THII_RS00005	SM00382	ATPases associated with a variety of cellular activities
THII_RS00005	SM01086	C-terminal, D2-small domain, of ClpB protein
THII_RS00065	SM00822	THII_RS00065
THII_RS00065	SM00825	Beta-ketoacyl synthase
THII_RS00065	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THII_RS00070	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS00110	SM00563	Phosphate acyltransferases
THII_RS00140	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THII_RS00155	SM00671	Sel1-like repeats.
THII_RS00170	SM00834	Putative regulatory protein
THII_RS00180	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS00185	SM00411	bacterial (prokaryotic) histone like domain
THII_RS00190	SM00028	Tetratricopeptide repeats
THII_RS00195	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
THII_RS00210	SM00028	Tetratricopeptide repeats
THII_RS00220	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS00255	SM00052	Putative diguanylate phosphodiesterase
THII_RS00255	SM00091	PAS domain
THII_RS00255	SM00267	diguanylate cyclase
THII_RS00255	SM00448	cheY-homologous receiver domain
THII_RS00340	SM00479	THII_RS00340
THII_RS00355	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS00355	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS00355	SM00387	Histidine kinase-like ATPases
THII_RS00355	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS00355	SM00448	cheY-homologous receiver domain
THII_RS00375	SM00671	Sel1-like repeats.
THII_RS00485	SM01130	THII_RS00485
THII_RS00495	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS00515	SM00986	Uracil DNA glycosylase superfamily
THII_RS00515	SM00987	UreE urease accessory protein, C-terminal domain 
THII_RS00520	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS00630	SM01209	THII_RS00630
THII_RS00630	SM01210	THII_RS00630
THII_RS00635	SM01152	THII_RS00635
THII_RS00640	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS00660	SM00028	Tetratricopeptide repeats
THII_RS00695	SM00382	ATPases associated with a variety of cellular activities
THII_RS00735	SM00411	bacterial (prokaryotic) histone like domain
THII_RS00740	SM00382	ATPases associated with a variety of cellular activities
THII_RS00740	SM00464	Found in ATP-dependent protease La (LON)
THII_RS00745	SM00382	ATPases associated with a variety of cellular activities
THII_RS00745	SM00994	ClpX C4-type zinc finger
THII_RS00745	SM01086	C-terminal, D2-small domain, of ClpB protein
THII_RS00780	SM01004	Delta-aminolevulinic acid dehydratase
THII_RS00785	SM00255	Toll - interleukin 1 - resistance
THII_RS00790	SM00873	B3/4 domain
THII_RS00790	SM00874	tRNA synthetase B5 domain
THII_RS00790	SM00896	Ferredoxin-fold anticodon binding domain
THII_RS00795	SM00411	bacterial (prokaryotic) histone like domain
THII_RS00800	SM00422	helix_turn_helix, mercury resistance
THII_RS00815	SM00857	Resolvase, N terminal domain
THII_RS00905	SM00646	THII_RS00905
THII_RS00910	SM00244	prohibitin homologues
THII_RS00925	SM00357	Cold shock protein domain
THII_RS00925	SM00382	ATPases associated with a variety of cellular activities
THII_RS00925	SM00959	Rho termination factor, N-terminal domain
THII_RS00970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS00970	SM00387	Histidine kinase-like ATPases
THII_RS00970	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS00975	SM00382	ATPases associated with a variety of cellular activities
THII_RS00995	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
THII_RS01000	SM01092	CO dehydrogenase flavoprotein C-terminal domain
THII_RS01020	SM00849	Metallo-beta-lactamase superfamily
THII_RS01080	SM00320	WD40 repeats
THII_RS01085	SM00382	ATPases associated with a variety of cellular activities
THII_RS01225	SM00046	Diacylglycerol kinase catalytic domain (presumed)
THII_RS01255	SM01409	THII_RS01255
THII_RS01260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THII_RS01260	SM00954	Region found in RelA / SpoT proteins
THII_RS01270	SM01011	Aminopeptidase P, N-terminal domain
THII_RS01300	SM01230	THII_RS01300
THII_RS01310	SM00320	WD40 repeats
THII_RS01340	SM00642	Alpha-amylase domain
THII_RS01345	SM00387	Histidine kinase-like ATPases
THII_RS01345	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS01345	SM00448	cheY-homologous receiver domain
THII_RS01350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS01350	SM00387	Histidine kinase-like ATPases
THII_RS01350	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS01350	SM00448	cheY-homologous receiver domain
THII_RS01395	SM00235	Zinc-dependent metalloprotease
THII_RS01450	SM00662	RNA polymerases D
THII_RS01455	SM00363	S4 RNA-binding domain
THII_RS01455	SM01390	THII_RS01455
THII_RS01515	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THII_RS01520	SM01374	THII_RS01520
THII_RS01540	SM00322	K homology RNA-binding domain
THII_RS01555	SM01382	THII_RS01555
THII_RS01555	SM01383	THII_RS01555
THII_RS01575	SM01403	THII_RS01575
THII_RS01585	SM00838	Elongation factor G C-terminus
THII_RS01585	SM00889	Elongation factor G, domain IV
THII_RS01670	SM00663	RNA polymerase I subunit A N-terminus
THII_RS01715	SM00327	von Willebrand factor (vWF) type A domain
THII_RS01740	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS01770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS01770	SM00387	Histidine kinase-like ATPases
THII_RS01770	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS01790	SM00387	Histidine kinase-like ATPases
THII_RS01790	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS01790	SM00448	cheY-homologous receiver domain
THII_RS01795	SM00244	prohibitin homologues
THII_RS01830	SM00327	von Willebrand factor (vWF) type A domain
THII_RS01935	SM00382	ATPases associated with a variety of cellular activities
THII_RS01950	SM00831	Cation transporter/ATPase, N-terminus
THII_RS01960	SM00833	Cobalamin synthesis protein cobW C-terminal domain
THII_RS01980	SM00905	Dihydroneopterin aldolase
THII_RS02005	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS02055	SM00382	ATPases associated with a variety of cellular activities
THII_RS02055	SM00487	DEAD-like helicases superfamily
THII_RS02055	SM00490	helicase superfamily c-terminal domain
THII_RS02055	SM00847	Helicase associated domain (HA2)  Add an annotation
THII_RS02070	SM00977	TilS substrate C-terminal domain
THII_RS02075	SM00387	Histidine kinase-like ATPases
THII_RS02095	SM00060	Fibronectin type 3 domain
THII_RS02095	SM00710	Parallel beta-helix repeats
THII_RS02105	SM00841	Elongation factor P, C-terminal
THII_RS02105	SM01185	THII_RS02105
THII_RS02125	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS02125	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THII_RS02135	SM00382	ATPases associated with a variety of cellular activities
THII_RS02145	SM00650	Ribosomal RNA adenine dimethylases
THII_RS02150	SM00318	Staphylococcal nuclease homologues
THII_RS02235	SM00387	Histidine kinase-like ATPases
THII_RS02235	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS02280	SM00320	WD40 repeats
THII_RS02330	SM00919	Malic enzyme, NAD binding domain
THII_RS02330	SM01274	THII_RS02330
THII_RS02360	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
THII_RS02430	SM00382	ATPases associated with a variety of cellular activities
THII_RS02440	SM00382	ATPases associated with a variety of cellular activities
THII_RS02450	SM01321	THII_RS02450
THII_RS02465	SM00382	ATPases associated with a variety of cellular activities
THII_RS02465	SM00448	cheY-homologous receiver domain
THII_RS02505	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS02505	SM00387	Histidine kinase-like ATPases
THII_RS02505	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS02505	SM00448	cheY-homologous receiver domain
THII_RS02535	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS02540	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS02565	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS02580	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THII_RS02645	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THII_RS02700	SM00448	cheY-homologous receiver domain
THII_RS02705	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS02710	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS02710	SM00448	cheY-homologous receiver domain
THII_RS02730	SM00966	SpoVT / AbrB like domain 
THII_RS02745	SM00448	cheY-homologous receiver domain
THII_RS02750	SM00138	Methyltransferase, chemotaxis proteins 
THII_RS02755	SM00185	Armadillo/beta-catenin-like repeats
THII_RS02755	SM00567	E-Z type HEAT repeats
THII_RS02760	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS02765	SM00260	Two component signalling adaptor domain
THII_RS02770	SM00073	Histidine Phosphotransfer domain
THII_RS02770	SM00260	Two component signalling adaptor domain
THII_RS02770	SM00387	Histidine kinase-like ATPases
THII_RS02770	SM01231	THII_RS02770
THII_RS02775	SM00448	cheY-homologous receiver domain
THII_RS02805	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THII_RS02805	SM00465	GIY-YIG type nucleases (URI domain)
THII_RS02840	SM00487	DEAD-like helicases superfamily
THII_RS02840	SM00490	helicase superfamily c-terminal domain
THII_RS02870	SM00825	Beta-ketoacyl synthase
THII_RS02995	SM00434	DNA Topoisomerase IV
THII_RS03180	SM00968	SMC proteins Flexible Hinge Domain
THII_RS03205	SM00912	haemagglutination activity domain
THII_RS03225	SM00732	Likely ribonuclease with RNase H fold.
