 phoB NONE phoR 1846330 .. 1846348 - -3.8 -4.17089 TGTAAATGTGGAAAA CCCGATGT CAG ACATCATG AGGAGAGATTCTGCG 62 83 COW1_RS08615 1845259 .. 1845282 - -19.6 -5.14563 CGCTGCATGAAAAAA GCGGCCTCCG TCAC CGGAGGCCGC CTGTCTGTCGTCCCT 100 60 ppx 1842956 .. 1842975 - -3.4 -4.60487 CACCATTCTGAAAAA CGGCATCG AATT CGCCGCCA CCTATTTCATCATGC 71 183 COW1_RS08575 1836366 .. 1836414 - -13.1 -3.38812 TCGCGGTGAAGAACA TCATCGACCGGCGCCGCGC-CCG CCGAC CGGTGC-CGGCGGCGGCCGGCGA GGCCGCCACGGCCTG 79 52 apbC 1827691 .. 1827718 - -16.3 -5.24531 ACCGCCCACAAAAAA CCGGCCCAGAG TATAAC CTCCGGGCCGG TCCTGTGGCGACTTC 100 50 COW1_RS08530 1826678 .. 1826690 - -2.6 -4.30576 GCTGGAGCAGGAAAA CCGC TTCCT GCAG GAACACATCTCGATC 65 414 gnd 1819999 .. 1820009 - -6.8 -3.53012 TGTCTGTCCGCCAAA GCTG ATT CAGC GCTTCTCCACCGCAT 60 21 COW1_RS08505 1818448 .. 1818489 - -6.5 -3.08312 AACCCATCGACTCAA CGCGTCATGATGGGTTGCGC TGC GCTCCACCCATCCT-ACCCG GCTTCAGCCATCCGT 52 29 pgi NONE COW1_RS08495 NONE rnpB 1815766 .. 1815801 - -4.7 -2.79831 GCAACGTGGACGAGA TTGCCGCGTCACTTCG TTCCT CGCAATGACG-GGCGA GTCAAATCGAGCCGG 44 29 miaB NONE COW1_RS08480 NONE ybeY 1812577 .. 1812600 - -6.8 -2.76322 TCAGGGAACACATGA CAGTTCATCC ACGG GAATAAACTG TGATCTGATCCCTTA 51 238 COW1_RS08470 NONE lnt NONE COW1_RS08460 1808959 .. 1809014 - -3.3 -3.4642 GCCAAGCAATAAAAG GCGGTTC--CGTAGGTCGGATTA-GCCC GCA GGGCGTAATCCGACGCCCGCTGCAACGC TCCGCCGCCTGTCGG 47 83 COW1_RS08450 NONE COW1_RS08445 NONE COW1_RS08440 1803753 .. 1803771 - -3 -4.56597 CTGCTCCTGGAAAAA CCAATCCG CCA CGGAATCG CACGCGTTTCCAGCT 69 173 COW1_RS08435 NONE nadD NONE rsfS NONE rlmH NONE maf 1800173 .. 1800217 - -11.6 -3.06501 CATACCCGCACCGAA CCTCGTAGGTTGGGTTA-GCCC GGA GGGCGTAACCCAACATTC-AGG CCGCGTTTGTTGGGT 69 108 rng NONE COW1_RS08405 1794772 .. 1794807 - -13.1 -2.87468 GTGCAGCATATCACA GGCCGGGGCAGGGCC GGTCAT GGCACGGTCCCGGCC GGGGCCGCCCCGGGC 74 7 COW1_RS08400 NONE COW1_RS08395 1793563 .. 1793586 - -4.6 -2.56596 CCGGCGATGAATTGA GTGTAG-CAGT GTT ACTGACTGCAC TTGATCCGGCGATGC 43 13 tldD NONE sugE 1791437 .. 1791452 - -8.2 -2.75064 GTCGGGATGGAATCA CCCCGG AGAC CCGGGA AACCTTCACACGTCT 54 222 COW1_RS08380 NONE COW1_RS08375 NONE COW1_RS08370 1789281 .. 1789293 - -3.3 -4.04482 GGGGCGAAAAAAAAC GTGGC ACC GACAC CGGCTCCGGCTGAAA 58 172 COW1_RS08365 1786457 .. 1786473 - -6.5 -3.65294 GCTGATATAAATCAA CCGGC GCGGCCT GCCGG CAGCCGTCACCGCAC 61 32 COW1_RS08360 1785948 .. 1785970 - -15.6 -2.73721 ACGAACCCTGAATTA CCCTCTCCCA GGG CGGGAGAGGG CGAAGGGACGACAGC 83 54 pmbA NONE COW1_RS08345 1783452 .. 1783497 - -2.7 -4.08692 GAAGGTGGGTTAAAA CGCCCCGAAGCCTGACATGGAC ACATG ATCCATG-CAGG-T-CGGGTCA GCCGCAGCGTAACCC 56 112 COW1_RS08335 1781135 .. 1781145 - -8.2 -3.04144 GGCGGATGCGCAACA GCGC GCA GCGC GGACACTGCATCAGC 57 36 COW1_RS08330 1780424 .. 1780452 - -13.1 -2.88544 TGTGATTTCCACACA GGTTGGGCTGAGC CAC GCGAAGCCCAACC TACAATGGTTTGTCA 74 140 COW1_RS08240 NONE mlaE NONE mlaD NONE COW1_RS08225 1764683 .. 1764704 - -2.1 -3.19246 TGAAGGTGAAGGTAA TGGCACCGGG GAT CCCCG-GCCG GTTCAGTCCCGCGCC 44 28 COW1_RS08220 NONE murA NONE COW1_RS08210 NONE hisD NONE COW1_RS08200 1759748 .. 1759759 - -5.8 -3.4072 CAGGGGGCAGGATAA GGCT AAAG AGCC CTAGTCAGGTCTGTG 53 118 COW1_RS08180 NONE COW1_RS08175 NONE COW1_RS08170 NONE hda 1753271 .. 1753310 - -20.2 -3.37975 AGGGACGAGCTATAA CGCAGGTCGGGTCA-GCCT GAA AGGCGTAACCCGACCTACG TACTGCACCGCTGCG 100 86 COW1_RS08145 1751415 .. 1751435 - -4 -2.61912 GCACTGACGCAGAAG TCCGTTCCC TGTC GAG-ACGGA TGAGACAACCGGTTT 42 40 COW1_RS08140 1750484 .. 1750501 - -14.1 -5.626 CATCGCATAAAAAAA CGGGGCC TTGC GGCCCCG TCTGCGAGTTGATCG 100 52 COW1_RS08130 NONE COW1_RS08125 1747608 .. 1747635 - -3.4 -2.62613 GGGCAGCGCAAACAC CGCG-GGCATGC GTATCA GC-CGCCACGCG CCTCGCTGCGGCGTT 40 12 COW1_RS08120 NONE COW1_RS08115 NONE COW1_RS08110 1744856 .. 1744872 - -9.3 -3.71848 CGTGCGCACCAACAA GCGCCTG CAG CGGGCGC GCCGGCGGGTGGAAC 68 355 rpoE NONE COW1_RS08095 1742147 .. 1742171 - -2.1 -2.57931 GGGACGCGGGAGAAG CGGAGCATGC GTCAGT GC-TGCTCCC GGTCATAGCCCACAA 38 12 COW1_RS08090 NONE COW1_RS08085 1740597 .. 1740613 - -11.5 -3.43033 CATCAATATACAACA CCCGGCC TGA AGCCGGG CTGAACAGCCTTCAG 73 37 COW1_RS08080 1739065 .. 1739102 - -22 -3.55444 GGGTCATGGCCGAAA CCCGGTGCGGCCCCGG GGCGAA CCGGGACCGCACCGGC GGCGGCTTACTCCGG 100 32 COW1_RS08075 NONE lepA 1736795 .. 1736827 - -8.4 -4.08571 CTATAAGACCAGAAA CGCCGTCATCCCCGC GCAG GCGGGGATC-CAGCA CCCGCGGCGGTTTAT 75 101 lepB NONE COW1_RS08060 NONE rnc NONE era 1733732 .. 1733759 - -7 -2.78384 TTCGCCCGGATTACA TGTCGGGTT-ACG CTG CGCCAACCCGACC TACGGGGCTGCGGGA 51 114 recO NONE pdxJ 1732119 .. 1732132 - -2.3 -2.69799 CGATGCCATAGATCA GAGCC ATCG GGTTC AGCGCCGCGCCGCGA 38 24 COW1_RS08035 1731307 .. 1731334 - -9.8 -3.55563 ACCGTATCTGGGAAA GTGTGCGGCGCTG GAC CCGCGCCACAC-C TGCCGCGCCCGAGCC 67 424 cysM 1724940 .. 1724952 - -5.5 -3.62704 CAATACAAGGAAATA CCAAC GGC GCTGG CGCAGGAGCGGGCGC 55 45 COW1_RS08010 NONE COW1_RS08005 NONE COW1_RS08000 NONE rlmD 1719942 .. 1719982 - -11.2 -2.61582 GATGGGATGCAGAAC CCG-GTGGGTCGGGTTA-GC GCA GCGTAACCCGACACTCACGG CGGGAAGGTCGGGTT 66 80 nudB 1712334 .. 1712357 - -10.2 -3.87641 AACAGGCTCCATAAA GGACCCGGCC GCGG GACCGGGTCA GCCCTTCATCGGCGC 77 67 COW1_RS07960 NONE COW1_RS07955 NONE ruvC NONE ruvA 1708796 .. 1708831 - -4.6 -3.53563 ACATGGTCCGCGAAA CCTGTCGGGTTACGCCC TCA GGGC-TGACCCGACCTA CGGTTATGCCCCGTC 53 54 ruvB 1707553 .. 1707578 - -6.7 -2.88249 GATATCGCTCAGACA TGGATGCCCGC CTTC GCAGGCAACCG GCGCCTGCCCGCTGT 51 41 ybgC NONE tolQ NONE tolR NONE tolA NONE tolB NONE pal NONE ybgF 1702217 .. 1702259 - -7.5 -3.12351 CGGCGGCAGATCCAA CCGGCCGGA-CGGCCCGGCC TAAC GGCCTTCCCGGTTCAGCCGG GCCAGCCGCTCCTCG 54 1 queE NONE queC NONE COW1_RS07890 1699474 .. 1699489 - -8.2 -2.73067 CCGAATCATACAGCA GCCCGC CACC GCAGGC AAAGACGGCGTGCTA 54 38 COW1_RS07885 1699337 .. 1699367 - -16.9 -5.71712 GTTGAGACAAAAAAA TACGGCGTCCACG TGGAT CGTGGACGCCGGA GATGGTGGGCCGTGA 100 28 COW1_RS07875 NONE COW1_RS07870 1696429 .. 1696444 - -3.2 -3.3903 GAAGTATTGAATCAA TCCAGC GGCT GCTTGA TGCTCACCGCACCGC 47 6 COW1_RS07865 1696192 .. 1696213 - -4.3 -3.21099 GCCTGTGAGTATCAA CCGTCCAGCG TGT CGC-GGTCAG CGGCGCCGCTGTTAT 47 0 COW1_RS07860 NONE COW1_RS07855 NONE cydB 1693172 .. 1693186 - -2.8 -3.61356 AGGATCCAGGTGAAA TACCAC ATC GTTGTA TCCTCTCTCTCAATA 49 35 cydX NONE COW1_RS07840 NONE COW1_RS07835 NONE COW1_RS07830 NONE COW1_RS07825 NONE COW1_RS07820 NONE COW1_RS07815 1688174 .. 1688197 - -4.4 -2.79183 CCGATCTGCAGCACA CGCCGGTGGA TCGT TCCGCCTACG AGACGCTGCTGAGGG 43 162 COW1_RS07795 NONE COW1_RS07790 1685036 .. 1685055 - -7 -4.89966 ACACGGAAAAACAAA CCGGGACC GAGT GGCACCGG CATATGCTCAAATGC 87 191 COW1_RS07770 1681805 .. 1681827 - -6.8 -2.56596 TCTTTGATTAATTGA GGCGGGCGCC TGC GACGACCGCG CCATTGCCTACGGCT 50 107 COW1_RS07765 NONE COW1_RS07760 NONE COW1_RS07755 NONE COW1_RS07750 NONE COW1_RS07745 NONE COW1_RS07740 1673818 .. 1673828 - -2.4 -3.42503 CCTCAAGATTCATAA TCCG CTC CGGT TGCGATAACGCAGCA 46 9 COW1_RS07735 NONE COW1_RS07730 NONE COW1_RS07725 1670768 .. 1670778 - -2.4 -3.33815 ACCGGGCCGAATGAA CCGC TAG GCGT ACAACCGGCTGTACA 46 18 metE 1662689 .. 1662720 - -4.3 -3.96624 TATTGTTAGTAGAAA GAGC-GGGCAGCAG GACGG CAGCCGCCCCACCC GTCACATGGCCGTGC 60 159 COW1_RS07700 NONE COW1_RS07695 1661001 .. 1661046 - -11.2 -2.61216 CGAGGAACGAAGTGA CGCGGCAATCTCTGACCG GCTGATTTTG CGGTATGAGATTGCCACG CTTCGCTCGCAATGA 66 114 COW1_RS07690 1658485 .. 1658501 - -2.9 -3.85817 AGCCGCGTTCAGAAA TCGAGCT CGT AGCTCAG GGTGAAGGTGCGCCC 55 2 COW1_RS07685 NONE COW1_RS07680 NONE COW1_RS07675 1656186 .. 1656199 - -3.7 -3.68351 GCGCCATTAGCGAAA GGGGG CGAG CCACC GCAGCCAGCCGGGCT 54 3 COW1_RS07670 NONE COW1_RS07665 1652904 .. 1652928 - -11.3 -3.72576 GCCTGCGTGACGAAA TGGCCGCCGCC ATC GACGACGGCCT CACCCTCAGCGAGGC 73 402 COW1_RS07625 1645038 .. 1645069 - -8.1 -2.73721 AGCAATTTTGAAGTA CGCACTTATACGG GATGAT CCGTATAAACGCA AGTCCGGCCCGACGC 54 98 COW1_RS07620 1644633 .. 1644650 - -14.1 -5.5112 GCCACCAACAAAAAA GCCCCGC TGAT GCGGGGC TTTTTTTGCTGCCGT 100 75 COW1_RS07610 1641349 .. 1641374 - -19.1 -3.18452 AGGACCTGAACGCAA CAGGGGCCATG TCAC CATGGCCCCTG TGCCGGCGTGTTCCC 100 75 COW1_RS07605 1640289 .. 1640306 - -14.1 -5.72616 ACGGACACAAAAAAA GCCCCGC TGTC GCGGGGC TTTCGAGCTGGATCC 100 57 COW1_RS07600 NONE COW1_RS07595 1637600 .. 1637628 - -13.2 -4.07568 TGTGTGTCCTGAAAA CGACAAACCCGCC TTAA GGCGGG-TCGTCG GAGAATCGTACCGGG 91 57 COW1_RS07590 NONE COW1_RS07585 1633186 .. 