locus-tag class description TREBR_RS00005 PF00308 Bacterial dnaA protein TREBR_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix TREBR_RS00005 PF11638 DnaA N-terminal domain TREBR_RS00010 PF02767 DNA polymerase III beta subunit, central domain TREBR_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain TREBR_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain TREBR_RS00015 PF02463 RecF/RecN/SMC N terminal domain TREBR_RS00025 PF00825 Ribonuclease P TREBR_RS00030 PF01809 Putative membrane protein insertion efficiency factor TREBR_RS00035 PF14849 YidC periplasmic domain TREBR_RS00035 PF02096 60Kd inner membrane protein TREBR_RS00040 PF01424 R3H domain TREBR_RS00040 PF14804 Jag N-terminus TREBR_RS00050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TREBR_RS00080 PF00691 OmpA family TREBR_RS00080 PF13488 Glycine zipper TREBR_RS00085 PF02614 Glucuronate isomerase TREBR_RS00090 PF08666 SAF domain TREBR_RS00090 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus TREBR_RS00095 PF01232 Mannitol dehydrogenase Rossmann domain TREBR_RS00095 PF08125 Mannitol dehydrogenase C-terminal domain TREBR_RS00100 PF12833 Helix-turn-helix domain TREBR_RS00100 PF01497 Periplasmic binding protein TREBR_RS00105 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00110 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00115 PF13416 Bacterial extracellular solute-binding protein TREBR_RS00155 PF00588 SpoU rRNA Methylase family TREBR_RS00155 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREBR_RS00170 PF12850 Calcineurin-like phosphoesterase superfamily domain TREBR_RS00175 PF02082 Transcriptional regulator TREBR_RS00180 PF00282 Pyridoxal-dependent decarboxylase conserved domain TREBR_RS00185 PF00202 Aminotransferase class-III TREBR_RS00210 PF11975 Family 4 glycosyl hydrolase C-terminal domain TREBR_RS00210 PF02056 Family 4 glycosyl hydrolase TREBR_RS00220 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00225 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00230 PF12833 Helix-turn-helix domain TREBR_RS00240 PF00291 Pyridoxal-phosphate dependent enzyme TREBR_RS00260 PF00596 Class II Aldolase and Adducin N-terminal domain TREBR_RS00265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREBR_RS00265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREBR_RS00270 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREBR_RS00270 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREBR_RS00290 PF17755 UvrA DNA-binding domain TREBR_RS00290 PF17760 UvrA interaction domain TREBR_RS00295 PF02567 Phenazine biosynthesis-like protein TREBR_RS00310 PF01676 Metalloenzyme superfamily TREBR_RS00315 PF01048 Phosphorylase superfamily TREBR_RS00320 PF02872 5'-nucleotidase, C-terminal domain TREBR_RS00320 PF00149 Calcineurin-like phosphoesterase TREBR_RS00325 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS00330 PF00005 ABC transporter TREBR_RS00335 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS00340 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS00345 PF01791 DeoC/LacD family aldolase TREBR_RS00350 PF02608 ABC transporter substrate-binding protein PnrA-like TREBR_RS00355 PF13419 Haloacid dehalogenase-like hydrolase TREBR_RS00370 PF00583 Acetyltransferase (GNAT) family TREBR_RS00390 PF02371 Transposase IS116/IS110/IS902 family TREBR_RS00390 PF01548 Transposase TREBR_RS00395 PF09516 CfrBI restriction endonuclease TREBR_RS00405 PF01555 DNA methylase TREBR_RS00415 PF00005 ABC transporter TREBR_RS00435 PF01232 Mannitol dehydrogenase Rossmann domain TREBR_RS00435 PF08125 Mannitol dehydrogenase C-terminal domain TREBR_RS00440 PF03786 D-mannonate dehydratase (UxuA) TREBR_RS00445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREBR_RS00450 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TREBR_RS00455 PF03480 Bacterial extracellular solute-binding protein, family 7 TREBR_RS00460 PF08240 Alcohol dehydrogenase GroES-like domain TREBR_RS00460 PF00107 Zinc-binding dehydrogenase TREBR_RS00465 PF08240 Alcohol dehydrogenase GroES-like domain TREBR_RS00465 PF00107 Zinc-binding dehydrogenase TREBR_RS00470 PF00392 Bacterial regulatory proteins, gntR family TREBR_RS00470 PF07729 FCD domain TREBR_RS00490 PF00072 Response regulator receiver domain TREBR_RS00495 PF00072 Response regulator receiver domain TREBR_RS00495 PF01339 CheB methylesterase TREBR_RS00500 PF01739 CheR methyltransferase, SAM binding domain TREBR_RS00500 PF03705 CheR methyltransferase, all-alpha domain TREBR_RS00505 PF02895 Signal transducing histidine kinase, homodimeric domain TREBR_RS00505 PF01627 Hpt domain TREBR_RS00505 PF01584 CheW-like domain TREBR_RS00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS00515 PF01584 CheW-like domain TREBR_RS00520 PF03975 CheD chemotactic sensory transduction TREBR_RS00530 PF10609 NUBPL iron-transfer P-loop NTPase TREBR_RS00535 PF01757 Acyltransferase family TREBR_RS00545 PF00285 Citrate synthase, C-terminal domain TREBR_RS00555 PF04773 FecR protein TREBR_RS00560 PF00211 Adenylate and Guanylate cyclase catalytic domain TREBR_RS00570 PF02929 Beta galactosidase small chain TREBR_RS00570 PF02837 Glycosyl hydrolases family 2, sugar binding domain TREBR_RS00570 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TREBR_RS00570 PF00703 Glycosyl hydrolases family 2 TREBR_RS00570 PF16353 Domain of unknown function(DUF4981) TREBR_RS00575 PF02837 Glycosyl hydrolases family 2, sugar binding domain TREBR_RS00575 PF00703 Glycosyl hydrolases family 2 TREBR_RS00575 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TREBR_RS00575 PF16353 Domain of unknown function(DUF4981) TREBR_RS00575 PF02929 Beta galactosidase small chain TREBR_RS00580 PF13416 Bacterial extracellular solute-binding protein TREBR_RS00585 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00590 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00595 PF00196 Bacterial regulatory proteins, luxR family TREBR_RS00595 PF00072 Response regulator receiver domain TREBR_RS00605 PF00465 Iron-containing alcohol dehydrogenase TREBR_RS00610 PF07882 L-fucose isomerase, second N-terminal domain TREBR_RS00610 PF02952 L-fucose isomerase, C-terminal domain TREBR_RS00610 PF07881 L-fucose isomerase, first N-terminal domain TREBR_RS00615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREBR_RS00615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREBR_RS00625 PF12833 Helix-turn-helix domain TREBR_RS00625 PF02311 AraC-like ligand binding domain TREBR_RS00630 PF05025 RbsD / FucU transport protein family TREBR_RS00635 PF13407 Periplasmic binding protein domain TREBR_RS00640 PF00005 ABC transporter TREBR_RS00645 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS00650 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS00655 PF13411 MerR HTH family regulatory protein TREBR_RS00660 PF02779 Transketolase, pyrimidine binding domain TREBR_RS00660 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TREBR_RS00660 PF02780 Transketolase, C-terminal domain TREBR_RS00680 PF03313 Serine dehydratase alpha chain TREBR_RS00685 PF03466 LysR substrate binding domain TREBR_RS00685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS00690 PF00575 S1 RNA binding domain TREBR_RS00695 PF06445 GyrI-like small molecule binding domain TREBR_RS00695 PF12833 Helix-turn-helix domain TREBR_RS00715 PF01548 Transposase TREBR_RS00715 PF02371 Transposase IS116/IS110/IS902 family TREBR_RS00720 PF08378 Nuclease-related domain TREBR_RS00735 PF01554 MatE TREBR_RS00750 PF01177 Asp/Glu/Hydantoin racemase TREBR_RS00785 PF16736 Single Cache-like TREBR_RS00785 PF00989 PAS fold TREBR_RS00785 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS00785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS00795 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS00795 PF00072 Response regulator receiver domain TREBR_RS00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS00805 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS00805 PF00989 PAS fold TREBR_RS00805 PF16736 Single Cache-like TREBR_RS00810 PF00072 Response regulator receiver domain TREBR_RS00810 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS00815 PF12849 PBP superfamily domain TREBR_RS00820 PF06463 Molybdenum Cofactor Synthesis C TREBR_RS00820 PF04055 Radical SAM superfamily TREBR_RS00825 PF00440 Bacterial regulatory proteins, tetR family TREBR_RS00825 PF18665 Tetracyclin repressor-like, C-terminal domain TREBR_RS00830 PF00210 Ferritin-like domain TREBR_RS00835 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00865 PF00475 Imidazoleglycerol-phosphate dehydratase TREBR_RS00870 PF01634 ATP phosphoribosyltransferase TREBR_RS00870 PF08029 HisG, C-terminal domain TREBR_RS00915 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00920 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS00925 PF03633 Glycosyl hydrolase family 65, C-terminal domain TREBR_RS00925 PF03632 Glycosyl hydrolase family 65 central catalytic domain TREBR_RS00925 PF03636 Glycosyl hydrolase family 65, N-terminal domain TREBR_RS00935 PF13419 Haloacid dehalogenase-like hydrolase TREBR_RS00940 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS00945 PF00072 Response regulator receiver domain TREBR_RS00955 PF00672 HAMP domain TREBR_RS00955 PF00909 Ammonium Transporter Family TREBR_RS00960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS00960 PF03466 LysR substrate binding domain TREBR_RS00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS00965 PF03466 LysR substrate binding domain TREBR_RS00990 PF00248 Aldo/keto reductase family TREBR_RS01020 PF00248 Aldo/keto reductase family TREBR_RS01030 PF03781 Sulfatase-modifying factor enzyme 1 TREBR_RS01060 PF00873 AcrB/AcrD/AcrF family TREBR_RS01075 PF05193 Peptidase M16 inactive domain TREBR_RS01075 PF00675 Insulinase (Peptidase family M16) TREBR_RS01085 PF00005 ABC transporter TREBR_RS01085 PF00664 ABC transporter transmembrane region TREBR_RS01090 PF00005 ABC transporter TREBR_RS01090 PF12848 ABC transporter TREBR_RS01105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS01105 PF02743 Cache domain TREBR_RS01105 PF00672 HAMP domain TREBR_RS01115 PF01106 NifU-like domain TREBR_RS01115 PF01592 NifU-like N terminal domain TREBR_RS01115 PF04324 BFD-like [2Fe-2S] binding domain TREBR_RS01120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREBR_RS01135 PF00563 EAL domain TREBR_RS01135 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS01145 PF13732 Domain of unknown function (DUF4162) TREBR_RS01145 PF00005 ABC transporter TREBR_RS01155 PF02378 Phosphotransferase system, EIIC TREBR_RS01155 PF00367 phosphotransferase system, EIIB TREBR_RS01160 PF05524 PEP-utilising enzyme, N-terminal TREBR_RS01160 PF02896 PEP-utilising enzyme, TIM barrel domain TREBR_RS01160 PF00391 PEP-utilising enzyme, mobile domain TREBR_RS01165 PF00381 PTS HPr component phosphorylation site TREBR_RS01170 PF03123 CAT RNA binding domain TREBR_RS01170 PF00874 PRD domain TREBR_RS01175 PF00232 Glycosyl hydrolase family 1 TREBR_RS01180 PF00367 phosphotransferase system, EIIB TREBR_RS01180 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TREBR_RS01180 PF02378 Phosphotransferase system, EIIC TREBR_RS01210 PF00117 Glutamine amidotransferase class-I TREBR_RS01210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TREBR_RS01215 PF02142 MGS-like domain TREBR_RS01215 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TREBR_RS01215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TREBR_RS01230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TREBR_RS01230 PF00056 lactate/malate dehydrogenase, NAD binding domain TREBR_RS01235 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS01240 PF10396 GTP-binding protein TrmE N-terminus TREBR_RS01240 PF01926 50S ribosome-binding GTPase TREBR_RS01240 PF12631 MnmE helical domain TREBR_RS01245 PF01569 PAP2 superfamily TREBR_RS01255 PF00392 Bacterial regulatory proteins, gntR family TREBR_RS01255 PF00155 Aminotransferase class I and II TREBR_RS01260 PF02424 ApbE family TREBR_RS01265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS01265 PF00672 HAMP domain TREBR_RS01270 PF00152 tRNA synthetases class II (D, K and N) TREBR_RS01270 PF02938 GAD domain TREBR_RS01270 PF01336 OB-fold nucleic acid binding domain TREBR_RS01280 PF02659 Putative manganese efflux pump TREBR_RS01285 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS01290 PF05025 RbsD / FucU transport protein family TREBR_RS01295 PF00005 ABC transporter TREBR_RS01300 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS01305 PF13407 Periplasmic binding protein domain TREBR_RS01310 PF00294 pfkB family carbohydrate kinase TREBR_RS01315 PF08447 PAS fold TREBR_RS01315 PF13426 PAS domain TREBR_RS01315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS01320 PF04011 LemA family TREBR_RS01350 PF04073 Aminoacyl-tRNA editing domain TREBR_RS01350 PF03129 Anticodon binding domain TREBR_RS01350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREBR_RS01365 PF00266 Aminotransferase class-V TREBR_RS01370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREBR_RS01370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREBR_RS01390 PF04055 Radical SAM superfamily TREBR_RS01405 PF03275 UDP-galactopyranose mutase TREBR_RS01415 PF00535 Glycosyl transferase family 2 TREBR_RS01430 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TREBR_RS01430 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TREBR_RS01430 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TREBR_RS01440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREBR_RS01445 PF00535 Glycosyl transferase family 2 TREBR_RS01465 PF00534 Glycosyl transferases group 1 TREBR_RS01465 PF13439 Glycosyltransferase Family 4 TREBR_RS01480 PF02096 60Kd inner membrane protein TREBR_RS01510 PF17941 Polyphosphate kinase C-terminal domain 1 TREBR_RS01510 PF13090 Polyphosphate kinase C-terminal domain 2 TREBR_RS01510 PF02503 Polyphosphate kinase middle domain TREBR_RS01510 PF13089 Polyphosphate kinase N-terminal domain TREBR_RS01520 PF01204 Trehalase TREBR_RS01525 PF02934 GatB/GatE catalytic domain TREBR_RS01525 PF02637 GatB domain TREBR_RS01550 PF02308 MgtC family TREBR_RS01575 PF07475 HPr Serine kinase C-terminal domain TREBR_RS01575 PF02603 HPr Serine kinase N terminus TREBR_RS01590 PF06580 Histidine kinase TREBR_RS01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS01590 PF00672 HAMP domain TREBR_RS01590 PF02743 Cache domain TREBR_RS01600 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS01605 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS01615 PF13193 AMP-binding enzyme C-terminal domain TREBR_RS01615 PF00501 AMP-binding enzyme TREBR_RS01645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TREBR_RS01645 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREBR_RS01645 PF00037 4Fe-4S binding domain TREBR_RS01650 PF00037 4Fe-4S binding domain TREBR_RS01650 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TREBR_RS01650 PF02256 Iron hydrogenase small subunit TREBR_RS01650 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREBR_RS01660 PF04102 SlyX TREBR_RS01665 PF12683 Protein of unknown function (DUF3798) TREBR_RS01670 PF00005 ABC transporter TREBR_RS01690 PF00072 Response regulator receiver domain TREBR_RS01690 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS01695 PF11734 TilS