LOCUS NC_038807 2564 bp DNA circular VRL 24-AUG-2018 DEFINITION Tomato golden vein virus isolate DF[BR:Ita1220:03] segment DNA-A, complete sequence. ACCESSION NC_038807 VERSION NC_038807.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Tomato golden vein virus (TGVV) ORGANISM Tomato golden vein virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. REFERENCE 1 (bases 1 to 2564) AUTHORS Albuquerque,L.C., Varsani,A., Fernandes,F.R., Pinheiro,B., Martin,D.P., de Tarso Oliveira Ferreira,P., Lemos,T.O. and Inoue-Nagata,A.K. TITLE Further characterization of tomato-infecting begomoviruses in Brazil JOURNAL Arch. Virol. 157 (4), 747-752 (2012) PUBMED 22218964 REFERENCE 2 (bases 1 to 2564) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2564) AUTHORS Albuquerque,L.C., Varsani,A., Pinheiro,B., Fernandes,F.R., Martins,D.P., Ferreira,P.T.O., Lemos,T.O. and Inoue-Nagata,A.K. TITLE Direct Submission JOURNAL Submitted (13-APR-2011) Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to JF803254. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2564 /organism="Tomato golden vein virus" /mol_type="genomic DNA" /isolate="DF[BR:Ita1220:03]" /host="Solanum lycopersicum" /db_xref="taxon:296190" /segment="DNA-A" /clone="1220" /country="Brazil: Goias" /collection_date="2003" /acronym="TGVV" gene 156..902 /locus_tag="D1S73_sAgp1" /db_xref="GeneID:37619257" CDS 156..902 /locus_tag="D1S73_sAgp1" /note="CP" /codon_start=1 /product="V1" /protein_id="YP_009508029.1" /db_xref="GeneID:37619257" /translation="MPKRDAPWRIVAGTTKVSRSSNYSPRGGIPKRDAWVNRPMYRKP RIYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRFCV KSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVK NDLRDRYQVIHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEASEVRESIPENA LLLYMACTHASNPVYATLKIRIYFYDSISN" gene complement(899..1297) /locus_tag="D1S73_sAgp2" /db_xref="GeneID:37619253" CDS complement(899..1297) /locus_tag="D1S73_sAgp2" /note="REn" /codon_start=1 /product="C3" /protein_id="YP_009508030.1" /db_xref="GeneID:37619253" /translation="MDSRTAEPITVPQAENGVFIWEITNPLYFKITNVEDPYYTTTRI YHVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGMTYLTRFRYFVLLYLNQLGIISI NNVIRAVRFATDKSYVNYVLENHSIKFKLY" gene complement(1044..1433) /locus_tag="D1S73_sAgp3" /db_xref="GeneID:37619254" CDS complement(1044..1433) /locus_tag="D1S73_sAgp3" /note="Trap" /codon_start=1 /product="C2" /protein_id="YP_009508031.1" /db_xref="GeneID:37619254" /translation="MLNSSSSTPPSIKPRHRAAKQKTTRRKRIDLNCGCSIYIHINCR NNGFTHRGTHHCASSREWRLYLGDYKSPLFQDNQRRGPLLYNDQDIPCADTFQPQPAE SVGSPQGISKFPSLDDIPESFWDDIFN" gene complement(1354..2430) /locus_tag="D1S73_sAgp4" /db_xref="GeneID:37619255" CDS complement(1354..2430) /locus_tag="D1S73_sAgp4" /note="Rep" /codon_start=1 /product="C1" /protein_id="YP_009508032.1" /db_xref="GeneID:37619255" /translation="MPPPKRFTVNAKNFFLTYPHCSLTKEETLSQLQTLKTPTNKKFI RVTREFHEDGEPHLHVLIQFEGKFKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKT YMEKDGDFIDFGNFQIDGRSARGGCQTANDTYAKVLNAENLSKALNILKEEQPRDYVL