locus-tag class description TDE0001 PF11638 DnaA N-terminal domain TDE0001 PF00308 Bacterial dnaA protein TDE0001 PF08299 Bacterial dnaA protein helix-turn-helix TDE0002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE0002 PF00986 DNA gyrase B subunit, carboxyl terminus TDE0002 PF00204 DNA gyrase B TDE0002 PF01751 Toprim domain TDE0006 PF00176 SNF2 family N-terminal domain TDE0006 PF12419 SNF2 Helicase protein TDE0006 PF00271 Helicase conserved C-terminal domain TDE0008 PF00403 Heavy-metal-associated domain TDE0010 PF00293 NUDIX domain TDE0011 PF00578 AhpC/TSA family TDE0011 PF10417 C-terminal domain of 1-Cys peroxiredoxin TDE0012 PF02554 Carbon starvation protein CstA TDE0013 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TDE0013 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TDE0016 PF12002 MgsA AAA+ ATPase C terminal TDE0016 PF16193 AAA C-terminal domain TDE0016 PF00004 ATPase family associated with various cellular activities (AAA) TDE0017 PF05343 M42 glutamyl aminopeptidase TDE0018 PF00756 Putative esterase TDE0018 PF01476 LysM domain TDE0019 PF01268 Formate--tetrahydrofolate ligase TDE0020 PF03129 Anticodon binding domain TDE0020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE0024 PF00933 Glycosyl hydrolase family 3 N terminal domain TDE0024 PF01915 Glycosyl hydrolase family 3 C-terminal domain TDE0028 PF00005 ABC transporter TDE0029 PF00664 ABC transporter transmembrane region TDE0029 PF00005 ABC transporter TDE0030 PF01790 Prolipoprotein diacylglyceryl transferase TDE0033 PF00072 Response regulator receiver domain TDE0033 PF04397 LytTr DNA-binding domain TDE0038 PF00109 Beta-ketoacyl synthase, N-terminal domain TDE0038 PF02801 Beta-ketoacyl synthase, C-terminal domain TDE0040 PF00501 AMP-binding enzyme TDE0040 PF13193 AMP-binding enzyme C-terminal domain TDE0041 PF08279 HTH domain TDE0041 PF03099 Biotin/lipoate A/B protein ligase family TDE0041 PF02237 Biotin protein ligase C terminal domain TDE0042 PF01515 Phosphate acetyl/butaryl transferase TDE0043 PF13176 Tetratricopeptide repeat TDE0043 PF13174 Tetratricopeptide repeat TDE0044 PF12848 ABC transporter TDE0044 PF00005 ABC transporter TDE0045 PF00005 ABC transporter TDE0047 PF01979 Amidohydrolase family TDE0052 PF01313 Bacterial export proteins, family 3 TDE0053 PF01311 Bacterial export proteins, family 1 TDE0054 PF01312 FlhB HrpN YscU SpaS Family TDE0055 PF00771 FHIPEP family TDE0056 PF01192 RNA polymerase Rpb6 TDE0064 PF00365 Phosphofructokinase TDE0067 PF13545 Crp-like helix-turn-helix domain TDE0067 PF00027 Cyclic nucleotide-binding domain TDE0068 PF07687 Peptidase dimerisation domain TDE0068 PF01546 Peptidase family M20/M25/M40 TDE0070 PF04542 Sigma-70 region 2 TDE0070 PF04539 Sigma-70 region 3 TDE0070 PF00140 Sigma-70 factor, region 1.2 TDE0070 PF04545 Sigma-70, region 4 TDE0070 PF03979 Sigma-70 factor, region 1.1 TDE0071 PF01136 Peptidase family U32 TDE0071 PF12392 Collagenase TDE0072 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0072 PF00672 HAMP domain TDE0072 PF02743 Cache domain TDE0073 PF01687 Riboflavin kinase TDE0073 PF06574 FAD synthetase TDE0074 PF13520 Amino acid permease TDE0075 PF00107 Zinc-binding dehydrogenase TDE0075 PF08240 Alcohol dehydrogenase GroES-like domain TDE0076 PF01791 DeoC/LacD family aldolase TDE0077 PF09338 Glycine/sarcosine/betaine reductase component B subunits TDE0080 PF00171 Aldehyde dehydrogenase family TDE0083 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TDE0083 PF01926 50S ribosome-binding GTPase TDE0084 PF00391 PEP-utilising enzyme, mobile domain TDE0084 PF05524 PEP-utilising enzyme, N-terminal TDE0084 PF02896 PEP-utilising enzyme, TIM barrel domain TDE0085 PF00580 UvrD/REP helicase N-terminal domain TDE0085 PF12705 PD-(D/E)XK nuclease superfamily TDE0085 PF13361 UvrD-like helicase C-terminal domain TDE0086 PF12705 PD-(D/E)XK nuclease superfamily TDE0087 PF02254 TrkA-N domain TDE0087 PF02080 TrkA-C domain TDE0088 PF02386 Cation transport protein TDE0089 PF01841 Transglutaminase-like superfamily TDE0092 PF09190 DALR domain TDE0092 PF01406 tRNA synthetases class I (C) catalytic domain TDE0093 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TDE0093 PF01565 FAD binding domain TDE0096 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE0096 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDE0099 PF18273 Type III R-M EcoP15I C-terminal domain TDE0099 PF01555 DNA methylase TDE0100 PF00326 Prolyl oligopeptidase family TDE0100 PF07676 WD40-like Beta Propeller Repeat TDE0101 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TDE0101 PF00128 Alpha amylase, catalytic domain TDE0103 PF00266 Aminotransferase class-V TDE0104 PF01761 3-dehydroquinate synthase TDE0105 PF01048 Phosphorylase superfamily TDE0107 PF00128 Alpha amylase, catalytic domain TDE0109 PF01409 tRNA synthetases class II core domain (F) TDE0110 PF04225 Opacity-associated protein A LysM-like domain TDE0110 PF01551 Peptidase family M23 TDE0112 PF03885 Protein of unknown function (DUF327) TDE0113 PF04468 PSP1 C-terminal conserved region TDE0116 PF03824 High-affinity nickel-transport protein TDE0122 PF01207 Dihydrouridine synthase (Dus) TDE0125 PF00990 Diguanylate cyclase, GGDEF domain TDE0125 PF00072 Response regulator receiver domain TDE0128 PF00563 EAL domain TDE0128 PF00990 Diguanylate cyclase, GGDEF domain TDE0128 PF08448 PAS fold TDE0129 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TDE0129 