1633196 - -2.6 -3.65782 CAGCAAACGAGAGAA TATA AAA TATA TTAATGTGGCTATCC 51 43 COW1_RS07580 1632010 .. 1632057 - -6.2 -3.30619 AAGCAGCTTCCAGAA CCTGTA-GGATGGGTGAAGGCGC GCC GCGCCGCAACCCATCAGCACATG CCGCGCCATGATGGG 54 73 COW1_RS07575 NONE COW1_RS07570 1630086 .. 1630108 - -4 -3.61715 CACCTTTCTGAACAA GTTCCTCATC ATC GACGAGGCTC AGAACCTGACCTCCA 51 434 COW1_RS07545 1625651 .. 1625663 - -10.5 -3.32844 TGCTTCAGTCCACAA CGCCG GCC CGGCG CAGGGCTTCGGTCAC 69 2 bamC NONE COW1_RS07535 1623616 .. 1623656 - -2.6 -3.72893 GATGGGTGGAGCAAA GCGCAACCCATCATTGG TAGGTGGT CCG-TGATGGGTTACGG CGCCACGAGGCGCCT 51 70 purL 1619425 .. 1619455 - -4.7 -2.64243 TGATATTTCAGACCA TTGTCCGCAGATGC CATG GCATA-GCGGACAG CCTGCTTTGTTATTT 43 184 msrP 1618246 .. 1618262 - -3.6 -3.45849 GCCATAGGAGCAGAA CAGGCA GCAGT CGCCCG GGCGCGGCCGCAGCA 49 164 COW1_RS07520 1617563 .. 1617577 - -2.8 -4.3295 CGGAAGAAAATTAAA GCGA TTTATTT TCGC CCTGACGATTCATTC 64 6 COW1_RS07515 1616962 .. 1616978 - -2.9 -2.53876 CGCGACCGGAACCGA CTTGAGC GCT GCCGAAG CGATGGCAGAGAACT 39 354 COW1_RS07500 1613470 .. 1613480 - -2.4 -4.08767 CTGAGTTGCTGAAAA TCGG GGC CCGC GCGTGCGGTTGTTCG 56 385 COW1_RS07495 1612135 .. 1612180 - -14.4 -3.07233 GCACAAGTCGCAAGA TGCAGGATGCAAGCATGAGCAAG CGA CTTGC-C-T-CTTGCATCCTGCA TCTTGAATCTATTGT 83 34 nrdR 1611562 .. 1611580 - -4.4 -3.05384 GCGCGGCTCATGTAA CGGATGTC GTC GGCGTCCG CCACCTGCGCTGAGT 47 52 ribD 1610333 .. 1610359 - -3.7 -2.75343 CCTACATGGCTAAAC CGTCATTCCCGC GAAG GCGGGAATC-CA TTATCCGCTGTGGTT 43 150 COW1_RS07480 NONE ribB 1608291 .. 1608324 - -7.5 -2.87132 TCCTTCGGTTATACA TTCGTCATTGCGA-GC GAA GCGTGGCAATGACGGA ACAATTCAATCCGGC 53 31 ribE NONE nusB NONE thiL 1606219 .. 1606265 - -5.1 -2.87132 CCCCTGTGGCAGACA CGCAGTAGGATGGGTGGAGGCAC CGT GTGCCGCAACCCAT-CAACAG-G TCGTACCACGATGGG 46 62 COW1_RS07455 NONE COW1_RS07450 1604569 .. 1604589 - -5.4 -3.18383 ATCTGGATCGAGGAA CTGATCGA ACTGG TCGAGCAG GAAGCCTCGTGCGAA 49 350 COW1_RS07410 NONE COW1_RS07405 1596018 .. 1596028 - -6.8 -4.91109 CCCTTACCACAAAAA CCTG ATA CAGG TGCGTATCACGCACC 87 111 COW1_RS07400 NONE COW1_RS07395 1591106 .. 1591148 - -18.6 -3.27525 GCCCGGGAAATCCAA GATCAGCCCGTCATGCCG GCCTGAT CGACATGACGGGTTGATC AGCACAGGGTCAATT 100 35 katG 1588517 .. 1588568 - -12.1 -3.17075 CCGTTGCGAAGTCAA GCGGACGGCCCGCCCGGCTCGCAG GGACG CTGGAGGCCGGGCGG-CCTCCAGC GCAGGAGCGGCATCG 73 42 COW1_RS07385 1587944 .. 1587967 - -19.6 -4.48713 CTGAGCAATAATAAA CGGGGCCGGT TGAT ACCGGCCCCG GATGGTGCTTCTTCA 100 57 COW1_RS07380 1586286 .. 1586317 - -10 -3.59262 TGGCAGAGCTGCAAA CGCTGGATCCCCGC CTTC GCGGGGATGACGCG GCAGAAGTAGTGCCA 71 91 COW1_RS07375 1585546 .. 1585556 - -2.4 -3.38291 CTGACAAGGCCACAA CGCC GTG GGAG AGCCAGTGTCAGTCC 46 34 COW1_RS07370 1584896 .. 1584909 - -2.3 -2.75844 TGGCTCATGGGAAAC GGATC AGGC GGTCC TTGTCAGGGGTCATC 39 29 parE 1582814 .. 1582824 - -6.8 -2.57877 CGGACAAAAATAATG GCAG GAA CTGC TGAGGGTCTGCCCAA 50 197 parC NONE COW1_RS07355 NONE COW1_RS07350 NONE COW1_RS07345 1574814 .. 1574858 - -15.2 -4.17023 TCAATCATCCTAAAA GGGGTCGGTGACAAAACGCAA TCGT TCTCATTT-GTCACCGACCCC TTTTAATTGTCGCGG 95 524 htpX NONE COW1_RS07315 1566107 .. 1566117 - -6.8 -3.17075 GCCGGGTGAAGCTAA CGCA GAG TGCG TAGGATGGGTGAAGC 54 237 COW1_RS07305 1562761 .. 1562779 - -9.5 -2.83403 TCCGCTGGATGAAAT GCCCCCC GGGCA AGGGGGC CGAACTGGGCGTGCA 56 523 efp 1559427 .. 1559461 - -12 -3.28791 AGCGCCGCGGCACAA GCGAGCCTGCGAGCGC AGA ACGCCCGCAGGGCGGC CCCGAAGGGGTGAGC 75 126 genX 1558154 .. 1558164 - -8.2 -4.37886 GCAGGCGGGACAAAA GCGC AGA GCGC GTTGAACGCCGGTAT 77 237 COW1_RS07280 NONE COW1_RS07275 NONE COW1_RS07270 NONE COW1_RS07265 NONE trmJ 1553799 .. 1553817 - -7.4 -3.48276 TCCGTGTCGATATAA CCGGCA TTGTACC TGCCGG AACGGCGGGGTGACA 60 51 cysE NONE COW1_RS07250 1552355 .. 1552395 - -9.7 -2.68823 CGTGGCGCAGACAAG CCCGCACC-GCGCC-ACGC GGCAA GCGTCGGCTCAGGCGCGGA TCGGGTCGAAATGGA 60 15 iscX 1552024 .. 1552041 - -12.7 -4.35348 ATAATATAACATAAA CCCGCGT GGTG ACGCGGG TTTGACCGGAAAGGG 93 75 ndk 1551516 .. 1551526 - -2.4 -2.82516 CGCGGCATCAGCAGA CGCC GGG GCCG GATTTCACTCCTTCA 39 38 rlmN 1550369 .. 1550389 - -6.1 -3.0497 ACAGCAGCGTGAACA GCCCGTG CCTCATC CACGGAC CTCCTGCACCGCCAC 52 14 pilW NONE COW1_RS07225 NONE hisS NONE COW1_RS07215 1546624 .. 1546659 - -3.8 -2.74523 CCAGCGTCAACAGCA GCAGGGGCAGCAGAAC ACGC ATCAGGCCGCCCCTTC CCCGCCGACGCGGGC 43 11 bamB NONE der NONE dauA 1542130 .. 1542174 - -15.1 -5.41746 AAGGTGGGAAAAAAA GGGGTCGGTGACAAAACGCAA TCA TTATCATTTGTCACCGACCCC TTTTAAAGAACATCA 100 38 COW1_RS07185 1538267 .. 1538277 - -3.2 -3.2794 CTTGACCGATATCAA TCGC CGG ACGA ATGCATCACCGGATC 45 11 nifJ NONE COW1_RS07175 1533208 .. 1533221 - -5.3 -3.78934 CGCCGTGGACAACAA TGATG CAGC CATCA TCCGCGCCATCATCG 60 341 guaB 1525889 .. 1525934 - -11.2 -3.53811 GTCATCCCCGCGAAA GCGGGGATCCAG-GCCTTG TTTATCCTG CCAGGCACTGGATTCCCGC CTGCGCGGGAATGAC 74 134 guaA 1523997 .. 1524012 - -3.3 -4.84761 ATAGTTTCAGAAAAA CAGTA CTGTTT TACTG AAGCACTGTGCTTGA 73 242 COW1_RS07145 NONE COW1_RS07140 1523107 .. 1523122 - -4.6 -4.08394 ACAGCTTCGCGAAAA CGCTGG CATG CCAGCC TTGATACCTTCCAGC 62 110 COW1_RS07135 1522700 .. 1522710 - -5.4 -2.92255 TTAATAGACAGGACA GACA CGC TGTC GCGCCGTGGAAATAG 48 61 COW1_RS07130 NONE COW1_RS07125 NONE COW1_RS07120 NONE COW1_RS07115 1519525 .. 1519559 - -10.1 -2.62396 GACGGTGGCACAGGA TCCGGCAC-CC-AAGGT GGC ACCATAGGCGTGCCGGA AGGTGAGCCGGAGCT 62 58 COW1_RS07110 NONE COW1_RS07105 1517458 .. 1517474 - -2.1 -3.71378 GACGTGACAGTGAAA GTCGATC ATC GAACGCC TGCCGCCGTTAGAAA 51 14 COW1_RS07100 1516544 .. 1516560 - -8 -3.18199 GAATGGGTAATCCAA CTACGG TCAAT CCGTAG AGTATGAGGGGGCTA 59 200 COW1_RS07095 NONE COW1_RS07090 NONE COW1_RS07085 NONE COW1_RS07080 NONE cadA 1511084 .. 1511096 - -3.3 -3.86015 CAGTTGTGCGATAAA CCGGA TCA TCAGG CCCTCAACATCCTTA 55 21 COW1_RS07070 NONE COW1_RS07065 NONE COW1_RS07060 NONE COW1_RS07055 NONE COW1_RS07050 NONE COW1_RS07045 NONE COW1_RS07040 NONE COW1_RS07035 NONE COW1_RS07030 NONE COW1_RS07025 NONE COW1_RS07020 NONE COW1_RS07015 NONE COW1_RS07010 NONE COW1_RS07005 NONE COW1_RS07000 NONE COW1_RS06995 NONE COW1_RS06990 1495494 .. 1495506 - -2.7 -2.60075 GCTTTTCCAATGAAC CAAAA CCC TTCTG TGATCATTCGTAGAG 38 47 COW1_RS06985 NONE COW1_RS06980 NONE COW1_RS06975 1493540 .. 1493561 - -9.4 -2.92777 TTCGACAGATCAAAG TCACGCGC TCGCAT GCGCGCGA GGCGTCAAAGCAACG 62 54 COW1_RS06970 NONE COW1_RS06965 NONE COW1_RS06960 NONE COW1_RS06955 1487585 .. 1487599 - -2.8 -3.61398 CTCCGTCGTTAACAA TGATGT CCG ACCTCA GTCCTCGCGGACCGC 49 50 COW1_RS06950 NONE COW1_RS06945 1486440 .. 1486455 - -4.6 -3.85698 CCGTCCGTCGAGAAA GCACGC CAGG GCCTGC TCGGCCAGGCGCCGA 59 275 COW1_RS06940 1485849 .. 1485861 - -3.3 -3.22874 CGCGATAGAACAAAT CGGTC GGC GACGG GTCCGTTTTCGTCCC 45 71 cadA 1483351 .. 1483376 - -3.3 -2.72344 GGTGATGGGTAATCA CGTCAACCGC CCAAGTC GCGGT-AACG CAGCAAACGCAAGGC 41 2 COW1_RS06920 1480685 .. 1480698 - -5.9 -3.85698 CCTCCCTTGGACAAA GGCGC ACAT GCACC GCCAACCAACCGATA 61 323 COW1_RS06915 1479452 .. 1479465 - -2.3 -2.65815 GTCAGACTTATATGA CCCAG CAGG CCGAG AATGTATTCTACCGC 38 268 COW1_RS06890 NONE COW1_RS06885 1475772 .. 1475792 - -2.4 -3.76373 TCCGGAATAGCCAAA CAGCGGGA ATCGA TCCCGTAG AGGCTCATGACCAGA 51 141 tadA 1475080 .. 1475110 - -8.2 -2.83164 GCAGCTACTACGACA TCCTGGTCTGGTAC ACC GAACGCGACCAGGA ACCGGTGCCCTCACC 54 71 COW1_RS06870 1473004 .. 1473021 - -14.1 -4.96848 TCCGCCATATAAAAA GGGCCCC GGTT GGGGCCC TTTTTATATGGCGGA 100 34 COW1_RS06860 1471391 .. 1471406 - -6 -4.37886 TCAGCGGGGATAAAA GGGGGC CGCC GCGCCC TGGCTAAGTCGGCTA 72 96 COW1_RS06850 1469439 .. 1469497 - -4.4 -3.01712 GCGGCGGCGGCAACA GCCTGAGTGACAGCGGCGGCGGTGGCGGC GGCT GCAGCCTCGGCCGGCGCGG-CACCCA-G- GATCCTCTGTTTCCG 45 153 COW1_RS06840 NONE COW1_RS06835 NONE COW1_RS06830 NONE COW1_RS06825 NONE COW1_RS06820 NONE lptF NONE lptG 1458021 .. 1458040 - -5 -2.52516 GCGGTGATGACGAAG CTGAAGCA AGCC TCCTTCAG TCCCGGTGCCCACTC 43 39 COW1_RS06805 1455984 .. 1456001 - -11.3 -2.53263 GCTACGGCCAATGGA TTCCCGC CTGC GCGGGAA TGACGGAAAAGGGAA 65 146 COW1_RS06780 NONE COW1_RS06775 NONE COW1_RS06770 1449073 .. 1449101 - -10.9 -2.59431 CGGCCGGACAATTGA TGGGTTACGGCGC AAT GCGCCTCCACCCA TCCTACCCGGCTACT 66 36 COW1_RS06760 1446805 .. 1446842 - -9.3 -2.52464 GGTCGGGTTAACGCA GCGTAACCCGACA TCTCGCGGTCCG TGTCGGATTACGC CCTCGCGGGCTAATC 59 65 COW1_RS06725 1438527 .. 