HLDKIQSHVQKIFAKAPAPWVPIFELSSFTHVPDEMQQWADEYFGRGAAARPERPISI IIEGDSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPHYLKMKHWKE LIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENASLRAWTLHNA KFIFLNSPLYQATAQSRQTENNQA" gene complement(2016..2273) /locus_tag="D1S73_sAgp5" /db_xref="GeneID:37619256" CDS complement(2016..2273) /locus_tag="D1S73_sAgp5" /codon_start=1 /product="C4" /protein_id="YP_009508033.1" /db_xref="GeneID:37619256" /translation="MGNLISMCLFNSKANSNARINGSSTWYPQQDQHISIQTFRELKA RPTSRPTWKKTETSLILEISRSMEDQQEEAAKLPMTLMRRF" ORIGIN 1 accggatggc cgcgcgattt tttaaagtgg tcccactgtg agtgaccaat cagattgtgt 61 cttggacggt tatttatttc gaaatactta ggcgctaagt tgttaaagtt gtataaatta 121 gacattcata agtggtcgac atattttaat tcaaaatgcc aaagcgagat gccccatggc 181 gtatagtggc agggaccacg aaagtatccc gctcttctaa ttattcacct cggggaggta 241 tacccaagcg ggatgcttgg gtaaacaggc ccatgtacag gaagcccagg atatatcgta 301 cgttgagagg gcctgatgtt cctaaagggt gtgaaggccc atgtaaagtt caatcctatg 361 agcaacgtca tgacatttct catcttggca aggtgatgtg tatctctgat gtgacacgtg 421 gtaatggtat tacacaccgt gttggtaagc gtttttgcgt taagtctgtg tacatattgg 481 gtaagatatg gatggacgaa aatattaaac tgaagaacca taccaacagt gttatttttt 541 ggttagtgag ggatcgtaga ccctatggga cacctatgga ttttggtcag gtgtttaaca 601 tgtttgataa tgagcctagt actgctacgg tgaagaacga tcttcgtgat cgttatcaag 661 tcattcatcg attcaatgct aaggttacgg gtggacagta tgctagcaac gagcaagctc 721 ttgttcggcg tttctggaag gtcaataatc atgtagttta taatcatcag gaagccagcg 781 aagtacgaga atccataccg gagaatgctc tgttattgta tatggcatgt acacatgcct 841 ctaatcccgt gtatgctact ttgaaaattc ggatctattt ttatgattcg atttcaaatt 901 aataaagttt aaattttatt gaatgatttt cgagtacata atttacataa gatttgtctg 961 ttgcgaaacg aacagctctg attacattgt taatggaaat aatacctaat tggttcagat 1021 acaataaaac gaaatatcta aatctagtta aatatgtcat cccagaagct ctcagggatg 1081 tcgtccagac ttggaaattt agaaatgcct tgtggagacc caacgctttc cgcaggttgt 1141 ggttgaaacg tatctgcaca tggtatatcc tggtcgttgt ataatagggg tcctcgacgt 1201 tggttatctt gaaatagagg ggatttgtaa tctcccaaat aaagacgcca ttctctgctt 1261 gaggcacagt gatgggttcc gcggtgcgtg aatccattat ttctacagtt gatgtggatg 1321 tatatggagc agccgcagtt taggtctatg cgtttacgcc tggttgtttt ctgtttggcg 1381 gctctgtgcc gtggcttgat agagggggga gttgaggaag atgaatttag cattatgcag 1441 tgtccaagct cttagagatg cattttcatg tttgtcaagg aagtctttat aactagcccc 1501 ctctcctgga ttgcaaagca cgattgatgg gatccctcct ttaatttgaa ccggctttcc 1561 gtacttgcaa ttgctttgcc agtcacgctg ggacccaatt agttctttcc agtgcttcat 1621 ttttagataa tgcggagtga catcatcaat gacgttatac tccacttcat ttgaataaac 1681 tttagaatta aaatccaagt gtccacttaa ataattatgt ggtcctagtg cacgagccca 1741 catagtcttc cccgtcctag aatcaccctc aatgatgata ctaataggtc tttccggccg 1801 cgcagcggca ccccttccga aatactcatc agcccattgc tgcatctcat caggaacgtg 1861 agtaaaggaa gataattcaa atatagggac ccatggggct ggagcctttg caaatatttt 1921 ttggacatgt gattgtattt tgtccaaatg aagaacataa tctctaggtt gttcttcttt 1981 taatatattt aaggccttgg atagattttc tgcgtttaga accttcgcat aagtgtcatt 2041 ggcagtttgg