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TDE0129 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TDE0129 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TDE0130 PF00375 Sodium:dicarboxylate symporter family TDE0134 PF01266 FAD dependent oxidoreductase TDE0135 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE0135 PF04324 BFD-like [2Fe-2S] binding domain TDE0137 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TDE0137 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TDE0138 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TDE0138 PF01565 FAD binding domain TDE0140 PF13936 Helix-turn-helix domain TDE0143 PF01547 Bacterial extracellular solute-binding protein TDE0144 PF00528 Binding-protein-dependent transport system inner membrane component TDE0145 PF08402 TOBE domain TDE0145 PF00005 ABC transporter TDE0146 PF07687 Peptidase dimerisation domain TDE0146 PF01546 Peptidase family M20/M25/M40 TDE0148 PF07730 Histidine kinase TDE0149 PF00196 Bacterial regulatory proteins, luxR family TDE0149 PF00072 Response regulator receiver domain TDE0150 PF07885 Ion channel TDE0150 PF00027 Cyclic nucleotide-binding domain TDE0153 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDE0153 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE0154 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE0155 PF00672 HAMP domain TDE0155 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE0156 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE0157 PF01081 KDPG and KHG aldolase TDE0163 PF00258 Flavodoxin TDE0167 PF00005 ABC transporter TDE0168 PF00392 Bacterial regulatory proteins, gntR family TDE0168 PF07702 UTRA domain TDE0169 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0169 PF00672 HAMP domain TDE0169 PF17202 Single cache domain 3 TDE0170 PF00149 Calcineurin-like phosphoesterase TDE0171 PF13476 AAA domain TDE0172 PF02673 Bacitracin resistance protein BacA TDE0173 PF01580 FtsK/SpoIIIE family TDE0173 PF09397 Ftsk gamma domain TDE0173 PF17854 FtsK alpha domain TDE0174 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TDE0174 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TDE0174 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TDE0175 PF01470 Pyroglutamyl peptidase TDE0178 PF02743 Cache domain TDE0178 PF00672 HAMP domain TDE0178 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0181 PF02743 Cache domain TDE0181 PF00672 HAMP domain TDE0181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0182 PF00005 ABC transporter TDE0183 PF00528 Binding-protein-dependent transport system inner membrane component TDE0184 PF00005 ABC transporter TDE0185 PF00005 ABC transporter TDE0188 PF00962 Adenosine/AMP deaminase TDE0189 PF01925 Sulfite exporter TauE/SafE TDE0190 PF00892 EamA-like transporter family TDE0191 PF13673 Acetyltransferase (GNAT) domain TDE0200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE0204 PF00749 tRNA synthetases class I (E and Q), catalytic domain TDE0207 PF02447 GntP family permease TDE0208 PF02595 Glycerate kinase family TDE0209 PF03600 Citrate transporter TDE0210 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TDE0210 PF12557 Cob(I)alamin adenosyltransferase N terminal TDE0211 PF00528 Binding-protein-dependent transport system inner membrane component TDE0214 PF07238 PilZ domain TDE0217 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TDE0217 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TDE0230 PF02463 RecF/RecN/SMC N terminal domain TDE0231 PF00712 DNA polymerase III beta subunit, N-terminal domain TDE0231 PF02767 DNA polymerase III beta subunit, central domain TDE0231 PF02768 DNA polymerase III beta subunit, C-terminal domain TDE0232 PF01661 Macro domain TDE0233 PF13784 Fic/DOC family N-terminal TDE0233 PF02661 Fic/DOC family TDE0234 PF00005 ABC transporter TDE0237 PF12072 Domain of unknown function (DUF3552) TDE0237 PF00013 KH domain TDE0237 PF01966 HD domain TDE0239 PF02504 Fatty acid synthesis protein TDE0240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TDE0243 PF00005 ABC transporter TDE0244 PF00664 ABC transporter transmembrane region TDE0244 PF00005 ABC transporter TDE0245 PF00664 ABC transporter transmembrane region TDE0245 PF00005 ABC transporter TDE0246 PF17932 Tetracyclin repressor-like, C-terminal domain TDE0246 PF00440 Bacterial regulatory proteins, tetR family TDE0247 PF01078 Magnesium chelatase, subunit ChlI TDE0247 PF17863 AAA lid domain TDE0248 PF04343 Protein of unknown function, DUF488 TDE0249 PF01613 Flavin reductase like domain TDE0250 PF00209 Sodium:neurotransmitter symporter family TDE0251 PF01212 Beta-eliminating lyase TDE0255 PF00005 ABC transporter TDE0258 PF01209 ubiE/COQ5 methyltransferase family TDE0259 PF01047 MarR family TDE0267 PF01725 Ham1 family TDE0273 PF00664 ABC transporter transmembrane region TDE0273 PF00005 ABC transporter TDE0274 PF08021 Siderophore-interacting FAD-binding domain TDE0274 PF00005 ABC transporter TDE0274 PF00664 ABC transporter transmembrane region TDE0274 PF04954 Siderophore-interacting protein TDE0279 PF12146 Serine aminopeptidase, S33 TDE0282 PF00005 ABC transporter TDE0285 PF03764 Elongation factor G, domain IV TDE0285 PF03144 Elongation factor Tu domain 2 TDE0285 PF00009 Elongation factor Tu GTP binding domain TDE0285 PF14492 Elongation Factor G, domain II TDE0285 PF00679 Elongation factor G C-terminus TDE0286 PF00005 ABC transporter TDE0286 PF00664 ABC transporter transmembrane region TDE0287 PF00005 ABC transporter