1438537 - -6.8 -3.07895 CGGAGGGGGAAGAGA GTCC CCG GGAC AGCGCCACCCGTGGT 51 387 COW1_RS06700 1434093 .. 1434119 - -15.1 -3.94812 TGCCAGGCAAAAAGA GCGGGGCAGAC ACCTG GGCTGCCCCGC GTTCACGCTCACAAC 100 50 COW1_RS06695 1433449 .. 1433459 - -8.2 -4.37886 GCAGGCGGGACAAAA GCGC GGA GCGC GTTGAACGCCTTTAT 77 208 COW1_RS06685 1430739 .. 1430772 - -3.8 -5.59502 GAAAAAATGAAAAAA CGCGAACAGTCG-GGG CAGA CCCGCGACAG-CCGCA TCTGCGCCACCGACC 95 165 COW1_RS06675 1429002 .. 1429021 - -2.8 -2.53876 CTTTATGCTAATGGA GGT-CATCC AGC GGCTGGACC GGCAAGATTCATGAA 39 52 COW1_RS06670 1427841 .. 1427856 - -4.6 -3.14132 CGCCGCCTTCATCAA CAGCCA CGAG CGGCCG CAGGACCCCCGGCAT 47 173 COW1_RS06655 1425249 .. 1425265 - -4.4 -2.71144 TATTGTTGTCAACGA CAACAG TGAAC CTGTCG GTATGATCACTCGCT 43 188 dsrA 1422807 .. 1422825 - -5.2 -3.53091 ACTCTGTTTCCGAAA GACATCAG GCA CTGCTGCC TTCCGCCTGTCTCTG 55 11 dsrB 1421643 .. 1421678 - -14.8 -3.09327 GCAGGTCAGGGAATA CTGTCAGGTCGGCG CCAAGTCT CGCCGACCTGACAT GTGCCTTAGAACCGG 83 31 cfa 1419984 .. 1420004 - -8.2 -4.8048 GCCGGATATGAAAAA GGCTCACC CCTGC GGTGGGCC TTTTCATGTCGGGAT 87 233 COW1_RS06630 1417749 .. 1417767 - -2.4 -2.72649 AGCCGATGATAGAAC GCAACA TTTCTGT CGTTGC TCGTGATCAGCGAAA 39 32 COW1_RS06625 1416872 .. 1416885 - -9.5 -3.35224 ACACGCCTTCAAACA GCCGG CAAT CCGGC AGCGTAGTGTATTCC 67 476 COW1_RS06620 NONE COW1_RS06615 1415620 .. 1415647 - -10.6 -4.36914 CGCTCGCTGAGAAAA CGGCAGACGCGGG AAC CCCGC-TCTACCA CTGGGGCGACACGGA 93 467 COW1_RS06585 NONE COW1_RS06580 NONE COW1_RS06575 1405512 .. 1405525 - -6.7 -3.73402 ATATCCGGCATGAAA CGGTT CGGA AACCG GACAACCTACCTACT 61 53 COW1_RS06565 NONE COW1_RS06560 1401358 .. 1401375 - -5.5 -2.79183 GTCATCTTTATTAGA GGCGACT AGGA AGCCACC CAATCTTATTCTTCG 47 253 COW1_RS06555 NONE COW1_RS06550 NONE COW1_RS06545 1391122 .. 1391134 - -3.3 -3.76224 GTTGCACCTAGCAAA GCTGT CCC ACTGC GGACGCCAAAAATCC 52 58 COW1_RS06540 NONE COW1_RS06535 NONE COW1_RS06530 NONE COW1_RS06525 1381014 .. 1381025 - -3 -2.9176 AAGCTGATTCACAGA TAAC TCCT GTTA ATGCGCAACGCCTAA 42 23 COW1_RS06520 NONE COW1_RS06515 NONE COW1_RS06510 NONE COW1_RS06505 1376592 .. 1376603 - -5.8 -3.35912 GAGGATATAGACCAA CTGC AACA GCAG TTCTCGGAGTTGATG 53 245 COW1_RS06495 1375305 .. 1375315 - -3.2 -3.74184 AATTGAAGTCAAGAA GACG GCT CATC GTTTACTTTGAGATA 52 8 COW1_RS06490 1374539 .. 1374549 - -2.4 -3.07994 CTCAATGCCAGGGAA GGCG CAA CCCC CGCTCCCGCGGGGGT 41 43 COW1_RS06485 1373427 .. 1373444 - -9.9 -5.03314 CCGACTGCGAAAAAA GTGTACC ACGT GGTACAC CCAGATCTTTTGTAC 100 325 COW1_RS06480 1370919 .. 1370932 - -2.3 -3.84961 CATGGAATGAGGAAA GGTCC AGGT GGAGC GCAGCGCAGGCGGTG 53 277 COW1_RS06475 1369747 .. 1369761 - -5.6 -3.39529 TCAAGTGAATATGAA TGTGCC TAA GGCGCA TAAAGTGCAGTCAAC 53 16 COW1_RS06470 1369020 .. 1369048 - -8.1 -2.84566 AATATTGGATAATCA GACCTCGGCGATT TCA AGTCGCCGATATC GGCTATTTATTTCTG 54 77 COW1_RS06465 NONE COW1_RS06460 NONE COW1_RS06455 1366570 .. 1366582 - -5.5 -4.09864 ATCGATGTCGCAAAA GCCAT AGC ACGGC GAAGTGGCGCAATCG 64 381 COW1_RS06385 NONE COW1_RS06380 1356102 .. 1356124 - -7.6 -3.02144 TGAGTTCGCCGAACA GGCACAGCGT TTC ACGCTGGGCG ATTACTGGGGCCTGA 53 213 COW1_RS06325 1347408 .. 1347418 - -8.2 -4.15565 CGGATGATCGCAAAA CCGG TCA CCGG GTCGTCAAGCTGGCG 72 348 COW1_RS06310 1343653 .. 1343677 - -2.8 -4.41047 ACCCGGGAACCAAAA CCCTGTTC TGCCCAAGG GAACTGGG CAGGATCCTCGATGA 66 502 COW1_RS06295 1342533 .. 1342549 - -5.7 -3.64703 CCCGCCTCAGGCAAA GGCGGCG CCA CACTGCC CCTGCACCACCTGGT 58 0 COW1_RS06285 NONE COW1_RS06280 1338958 .. 1338968 - -4.6 -2.99837 GGTGAAAGAGGAAAG CGGC ATC ACCG ATCTGCAGTTCGACT 45 321 COW1_RS06260 1335446 .. 1335460 - -2.7 -3.89346 CGCGGAGGTGACAAA GGCGC TTGCT GCGGC CGCGGCCGAGGGCGA 56 399 COW1_RS06250 1334123 .. 1334141 - -6.6 -3.1272 GGAGAAAACCATATA CGCCCTGC CCG GAAAGGCG GGGGACGACACGGTT 52 84 COW1_RS06245 1333820 .. 1333839 - -16.4 -5.00138 GATTCAAACCAAAAA CGCCGCCC CGAG GGGCGGCG CCGGTTGCGGCCGAT 100 48 COW1_RS06240 NONE tcdA 1332690 .. 1332720 - -8.9 -2.62184 GTGTCCGCCAGATGA CCGCCACCGGC TCAGTCGTC GCCGGCGGCCG ACACGCTGCCGGCGC 57 6 COW1_RS06230 1331920 .. 1331952 - -14.1 -3.04398 GCGGCGCGGCAAAAT GATGGGTTACGGCGC GAT GCGCCTCCACCCATC CTACGCCAGCCGCCG 83 26 msrA NONE COW1_RS06205 NONE COW1_RS06200 1326634 .. 1326672 - -9.6 -3.04144 TCTGGACGCGGAACA CGCCGGCGCGCTGCACGA CCTGC TCGGGCAG-G-GCCGGCA GGTACCGCTGTGCCG 57 333 COW1_RS06185 NONE COW1_RS06180 1322556 .. 1322566 - -8.2 -2.53382 ATTAGGTTGAACGGA GGCC GCA GGCC GTAGGATGGGTGGAG 53 121 COW1_RS06175 1322088 .. 1322122 - -2.6 -3.38046 CCTTGAGTGGAAACA TGCGGGGACGCGGC TCAGTCG GCCTCGAAGCCGCA GGCCTTGTGGCTGGC 46 5 COW1_RS06170 NONE COW1_RS06165 1320145 .. 1320163 - -4.4 -2.72661 GACGACCGGCAAGCA GCCAGGCC CTG GGGCTGGA CCAGATTCCCGAGGC 43 268 COW1_RS06155 NONE COW1_RS06150 NONE COW1_RS06145 1316989 .. 1317025 - -5.2 -6.10489 AATTCCAAAAAAAAA GCGTAGGTCGGGTTA-GC GCA GCGTAACCCGACATG-GC CCGGCGCCGGATTAC 100 137 COW1_RS06140 NONE COW1_RS06135 NONE COW1_RS06130 NONE COW1_RS06125 1313602 .. 1313614 - -2.6 -3.70104 AATGATGCAAGACAA GCCC CGGCT GGAC TGCCCGTCCGGTGAA 51 157 COW1_RS06120 1312471 .. 1312495 - -4.1 -3.47227 GGTCAAGCAGGAGAA GGGTACGGAGG CGC CATCAGAACCC TCCCGACGCCCATTG 49 17 relA NONE COW1_RS06110 NONE COW1_RS06105 NONE COW1_RS06100 1307329 .. 1307349 - -6.7 -2.71144 GACGGCGGGGAATCA GCCCGGCTG GAG CAGCCGCTC GATCTTCTGCGTCAG 49 2 COW1_RS06065 NONE COW1_RS06060 1300630 .. 1300649 - -7.8 -3.14931 GCCATGTCTTAGCAA TGCCTGTG CCAG CACAGGCG GAAGGCTTGTTTTTA 57 264 flgB 1300183 .. 1300204 - -3.7 -3.06315 CGAAGACCTTGAACA GAGACATGA TCAT TCACCTCTC AGCGTGGACTTGATG 45 13 flgC NONE COW1_RS06045 NONE flgE NONE flgF NONE flgG 1296124 .. 1296148 - -3.4 -2.72991 GGATATCCGGAACGA CGTCATTGCG AGGCG CGCAGCGCCG CGGCAATCTCCGACT 41 114 flgH NONE COW1_RS06020 NONE flgJ NONE flgK NONE flgL 1289867 .. 1289889 - -2.7 -4.57073 TATCCCGGCGAAAAA CGTAACC CAACCTGCC GGCTACG TCATTGCGAGTACCC 66 189 COW1_RS06000 1286985 .. 1287039 - -8.5 -2.53876 GCGCAGCGCAACCCA TCGGGCCG-AGCGATGGGTTGCGGCGC GCA GCGCCTCCACCCATC-CTACGGGACCA CTTCAAATATCTGTG 57 72 COW1_RS05995 1284938 .. 1284960 - -18.4 -2.92613 CCGGAGTTGAAACCA CACCCGGGGC AAC GCCCCGGGCG GGTTCACTCACCTCC 100 41 COW1_RS05990 1284472 .. 1284489 - -8.4 -4.258 GCAGTTAGCAATAAA CAGGCC AGCTCA GGCCTG CTCCCGGAACAGCAG 81 17 fliD NONE fliS 1281594 .. 1281608 - -6.4 -2.65354 GTCAGGTGAAACCCA TGGTCA TAT CGACCA GCGTCAGGATGACCG 48 131 COW1_RS05975 1281025 .. 1281036 - -4.4 -4.26189 GGAGAAATGTCAAAA TTCC GACG GGAA AGATCAAGAGCGTCA 67 222 COW1_RS05965 1279245 .. 1279275 - -5.3 -2.91383 ACGGGGATCCAGATA CCGCGCGGTTGCTGG ATT CCCGC--CTGCGCGG GAATGACGAAAGACT 48 175 COW1_RS05960 NONE COW1_RS05955 1276442 .. 1276461 - -9.2 -4.02253 GGAATAATGCAGAAA CCGGGCCA GCTT CAGCCCGG GATGGCGATGCCGGC 78 17 fliE 1275962 .. 1275974 - -4.7 -2.74322 GGCAATCTCGCAAAT CAGGC TGT GCCGG TTGGAGATTGCCGCG 44 77 fliF NONE fliG 1273191 .. 1273242 - -5 -3.66424 TAAAAGTACCCGAAA CGTTCTGTAGGATGGGTGAAGGCGC AAC GCGCCGTAACCCATCAT-CATGCCG CCCGGCGATGGGTTG 56 74 COW1_RS05935 NONE fliI 1271123 .. 1271137 - -4.2 -3.35679 GTGTGCCAGGCATAA CACGCA GGG TGGGTG AAGCGGTAGCGTAAC 49 57 fliJ 1270432 .. 1270482 - -5.5 -3.16608 ACGGAAAGCACGGAA GTTTGGTTTGTCATCGCCATGACGC TAC GCGCC-CGGCGATGA-AATCGAAGC TTTTGGGTTAAAACC 49 80 COW1_RS05920 NONE COW1_RS05915 NONE COW1_RS05910 1266078 .. 1266097 - -2.2 -3.9461 CGGCGCCAATAATAA GATCGATTG GCG CAAT-GACC CATACTTAAACCTCA 56 31 COW1_RS05905 1265531 .. 1265545 - -3.6 -3.18383 ATCTCCAGCTAGCAA TATAGT CTG ACTACA CGAAAGTCTAGTGCC 47 4 COW1_RS05900 1264760 .. 1264780 - -11.8 -4.08767 CTTAGTGCCGGAAAA CGACCGCC TCGAC GGCGGCCG TCTCCGGCTAGGGTC 86 43 COW1_RS05895 1262703 .. 1262715 - -2.7 -4.3129 CATGTATCACCAAAA GATAT ATA ACATC CCCCATAAGCTACGC 62 85 COW1_RS05890 1261584 .. 1261616 - -6.2 -3.01637 GACCAAGAGCAGACA TTGTCGGTAAAGCC CAGCC GGCTAAACCGACGA GTTGTTTATGTCAGG 51 53 COW1_RS05885 1260771 .. 1260794 - -3.8 -2.87003 CTAGGAAGAATACTA GGCATATTCT TGAA AGCATTTGCC CCCCCCCTGGGTCAT 44 218 COW1_RS05880 1260136 .. 1260150 - -4.3 -4.41895 AATCTGGAAGGAAAA GTTCA TCGCC TGAAC TTGACCTGACAGCCA 68 116 ltrA 1257071 .. 1257097 - -2.3 -3.05463 ACCCTCCTCATCGAA CCGGACATGCAGA TTT CCCGCAT--CCGG CTCTCGGACAAGACC 41 41 COW1_RS05865 1255412 .. 1255438 - -2 -3.34715 CACGGGGCGGAAAGA CTGTTACCGGGC AGC GCCGGGGGACTG GGACGGGCGATTGCG 46 2 COW1_RS05860 1254710 .. 