THII_RS03265	SM00382	ATPases associated with a variety of cellular activities
THII_RS03280	SM00382	ATPases associated with a variety of cellular activities
THII_RS03295	SM00710	Parallel beta-helix repeats
THII_RS03300	SM00710	Parallel beta-helix repeats
THII_RS03395	SM00448	cheY-homologous receiver domain
THII_RS03395	SM00850	LytTr DNA-binding domain
THII_RS03405	SM00460	Transglutaminase/protease-like homologues
THII_RS03460	SM00382	ATPases associated with a variety of cellular activities
THII_RS03485	SM00028	Tetratricopeptide repeats
THII_RS03500	SM00851	MGS-like domain
THII_RS03500	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
THII_RS03505	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
THII_RS03535	SM00382	ATPases associated with a variety of cellular activities
THII_RS03610	SM00480	DNA polymerase III beta subunit
THII_RS03690	SM00060	Fibronectin type 3 domain
THII_RS03690	SM00710	Parallel beta-helix repeats
THII_RS03695	SM00226	Low molecular weight phosphatase family
THII_RS03715	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS03715	SM00387	Histidine kinase-like ATPases
THII_RS03715	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS03715	SM00448	cheY-homologous receiver domain
THII_RS03720	SM00091	PAS domain
THII_RS03720	SM00387	Histidine kinase-like ATPases
THII_RS03720	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS03720	SM00448	cheY-homologous receiver domain
THII_RS03755	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS03755	SM00282	Laminin G domain
THII_RS03755	SM00560	LamG-like jellyroll fold domain
THII_RS03785	SM00382	ATPases associated with a variety of cellular activities
THII_RS03835	SM00460	Transglutaminase/protease-like homologues
THII_RS03850	SM00387	Histidine kinase-like ATPases
THII_RS03850	SM00448	cheY-homologous receiver domain
THII_RS03875	SM00382	ATPases associated with a variety of cellular activities
THII_RS03875	SM00962	SRP54-type protein, GTPase domain
THII_RS03875	SM00963	SRP54-type protein, helical bundle domain
THII_RS03880	SM00382	ATPases associated with a variety of cellular activities
THII_RS03895	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
THII_RS03900	SM00861	Transketolase, pyrimidine binding domain
THII_RS03935	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS03950	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS03990	SM00448	cheY-homologous receiver domain
THII_RS03995	SM00028	Tetratricopeptide repeats
THII_RS03995	SM00387	Histidine kinase-like ATPases
THII_RS03995	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS04025	SM00382	ATPases associated with a variety of cellular activities
THII_RS04040	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS04160	SM00822	THII_RS04160
THII_RS04185	SM00487	DEAD-like helicases superfamily
THII_RS04185	SM00490	helicase superfamily c-terminal domain
THII_RS04290	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THII_RS04310	SM00226	Low molecular weight phosphatase family
THII_RS04330	SM00320	WD40 repeats
THII_RS04355	SM00052	Putative diguanylate phosphodiesterase
THII_RS04355	SM00267	diguanylate cyclase
THII_RS04355	SM00448	cheY-homologous receiver domain
THII_RS04360	SM00448	cheY-homologous receiver domain
THII_RS04500	SM00382	ATPases associated with a variety of cellular activities
THII_RS04555	SM00387	Histidine kinase-like ATPases
THII_RS04555	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS04555	SM00448	cheY-homologous receiver domain
THII_RS04560	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS04560	SM00876	Biotin and Thiamin Synthesis associated domain
THII_RS04620	SM00479	THII_RS04620
THII_RS04630	SM00448	cheY-homologous receiver domain
THII_RS04660	SM00421	helix_turn_helix, Lux Regulon
THII_RS04660	SM00448	cheY-homologous receiver domain
THII_RS04675	SM00257	Lysin motif
THII_RS04675	SM00287	Bacterial SH3 domain homologues
THII_RS04685	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS04705	SM00028	Tetratricopeptide repeats
THII_RS04715	SM00327	von Willebrand factor (vWF) type A domain
THII_RS04750	SM00487	DEAD-like helicases superfamily
THII_RS04750	SM00490	helicase superfamily c-terminal domain
THII_RS04775	SM00421	helix_turn_helix, Lux Regulon
THII_RS04775	SM00448	cheY-homologous receiver domain
THII_RS04780	SM00387	Histidine kinase-like ATPases
THII_RS04780	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS04780	SM00448	cheY-homologous receiver domain
THII_RS04785	SM00460	Transglutaminase/protease-like homologues
THII_RS04795	SM00382	ATPases associated with a variety of cellular activities
THII_RS04805	SM00363	S4 RNA-binding domain
THII_RS04830	SM00706	Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
THII_RS04960	SM00028	Tetratricopeptide repeats
THII_RS04965	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS04965	SM00869	Autotransporter beta-domain
THII_RS05010	SM00382	ATPases associated with a variety of cellular activities
THII_RS05010	SM01086	C-terminal, D2-small domain, of ClpB protein
THII_RS05025	SM00387	Histidine kinase-like ATPases
THII_RS05025	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS05025	SM00448	cheY-homologous receiver domain
THII_RS05055	SM00966	SpoVT / AbrB like domain 
THII_RS05060	SM00849	Metallo-beta-lactamase superfamily
THII_RS05075	SM00854	Bacterial capsule synthesis protein PGA_cap
THII_RS05080	SM00363	S4 RNA-binding domain
THII_RS05090	SM01329	THII_RS05090
THII_RS05095	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THII_RS05115	SM00387	Histidine kinase-like ATPases
THII_RS05115	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS05115	SM00448	cheY-homologous receiver domain
THII_RS05120	SM01001	AIR carboxylase
THII_RS05160	SM00506	Appr-1"-p processing enzyme
THII_RS05175	SM00823	Phosphopantetheine attachment site
THII_RS05405	SM00881	CoA binding domain
THII_RS05415	SM01321	THII_RS05415
THII_RS05440	SM00477	DNA/RNA non-specific endonuclease
THII_RS05440	SM00892	DNA/RNA non-specific endonuclease
THII_RS05505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS05505	SM00387	Histidine kinase-like ATPases
THII_RS05505	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS05510	SM00382	ATPases associated with a variety of cellular activities
THII_RS05510	SM00448	cheY-homologous receiver domain
THII_RS05530	SM00327	von Willebrand factor (vWF) type A domain
THII_RS05540	SM00220	Serine/Threonine protein kinases, catalytic domain
THII_RS05630	SM00857	Resolvase, N terminal domain
THII_RS05655	SM00924	MgtE intracellular N domain
THII_RS05660	SM00563	Phosphate acyltransferases
THII_RS05665	SM00880	THII_RS05665
THII_RS05665	SM01118	THII_RS05665
THII_RS05690	SM00382	ATPases associated with a variety of cellular activities
THII_RS05770	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS05770	SM00322	K homology RNA-binding domain
THII_RS05790	SM01387	THII_RS05790
THII_RS05795	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS05795	SM00322	K homology RNA-binding domain
THII_RS05835	SM00091	PAS domain
THII_RS05835	SM00267	diguanylate cyclase
THII_RS05845	SM00387	Histidine kinase-like ATPases
THII_RS05845	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS05845	SM00448	cheY-homologous receiver domain
THII_RS05910	SM00382	ATPases associated with a variety of cellular activities
THII_RS05915	SM00897	FIST N domain
THII_RS05915	SM01204	THII_RS05915
THII_RS05935	SM01323	THII_RS05935
THII_RS05950	SM00387	Histidine kinase-like ATPases
THII_RS05950	SM00433	TopoisomeraseII
THII_RS05970	SM00341	Helicase and RNase D C-terminal
THII_RS05970	SM00487	DEAD-like helicases superfamily
THII_RS05970	SM00490	helicase superfamily c-terminal domain
THII_RS05970	SM00956	THII_RS05970
THII_RS06010	SM01259	THII_RS06010
THII_RS06065	SM00967	RNA 2'-O ribose methyltransferase substrate binding
THII_RS06085	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS06085	SM00387	Histidine kinase-like ATPases
THII_RS06085	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS06085	SM00448	cheY-homologous receiver domain
THII_RS06085	SM01358	THII_RS06085
THII_RS06090	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS06090	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS06145	SM00382	ATPases associated with a variety of cellular activities
THII_RS06165	SM00116	Domain in cystathionine beta-synthase and other proteins.