TDE0287 PF03412 Peptidase C39 family TDE0287 PF00664 ABC transporter transmembrane region TDE0292 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TDE0294 PF02080 TrkA-C domain TDE0294 PF02254 TrkA-N domain TDE0295 PF00521 DNA gyrase/topoisomerase IV, subunit A TDE0295 PF03989 DNA gyrase C-terminal domain, beta-propeller TDE0296 PF07837 Formiminotransferase domain, N-terminal subdomain TDE0296 PF02971 Formiminotransferase domain TDE0299 PF00293 NUDIX domain TDE0300 PF02789 Cytosol aminopeptidase family, N-terminal domain TDE0300 PF00883 Cytosol aminopeptidase family, catalytic domain TDE0305 PF01926 50S ribosome-binding GTPase TDE0305 PF06071 Protein of unknown function (DUF933) TDE0306 PF01343 Peptidase family S49 TDE0311 PF02511 Thymidylate synthase complementing protein TDE0312 PF02386 Cation transport protein TDE0313 PF02080 TrkA-C domain TDE0313 PF02254 TrkA-N domain TDE0315 PF00005 ABC transporter TDE0316 PF00005 ABC transporter TDE0316 PF00664 ABC transporter transmembrane region TDE0319 PF17863 AAA lid domain TDE0319 PF07726 ATPase family associated with various cellular activities (AAA) TDE0320 PF03471 Transporter associated domain TDE0320 PF01595 Cyclin M transmembrane N-terminal domain TDE0320 PF00571 CBS domain TDE0321 PF00571 CBS domain TDE0321 PF03471 Transporter associated domain TDE0321 PF01595 Cyclin M transmembrane N-terminal domain TDE0326 PF00570 HRDC domain TDE0326 PF09382 RQC domain TDE0326 PF00271 Helicase conserved C-terminal domain TDE0326 PF00270 DEAD/DEAH box helicase TDE0326 PF16124 RecQ zinc-binding TDE0327 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 TDE0327 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 TDE0327 PF13395 HNH endonuclease TDE0327 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 TDE0328 PF01867 CRISPR associated protein Cas1 TDE0329 PF09827 CRISPR associated protein Cas2 TDE0332 PF00440 Bacterial regulatory proteins, tetR family TDE0333 PF01554 MatE TDE0335 PF00268 Ribonucleotide reductase, small chain TDE0336 PF01594 AI-2E family transporter TDE0337 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TDE0339 PF00440 Bacterial regulatory proteins, tetR family TDE0340 PF00274 Fructose-bisphosphate aldolase class-I TDE0341 PF03477 ATP cone domain TDE0341 PF02867 Ribonucleotide reductase, barrel domain TDE0341 PF00317 Ribonucleotide reductase, all-alpha domain TDE0342 PF03023 Lipid II flippase MurJ TDE0345 PF00672 HAMP domain TDE0345 PF02743 Cache domain TDE0345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0347 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0347 PF00672 HAMP domain TDE0347 PF02743 Cache domain TDE0348 PF00440 Bacterial regulatory proteins, tetR family TDE0348 PF08359 YsiA-like protein, C-terminal region TDE0349 PF00391 PEP-utilising enzyme, mobile domain TDE0349 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDE0350 PF01554 MatE TDE0351 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TDE0351 PF00056 lactate/malate dehydrogenase, NAD binding domain TDE0352 PF02502 Ribose/Galactose Isomerase TDE0354 PF02525 Flavodoxin-like fold TDE0359 PF00664 ABC transporter transmembrane region TDE0359 PF00005 ABC transporter TDE0360 PF00664 ABC transporter transmembrane region TDE0360 PF00005 ABC transporter TDE0361 PF03616 Sodium/glutamate symporter TDE0364 PF00005 ABC transporter TDE0364 PF00664 ABC transporter transmembrane region TDE0366 PF18766 SWI2/SNF2 ATPase TDE0366 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TDE0366 PF11867 Domain of unknown function (DUF3387) TDE0368 PF01420 Type I restriction modification DNA specificity domain TDE0369 PF12161 HsdM N-terminal domain TDE0369 PF02384 N-6 DNA Methylase TDE0370 PF02875 Mur ligase family, glutamate ligase domain TDE0370 PF08245 Mur ligase middle domain TDE0372 PF00005 ABC transporter TDE0372 PF00664 ABC transporter transmembrane region TDE0372 PF03412 Peptidase C39 family TDE0373 PF00664 ABC transporter transmembrane region TDE0373 PF00005 ABC transporter TDE0374 PF00534 Glycosyl transferases group 1 TDE0374 PF13439 Glycosyltransferase Family 4 TDE0375 PF08402 TOBE domain TDE0375 PF00005 ABC transporter TDE0376 PF00528 Binding-protein-dependent transport system inner membrane component TDE0385 PF00005 ABC transporter TDE0387 PF01869 BadF/BadG/BcrA/BcrD ATPase family TDE0389 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TDE0392 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TDE0394 PF00528 Binding-protein-dependent transport system inner membrane component TDE0395 PF00528 Binding-protein-dependent transport system inner membrane component TDE0395 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE0396 PF00005 ABC transporter TDE0396 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE0397 PF00005 ABC transporter TDE0397 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE0398 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE0400 PF03466 LysR substrate binding domain TDE0400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TDE0401 PF02743 Cache domain TDE0401 PF00672 HAMP domain TDE0401 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE0406 PF09820 Predicted AAA-ATPase TDE0406 PF08011 PD-(D/E)XK nuclease superfamily TDE0407 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE0407 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDE0408 PF00175 Oxidoreductase NAD-binding domain TDE0408 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TDE0408 