1254737 - -14.8 -3.16267 TGCAAGTATATCCAA CCGGTGGGCGGA TCAA TCCACCCGCCGG CCGAACCAGAGGACG 83 10 COW1_RS05855 1253864 .. 1253882 - -5.3 -2.81683 ACAGGCAAAAGCAAG TCCTGTGC CACG GC-CAGGA AGAAAAATTAGTTAT 47 255 COW1_RS05850 NONE fliM NONE fliN NONE fliO NONE fliP NONE fliQ NONE fliR NONE flhB 1248266 .. 1248277 - -2.2 -3.48593 CAGTCGTTGACAGAA GGCT ATGC AACC TTCTTACCAATTTGT 47 151 flhA NONE flhF 1244783 .. 1244795 - -4.7 -2.89881 GATCCATTCTAGACA CGGCC GCT GGCTG CGATAGCGCCGAAAC 46 6 COW1_RS05800 NONE COW1_RS05795 1243167 .. 1243182 - -6.8 -2.73364 TGGGCATCGCAATGA CGGGCGC GCT GCGCC-G TCAACTCTGAACCCA 51 26 cheY NONE COW1_RS05785 1241762 .. 1241772 - -3.2 -3.04398 CTGGCGGCTCAAAAG CCCA GGC TGGA GAGCAGTTCATCCAC 43 8 COW1_RS05780 1239527 .. 1239556 - -3.5 -4.15044 CGGCGGCGGAAGAAA CCCGAGTCGTCC ACCACCA GGACG-CGCAGG CGGGAAGCGGTATTT 60 78 COW1_RS05775 1238439 .. 1238497 - -8.1 -2.52896 GCAGGCCGGAATCCA TCAACCACTGCGGTATCTGGATCCCGGC CTGC GCCGGGATGACGATGGCGCAA-GGTCGA CCCTTGCCTTATACA 53 34 COW1_RS05770 NONE COW1_RS05765 1236696 .. 1236725 - -12.1 -2.70932 CCTGCGCGGGAATGA CGGCAAGGGTGCC CCGG AGCACCCCTGGCG TTCATTTTTTTCCGA 70 76 COW1_RS05760 1235836 .. 1235855 - -10.8 -3.90291 AGCTCTGGAAGGAAA GAGGTAGT CAAC ACTACCTC TTGACTGAAGAGCAA 77 196 COW1_RS05755 NONE COW1_RS05750 1235034 .. 1235072 - -11.9 -3.05384 GGTCGGGTTAGCGAA GCGTAACCCGACA GTGCTGCAGATGA TGTCGGGTTACGC CCTATCAGGCTAACC 73 122 COW1_RS05730 1232211 .. 1232226 - -11.8 -3.16564 TCTTTATCTTAGCAA GCCGCC CAGC GGCGGC TCAAACCAGCAGCAG 73 26 COW1_RS05725 1231443 .. 1231464 - -5.1 -3.65046 CGGGCATGCGAAGAA TACTGGACC GATC AGTCCCGTA TGTCAATCGCGGGTA 56 28 COW1_RS05720 1230811 .. 1230830 - -7.2 -3.14132 CCGGCCCCTGAGTAA TATGGACC GTTC AGTCCATA TTTGGCGAAAATTTT 54 42 COW1_RS05715 1229712 .. 1229724 - -6.2 -3.41053 GGAAATCAGCCACAA CGCC TACGC GGCG GCGTTCCGGGATCCG 55 363 amrS 1227016 .. 1227032 - -2.2 -3.64703 CGGTGCGCATGGAAA GCCG GGTCAGGTA CGGC AAGGTCATCAGCGAA 51 458 glgC NONE COW1_RS05675 NONE malQ 1218981 .. 1219019 - -7.5 -3.05596 GATGGGTGCAGCGAA GCGCAACCCATC-GCA TCAGGATC CGCTGATGGGTTGCGG CGCAGGGCGCCTTCA 54 159 queA 1214806 .. 1214818 - -4.1 -3.14848 TCGGCTCATGAAAAT CTTCG CCA CAAAG GACACAGGGGCACGA 45 181 tgt 1213624 .. 1213656 - -6.1 -3.14132 TGTTGCGGTTATGAA TCGGCTGCGCCCCCC CAA AGGGGACAAAACCGC GCGCATTATGCCATA 52 31 yajC NONE secD NONE secF NONE prmB 1204354 .. 1204364 - -3.2 -2.73483 ATTTCATGCCAACCA CAAG CCG CCTG TTGGAATGGTTTTAC 41 99 hemN 1202437 .. 1202447 - -3.2 -4.64495 ATGCAACAAAAACAA GATG ACC CACC GATTCGAGGGAGGCA 69 408 aroC 1201075 .. 1201085 - -8.2 -3.1552 GGGGATCCATCAACA CGCC CGC GGCG GTCTCACTCGCTCCG 57 29 COW1_RS05575 1200659 .. 1200675 - -11.5 -2.9621 ATTATACCCAAATCA CCCCCCG TCG CAGGGGG CCGGAAATCAGGCCT 68 33 COW1_RS05570 1199295 .. 1199307 - -10.5 -3.67597 CTTGCGAGCGAAGAA CGCCC GTA GGGCG GCCCCGAAGGGGTGA 75 152 leuC 1192192 .. 1192233 - -15.1 -3.47387 GGAAAACACGGACAA TTGCCTGCCGGCGCACGCGC TAC GCGCG-GCGCCGGAGAACAA AACATTTTCCGTGTT 87 101 leuD 1191420 .. 1191465 - -5.9 -3.01684 AAGCACGGACAGAGA TTTTGTTCTCCGGCGC-CGCGC ATA GCGCGCGCGCCGGCAGGCAATT GTCCGTGTTTTCCGT 48 57 leuB 1190193 .. 1190242 - -9.4 -4.72386 GAAAGCACGGAAAAA TGTTTTTGTTCTCCGGCGC-CGCGC GCA GCGCGTGCGCCGGCAAACAAT--CA TCCGTGTTTTCCGTG 93 64 COW1_RS05530 NONE COW1_RS05525 1186436 .. 1186461 - -19.1 -4.17762 GAGGCTGGAAAAGAA CAAAGCCCGGC GGGT GCCGGGCTTTG CTATCTACAGTGACC 100 52 COW1_RS05520 1186046 .. 1186061 - -11.8 -4.72272 TCCCGGCATGAAAAA CCCGGC CGGG GCCGGG TTTGGAAATCGGCAA 100 51 COW1_RS05505 1183973 .. 1183992 - -7.8 -2.9652 GAAAATGCAACCAGA GGCTTGAG GGCG CTCATGCC ATTCATTCCACTCCG 56 28 truA 1182925 .. 1182949 - -3.5 -3.53012 CTCGCTGGGGTGAAA CCCGCAATCCT GTC ACAACTGCAGG GGAATTGCAGCTTTT 49 158 COW1_RS05495 NONE trpB NONE COW1_RS05485 1180237 .. 1180248 - -7.2 -2.78384 CCCGGCTTCACGAGA CGGC AGCA GCCG GCTGCGTAGCGTCCA 51 6 COW1_RS05480 1179200 .. 1179217 - -2.5 -3.04322 GGCAATCTCGTAACA CCGCCTC ATCC GTTGCGG GATTGCCACGTCGCT 41 102 folC NONE COW1_RS05470 1177154 .. 1177167 - -5.2 -3.40597 CGCCTCAGGCAAATA CCGG ATTGTG CCGG GCGGCGGGGCCGCCG 53 82 COW1_RS05465 NONE purF 1175008 .. 1175053 - -7.6 -2.61216 CGAGGAACGAAGTGA CGTGGCAATCTCCAACCG GTTGATTCTG CTGTACGAGATTGCCACG CTTCGCTCGCAATGA 53 78 COW1_RS05455 1173582 .. 1173620 - -5.3 -3.17392 GATGGGTGAAGCGAA GCGCAACCCATCACAAT CCGTC ATGACGATGGGTTACGA CGCTGCGCGCCTCCA 51 47 COW1_RS05445 1171676 .. 1171690 - -5.7 -2.94099 GGCGGTGATCAGACA GGCAT CGGGC ATGCC GGCATTATATCAACA 48 115 COW1_RS05440 NONE COW1_RS05435 1169745 .. 1169770 - -4.5 -3.53012 CTCTCCCCCTTCAAA CGCTCCGGGGA GTGG TCGCCGGCCCG CTTCGCCCAGGCCAT 52 432 COW1_RS05415 NONE COW1_RS05410 1164808 .. 1164830 - -4.6 -3.60151 GGGTCTAAATCAGAA CGGGGGCGGG GAG CGCGCAACCG GACACTGTCGTGGCA 53 54 COW1_RS05405 1163957 .. 1163972 - -3.2 -3.28924 GATGCGGGGTGACAA GACCTC CGGC GAAGCC GCCTCCTGCCGGACC 45 323 COW1_RS05400 1161714 .. 1161724 - -6.8 -2.53876 GCGCAGCGTAACCCA TCGG TAC CCGA CGTGAAGATGAGCGC 50 50 COW1_RS05390 NONE COW1_RS05385 NONE COW1_RS05380 1160130 .. 1160140 - -5.4 -3.5774 AGCTAACGGCCCAAA TTCC GCT GGAA TTATACCGGCGCGCA 55 106 COW1_RS05375 1160001 .. 1160013 - -7.7 -3.28714 ATATTGATGAGAATA CGGAA AAT TTCCG TGCGGGACGACACGC 59 63 COW1_RS05370 1159722 .. 1159753 - -18 -2.52635 ACCTCTATTATCAAC CTGCCTCCCGGGCCG TAC CGGACCGGG-GGCAG TGTCTCTCAGATCCC 87 88 COW1_RS05365 NONE clpP 1157705 .. 1157715 - -3.2 -3.40403 TGCCCGGTATGACAA GCAA TCC CTGC GCCAGTTCAGGGTTT 47 51 clpX 1156311 .. 1156336 - -19.7 -2.71011 ACTGCGGGTGAATGA CGCGGCGCCGG AAGC CCGGCACCGCG CAAGGGTCAGGCGGT 100 42 lon 1153564 .. 1153594 - -17.7 -3.65542 TGCAGGCGCAAAAGA GAAGCGCGTCGTC AAAAA GACAACGCGCTTC GTTTTACATTGACTT 100 52 COW1_RS05345 1152800 .. 1152810 - -2.4 -3.65425 TGCACACACTTGAAA GGGG ATC CCCT TCCGGCGCGCGTGCG 51 100 COW1_RS05340 NONE COW1_RS05335 1152419 .. 1152438 - -15 -5.38054 CTGTACAAACAAAAA GGGCGCCT CGCA AGGCGCCC TTCGATGTAGTGGCG 100 36 COW1_RS05330 NONE COW1_RS05325 1148412 .. 1148426 - -7 -3.41051 GTATGGCGAGCAGAA CGCCCC GCT GCGGCG CAATGTCAGCATCGA 56 389 COW1_RS05315 NONE COW1_RS05310 NONE COW1_RS05305 1142872 .. 1142882 - -8.2 -4.37886 GCAGGCCGGACAAAA GCGC GGA GCGC GTTGAACGCCCGCAG 77 206 COW1_RS05300 1140734 .. 1140750 - -2.1 -2.89564 TCCGTAGTGTATATA CCACCGG CGC CGGGTTG CGACTATTCCAGCAG 40 29 COW1_RS05295 1139079 .. 1139104 - -8.2 -3.69734 AATAATTGACTCAAA GGCTCGGGAT TCTAGC ACCCCGGGCC GGGGGAATACACACA 66 47 COW1_RS05290 1137796 .. 1137834 - -6.5 -2.6927 ATGGCTCACAGATCA CG-CGGCCGCGGATCCCG CCGT CGGCAGCCGGCGCCGGCG CCTGTAGGCCAGTGC 48 52 COW1_RS05285 NONE COW1_RS05280 1136037 .. 1136056 - -13.6 -3.28712 CGTGGTGGCGCAGAA GCTCGAGC ACCT GCTCGAGC GGCTGGAGAAGTAAG 82 43 COW1_RS05270 NONE COW1_RS05265 1134037 .. 1134050 - -8.1 -3.28712 CGCCGCCGGCGACAA TGCCC CCTG GGGCA CGGCGGCCGATAACC 56 428 COW1_RS05245 NONE arfB 1132138 .. 1132161 - -3 -2.70932 GCCGTGCGGGAATCA CGACGCCGGGA CTG TCCCGGAGA-G TGCCATGACGCCATG 41 126 egtB NONE egtD NONE recQ 1127938 .. 1127950 - -4.1 -3.1485 GAATGAATGATTGAA TGACC GGT GATCA TATTTTCTTATGACG 45 33 COW1_RS05220 1126933 .. 1126945 - -5.5 -4.62069 CGGCGAGCGCAAAAA CGCCA TCA TGGCA CCCATGGCCGCCGGC 77 414 COW1_RS05200 NONE COW1_RS05195 1123783 .. 1123806 - -8.8 -3.14132 GTGGCGCTGGAGGAA GTGC-GCCGCG CTG CGCGGCTGTAC ACGGCCATGATCTAC 56 124 COW1_RS05175 1119857 .. 1119868 - -4.4 -3.06696 CGCTTGTTCAACATA TCGA CTCC TCGA CATCGTTTCCTTCCG 47 106 COW1_RS05170 NONE COW1_RS05165 1117256 .. 1117280 - -4.1 -3.01712 GGCGGTGTTCGAACA GTTCCGGGCAC TGC GCACCCTGGAC ACCAACATCTATCTG 44 184 uvrA NONE COW1_RS05140 1109330 .. 1109359 - -2.7 -3.06515 CGCGACGGGTAAAAC GCAATCCCGATGA TCCG CCACCAGGCCCGC AGCTCGATAGCGACC 41 107 COW1_RS05135 1108565 .. 1108586 - -3.6 -4.25848 AAGCCGTCATGAAAA CCGCAGGC CCATGT GCCTGCAC GATTGCCGCAGCCTG 65 61 katG 1105336 .. 1105346 - -2.4 -3.60661 GATTCAAGTATAGAA GCGG ATT CCGA GGCTTCTACATTCAG 47 91 COW1_RS05120 1103861 .. 1103871 - -8.2 -2.53995 ATTCATGTCAACTCA GCGG TAT CCGC GCCTGCGGCATGGTC 53 39 COW1_RS05115 NONE COW1_RS05110 1102217 .. 1102239 - -6.2 -3.91144 CTGACACGGGACAAA CGGCGATTTC AGG GATATCTCCG TCACCGCCGAAGGCT 64 62 COW1_RS05105 1099878 .. 1099895 - -5.5 -3.63627 CCGGCAGACGCCAAA GGCCTGAG CGT CCC-GGCC ATGCCGGTGGGCAGC 57 242 COW1_RS05085 NONE COW1_RS05080 NONE arsS NONE COW1_RS05070 1094472 .. 1094501 - -7.7 -2.95774 CAGAGGCATCAGACA CCTGGATGCCGGC CTTC GCCGGCATGACGG ATTGATCAGAGCTTC 56 75 COW1_RS05065 1093655 .. 