cagcctcctc ttgctgatct tccatcgatc tggaaatttc caaaatcaat 2101 gaagtctccg tctttttcca tgtaggtctt gacgtcggac gagcttttag ctccctgaat 2161 gtttggatgg aaatgtgctg atcttgttgg ggataccaag tcgaagaacc gttgattctg 2221 gcatttgaat ttgccttcga attgaataag cacatggaga tgaggttccc catcttcgtg 2281 aaattctctg gttacacgaa taaatttctt gtttgttggt gttttaagtg tctgtaattg 2341 ggaaagtgtt tcctctttgg ttaatgaaca atgagggtat gtaaggaaga aattttttgc 2401 atttacagtg aaacgctttg gtggtggcat tgtagtaaat aagaagatga gacccgatag 2461 ctctccttca aacttggcga aatgaattgg ggaatgggtc tcaatatata gtagagtcca 2521 ttatagaata taattgccac gtggcggcca tccgatataa tatt // LOCUS NC_038806 2531 bp DNA circular VRL 24-AUG-2018 DEFINITION Tomato golden vein virus isolate DF[BR:Pip1799:03] segment DNA-B, complete sequence. ACCESSION NC_038806 VERSION NC_038806.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Tomato golden vein virus (TGVV) ORGANISM Tomato golden vein virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. REFERENCE 1 (bases 1 to 2531) AUTHORS Albuquerque,L.C., Varsani,A., Fernandes,F.R., Pinheiro,B., Martin,D.P., de Tarso Oliveira Ferreira,P., Lemos,T.O. and Inoue-Nagata,A.K. TITLE Further characterization of tomato-infecting begomoviruses in Brazil JOURNAL Arch. Virol. 157 (4), 747-752 (2012) PUBMED 22218964 REFERENCE 2 (bases 1 to 2531) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2531) AUTHORS Albuquerque,L.C., Varsani,A., Pinheiro,B., Fernandes,F.R., Martins,D.P., Ferreira,P.T.O., Lemos,T.O. and Inoue-Nagata,A.K. TITLE Direct Submission JOURNAL Submitted (13-APR-2011) Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to JF803265. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2531 /organism="Tomato golden vein virus" /mol_type="genomic DNA" /isolate="DF[BR:Pip1799:03]" /host="Solanum lycopersicum" /db_xref="taxon:296190" /segment="DNA-B" /clone="B26" /country="Brazil: Distrito Federal" /collection_date="2003" /acronym="TGVV" gene 335..1105 /locus_tag="D1S73_sBgp1" /db_xref="GeneID:37619251" CDS 335..1105 /locus_tag="D1S73_sBgp1" /note="NSP" /codon_start=1 /product="BV1" /protein_id="YP_009508027.1" /db_xref="GeneID:37619251" /translation="MSPTSYRRGWSFAQRRGYSRKYLFKRPYYFKRTDGKHRSGNSNQ VNEDIKLSQQRIHENQFGPEFVMGHNTAISTFITFPSLCKTEPGRSRAYIKLKRLRFK GTVKIERVHADVTMDGIIPKIEGVFSMVVVVDRKPHLSSSGCLHTFDELFGARIHSHG NLAVTPSLKERFYIRHVWKKVISVEKDSMMVDLEGTTSLSNKRFNCWSAFKDLDRDSC NGVYANISKNALLVYYCWMSDTMSTASSFVSFDLDYVG" gene complement(1298..2179) /locus_tag="D1S73_sBgp2" /db_xref="GeneID:37619250" CDS complement(1298..2179) /locus_tag="D1S73_sBgp2" /note="MP" /codon_start=1 /product="BC1" /protein_id="YP_009508028.1" /db_xref="GeneID:37619250" /translation="MDSQVVCPPNAFNYIESRRDEYQLSHDLTEIILQFPSKATQLSA RLNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTENESLQASWTFPIRCNIDLH YFSSSFFSLKDPIPWKLYYKVSDSNVHQMTHFAKFKGKLKLSTAKHSVDIPFRAPTVK IMSKQFTVNDIDFSFVGYGKWERKLIRSASTSRFGLHGPIELNPGESWATRSTIETTQ LEAQSDLGEALHPYKDLNRLGTAILDPGDSASIIGAQRTQSNITLSMAQLNDLVRSTV QECIKSNCIPPQPKSLK" ORIGIN 1 