PF00970 Oxidoreductase FAD-binding domain TDE0410 PF01435 Peptidase family M48 TDE0411 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE0411 PF02743 Cache domain TDE0411 PF00672 HAMP domain TDE0425 PF03412 Peptidase C39 family TDE0425 PF00005 ABC transporter TDE0425 PF00664 ABC transporter transmembrane region TDE0431 PF01476 LysM domain TDE0431 PF04972 BON domain TDE0434 PF02915 Rubrerythrin TDE0435 PF16124 RecQ zinc-binding TDE0435 PF00270 DEAD/DEAH box helicase TDE0435 PF00570 HRDC domain TDE0435 PF09382 RQC domain TDE0435 PF00271 Helicase conserved C-terminal domain TDE0436 PF02565 Recombination protein O C terminal TDE0436 PF11967 Recombination protein O N terminal TDE0438 PF01702 Queuine tRNA-ribosyltransferase TDE0444 PF07722 Peptidase C26 TDE0445 PF13520 Amino acid permease TDE0448 PF01791 DeoC/LacD family aldolase TDE0449 PF00210 Ferritin-like domain TDE0450 PF07687 Peptidase dimerisation domain TDE0450 PF01546 Peptidase family M20/M25/M40 TDE0454 PF01171 PP-loop family TDE0455 PF00288 GHMP kinases N terminal domain TDE0455 PF08544 GHMP kinases C terminal TDE0455 PF10509 Galactokinase galactose-binding signature TDE0456 PF01680 SOR/SNZ family TDE0459 PF12671 Putative amidase domain TDE0462 PF00753 Metallo-beta-lactamase superfamily TDE0462 PF16123 Hydroxyacylglutathione hydrolase C-terminus TDE0463 PF01048 Phosphorylase superfamily TDE0470 PF00004 ATPase family associated with various cellular activities (AAA) TDE0470 PF17862 AAA+ lid domain TDE0470 PF01434 Peptidase family M41 TDE0475 PF02687 FtsX-like permease family TDE0475 PF00005 ABC transporter TDE0475 PF12704 MacB-like periplasmic core domain TDE0476 PF02492 CobW/HypB/UreG, nucleotide-binding domain TDE0479 PF03063 Prismane/CO dehydrogenase family TDE0484 PF02743 Cache domain TDE0484 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0484 PF00672 HAMP domain TDE0487 PF00005 ABC transporter TDE0488 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TDE0492 PF00072 Response regulator receiver domain TDE0492 PF00486 Transcriptional regulatory protein, C terminal TDE0494 PF07804 HipA-like C-terminal domain TDE0496 PF01381 Helix-turn-helix TDE0505 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ TDE0535 PF00005 ABC transporter TDE0544 PF03781 Sulfatase-modifying factor enzyme 1 TDE0571 PF03781 Sulfatase-modifying factor enzyme 1 TDE0572 PF03781 Sulfatase-modifying factor enzyme 1 TDE0575 PF02934 GatB/GatE catalytic domain TDE0575 PF02637 GatB domain TDE0576 PF01425 Amidase TDE0582 PF17863 AAA lid domain TDE0582 PF07726 ATPase family associated with various cellular activities (AAA) TDE0583 PF09323 Domain of unknown function (DUF1980) TDE0584 PF03773 Predicted permease TDE0588 PF00221 Aromatic amino acid lyase TDE0589 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TDE0590 PF01039 Carboxyl transferase domain TDE0591 PF02785 Biotin carboxylase C-terminal domain TDE0591 PF00289 Biotin carboxylase, N-terminal domain TDE0591 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TDE0592 PF00364 Biotin-requiring enzyme TDE0597 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TDE0597 PF12241 Trans-2-enoyl-CoA reductase catalytic region TDE0597 PF07055 Enoyl reductase FAD binding domain TDE0601 PF00698 Acyl transferase domain TDE0602 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TDE0602 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TDE0606 PF02195 ParB-like nuclease domain TDE0606 PF17762 HTH domain found in ParB protein TDE0607 PF13614 AAA domain TDE0610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TDE0610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TDE0614 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE0615 PF11761 Cobalamin biosynthesis central region TDE0615 PF01890 Cobalamin synthesis G C-terminus TDE0615 PF11760 Cobalamin synthesis G N-terminal TDE0619 PF02743 Cache domain TDE0619 PF00672 HAMP domain TDE0619 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0621 PF01554 MatE TDE0623 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE0624 PF02571 Precorrin-6x reductase CbiJ/CobK TDE0625 PF00005 ABC transporter TDE0627 PF01025 GrpE TDE0628 PF00012 Hsp70 protein TDE0629 PF01556 DnaJ C terminal domain TDE0629 PF00684 DnaJ central domain TDE0629 PF00226 DnaJ domain TDE0634 PF16916 Dimerisation domain of Zinc Transporter TDE0634 PF01545 Cation efflux family TDE0636 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE0636 PF00005 ABC transporter TDE0637 PF00005 ABC transporter TDE0637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE0638 PF00528 Binding-protein-dependent transport system inner membrane component TDE0638 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE0639 PF00528 Binding-protein-dependent transport system inner membrane component TDE0640 PF02743 Cache domain TDE0640 PF00672 HAMP domain TDE0640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0641 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TDE0643 PF01195 Peptidyl-tRNA hydrolase TDE0644 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDE0644 PF00005 ABC transporter TDE0647 PF03705 CheR methyltransferase, all-alpha domain TDE0647 PF01739 CheR methyltransferase, SAM binding domain TDE0648 PF01339 CheB methylesterase TDE0648 PF00072 Response regulator receiver domain TDE0654 PF07687 Peptidase dimerisation domain TDE0654 PF01546 Peptidase family M20/M25/M40 TDE0655 PF00486 Transcriptional regulatory protein, C terminal TDE0655 