1093677 - -6.2 -2.70932 CCGTCTGCGCAATGA TGGGTTACGC CTT GCTTCACCCA TCCTACGTTACTCCG 49 41 COW1_RS05060 1092718 .. 1092749 - -5.2 -2.57132 TCCGCTGTCGATAAC TC-CATGCCGATC AGATGGG GATCGGCCTGTGA TTTTCAAGATCCCTT 46 29 trxC 1092199 .. 1092240 - -5.8 -3.90112 CGTTTCGGAATGAAA CCCGGCGATCGGACCGGTCC GGCG GGACAGAACCGACCG--GGG CAGCGATCAGCTTTC 61 39 COW1_RS05050 1088682 .. 1088714 - -5.6 -3.53444 GTATTTGCTTTCAAA CGCCTGC-TCCCA GGAACGGT CGGGACACAGGCG CATATTACAGAATTA 55 76 COW1_RS05045 1086964 .. 1086982 - -10.2 -3.53091 ACGTGCGGTGGGAAA GGAGGCCG ACA CGGCCTGC TTCCAGTGCCACACC 67 137 COW1_RS05035 1085781 .. 1085804 - -4.4 -4.08485 CTGACTTAAACCAAA CAGCCTCCGCG AAA CCCGG-GGCGG TTCATCACTCCTGTA 62 74 COW1_RS05000 1078485 .. 1078506 - -17.3 -5.27335 TCCGGCAAACAAAAA GGCGCCACC TCAG GGTGGCGCC TTTTTCATGGTCGAT 100 68 COW1_RS04990 1073410 .. 1073434 - -4.2 -3.95219 CCCAAAGGGCATAAA CGCAGCGTGG CAATC CCACACCACA GTATCAGCCGGCAGG 60 190 COW1_RS04980 1071040 .. 1071067 - -4.1 -4.53419 CAGGAGAAGAACAAA CATCCCGGCAGA ACCGA TCCGACGGG-TG TGTGAATACATTTTC 68 175 COW1_RS04975 1070298 .. 1070314 - -9.4 -3.33492 CCATGCAGTGGACAA GGCGGA TGGAC TCCGCC CTCCTGCCCCGGGCG 67 91 COW1_RS04970 1067608 .. 1067648 - -24.7 -3.76125 TTACTCGAATTGAAA CCGGTCAGTCCGGCCACCG GAG CGGCGGCCGGGATGACCGG CCGCGTTTCACCGGG 100 33 sbcB 1065582 .. 1065601 - -6.4 -4.62336 ATGTGATCCGAAAAA CGCTGCAGC GAC GCTGC-GCA CGTGCCGTGGAACCA 78 315 COW1_RS04960 NONE aprB NONE COW1_RS04950 1062107 .. 1062141 - -17.3 -4.07568 GGTCCGGCCGGAAAA CCGAGGGATCTCTAC CGTTC GTAGAGATCCCTCGC ATTACATCCCTGTCG 100 50 COW1_RS04945 1061635 .. 1061646 - -2.2 -3.3676 GGTAACATTCTAGAA GATG GAGG CACC GAAAATTCTGACTTC 46 8 COW1_RS04940 1060976 .. 1061015 - -18.5 -3.53761 GAAGCGCCCCTGAAA CGAAGCGCCGCGCGCCC CCTTAC GGGCGCGCGGCCACTCG TTCTTTCACTTCCTC 100 87 COW1_RS04920 NONE COW1_RS04915 NONE COW1_RS04910 1056972 .. 1057000 - -8.8 -3.25192 CTCAAGGGTATAACA CCGTCATCCCGGC GCAG GCCGGGACC-CGG AAACCGCCGCGGCCC 63 216 fur 1055824 .. 1055834 - -2.4 -5.011 AGGGAAAGAAGAAAA CGGC GCA GCGG AAATAACAATCCTCG 74 140 hrcA 1051802 .. 1051819 - -3.3 -4.1196 AAGGGAGGGGCAAAA TGCCTCGC TGC GCG-GGCT TTGCGTCCTATTTGG 60 44 grpE NONE dnaK 1048952 .. 1048998 - -13 -4.50993 GGAAACAAACACAAA CGGGACCGGTGAGCCGACAC AACCAAG GTCTCGACTCTCCAGTCCCA TTACCCCTTAACCCG 100 45 dnaJ 1047547 .. 1047567 - -6.8 -2.61274 GTCAGGCGAAGCAAT CTCGCGACG CTAC CGCCGCG-G TTGATTTCAGAGATT 50 67 dapB 1046362 .. 1046387 - -11.9 -3.70902 GCGTGGATATGGAAA GCGGGAGCACTC CCC GAGC-CTCCCGC TGGCAATCATTTCGT 81 275 carA 1045099 .. 1045114 - -2.6 -2.52896 GCAGGCGGGAATCCA TATACCG CCG CGGT-TA CTGGATCCCCGCCTG 38 96 carB NONE greA NONE COW1_RS04845 1040594 .. 1040626 - -9.1 -3.64703 GGGGGCTGACCGAAA GCGTGATCGAGGA GATCGAT TCCTCGGTCGCGC ACCACGAGCTGATGA 68 200 rlmE 1039675 .. 1039692 - -4.7 -4.07568 TGGGCCCGCGCAAAA CCCCGGC AGCC ACCCGGG TTAATCGGGCCATAA 62 60 ftsH 1037662 .. 1037681 - -16.4 -4.21922 GCAGTTAAAATGAAA CGCCCCGC CAAA GCGGGGCG TGATGCGGGTGGCAG 100 46 folP NONE glmM 1035199 .. 1035217 - -3 -2.53918 TTACCTGACAAAACG GGGCGCTA GCT TAGCGACA GACCGGGAGAAAATC 39 110 COW1_RS04815 NONE secG NONE COW1_RS04805 1033816 .. 1033841 - -12.5 -2.52543 ACGGCCCGCAACGCA GCAGGCCCCGC ATAA ACGGGGCCTGT CACGATTCATCAACA 71 50 COW1_RS04800 NONE COW1_RS04795 NONE COW1_RS04790 NONE COW1_RS04785 NONE COW1_RS04780 NONE nuoE NONE nuoF NONE COW1_RS04765 NONE nuoH 1024922 .. 1024937 - -3.2 -3.28416 CACCATTCATATCAA TCGAAC CAGG GCCCGA CGCCGGCGACGATCG 45 6 nuoI NONE COW1_RS04750 1023697 .. 1023707 - -2.4 -3.34398 CCCCCGCCTCAAACA GGGC CAG GTCC ATCCGTACACGCCGC 46 60 nuoK NONE nuoL NONE COW1_RS04735 NONE nuoN 1018145 .. 1018158 - -4.5 -3.60805 AGATTGTACCGGAAA CCGGCG GCC CGC-GG CAGACCCTGTCAGCC 53 35 COW1_RS04725 1017735 .. 1017750 - -3.2 -2.7386 AACGCATTCTAATGA CAAGGC CGAT GCTTTG CAAGCCCGCCGCAGA 41 41 COW1_RS04720 1017582 .. 1017594 - -6.2 -3.11316 CGAGGACTGAACAGA CGGC TGCCG GCCG CAGCTGTGCGGCGGA 52 66 COW1_RS04705 1013583 .. 1013602 - -10.6 -3.28712 CGGCGTGGGCGAGAA CGCCGCGC CGGT GCGCGCCG GCATCCTGGATGGAC 66 437 COW1_RS04685 1008301 .. 1008320 - -12.1 -5.27335 CTCGGGAAACAAAAA CCCCCGC ATCAGG GCGGGGG TTTTGAGACAGCCGG 100 50 COW1_RS04680 NONE COW1_RS04675 1002559 .. 1002573 - -7.8 -2.64218 ATTCTGGACGACAAT GGCTGA TAT CCAGCC GGGGGGCAGCGGTCA 53 220 COW1_RS04635 NONE COW1_RS04630 NONE COW1_RS04625 993853 .. 993871 - -5.8 -3.01712 CGCTGGCGGTCAATA TCGCCGTC CAG GTCGGCGC CGATCCGGCCATCTA 47 343 COW1_RS04610 NONE COW1_RS04605 986876 .. 986897 - -17.3 -5.24129 TCCCGTGATAAAAAA CGGCCCGTC ATTC GACGGGCCG TTTTTTTGTGGAGCG 100 140 rimP 985184 .. 985206 - -4.8 -5.0538 CCCGAGTCGAAAAAA TTACCCCTGA AAT TCAGGGACCA ATCGTGCCTGCTCGA 83 3 nusA 983612 .. 983624 - -10.5 -2.99649 AGAGGGGGACAGAGA GCGCG CTG CGCGC GGTTCTATTGCCTGG 64 41 infB 980963 .. 980981 - -8 -3.32343 GGCATAGGCGTACAA CGGGCACC GGC GGCGGCCG CGGACGGATCAGACC 59 34 rbfA NONE truB 979422 .. 979471 - -6.6 -3.08133 TACGGATGTATCGAA GCCGCGTATTGTAACTT-C-CCCCC AGA GGGGCCACAAGTTCCAAT-CGCGGC AGAAACTTAGCCCAC 52 54 rpsO NONE pnp 976819 .. 976836 - -10.5 -5.03994 GTTCACACAGAAAAA GGGGACC TGAA GGCCCCC TTTCCTGAGACAGCG 100 156 COW1_RS04560 976119 .. 976140 - -14.5 -4.27316 GCGGGGAACCGAAAA TGCGGCTGA TCGC TCAGCCGCA TTTATTATTGCTGCG 100 49 COW1_RS04540 970784 .. 970816 - -14.2 -2.93447 GGAATCCTGACAAAG CCGGCG-CCGGATCA GATC TGATCCGGGCGTCGG ACCGGCAGCCCACCG 82 42 COW1_RS04525 NONE COW1_RS04520 966438 .. 966455 - -4.1 -3.59262 GGCGAGAGTTGGAAA CAGTTGC TGAA GGAACTG CCGGCCACCCTGCTG 51 471 smc NONE zipA NONE ligA 957811 .. 957834 - -3.1 -3.16564 TCCGCACGGCACGAA CCGC-CGC TGCCCCTTC GCGTGCGG AGATGCGCAGGCGCG 43 47 COW1_RS04485 955258 .. 955272 - -3.5 -3.14132 TTTCTCTTCCATTAA CGGCT CCGTC AGCCA GATTTCATCGATTGG 43 30 COW1_RS04480 954900 .. 954919 - -7.8 -3.05521 AGCATAGCGCGAACA TGCCTGCG CACG CGCATGCA TTTCAGAGTTCGTCC 57 28 COW1_RS04475 953923 .. 953962 - -15 -3.30039 CATGTACAAGTAAGA CGAACCGCCGCCCTGC CGACCTGC GCAGGGCGGCGCCTCA TTCCGGGAGCGAGAC 87 23 COW1_RS04455 NONE COW1_RS04450 948235 .. 948275 - -7.3 -2.62184 TGTCCGGTCAGAGCA CGCCACTGCGCCTCGCGGG CGC CCCGGATGGTGAAGTGGCT GTGCCGGAAAAGATT 50 94 COW1_RS04445 NONE COW1_RS04440 947143 .. 947167 - -4.2 -3.32803 ATCACATTAAATAGA GCCCCGTCAT GAGCA ACGACCGAGC GTTCGTACGATTTTT 49 134 COW1_RS04435 NONE COW1_RS04430 NONE COW1_RS04425 942191 .. 942220 - -4.7 -3.78934 GCTGCGCGACAACAA GCTGGCCGCGCTG AATG CCGGGCGGCCCGA GCTCATCGCCACCGC 58 261 COW1_RS04415 940151 .. 940193 - -6.9 -3.29511 CGGACTGCGGCACAA GCTG-CCGCCGGCACAGGCCG TGC CCGCCTG-GCCGACCGTCACC CATTCGCGCCGCATG 56 292 COW1_RS04395 936204 .. 936260 - -9.3 -2.6927 ATGTTTTACAGACTA TTCGACCCTTTC-CAGCAGCGGCCGG ATCCAG CCGGCCGTCGCTGCGGACGGGACTAA TGCCTATAACGGCCG 60 112 COW1_RS04390 NONE COW1_RS04385 NONE mrcB NONE COW1_RS04375 929870 .. 929883 - -5.3 -3.47573 CGAGGGAGAGCAGAA GAATG TGGG CATTC TACAACGTTGACAGC 53 44 COW1_RS04370 929039 .. 929078 - -10.3 -3.67597 CTGGTGAGTCAACAA GTA-G-GTCGGATTA-GCCC GCA GGGCGTAATCCGACTCGTAC CGGGCTGTGTCGGGT 75 130 COW1_RS04365 NONE tsaB 926350 .. 926367 - -4.1 -2.51951 TGAATCATTAAAATC TCAACGC AAAG GCGTTTA TTACTTCGATTCCAG 41 26 COW1_RS04355 NONE COW1_RS04350 925347 .. 925389 - -9.8 -3.01712 CGCCCTGCTGGAACA GGCCGGCTACGACGAGGCC TTCGTC GACCGCGTCA-AGCAGGCC GTGGGCAAGAAGGCG 60 290 COW1_RS04330 NONE COW1_RS04325 920572 .. 920587 - -6.2 -2.73441 CATGACGCTGCAAAG CTTGAT TTGA ATCAAG ATTGGGTCGGTATTG 49 86 COW1_RS04320 919116 .. 919147 - -11 -4.39287 CCAATGACAGCAAAA GTCACGTTCGGA TACAATCC TCCGAACATGAC ATGTTATGACACTCA 90 75 COW1_RS04315 917576 .. 917592 - -11.5 -3.37612 GGCAAGGCCAAGTAA CCCCGGC GTT GCCGGAG TTCCTCACGGAGCGG 73 147 bioA 913887 .. 913905 - -2.4 -3.03124 TCTCATGCGGCAATA GCAACC GATTGGA GATTGC CACGTCACTTCGTTC 41 133 COW1_RS04280 910422 .. 910437 - -5.4 -3.72893 CATGCGCGGATTAAA CCACAC TTCC GTGTGA TTGCGAATCGCGCGG 58 88 COW1_RS04275 NONE lolD 908132 .. 908150 - -2.2 -2.52635 ATCTTCACCACCAAT CCGCTGAC CAT GCCGCCGG TATTCTATTCCACCT 37 349 COW1_RS04260 905326 .. 905343 - -4.1 -3.53761 CAAGGTTTCCGTAAA CCCGT CGTATGAT ACGGG TTCGGGCCTGCTCAT 51 152 COW1_RS04255 NONE COW1_RS04250 NONE msbA NONE COW1_RS04240 NONE COW1_RS04235 NONE kdsB 900261 .. 900288 - -5.4 -2.87132 CTCCTGTCGGAGATA CTGGATCCCCGC CTGC GCGGGGATGACG GCGTTTTTGGTGTTG 48 119 COW1_RS04225 NONE COW1_RS04220 NONE COW1_RS04215 898225 .. 