THII_RS06225	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
THII_RS06225	SM00474	3'-5' exonuclease
THII_RS06225	SM00475	5'-3' exonuclease
THII_RS06225	SM00482	DNA polymerase A domain
THII_RS06290	SM00073	Histidine Phosphotransfer domain
THII_RS06290	SM00260	Two component signalling adaptor domain
THII_RS06290	SM00387	Histidine kinase-like ATPases
THII_RS06290	SM00448	cheY-homologous receiver domain
THII_RS06290	SM01231	THII_RS06290
THII_RS06300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS06305	SM00260	Two component signalling adaptor domain
THII_RS06310	SM00448	cheY-homologous receiver domain
THII_RS06315	SM00448	cheY-homologous receiver domain
THII_RS06330	SM00960	Roadblock/LC7 domain
THII_RS06375	SM00955	THII_RS06375
THII_RS06385	SM00852	Probable molybdopterin binding domain
THII_RS06415	SM00507	HNH nucleases
THII_RS06445	SM00382	ATPases associated with a variety of cellular activities
THII_RS06455	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS06480	SM00382	ATPases associated with a variety of cellular activities
THII_RS06490	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
THII_RS06530	SM00479	THII_RS06530
THII_RS06695	SM00387	Histidine kinase-like ATPases
THII_RS06695	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS06695	SM00448	cheY-homologous receiver domain
THII_RS06740	SM01060	THII_RS06740
THII_RS06760	SM00957	SecA DEAD-like domain
THII_RS06760	SM00958	SecA preprotein cross-linking domain
THII_RS06800	SM00450	Rhodanese Homology Domain
THII_RS06835	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS06835	SM00091	PAS domain
THII_RS06835	SM00387	Histidine kinase-like ATPases
THII_RS06835	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS06835	SM00448	cheY-homologous receiver domain
THII_RS06835	SM01079	THII_RS06835
THII_RS06840	SM00387	Histidine kinase-like ATPases
THII_RS06840	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS06840	SM00448	cheY-homologous receiver domain
THII_RS06845	SM00562	THII_RS06845
THII_RS06855	SM00028	Tetratricopeptide repeats
THII_RS06885	SM00704	CDGSH-type zinc finger. Function unknown.
THII_RS06890	SM00487	DEAD-like helicases superfamily
THII_RS06890	SM00490	helicase superfamily c-terminal domain
THII_RS06905	SM00881	CoA binding domain
THII_RS06915	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
THII_RS06925	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
THII_RS06925	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
THII_RS06925	SM00382	ATPases associated with a variety of cellular activities
THII_RS06980	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS06985	SM00226	Low molecular weight phosphatase family
THII_RS07055	SM00834	Putative regulatory protein
THII_RS07130	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS07130	SM00387	Histidine kinase-like ATPases
THII_RS07135	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS07185	SM00861	Transketolase, pyrimidine binding domain
THII_RS07225	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS07285	SM00487	DEAD-like helicases superfamily
THII_RS07285	SM00490	helicase superfamily c-terminal domain
THII_RS07290	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS07310	SM00883	Chaperonin 10 Kd subunit
THII_RS07340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THII_RS07340	SM00954	Region found in RelA / SpoT proteins
THII_RS07345	SM00382	ATPases associated with a variety of cellular activities
THII_RS07375	SM00912	haemagglutination activity domain
THII_RS07380	SM00382	ATPases associated with a variety of cellular activities
THII_RS07395	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS07440	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS07440	SM00220	Serine/Threonine protein kinases, catalytic domain
THII_RS07440	SM00387	Histidine kinase-like ATPases
THII_RS07440	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS07470	SM01321	THII_RS07470
THII_RS07485	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THII_RS07490	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THII_RS07525	SM00382	ATPases associated with a variety of cellular activities
THII_RS07555	SM00487	DEAD-like helicases superfamily
THII_RS07555	SM00490	helicase superfamily c-terminal domain
THII_RS07575	SM00267	diguanylate cyclase
THII_RS07575	SM00448	cheY-homologous receiver domain
THII_RS07585	SM00363	S4 RNA-binding domain
THII_RS07645	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS07710	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS07720	SM00448	cheY-homologous receiver domain
THII_RS07720	SM00862	Transcriptional regulatory protein, C terminal
THII_RS07725	SM00387	Histidine kinase-like ATPases
THII_RS07725	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS07785	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS07785	SM00448	cheY-homologous receiver domain
THII_RS07790	SM00062	Bacterial periplasmic substrate-binding proteins
THII_RS07795	SM00387	Histidine kinase-like ATPases
THII_RS07850	SM00382	ATPases associated with a variety of cellular activities
THII_RS07850	SM01086	C-terminal, D2-small domain, of ClpB protein
THII_RS07890	SM00382	ATPases associated with a variety of cellular activities
THII_RS07980	SM00448	cheY-homologous receiver domain
THII_RS07980	SM00862	Transcriptional regulatory protein, C terminal
THII_RS07985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS07985	SM00387	Histidine kinase-like ATPases
THII_RS07985	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS07995	SM00054	EF-hand, calcium binding motif
THII_RS08010	SM00173	Ras subfamily of RAS small GTPases
THII_RS08010	SM00174	Rho (Ras homology) subfamily of Ras-like small GTPases
THII_RS08010	SM00175	Rab subfamily of small GTPases
THII_RS08015	SM00387	Histidine kinase-like ATPases
THII_RS08015	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS08015	SM00448	cheY-homologous receiver domain
THII_RS08025	SM00798	AICARFT/IMPCHase bienzyme
THII_RS08025	SM00851	MGS-like domain
THII_RS08170	SM00382	ATPases associated with a variety of cellular activities
THII_RS08175	SM00382	ATPases associated with a variety of cellular activities
THII_RS08215	SM00887	Ethylbenzene dehydrogenase
THII_RS08250	SM00364	Leucine-rich repeats, bacterial type
THII_RS08280	SM01264	THII_RS08280
THII_RS08285	SM00327	von Willebrand factor (vWF) type A domain
THII_RS08310	SM00248	ankyrin repeats
THII_RS08430	SM00829	Enoylreductase
THII_RS08480	SM00952	THII_RS08480
THII_RS08530	SM00935	Outer membrane protein (OmpH-like)
THII_RS08540	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THII_RS08610	SM00984	UDP binding domain
THII_RS08685	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS08685	SM00419	helix_turn_helix, cAMP Regulatory protein
THII_RS08700	SM00904	Riboflavin kinase
THII_RS08720	SM00387	Histidine kinase-like ATPases
THII_RS08720	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS08725	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THII_RS08760	SM00448	cheY-homologous receiver domain
THII_RS08760	SM01012	THII_RS08760
THII_RS08770	SM00912	haemagglutination activity domain
THII_RS08780	SM00382	ATPases associated with a variety of cellular activities
THII_RS08815	SM00116	Domain in cystathionine beta-synthase and other proteins.