substrate C-terminal domain TREBR_RS01695 PF09179 TilS substrate binding domain TREBR_RS01695 PF01171 PP-loop family TREBR_RS01700 PF02195 ParB-like nuclease domain TREBR_RS01710 PF00924 Mechanosensitive ion channel TREBR_RS01710 PF05552 Conserved TM helix TREBR_RS01715 PF00730 HhH-GPD superfamily base excision DNA repair protein TREBR_RS01720 PF00438 S-adenosylmethionine synthetase, N-terminal domain TREBR_RS01720 PF02773 S-adenosylmethionine synthetase, C-terminal domain TREBR_RS01720 PF02772 S-adenosylmethionine synthetase, central domain TREBR_RS01735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TREBR_RS01740 PF04055 Radical SAM superfamily TREBR_RS01740 PF13186 Iron-sulfur cluster-binding domain TREBR_RS01760 PF01555 DNA methylase TREBR_RS01765 PF09383 NIL domain TREBR_RS01765 PF00005 ABC transporter TREBR_RS01770 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS01800 PF00271 Helicase conserved C-terminal domain TREBR_RS01800 PF04851 Type III restriction enzyme, res subunit TREBR_RS01810 PF13419 Haloacid dehalogenase-like hydrolase TREBR_RS01845 PF00268 Ribonucleotide reductase, small chain TREBR_RS01850 PF00317 Ribonucleotide reductase, all-alpha domain TREBR_RS01850 PF02867 Ribonucleotide reductase, barrel domain TREBR_RS01850 PF03477 ATP cone domain TREBR_RS01855 PF16363 GDP-mannose 4,6 dehydratase TREBR_RS01860 PF04321 RmlD substrate binding domain TREBR_RS01865 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TREBR_RS01870 PF00483 Nucleotidyl transferase TREBR_RS01875 PF17762 HTH domain found in ParB protein TREBR_RS01875 PF02195 ParB-like nuclease domain TREBR_RS01880 PF13614 AAA domain TREBR_RS01935 PF06628 Catalase-related immune-responsive TREBR_RS01935 PF00199 Catalase TREBR_RS01940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TREBR_RS01940 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS01950 PF00581 Rhodanese-like domain TREBR_RS01955 PF00294 pfkB family carbohydrate kinase TREBR_RS01970 PF13686 DsrE/DsrF/DrsH-like family TREBR_RS01980 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS01990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREBR_RS01990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREBR_RS01995 PF12437 Glutamine synthetase type III N terminal TREBR_RS01995 PF00120 Glutamine synthetase, catalytic domain TREBR_RS01995 PF18318 Glutamine synthetase C-terminal domain TREBR_RS02005 PF00909 Ammonium Transporter Family TREBR_RS02010 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS02010 PF03707 Bacterial signalling protein N terminal repeat TREBR_RS02010 PF00563 EAL domain TREBR_RS02015 PF02843 Phosphoribosylglycinamide synthetase, C domain TREBR_RS02015 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TREBR_RS02015 PF02844 Phosphoribosylglycinamide synthetase, N domain TREBR_RS02045 PF04055 Radical SAM superfamily TREBR_RS02045 PF13186 Iron-sulfur cluster-binding domain TREBR_RS02070 PF12161 HsdM N-terminal domain TREBR_RS02070 PF02384 N-6 DNA Methylase TREBR_RS02080 PF01554 MatE TREBR_RS02085 PF00999 Sodium/hydrogen exchanger family TREBR_RS02090 PF01554 MatE TREBR_RS02095 PF05167 Uncharacterised ACR (DUF711) TREBR_RS02100 PF18073 Rubredoxin metal binding domain TREBR_RS02100 PF06745 KaiC TREBR_RS02110 PF00480 ROK family TREBR_RS02115 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS02120 PF01547 Bacterial extracellular solute-binding protein TREBR_RS02125 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS02130 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS02135 PF00294 pfkB family carbohydrate kinase TREBR_RS02140 PF03636 Glycosyl hydrolase family 65, N-terminal domain TREBR_RS02140 PF03632 Glycosyl hydrolase family 65 central catalytic domain TREBR_RS02140 PF03633 Glycosyl hydrolase family 65, C-terminal domain TREBR_RS02145 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS02150 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS02175 PF00672 HAMP domain TREBR_RS02175 PF00211 Adenylate and Guanylate cyclase catalytic domain TREBR_RS02180 PF03600 Citrate transporter TREBR_RS02200 PF00535 Glycosyl transferase family 2 TREBR_RS02205 PF14307 Glycosyltransferase WbsX TREBR_RS02205 PF05045 Rhamnan synthesis protein F TREBR_RS02225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREBR_RS02230 PF16363 GDP-mannose 4,6 dehydratase TREBR_RS02255 PF04552 Sigma-54, DNA binding domain TREBR_RS02255 PF00309 Sigma-54 factor, Activator interacting domain (AID) TREBR_RS02255 PF04963 Sigma-54 factor, core binding domain TREBR_RS02270 PF13335 Magnesium chelatase, subunit ChlI C-terminal TREBR_RS02270 PF01078 Magnesium chelatase, subunit ChlI TREBR_RS02275 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS02280 PF02811 PHP domain TREBR_RS02285 PF13302 Acetyltransferase (GNAT) domain TREBR_RS02285 PF00027 Cyclic nucleotide-binding domain TREBR_RS02305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS02305 PF05227 CHASE3 domain TREBR_RS02305 PF00672 HAMP domain TREBR_RS02315 PF00672 HAMP domain TREBR_RS02315 PF01966 HD domain TREBR_RS02320 PF02080 TrkA-C domain TREBR_RS02320 PF03471 Transporter associated domain TREBR_RS02320 PF00999 Sodium/hydrogen exchanger family TREBR_RS02325 PF16326 ABC transporter C-terminal domain TREBR_RS02325 PF00005 ABC transporter TREBR_RS02325 PF12848 ABC transporter TREBR_RS02330 PF00696 Amino acid kinase family TREBR_RS02335 PF03466 LysR substrate binding domain TREBR_RS02335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS02340 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TREBR_RS02340 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TREBR_RS02345 PF00890 FAD binding domain TREBR_RS02345 PF14537 Cytochrome c3 TREBR_RS02350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family TREBR_RS02350 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS02355 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS02360 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS02365 PF12010 Domain of unknown function (DUF3502) TREBR_RS02375 PF00664 ABC transporter transmembrane region TREBR_RS02375 PF00005 ABC transporter TREBR_RS02385 PF00005 ABC transporter TREBR_RS02390 PF00704 Glycosyl hydrolases family 18 TREBR_RS02390 PF01476 LysM domain TREBR_RS02405 PF03372 Endonuclease/Exonuclease/phosphatase family TREBR_RS02415 PF00113 Enolase, C-terminal TIM barrel domain TREBR_RS02415 PF03952 Enolase, N-terminal domain TREBR_RS02445 PF02511 Thymidylate synthase complementing protein TREBR_RS02460 PF00753 Metallo-beta-lactamase superfamily TREBR_RS02460 PF10996 Beta-Casp domain TREBR_RS02460 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TREBR_RS02465 PF00365 Phosphofructokinase TREBR_RS02495 PF01979 Amidohydrolase family TREBR_RS02500 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TREBR_RS02500 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TREBR_RS02505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TREBR_RS02505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TREBR_RS02510 PF00563 EAL domain TREBR_RS02510 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS02510 PF03707 Bacterial signalling protein N terminal repeat TREBR_RS02525 PF01554 MatE TREBR_RS02535 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TREBR_RS02535 PF06165 Glycosyltransferase family 36 TREBR_RS02545 PF02561 Flagellar protein FliS TREBR_RS02550 PF17862 AAA+ lid domain TREBR_RS02550 PF01434 Peptidase family M41 TREBR_RS02550 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS02555 PF01554 MatE TREBR_RS02565 PF01966 HD domain TREBR_RS02565 PF13286 Phosphohydrolase-associated domain TREBR_RS02575 PF00291 Pyridoxal-phosphate dependent enzyme TREBR_RS02590 PF02617 ATP-dependent Clp protease adaptor protein ClpS TREBR_RS02595 PF07724 AAA domain (Cdc48 subfamily) TREBR_RS02595 PF17871 AAA lid domain TREBR_RS02595 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS02595 PF02861 Clp amino terminal domain, pathogenicity island component TREBR_RS02595 PF10431 C-terminal, D2-small domain, of ClpB protein TREBR_RS02600 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TREBR_RS02610 PF04172 LrgB-like family TREBR_RS02615 PF03788 LrgA family TREBR_RS02620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TREBR_RS02620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TREBR_RS02625 PF13426 PAS domain TREBR_RS02625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS02625 PF08447 PAS fold TREBR_RS02630 PF01053 Cys/Met metabolism PLP-dependent enzyme TREBR_RS02655 PF01926 50S ribosome-binding GTPase TREBR_RS02655 PF13167 GTP-binding GTPase N-terminal TREBR_RS02655 PF16360 GTP-binding GTPase Middle Region TREBR_RS02670 PF08281 Sigma-70, region 4 TREBR_RS02670 PF04542 Sigma-70 region 2 TREBR_RS02680 PF13361 UvrD-like helicase C-terminal domain TREBR_RS02680 PF00580 UvrD/REP helicase N-terminal domain TREBR_RS02685 PF18693 TRAM domain TREBR_RS02685 PF04055 Radical SAM superfamily TREBR_RS02685 PF00919 Uncharacterized protein family UPF0004 TREBR_RS02700 PF13382 Adenine deaminase C-terminal domain TREBR_RS02700 PF01979 Amidohydrolase family TREBR_RS02705 PF07730 Histidine kinase TREBR_RS02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS02705 PF05384 Sensor protein DegS TREBR_RS02715 PF00196 Bacterial regulatory proteins, luxR family TREBR_RS02715 PF00072 Response regulator receiver domain TREBR_RS02720 PF03781 Sulfatase-modifying factor enzyme 1 TREBR_RS02740 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS02745 PF00005 ABC transporter TREBR_RS02750 PF13407 Periplasmic binding protein domain TREBR_RS02755 PF13407 Periplasmic binding protein domain TREBR_RS02760 PF00072 Response regulator receiver domain TREBR_RS02760 PF12833 Helix-turn-helix domain TREBR_RS02760 PF00072 Response regulator receiver domain TREBR_RS02760 PF12833 Helix-turn-helix domain TREBR_RS02765 PF06580 Histidine kinase TREBR_RS02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS02765 PF00672 HAMP domain TREBR_RS02765 PF02743 Cache domain TREBR_RS02775 PF06445 GyrI-like small molecule binding domain TREBR_RS02775 PF12833 Helix-turn-helix domain TREBR_RS02785 PF00005 ABC transporter TREBR_RS02785 PF12558 ATP-binding cassette cobalt transporter TREBR_RS02790 PF07155 ECF-type riboflavin transporter, S component TREBR_RS02800 PF02142 MGS-like domain TREBR_RS02800 PF01808 AICARFT/IMPCHase bienzyme TREBR_RS02805 PF00953 Glycosyl transferase family 4 TREBR_RS02810 PF08239 Bacterial SH3 domain TREBR_RS02815 PF16326 ABC transporter C-terminal domain TREBR_RS02815 PF12848 ABC transporter TREBR_RS02815 PF00005 ABC transporter TREBR_RS02825 PF16363 GDP-mannose 4,6 dehydratase TREBR_RS02830 PF01546 Peptidase family M20/M25/M40 TREBR_RS02830 PF07687 Peptidase dimerisation domain TREBR_RS02850 PF16325 Peptidase family U32 C-terminal domain TREBR_RS02850 PF01136 Peptidase family U32 TREBR_RS02855 PF00436 Single-strand binding protein family TREBR_RS02865 PF02146 Sir2 family TREBR_RS02870 PF02833 DHHA2 domain TREBR_RS02870 PF07085 DRTGG domain TREBR_RS02870 PF00571 CBS domain TREBR_RS02870 PF01368 DHH family TREBR_RS02880 PF02446 4-alpha-glucanotransferase TREBR_RS02885 PF00849 RNA pseudouridylate synthase TREBR_RS02885 PF01479 S4 domain TREBR_RS02890 PF02683 Cytochrome C biogenesis protein transmembrane region TREBR_RS02905 PF02608 ABC transporter substrate-binding protein PnrA-like TREBR_RS02910 PF00005 ABC transporter TREBR_RS02915 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS02920 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS02930 PF02743 Cache domain TREBR_RS02930 PF00672 HAMP domain TREBR_RS02930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS02940 PF01921 tRNA synthetases class I (K) TREBR_RS02945 PF00271 Helicase conserved C-terminal domain TREBR_RS02945 PF00270 DEAD/DEAH box helicase TREBR_RS03005 PF01134 Glucose inhibited division protein A TREBR_RS03005 PF13932 GidA associated domain TREBR_RS03010 PF00962 Adenosine/AMP deaminase TREBR_RS03015 PF08439 Oligopeptidase F TREBR_RS03015 PF01432 Peptidase family M3 TREBR_RS03020 PF00270 DEAD/DEAH box helicase TREBR_RS03020 PF00271 Helicase conserved C-terminal domain TREBR_RS03025 PF00691 OmpA family TREBR_RS03035 PF03707 Bacterial signalling protein N terminal repeat TREBR_RS03035 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS03035 PF00563 EAL domain TREBR_RS03040 PF13416 Bacterial extracellular solute-binding protein TREBR_RS03045 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS03050 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS03055 PF00005 ABC transporter TREBR_RS03055 PF08402 TOBE domain TREBR_RS03065 PF05437 Branched-chain amino acid transport protein (AzlD) TREBR_RS03070 PF03591 AzlC protein TREBR_RS03075 PF00128 Alpha amylase, catalytic domain TREBR_RS03085 PF03819 MazG nucleotide pyrophosphohydrolase domain TREBR_RS03090 PF01195 Peptidyl-tRNA hydrolase TREBR_RS03095 PF00574 Clp protease TREBR_RS03105 PF03880 DbpA RNA binding domain TREBR_RS03115 PF02690 Na+/Pi-cotransporter TREBR_RS03135 PF00005 ABC transporter TREBR_RS03140 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS03145 PF10458 Valyl tRNA synthetase tRNA binding arm TREBR_RS03145 PF00133 tRNA synthetases class I (I, L, M and V) TREBR_RS03145 PF08264 Anticodon-binding domain of tRNA TREBR_RS03155 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TREBR_RS03160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TREBR_RS03160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TREBR_RS03170 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS03170 PF01590 GAF domain TREBR_RS03170 PF00360 Phytochrome region TREBR_RS03170 PF00563 EAL domain TREBR_RS03180 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS03180 PF16193 AAA C-terminal domain TREBR_RS03180 PF12002 MgsA AAA+ ATPase C terminal TREBR_RS03195 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TREBR_RS03195 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TREBR_RS03200 PF02649 Type I GTP cyclohydrolase folE2 TREBR_RS03210 PF00919 Uncharacterized protein family UPF0004 TREBR_RS03210 PF04055 Radical SAM superfamily TREBR_RS03210 PF01938 TRAM domain TREBR_RS03230 PF13649 Methyltransferase domain TREBR_RS03235 PF00572 Ribosomal protein L13 TREBR_RS03240 PF00380 Ribosomal protein S9/S16 TREBR_RS03245 PF02631 RecX family TREBR_RS03250 PF00072 Response regulator receiver domain TREBR_RS03250 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS03265 PF07228 Stage II sporulation protein E (SpoIIE) TREBR_RS03265 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain TREBR_RS03270 PF01343 Peptidase family S49 TREBR_RS03285 PF16314 Domain of unknown function (DUF4954) TREBR_RS03295 PF12833 Helix-turn-helix domain TREBR_RS03295 PF02311 AraC-like ligand binding domain TREBR_RS03300 PF00701 Dihydrodipicolinate synthetase family TREBR_RS03305 PF02774 Semialdehyde dehydrogenase, dimerisation domain TREBR_RS03305 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREBR_RS03310 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TREBR_RS03310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TREBR_RS03320 PF00293 NUDIX domain TREBR_RS03320 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TREBR_RS03320 PF09297 NADH pyrophosphatase zinc ribbon domain TREBR_RS03325 PF00731 AIR carboxylase TREBR_RS03330 PF01259 