898280 - -19.4 -3.14931 GTCAGGTCTTACTAA CGGGGTCAGGTCTTGCAAT-CAAGCA TTCGCG TG-TTGCAATGCAAGACCTGACCCCG CCACGTTTGATTTCA 100 244 COW1_RS04210 897088 .. 897143 - -4.2 -3.62775 ATTACCCGTTAACAA CGGGGTGAGGTCTTGCAAT-CAAGCA TTCGCG TG-TTGCAATACAAGACCTGACCCTG CTACGTGAAAAGGGT 51 179 COW1_RS04205 896580 .. 896590 - -8.2 -3.25942 ATTCCGGGATATGAA GGGC GCT GCCC CATTATTCACTTAGA 59 32 COW1_RS04200 895537 .. 895549 - -6.3 -2.72344 CTGCAGTTGGAAGTA TTTGC TAT GCAAA CTTCACATCCGGTCG 49 52 COW1_RS04195 895008 .. 895053 - -14.1 -2.61216 CGAGGAACGAAGTGA CGCGGCAATCTCCAAACAGCTG AGT CTGCCGTGTG-AGATTGCCACG CTCCGTTTATGCCCT 78 83 COW1_RS04185 893880 .. 893914 - -12.8 -2.66316 CCCGGTATGACACGA TGATGGGTTACGGCGC CAC GCGCCTTCACCCATCC TACAGCTTGTGCTCG 71 151 rluC 889759 .. 889777 - -4.4 -2.97951 GATCGCATGACAAAT GCGCGTCA GGC TGTCCCGC GGTTCCCGTCGGGGC 46 12 COW1_RS04170 NONE COW1_RS04165 887732 .. 887742 - -6.8 -3.78775 GCCGGGATGACGAAA GGGA AAT TCCC AGCCTTCGGCGCCTT 63 204 COW1_RS04135 NONE rpmF 880517 .. 880559 - -14.8 -3.85698 GCCCGGGTGCAGAAA CGCGCGCGGCGCGCGAGCCG ACCGG CTGC-CGCGCGCCGCG-GGG TCGGGCCGATCGGTT 100 41 plsX NONE COW1_RS04120 878483 .. 878499 - -2.9 -4.3208 GTTCACAATTCAAAA TTTCAGC AGC GCCGAAC CCCAGGTGAAGCCGC 64 3 fabD NONE fabG 876327 .. 876372 - -2.6 -4.1899 GTATTGTAGTGAAAA GCCTG-GGGCTAATCCAG-CGGA AAT CCCGTCTGAAC-AGCCCGCGGAC CCTCGCCGCAGCGCC 59 104 acpP 875985 .. 876012 - -12.6 -4.49756 TCGCAAATACTAAAA GGCCGCAGCCAC CAGG GTGGCAGCGGCG CTGAATTGCAGCCTG 100 46 fabF NONE COW1_RS04095 NONE pabC 872380 .. 872391 - -3.6 -3.35679 GCGGCCGATGGAGAA CGGA TTTT CCCG CGTTGACAGCCATGC 49 44 mltG NONE COW1_RS04080 NONE COW1_RS04075 NONE COW1_RS04070 868803 .. 868818 - -3.2 -3.06696 TTTGGGGTCAAGACA CCGGAT GCGA ATCCGT CAAATATACTCCGAA 43 137 COW1_RS04065 868415 .. 868431 - -10.8 -5.06052 TTAAAAAATACAAAA CCGGGC ACGAG GCCCGG TTCCGGATCCGTAAG 100 55 COW1_RS04060 NONE COW1_RS04055 NONE COW1_RS04050 NONE COW1_RS04045 865363 .. 865375 - -10.5 -3.32844 CTTGTGAGCGCAGAA CGCCC GCA GGGCG GCCCCGAAGGGGTGA 69 143 COW1_RS04040 NONE COW1_RS04035 863421 .. 863444 - -9.4 -2.57468 CCCCAGGACACCAAT GCCGCCGGCG ACAT CTTCGGCGGC TGGATCATGGCCCAG 54 459 COW1_RS03995 852526 .. 852554 - -7.3 -4.07568 CCGCTGGGCGGAAAA TCAGCCCCAGCCC TGC GGGTTGCGCCTGA AAAAGCGCCACTCGT 68 143 COW1_RS03990 850961 .. 850977 - -9.3 -3.53563 AGACCGGTGGCGAAA CGGTCCG GCA CGGGCCG ATTCAGCATGGACGC 69 144 COW1_RS03985 NONE COW1_RS03980 848301 .. 848321 - -3.9 -3.16564 TGCTCAGTGCATGAA GTACCGGAC CGC ATCAGGCAC CGCCCCGCAGTGGCA 45 18 nhaD 846762 .. 846780 - -7.4 -3.96148 TTTTTTCATCACAAA TGTGGGCA TAT TGCCCAAA AGGGGTTTACTGATG 68 106 COW1_RS03935 NONE COW1_RS03930 840635 .. 840660 - -20.5 -5.76633 CCACAGACAAAAAAA TCGGGCCGGCA GTTC TGCCGGCCCGA TGCCGAGTCCTCTCT 100 98 COW1_RS03925 NONE rimK NONE COW1_RS03915 NONE COW1_RS03910 NONE COW1_RS03905 836334 .. 836349 - -11.8 -4.00532 GCCTGAAAGACGAAA GCCGCC TCCG GGCGGC TTTTTTATTTATGTG 86 176 COW1_RS03890 832336 .. 832349 - -3.7 -2.64803 CGATGCCGAAACCGA CCGCC TGCT GGGGG CGCACATGATCGGTC 40 314 COW1_RS03870 825463 .. 825482 - -11.4 -3.21747 CCATTGCAGCATCAA CCGGG-CCG AGC CGGACCCGG ATTTCGCCGAATCCA 68 270 COW1_RS03860 824519 .. 824545 - -10 -3.16742 TCCAACTCGCAGGAA GACGCCCGCAGC GCG GCATCGGGCATC CCCGGTGCTACCTGC 66 180 nadA 823223 .. 823246 - -8 -2.52464 TGGCCCGGCAACGGA CGCCCGACGG CGGT CTGTCGGGCC AGACCGGGGTATCTG 53 208 COW1_RS03850 822557 .. 822587 - -7.4 -4.08216 GCAGGCCTCGGAAAA GCTGGCCGAGGCCT ACA AGGTACTGGCCAGC CAGCCCGGCTCGATC 69 166 COW1_RS03830 818467 .. 818483 - -10.8 -3.40371 GATCCGATGAACGAA CCCGCC GGTGA GGCGGG TTTTTTTCGCAAAGG 69 61 COW1_RS03785 NONE COW1_RS03780 NONE COW1_RS03775 810345 .. 810379 - -5 -2.82635 AGTGCCAGCAGCAGA GCAG-GGCAGGGATG GAGACG CATGCCTGTCACTGC AGGTTGAAGTTCACG 44 19 COW1_RS03770 NONE COW1_RS03765 808717 .. 808727 - -4.6 -3.66018 GGACGATGTGAACAA GACC TTC GGCC AGCAGACCATCGGCA 55 347 COW1_RS03745 NONE COW1_RS03740 NONE COW1_RS03735 NONE COW1_RS03730 NONE COW1_RS03725 NONE COW1_RS03720 NONE COW1_RS03715 801164 .. 801174 - -4.6 -3.32963 ACCCGCATTGCAGAA CCCC AGG GGGA CCCGTAACATTCTGA 51 53 COW1_RS03710 800528 .. 800543 - -6 -3.1478 AGTAGTCTAGGAACA GCGCGG CCAT CCGCTC GCATCGGGGCCACGG 52 262 COW1_RS03705 NONE COW1_RS03700 796337 .. 796352 - -5.4 -3.01712 CCGGGCGGTTCAACA CCGT-CC ATA GGCACGG CCGCACGTTTTTCCC 48 182 COW1_RS03695 795731 .. 795748 - -14.1 -5.24129 TGCGGGCACAAAAAA GCCCCGC CGGG GCGGGGC AAGTGCAGGGTGAAA 100 52 COW1_RS03685 794216 .. 794241 - -19.1 -5.40072 TCTCTCCCAAAAAAA CAGGCCACGGT GGAG ACCGTGGCCTG GACGTGCTTCAGCCG 100 56 COW1_RS03680 793912 .. 793953 - -7.2 -3.41126 CCAGAAACGCGACAA CGATGAGGCCTTGACCCGC TGGGC GCGGCACACGGCCT-ACCG CTGGCTGAAGAACAG 56 77 COW1_RS03660 791145 .. 791181 - -20.3 -5.71983 CGAACCATAAAAAAA CCCACGATCACTGCC GGGTGGA GGCAGTGATCGCGGG TCTCGGGTCGGGCTG 100 50 COW1_RS03655 789016 .. 789030 - -2.8 -3.03441 CATGAGGCTGCAATA TCAAAC TGA GTTTGG TTACTCTGAATGAAA 43 186 COW1_RS03650 788330 .. 788354 - -12.2 -3.88498 TGCCCAGAGAGGAAA CGGCCTGAGGC TGAT GCCTCAGGC-G CTGCGGCGGCGGGCA 83 19 COW1_RS03640 NONE COW1_RS03635 785887 .. 785901 - -7.1 -3.06671 ACACTCAGGCGAATA CCACC CAGGT GGTGG CGATGTATTTGACGC 54 0 COW1_RS03630 NONE COW1_RS03625 784330 .. 784358 - -4.4 -2.9834 AGCACTACAACGATA CCCACGGCCACC TGGCG GGCGACTGTGCG CTGCAAGCCGTGGCC 45 353 COW1_RS03605 782129 .. 782145 - -7.9 -5.26316 GCACTGCAGAAAAAA GCCTCAC CTG GTGGGGC TTTTTTTATGTCCGG 93 63 dsrA 777524 .. 777570 - -4.1 -3.80094 CTTAAATTAATACAA CTCGGTTTTGATCCGGGGGCG GGATG CGCCCCCGGTCCATTGCAGAC TGGAGACCTGCTCAG 57 37 dsrB 776351 .. 776384 - -18.3 -3.74693 GGTCAGCTGATTAAA GTGGTGCGGTTAGCGC CGT GCACTAACCGCACC-C TGACCGACTGGCACA 100 59 tusD NONE tusC 775471 .. 775481 - -3.2 -2.72152 TTGATTAGAAACTGA GAAC GAC GTCC TGCTCATCCATCAGG 41 4 tusB NONE COW1_RS03550 774671 .. 774681 - -6.8 -3.9534 AGCGATACTCACAAA CGAC ACC GTCG TCTCCTCACTGTTGC 68 101 COW1_RS03545 NONE COW1_RS03540 NONE COW1_RS03535 NONE COW1_RS03530 NONE COW1_RS03525 NONE nrfD 767680 .. 767721 - -20.9 -3.92869 GCATGGATTCAGAAA CACGGAACGCGCGCAACCG GCGA CGGCTGCGCGCGTTCTGTC AGCATGGAGGTGGAG 100 50 cobB 766256 .. 766269 - -3.7 -2.79796 GGCTATTTTATGACA GCTGC CGGG GCGGC GTCGCCATCACCTGT 43 42 COW1_RS03510 NONE COW1_RS03505 NONE COW1_RS03500 NONE COW1_RS03495 NONE COW1_RS03490 NONE COW1_RS03485 759253 .. 759277 - -5.5 -3.16742 GGTAAGCGGTATCAA CGCGGGTACGG AGG CCGTGCACGAG TCGCTGGCGATCCGT 49 277 COW1_RS03450 NONE COW1_RS03445 750280 .. 750293 - -2.3 -2.52464 CCGCTTCCTAATTGA CGGTA TGGG TGCCG GCCTGTTCGGTGGCC 38 4 COW1_RS03440 NONE COW1_RS03435 748404 .. 748421 - -5.5 -3.30124 GGCGATCCTGGAGAA CCATCAG CAGG CCGACGG CAGCGTCACTGTGCC 51 145 trxB 738894 .. 738910 - -11.5 -5.02074 CGAGGGTGCAAAAAA GCCCACC AAT GGCGGGC TTTAATAACCGGCTG 100 240 COW1_RS03385 NONE COW1_RS03380 736949 .. 736959 - -4.6 -3.06796 CTGCAGGTTAGGCAA CCCC CTC AGGG CTGTCAAACCGCCAG 47 7 COW1_RS03375 736089 .. 736101 - -4.1 -3.58242 AAACACGGACAAACA GGATT CAA AACCC GCTCTCCTGACCACT 51 107 infA 735664 .. 735688 - -17.1 -2.77523 GCCGCACGAACATCA CCGCCCGACCG TCC CGGTTGGGCGG TTTTTTTATGGGCTG 87 75 COW1_RS03355 732250 .. 732280 - -7.4 -2.52676 CACTGTTCGAAGCCA CGCACGGCACCGCC CCC GACATTGCCGGGCA GGACCGGGCCAATCC 49 248 COW1_RS03340 NONE mnmA NONE hflD 726960 .. 726980 - -4 -4.72986 GACCGGGATGAAAAA CCGTC-GTG CCTT CACCGACGA GGCCCGGCCCGTCTG 77 476 acnA 722640 .. 722655 - -4.7 -3.53012 GCCCCCGCGTTTAAA GGGTT TATCTC AACCC GCCAGCTGGCGCAGC 53 19 purB 720983 .. 721031 - -3.3 -4.74801 GAACGGCAGGAAAAA CGGGCGATTGTAGGTCGGGTTA-GC GCA GCGTAACCCGAC--ACG-TCGCCGG AGGGATGTCGGGTTA 73 62 COW1_RS03310 NONE COW1_RS03305 719931 .. 719943 - -5.5 -3.5891 CCGCACAATTAAAGA TGCAG CCG CCGCA GTTCCGGATCAGCGC 55 6 COW1_RS03290 716565 .. 716579 - -4.9 -2.95388 GATTGAATCTATATA CCACG GAGTG CGCGG GGTGGCAATTTGCGC 46 54 COW1_RS03285 715821 .. 715832 - -7.2 -3.60098 ACGCCGGACCGGAAA CCGG AGGA CCGG CCTGAGTAATTGCCA 60 100 COW1_RS03255 710161 .. 710181 - -3.8 -3.28712 GGTCCCGGGCGACAA GGCGCTGG TCGAT CCGGCGGC CTGGGAGGCGATGCG 47 286 COW1_RS03245 707470 .. 707488 - -6.6 -3.15999 CCGCGACAGACCGAA GGCCCTTG CGG CGAAGGCC ACCCACCGACCCGGC 52 141 mgtE 705721 .. 705764 - -6.7 -4.07687 ACGCTGCTTCCAAAA GGC-TGGACCCACGCC-CG ATAAGAGG CATGGCGCGGGTCCTTGCC GGCGATCCGGCGACA 67 220 COW1_RS03225 702709 .. 702721 - -3.3 -3.28712 GGTGGGGGTTGATAA CCAGC CGG ACCGG GATAGTCAGTCCTCC 45 31 COW1_RS03220 701752 .. 