THII_RS08815	SM01091	Transporter associated domain
THII_RS08830	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS08845	SM00450	Rhodanese Homology Domain
THII_RS08855	SM00487	DEAD-like helicases superfamily
THII_RS08855	SM00490	helicase superfamily c-terminal domain
THII_RS08940	SM00054	EF-hand, calcium binding motif
THII_RS08995	SM01321	THII_RS08995
THII_RS09005	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS09005	SM00091	PAS domain
THII_RS09010	SM00387	Histidine kinase-like ATPases
THII_RS09010	SM00433	TopoisomeraseII
THII_RS09075	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS09080	SM00387	Histidine kinase-like ATPases
THII_RS09080	SM00448	cheY-homologous receiver domain
THII_RS09090	SM00387	Histidine kinase-like ATPases
THII_RS09090	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS09090	SM00448	cheY-homologous receiver domain
THII_RS09175	SM00028	Tetratricopeptide repeats
THII_RS09210	SM00861	Transketolase, pyrimidine binding domain
THII_RS09310	SM00054	EF-hand, calcium binding motif
THII_RS09335	SM00382	ATPases associated with a variety of cellular activities
THII_RS09365	SM00981	THII_RS09365
THII_RS09380	SM00400	zinc finger
THII_RS09380	SM00493	THII_RS09380
THII_RS09410	SM00052	Putative diguanylate phosphodiesterase
THII_RS09410	SM00267	diguanylate cyclase
THII_RS09430	SM00382	ATPases associated with a variety of cellular activities
THII_RS09470	SM00260	Two component signalling adaptor domain
THII_RS09475	SM00028	Tetratricopeptide repeats
THII_RS09475	SM00138	Methyltransferase, chemotaxis proteins 
THII_RS09480	SM00260	Two component signalling adaptor domain
THII_RS09485	SM00073	Histidine Phosphotransfer domain
THII_RS09485	SM00260	Two component signalling adaptor domain
THII_RS09485	SM00387	Histidine kinase-like ATPases
THII_RS09485	SM00448	cheY-homologous receiver domain
THII_RS09490	SM00448	cheY-homologous receiver domain
THII_RS09495	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS09495	SM00448	cheY-homologous receiver domain
THII_RS09535	SM00912	haemagglutination activity domain
THII_RS09575	SM01321	THII_RS09575
THII_RS09595	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS09595	SM00387	Histidine kinase-like ATPases
THII_RS09595	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS09595	SM00448	cheY-homologous receiver domain
THII_RS09630	SM00267	diguanylate cyclase
THII_RS09705	SM00382	ATPases associated with a variety of cellular activities
THII_RS09735	SM00112	Cadherin repeats.
THII_RS09780	SM00448	cheY-homologous receiver domain
THII_RS09800	SM00073	Histidine Phosphotransfer domain
THII_RS09800	SM00260	Two component signalling adaptor domain
THII_RS09800	SM00387	Histidine kinase-like ATPases
THII_RS09800	SM00448	cheY-homologous receiver domain
THII_RS09800	SM01231	THII_RS09800
THII_RS09820	SM00706	Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
THII_RS09860	SM00670	Large family of predicted nucleotide-binding domains
THII_RS09870	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS09975	SM00382	ATPases associated with a variety of cellular activities
THII_RS10105	SM00020	Trypsin-like serine protease
THII_RS10110	SM00487	DEAD-like helicases superfamily
THII_RS10110	SM00490	helicase superfamily c-terminal domain
THII_RS10115	SM01058	CarD-like/TRCF domain
THII_RS10130	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS10130	SM00091	PAS domain
THII_RS10130	SM00267	diguanylate cyclase
THII_RS10135	SM01359	THII_RS10135
THII_RS10135	SM01360	THII_RS10135
THII_RS10170	SM00960	Roadblock/LC7 domain
THII_RS10260	SM00028	Tetratricopeptide repeats
THII_RS10285	SM00448	cheY-homologous receiver domain
THII_RS10305	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS10310	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
THII_RS10350	SM01007	Class II Aldolase and Adducin N-terminal domain
THII_RS10360	SM00382	ATPases associated with a variety of cellular activities
THII_RS10400	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THII_RS10415	SM00382	ATPases associated with a variety of cellular activities
THII_RS10445	SM00642	Alpha-amylase domain
THII_RS10480	SM00563	Phosphate acyltransferases
THII_RS10490	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS10560	SM00028	Tetratricopeptide repeats
THII_RS10580	SM00563	Phosphate acyltransferases
THII_RS10665	SM00900	THII_RS10665
THII_RS10705	SM00387	Histidine kinase-like ATPases
THII_RS10705	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS10705	SM00448	cheY-homologous receiver domain
THII_RS10735	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS10735	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS10740	SM00260	Two component signalling adaptor domain
THII_RS10745	SM00073	Histidine Phosphotransfer domain
THII_RS10745	SM00260	Two component signalling adaptor domain
THII_RS10745	SM00387	Histidine kinase-like ATPases
THII_RS10745	SM01231	THII_RS10745
THII_RS10750	SM00448	cheY-homologous receiver domain
THII_RS10775	SM00093	SERine  Proteinase INhibitors
THII_RS10785	SM00363	S4 RNA-binding domain
THII_RS10800	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS10800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS10860	SM00823	Phosphopantetheine attachment site
THII_RS10860	SM00825	Beta-ketoacyl synthase
THII_RS10860	SM01294	THII_RS10860
THII_RS10865	SM00822	THII_RS10865
THII_RS10865	SM00823	Phosphopantetheine attachment site
THII_RS10865	SM00825	Beta-ketoacyl synthase
THII_RS10865	SM00826	THII_RS10865
THII_RS10865	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THII_RS10865	SM01294	THII_RS10865
THII_RS10895	SM00822	THII_RS10895
THII_RS10895	SM00823	Phosphopantetheine attachment site
THII_RS10895	SM00825	Beta-ketoacyl synthase
THII_RS10900	SM00822	THII_RS10900
THII_RS10900	SM00823	Phosphopantetheine attachment site
THII_RS10900	SM00825	Beta-ketoacyl synthase
THII_RS10900	SM00826	THII_RS10900
THII_RS10900	SM00829	Enoylreductase
THII_RS10900	SM01294	THII_RS10900
THII_RS10930	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THII_RS10940	SM00825	Beta-ketoacyl synthase
THII_RS10950	SM00507	HNH nucleases
THII_RS11050	SM01321	THII_RS11050
THII_RS11140	SM00857	Resolvase, N terminal domain
THII_RS11175	SM00382	ATPases associated with a variety of cellular activities
THII_RS11225	SM00769	Water Stress and Hypersensitive response
THII_RS11270	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS11290	SM00271	DnaJ molecular chaperone homology domain
THII_RS11305	SM00287	Bacterial SH3 domain homologues
THII_RS11335	SM00138	Methyltransferase, chemotaxis proteins 
THII_RS11340	SM00028	Tetratricopeptide repeats
THII_RS11390	SM01400	THII_RS11390
THII_RS11410	SM00028	Tetratricopeptide repeats
THII_RS11420	SM00670	Large family of predicted nucleotide-binding domains
THII_RS11425	SM00116	Domain in cystathionine beta-synthase and other proteins.