SAICAR synthetase TREBR_RS03335 PF00156 Phosphoribosyl transferase domain TREBR_RS03340 PF02769 AIR synthase related protein, C-terminal domain TREBR_RS03340 PF00586 AIR synthase related protein, N-terminal domain TREBR_RS03345 PF00551 Formyl transferase TREBR_RS03350 PF02447 GntP family permease TREBR_RS03355 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TREBR_RS03360 PF17042 Nucleotide-binding C-terminal domain TREBR_RS03360 PF07005 Sugar-binding N-terminal domain TREBR_RS03365 PF00455 DeoR C terminal sensor domain TREBR_RS03365 PF08220 DeoR-like helix-turn-helix domain TREBR_RS03370 PF12631 MnmE helical domain TREBR_RS03370 PF10396 GTP-binding protein TrmE N-terminus TREBR_RS03370 PF01926 50S ribosome-binding GTPase TREBR_RS03380 PF06968 Biotin and Thiamin Synthesis associated domain TREBR_RS03380 PF04055 Radical SAM superfamily TREBR_RS03390 PF00392 Bacterial regulatory proteins, gntR family TREBR_RS03395 PF00005 ABC transporter TREBR_RS03405 PF00155 Aminotransferase class I and II TREBR_RS03415 PF00501 AMP-binding enzyme TREBR_RS03415 PF14535 AMP-binding enzyme C-terminal domain TREBR_RS03425 PF03781 Sulfatase-modifying factor enzyme 1 TREBR_RS03435 PF00310 Glutamine amidotransferases class-II TREBR_RS03440 PF01645 Conserved region in glutamate synthase TREBR_RS03440 PF13187 4Fe-4S dicluster domain TREBR_RS03450 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS03460 PF01380 SIS domain TREBR_RS03465 PF12705 PD-(D/E)XK nuclease superfamily TREBR_RS03465 PF13361 UvrD-like helicase C-terminal domain TREBR_RS03465 PF00580 UvrD/REP helicase N-terminal domain TREBR_RS03490 PF00128 Alpha amylase, catalytic domain TREBR_RS03495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TREBR_RS03495 PF00128 Alpha amylase, catalytic domain TREBR_RS03495 PF17999 Pullulanase N1-terminal domain TREBR_RS03500 PF13416 Bacterial extracellular solute-binding protein TREBR_RS03505 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS03510 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS03515 PF00128 Alpha amylase, catalytic domain TREBR_RS03515 PF11941 Domain of unknown function (DUF3459) TREBR_RS03520 PF00120 Glutamine synthetase, catalytic domain TREBR_RS03520 PF03951 Glutamine synthetase, beta-Grasp domain TREBR_RS03535 PF00733 Asparagine synthase TREBR_RS03535 PF13537 Glutamine amidotransferase domain TREBR_RS03540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TREBR_RS03540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TREBR_RS03545 PF00698 Acyl transferase domain TREBR_RS03555 PF00109 Beta-ketoacyl synthase, N-terminal domain TREBR_RS03555 PF02801 Beta-ketoacyl synthase, C-terminal domain TREBR_RS03560 PF07977 FabA-like domain TREBR_RS03580 PF13180 PDZ domain TREBR_RS03585 PF00005 ABC transporter TREBR_RS03590 PF01895 PhoU domain TREBR_RS03600 PF00005 ABC transporter TREBR_RS03610 PF01842 ACT domain TREBR_RS03610 PF00551 Formyl transferase TREBR_RS03620 PF00753 Metallo-beta-lactamase superfamily TREBR_RS03620 PF01613 Flavin reductase like domain TREBR_RS03630 PF07694 5TMR of 5TMR-LYT TREBR_RS03630 PF06580 Histidine kinase TREBR_RS03630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS03635 PF00072 Response regulator receiver domain TREBR_RS03640 PF03480 Bacterial extracellular solute-binding protein, family 7 TREBR_RS03650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREBR_RS03655 PF03480 Bacterial extracellular solute-binding protein, family 7 TREBR_RS03660 PF00013 KH domain TREBR_RS03660 PF12072 Domain of unknown function (DUF3552) TREBR_RS03660 PF01966 HD domain TREBR_RS03665 PF01739 CheR methyltransferase, SAM binding domain TREBR_RS03665 PF03705 CheR methyltransferase, all-alpha domain TREBR_RS03670 PF01339 CheB methylesterase TREBR_RS03670 PF00072 Response regulator receiver domain TREBR_RS03685 PF00348 Polyprenyl synthetase TREBR_RS03690 PF01728 FtsJ-like methyltransferase TREBR_RS03695 PF10145 Phage-related minor tail protein TREBR_RS03695 PF01464 Transglycosylase SLT domain TREBR_RS03695 PF01551 Peptidase family M23 TREBR_RS03700 PF01381 Helix-turn-helix TREBR_RS03710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREBR_RS03710 PF00205 Thiamine pyrophosphate enzyme, central domain TREBR_RS03710 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREBR_RS03715 PF05191 Adenylate kinase, active site lid TREBR_RS03725 PF01943 Polysaccharide biosynthesis protein TREBR_RS03735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREBR_RS03740 PF01820 D-ala D-ala ligase N-terminus TREBR_RS03740 PF07478 D-ala D-ala ligase C-terminus TREBR_RS03755 PF13302 Acetyltransferase (GNAT) domain TREBR_RS03785 PF00535 Glycosyl transferase family 2 TREBR_RS03810 PF00977 Histidine biosynthesis protein TREBR_RS03815 PF00117 Glutamine amidotransferase class-I TREBR_RS03825 PF00118 TCP-1/cpn60 chaperonin family TREBR_RS03830 PF00075 RNase H TREBR_RS03835 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREBR_RS03840 PF00768 D-alanyl-D-alanine carboxypeptidase TREBR_RS03840 PF07943 Penicillin-binding protein 5, C-terminal domain TREBR_RS03845 PF00920 Dehydratase family TREBR_RS03850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREBR_RS03850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREBR_RS03850 PF00205 Thiamine pyrophosphate enzyme, central domain TREBR_RS03855 PF00155 Aminotransferase class I and II TREBR_RS03870 PF01584 CheW-like domain TREBR_RS03870 PF01627 Hpt domain TREBR_RS03870 PF07194 P2 response regulator binding domain TREBR_RS03870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS03870 PF02895 Signal transducing histidine kinase, homodimeric domain TREBR_RS03875 PF01584 CheW-like domain TREBR_RS03885 PF00072 Response regulator receiver domain TREBR_RS03900 PF08207 Elongation factor P (EF-P) KOW-like domain TREBR_RS03900 PF09285 Elongation factor P, C-terminal TREBR_RS03900 PF01132 Elongation factor P (EF-P) OB domain TREBR_RS03905 PF00152 tRNA synthetases class II (D, K and N) TREBR_RS03910 PF01171 PP-loop family TREBR_RS03925 PF06071 Protein of unknown function (DUF933) TREBR_RS03925 PF01926 50S ribosome-binding GTPase TREBR_RS03955 PF04060 Putative Fe-S cluster TREBR_RS03960 PF13581 Histidine kinase-like ATPase domain TREBR_RS03980 PF03129 Anticodon binding domain TREBR_RS03980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREBR_RS03990 PF00830 Ribosomal L28 family TREBR_RS03995 PF13091 PLD-like domain TREBR_RS03995 PF13396 Phospholipase_D-nuclease N-terminal TREBR_RS04005 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TREBR_RS04005 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TREBR_RS04005 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TREBR_RS04015 PF01411 tRNA synthetases class II (A) TREBR_RS04015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREBR_RS04020 PF13145 PPIC-type PPIASE domain TREBR_RS04025 PF01029 NusB family TREBR_RS04035 PF00166 Chaperonin 10 Kd subunit TREBR_RS04040 PF00140 Sigma-70 factor, region 1.2 TREBR_RS04040 PF03979 Sigma-70 factor, region 1.1 TREBR_RS04040 PF04539 Sigma-70 region 3 TREBR_RS04040 PF04545 Sigma-70, region 4 TREBR_RS04040 PF04542 Sigma-70 region 2 TREBR_RS04045 PF00271 Helicase conserved C-terminal domain TREBR_RS04045 PF00270 DEAD/DEAH box helicase TREBR_RS04045 PF17191 RecG wedge domain TREBR_RS04050 PF02325 YGGT family TREBR_RS04055 PF02811 PHP domain TREBR_RS04055 PF14579 Helix-hairpin-helix motif TREBR_RS04055 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREBR_RS04055 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREBR_RS04060 PF09383 NIL domain TREBR_RS04060 PF00005 ABC transporter TREBR_RS04065 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS04070 PF03180 NLPA lipoprotein TREBR_RS04080 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS04080 PF00989 PAS fold TREBR_RS04080 PF16736 Single Cache-like TREBR_RS04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS04085 PF00072 Response regulator receiver domain TREBR_RS04085 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS04110 PF00483 Nucleotidyl transferase TREBR_RS04115 PF16363 GDP-mannose 4,6 dehydratase TREBR_RS04120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREBR_RS04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREBR_RS04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREBR_RS04125 PF00205 Thiamine pyrophosphate enzyme, central domain TREBR_RS04130 PF07836 DmpG-like communication domain TREBR_RS04130 PF00682 HMGL-like TREBR_RS04135 PF01761 3-dehydroquinate synthase TREBR_RS04140 PF16363 GDP-mannose 4,6 dehydratase TREBR_RS04150 PF00535 Glycosyl transferase family 2 TREBR_RS04160 PF00132 Bacterial transferase hexapeptide (six repeats) TREBR_RS04165 PF14307 Glycosyltransferase WbsX TREBR_RS04165 PF05045 Rhamnan synthesis protein F TREBR_RS04190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREBR_RS04190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREBR_RS04190 PF03129 Anticodon binding domain TREBR_RS04210 PF13472 GDSL-like Lipase/Acylhydrolase family TREBR_RS04215 PF02699 Preprotein translocase subunit TREBR_RS04220 PF02355 Protein export membrane protein TREBR_RS04225 PF02355 Protein export membrane protein TREBR_RS04230 PF02401 LytB protein TREBR_RS04235 PF04073 Aminoacyl-tRNA editing domain TREBR_RS04245 PF00162 Phosphoglycerate kinase TREBR_RS04255 PF00682 HMGL-like TREBR_RS04255 PF08502 LeuA allosteric (dimerisation) domain TREBR_RS04275 PF00464 Serine hydroxymethyltransferase TREBR_RS04280 PF00156 Phosphoribosyl transferase domain TREBR_RS04285 PF02153 Prephenate dehydrogenase TREBR_RS04290 PF18152 DAHP synthase ferredoxin-like domain TREBR_RS04290 PF00793 DAHP synthetase I family TREBR_RS04295 PF12833 Helix-turn-helix domain TREBR_RS04305 PF00005 ABC transporter TREBR_RS04305 PF17760 UvrA interaction domain TREBR_RS04305 PF17755 UvrA DNA-binding domain TREBR_RS04310 PF03968 OstA-like protein TREBR_RS04310 PF04453 LPS transport system D TREBR_RS04315 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS04315 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREBR_RS04320 PF04994 TfoX C-terminal domain TREBR_RS04320 PF04993 TfoX N-terminal domain TREBR_RS04335 PF02540 NAD synthase TREBR_RS04335 PF00795 Carbon-nitrogen hydrolase TREBR_RS04345 PF04060 Putative Fe-S cluster TREBR_RS04345 PF13187 4Fe-4S dicluster domain TREBR_RS04345 PF00037 4Fe-4S binding domain TREBR_RS04350 PF02508 Rnf-Nqr subunit, membrane protein TREBR_RS04355 PF02508 Rnf-Nqr subunit, membrane protein TREBR_RS04365 PF03116 NQR2, RnfD, RnfE family TREBR_RS04370 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREBR_RS04370 PF13237 4Fe-4S dicluster domain TREBR_RS04370 PF13375 RnfC Barrel sandwich hybrid domain TREBR_RS04370 PF10531 SLBB domain TREBR_RS04385 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS04385 PF10442 FIST C domain TREBR_RS04385 PF08495 FIST N domain TREBR_RS04385 PF00563 EAL domain TREBR_RS04390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TREBR_RS04395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS04400 PF01063 Amino-transferase class IV TREBR_RS04405 PF00691 OmpA family TREBR_RS04410 PF01476 LysM domain TREBR_RS04410 PF00877 NlpC/P60 family TREBR_RS04410 PF08239 Bacterial SH3 domain TREBR_RS04430 PF00301 Rubredoxin TREBR_RS04435 PF12704 MacB-like periplasmic core domain TREBR_RS04435 PF00005 ABC transporter TREBR_RS04435 PF02687 FtsX-like permease family TREBR_RS04440 PF00005 ABC transporter TREBR_RS04445 PF13533 Biotin-lipoyl like TREBR_RS04455 PF00117 Glutamine amidotransferase class-I TREBR_RS04455 PF06418 CTP synthase N-terminus TREBR_RS04470 PF00005 ABC transporter TREBR_RS04475 PF01814 Hemerythrin HHE cation binding domain TREBR_RS04485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS04485 PF00986 DNA gyrase B subunit, carboxyl terminus TREBR_RS04485 PF01751 Toprim domain TREBR_RS04485 PF00204 DNA gyrase B TREBR_RS04490 PF00521 DNA gyrase/topoisomerase IV, subunit A TREBR_RS04500 PF01205 Uncharacterized protein family UPF0029 TREBR_RS04500 PF09186 Domain of unknown function (DUF1949) TREBR_RS04510 PF01336 OB-fold nucleic acid binding domain TREBR_RS04510 PF00152 tRNA synthetases class II (D, K and N) TREBR_RS04525 PF01980 tRNA-methyltransferase O TREBR_RS04525 PF18389 TrmO C-terminal domain TREBR_RS04535 PF02978 Signal peptide binding domain TREBR_RS04535 PF02881 SRP54-type protein, helical bundle domain TREBR_RS04535 PF00448 SRP54-type protein, GTPase domain TREBR_RS04555 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS04570 PF07470 Glycosyl Hydrolase Family 88 TREBR_RS04575 PF03485 Arginyl tRNA synthetase N terminal domain TREBR_RS04575 PF00750 tRNA synthetases class I (R) TREBR_RS04575 PF05746 DALR anticodon binding domain TREBR_RS04585 PF00672 HAMP domain TREBR_RS04585 PF05227 CHASE3 domain TREBR_RS04585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS04595 PF00886 Ribosomal protein S16 TREBR_RS04605 PF01782 RimM N-terminal domain TREBR_RS04605 PF05239 PRC-barrel domain TREBR_RS04610 PF01746 tRNA (Guanine-1)-methyltransferase TREBR_RS04615 PF01245 Ribosomal protein L19 TREBR_RS04635 PF02021 Uncharacterised protein family UPF0102 TREBR_RS04675 PF01177 Asp/Glu/Hydantoin racemase TREBR_RS04680 PF01966 HD domain TREBR_RS04680 PF00072 Response regulator receiver domain TREBR_RS04685 PF00180 Isocitrate/isopropylmalate dehydrogenase TREBR_RS04705 PF00005 ABC transporter TREBR_RS04705 PF02687 FtsX-like permease family TREBR_RS04705 PF12704 MacB-like periplasmic core domain TREBR_RS04725 PF00005 ABC transporter TREBR_RS04740 PF00579 tRNA synthetases class I (W and Y) TREBR_RS04775 PF00672 HAMP domain TREBR_RS04775 PF01966 HD domain TREBR_RS04780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TREBR_RS04785 PF05164 Cell division protein ZapA TREBR_RS04795 PF00453 Ribosomal protein L20 TREBR_RS04800 PF01632 Ribosomal protein L35 TREBR_RS04805 PF05198 Translation initiation factor IF-3, N-terminal domain TREBR_RS04805 PF00707 Translation initiation factor IF-3, C-terminal domain TREBR_RS04815 PF01116 Fructose-bisphosphate aldolase class-II TREBR_RS04835 PF02381 MraZ protein, putative antitoxin-like TREBR_RS04840 PF01795 MraW methylase family TREBR_RS04850 PF01225 Mur ligase family, catalytic domain TREBR_RS04850 PF02875 Mur ligase family, glutamate ligase domain TREBR_RS04850 PF08245 Mur ligase middle domain TREBR_RS04855 PF01098 Cell cycle protein TREBR_RS04860 PF03799 Cell division protein FtsQ TREBR_RS04860 PF08478 POTRA domain, FtsQ-type TREBR_RS04865 PF02491 SHS2 domain inserted in FTSA TREBR_RS04870 PF12327 FtsZ family, C-terminal domain TREBR_RS04870 PF00091 Tubulin/FtsZ family, GTPase domain TREBR_RS04875 PF02899 Phage integrase, N-terminal SAM-like domain TREBR_RS04875 PF00589 Phage integrase family TREBR_RS04885 PF02481 DNA recombination-mediator protein A TREBR_RS04890 PF01751 Toprim domain TREBR_RS04890 PF01396 Topoisomerase DNA binding C4 zinc finger TREBR_RS04890 PF01131 DNA topoisomerase TREBR_RS04895 PF02899 Phage integrase, N-terminal SAM-like domain TREBR_RS04895 PF00589 Phage integrase family TREBR_RS04900 PF00227 Proteasome subunit TREBR_RS04905 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS04905 PF07724 AAA domain (Cdc48 subfamily) TREBR_RS04910 PF00460 Flagella basal body rod protein TREBR_RS04915 PF00460 Flagella basal body rod