701762 - -3.2 -3.03441 GACCAGCCCTCAATA GCAG ACT CTAC TCCCCCTCCAGAACA 43 22 COW1_RS03215 NONE COW1_RS03210 NONE COW1_RS03205 NONE COW1_RS03200 NONE COW1_RS03195 NONE COW1_RS03190 NONE COW1_RS03185 NONE COW1_RS03180 NONE COW1_RS03175 NONE COW1_RS03170 693278 .. 693289 - -2.2 -3.92522 GCGTAACCCGACAAA TCGC GGCT GCAA CCTGTTGGGTTACGG 53 77 COW1_RS03160 691779 .. 691789 - -8.2 -4.02736 AAGGCACAGGACAAA CCCG AGG CGGG GTACATCGCCTTCAG 70 377 COW1_RS03110 679083 .. 679119 - -2.4 -4.15864 CAGAAGAAGCAGAAA TGTA-GGTCGGGTTA-GC GCA GCGTAACCCTACAATACA GCGCGAATCCTGTCG 59 103 COW1_RS03080 674327 .. 674359 - -4.8 -3.17075 CGGGCGGGAATGGAA CTCGATCGCCGCGCCC TGC GGGTGCGG-G-TGGAG GGTTTGCAGGTGACG 47 246 COW1_RS03070 672186 .. 672202 - -4.3 -3.36273 GCTGCGCAATATCAA CCCCGAC TAT ATCCGGG CGCTCATGATGCACG 51 414 COW1_RS03060 670799 .. 670815 - -2.2 -2.66316 CGGTGTATGATACGA GCCTCA TCCGT TGATGC ATGTTCCTGAGCCAG 38 79 COW1_RS03055 669884 .. 669900 - -2.1 -3.96148 GCCTCGGAGGAGAAA TGGGGCG TGC CGGCGCA TATCCTGATGGCCTT 56 499 map NONE glnD 627395 .. 627407 - -3.3 -3.0693 GTGTAAATGAAAGCA GGTTC TAG GTACC AGACGCCGGGTCCTG 43 17 COW1_RS02875 626924 .. 626949 - -19.1 -3.01791 AGCCGCGCCGGAACA CGACAGGCACC GCAG GGTGCCTGTCG CCGAGGTCCGGTCGG 100 52 COW1_RS02870 NONE dapC NONE dapD 622880 .. 622908 - -6 -2.53382 ACCAGGTCCAAGGTA GGTCGGGTCA-GC CGCA GCGTAACCCGACA CAGGGCCGGATGGCG 48 118 COW1_RS02845 NONE COW1_RS02840 NONE COW1_RS02835 NONE COW1_RS02830 NONE COW1_RS02825 NONE COW1_RS02820 617029 .. 617043 - -2.1 -3.7282 GGATCTGATCAAGAA CGATA AGCTG CATCG CGACATCAGCATCGA 51 87 COW1_RS02760 NONE dapE NONE COW1_RS02750 601921 .. 601940 - -7.1 -3.19157 CATGAACTTCATCAA TACGCCG TCATCC CGGCGCA GGCCGGGATCCAGTG 56 191 dctP NONE COW1_RS02740 NONE COW1_RS02735 599037 .. 599075 - -5.4 -3.04398 CTTGTGCGTGAAAAT CGTAGGTCGGGTTA-GCCC GGCA GGGCGTAACCCGACG--CG GCTCGCCGCAGCGTT 49 84 COW1_RS02730 598267 .. 598292 - -3.1 -3.52073 GGCGGAAGAGGAGAA GCGCATCCG CGAACAGC CGGTGGCGC GGACCACGGAGATTC 49 272 COW1_RS02720 NONE cmoA NONE cmoB 594673 .. 594690 - -11.3 -2.52543 ATCGCGGTCAATGGA TTCCCGC CTTC GCGGGAA TGACGGGAAGGACAA 65 101 mfd 590870 .. 590884 - -2.8 -4.24075 ACGCAGTAACATAAA TAAGCC TCT GGTTTA ATCGTCATTGCGAGG 60 141 COW1_RS02695 589842 .. 589873 - -5.6 -3.01745 TGCGCAACAAGTACA GGGTCAGGCGACGC AGGG GCGGGGCCTTTCCC CCCTCGCACCTCTAC 47 275 COW1_RS02560 564490 .. 564511 - -6.6 -3.0634 AACTGGAGGCGAAGA TCC-GCCAG AGCGG CTGGCTGGA GTAGGGTGATCCCTG 52 157 COW1_RS02525 555066 .. 555092 - -11.6 -3.06501 CAGATGCGCATGGAA CTCGAGGAACTG CTG CAGATCCTCAAG CGCTGAGGTATTACT 69 110 COW1_RS02475 NONE COW1_RS02470 NONE COW1_RS02465 543955 .. 543980 - -12.7 -2.71712 CTCGCTGCGGGAAAT GTCGGGTTA-CG CTG CGCTAACCCGAC CTACGGAATTTCTGA 73 379 COW1_RS02455 540258 .. 540269 - -3.6 -3.13258 AATACACGGAACACA CGGA AAAT CCCG GGTTGAAAACCTTTT 45 122 COW1_RS02450 540066 .. 540087 - -15.9 -5.63517 GCCGTAAACAAAAAA GCCCGCATC GACC GATGCGGGC TTTCGCGTTTGGCTC 100 35 COW1_RS02280 500307 .. 500334 - -18.4 -2.82327 TGTTCAGACTGAAAT GCCTCCCCCGCC GGCC GGCGGGGGAGGA GGGAGCCACGGTCGG 100 44 COW1_RS02275 499320 .. 499372 - -9.7 -4.13995 TTGCGAGAAACGAAA GTGACGAAGCAATCTCGTGATCGGG CTG CCGGGTTACGAGATTGCCGCGGCGC TACGCGCCTCGCAAT 80 105 COW1_RS02270 497814 .. 497836 - -7.6 -2.71011 ACGTGCGGTGAACGA TGGGTTGCGC TGC GCTCCACCCA TCCTACGGGTCTGCG 54 63 ubiG NONE COW1_RS02260 NONE COW1_RS02255 NONE hpnC 493750 .. 493781 - -14.4 -2.78816 GGATGGGTGACCAGA GATGGGTTGCGGCG CAGG CGCCTCCACCCATC CTACTTCTGCGGACC 80 26 hpnD NONE COW1_RS02240 NONE COW1_RS02235 490139 .. 490173 - -3.5 -2.88663 ATGCAGGCCGACACA CCGGTGATCACGCCTG CCGG CAGGCA-GACCACTGC CCGCAAGTGGTCGCG 43 512 COW1_RS02225 487944 .. 487975 - -14.4 -2.71924 CACGGCGCGGTAAAT GATGGGTTGCGGCG CAAG CGCCTCCACCCATC CTACGCGATGGAATC 80 26 COW1_RS02180 NONE COW1_RS02175 NONE COW1_RS02170 NONE COW1_RS02165 478038 .. 478076 - -10 -3.12351 TTGGCGCAGACGGAA GCGGCGGCGGACCCGCGG GCG CAGCTGGTCCGCAGCGGT GTCCCGGCGGGGGCC 62 316 COW1_RS02135 NONE COW1_RS02130 NONE COW1_RS02125 471288 .. 471298 - -8.2 -2.66316 CGGTGGACGAGATCA CGCC CGA GGCG ATGGCGCTGCTGACG 52 349 COW1_RS02090 NONE COW1_RS02085 465941 .. 465964 - -13.8 -3.80573 GCCATTACGATCAAA GGCCCGGGGT TCTG ATCCCGGGCC TTTCTTGTATAGCGA 93 58 COW1_RS02060 NONE COW1_RS02055 461502 .. 461513 - -5.8 -2.71364 CTACGCTCGCAATGA CGTG GGGA CACG GGGTCACTGGAATTT 47 78 COW1_RS02050 459904 .. 459915 - -4.4 -3.09878 TTCATCCACCTAACA CAAC ATAT GTTG TCCGTGCCTTCCGTG 47 64 polX 457628 .. 457638 - -6.8 -3.30124 CGTGATCGTGTACAA CACC GAG GGTG CCGATGCCCAGCAGG 54 416 COW1_RS02025 454070 .. 454095 - -13.3 -4.84918 GGCAGAAATAGAAAA GGACCTGACCG GTTC CGGCCAAGTCC TTGATTTCATGGTGG 100 35 COW1_RS02020 NONE COW1_RS02015 451299 .. 451314 - -11.8 -5.0133 GACCCGGTGAAAAAA GGCGGC CGCG GCCGCC TTTTTCATGTCCCTC 100 54 COW1_RS01995 NONE COW1_RS01990 NONE COW1_RS01985 NONE COW1_RS01980 445168 .. 445185 - -9.8 -3.31144 CGGTCAGCCGGAGAA CCGGGC GTTTCA GCCCGG AGGCGGGAGGTGCCG 66 103 COW1_RS01975 NONE COW1_RS01970 443712 .. 443751 - -9.2 -2.78384 GCCCGTCTGATTATA GAGCCCGGGCGGCG CTTCATCAGCCC CGCCGGCCCGGCTC AGCGCATCAGCCCGC 61 24 COW1_RS01965 443150 .. 443171 - -15.1 -4.54727 GGCCGGAAACGAAAA CGCCCCGGC CTGG ACCGGGGCG CCACGGTTCTGTCTG 100 56 hypF NONE hypE 439508 .. 439554 - -8.1 -3.28119 ATGGAGTCAGACGAA GCCTTGTAGGTTGGGTTA-GCCC GCA GGGCGTAAGCCAACGTTCA-GGC CTGTTCGTTGGGTTA 59 160 COW1_RS01945 437316 .. 437336 - -5.4 -3.43203 GCAGGATAACAGGAA TCCGGCGCG GTCT CA-GCCGGA CGGCCGGATCCGGGC 53 17 COW1_RS01940 436590 .. 436601 - -2.2 -3.57144 TTGCGGAGTTGGAAA TCCC GCTG GAGA TCGTCGCCACGGATT 48 503 hypC NONE COW1_RS01870 NONE hypB NONE hypD 421683 .. 421703 - -11.1 -2.79183 GCGACCGGCACGACA GCCTGATCG CGC CGATCTGGC TGCACTGCTTCTACA 60 450 galE NONE COW1_RS01815 NONE COW1_RS01810 NONE COW1_RS01805 409214 .. 409229 - -6 -2.87211 AGGCCGGCTCAGAGA CGCGCC ACCG GGCGCT GGTGAAAGGTGCGGT 51 3 COW1_RS01800 406754 .. 406765 - -7.2 -2.83271 GGACTGGTACAACCA GCGG GTCA CCGC CTGCAAGGACGACGA 50 219 sufB NONE sufC NONE sufD NONE COW1_RS01775 NONE iscA NONE COW1_RS01765 401154 .. 401168 - -6.4 -2.87132 CCTCTGCGGGAGATA TCCCTG AAA CAGAGA CACGCGAATCTGGTA 51 121 COW1_RS01760 400340 .. 400352 - -4.8 -3.45031 TTGGTAAAAACTGAA CAGG GCCCG CCTG ACTCGAGGCTCGTCA 51 204 COW1_RS01745 396384 .. 396417 - -2.9 -2.76322 GCAGTGAATACAGCA GCGACCGGAGCATGC TCAG GCGTGTTCCTGCAGC CAGAGTTCCAGCATC 41 7 COW1_RS01740 395313 .. 395337 - -9.9 -2.9162 CAATCGGCGAAAGGA GGGCGGCGC CGGCAAC GCGCGGCCC CGGCAGGCGCATAGG 62 215 COW1_RS01645 371230 .. 371257 - -2.7 -5.86332 TGAATGTAAAAAAAA TGGACATGATCG GGCGT CGGCCATG-CCA CTCAATTGCGCTGCG 95 117 pepA 370113 .. 370134 - -14.5 -5.71712 GTGTACATAAAAAAA GCCCGCAAT CTGA ATTGCGGGC TTTTTCGTGAGTGCC 100 54 COW1_RS01635 368855 .. 368867 - -6.9 -3.4072 GATGCTGGAGCACAA CGGCA GGG CGCCG GTGGAATGAGGGGAA 58 59 COW1_RS01570 351332 .. 351372 - -4.5 -3.34088 AGGATTACAGAGCAA GTAGGATGGGTGAAGGCGC GCG GCGCCGCAACCCATTATCC AGCTGGCGATGGGTT 51 85 COW1_RS01565 349940 .. 349952 - -4.7 -3.53012 CGCCGTGGTGGCAAA GGCTG ATG CCGCC GTGGCCGGGCTGCTG 52 524 COW1_RS01485 NONE COW1_RS01480 NONE COW1_RS01475 331501 .. 331511 - -2.4 -2.62184 GCCGCGTCCACATCA GCCG AAG CGCC CCGCCTGGTAGCGGT 38 12 COW1_RS01470 330344 .. 330357 - -5.9 -3.35679 GGTGCTGATGGATAA CGGCG ATGC CACCG TGACCATGCTGCGTG 55 492 COW1_RS01450 323886 .. 323901 - -3.2 -3.35679 GCGGGCGAGGGAGAA GGGC GCGATCAT GCCC CGGCTCCGCCGTGCG 47 18 COW1_RS01445 NONE COW1_RS01440 321795 .. 321809 - -4.2 -3.41051 CGAGGGGCAGGAGAA CTGCCA GGG CGGCAA GCGCTGCCTGACCCA 49 315 COW1_RS01425 318802 .. 318819 - -8.3 -3.05384 GCGCTGCGCATCGAA CCGGAGC GTCT GCGCCGG GTGCGCGAGCAGCGC 55 234 ppsA 313983 .. 313993 - -6.8 -3.48276 CGCTTTCTCATAGAA TCCC TTC GGGA TCCATCATGAGTACC 60 150 COW1_RS01400 NONE COW1_RS01395 NONE COW1_RS01390 NONE rsgA 310044 .. 310065 - -2.2 -4.13995 GCGGGACAAAGCAAA GCGAAGAC TGACCT GCATTCGC TGCATTTGCCGACCT 59 162 COW1_RS01345 NONE COW1_RS01340 303127 .. 303168 - -10 -5.28481 GAGTTAATGAAAAAA GTCGGGCCGTCTGCCGCCGC GCGG GCGGCGGC-G-CGGGCCGGG TGTATTCAGATCAGT 100 36 COW1_RS01335 301845 .. 301862 - -12.7 -5.30616 TCAGGCAAAGAAAAA GGCCCCT GAAA AGGGGCC TTTGACTTGCTGCGG 100 56 COW1_RS01330 299735 .. 299768 - -20.4 -4.07568 TGGCTGGGTTGAAAA GACACCGGCCCCGGT GGCGA ACCGGGGCCGGTG-C AGCGGGCGGGACGGG 100 57 COW1_RS01315 296960 .. 