THII_RS11425	SM01240	THII_RS11425
THII_RS11430	SM00327	von Willebrand factor (vWF) type A domain
THII_RS11435	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS11480	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS11480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS11480	SM00387	Histidine kinase-like ATPases
THII_RS11480	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS11480	SM00448	cheY-homologous receiver domain
THII_RS11555	SM00450	Rhodanese Homology Domain
THII_RS11585	SM00382	ATPases associated with a variety of cellular activities
THII_RS11585	SM00448	cheY-homologous receiver domain
THII_RS11600	SM00116	Domain in cystathionine beta-synthase and other proteins.
THII_RS11625	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS11625	SM01080	THII_RS11625
THII_RS11660	SM00382	ATPases associated with a variety of cellular activities
THII_RS11660	SM01086	C-terminal, D2-small domain, of ClpB protein
THII_RS11675	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS11710	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
THII_RS11735	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS11735	SM00220	Serine/Threonine protein kinases, catalytic domain
THII_RS11735	SM00387	Histidine kinase-like ATPases
THII_RS11735	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS11750	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS11795	SM00912	haemagglutination activity domain
THII_RS11800	SM00028	Tetratricopeptide repeats
THII_RS11820	SM00244	prohibitin homologues
THII_RS11825	SM00244	prohibitin homologues
THII_RS11840	SM00788	Adenylosuccinate synthetase
THII_RS11890	SM00448	cheY-homologous receiver domain
THII_RS11890	SM00862	Transcriptional regulatory protein, C terminal
THII_RS11895	SM00387	Histidine kinase-like ATPases
THII_RS11895	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS11935	SM00478	endonuclease III
THII_RS11935	SM00525	THII_RS11935
THII_RS11990	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS12010	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
THII_RS12010	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
THII_RS12010	SM00493	THII_RS12010
THII_RS12020	SM00938	Nitrogen regulatory protein P-II
THII_RS12030	SM00327	von Willebrand factor (vWF) type A domain
THII_RS12030	SM00609	Vault protein Inter-alpha-Trypsin domain
THII_RS12050	SM00271	DnaJ molecular chaperone homology domain
THII_RS12065	SM00448	cheY-homologous receiver domain
THII_RS12075	SM00138	Methyltransferase, chemotaxis proteins 
THII_RS12085	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS12085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS12180	SM00257	Lysin motif
THII_RS12190	SM00382	ATPases associated with a variety of cellular activities
THII_RS12310	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THII_RS12335	SM00358	Double-stranded RNA binding motif
THII_RS12335	SM00535	Ribonuclease III family
THII_RS12455	SM00382	ATPases associated with a variety of cellular activities
THII_RS12465	SM01111	THII_RS12465
THII_RS12545	SM00842	Cell division protein FtsA
THII_RS12550	SM00864	Tubulin/FtsZ family, GTPase domain
THII_RS12550	SM00865	Tubulin/FtsZ family, C-terminal domain
THII_RS12580	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
THII_RS12640	SM00387	Histidine kinase-like ATPases
THII_RS12645	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS12645	SM00382	ATPases associated with a variety of cellular activities
THII_RS12690	SM00900	THII_RS12690
THII_RS12715	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS12715	SM00091	PAS domain
THII_RS12715	SM00387	Histidine kinase-like ATPases
THII_RS12720	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS12720	SM00382	ATPases associated with a variety of cellular activities
THII_RS12725	SM01111	THII_RS12725
THII_RS12760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS12760	SM00387	Histidine kinase-like ATPases
THII_RS12760	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS12765	SM00382	ATPases associated with a variety of cellular activities
THII_RS12765	SM00448	cheY-homologous receiver domain
THII_RS12770	SM00387	Histidine kinase-like ATPases
THII_RS12770	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS12770	SM00448	cheY-homologous receiver domain
THII_RS12775	SM00646	THII_RS12775
THII_RS12805	SM00434	DNA Topoisomerase IV
THII_RS12830	SM00108	Bulb-type mannose-specific lectin
THII_RS12835	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS12860	SM00450	Rhodanese Homology Domain
THII_RS12870	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THII_RS12895	SM00382	ATPases associated with a variety of cellular activities
THII_RS12910	SM00853	MutL C terminal dimerisation domain
THII_RS12910	SM01340	THII_RS12910
THII_RS12915	SM00062	Bacterial periplasmic substrate-binding proteins
THII_RS12975	SM00912	haemagglutination activity domain
THII_RS13010	SM00271	DnaJ molecular chaperone homology domain
THII_RS13085	SM00257	Lysin motif
THII_RS13090	SM00257	Lysin motif
THII_RS13170	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
THII_RS13215	SM00060	Fibronectin type 3 domain
THII_RS13215	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS13215	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS13245	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS13330	SM00267	diguanylate cyclase
THII_RS13350	SM00382	ATPases associated with a variety of cellular activities
THII_RS13360	SM00448	cheY-homologous receiver domain
THII_RS13415	SM00271	DnaJ molecular chaperone homology domain
THII_RS13475	SM00852	Probable molybdopterin binding domain
THII_RS13480	SM01350	THII_RS13480
THII_RS13525	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
THII_RS13525	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THII_RS13530	SM00649	Ribosomal protein L11/L12
THII_RS13555	SM00663	RNA polymerase I subunit A N-terminus
THII_RS13570	SM00382	ATPases associated with a variety of cellular activities
THII_RS13585	SM00382	ATPases associated with a variety of cellular activities
THII_RS13620	SM00487	DEAD-like helicases superfamily
THII_RS13620	SM00490	helicase superfamily c-terminal domain
THII_RS13620	SM00982	THII_RS13620
THII_RS13620	SM01058	CarD-like/TRCF domain
THII_RS13630	SM00836	DALR anticodon binding domain
THII_RS13645	SM00382	ATPases associated with a variety of cellular activities
THII_RS13645	SM00448	cheY-homologous receiver domain
THII_RS13650	SM00387	Histidine kinase-like ATPases
THII_RS13650	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS13685	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
THII_RS13685	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
THII_RS13700	SM00357	Cold shock protein domain
THII_RS13745	SM00382	ATPases associated with a variety of cellular activities
THII_RS13775	SM00320	WD40 repeats
THII_RS13800	SM00823	Phosphopantetheine attachment site
THII_RS13880	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS13905	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
THII_RS13905	SM01232	THII_RS13905
THII_RS14015	SM00382	ATPases associated with a variety of cellular activities
THII_RS14025	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS14060	SM00448	cheY-homologous receiver domain
THII_RS14070	SM00937	THII_RS14070
THII_RS14190	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
THII_RS14220	SM00028	Tetratricopeptide repeats
THII_RS14235	SM00912	haemagglutination activity domain
THII_RS14270	SM00344	helix_turn_helix ASNC type
THII_RS14275	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS14305	SM00710	Parallel beta-helix repeats
THII_RS14320	SM00382	ATPases associated with a variety of cellular activities
THII_RS14335	SM00706	Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
THII_RS14405	SM00996	S-adenosyl-L-homocysteine hydrolase
THII_RS14405	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
THII_RS14455	SM00470	ParB-like nuclease domain
THII_RS14485	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS14505	SM00382	ATPases associated with a variety of cellular activities
THII_RS14595	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS14615	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THII_RS14660	SM00028	Tetratricopeptide repeats
THII_RS14680	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS14680	SM00091	PAS domain
THII_RS14690	SM00327	von Willebrand factor (vWF) type A domain
THII_RS14695	SM00840	THII_RS14695
THII_RS14700	SM00387	Histidine kinase-like ATPases
THII_RS14720	SM00387	Histidine kinase-like ATPases