protein TREBR_RS04915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREBR_RS04920 PF02049 Flagellar hook-basal body complex protein FliE TREBR_RS04925 PF08345 Flagellar M-ring protein C-terminal TREBR_RS04925 PF01514 Secretory protein of YscJ/FliF family TREBR_RS04930 PF01706 FliG C-terminal domain TREBR_RS04930 PF14842 FliG N-terminal domain TREBR_RS04930 PF14841 FliG middle domain TREBR_RS04935 PF02108 Flagellar assembly protein FliH TREBR_RS04940 PF18269 T3SS EscN ATPase C-terminal domain TREBR_RS04940 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREBR_RS04940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREBR_RS04950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREBR_RS04950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREBR_RS04950 PF03129 Anticodon binding domain TREBR_RS04955 PF13439 Glycosyltransferase Family 4 TREBR_RS04955 PF00534 Glycosyl transferases group 1 TREBR_RS04960 PF02568 Thiamine biosynthesis protein (ThiI) TREBR_RS04960 PF02926 THUMP domain TREBR_RS04965 PF00501 AMP-binding enzyme TREBR_RS04980 PF00953 Glycosyl transferase family 4 TREBR_RS04990 PF01914 MarC family integral membrane protein TREBR_RS04995 PF14698 Argininosuccinate lyase C-terminal TREBR_RS04995 PF00206 Lyase TREBR_RS05000 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREBR_RS05005 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS05010 PF00005 ABC transporter TREBR_RS05015 PF02562 PhoH-like protein TREBR_RS05020 PF07698 7TM receptor with intracellular HD hydrolase TREBR_RS05020 PF01966 HD domain TREBR_RS05020 PF07697 7TM-HD extracellular TREBR_RS05025 PF02130 Uncharacterized protein family UPF0054 TREBR_RS05030 PF00571 CBS domain TREBR_RS05030 PF03471 Transporter associated domain TREBR_RS05055 PF00472 RF-1 domain TREBR_RS05055 PF03462 PCRF domain TREBR_RS05065 PF00448 SRP54-type protein, GTPase domain TREBR_RS05065 PF02881 SRP54-type protein, helical bundle domain TREBR_RS05075 PF02687 FtsX-like permease family TREBR_RS05075 PF12704 MacB-like periplasmic core domain TREBR_RS05080 PF00005 ABC transporter TREBR_RS05085 PF02687 FtsX-like permease family TREBR_RS05085 PF12704 MacB-like periplasmic core domain TREBR_RS05095 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain TREBR_RS05100 PF02861 Clp amino terminal domain, pathogenicity island component TREBR_RS05100 PF10431 C-terminal, D2-small domain, of ClpB protein TREBR_RS05100 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS05100 PF07724 AAA domain (Cdc48 subfamily) TREBR_RS05100 PF17871 AAA lid domain TREBR_RS05120 PF00072 Response regulator receiver domain TREBR_RS05120 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS05125 PF00672 HAMP domain TREBR_RS05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS05125 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS05135 PF02915 Rubrerythrin TREBR_RS05150 PF00872 Transposase, Mutator family TREBR_RS05155 PF00440 Bacterial regulatory proteins, tetR family TREBR_RS05155 PF17932 Tetracyclin repressor-like, C-terminal domain TREBR_RS05165 PF04463 Protein of unknown function (DUF523) TREBR_RS05170 PF12833 Helix-turn-helix domain TREBR_RS05180 PF02811 PHP domain TREBR_RS05235 PF01039 Carboxyl transferase domain TREBR_RS05255 PF01145 SPFH domain / Band 7 family TREBR_RS05260 PF01145 SPFH domain / Band 7 family TREBR_RS05265 PF00440 Bacterial regulatory proteins, tetR family TREBR_RS05270 PF00664 ABC transporter transmembrane region TREBR_RS05270 PF00005 ABC transporter TREBR_RS05270 PF04954 Siderophore-interacting protein TREBR_RS05270 PF08021 Siderophore-interacting FAD-binding domain TREBR_RS05275 PF00005 ABC transporter TREBR_RS05275 PF00664 ABC transporter transmembrane region TREBR_RS05285 PF07739 TipAS antibiotic-recognition domain TREBR_RS05285 PF13411 MerR HTH family regulatory protein TREBR_RS05315 PF06441 Epoxide hydrolase N terminus TREBR_RS05320 PF04229 GrpB protein TREBR_RS05340 PF01965 DJ-1/PfpI family TREBR_RS05345 PF08279 HTH domain TREBR_RS05345 PF13280 WYL domain TREBR_RS05355 PF13173 AAA domain TREBR_RS05355 PF13635 Domain of unknown function (DUF4143) TREBR_RS05365 PF13649 Methyltransferase domain TREBR_RS05375 PF00072 Response regulator receiver domain TREBR_RS05385 PF10609 NUBPL iron-transfer P-loop NTPase TREBR_RS05400 PF00474 Sodium:solute symporter family TREBR_RS05405 PF01588 Putative tRNA binding domain TREBR_RS05410 PF01053 Cys/Met metabolism PLP-dependent enzyme TREBR_RS05425 PF01261 Xylose isomerase-like TIM barrel TREBR_RS05455 PF00664 ABC transporter transmembrane region TREBR_RS05455 PF00005 ABC transporter TREBR_RS05455 PF03412 Peptidase C39 family TREBR_RS05480 PF13439 Glycosyltransferase Family 4 TREBR_RS05480 PF00534 Glycosyl transferases group 1 TREBR_RS05485 PF00872 Transposase, Mutator family TREBR_RS05505 PF00117 Glutamine amidotransferase class-I TREBR_RS05505 PF00958 GMP synthase C terminal domain TREBR_RS05505 PF02540 NAD synthase TREBR_RS05510 PF00117 Glutamine amidotransferase class-I TREBR_RS05510 PF06418 CTP synthase N-terminus TREBR_RS05520 PF00334 Nucleoside diphosphate kinase TREBR_RS05525 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TREBR_RS05525 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TREBR_RS05530 PF01960 ArgJ family TREBR_RS05535 PF00696 Amino acid kinase family TREBR_RS05540 PF00202 Aminotransferase class-III TREBR_RS05545 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS05550 PF13407 Periplasmic binding protein domain TREBR_RS05550 PF18610 Periplasmic binding protein domain TREBR_RS05555 PF00005 ABC transporter TREBR_RS05560 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS05565 PF01081 KDPG and KHG aldolase TREBR_RS05570 PF01022 Bacterial regulatory protein, arsR family TREBR_RS05575 PF17768 RecJ OB domain TREBR_RS05575 PF02272 DHHA1 domain TREBR_RS05575 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TREBR_RS05575 PF01368 DHH family TREBR_RS05580 PF11967 Recombination protein O N terminal TREBR_RS05580 PF02565 Recombination protein O C terminal TREBR_RS05585 PF10672 S-adenosylmethionine-dependent methyltransferase TREBR_RS05585 PF17785 PUA-like domain TREBR_RS05605 PF01026 TatD related DNase TREBR_RS05615 PF10502 Signal peptidase, peptidase S26 TREBR_RS05620 PF00041 Fibronectin type III domain TREBR_RS05620 PF00704 Glycosyl hydrolases family 18 TREBR_RS05625 PF00950 ABC 3 transport family TREBR_RS05630 PF00005 ABC transporter TREBR_RS05645 PF01425 Amidase TREBR_RS05650 PF02934 GatB/GatE catalytic domain TREBR_RS05650 PF02637 GatB domain TREBR_RS05690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREBR_RS05690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREBR_RS05695 PF14572 Phosphoribosyl synthetase-associated domain TREBR_RS05695 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TREBR_RS05700 PF00365 Phosphofructokinase TREBR_RS05705 PF03692 Putative zinc- or iron-chelating domain TREBR_RS05710 PF13180 PDZ domain TREBR_RS05715 PF12344 Ultra-violet resistance protein B TREBR_RS05715 PF17757 UvrB interaction domain TREBR_RS05715 PF00271 Helicase conserved C-terminal domain TREBR_RS05715 PF04851 Type III restriction enzyme, res subunit TREBR_RS05715 PF02151 UvrB/uvrC motif TREBR_RS05720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TREBR_RS05720 PF04324 BFD-like [2Fe-2S] binding domain TREBR_RS05720 PF18267 Rubredoxin NAD+ reductase C-terminal domain TREBR_RS05720 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS05725 PF12706 Beta-lactamase superfamily domain TREBR_RS05725 PF03099 Biotin/lipoate A/B protein ligase family TREBR_RS05730 PF00224 Pyruvate kinase, barrel domain TREBR_RS05730 PF00391 PEP-utilising enzyme, mobile domain TREBR_RS05730 PF02887 Pyruvate kinase, alpha/beta domain TREBR_RS05765 PF00583 Acetyltransferase (GNAT) family TREBR_RS05765 PF14268 YoaP-like TREBR_RS05780 PF13495 Phage integrase, N-terminal SAM-like domain TREBR_RS05780 PF00589 Phage integrase family TREBR_RS05790 PF01548 Transposase TREBR_RS05790 PF02371 Transposase IS116/IS110/IS902 family TREBR_RS05795 PF00872 Transposase, Mutator family TREBR_RS05825 PF01313 Bacterial export proteins, family 3 TREBR_RS05830 PF01311 Bacterial export proteins, family 1 TREBR_RS05835 PF01312 FlhB HrpN YscU SpaS Family TREBR_RS05840 PF00771 FHIPEP family TREBR_RS05845 PF00448 SRP54-type protein, GTPase domain TREBR_RS05850 PF10609 NUBPL iron-transfer P-loop NTPase TREBR_RS05860 PF04542 Sigma-70 region 2 TREBR_RS05860 PF04545 Sigma-70, region 4 TREBR_RS05860 PF04539 Sigma-70 region 3 TREBR_RS05895 PF03033 Glycosyltransferase family 28 N-terminal domain TREBR_RS05895 PF04101 Glycosyltransferase family 28 C-terminal domain TREBR_RS05905 PF12169 DNA polymerase III subunits gamma and tau domain III TREBR_RS05910 PF00989 PAS fold TREBR_RS05910 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS05915 PF00072 Response regulator receiver domain TREBR_RS05915 PF02954 Bacterial regulatory protein, Fis family TREBR_RS05915 PF00158 Sigma-54 interaction domain TREBR_RS05920 PF01047 MarR family TREBR_RS05940 PF01966 HD domain TREBR_RS05945 PF00330 Aconitase family (aconitate hydratase) TREBR_RS05950 PF01192 RNA polymerase Rpb6 TREBR_RS05960 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TREBR_RS05960 PF02779 Transketolase, pyrimidine binding domain TREBR_RS05960 PF02780 Transketolase, C-terminal domain TREBR_RS05965 PF00809 Pterin binding enzyme TREBR_RS05970 PF02457 DisA bacterial checkpoint controller nucleotide-binding TREBR_RS05980 PF01648 4'-phosphopantetheinyl transferase superfamily TREBR_RS05985 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) TREBR_RS05990 PF01416 tRNA pseudouridine synthase TREBR_RS05995 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TREBR_RS05995 PF18074 Primosomal protein N C-terminal domain TREBR_RS05995 PF00271 Helicase conserved C-terminal domain TREBR_RS05995 PF17764 3′ DNA-binding domain (3′BD) TREBR_RS05995 PF00270 DEAD/DEAH box helicase TREBR_RS06000 PF03167 Uracil DNA glycosylase superfamily TREBR_RS06015 PF01880 Desulfoferrodoxin TREBR_RS06020 PF01594 AI-2E family transporter TREBR_RS06025 PF02403 Seryl-tRNA synthetase N-terminal domain TREBR_RS06025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREBR_RS06030 PF04402 Protein of unknown function (DUF541) TREBR_RS06040 PF01225 Mur ligase family, catalytic domain TREBR_RS06040 PF02875 Mur ligase family, glutamate ligase domain TREBR_RS06040 PF08245 Mur ligase middle domain TREBR_RS06055 PF01263 Aldose 1-epimerase TREBR_RS06060 PF01991 ATP synthase (E/31 kDa) subunit TREBR_RS06070 PF16886 ATPsynthase alpha/beta subunit N-term extension TREBR_RS06070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREBR_RS06070 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREBR_RS06075 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREBR_RS06075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREBR_RS06080 PF01813 ATP synthase subunit D TREBR_RS06095 PF04551 GcpE protein TREBR_RS06110 PF02397 Bacterial sugar transferase TREBR_RS06130 PF03477 ATP cone domain TREBR_RS06140 PF00005 ABC transporter TREBR_RS06145 PF02632 BioY family TREBR_RS06150 PF00795 Carbon-nitrogen hydrolase TREBR_RS06155 PF10509 Galactokinase galactose-binding signature TREBR_RS06155 PF08544 GHMP kinases C terminal TREBR_RS06160 PF01975 Survival protein SurE TREBR_RS06175 PF11798 IMS family HHH motif TREBR_RS06175 PF11799 impB/mucB/samB family C-terminal domain TREBR_RS06175 PF00817 impB/mucB/samB family TREBR_RS06195 PF02390 Putative methyltransferase TREBR_RS06200 PF00533 BRCA1 C Terminus (BRCT) domain TREBR_RS06200 PF01653 NAD-dependent DNA ligase adenylation domain TREBR_RS06200 PF03120 NAD-dependent DNA ligase OB-fold domain TREBR_RS06210 PF01476 LysM domain TREBR_RS06210 PF01551 Peptidase family M23 TREBR_RS06210 PF08525 Opacity-associated protein A N-terminal motif TREBR_RS06240 PF07670 Nucleoside recognition TREBR_RS06240 PF02421 Ferrous iron transport protein B TREBR_RS06240 PF17910 FeoB cytosolic helical domain TREBR_RS06240 PF07664 Ferrous iron transport protein B C terminus TREBR_RS06250 PF00258 Flavodoxin TREBR_RS06260 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREBR_RS06275 PF01497 Periplasmic binding protein TREBR_RS06280 PF01032 FecCD transport family TREBR_RS06285 PF00005 ABC transporter TREBR_RS06290 PF00072 Response regulator receiver domain TREBR_RS06290 PF12833 Helix-turn-helix domain TREBR_RS06295 PF06580 Histidine kinase TREBR_RS06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS06295 PF02743 Cache domain TREBR_RS06295 PF00672 HAMP domain TREBR_RS06300 PF00005 ABC transporter TREBR_RS06305 PF00005 ABC transporter TREBR_RS06310 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS06325 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) TREBR_RS06325 PF12733 Cadherin-like beta sandwich domain TREBR_RS06335 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS06355 PF00440 Bacterial regulatory proteins, tetR family TREBR_RS06360 PF02535 ZIP Zinc transporter TREBR_RS06365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS06365 PF03466 LysR substrate binding domain TREBR_RS06370 PF08267 Cobalamin-independent synthase, N-terminal domain TREBR_RS06370 PF01717 Cobalamin-independent synthase, Catalytic domain TREBR_RS06375 PF02219 Methylenetetrahydrofolate reductase TREBR_RS06390 PF01297 Zinc-uptake complex component A periplasmic TREBR_RS06395 PF00005 ABC transporter TREBR_RS06400 PF00950 ABC 3 transport family TREBR_RS06410 PF00692 dUTPase TREBR_RS06425 PF01702 Queuine tRNA-ribosyltransferase TREBR_RS06435 PF01584 CheW-like domain TREBR_RS06445 PF01513 ATP-NAD kinase TREBR_RS06450 PF02463 RecF/RecN/SMC N terminal domain TREBR_RS06460 PF02608 ABC transporter substrate-binding protein PnrA-like TREBR_RS06465 PF00005 ABC transporter TREBR_RS06470 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS06475 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS06480 PF03459 TOBE domain TREBR_RS06480 PF17912 MalK OB fold domain TREBR_RS06480 PF00005 ABC transporter TREBR_RS06485 PF00773 RNB domain TREBR_RS06490 PF00144 Beta-lactamase TREBR_RS06490 PF11954 Domain of unknown function (DUF3471) TREBR_RS06515 PF00482 Type II secretion system (T2SS), protein F TREBR_RS06545 PF01554 MatE TREBR_RS06550 PF00480 ROK family TREBR_RS06560 PF04539 Sigma-70 region 3 TREBR_RS06560 PF00140 Sigma-70 factor, region 1.2 TREBR_RS06560 PF03979 Sigma-70 factor, region 1.1 TREBR_RS06560 PF04545 Sigma-70, region 4 TREBR_RS06560 PF04542 Sigma-70 region 2 TREBR_RS06565 PF00764 Arginosuccinate synthase TREBR_RS06570 PF00696 Amino acid kinase family TREBR_RS06570 PF03447 Homoserine dehydrogenase, NAD binding domain TREBR_RS06570 PF00742 Homoserine dehydrogenase TREBR_RS06570 PF01842 ACT domain TREBR_RS06570 PF13840 ACT domain TREBR_RS06575 PF18152 DAHP synthase ferredoxin-like domain TREBR_RS06575 PF00793 DAHP synthetase I family TREBR_RS06580 PF10369 Small subunit of acetolactate synthase TREBR_RS06580 PF01842 ACT domain TREBR_RS06585 PF12832 MFS_1 like family TREBR_RS06590 PF04474 Protein of unknown function (DUF554) TREBR_RS06600 PF00270 DEAD/DEAH box helicase TREBR_RS06600 PF00271 Helicase conserved C-terminal domain TREBR_RS06605 PF00005 ABC transporter TREBR_RS06605 PF12848 ABC transporter TREBR_RS06620 PF00753 Metallo-beta-lactamase