PF00072 Response regulator receiver domain TDE0656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE0657 PF00005 ABC transporter TDE0660 PF08279 HTH domain TDE0660 PF13280 WYL domain TDE0662 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TDE0664 PF00691 OmpA family TDE0665 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDE0665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDE0665 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDE0665 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDE0665 PF10371 Domain of unknown function TDE0666 PF00005 ABC transporter TDE0667 PF01458 Uncharacterized protein family (UPF0051) TDE0670 PF00004 ATPase family associated with various cellular activities (AAA) TDE0670 PF05362 Lon protease (S16) C-terminal proteolytic domain TDE0670 PF02190 ATP-dependent protease La (LON) substrate-binding domain TDE0674 PF01661 Macro domain TDE0677 PF01206 Sulfurtransferase TusA TDE0680 PF02355 Protein export membrane protein TDE0681 PF02355 Protein export membrane protein TDE0682 PF02699 Preprotein translocase subunit TDE0684 PF00436 Single-strand binding protein family TDE0685 PF00106 short chain dehydrogenase TDE0686 PF01259 SAICAR synthetase TDE0687 PF00731 AIR carboxylase TDE0689 PF01636 Phosphotransferase enzyme family TDE0691 PF00005 ABC transporter TDE0691 PF00664 ABC transporter transmembrane region TDE0693 PF08543 Phosphomethylpyrimidine kinase TDE0694 PF00005 ABC transporter TDE0702 PF00005 ABC transporter TDE0704 PF01145 SPFH domain / Band 7 family TDE0705 PF01145 SPFH domain / Band 7 family TDE0706 PF02086 D12 class N6 adenine-specific DNA methyltransferase TDE0709 PF01641 SelR domain TDE0709 PF01625 Peptide methionine sulfoxide reductase TDE0714 PF02719 Polysaccharide biosynthesis protein TDE0716 PF02517 CPBP intramembrane metalloprotease TDE0719 PF00005 ABC transporter TDE0719 PF03412 Peptidase C39 family TDE0719 PF00664 ABC transporter transmembrane region TDE0720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TDE0725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TDE0727 PF01799 [2Fe-2S] binding domain TDE0727 PF00111 2Fe-2S iron-sulfur cluster binding domain TDE0728 PF03450 CO dehydrogenase flavoprotein C-terminal domain TDE0728 PF00941 FAD binding domain in molybdopterin dehydrogenase TDE0732 PF00171 Aldehyde dehydrogenase family TDE0737 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TDE0743 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE0744 PF00085 Thioredoxin TDE0746 PF00005 ABC transporter TDE0747 PF01032 FecCD transport family TDE0749 PF02514 CobN/Magnesium Chelatase TDE0750 PF01078 Magnesium chelatase, subunit ChlI TDE0750 PF13519 von Willebrand factor type A domain TDE0750 PF17863 AAA lid domain TDE0751 PF17863 AAA lid domain TDE0751 PF01078 Magnesium chelatase, subunit ChlI TDE0755 PF03553 Na+/H+ antiporter family TDE0756 PF00005 ABC transporter TDE0757 PF01032 FecCD transport family TDE0762 PF00082 Subtilase family TDE0762 PF05922 Peptidase inhibitor I9 TDE0765 PF00009 Elongation factor Tu GTP binding domain TDE0765 PF03144 Elongation factor Tu domain 2 TDE0765 PF03143 Elongation factor Tu C-terminal domain TDE0766 PF00338 Ribosomal protein S10p/S20e TDE0767 PF00297 Ribosomal protein L3 TDE0768 PF00573 Ribosomal protein L4/L1 family TDE0769 PF00276 Ribosomal protein L23 TDE0770 PF03947 Ribosomal Proteins L2, C-terminal domain TDE0770 PF00181 Ribosomal Proteins L2, RNA binding domain TDE0771 PF00203 Ribosomal protein S19 TDE0772 PF00237 Ribosomal protein L22p/L17e TDE0773 PF00189 Ribosomal protein S3, C-terminal domain TDE0773 PF07650 KH domain TDE0774 PF00252 Ribosomal protein L16p/L10e TDE0775 PF00831 Ribosomal L29 protein TDE0776 PF00366 Ribosomal protein S17 TDE0777 PF00238 Ribosomal protein L14p/L23e TDE0778 PF00467 KOW motif TDE0778 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TDE0779 PF00281 Ribosomal protein L5 TDE0779 PF00673 ribosomal L5P family C-terminus TDE0780 PF00253 Ribosomal protein S14p/S29e TDE0781 PF00410 Ribosomal protein S8 TDE0782 PF00347 Ribosomal protein L6 TDE0783 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TDE0784 PF03719 Ribosomal protein S5, C-terminal domain TDE0784 PF00333 Ribosomal protein S5, N-terminal domain TDE0785 PF00327 Ribosomal protein L30p/L7e TDE0786 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TDE0787 PF00344 SecY translocase TDE0788 PF00444 Ribosomal protein L36 TDE0789 PF00416 Ribosomal protein S13/S18 TDE0790 PF00411 Ribosomal protein S11 TDE0791 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TDE0791 PF01000 RNA polymerase Rpb3/RpoA insert domain TDE0791 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TDE0792 PF01196 Ribosomal protein L17 TDE0797 PF00708 Acylphosphatase TDE0799 PF03009 Glycerophosphoryl diester phosphodiesterase family TDE0801 PF02082 Transcriptional regulator TDE0802 PF13460 NAD(P)H-binding TDE0804 PF01139 tRNA-splicing ligase RtcB TDE0812 PF00005 ABC transporter TDE0812 PF00664 ABC transporter transmembrane region TDE0812 PF03412 Peptidase C39 family TDE0813 PF00664 ABC transporter transmembrane region TDE0813 PF00005 ABC transporter TDE0814 PF01638 HxlR-like helix-turn-helix TDE0815 PF03606 C4-dicarboxylate anaerobic carrier TDE0816 PF07687 Peptidase dimerisation domain TDE0816 PF01546 Peptidase family M20/M25/M40 TDE0818 PF00005 ABC transporter TDE0818 PF00664 ABC transporter transmembrane region TDE0819 PF00005 ABC transporter TDE0819 PF00664 