THII_RS14720	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS14720	SM00448	cheY-homologous receiver domain
THII_RS14730	SM00382	ATPases associated with a variety of cellular activities
THII_RS14750	SM00382	ATPases associated with a variety of cellular activities
THII_RS14750	SM00448	cheY-homologous receiver domain
THII_RS14770	SM01321	THII_RS14770
THII_RS14840	SM00836	DALR anticodon binding domain
THII_RS14840	SM01016	Arginyl tRNA synthetase N terminal dom
THII_RS14865	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS14875	SM00838	Elongation factor G C-terminus
THII_RS14875	SM00889	Elongation factor G, domain IV
THII_RS14885	SM00481	DNA polymerase alpha chain like domain
THII_RS14960	SM01211	THII_RS14960
THII_RS15020	SM00327	von Willebrand factor (vWF) type A domain
THII_RS15030	SM00091	PAS domain
THII_RS15030	SM00387	Histidine kinase-like ATPases
THII_RS15030	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS15035	SM00448	cheY-homologous receiver domain
THII_RS15035	SM00862	Transcriptional regulatory protein, C terminal
THII_RS15045	SM00220	Serine/Threonine protein kinases, catalytic domain
THII_RS15045	SM01080	THII_RS15045
THII_RS15050	SM00331	Sigma factor PP2C-like phosphatases
THII_RS15050	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
THII_RS15055	SM00331	Sigma factor PP2C-like phosphatases
THII_RS15055	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
THII_RS15075	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS15075	SM00091	PAS domain
THII_RS15075	SM00267	diguanylate cyclase
THII_RS15085	SM00634	Bacterial Ig-like domain (group 1)
THII_RS15090	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS15130	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS15175	SM00387	Histidine kinase-like ATPases
THII_RS15175	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS15180	SM00448	cheY-homologous receiver domain
THII_RS15180	SM00862	Transcriptional regulatory protein, C terminal
THII_RS15215	SM00327	von Willebrand factor (vWF) type A domain
THII_RS15235	SM00382	ATPases associated with a variety of cellular activities
THII_RS15235	SM00962	SRP54-type protein, GTPase domain
THII_RS15235	SM00963	SRP54-type protein, helical bundle domain
THII_RS15240	SM00382	ATPases associated with a variety of cellular activities
THII_RS15335	SM00382	ATPases associated with a variety of cellular activities
THII_RS15335	SM00448	cheY-homologous receiver domain
THII_RS15350	SM01234	THII_RS15350
THII_RS15355	SM00382	ATPases associated with a variety of cellular activities
THII_RS15355	SM00464	Found in ATP-dependent protease La (LON)
THII_RS15360	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS15360	SM00357	Cold shock protein domain
THII_RS15360	SM00955	THII_RS15360
THII_RS15380	SM01091	Transporter associated domain
THII_RS15430	SM00382	ATPases associated with a variety of cellular activities
THII_RS15505	SM00849	Metallo-beta-lactamase superfamily
THII_RS15525	SM00364	Leucine-rich repeats, bacterial type
THII_RS15525	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS15525	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS15565	SM00320	WD40 repeats
THII_RS15570	SM00320	WD40 repeats
THII_RS15575	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS15575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS15595	SM00387	Histidine kinase-like ATPases
THII_RS15595	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS15595	SM00448	cheY-homologous receiver domain
THII_RS15600	SM00062	Bacterial periplasmic substrate-binding proteins
THII_RS15610	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS15620	SM01080	THII_RS15620
THII_RS15675	SM00034	C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
THII_RS15730	SM00634	Bacterial Ig-like domain (group 1)
THII_RS15745	SM00382	ATPases associated with a variety of cellular activities
THII_RS15860	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS15915	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THII_RS15915	SM00292	breast cancer carboxy-terminal domain
THII_RS15915	SM00532	Ligase N family
THII_RS15985	SM00878	Biotin carboxylase C-terminal domain
THII_RS16035	SM00463	Small MutS-related domain
THII_RS16075	SM01068	Putative carbohydrate binding domain
THII_RS16080	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS16080	SM00419	helix_turn_helix, cAMP Regulatory protein
THII_RS16105	SM00749	bacterial OsmY and nodulation domain
THII_RS16135	SM00028	Tetratricopeptide repeats
THII_RS16265	SM00937	THII_RS16265
THII_RS16290	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
THII_RS16340	SM01321	THII_RS16340
THII_RS16435	SM00961	Ribulose bisphosphate carboxylase, small chain
THII_RS16445	SM00507	HNH nucleases
THII_RS16475	SM00382	ATPases associated with a variety of cellular activities
THII_RS16590	SM01018	B12 binding domain
THII_RS16600	SM00387	Histidine kinase-like ATPases
THII_RS16600	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS16610	SM00100	Cyclic nucleotide-monophosphate binding domain
THII_RS16655	SM00966	SpoVT / AbrB like domain 
THII_RS16680	SM00881	CoA binding domain
THII_RS16705	SM00564	beta-propeller repeat
THII_RS16735	SM00331	Sigma factor PP2C-like phosphatases
THII_RS16755	SM00912	haemagglutination activity domain
THII_RS16780	SM00966	SpoVT / AbrB like domain 
THII_RS16790	SM00060	Fibronectin type 3 domain
THII_RS16810	SM00830	Chorismate mutase type II
THII_RS16825	SM00287	Bacterial SH3 domain homologues
THII_RS16915	SM00060	Fibronectin type 3 domain
THII_RS16915	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS16915	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS16925	SM00072	Guanylate kinase homologues.
THII_RS16935	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS16935	SM00091	PAS domain
THII_RS16935	SM00387	Histidine kinase-like ATPases
THII_RS16935	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS16935	SM00448	cheY-homologous receiver domain
THII_RS16950	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS16950	SM00091	PAS domain
THII_RS16960	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS16960	SM00091	PAS domain
THII_RS16965	SM00838	Elongation factor G C-terminus
THII_RS16975	SM00240	Forkhead associated domain
THII_RS16975	SM00382	ATPases associated with a variety of cellular activities
THII_RS17015	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS17020	SM00363	S4 RNA-binding domain
THII_RS17065	SM00671	Sel1-like repeats.
THII_RS17095	SM00861	Transketolase, pyrimidine binding domain
THII_RS17110	SM00387	Histidine kinase-like ATPases
THII_RS17110	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS17110	SM00448	cheY-homologous receiver domain
THII_RS17115	SM00448	cheY-homologous receiver domain
THII_RS17115	SM00862	Transcriptional regulatory protein, C terminal
THII_RS17135	SM00507	HNH nucleases
THII_RS17145	SM01005	Alanine racemase, C-terminal domain
THII_RS17150	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
THII_RS17150	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
THII_RS17205	SM00387	Histidine kinase-like ATPases
THII_RS17205	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS17205	SM00448	cheY-homologous receiver domain
THII_RS17210	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS17210	SM00220	Serine/Threonine protein kinases, catalytic domain
THII_RS17210	SM00387	Histidine kinase-like ATPases
THII_RS17210	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS17210	SM00448	cheY-homologous receiver domain
THII_RS17350	SM00364	Leucine-rich repeats, bacterial type
THII_RS17350	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS17395	SM00320	WD40 repeats
THII_RS17405	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS17405	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS17425	SM00936	Penicillin-binding protein 5, C-terminal domain 
THII_RS17475	SM00845	GatB domain
THII_RS17515	SM00116	Domain in cystathionine beta-synthase and other proteins.
THII_RS17565	SM00710	Parallel beta-helix repeats
THII_RS17600	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THII_RS17640	SM00899	THII_RS17640
THII_RS17645	SM00899	THII_RS17645
THII_RS17670	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS17670	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS17680	SM00917	LeuA allosteric (dimerisation) domain
THII_RS17705	SM00382	ATPases associated with a variety of cellular activities
THII_RS17725	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS17730	SM00116	Domain in cystathionine beta-synthase and other proteins.