superfamily TREBR_RS06620 PF12706 Beta-lactamase superfamily domain TREBR_RS06625 PF00005 ABC transporter TREBR_RS06665 PF00398 Ribosomal RNA adenine dimethylase TREBR_RS06670 PF01168 Alanine racemase, N-terminal domain TREBR_RS06680 PF00849 RNA pseudouridylate synthase TREBR_RS06695 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS06705 PF08245 Mur ligase middle domain TREBR_RS06705 PF02875 Mur ligase family, glutamate ligase domain TREBR_RS06710 PF07517 SecA DEAD-like domain TREBR_RS06710 PF01043 SecA preprotein cross-linking domain TREBR_RS06710 PF07516 SecA Wing and Scaffold domain TREBR_RS06710 PF02810 SEC-C motif TREBR_RS06730 PF00293 NUDIX domain TREBR_RS06750 PF00437 Type II/IV secretion system protein TREBR_RS06755 PF00482 Type II secretion system (T2SS), protein F TREBR_RS06820 PF00872 Transposase, Mutator family TREBR_RS06840 PF00872 Transposase, Mutator family TREBR_RS06870 PF13393 Histidyl-tRNA synthetase TREBR_RS06875 PF03309 Type III pantothenate kinase TREBR_RS06885 PF00860 Permease family TREBR_RS06895 PF00291 Pyridoxal-phosphate dependent enzyme TREBR_RS06895 PF14821 Threonine synthase N terminus TREBR_RS06905 PF01168 Alanine racemase, N-terminal domain TREBR_RS06905 PF00842 Alanine racemase, C-terminal domain TREBR_RS06940 PF03461 TRCF domain TREBR_RS06940 PF17757 UvrB interaction domain TREBR_RS06940 PF00271 Helicase conserved C-terminal domain TREBR_RS06940 PF00270 DEAD/DEAH box helicase TREBR_RS06940 PF02559 CarD-like/TRCF domain TREBR_RS06945 PF13419 Haloacid dehalogenase-like hydrolase TREBR_RS06950 PF01098 Cell cycle protein TREBR_RS06955 PF03717 Penicillin-binding Protein dimerisation domain TREBR_RS06955 PF00905 Penicillin binding protein transpeptidase domain TREBR_RS06985 PF04545 Sigma-70, region 4 TREBR_RS06985 PF04539 Sigma-70 region 3 TREBR_RS06985 PF04542 Sigma-70 region 2 TREBR_RS06985 PF00140 Sigma-70 factor, region 1.2 TREBR_RS06985 PF03979 Sigma-70 factor, region 1.1 TREBR_RS06990 PF08275 DNA primase catalytic core, N-terminal domain TREBR_RS06990 PF01807 CHC2 zinc finger TREBR_RS07005 PF00753 Metallo-beta-lactamase superfamily TREBR_RS07025 PF08323 Starch synthase catalytic domain TREBR_RS07025 PF00534 Glycosyl transferases group 1 TREBR_RS07050 PF01743 Poly A polymerase head domain TREBR_RS07050 PF12627 Probable RNA and SrmB- binding site of polymerase A TREBR_RS07050 PF13735 tRNA nucleotidyltransferase domain 2 putative TREBR_RS07055 PF00579 tRNA synthetases class I (W and Y) TREBR_RS07065 PF09334 tRNA synthetases class I (M) TREBR_RS07065 PF01588 Putative tRNA binding domain TREBR_RS07115 PF00849 RNA pseudouridylate synthase TREBR_RS07115 PF01479 S4 domain TREBR_RS07125 PF01743 Poly A polymerase head domain TREBR_RS07125 PF12626 Polymerase A arginine-rich C-terminus TREBR_RS07125 PF12627 Probable RNA and SrmB- binding site of polymerase A TREBR_RS07135 PF02926 THUMP domain TREBR_RS07135 PF10672 S-adenosylmethionine-dependent methyltransferase TREBR_RS07135 PF01170 Putative RNA methylase family UPF0020 TREBR_RS07150 PF04055 Radical SAM superfamily TREBR_RS07160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREBR_RS07160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREBR_RS07170 PF00694 Aconitase C-terminal domain TREBR_RS07175 PF00330 Aconitase family (aconitate hydratase) TREBR_RS07180 PF01641 SelR domain TREBR_RS07180 PF08534 Redoxin TREBR_RS07180 PF01625 Peptide methionine sulfoxide reductase TREBR_RS07185 PF01381 Helix-turn-helix TREBR_RS07190 PF00391 PEP-utilising enzyme, mobile domain TREBR_RS07190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TREBR_RS07190 PF02896 PEP-utilising enzyme, TIM barrel domain TREBR_RS07200 PF00270 DEAD/DEAH box helicase TREBR_RS07200 PF04408 Helicase associated domain (HA2) TREBR_RS07200 PF00271 Helicase conserved C-terminal domain TREBR_RS07200 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TREBR_RS07205 PF02254 TrkA-N domain TREBR_RS07205 PF02080 TrkA-C domain TREBR_RS07210 PF02386 Cation transport protein TREBR_RS07215 PF04055 Radical SAM superfamily TREBR_RS07220 PF10502 Signal peptidase, peptidase S26 TREBR_RS07250 PF00035 Double-stranded RNA binding motif TREBR_RS07250 PF14622 Ribonuclease-III-like TREBR_RS07255 PF00550 Phosphopantetheine attachment site TREBR_RS07260 PF01467 Cytidylyltransferase-like TREBR_RS07280 PF02545 Maf-like protein TREBR_RS07285 PF00318 Ribosomal protein S2 TREBR_RS07290 PF00889 Elongation factor TS TREBR_RS07295 PF01765 Ribosome recycling factor TREBR_RS07300 PF01255 Putative undecaprenyl diphosphate synthase TREBR_RS07310 PF13288 DXP reductoisomerase C-terminal domain TREBR_RS07310 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TREBR_RS07310 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TREBR_RS07315 PF17820 PDZ domain TREBR_RS07315 PF02163 Peptidase family M50 TREBR_RS07325 PF00772 DnaB-like helicase N terminal domain TREBR_RS07325 PF03796 DnaB-like helicase C terminal domain TREBR_RS07330 PF03948 Ribosomal protein L9, C-terminal domain TREBR_RS07330 PF01281 Ribosomal protein L9, N-terminal domain TREBR_RS07335 PF01084 Ribosomal protein S18 TREBR_RS07340 PF00436 Single-strand binding protein family TREBR_RS07345 PF01250 Ribosomal protein S6 TREBR_RS07355 PF00133 tRNA synthetases class I (I, L, M and V) TREBR_RS07355 PF08264 Anticodon-binding domain of tRNA TREBR_RS07355 PF13603 Leucyl-tRNA synthetase, Domain 2 TREBR_RS07355 PF09334 tRNA synthetases class I (M) TREBR_RS07360 PF01545 Cation efflux family TREBR_RS07360 PF16916 Dimerisation domain of Zinc Transporter TREBR_RS07400 PF04101 Glycosyltransferase family 28 C-terminal domain TREBR_RS07400 PF03033 Glycosyltransferase family 28 N-terminal domain TREBR_RS07410 PF00701 Dihydrodipicolinate synthetase family TREBR_RS07415 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS07420 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS07425 PF01547 Bacterial extracellular solute-binding protein TREBR_RS07440 PF03764 Elongation factor G, domain IV TREBR_RS07440 PF03144 Elongation factor Tu domain 2 TREBR_RS07440 PF00679 Elongation factor G C-terminus TREBR_RS07440 PF14492 Elongation Factor G, domain II TREBR_RS07440 PF00009 Elongation factor Tu GTP binding domain TREBR_RS07450 PF00664 ABC transporter transmembrane region TREBR_RS07450 PF00005 ABC transporter TREBR_RS07455 PF00664 ABC transporter transmembrane region TREBR_RS07455 PF00005 ABC transporter TREBR_RS07465 PF01165 Ribosomal protein S21 TREBR_RS07475 PF07238 PilZ domain TREBR_RS07500 PF13545 Crp-like helix-turn-helix domain TREBR_RS07500 PF00027 Cyclic nucleotide-binding domain TREBR_RS07505 PF01565 FAD binding domain TREBR_RS07505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TREBR_RS07510 PF01406 tRNA synthetases class I (C) catalytic domain TREBR_RS07510 PF09190 DALR domain TREBR_RS07515 PF04539 Sigma-70 region 3 TREBR_RS07515 PF04545 Sigma-70, region 4 TREBR_RS07515 PF04542 Sigma-70 region 2 TREBR_RS07525 PF00686 Starch binding domain TREBR_RS07525 PF02806 Alpha amylase, C-terminal all-beta domain TREBR_RS07525 PF01833 IPT/TIG domain TREBR_RS07525 PF00128 Alpha amylase, catalytic domain TREBR_RS07530 PF00696 Amino acid kinase family TREBR_RS07535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TREBR_RS07540 PF04002 RadC-like JAB domain TREBR_RS07550 PF00248 Aldo/keto reductase family TREBR_RS07555 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TREBR_RS07560 PF17871 AAA lid domain TREBR_RS07560 PF02861 Clp amino terminal domain, pathogenicity island component TREBR_RS07560 PF07724 AAA domain (Cdc48 subfamily) TREBR_RS07560 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS07560 PF10431 C-terminal, D2-small domain, of ClpB protein TREBR_RS07575 PF05193 Peptidase M16 inactive domain TREBR_RS07575 PF08367 Peptidase M16C associated TREBR_RS07575 PF00675 Insulinase (Peptidase family M16) TREBR_RS07580 PF00682 HMGL-like TREBR_RS07580 PF08502 LeuA allosteric (dimerisation) domain TREBR_RS07610 PF01330 RuvA N terminal domain TREBR_RS07615 PF05496 Holliday junction DNA helicase RuvB P-loop domain TREBR_RS07615 PF17864 RuvB AAA lid domain TREBR_RS07615 PF05491 RuvB C-terminal winged helix domain TREBR_RS07620 PF02547 Queuosine biosynthesis protein TREBR_RS07625 PF02915 Rubrerythrin TREBR_RS07630 PF01475 Ferric uptake regulator family TREBR_RS07650 PF01026 TatD related DNase TREBR_RS07670 PF02743 Cache domain TREBR_RS07670 PF00672 HAMP domain TREBR_RS07670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS07680 PF01627 Hpt domain TREBR_RS07680 PF01584 CheW-like domain TREBR_RS07680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS07680 PF01627 Hpt domain TREBR_RS07680 PF00072 Response regulator receiver domain TREBR_RS07680 PF00072 Response regulator receiver domain TREBR_RS07680 PF01584 CheW-like domain TREBR_RS07680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS07680 PF02895 Signal transducing histidine kinase, homodimeric domain TREBR_RS07680 PF02895 Signal transducing histidine kinase, homodimeric domain TREBR_RS07685 PF01739 CheR methyltransferase, SAM binding domain TREBR_RS07685 PF03705 CheR methyltransferase, all-alpha domain TREBR_RS07705 PF00684 DnaJ central domain TREBR_RS07705 PF01556 DnaJ C terminal domain TREBR_RS07705 PF00226 DnaJ domain TREBR_RS07710 PF00012 Hsp70 protein TREBR_RS07715 PF01025 GrpE TREBR_RS07725 PF03590 Aspartate-ammonia ligase TREBR_RS07730 PF13361 UvrD-like helicase C-terminal domain TREBR_RS07730 PF00580 UvrD/REP helicase N-terminal domain TREBR_RS07740 PF01938 TRAM domain TREBR_RS07740 PF05958 tRNA (Uracil-5-)-methyltransferase TREBR_RS07775 PF00534 Glycosyl transferases group 1 TREBR_RS07775 PF08323 Starch synthase catalytic domain TREBR_RS07780 PF00155 Aminotransferase class I and II TREBR_RS07790 PF01050 Mannose-6-phosphate isomerase TREBR_RS07790 PF00483 Nucleotidyl transferase TREBR_RS07795 PF08666 SAF domain TREBR_RS07795 PF03102 NeuB family TREBR_RS07800 PF01668 SmpB protein TREBR_RS07810 PF01300 Telomere recombination TREBR_RS07830 PF01973 Protein of unknown function DUF115 TREBR_RS07860 PF00133 tRNA synthetases class I (I, L, M and V) TREBR_RS07860 PF08264 Anticodon-binding domain of tRNA TREBR_RS07865 PF00730 HhH-GPD superfamily base excision DNA repair protein TREBR_RS07865 PF14815 NUDIX domain TREBR_RS07865 PF00633 Helix-hairpin-helix motif TREBR_RS07875 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS07875 PF05362 Lon protease (S16) C-terminal proteolytic domain TREBR_RS07875 PF02190 ATP-dependent protease La (LON) substrate-binding domain TREBR_RS07880 PF00069 Protein kinase domain TREBR_RS07880 PF03793 PASTA domain TREBR_RS07890 PF00498 FHA domain TREBR_RS07890 PF01061 ABC-2 type transporter TREBR_RS07890 PF00005 ABC transporter TREBR_RS07895 PF02075 Crossover junction endodeoxyribonuclease RuvC TREBR_RS07900 PF01709 Transcriptional regulator TREBR_RS07910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TREBR_RS07910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TREBR_RS07920 PF01321 Creatinase/Prolidase N-terminal domain TREBR_RS07920 PF00557 Metallopeptidase family M24 TREBR_RS07935 PF01725 Ham1 family TREBR_RS07945 PF00669 Bacterial flagellin N-terminal helical region TREBR_RS07945 PF00700 Bacterial flagellin C-terminal helical region TREBR_RS07950 PF00669 Bacterial flagellin N-terminal helical region TREBR_RS07950 PF00700 Bacterial flagellin C-terminal helical region TREBR_RS07955 PF03646 FlaG protein TREBR_RS07960 PF02465 Flagellar hook-associated protein 2 N-terminus TREBR_RS07960 PF07195 Flagellar hook-associated protein 2 C-terminus TREBR_RS07975 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TREBR_RS07980 PF00814 Glycoprotease family TREBR_RS07985 PF02278 Polysaccharide lyase family 8, super-sandwich domain TREBR_RS07985 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain TREBR_RS07985 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain TREBR_RS07995 PF02278 Polysaccharide lyase family 8, super-sandwich domain TREBR_RS07995 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain TREBR_RS07995 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain TREBR_RS08005 PF02278 Polysaccharide lyase family 8, super-sandwich domain TREBR_RS08005 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain TREBR_RS08005 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain TREBR_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS08020 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS08030 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS08030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TREBR_RS08040 PF02910 Fumarate reductase flavoprotein C-term TREBR_RS08040 PF00890 FAD binding domain TREBR_RS08055 PF02311 AraC-like ligand binding domain TREBR_RS08055 PF12833 Helix-turn-helix domain TREBR_RS08070 PF02463 RecF/RecN/SMC N terminal domain TREBR_RS08070 PF06470 SMC proteins Flexible Hinge Domain TREBR_RS08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS08085 PF03466 LysR substrate binding domain TREBR_RS08115 PF05697 Bacterial trigger factor protein (TF) TREBR_RS08115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREBR_RS08115 PF05698 Bacterial trigger factor protein (TF) C-terminus TREBR_RS08120 PF00574 Clp protease TREBR_RS08125 PF07724 AAA domain (Cdc48 subfamily) TREBR_RS08125 PF10431 C-terminal, D2-small domain, of ClpB protein TREBR_RS08125 PF06689 ClpX C4-type zinc finger TREBR_RS08135 PF00270 DEAD/DEAH box helicase TREBR_RS08135 PF00271 Helicase conserved C-terminal domain TREBR_RS08145 PF01624 MutS domain I TREBR_RS08145 PF05192 MutS domain III TREBR_RS08145 PF00488 MutS domain V TREBR_RS08145 PF05190 MutS family domain IV TREBR_RS08145 PF05188 MutS domain II TREBR_RS08155 PF01103 Surface antigen TREBR_RS08155 PF07244 Surface antigen variable number repeat TREBR_RS08165 PF02223 Thymidylate kinase TREBR_RS08175 PF01761 3-dehydroquinate synthase TREBR_RS08180 PF00266 Aminotransferase class-V TREBR_RS08200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TREBR_RS08200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TREBR_RS08200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TREBR_RS08200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TREBR_RS08205 PF00929 Exonuclease TREBR_RS08210 PF04542 Sigma-70 region 2 TREBR_RS08210 PF00140 Sigma-70 factor, region 1.2 TREBR_RS08210 PF04539 Sigma-70 region 3 TREBR_RS08210 PF04545 Sigma-70, region 4 TREBR_RS08215 PF05257 CHAP domain TREBR_RS08215 PF01476 LysM domain TREBR_RS08225 PF00813 FliP family TREBR_RS08235 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREBR_RS08240 PF02154 Flagellar motor switch protein FliM TREBR_RS08240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREBR_RS08245 PF03748 Flagellar basal body-associated protein FliL TREBR_RS08250 PF00691 OmpA family TREBR_RS08250 PF13677 Membrane MotB of proton-channel complex MotA/MotB TREBR_RS08255 PF01618 MotA/TolQ/ExbB proton channel family TREBR_RS08265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREBR_RS08265 PF00460 Flagella basal body rod protein TREBR_RS08265 PF07559 Flagellar basal body protein FlaE TREBR_RS08270 PF03963 Flagellar hook capping protein - N-terminal region TREBR_RS08280 PF06971 Putative DNA-binding protein N-terminus TREBR_RS08280 PF02629 CoA binding domain TREBR_RS08285 PF10672 