ABC transporter transmembrane region TDE0820 PF08361 MAATS-type transcriptional repressor, C-terminal region TDE0820 PF00440 Bacterial regulatory proteins, tetR family TDE0823 PF07977 FabA-like domain TDE0824 PF00188 Cysteine-rich secretory protein family TDE0825 PF02875 Mur ligase family, glutamate ligase domain TDE0825 PF08245 Mur ligase middle domain TDE0825 PF01225 Mur ligase family, catalytic domain TDE0826 PF07411 Domain of unknown function (DUF1508) TDE0828 PF13932 GidA associated domain TDE0828 PF01134 Glucose inhibited division protein A TDE0829 PF02127 Aminopeptidase I zinc metalloprotease (M18) TDE0833 PF03781 Sulfatase-modifying factor enzyme 1 TDE0834 PF02508 Rnf-Nqr subunit, membrane protein TDE0835 PF02508 Rnf-Nqr subunit, membrane protein TDE0836 PF04205 FMN-binding domain TDE0837 PF03116 NQR2, RnfD, RnfE family TDE0838 PF10531 SLBB domain TDE0838 PF13237 4Fe-4S dicluster domain TDE0838 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TDE0838 PF13375 RnfC Barrel sandwich hybrid domain TDE0839 PF17773 UPF0176 acylphosphatase like domain TDE0839 PF00581 Rhodanese-like domain TDE0841 PF13519 von Willebrand factor type A domain TDE0844 PF00391 PEP-utilising enzyme, mobile domain TDE0844 PF02896 PEP-utilising enzyme, TIM barrel domain TDE0846 PF16314 Domain of unknown function (DUF4954) TDE0850 PF02743 Cache domain TDE0850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE0850 PF00672 HAMP domain TDE0852 PF00572 Ribosomal protein L13 TDE0853 PF00380 Ribosomal protein S9/S16 TDE0854 PF02631 RecX family TDE0855 PF00072 Response regulator receiver domain TDE0855 PF00196 Bacterial regulatory proteins, luxR family TDE0856 PF00596 Class II Aldolase and Adducin N-terminal domain TDE0860 PF01479 S4 domain TDE0860 PF00849 RNA pseudouridylate synthase TDE0861 PF00579 tRNA synthetases class I (W and Y) TDE0863 PF02308 MgtC family TDE0864 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDE0864 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDE0864 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDE0864 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDE0868 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TDE0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE0870 PF00149 Calcineurin-like phosphoesterase TDE0870 PF02872 5'-nucleotidase, C-terminal domain TDE0872 PF00154 recA bacterial DNA recombination protein TDE0873 PF02616 Segregation and condensation protein ScpA TDE0874 PF04079 Segregation and condensation complex subunit ScpB TDE0875 PF01479 S4 domain TDE0875 PF00849 RNA pseudouridylate synthase TDE0880 PF02277 Phosphoribosyltransferase TDE0881 PF00886 Ribosomal protein S16 TDE0883 PF01782 RimM N-terminal domain TDE0884 PF01746 tRNA (Guanine-1)-methyltransferase TDE0885 PF01245 Ribosomal protein L19 TDE0891 PF13280 WYL domain TDE0891 PF08279 HTH domain TDE0893 PF00005 ABC transporter TDE0895 PF02311 AraC-like ligand binding domain TDE0895 PF12833 Helix-turn-helix domain TDE0896 PF08021 Siderophore-interacting FAD-binding domain TDE0896 PF04954 Siderophore-interacting protein TDE0896 PF00664 ABC transporter transmembrane region TDE0896 PF00005 ABC transporter TDE0897 PF00664 ABC transporter transmembrane region TDE0897 PF00005 ABC transporter TDE0900 PF00005 ABC transporter TDE0903 PF13361 UvrD-like helicase C-terminal domain TDE0903 PF00580 UvrD/REP helicase N-terminal domain TDE0906 PF00005 ABC transporter TDE0908 PF00005 ABC transporter TDE0908 PF00664 ABC transporter transmembrane region TDE0909 PF01555 DNA methylase TDE0916 PF00664 ABC transporter transmembrane region TDE0916 PF00005 ABC transporter TDE0921 PF00005 ABC transporter TDE0921 PF00664 ABC transporter transmembrane region TDE0922 PF00664 ABC transporter transmembrane region TDE0922 PF00005 ABC transporter TDE0923 PF00005 ABC transporter TDE0923 PF00664 ABC transporter transmembrane region TDE0924 PF04954 Siderophore-interacting protein TDE0924 PF00005 ABC transporter TDE0924 PF00664 ABC transporter transmembrane region TDE0924 PF08021 Siderophore-interacting FAD-binding domain TDE0925 PF01546 Peptidase family M20/M25/M40 TDE0925 PF07687 Peptidase dimerisation domain TDE0928 PF00005 ABC transporter TDE0929 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TDE0929 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TDE0930 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TDE0930 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TDE0931 PF01554 MatE TDE0932 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE0933 PF00871 Acetokinase family TDE0934 PF00166 Chaperonin 10 Kd subunit TDE0937 PF00140 Sigma-70 factor, region 1.2 TDE0937 PF04539 Sigma-70 region 3 TDE0937 PF04542 Sigma-70 region 2 TDE0937 PF04545 Sigma-70, region 4 TDE0937 PF03979 Sigma-70 factor, region 1.1 TDE0938 PF02926 THUMP domain TDE0938 PF01170 Putative RNA methylase family UPF0020 TDE0939 PF01963 TraB family TDE0941 PF00877 NlpC/P60 family TDE0942 PF13193 AMP-binding enzyme C-terminal domain TDE0942 PF00501 AMP-binding enzyme TDE0945 PF03781 Sulfatase-modifying factor enzyme 1 TDE0947 PF00009 Elongation factor Tu GTP binding domain TDE0947 PF03144 Elongation factor Tu domain 2 TDE0947 PF00679 Elongation factor G C-terminus TDE0947 PF14492 Elongation Factor G, domain II TDE0947 PF03764 Elongation factor G, domain IV TDE0949 PF03952 Enolase, N-terminal domain TDE0949 PF00113 Enolase, C-terminal TIM barrel domain TDE0951 PF02608 ABC transporter