THII_RS17730	SM01329	THII_RS17730
THII_RS17745	SM00382	ATPases associated with a variety of cellular activities
THII_RS17775	SM00020	Trypsin-like serine protease
THII_RS17785	SM00825	Beta-ketoacyl synthase
THII_RS17795	SM00822	THII_RS17795
THII_RS17800	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THII_RS17925	SM00382	ATPases associated with a variety of cellular activities
THII_RS17940	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THII_RS17955	SM00829	Enoylreductase
THII_RS17970	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS17970	SM01080	THII_RS17970
THII_RS18000	SM00271	DnaJ molecular chaperone homology domain
THII_RS18005	SM01192	THII_RS18005
THII_RS18005	SM01193	THII_RS18005
THII_RS18110	SM00645	Papain family cysteine protease
THII_RS18150	SM00479	THII_RS18150
THII_RS18240	SM00248	ankyrin repeats
THII_RS18250	SM00028	Tetratricopeptide repeats
THII_RS18375	SM00360	RNA recognition motif
THII_RS18385	SM00729	Elongator protein 3, MiaB family, Radical SAM
THII_RS18440	SM00387	Histidine kinase-like ATPases
THII_RS18440	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS18440	SM00448	cheY-homologous receiver domain
THII_RS18455	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS18455	SM00732	Likely ribonuclease with RNase H fold.
THII_RS18495	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS18500	SM00387	Histidine kinase-like ATPases
THII_RS18500	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS18500	SM00448	cheY-homologous receiver domain
THII_RS18500	SM01358	THII_RS18500
THII_RS18510	SM00855	Phosphoglycerate mutase family
THII_RS18625	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS18640	SM00487	DEAD-like helicases superfamily
THII_RS18640	SM00490	helicase superfamily c-terminal domain
THII_RS18660	SM01228	THII_RS18660
THII_RS18670	SM00986	Uracil DNA glycosylase superfamily
THII_RS18670	SM00987	UreE urease accessory protein, C-terminal domain 
THII_RS18710	SM01057	Eukaryotic-type carbonic anhydrase
THII_RS18735	SM00855	Phosphoglycerate mutase family
THII_RS18745	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THII_RS18745	SM00245	tail specific protease
THII_RS18770	SM00028	Tetratricopeptide repeats
THII_RS18780	SM00028	Tetratricopeptide repeats
THII_RS18785	SM00028	Tetratricopeptide repeats
THII_RS18790	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS18790	SM00387	Histidine kinase-like ATPases
THII_RS18800	SM00267	diguanylate cyclase
THII_RS18800	SM00448	cheY-homologous receiver domain
THII_RS18830	SM00893	Electron transfer flavoprotein domain
THII_RS18835	SM00893	Electron transfer flavoprotein domain
THII_RS18910	SM00479	THII_RS18910
THII_RS18945	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THII_RS18960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS18960	SM00387	Histidine kinase-like ATPases
THII_RS18990	SM00327	von Willebrand factor (vWF) type A domain
THII_RS18995	SM00327	von Willebrand factor (vWF) type A domain
THII_RS19000	SM00387	Histidine kinase-like ATPases
THII_RS19000	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19000	SM00448	cheY-homologous receiver domain
THII_RS19010	SM00062	Bacterial periplasmic substrate-binding proteins
THII_RS19010	SM00387	Histidine kinase-like ATPases
THII_RS19010	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19010	SM00448	cheY-homologous receiver domain
THII_RS19115	SM00530	Helix-turn-helix XRE-family like proteins 
THII_RS19125	SM00267	diguanylate cyclase
THII_RS19125	SM00448	cheY-homologous receiver domain
THII_RS19175	SM00478	endonuclease III
THII_RS19195	SM00316	Ribosomal protein S1-like RNA-binding domain
THII_RS19205	SM00382	ATPases associated with a variety of cellular activities
THII_RS19205	SM00448	cheY-homologous receiver domain
THII_RS19280	SM00670	Large family of predicted nucleotide-binding domains
THII_RS19290	SM00052	Putative diguanylate phosphodiesterase
THII_RS19290	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19290	SM00091	PAS domain
THII_RS19290	SM00267	diguanylate cyclase
THII_RS19300	SM00244	prohibitin homologues
THII_RS19325	SM00986	Uracil DNA glycosylase superfamily
THII_RS19325	SM00987	UreE urease accessory protein, C-terminal domain 
THII_RS19330	SM00917	LeuA allosteric (dimerisation) domain
THII_RS19350	SM00849	Metallo-beta-lactamase superfamily
THII_RS19360	SM00448	cheY-homologous receiver domain
THII_RS19400	SM00382	ATPases associated with a variety of cellular activities
THII_RS19480	SM01207	THII_RS19480
THII_RS19515	SM00965	Secretin and TonB N terminus short domain
THII_RS19520	SM00634	Bacterial Ig-like domain (group 1)
THII_RS19550	SM00028	Tetratricopeptide repeats
THII_RS19585	SM00644	THII_RS19585
THII_RS19665	SM00091	PAS domain
THII_RS19665	SM00267	diguanylate cyclase
THII_RS19665	SM00448	cheY-homologous receiver domain
THII_RS19715	SM00347	helix_turn_helix multiple antibiotic resistance protein
THII_RS19750	SM00220	Serine/Threonine protein kinases, catalytic domain
THII_RS19755	SM00073	Histidine Phosphotransfer domain
THII_RS19755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19755	SM00091	PAS domain
THII_RS19755	SM00387	Histidine kinase-like ATPases
THII_RS19755	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19755	SM00448	cheY-homologous receiver domain
THII_RS19775	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS19785	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19785	SM00091	PAS domain
THII_RS19785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS19785	SM00387	Histidine kinase-like ATPases
THII_RS19785	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19785	SM00448	cheY-homologous receiver domain
THII_RS19790	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS19790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS19795	SM00028	Tetratricopeptide repeats
THII_RS19795	SM00287	Bacterial SH3 domain homologues
THII_RS19795	SM01324	THII_RS19795
THII_RS19830	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS19830	SM00073	Histidine Phosphotransfer domain
THII_RS19830	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19830	SM00091	PAS domain
THII_RS19830	SM00387	Histidine kinase-like ATPases
THII_RS19830	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19830	SM00448	cheY-homologous receiver domain
THII_RS19835	SM00771	ZipA, C-terminal domain (FtsZ-binding)
THII_RS19845	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
THII_RS19870	SM00357	Cold shock protein domain
THII_RS19875	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS19875	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19875	SM00091	PAS domain
THII_RS19875	SM00387	Histidine kinase-like ATPases
THII_RS19875	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19875	SM00448	cheY-homologous receiver domain
THII_RS19880	SM00052	Putative diguanylate phosphodiesterase
THII_RS19880	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19880	SM00091	PAS domain
THII_RS19880	SM00267	diguanylate cyclase
THII_RS19880	SM01079	THII_RS19880
THII_RS19900	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS19915	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS19915	SM00387	Histidine kinase-like ATPases
THII_RS19915	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19915	SM00448	cheY-homologous receiver domain
THII_RS19920	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS19920	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS19925	SM00257	Lysin motif
THII_RS19930	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19930	SM00387	Histidine kinase-like ATPases
THII_RS19935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS19935	SM01358	THII_RS19935
THII_RS19940	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
THII_RS19945	SM00028	Tetratricopeptide repeats
THII_RS19980	SM00028	Tetratricopeptide repeats
THII_RS19985	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19985	SM00091	PAS domain
THII_RS19985	SM00387	Histidine kinase-like ATPases
THII_RS19985	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19985	SM00448	cheY-homologous receiver domain
THII_RS19985	SM01079	THII_RS19985
THII_RS19990	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19990	SM00091	PAS domain
THII_RS19990	SM00267	diguanylate cyclase
THII_RS19990	SM00448	cheY-homologous receiver domain
THII_RS19995	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS19995	SM00091	PAS domain
THII_RS19995	SM00387	Histidine kinase-like ATPases
THII_RS19995	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS19995	SM00448	cheY-homologous receiver domain
THII_RS20005	SM00671	Sel1-like repeats.