S-adenosylmethionine-dependent methyltransferase TREBR_RS08300 PF01351 Ribonuclease HII TREBR_RS08320 PF00156 Phosphoribosyl transferase domain TREBR_RS08340 PF00072 Response regulator receiver domain TREBR_RS08340 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS08345 PF04962 KduI/IolB family TREBR_RS08350 PF00425 chorismate binding enzyme TREBR_RS08350 PF04715 Anthranilate synthase component I, N terminal region TREBR_RS08355 PF00117 Glutamine amidotransferase class-I TREBR_RS08355 PF00591 Glycosyl transferase family, a/b domain TREBR_RS08355 PF02885 Glycosyl transferase family, helical bundle domain TREBR_RS08360 PF00218 Indole-3-glycerol phosphate synthase TREBR_RS08365 PF00291 Pyridoxal-phosphate dependent enzyme TREBR_RS08370 PF00290 Tryptophan synthase alpha chain TREBR_RS08375 PF07691 PA14 domain TREBR_RS08375 PF02838 Glycosyl hydrolase family 20, domain 2 TREBR_RS08375 PF00728 Glycosyl hydrolase family 20, catalytic domain TREBR_RS08390 PF00958 GMP synthase C terminal domain TREBR_RS08390 PF03352 Methyladenine glycosylase TREBR_RS08390 PF00117 Glutamine amidotransferase class-I TREBR_RS08390 PF13673 Acetyltransferase (GNAT) domain TREBR_RS08390 PF13302 Acetyltransferase (GNAT) domain TREBR_RS08395 PF02719 Polysaccharide biosynthesis protein TREBR_RS08400 PF02397 Bacterial sugar transferase TREBR_RS08420 PF02502 Ribose/Galactose Isomerase TREBR_RS08425 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TREBR_RS08430 PF00155 Aminotransferase class I and II TREBR_RS08435 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase TREBR_RS08490 PF00534 Glycosyl transferases group 1 TREBR_RS08490 PF13439 Glycosyltransferase Family 4 TREBR_RS08495 PF00535 Glycosyl transferase family 2 TREBR_RS08545 PF03193 RsgA GTPase TREBR_RS08550 PF00488 MutS domain V TREBR_RS08550 PF01713 Smr domain TREBR_RS08555 PF02378 Phosphotransferase system, EIIC TREBR_RS08555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TREBR_RS08555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREBR_RS08560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TREBR_RS08575 PF01106 NifU-like domain TREBR_RS08575 PF04324 BFD-like [2Fe-2S] binding domain TREBR_RS08575 PF01592 NifU-like N terminal domain TREBR_RS08580 PF00266 Aminotransferase class-V TREBR_RS08595 PF00392 Bacterial regulatory proteins, gntR family TREBR_RS08595 PF00155 Aminotransferase class I and II TREBR_RS08600 PF09587 Bacterial capsule synthesis protein PGA_cap TREBR_RS08605 PF02690 Na+/Pi-cotransporter TREBR_RS08610 PF10397 Adenylosuccinate lyase C-terminus TREBR_RS08610 PF00206 Lyase TREBR_RS08615 PF07730 Histidine kinase TREBR_RS08615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS08620 PF00072 Response regulator receiver domain TREBR_RS08620 PF00196 Bacterial regulatory proteins, luxR family TREBR_RS08630 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS08635 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS08645 PF08402 TOBE domain TREBR_RS08645 PF00005 ABC transporter TREBR_RS08650 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS08655 PF01547 Bacterial extracellular solute-binding protein TREBR_RS08670 PF02903 Alpha amylase, N-terminal ig-like domain TREBR_RS08670 PF00128 Alpha amylase, catalytic domain TREBR_RS08670 PF16657 Maltogenic Amylase, C-terminal domain TREBR_RS08675 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TREBR_RS08680 PF00364 Biotin-requiring enzyme TREBR_RS08680 PF00682 HMGL-like TREBR_RS08680 PF02436 Conserved carboxylase domain TREBR_RS08690 PF05173 Dihydrodipicolinate reductase, C-terminus TREBR_RS08690 PF01113 Dihydrodipicolinate reductase, N-terminus TREBR_RS08695 PF01842 ACT domain TREBR_RS08695 PF00696 Amino acid kinase family TREBR_RS08700 PF00595 PDZ domain TREBR_RS08705 PF00557 Metallopeptidase family M24 TREBR_RS08710 PF01556 DnaJ C terminal domain TREBR_RS08710 PF00226 DnaJ domain TREBR_RS08725 PF01813 ATP synthase subunit D TREBR_RS08730 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREBR_RS08730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREBR_RS08735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREBR_RS08735 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREBR_RS08735 PF16886 ATPsynthase alpha/beta subunit N-term extension TREBR_RS08755 PF01496 V-type ATPase 116kDa subunit family TREBR_RS08770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREBR_RS08775 PF03840 Preprotein translocase SecG subunit TREBR_RS08780 PF00121 Triosephosphate isomerase TREBR_RS08800 PF00849 RNA pseudouridylate synthase TREBR_RS08800 PF01479 S4 domain TREBR_RS08805 PF01614 Bacterial transcriptional regulator TREBR_RS08805 PF09339 IclR helix-turn-helix domain TREBR_RS08810 PF00285 Citrate synthase, C-terminal domain TREBR_RS08815 PF00849 RNA pseudouridylate synthase TREBR_RS08815 PF01479 S4 domain TREBR_RS08825 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TREBR_RS08830 PF01430 Hsp33 protein TREBR_RS08845 PF00158 Sigma-54 interaction domain TREBR_RS08845 PF02954 Bacterial regulatory protein, Fis family TREBR_RS08845 PF00072 Response regulator receiver domain TREBR_RS08850 PF00575 S1 RNA binding domain TREBR_RS08855 PF02224 Cytidylate kinase TREBR_RS08860 PF00849 RNA pseudouridylate synthase TREBR_RS08860 PF01479 S4 domain TREBR_RS08865 PF04079 Segregation and condensation complex subunit ScpB TREBR_RS08870 PF02616 Segregation and condensation protein ScpA TREBR_RS08875 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TREBR_RS08880 PF00154 recA bacterial DNA recombination protein TREBR_RS08900 PF00834 Ribulose-phosphate 3 epimerase family TREBR_RS08915 PF14842 FliG N-terminal domain TREBR_RS08915 PF14841 FliG middle domain TREBR_RS08915 PF01706 FliG C-terminal domain TREBR_RS08920 PF17092 Penicillin-binding protein OB-like domain TREBR_RS08920 PF00905 Penicillin binding protein transpeptidase domain TREBR_RS08920 PF00912 Transglycosylase TREBR_RS08925 PF02195 ParB-like nuclease domain TREBR_RS08925 PF17762 HTH domain found in ParB protein TREBR_RS08990 PF04055 Radical SAM superfamily TREBR_RS08990 PF00919 Uncharacterized protein family UPF0004 TREBR_RS09005 PF01515 Phosphate acetyl/butaryl transferase TREBR_RS09015 PF13187 4Fe-4S dicluster domain TREBR_RS09025 PF01551 Peptidase family M23 TREBR_RS09025 PF04225 Opacity-associated protein A LysM-like domain TREBR_RS09040 PF01799 [2Fe-2S] binding domain TREBR_RS09040 PF00111 2Fe-2S iron-sulfur cluster binding domain TREBR_RS09050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREBR_RS09055 PF02719 Polysaccharide biosynthesis protein TREBR_RS09075 PF00483 Nucleotidyl transferase TREBR_RS09080 PF00892 EamA-like transporter family TREBR_RS09085 PF01554 MatE TREBR_RS09100 PF00679 Elongation factor G C-terminus TREBR_RS09100 PF14492 Elongation Factor G, domain II TREBR_RS09100 PF00009 Elongation factor Tu GTP binding domain TREBR_RS09100 PF03144 Elongation factor Tu domain 2 TREBR_RS09100 PF06421 GTP-binding protein LepA C-terminus TREBR_RS09105 PF13180 PDZ domain TREBR_RS09115 PF06480 FtsH Extracellular TREBR_RS09115 PF00004 ATPase family associated with various cellular activities (AAA) TREBR_RS09115 PF01434 Peptidase family M41 TREBR_RS09115 PF17862 AAA+ lid domain TREBR_RS09125 PF14693 Ribosomal protein TL5, C-terminal domain TREBR_RS09125 PF01386 Ribosomal L25p family TREBR_RS09135 PF04026 SpoVG TREBR_RS09140 PF08544 GHMP kinases C terminal TREBR_RS09140 PF00288 GHMP kinases N terminal domain TREBR_RS09160 PF01966 HD domain TREBR_RS09165 PF01467 Cytidylyltransferase-like TREBR_RS09170 PF01926 50S ribosome-binding GTPase TREBR_RS09170 PF01018 GTP1/OBG TREBR_RS09175 PF01016 Ribosomal L27 protein TREBR_RS09185 PF00829 Ribosomal prokaryotic L21 protein TREBR_RS09240 PF00664 ABC transporter transmembrane region TREBR_RS09240 PF00005 ABC transporter TREBR_RS09245 PF00005 ABC transporter TREBR_RS09245 PF00664 ABC transporter transmembrane region TREBR_RS09250 PF13280 WYL domain TREBR_RS09250 PF08279 HTH domain TREBR_RS09260 PF01381 Helix-turn-helix TREBR_RS09270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS09270 PF00672 HAMP domain TREBR_RS09305 PF02350 UDP-N-acetylglucosamine 2-epimerase TREBR_RS09315 PF08485 Polysaccharide biosynthesis protein C-terminal TREBR_RS09315 PF02719 Polysaccharide biosynthesis protein TREBR_RS09320 PF00872 Transposase, Mutator family TREBR_RS09325 PF08485 Polysaccharide biosynthesis protein C-terminal TREBR_RS09325 PF02719 Polysaccharide biosynthesis protein TREBR_RS09340 PF00534 Glycosyl transferases group 1 TREBR_RS09375 PF02863 Arginine repressor, C-terminal domain TREBR_RS09375 PF01316 Arginine repressor, DNA binding domain TREBR_RS09390 PF00005 ABC transporter TREBR_RS09400 PF00342 Phosphoglucose isomerase TREBR_RS09425 PF00149 Calcineurin-like phosphoesterase TREBR_RS09425 PF12320 Type 5 capsule protein repressor C-terminal domain TREBR_RS09430 PF13476 AAA domain TREBR_RS09445 PF00571 CBS domain TREBR_RS09445 PF00478 IMP dehydrogenase / GMP reductase domain TREBR_RS09450 PF00849 RNA pseudouridylate synthase TREBR_RS09455 PF00814 Glycoprotease family TREBR_RS09470 PF13307 Helicase C-terminal domain TREBR_RS09470 PF06733 DEAD_2 TREBR_RS09485 PF04620 Flagellar filament outer layer protein Flaa TREBR_RS09495 PF04122 Putative cell wall binding repeat 2 TREBR_RS09495 PF01520 N-acetylmuramoyl-L-alanine amidase TREBR_RS09500 PF02844 Phosphoribosylglycinamide synthetase, N domain TREBR_RS09500 PF02843 Phosphoribosylglycinamide synthetase, C domain TREBR_RS09500 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TREBR_RS09505 PF02348 Cytidylyltransferase TREBR_RS09520 PF00128 Alpha amylase, catalytic domain TREBR_RS09525 PF13742 OB-fold nucleic acid binding domain TREBR_RS09525 PF02601 Exonuclease VII, large subunit TREBR_RS09530 PF02609 Exonuclease VII small subunit TREBR_RS09535 PF01119 DNA mismatch repair protein, C-terminal domain TREBR_RS09535 PF08676 MutL C terminal dimerisation domain TREBR_RS09570 PF01740 STAS domain TREBR_RS09580 PF02599 Global regulator protein family TREBR_RS09585 PF02623 FliW protein TREBR_RS09590 PF00700 Bacterial flagellin C-terminal helical region TREBR_RS09590 PF00669 Bacterial flagellin N-terminal helical region TREBR_RS09595 PF07196 Flagellin hook IN motif TREBR_RS09595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREBR_RS09605 PF00403 Heavy-metal-associated domain TREBR_RS09610 PF02583 Metal-sensitive transcriptional repressor TREBR_RS09620 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREBR_RS09620 PF02774 Semialdehyde dehydrogenase, dimerisation domain TREBR_RS09625 PF00072 Response regulator receiver domain TREBR_RS09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS09660 PF01757 Acyltransferase family TREBR_RS09690 PF00535 Glycosyl transferase family 2 TREBR_RS09695 PF00534 Glycosyl transferases group 1 TREBR_RS09695 PF13439 Glycosyltransferase Family 4 TREBR_RS09720 PF01225 Mur ligase family, catalytic domain TREBR_RS09720 PF02875 Mur ligase family, glutamate ligase domain TREBR_RS09720 PF08245 Mur ligase middle domain TREBR_RS09725 PF01820 D-ala D-ala ligase N-terminus TREBR_RS09725 PF07478 D-ala D-ala ligase C-terminus TREBR_RS09730 PF02875 Mur ligase family, glutamate ligase domain TREBR_RS09730 PF08245 Mur ligase middle domain TREBR_RS09735 PF00501 AMP-binding enzyme TREBR_RS09740 PF00709 Adenylosuccinate synthetase TREBR_RS09745 PF00460 Flagella basal body rod protein TREBR_RS09745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREBR_RS09750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREBR_RS09750 PF00460 Flagella basal body rod protein TREBR_RS09760 PF00679 Elongation factor G C-terminus TREBR_RS09760 PF14492 Elongation Factor G, domain II TREBR_RS09760 PF03764 Elongation factor G, domain IV TREBR_RS09760 PF00009 Elongation factor Tu GTP binding domain TREBR_RS09760 PF03144 Elongation factor Tu domain 2 TREBR_RS09765 PF01238 Phosphomannose isomerase type I TREBR_RS09780 PF01048 Phosphorylase superfamily TREBR_RS09790 PF01145 SPFH domain / Band 7 family TREBR_RS09800 PF02417 Chromate transporter TREBR_RS09805 PF01554 MatE TREBR_RS09810 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TREBR_RS09810 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TREBR_RS09820 PF00005 ABC transporter TREBR_RS09835 PF00155 Aminotransferase class I and II TREBR_RS09850 PF00795 Carbon-nitrogen hydrolase TREBR_RS09860 PF01649 Ribosomal protein S20 TREBR_RS09865 PF01189 16S rRNA methyltransferase RsmB/F TREBR_RS09865 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TREBR_RS09865 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TREBR_RS09875 PF00933 Glycosyl hydrolase family 3 N terminal domain TREBR_RS09880 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREBR_RS09885 PF03480 Bacterial extracellular solute-binding protein, family 7 TREBR_RS09895 PF04041 beta-1,4-mannooligosaccharide phosphorylase TREBR_RS09905 PF04041 beta-1,4-mannooligosaccharide phosphorylase TREBR_RS09920 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS09925 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS09950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family TREBR_RS09950 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS09960 PF01676 Metalloenzyme superfamily TREBR_RS09960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TREBR_RS09980 PF06123 Inner membrane protein CreD TREBR_RS09985 PF01027 Inhibitor of apoptosis-promoting Bax1 TREBR_RS10000 PF00905 Penicillin binding protein transpeptidase domain TREBR_RS10000 PF03717 Penicillin-binding Protein dimerisation domain TREBR_RS10010 PF01551 Peptidase family M23 TREBR_RS10010 PF04225 Opacity-associated protein A LysM-like domain TREBR_RS10020 PF01522 Polysaccharide deacetylase TREBR_RS10025 PF01264 Chorismate synthase TREBR_RS10030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TREBR_RS10030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TREBR_RS10030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TREBR_RS10030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TREBR_RS10045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREBR_RS10050 PF02559 CarD-like/TRCF domain TREBR_RS10055 PF02542 YgbB family TREBR_RS10055 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TREBR_RS10065 PF13419 Haloacid dehalogenase-like hydrolase TREBR_RS10075 PF02472 Biopolymer transport protein ExbD/TolR TREBR_RS10080 PF01618 MotA/TolQ/ExbB proton channel family TREBR_RS10100 PF01869 BadF/BadG/BcrA/BcrD ATPase family TREBR_RS10115 PF00672 HAMP domain TREBR_RS10115 PF00211 Adenylate and Guanylate cyclase catalytic domain TREBR_RS10120 PF03023 Lipid II flippase MurJ TREBR_RS10125 PF00557 Metallopeptidase family M24 TREBR_RS10125 PF01321 Creatinase/Prolidase N-terminal domain TREBR_RS10140 PF08459 UvrC Helix-hairpin-helix N-terminal TREBR_RS10140 PF02151 UvrB/uvrC motif TREBR_RS10140 PF01541 GIY-YIG catalytic domain TREBR_RS10145 PF05193 Peptidase M16 inactive domain TREBR_RS10145 PF00675 Insulinase (Peptidase family M16) TREBR_RS10150 PF01138 3' exoribonuclease family, domain 1 TREBR_RS10150 PF00013 KH domain TREBR_RS10150 PF03725 3' exoribonuclease family, domain 2 TREBR_RS10150 PF00575 S1 RNA binding domain TREBR_RS10150 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TREBR_RS10155 PF00312 Ribosomal protein S15 