substrate-binding protein PnrA-like TDE0952 PF00005 ABC transporter TDE0953 PF02653 Branched-chain amino acid transport system / permease component TDE0954 PF02653 Branched-chain amino acid transport system / permease component TDE0955 PF04011 LemA family TDE0956 PF04536 TPM domain TDE0957 PF03009 Glycerophosphoryl diester phosphodiesterase family TDE0958 PF01734 Patatin-like phospholipase TDE0959 PF07009 NusG domain II TDE0960 PF08666 SAF domain TDE0960 PF03102 NeuB family TDE0961 PF00226 DnaJ domain TDE0961 PF01556 DnaJ C terminal domain TDE0961 PF00684 DnaJ central domain TDE0963 PF00817 impB/mucB/samB family TDE0963 PF11799 impB/mucB/samB family C-terminal domain TDE0963 PF11798 IMS family HHH motif TDE0965 PF13277 YmdB-like protein TDE0966 PF01026 TatD related DNase TDE0968 PF09285 Elongation factor P, C-terminal TDE0968 PF01132 Elongation factor P (EF-P) OB domain TDE0968 PF08207 Elongation factor P (EF-P) KOW-like domain TDE0971 PF03485 Arginyl tRNA synthetase N terminal domain TDE0971 PF05746 DALR anticodon binding domain TDE0971 PF00750 tRNA synthetases class I (R) TDE0972 PF00156 Phosphoribosyl transferase domain TDE0973 PF04002 RadC-like JAB domain TDE0977 PF03781 Sulfatase-modifying factor enzyme 1 TDE0979 PF00768 D-alanyl-D-alanine carboxypeptidase TDE0979 PF07943 Penicillin-binding protein 5, C-terminal domain TDE0980 PF01336 OB-fold nucleic acid binding domain TDE0980 PF00152 tRNA synthetases class II (D, K and N) TDE0982 PF01180 Dihydroorotate dehydrogenase TDE0984 PF00528 Binding-protein-dependent transport system inner membrane component TDE0984 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE0985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE0986 PF00005 ABC transporter TDE0986 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE0987 PF00005 ABC transporter TDE0987 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE0988 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE0991 PF00830 Ribosomal L28 family TDE0992 PF01812 5-formyltetrahydrofolate cyclo-ligase family TDE0996 PF01204 Trehalase TDE0997 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TDE0997 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TDE0999 PF01226 Formate/nitrite transporter TDE1000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TDE1000 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TDE1001 PF00156 Phosphoribosyl transferase domain TDE1004 PF00700 Bacterial flagellin C-terminal helical region TDE1004 PF00669 Bacterial flagellin N-terminal helical region TDE1006 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE1006 PF00460 Flagella basal body rod protein TDE1007 PF00460 Flagella basal body rod protein TDE1007 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE1008 PF10135 Rod binding protein TDE1009 PF02743 Cache domain TDE1009 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE1009 PF00672 HAMP domain TDE1010 PF17760 UvrA interaction domain TDE1010 PF17755 UvrA DNA-binding domain TDE1010 PF00005 ABC transporter TDE1012 PF00575 S1 RNA binding domain TDE1012 PF09371 Tex-like protein N-terminal domain TDE1012 PF16921 Tex protein YqgF-like domain TDE1012 PF17674 HHH domain TDE1013 PF01814 Hemerythrin HHE cation binding domain TDE1017 PF13742 OB-fold nucleic acid binding domain TDE1017 PF02601 Exonuclease VII, large subunit TDE1019 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TDE1021 PF16811 TRAP transporter T-component TDE1022 PF13936 Helix-turn-helix domain TDE1023 PF02310 B12 binding domain TDE1024 PF13941 MutL protein TDE1025 PF01783 Ribosomal L32p protein family TDE1026 PF00550 Phosphopantetheine attachment site TDE1027 PF00035 Double-stranded RNA binding motif TDE1027 PF14622 Ribonuclease-III-like TDE1029 PF00011 Hsp20/alpha crystallin family TDE1033 PF13735 tRNA nucleotidyltransferase domain 2 putative TDE1033 PF01743 Poly A polymerase head domain TDE1033 PF12627 Probable RNA and SrmB- binding site of polymerase A TDE1034 PF01544 CorA-like Mg2+ transporter protein TDE1038 PF02719 Polysaccharide biosynthesis protein TDE1039 PF06574 FAD synthetase TDE1039 PF01687 Riboflavin kinase TDE1040 PF00312 Ribosomal protein S15 TDE1041 PF01138 3' exoribonuclease family, domain 1 TDE1041 PF00575 S1 RNA binding domain TDE1041 PF03725 3' exoribonuclease family, domain 2 TDE1041 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TDE1041 PF00013 KH domain TDE1042 PF00692 dUTPase TDE1045 PF04304 Protein of unknown function (DUF454) TDE1046 PF11756 Nitrous oxide-stimulated promoter TDE1047 PF00164 Ribosomal protein S12/S23 TDE1048 PF00177 Ribosomal protein S7p/S5e TDE1049 PF00679 Elongation factor G C-terminus TDE1049 PF14492 Elongation Factor G, domain II TDE1049 PF00009 Elongation factor Tu GTP binding domain TDE1049 PF03144 Elongation factor Tu domain 2 TDE1049 PF03764 Elongation factor G, domain IV TDE1052 PF00301 Rubredoxin TDE1054 PF00672 HAMP domain TDE1054 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE1054 PF02743 Cache domain TDE1055 PF01554 MatE TDE1056 PF03781 Sulfatase-modifying factor enzyme 1 TDE1061 PF00005 ABC transporter TDE1062 PF00005 ABC transporter TDE1063 PF09334 tRNA synthetases class I (M) TDE1063 PF01588 Putative tRNA binding domain TDE1067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE1067 PF00005 ABC transporter TDE1068 PF00005 ABC transporter TDE1068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE1069 PF00528 Binding-protein-dependent transport system inner