296992 - -14.1 -2.71924 CACGGCGCGGTAAAT GATGGGTTACGGCGC ATT GCGCCTCCACCCATC CTACGCCTTCAGACA 80 26 COW1_RS01310 294254 .. 294295 - -6.6 -3.10354 CATAGGCAGGCAATA CGTGATTCCGTCATCCCGGC GCAG GCCGGGATC-CAGAAGC-CG CCGCGGGTATCGGAT 52 87 COW1_RS01305 292827 .. 292851 - -7.8 -3.32844 CCCGGCAGGGCATAA CCCGACGC-GG ACTC CCTGTGTCGGG TTACGCTGCGCTGAT 61 90 COW1_RS01300 292176 .. 292197 - -3.6 -3.28712 GGTGCTGGCGGATAA CCCCAACG TCGCCG CGCTGGTG GACAACGGCTGGCTG 47 215 COW1_RS01280 285343 .. 285375 - -7.6 -2.62983 CCTACCGGGACATTA CGCCGGACGAGGCCG GTGA CGGTCGC-TCCGACG GGCAACGGGTACGCT 50 436 COW1_RS01270 283510 .. 283527 - -4.9 -3.00651 GCCTATACGATAAAT CTGCCAGA CTT TCT-GCAG GAAATACCCGGTTCT 46 404 COW1_RS01265 NONE COW1_RS01260 279514 .. 279528 - -7.1 -3.05343 GGGATATCTGCAATA CCCTG GATTA CAGGG AGCTTCTCGCTATCA 51 186 COW1_RS01225 271560 .. 271574 - -2.8 -4.36595 CATGGAAAGTGAAAA TTAGAC TGT GTCTAG AGCGGTTCAATCAAC 64 121 COW1_RS01220 NONE COW1_RS01215 270189 .. 270211 - -2.6 -3.84451 CTCTTCAAACGTAAA TCGTCAGC CGTATTC GCCGACGT GCTTCAGAATGCTCC 53 6 COW1_RS01210 266905 .. 266919 - -3.4 -2.87564 GCATGCCGGGAGACA CCGCTC ATC GCGCAG CCCCTGCACCAATCG 42 15 COW1_RS01205 NONE COW1_RS01200 NONE COW1_RS01195 NONE COW1_RS01190 253606 .. 253622 - -5.1 -3.14344 GACCGCCTCTAGCAA CCGTG CCTCGTT CACGG GCAGGCAGCGCTCGG 47 158 COW1_RS01185 NONE COW1_RS01180 NONE vsr 250653 .. 250665 - -9.1 -3.27525 TGCTCTGAAATCGAA TCGGC GCA GCCGA TTGACTCATGTAAAC 63 31 COW1_RS01170 249555 .. 249569 - -4.2 -3.86015 GAGTCCGGGCACAAA GCGC GGCCCAT GCGC GAAGAATGGGTAGCT 57 208 COW1_RS01020 NONE COW1_RS01015 NONE COW1_RS01010 225547 .. 225574 - -14.2 -4.10566 ACTGAAGAACAAGAA GCCCAAGCGCCT GATG AGGCACTTGAGC CAGTGCAGGGGTGAG 100 43 COW1_RS00940 NONE COW1_RS00935 213108 .. 213120 - -6.2 -3.35371 TATATGTTCAAGCAA GCCC GCAAG GGGC GCTGGGAATTGCCCG 55 192 COW1_RS00920 NONE COW1_RS00915 NONE COW1_RS00910 NONE COW1_RS00905 208515 .. 208525 - -2.4 -3.23452 AGGTTCAGAATCCAA GCTG TTT CCGC TGCAGCTCCCAGACC 44 4 COW1_RS00875 198929 .. 198977 - -9.7 -2.82623 GCTGCCCCATAACGA CGAAGGGGAAGCG--CGGGCC TAATCGAAC AGCTCGAACGCTTCCCCTTCG GATGACTCACCACAG 61 211 COW1_RS00870 NONE COW1_RS00865 NONE COW1_RS00860 195951 .. 195978 - -11.2 -4.62471 GGCAAGCCCGAAAAA GCAACGGCGAGG TCGC CCCCGCCGTCGT GTCCAGCCCAGCACC 93 52 COW1_RS00855 NONE COW1_RS00850 NONE COW1_RS00845 192886 .. 192902 - -5.1 -4.62336 AGTCTACTGGAAAAA CTTGTTG AAT CAACAGG TTAATTTACTTTTTA 72 89 COW1_RS00840 191860 .. 191874 - -7 -2.78384 GCCCGGGTGAGGATA GCGGCG TGA CGACGC TCCCGGGCTTTCGAC 51 107 COW1_RS00835 189984 .. 190001 - -11.3 -3.23274 CTGTGGATAATTGAA GCCGTCA CCAG TGACGGC GAGGTCGATATTCAC 66 228 COW1_RS00815 NONE COW1_RS00810 NONE COW1_RS00805 185205 .. 185215 - -6.8 -3.31144 CCTGTATGCCGACAA CCAG CAT CTGG TGCGCGCAGTGCAGG 54 362 COW1_RS00755 163837 .. 163853 - -2.2 -4.21194 GCCGAGCATGGAAAA TGGCTG GCATT CAGGCA GCGGGTCCAGAGCCC 59 97 COW1_RS00745 NONE COW1_RS00740 161720 .. 161737 - -14.1 -4.96848 TCCGCCATATAAAAA GGGCCCC AACC GGGGCCC TTTTTATATGGCGGA 100 272 COW1_RS00690 NONE COW1_RS00685 151972 .. 151982 - -2.6 -3.62597 TGCATTCGGCAACAA TTTT AGT AAAA ATTCATGCATTTATG 47 152 COW1_RS00680 NONE COW1_RS00675 NONE COW1_RS00670 148409 .. 148421 - -4.7 -4.18401 CGATACAGGCCAAAA CGGTC AAC GTCCG GACCACTCACCGCAC 66 440 COW1_RS00650 NONE COW1_RS00645 145619 .. 145648 - -12.3 -2.71101 CGCGGAAATAACGGA CGAAAGATGGCACC TGG AG-GCCATCTTTCG CACTTGAAAAACACA 70 320 COW1_RS00640 145158 .. 145172 - -2.1 -2.99471 CCATGCCGACAGATA CCGACC AAAT GGT-GG CGTGCAATGGACAGT 40 88 COW1_RS00635 NONE COW1_RS00630 NONE COW1_RS00625 NONE COW1_RS00620 NONE COW1_RS00615 NONE COW1_RS00610 139066 .. 139076 - -2.4 -3.05384 GTTCGGTTGATGTAA GGGC GGG GCAC CGTCAGGTACCTTCC 41 94 COW1_RS00605 138206 .. 138221 - -6 -3.57144 CCCCTTACCCTTAAA GGGCCC TTTA GGGCGC ACACTGCTACGTCAG 58 68 COW1_RS00600 NONE ssb 136844 .. 136866 - -9.9 -2.64747 TCATGGCACCAGAAT CCG-CCAGGA CTCA TCCTGGACGG CCTCGATGTTGTCTG 60 371 COW1_RS00590 NONE COW1_RS00585 133402 .. 133417 - -3.2 -3.28712 CCGTTCTGTCCAGAA CAGGTG AATC CATCTG TCTTCCTCCTTGTCT 45 40 COW1_RS00580 133144 .. 133155 - -5.8 -3.33419 ATGTGCAAACTAATA GACG ATAA CGTC AGTCCTCATCAAGGA 53 24 COW1_RS00575 132148 .. 132182 - -13 -2.72799 GCCGGAGACACACCA CGCCCCTGCACGGGAA GGTGT TTCCCG-GCAGGG-CG GTTGAAAATGTAGTC 73 134 COW1_RS00570 131776 .. 131818 - -14.1 -3.16564 TGGCCACGGTAGTAA TCGTCTCTCCGCAGGGCCG ACACG CGACCCTCTGGAGAGACGC CGCAAAATGCGGCGC 83 46 COW1_RS00565 131070 .. 131084 - -3.4 -2.81272 CATTACCACGGAAAC GCCGCG TCG CATGGC TATTCCTCCCTATGT 41 35 COW1_RS00560 130751 .. 130795 - -19.3 -3.57144 GTCGCCACGGTGAAA TCGCCTTTCCCCAAGGCCCGC AGC GCAGGCCTTTGGGAAAGGCCG CCCCCGAAGGGGCGG 100 48 COW1_RS00555 NONE COW1_RS00550 129748 .. 129762 - -5.6 -2.74192 GAGCCGGTAACACCA TGCCCC GTG GGGGAA GATGGTTTCCCCGGC 47 63 COW1_RS00545 129038 .. 129082 - -21.5 -3.89346 TCGCCACGGTAGAAA CTACCTTTCCCGAAGGCCCGC GCC GCAGGCCTTCGGGAAAGGCCC CCCGCAGGGGACCGG 100 51 radC 128297 .. 128341 - -14.3 -4.18197 ATGGTTGATTGAAAA GCCACGGGAGGCG-ATGCCCC GCAAG GGGGCATACGCC-CCCGAGGG GTTTGGGCCGGCAAT 100 54 COW1_RS00535 NONE COW1_RS00530 126670 .. 126714 - -13.5 -3.89346 TCGCCACGGTAGAAA CCGCCTTTCCGCAAGGCCCGC GCC GCAGGCCTTCGGGAAAGGCCC GCCCCGGAGGGGCGG 93 47 COW1_RS00525 125835 .. 125878 - -14.6 -3.75332 AGTGTTGAAGTGAAA CCACCGAAGGCACGTCTCCCC ACC GGGGATAGATGCC-CCGGTGG GGAAGATGACGCTAG 95 43 COW1_RS00520 123526 .. 123545 - -10.6 -5.36965 GAATATCAGAAAAAA TGGCCGCC CGAA GGCGGCCT GGAGATTAGGCGGCA 100 31 COW1_RS00510 120598 .. 120608 - -2.4 -3.36878 CCCAGTCATTCACAA CCGG CTG CCTG TTGGCCCTGGTATTC 46 252 COW1_RS00465 NONE COW1_RS00460 NONE COW1_RS00455 NONE traL NONE traE NONE COW1_RS00440 NONE COW1_RS00435 NONE COW1_RS00430 NONE COW1_RS00425 NONE traC NONE COW1_RS00415 NONE lepB NONE COW1_RS00405 NONE COW1_RS00400 NONE trbC NONE COW1_RS00390 98315 .. 98342 - -3.4 -3.14132 TGCGTTGGTCAGTAA CATGAGCA-GGAG AAG CGCCGTTCTCATG GTTGTGACCTCGCCT 43 21 COW1_RS00385 NONE traF NONE COW1_RS00375 NONE COW1_RS00370 91906 .. 91927 - -8.8 -3.98661 GAGAGGGAGTATAAA CTTGCGAA ACAGGA TTCGCAAG AAAACATTGCGTTAC 75 317 COW1_RS00360 NONE COW1_RS00355 NONE COW1_RS00350 88716 .. 88735 - -10.7 -3.59979 TTTCTCCATTTGAAA CAGCGCC CCATAT GGCGCTG TGACGGCCCTTTCGG 71 85 COW1_RS00345 NONE COW1_RS00340 NONE COW1_RS00335 NONE COW1_RS00330 81317 .. 81329 - -4.8 -3.51825 GGACGCCAAGGACAA GGCT CTTGT AGCC GCAATATACCAGCGT 52 490 COW1_RS00315 78835 .. 78847 - -5.5 -3.53563 ATACGGCGGTTCAAA GGCCT GGA AAGCC CAGTGGTGGTGCTGG 54 298 COW1_RS00285 NONE traD NONE COW1_RS00275 NONE COW1_RS00270 64762 .. 64776 - -8.6 -3.20382 TTCCACATCTACGAA CTGGAT GGC ATCCAG CGTATCGAAACAAAG 63 465 gstA NONE COW1_RS00250 61981 .. 61994 - -9.5 -2.86564 CAACCGAAGCGAAAC GCGCG ATGC CGCGC CCAGGTATCGGGCGG 62 103 COW1_RS00245 NONE COW1_RS00240 NONE COW1_RS00235 NONE COW1_RS00230 57637 .. 57648 - -7.2 -3.29461 CAAGTTCTCCGACAA CGGC GGCC GCCG CACCTTACTCGTCTG 54 396 istB 37859 .. 37880 - -6.5 -3.14051 CTATTCCGACGAAGA TGACCGTCG ATTC CGACGATCG TGACCGCCTGTGAAG 52 79 COW1_RS00125 34458 .. 34484 - -12.2 -3.30159 GGAAGGCCGTGACAA CCTGGCGCGAAG AGG CTGCGCGACAGG GTTTGTCGCAAGCCG 75 270 mutS 30055 .. 30085 - -3.1 -3.36492 GGCGTAATCCGACAA CATCAGCGGTACC TGTCG GGTTACGCTGGCG CCAACCCGACCTACA 47 197 COW1_RS00110 27769 .. 27788 - -2.8 -3.83026 GGCGTCGAGATGAAA CAGCACATG AAG CATG-GCGG TTGCCGCTCCCGCTC 55 39 COW1_RS00105 NONE COW1_RS00100 NONE COW1_RS00095 NONE COW1_RS00090 NONE COW1_RS00085 NONE COW1_RS00080 NONE COW1_RS00075 19876 .. 19907 - -8.6 -2.72144 GCAGTGGCGGCAAAC GATGGGTTGCGGCG CAAA CGCCTTCACCCATC CTGCGCCTTCAGGCA 58 108 COW1_RS00070 16747 .. 16767 - -2.6 -3.57144 TGTTTCATGGCGAAA CACAGT ACAGGGACA ACTGTG CAAGCCAGGGGAAGC 47 168 COW1_RS00065 NONE COW1_RS00060 13041 .. 13084 - -5.9 -3.05384 GGTCGGGTTAGCGAA GCGTAACCCGACAGAGATG CCGCGC CGTGAACGTCGGGTTACGC CCTTCGGGCTAACCC 49 71 COW1_RS00055 11880 .. 11905 - -4 -3.59979 GCGCTGGACGGCAAA CCCTTGCG ATGATGTAGA CGCAAGAG ACAAGGTGCAAGGAT 51 235 COW1_RS00040 7134 .. 7152 - -4.4 -4.25104 CTTCGTCGACGAAAA CCTCGCCA GCC TGGCCCGG GTCTTCCTCGAGGCG 66 147 mobA 4623 .. 4679 - -5.2 -3.82499 ACGAAACCCACTAAA GGGGTTATTGCTTGCATTGCCATGGCGC TAT GCGCC-TGGCAATGCATACA-CAAGGCA TTTTTGTGGTTTTCG 61 57 mobB 3867 .. 3880 - -4.5 -2.53213 GAATTGGCGAAGGCA GGCAC GTCA ATGCC GGCGCGCACCGGCTC 0 201