TREBR_RS10165 PF01509 TruB family pseudouridylate synthase (N terminal domain) TREBR_RS10170 PF02033 Ribosome-binding factor A TREBR_RS10175 PF04760 Translation initiation factor IF-2, N-terminal region TREBR_RS10175 PF11987 Translation-initiation factor 2 TREBR_RS10175 PF00009 Elongation factor Tu GTP binding domain TREBR_RS10180 PF13184 NusA-like KH domain TREBR_RS10180 PF08529 NusA N-terminal domain TREBR_RS10180 PF00575 S1 RNA binding domain TREBR_RS10185 PF17384 RimP C-terminal SH3 domain TREBR_RS10185 PF02576 RimP N-terminal domain TREBR_RS10210 PF00872 Transposase, Mutator family TREBR_RS10250 PF00501 AMP-binding enzyme TREBR_RS10250 PF14535 AMP-binding enzyme C-terminal domain TREBR_RS10265 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TREBR_RS10265 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TREBR_RS10270 PF01048 Phosphorylase superfamily TREBR_RS10275 PF04073 Aminoacyl-tRNA editing domain TREBR_RS10285 PF13191 AAA ATPase domain TREBR_RS10285 PF00069 Protein kinase domain TREBR_RS10320 PF00005 ABC transporter TREBR_RS10320 PF09383 NIL domain TREBR_RS10375 PF00916 Sulfate permease family TREBR_RS10375 PF01740 STAS domain TREBR_RS10385 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS10390 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS10395 PF03061 Thioesterase superfamily TREBR_RS10405 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS10410 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS10415 PF01547 Bacterial extracellular solute-binding protein TREBR_RS10425 PF00480 ROK family TREBR_RS10425 PF01047 MarR family TREBR_RS10430 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TREBR_RS10435 PF01979 Amidohydrolase family TREBR_RS10440 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TREBR_RS10440 PF06165 Glycosyltransferase family 36 TREBR_RS10455 PF02080 TrkA-C domain TREBR_RS10455 PF06826 Predicted Permease Membrane Region TREBR_RS10460 PF00890 FAD binding domain TREBR_RS10460 PF02910 Fumarate reductase flavoprotein C-term TREBR_RS10470 PF00175 Oxidoreductase NAD-binding domain TREBR_RS10470 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TREBR_RS10490 PF01593 Flavin containing amine oxidoreductase TREBR_RS10505 PF10415 Fumarase C C-terminus TREBR_RS10505 PF00206 Lyase TREBR_RS10510 PF00056 lactate/malate dehydrogenase, NAD binding domain TREBR_RS10510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TREBR_RS10520 PF01022 Bacterial regulatory protein, arsR family TREBR_RS10530 PF00860 Permease family TREBR_RS10540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS10540 PF00672 HAMP domain TREBR_RS10545 PF00180 Isocitrate/isopropylmalate dehydrogenase TREBR_RS10585 PF00535 Glycosyl transferase family 2 TREBR_RS10585 PF01501 Glycosyl transferase family 8 TREBR_RS10625 PF01042 Endoribonuclease L-PSP TREBR_RS10630 PF00294 pfkB family carbohydrate kinase TREBR_RS10635 PF00749 tRNA synthetases class I (E and Q), catalytic domain TREBR_RS10645 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS10650 PF00005 ABC transporter TREBR_RS10660 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS10670 PF00403 Heavy-metal-associated domain TREBR_RS10675 PF01022 Bacterial regulatory protein, arsR family TREBR_RS10685 PF03144 Elongation factor Tu domain 2 TREBR_RS10685 PF03764 Elongation factor G, domain IV TREBR_RS10685 PF14492 Elongation Factor G, domain II TREBR_RS10685 PF00679 Elongation factor G C-terminus TREBR_RS10685 PF00009 Elongation factor Tu GTP binding domain TREBR_RS10700 PF01121 Dephospho-CoA kinase TREBR_RS10705 PF01367 5'-3' exonuclease, C-terminal SAM fold TREBR_RS10705 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TREBR_RS10705 PF00476 DNA polymerase family A TREBR_RS10705 PF01612 3'-5' exonuclease TREBR_RS10740 PF00871 Acetokinase family TREBR_RS10745 PF00294 pfkB family carbohydrate kinase TREBR_RS10755 PF00486 Transcriptional regulatory protein, C terminal TREBR_RS10755 PF00072 Response regulator receiver domain TREBR_RS10760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREBR_RS10760 PF00072 Response regulator receiver domain TREBR_RS10760 PF00672 HAMP domain TREBR_RS10760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS10760 PF01627 Hpt domain TREBR_RS10760 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS10775 PF01176 Translation initiation factor 1A / IF-1 TREBR_RS10780 PF00226 DnaJ domain TREBR_RS10780 PF00684 DnaJ central domain TREBR_RS10780 PF01556 DnaJ C terminal domain TREBR_RS10800 PF00092 von Willebrand factor type A domain TREBR_RS10810 PF01882 Protein of unknown function DUF58 TREBR_RS10815 PF07726 ATPase family associated with various cellular activities (AAA) TREBR_RS10815 PF17863 AAA lid domain TREBR_RS10835 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain TREBR_RS10835 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain TREBR_RS10850 PF01197 Ribosomal protein L31 TREBR_RS10855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREBR_RS10855 PF07498 Rho termination factor, N-terminal domain TREBR_RS10855 PF07497 Rho termination factor, RNA-binding domain TREBR_RS10870 PF18125 RlmM ferredoxin-like domain TREBR_RS10870 PF01728 FtsJ-like methyltransferase TREBR_RS10875 PF04204 Homoserine O-succinyltransferase TREBR_RS10880 PF07859 alpha/beta hydrolase fold TREBR_RS10885 PF16325 Peptidase family U32 C-terminal domain TREBR_RS10885 PF01136 Peptidase family U32 TREBR_RS10890 PF13291 ACT domain TREBR_RS10890 PF04607 Region found in RelA / SpoT proteins TREBR_RS10890 PF02824 TGS domain TREBR_RS10895 PF05175 Methyltransferase small domain TREBR_RS10895 PF17827 PrmC N-terminal domain TREBR_RS10900 PF00472 RF-1 domain TREBR_RS10900 PF03462 PCRF domain TREBR_RS10910 PF06100 MCRA family TREBR_RS10915 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TREBR_RS10955 PF01066 CDP-alcohol phosphatidyltransferase TREBR_RS10970 PF00293 NUDIX domain TREBR_RS10985 PF02229 Transcriptional Coactivator p15 (PC4) TREBR_RS10995 PF01726 LexA DNA binding domain TREBR_RS10995 PF00717 Peptidase S24-like TREBR_RS11000 PF00381 PTS HPr component phosphorylation site TREBR_RS11005 PF02603 HPr Serine kinase N terminus TREBR_RS11005 PF07475 HPr Serine kinase C-terminal domain TREBR_RS11020 PF00849 RNA pseudouridylate synthase TREBR_RS11020 PF01479 S4 domain TREBR_RS11025 PF01595 Cyclin M transmembrane N-terminal domain TREBR_RS11025 PF03471 Transporter associated domain TREBR_RS11025 PF00571 CBS domain TREBR_RS11030 PF01595 Cyclin M transmembrane N-terminal domain TREBR_RS11030 PF03471 Transporter associated domain TREBR_RS11030 PF00571 CBS domain TREBR_RS11040 PF02769 AIR synthase related protein, C-terminal domain TREBR_RS11040 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TREBR_RS11040 PF00586 AIR synthase related protein, N-terminal domain TREBR_RS11045 PF00472 RF-1 domain TREBR_RS11045 PF03462 PCRF domain TREBR_RS11060 PF01037 Lrp/AsnC ligand binding domain TREBR_RS11065 PF00155 Aminotransferase class I and II TREBR_RS11075 PF00005 ABC transporter TREBR_RS11080 PF13344 Haloacid dehalogenase-like hydrolase TREBR_RS11080 PF00293 NUDIX domain TREBR_RS11085 PF01699 Sodium/calcium exchanger protein TREBR_RS11095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TREBR_RS11100 PF00005 ABC transporter TREBR_RS11105 PF12704 MacB-like periplasmic core domain TREBR_RS11105 PF02687 FtsX-like permease family TREBR_RS11110 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TREBR_RS11110 PF07055 Enoyl reductase FAD binding domain TREBR_RS11110 PF12241 Trans-2-enoyl-CoA reductase catalytic region TREBR_RS11115 PF02801 Beta-ketoacyl synthase, C-terminal domain TREBR_RS11115 PF00109 Beta-ketoacyl synthase, N-terminal domain TREBR_RS11120 PF13193 AMP-binding enzyme C-terminal domain TREBR_RS11120 PF00501 AMP-binding enzyme TREBR_RS11125 PF00085 Thioredoxin TREBR_RS11155 PF01554 MatE TREBR_RS11170 PF03480 Bacterial extracellular solute-binding protein, family 7 TREBR_RS11180 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREBR_RS11195 PF00005 ABC transporter TREBR_RS11215 PF09827 CRISPR associated protein Cas2 TREBR_RS11220 PF01867 CRISPR associated protein Cas1 TREBR_RS11250 PF00872 Transposase, Mutator family TREBR_RS11290 PF03807 NADP oxidoreductase coenzyme F420-dependent TREBR_RS11290 PF14748 Pyrroline-5-carboxylate reductase dimerisation TREBR_RS11295 PF00696 Amino acid kinase family TREBR_RS11300 PF00171 Aldehyde dehydrogenase family TREBR_RS11310 PF01327 Polypeptide deformylase TREBR_RS11315 PF00551 Formyl transferase TREBR_RS11315 PF02911 Formyl transferase, C-terminal domain TREBR_RS11325 PF03553 Na+/H+ antiporter family TREBR_RS11335 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TREBR_RS11335 PF08501 Shikimate dehydrogenase substrate binding domain TREBR_RS11340 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TREBR_RS11350 PF07650 KH domain TREBR_RS11350 PF01926 50S ribosome-binding GTPase TREBR_RS11355 PF00128 Alpha amylase, catalytic domain TREBR_RS11355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TREBR_RS11360 PF00343 Carbohydrate phosphorylase TREBR_RS11370 PF00474 Sodium:solute symporter family TREBR_RS11375 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS11375 PF00563 EAL domain TREBR_RS11375 PF03707 Bacterial signalling protein N terminal repeat TREBR_RS11385 PF00933 Glycosyl hydrolase family 3 N terminal domain TREBR_RS11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS11425 PF03773 Predicted permease TREBR_RS11435 PF12146 Serine aminopeptidase, S33 TREBR_RS11450 PF00266 Aminotransferase class-V TREBR_RS11455 PF01842 ACT domain TREBR_RS11455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREBR_RS11455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREBR_RS11470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREBR_RS11470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TREBR_RS11500 PF01370 NAD dependent epimerase/dehydratase family TREBR_RS11505 PF16363 GDP-mannose 4,6 dehydratase TREBR_RS11510 PF01370 NAD dependent epimerase/dehydratase family TREBR_RS11515 PF00535 Glycosyl transferase family 2 TREBR_RS11520 PF00535 Glycosyl transferase family 2 TREBR_RS11535 PF00872 Transposase, Mutator family TREBR_RS11560 PF02446 4-alpha-glucanotransferase TREBR_RS11570 PF00291 Pyridoxal-phosphate dependent enzyme TREBR_RS11570 PF14821 Threonine synthase N terminus TREBR_RS11580 PF01546 Peptidase family M20/M25/M40 TREBR_RS11580 PF07687 Peptidase dimerisation domain TREBR_RS11590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TREBR_RS11620 PF00588 SpoU rRNA Methylase family TREBR_RS11635 PF04452 RNA methyltransferase TREBR_RS11640 PF13180 PDZ domain TREBR_RS11640 PF03572 Peptidase family S41 TREBR_RS11650 PF10609 NUBPL iron-transfer P-loop NTPase TREBR_RS11655 PF01790 Prolipoprotein diacylglyceryl transferase TREBR_RS11660 PF00456 Transketolase, thiamine diphosphate binding domain TREBR_RS11660 PF02779 Transketolase, pyrimidine binding domain TREBR_RS11675 PF00011 Hsp20/alpha crystallin family TREBR_RS11680 PF00478 IMP dehydrogenase / GMP reductase domain TREBR_RS11680 PF00571 CBS domain TREBR_RS11685 PF00005 ABC transporter TREBR_RS11690 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREBR_RS11690 PF00005 ABC transporter TREBR_RS11695 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS11695 PF11862 Domain of unknown function (DUF3382) TREBR_RS11700 PF02653 Branched-chain amino acid transport system / permease component TREBR_RS11705 PF13458 Periplasmic binding protein TREBR_RS11710 PF01196 Ribosomal protein L17 TREBR_RS11715 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TREBR_RS11715 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TREBR_RS11715 PF01000 RNA polymerase Rpb3/RpoA insert domain TREBR_RS11720 PF01479 S4 domain TREBR_RS11720 PF00163 Ribosomal protein S4/S9 N-terminal domain TREBR_RS11725 PF00411 Ribosomal protein S11 TREBR_RS11730 PF00416 Ribosomal protein S13/S18 TREBR_RS11735 PF00344 SecY translocase TREBR_RS11740 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TREBR_RS11745 PF00327 Ribosomal protein L30p/L7e TREBR_RS11750 PF00333 Ribosomal protein S5, N-terminal domain TREBR_RS11750 PF03719 Ribosomal protein S5, C-terminal domain TREBR_RS11755 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TREBR_RS11760 PF00347 Ribosomal protein L6 TREBR_RS11765 PF00410 Ribosomal protein S8 TREBR_RS11770 PF00281 Ribosomal protein L5 TREBR_RS11770 PF00673 ribosomal L5P family C-terminus TREBR_RS11775 PF00467 KOW motif TREBR_RS11775 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TREBR_RS11780 PF00238 Ribosomal protein L14p/L23e TREBR_RS11785 PF00366 Ribosomal protein S17 TREBR_RS11790 PF00831 Ribosomal L29 protein TREBR_RS11795 PF00252 Ribosomal protein L16p/L10e TREBR_RS11800 PF07650 KH domain TREBR_RS11800 PF00189 Ribosomal protein S3, C-terminal domain TREBR_RS11805 PF00237 Ribosomal protein L22p/L17e TREBR_RS11810 PF00203 Ribosomal protein S19 TREBR_RS11815 PF00181 Ribosomal Proteins L2, RNA binding domain TREBR_RS11815 PF03947 Ribosomal Proteins L2, C-terminal domain TREBR_RS11820 PF00276 Ribosomal protein L23 TREBR_RS11825 PF00573 Ribosomal protein L4/L1 family TREBR_RS11830 PF00297 Ribosomal protein L3 TREBR_RS11835 PF00338 Ribosomal protein S10p/S20e TREBR_RS11840 PF03143 Elongation factor Tu C-terminal domain TREBR_RS11840 PF03144 Elongation factor Tu domain 2 TREBR_RS11840 PF00009 Elongation factor Tu GTP binding domain TREBR_RS11845 PF00177 Ribosomal protein S7p/S5e TREBR_RS11850 PF00164 Ribosomal protein S12/S23 TREBR_RS11855 PF04983 RNA polymerase Rpb1, domain 3 TREBR_RS11855 PF04998 RNA polymerase Rpb1, domain 5 TREBR_RS11855 PF04997 RNA polymerase Rpb1, domain 1 TREBR_RS11855 PF00623 RNA polymerase Rpb1, domain 2 TREBR_RS11855 PF05000 RNA polymerase Rpb1, domain 4 TREBR_RS11860 PF04563 RNA polymerase beta subunit TREBR_RS11860 PF04561 RNA polymerase Rpb2, domain 2 TREBR_RS11860 PF04565 RNA polymerase Rpb2, domain 3 TREBR_RS11860 PF10385 RNA polymerase beta subunit external 1 domain TREBR_RS11860 PF00562 RNA polymerase Rpb2, domain 6 TREBR_RS11860 PF04560 RNA polymerase Rpb2, domain 7 TREBR_RS11865 PF00542 Ribosomal protein L7/L12 C-terminal domain TREBR_RS11865 PF16320 Ribosomal protein L7/L12 dimerisation domain TREBR_RS11870 PF00466 Ribosomal protein L10 TREBR_RS11875 PF00687 Ribosomal protein L1p/L10e family TREBR_RS11880 PF03946 Ribosomal protein L11, N-terminal domain TREBR_RS11880 PF00298 Ribosomal protein L11, RNA binding domain TREBR_RS11885 PF00467 KOW motif TREBR_RS11885 PF02357 Transcription termination factor nusG TREBR_RS11890 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TREBR_RS11900 PF00471 Ribosomal protein L33 TREBR_RS11910 PF00132 Bacterial transferase hexapeptide (six repeats) TREBR_RS11940 PF11953 Domain of unknown function (DUF3470) TREBR_RS11940 PF00037 4Fe-4S binding domain TREBR_RS11945 PF17854 FtsK alpha domain TREBR_RS11945 PF09397 Ftsk gamma domain TREBR_RS11945 PF01580 FtsK/SpoIIIE family TREBR_RS11970 PF00933 Glycosyl hydrolase family 3 N terminal domain TREBR_RS11970 PF14310 Fibronectin type III-like domain TREBR_RS11970 PF01915 Glycosyl hydrolase family 3 C-terminal domain TREBR_RS11980 PF10417 C-terminal domain of 1-Cys peroxiredoxin TREBR_RS11980 PF00578 AhpC/TSA family