THII_RS20010	SM00320	WD40 repeats
THII_RS20040	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20040	SM00448	cheY-homologous receiver domain
THII_RS20045	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20045	SM00091	PAS domain
THII_RS20045	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20045	SM00387	Histidine kinase-like ATPases
THII_RS20045	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20045	SM00448	cheY-homologous receiver domain
THII_RS20055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20055	SM00387	Histidine kinase-like ATPases
THII_RS20055	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20055	SM00448	cheY-homologous receiver domain
THII_RS20075	SM00257	Lysin motif
THII_RS20100	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20100	SM00387	Histidine kinase-like ATPases
THII_RS20100	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20115	SM00052	Putative diguanylate phosphodiesterase
THII_RS20115	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20115	SM00267	diguanylate cyclase
THII_RS20120	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20120	SM00091	PAS domain
THII_RS20120	SM00387	Histidine kinase-like ATPases
THII_RS20120	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20120	SM00448	cheY-homologous receiver domain
THII_RS20135	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20135	SM00387	Histidine kinase-like ATPases
THII_RS20135	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20135	SM00448	cheY-homologous receiver domain
THII_RS20150	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20150	SM00091	PAS domain
THII_RS20150	SM00387	Histidine kinase-like ATPases
THII_RS20150	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20150	SM00448	cheY-homologous receiver domain
THII_RS20165	SM00255	Toll - interleukin 1 - resistance
THII_RS20165	SM00320	WD40 repeats
THII_RS20175	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS20190	SM00135	Low-density lipoprotein-receptor YWTD domain
THII_RS20190	SM00237	Domains in Na-Ca exchangers and integrin-beta4
THII_RS20190	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS20190	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS20195	SM00267	diguanylate cyclase
THII_RS20195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20200	SM00235	Zinc-dependent metalloprotease
THII_RS20205	SM00758	THII_RS20205
THII_RS20230	SM00945	ProQ/FINO family
THII_RS20235	SM00387	Histidine kinase-like ATPases
THII_RS20235	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20235	SM00448	cheY-homologous receiver domain
THII_RS20250	SM00028	Tetratricopeptide repeats
THII_RS20255	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20270	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS20270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20270	SM00387	Histidine kinase-like ATPases
THII_RS20270	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20270	SM00448	cheY-homologous receiver domain
THII_RS20280	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS20280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20280	SM00387	Histidine kinase-like ATPases
THII_RS20280	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20280	SM00448	cheY-homologous receiver domain
THII_RS20280	SM01358	THII_RS20280
THII_RS20285	SM00448	cheY-homologous receiver domain
THII_RS20295	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20340	SM01234	THII_RS20340
THII_RS20345	SM00320	WD40 repeats
THII_RS20355	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
THII_RS20355	SM00073	Histidine Phosphotransfer domain
THII_RS20355	SM00387	Histidine kinase-like ATPases
THII_RS20355	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20355	SM00448	cheY-homologous receiver domain
THII_RS20360	SM00382	ATPases associated with a variety of cellular activities
THII_RS20390	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20390	SM00091	PAS domain
THII_RS20390	SM00387	Histidine kinase-like ATPases
THII_RS20390	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20390	SM00448	cheY-homologous receiver domain
THII_RS20405	SM00271	DnaJ molecular chaperone homology domain
THII_RS20415	SM00073	Histidine Phosphotransfer domain
THII_RS20415	SM00091	PAS domain
THII_RS20415	SM00387	Histidine kinase-like ATPases
THII_RS20415	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20415	SM00448	cheY-homologous receiver domain
THII_RS20420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20440	SM00327	von Willebrand factor (vWF) type A domain
THII_RS20455	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THII_RS20455	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20455	SM00091	PAS domain
THII_RS20455	SM00387	Histidine kinase-like ATPases
THII_RS20455	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20455	SM00448	cheY-homologous receiver domain
THII_RS20490	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
THII_RS20490	SM00710	Parallel beta-helix repeats
THII_RS20500	SM00028	Tetratricopeptide repeats
THII_RS20560	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20560	SM00091	PAS domain
THII_RS20565	SM00052	Putative diguanylate phosphodiesterase
THII_RS20565	SM00091	PAS domain
THII_RS20565	SM00267	diguanylate cyclase
THII_RS20570	SM00387	Histidine kinase-like ATPases
THII_RS20570	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20575	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20575	SM00091	PAS domain
THII_RS20575	SM00267	diguanylate cyclase
THII_RS20585	SM00174	Rho (Ras homology) subfamily of Ras-like small GTPases
THII_RS20585	SM00175	Rab subfamily of small GTPases
THII_RS20585	SM00320	WD40 repeats
THII_RS20590	SM00267	diguanylate cyclase
THII_RS20595	SM00387	Histidine kinase-like ATPases
THII_RS20595	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20640	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20645	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS20645	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS20650	SM00091	PAS domain
THII_RS20650	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20650	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20655	SM00365	Leucine-rich repeat, SDS22-like subfamily
THII_RS20655	SM00369	Leucine-rich repeats, typical (most populated) subfamily
THII_RS20660	SM00028	Tetratricopeptide repeats
THII_RS20675	SM00255	Toll - interleukin 1 - resistance
THII_RS20685	SM00460	Transglutaminase/protease-like homologues
THII_RS20690	SM00020	Trypsin-like serine protease
THII_RS20705	SM00645	Papain family cysteine protease
THII_RS20715	SM00342	helix_turn_helix, arabinose operon control protein
THII_RS20730	SM00387	Histidine kinase-like ATPases
THII_RS20730	SM00448	cheY-homologous receiver domain
THII_RS20735	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20735	SM00091	PAS domain
THII_RS20735	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20735	SM00387	Histidine kinase-like ATPases
THII_RS20735	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20735	SM00448	cheY-homologous receiver domain
THII_RS20740	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20740	SM00091	PAS domain
THII_RS20740	SM00387	Histidine kinase-like ATPases
THII_RS20740	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20740	SM00448	cheY-homologous receiver domain
THII_RS20745	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THII_RS20780	SM00387	Histidine kinase-like ATPases
THII_RS20780	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20780	SM00448	cheY-homologous receiver domain
THII_RS20785	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20790	SM00387	Histidine kinase-like ATPases
THII_RS20790	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20825	SM00331	Sigma factor PP2C-like phosphatases
THII_RS20825	SM00387	Histidine kinase-like ATPases
THII_RS20825	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20825	SM00448	cheY-homologous receiver domain
THII_RS20850	SM00052	Putative diguanylate phosphodiesterase
THII_RS20850	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THII_RS20850	SM00091	PAS domain
THII_RS20850	SM00267	diguanylate cyclase
THII_RS20850	SM00448	cheY-homologous receiver domain
THII_RS20860	SM00387	Histidine kinase-like ATPases
THII_RS20860	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20860	SM00448	cheY-homologous receiver domain
THII_RS20875	SM00091	PAS domain
THII_RS20875	SM00387	Histidine kinase-like ATPases
THII_RS20875	SM00388	His Kinase A (phosphoacceptor) domain
THII_RS20875	SM00448	cheY-homologous receiver domain
THII_RS20890	SM00052	Putative diguanylate phosphodiesterase
THII_RS20890	SM00091	PAS domain
THII_RS20890	SM00267	diguanylate cyclase
THII_RS20900	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THII_RS20900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THII_RS20910	SM00706	Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