accggatggc cgcgcgattt ttttttggtg gacccattct gaaagtaatt gagcgcattt 61 ttgacgtccg cgaattgagt tgagcgcaat atttgagttc cggaaatata gttagtggag 121 taactttaat ttgaaataaa ttacagcttt tacggtaacc aatcagcttg cgattcagga 181 gtctatttat ctattacatt tatgtcagtg tcaaggtata cggtattctt cacgtggacc 241 aattaattgt tcgctatgga gtctaactaa ttaatatatg cagtgatgat atatataaat 301 tccatatata ttgtgataga tatgatatcg catcatgtct cctactagct atagacgtgg 361 ttggtcgttt gctcaacgac gaggttattc tcgtaaatat ttgttcaaac gtccttatta 421 ttttaaacgt acagatggga aacaccgatc gggtaactct aatcaggtca atgaggatat 481 taagttgtca caacagcgta tacatgagaa ccagtttggt ccggaatttg taatgggtca 541 taatacagca atatcgactt ttattacttt tcctagtcta tgtaaaactg aaccgggcag 601 atccagggca tatattaagt tgaaacgttt acgtttcaaa ggtaccgtca agattgagcg 661 tgttcatgct gatgtgacta tggatggtat aataccaaag attgaaggcg tattttctat 721 ggttgtcgtt gttgatcgta aaccccattt gagttcatct ggttgtctgc atacatttga 781 tgagctcttt ggtgcacgga tccacagtca tggcaatttg gctgtaactc catctttgaa 841 agagcgtttt tacatacgtc acgtttggaa gaaagtaata tctgttgaga aggacagtat 901 gatggttgat cttgaaggaa cgacatcatt gagtaataag cgttttaatt gttggtctgc 961 tttcaaagat cttgatcggg attcatgtaa tggtgtttat gcgaatataa gcaagaacgc 1021 tcttttagtt tattactgtt ggatgtcgga tacgatgtct acggcgtcat catttgtatc 1081 gttcgatctt gattatgttg gttaaaaatt aaaatattaa tgtatttata cttacatgag 1141 aaaataattc atttaagaaa acgtgagaaa ataaatcatt taagaaaacg tgagaaaata 1201 aatcatttaa gaaaacgtaa tcacataata taattataat tactgaaata ttggctgcgc 1261 agctgcatgc aaaaaaaaaa tattggcaac ttgatattta tttcaatgat ttgggttgtg 1321 gaggaataca gttagattta atacattctt ggactgttga cctaacaaga tcgtttaatt 1381 gggccattga cagcgtgatg ttggattgcg ttctttgggc cccaattatt gaagccgaat 1441 cacctggatc taatatggca gttcctagcc tatttagatc tttgtatgga tgtaacgcct 1501 cccctaggtc tgattgggct tctaattggg tcgtctctat tgtactcctt gtggcccatg 1561 actctcctgg atttagttct attgggccat gaagcccaaa tctagaagtt gatgccgatc 1621 ttatcaattt tctctcccac tttccataac ctacaaaaga gaagtcgatg tcattgacgg 1681 taaattgttt ggacattatc ttcactgtgg gtgccctgaa aggtatatca accgaatgtt 1741 ttgccgttga tagcttcaat tttcctttga attttgcgaa gtgggtcatc tgatgaacgt 1801 ttgagtcaga aaccttataa tatagcttcc atggaattgg gtctttgagt gagaaaaatg 1861 atgacgagaa atagtggagg tctatgttgc acctgattgg aaaagtccat gacgcctgta 1921 aggattcatt ttcagtcatc ctcttgtcat gaatctccac aattactgat ccagttgcgt 1981 tgattggtac ctgttgtctg tattcaataa cgcaatgatc aatcttcata cagcttcgat 2041 ttagtcttgc acttaattga gttgcttttg atggaaattg caatatgatt tcggtaaggt 2101 catgggaaag ttgatattca tcacgacgag attctatata attaaaggcg ttgggtgggc 2161 aaactacttg agagtccata tgtactacaa gattgaataa gtgtagagaa taatttggaa 2221 aaagtaaagg aaacagtagt agtgatagat aagatgagtg aatggatgtg atattataca 2281 gaattgtcga tccttatata gactattaac tggttatgga taatttggtt aaacaatact 2341 gagtatactt actaaataag tttataaagt tatggtgaaa agctttgatg gtggtattta 2401 tgtaaataag gaggtgagac ccgatagctc tccttcaaac ttggcgaaat gaattgggga 2461 atgggtctca atatatagta gagtccatta tagaatataa ttgccacgtg gcggccatcc 2521 gatataatat t //