TREBR_RS11985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TREBR_RS11985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TREBR_RS11995 PF00970 Oxidoreductase FAD-binding domain TREBR_RS11995 PF00175 Oxidoreductase NAD-binding domain TREBR_RS11995 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TREBR_RS12000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREBR_RS12000 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS12010 PF00501 AMP-binding enzyme TREBR_RS12015 PF01409 tRNA synthetases class II core domain (F) TREBR_RS12035 PF00563 EAL domain TREBR_RS12035 PF01590 GAF domain TREBR_RS12035 PF00360 Phytochrome region TREBR_RS12035 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS12045 PF00072 Response regulator receiver domain TREBR_RS12045 PF00211 Adenylate and Guanylate cyclase catalytic domain TREBR_RS12075 PF01207 Dihydrouridine synthase (Dus) TREBR_RS12080 PF01026 TatD related DNase TREBR_RS12085 PF04225 Opacity-associated protein A LysM-like domain TREBR_RS12085 PF01551 Peptidase family M23 TREBR_RS12100 PF04468 PSP1 C-terminal conserved region TREBR_RS12115 PF01554 MatE TREBR_RS12120 PF01636 Phosphotransferase enzyme family TREBR_RS12135 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS12140 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS12145 PF17386 Lacto-N-biose phosphorylase C-terminal domain TREBR_RS12145 PF17385 Lacto-N-biose phosphorylase central domain TREBR_RS12145 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain TREBR_RS12150 PF04055 Radical SAM superfamily TREBR_RS12150 PF13186 Iron-sulfur cluster-binding domain TREBR_RS12155 PF00884 Sulfatase TREBR_RS12155 PF16347 Domain of unknown function (DUF4976) TREBR_RS12160 PF02073 Thermophilic metalloprotease (M29) TREBR_RS12175 PF01926 50S ribosome-binding GTPase TREBR_RS12175 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TREBR_RS12180 PF05524 PEP-utilising enzyme, N-terminal TREBR_RS12180 PF00391 PEP-utilising enzyme, mobile domain TREBR_RS12180 PF02896 PEP-utilising enzyme, TIM barrel domain TREBR_RS12185 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TREBR_RS12185 PF01502 Phosphoribosyl-AMP cyclohydrolase TREBR_RS12190 PF00815 Histidinol dehydrogenase TREBR_RS12200 PF01594 AI-2E family transporter TREBR_RS12215 PF02664 S-Ribosylhomocysteinase (LuxS) TREBR_RS12220 PF10509 Galactokinase galactose-binding signature TREBR_RS12220 PF08544 GHMP kinases C terminal TREBR_RS12220 PF00288 GHMP kinases N terminal domain TREBR_RS12225 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TREBR_RS12225 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TREBR_RS12230 PF00293 NUDIX domain TREBR_RS12235 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TREBR_RS12235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREBR_RS12235 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TREBR_RS12235 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TREBR_RS12235 PF10371 Domain of unknown function TREBR_RS12245 PF03459 TOBE domain TREBR_RS12245 PF00005 ABC transporter TREBR_RS12255 PF10460 Peptidase M30 TREBR_RS12260 PF04452 RNA methyltransferase TREBR_RS12280 PF02527 rRNA small subunit methyltransferase G TREBR_RS12290 PF00012 Hsp70 protein TREBR_RS12300 PF02743 Cache domain TREBR_RS12300 PF00211 Adenylate and Guanylate cyclase catalytic domain TREBR_RS12300 PF00672 HAMP domain TREBR_RS12305 PF01435 Peptidase family M48 TREBR_RS12315 PF00999 Sodium/hydrogen exchanger family TREBR_RS12325 PF00365 Phosphofructokinase TREBR_RS12330 PF01979 Amidohydrolase family TREBR_RS12335 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS12340 PF06153 Cyclic-di-AMP receptor TREBR_RS12375 PF16295 Tetracyclin repressor-like, C-terminal domain TREBR_RS12375 PF00440 Bacterial regulatory proteins, tetR family TREBR_RS12380 PF17674 HHH domain TREBR_RS12380 PF00575 S1 RNA binding domain TREBR_RS12380 PF16921 Tex protein YqgF-like domain TREBR_RS12380 PF09371 Tex-like protein N-terminal domain TREBR_RS12430 PF00171 Aldehyde dehydrogenase family TREBR_RS12440 PF00700 Bacterial flagellin C-terminal helical region TREBR_RS12440 PF00669 Bacterial flagellin N-terminal helical region TREBR_RS12445 PF13662 Toprim domain TREBR_RS12445 PF02132 RecR protein TREBR_RS12450 PF02575 YbaB/EbfC DNA-binding family TREBR_RS12455 PF12169 DNA polymerase III subunits gamma and tau domain III TREBR_RS12465 PF00270 DEAD/DEAH box helicase TREBR_RS12465 PF04408 Helicase associated domain (HA2) TREBR_RS12465 PF00271 Helicase conserved C-terminal domain TREBR_RS12465 PF08482 ATP-dependent helicase C-terminal TREBR_RS12470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS12470 PF00672 HAMP domain TREBR_RS12470 PF02203 Tar ligand binding domain homologue TREBR_RS12475 PF03006 Haemolysin-III related TREBR_RS12480 PF00588 SpoU rRNA Methylase family TREBR_RS12480 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREBR_RS12485 PF02810 SEC-C motif TREBR_RS12510 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREBR_RS12515 PF02386 Cation transport protein TREBR_RS12525 PF00183 Hsp90 protein TREBR_RS12535 PF00491 Arginase family TREBR_RS12545 PF02872 5'-nucleotidase, C-terminal domain TREBR_RS12545 PF00149 Calcineurin-like phosphoesterase TREBR_RS12555 PF02926 THUMP domain TREBR_RS12555 PF01170 Putative RNA methylase family UPF0020 TREBR_RS12580 PF01420 Type I restriction modification DNA specificity domain TREBR_RS12585 PF12161 HsdM N-terminal domain TREBR_RS12585 PF02384 N-6 DNA Methylase TREBR_RS12590 PF08463 EcoEI R protein C-terminal TREBR_RS12590 PF04851 Type III restriction enzyme, res subunit TREBR_RS12590 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TREBR_RS12590 PF00271 Helicase conserved C-terminal domain TREBR_RS12630 PF02195 ParB-like nuclease domain TREBR_RS12660 PF00176 SNF2 family N-terminal domain TREBR_RS12660 PF00271 Helicase conserved C-terminal domain TREBR_RS12665 PF17191 RecG wedge domain TREBR_RS12665 PF13749 Putative ATP-dependent DNA helicase recG C-terminal TREBR_RS12665 PF00270 DEAD/DEAH box helicase TREBR_RS12680 PF02796 Helix-turn-helix domain of resolvase TREBR_RS12680 PF00239 Resolvase, N terminal domain TREBR_RS12695 PF07715 TonB-dependent Receptor Plug Domain TREBR_RS12695 PF00593 TonB dependent receptor TREBR_RS12700 PF02965 Vitamin B12 dependent methionine synthase, activation domain TREBR_RS12700 PF02310 B12 binding domain TREBR_RS12700 PF02607 B12 binding domain TREBR_RS12700 PF00809 Pterin binding enzyme TREBR_RS12700 PF02574 Homocysteine S-methyltransferase TREBR_RS12715 PF00535 Glycosyl transferase family 2 TREBR_RS12735 PF04304 Protein of unknown function (DUF454) TREBR_RS12745 PF00005 ABC transporter TREBR_RS12755 PF01497 Periplasmic binding protein TREBR_RS12760 PF01032 FecCD transport family TREBR_RS12765 PF00005 ABC transporter TREBR_RS12785 PF12833 Helix-turn-helix domain TREBR_RS12785 PF00072 Response regulator receiver domain TREBR_RS12790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS12790 PF06580 Histidine kinase TREBR_RS12790 PF02743 Cache domain TREBR_RS12790 PF00672 HAMP domain TREBR_RS12800 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS12805 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS12815 PF17189 Glycosyl hydrolase family 30 beta sandwich domain TREBR_RS12820 PF08497 Radical SAM N-terminal TREBR_RS12820 PF11842 Domain of unknown function (DUF3362) TREBR_RS12820 PF04055 Radical SAM superfamily TREBR_RS12835 PF13091 PLD-like domain TREBR_RS12850 PF01252 Signal peptidase (SPase) II TREBR_RS12855 PF01784 NIF3 (NGG1p interacting factor 3) TREBR_RS12865 PF08668 HDOD domain TREBR_RS12870 PF00588 SpoU rRNA Methylase family TREBR_RS12885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREBR_RS12920 PF00905 Penicillin binding protein transpeptidase domain TREBR_RS12920 PF00912 Transglycosylase TREBR_RS12920 PF06832 Penicillin-Binding Protein C-terminus Family TREBR_RS12930 PF02673 Bacitracin resistance protein BacA TREBR_RS12940 PF03063 Prismane/CO dehydrogenase family TREBR_RS12955 PF00156 Phosphoribosyl transferase domain TREBR_RS12965 PF00365 Phosphofructokinase TREBR_RS12970 PF08279 HTH domain TREBR_RS12970 PF02237 Biotin protein ligase C terminal domain TREBR_RS12970 PF03099 Biotin/lipoate A/B protein ligase family TREBR_RS12980 PF07556 Protein of unknown function (DUF1538) TREBR_RS12985 PF01048 Phosphorylase superfamily TREBR_RS12995 PF04298 Putative neutral zinc metallopeptidase TREBR_RS13005 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS13010 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS13015 PF13419 Haloacid dehalogenase-like hydrolase TREBR_RS13025 PF12833 Helix-turn-helix domain TREBR_RS13025 PF00072 Response regulator receiver domain TREBR_RS13030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS13030 PF00672 HAMP domain TREBR_RS13030 PF02743 Cache domain TREBR_RS13030 PF06580 Histidine kinase TREBR_RS13050 PF00331 Glycosyl hydrolase family 10 TREBR_RS13050 PF07859 alpha/beta hydrolase fold TREBR_RS13055 PF01966 HD domain TREBR_RS13070 PF00899 ThiF family TREBR_RS13095 PF00480 ROK family TREBR_RS13100 PF03932 CutC family TREBR_RS13105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREBR_RS13105 PF03466 LysR substrate binding domain TREBR_RS13115 PF00294 pfkB family carbohydrate kinase TREBR_RS13150 PF00544 Pectate lyase TREBR_RS13175 PF03484 tRNA synthetase B5 domain TREBR_RS13175 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TREBR_RS13230 PF00005 ABC transporter TREBR_RS13230 PF12704 MacB-like periplasmic core domain TREBR_RS13230 PF02687 FtsX-like permease family TREBR_RS13265 PF07690 Major Facilitator Superfamily TREBR_RS13270 PF00356 Bacterial regulatory proteins, lacI family TREBR_RS13285 PF02677 Epoxyqueuosine reductase QueH TREBR_RS13290 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS13295 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS13305 PF00696 Amino acid kinase family TREBR_RS13305 PF00583 Acetyltransferase (GNAT) family TREBR_RS13310 PF00521 DNA gyrase/topoisomerase IV, subunit A TREBR_RS13310 PF03989 DNA gyrase C-terminal domain, beta-propeller TREBR_RS13315 PF01751 Toprim domain TREBR_RS13315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS13315 PF00986 DNA gyrase B subunit, carboxyl terminus TREBR_RS13315 PF00204 DNA gyrase B TREBR_RS13345 PF13649 Methyltransferase domain TREBR_RS13350 PF00528 Binding-protein-dependent transport system inner membrane component TREBR_RS13365 PF03636 Glycosyl hydrolase family 65, N-terminal domain TREBR_RS13365 PF03632 Glycosyl hydrolase family 65 central catalytic domain TREBR_RS13365 PF03633 Glycosyl hydrolase family 65, C-terminal domain TREBR_RS13370 PF00440 Bacterial regulatory proteins, tetR family TREBR_RS13375 PF01202 Shikimate kinase TREBR_RS13380 PF00367 phosphotransferase system, EIIB TREBR_RS13380 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TREBR_RS13380 PF02378 Phosphotransferase system, EIIC TREBR_RS13385 PF12833 Helix-turn-helix domain TREBR_RS13385 PF00072 Response regulator receiver domain TREBR_RS13390 PF01476 LysM domain TREBR_RS13390 PF00877 NlpC/P60 family TREBR_RS13400 PF17200 Single Cache domain 2 TREBR_RS13400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13400 PF00672 HAMP domain TREBR_RS13405 PF00672 HAMP domain TREBR_RS13405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13410 PF01180 Dihydroorotate dehydrogenase TREBR_RS13435 PF00072 Response regulator receiver domain TREBR_RS13440 PF11849 Domain of unknown function (DUF3369) TREBR_RS13455 PF12833 Helix-turn-helix domain TREBR_RS13455 PF02311 AraC-like ligand binding domain TREBR_RS13460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13460 PF00672 HAMP domain TREBR_RS13460 PF02743 Cache domain TREBR_RS13465 PF03781 Sulfatase-modifying factor enzyme 1 TREBR_RS13485 PF00535 Glycosyl transferase family 2 TREBR_RS13490 PF00534 Glycosyl transferases group 1 TREBR_RS13490 PF13439 Glycosyltransferase Family 4 TREBR_RS13495 PF13439 Glycosyltransferase Family 4 TREBR_RS13495 PF00534 Glycosyl transferases group 1 TREBR_RS13505 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS13505 PF00072 Response regulator receiver domain TREBR_RS13555 PF00872 Transposase, Mutator family TREBR_RS13565 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS13565 PF03707 Bacterial signalling protein N terminal repeat TREBR_RS13565 PF00563 EAL domain TREBR_RS13570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13570 PF00672 HAMP domain TREBR_RS13570 PF17202 Single cache domain 3 TREBR_RS13590 PF00672 HAMP domain TREBR_RS13590 PF02743 Cache domain TREBR_RS13590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13610 PF02743 Cache domain TREBR_RS13610 PF00672 HAMP domain TREBR_RS13630 PF08402 TOBE domain TREBR_RS13630 PF00005 ABC transporter TREBR_RS13635 PF03958 Bacterial type II/III secretion system short domain TREBR_RS13635 PF00263 Bacterial type II and III secretion system protein TREBR_RS13650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13650 PF00672 HAMP domain TREBR_RS13650 PF02743 Cache domain TREBR_RS13655 PF00211 Adenylate and Guanylate cyclase catalytic domain TREBR_RS13660 PF01339 CheB methylesterase TREBR_RS13660 PF00072 Response regulator receiver domain TREBR_RS13675 PF06445 GyrI-like small molecule binding domain TREBR_RS13675 PF12833 Helix-turn-helix domain TREBR_RS13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREBR_RS13690 PF00672 HAMP domain TREBR_RS13690 PF13426 PAS domain TREBR_RS13690 PF00512 His Kinase A (phospho-acceptor) domain TREBR_RS13700 PF00534 Glycosyl transferases group 1 TREBR_RS13700 PF13439 Glycosyltransferase Family 4 TREBR_RS13705 PF00534 Glycosyl transferases group 1 TREBR_RS13705 PF13439 Glycosyltransferase Family 4 TREBR_RS13735 PF03707 Bacterial signalling protein N terminal repeat TREBR_RS13735 PF00563 EAL domain TREBR_RS13735 PF00990 Diguanylate cyclase, GGDEF domain TREBR_RS13750 PF01171 PP-loop family TREBR_RS13760 PF00534 Glycosyl transferases group 1 TREBR_RS13780 PF00535 Glycosyl transferase family 2 TREBR_RS13785 PF00072 Response regulator receiver domain TREBR_RS13790 PF00849 RNA pseudouridylate synthase TREBR_RS13870 PF02203 Tar ligand binding domain homologue TREBR_RS13870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13870 PF00672 HAMP domain TREBR_RS13875 PF02203 Tar ligand binding domain homologue TREBR_RS13875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREBR_RS13875 PF00672 HAMP domain TREBR_RS13895 PF13185 GAF domain TREBR_RS13895 PF00158 Sigma-54 interaction domain TREBR_RS13895 PF02954 Bacterial regulatory protein, Fis family TREBR_RS13900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREBR_RS13920 PF12833 Helix-turn-helix domain TREBR_RS13920 PF02311 AraC-like ligand binding domain TREBR_RS13925 PF03853 YjeF-related protein N-terminus TREBR_RS13925 PF01256 Carbohydrate kinase TREBR_RS13930 PF01734 Patatin-like phospholipase TREBR_RS13955 PF07703 Alpha-2-macroglobulin bait region domain TREBR_RS13955 PF17962 Bacterial macroglobulin domain 6 TREBR_RS13955 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain TREBR_RS13955 PF11974 Bacterial alpha-2-macroglobulin MG3 domain TREBR_RS13955 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TREBR_RS13955 PF00207 Alpha-2-macroglobulin family TREBR_RS13955 PF01835 MG2 domain