membrane component TDE1069 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE1070 PF00528 Binding-protein-dependent transport system inner membrane component TDE1071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE1073 PF00528 Binding-protein-dependent transport system inner membrane component TDE1074 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE1074 PF00528 Binding-protein-dependent transport system inner membrane component TDE1075 PF00005 ABC transporter TDE1075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE1076 PF00005 ABC transporter TDE1076 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE1078 PF00753 Metallo-beta-lactamase superfamily TDE1078 PF01613 Flavin reductase like domain TDE1079 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TDE1080 PF00398 Ribosomal RNA adenine dimethylase TDE1082 PF00849 RNA pseudouridylate synthase TDE1083 PF01479 S4 domain TDE1083 PF00849 RNA pseudouridylate synthase TDE1084 PF08245 Mur ligase middle domain TDE1084 PF02875 Mur ligase family, glutamate ligase domain TDE1085 PF01225 Mur ligase family, catalytic domain TDE1085 PF08245 Mur ligase middle domain TDE1085 PF02875 Mur ligase family, glutamate ligase domain TDE1086 PF08340 Domain of unknown function (DUF1732) TDE1086 PF03755 YicC-like family, N-terminal region TDE1090 PF03129 Anticodon binding domain TDE1090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDE1090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE1093 PF16258 Domain of unknown function (DUF4912) TDE1095 PF00842 Alanine racemase, C-terminal domain TDE1095 PF01168 Alanine racemase, N-terminal domain TDE1096 PF02401 LytB protein TDE1104 PF01509 TruB family pseudouridylate synthase (N terminal domain) TDE1105 PF02033 Ribosome-binding factor A TDE1106 PF04760 Translation initiation factor IF-2, N-terminal region TDE1106 PF11987 Translation-initiation factor 2 TDE1106 PF00009 Elongation factor Tu GTP binding domain TDE1107 PF13184 NusA-like KH domain TDE1107 PF00575 S1 RNA binding domain TDE1107 PF08529 NusA N-terminal domain TDE1108 PF17384 RimP C-terminal SH3 domain TDE1108 PF02576 RimP N-terminal domain TDE1109 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TDE1109 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TDE1112 PF05191 Adenylate kinase, active site lid TDE1114 PF00440 Bacterial regulatory proteins, tetR family TDE1114 PF16925 Tetracyclin repressor-like, C-terminal domain TDE1118 PF01212 Beta-eliminating lyase TDE1122 PF01740 STAS domain TDE1130 PF02390 Putative methyltransferase TDE1132 PF01264 Chorismate synthase TDE1162 PF17762 HTH domain found in ParB protein TDE1162 PF02195 ParB-like nuclease domain TDE1173 PF02899 Phage integrase, N-terminal SAM-like domain TDE1173 PF00589 Phage integrase family TDE1175 PF00118 TCP-1/cpn60 chaperonin family TDE1176 PF04055 Radical SAM superfamily TDE1176 PF06969 HemN C-terminal domain TDE1178 PF00005 ABC transporter TDE1179 PF01032 FecCD transport family TDE1181 PF00891 O-methyltransferase domain TDE1183 PF00005 ABC transporter TDE1188 PF02233 NAD(P) transhydrogenase beta subunit TDE1195 PF00326 Prolyl oligopeptidase family TDE1195 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TDE1197 PF02381 MraZ protein, putative antitoxin-like TDE1198 PF01795 MraW methylase family TDE1200 PF01225 Mur ligase family, catalytic domain TDE1200 PF02875 Mur ligase family, glutamate ligase domain TDE1200 PF08245 Mur ligase middle domain TDE1201 PF01098 Cell cycle protein TDE1203 PF02491 SHS2 domain inserted in FTSA TDE1204 PF12327 FtsZ family, C-terminal domain TDE1204 PF00091 Tubulin/FtsZ family, GTPase domain TDE1205 PF00589 Phage integrase family TDE1205 PF02899 Phage integrase, N-terminal SAM-like domain TDE1207 PF17782 DprA winged helix domain TDE1207 PF02481 DNA recombination-mediator protein A TDE1208 PF01396 Topoisomerase DNA binding C4 zinc finger TDE1208 PF01751 Toprim domain TDE1208 PF01131 DNA topoisomerase TDE1209 PF00589 Phage integrase family TDE1209 PF02899 Phage integrase, N-terminal SAM-like domain TDE1210 PF00227 Proteasome subunit TDE1211 PF00004 ATPase family associated with various cellular activities (AAA) TDE1211 PF07724 AAA domain (Cdc48 subfamily) TDE1212 PF00460 Flagella basal body rod protein TDE1213 PF00460 Flagella basal body rod protein TDE1213 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE1214 PF02049 Flagellar hook-basal body complex protein FliE TDE1215 PF01514 Secretory protein of YscJ/FliF family TDE1215 PF08345 Flagellar M-ring protein C-terminal TDE1216 PF14841 FliG middle domain TDE1216 PF14842 FliG N-terminal domain TDE1216 PF01706 FliG C-terminal domain TDE1217 PF02108 Flagellar assembly protein FliH TDE1218 PF18269 T3SS EscN ATPase C-terminal domain TDE1218 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE1218 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDE1221 PF00933 Glycosyl hydrolase family 3 N terminal domain TDE1223 PF00950 ABC 3 transport family TDE1224 PF00950 ABC 3 transport family TDE1225 PF00005 ABC transporter TDE1226 PF01297 Zinc-uptake complex component A periplasmic TDE1227 PF10282 Lactonase, 7-bladed beta-propeller TDE1229 PF16123 Hydroxyacylglutathione hydrolase C-terminus TDE1229 PF00753 Metallo-beta-lactamase superfamily TDE1232 PF03781 Sulfatase-modifying factor enzyme 1 TDE1236 PF00121 Triosephosphate isomerase TDE1240 PF02562 PhoH-like protein TDE1241 PF01966 HD domain TDE1241 PF07697 7TM-HD extracellular TDE1241 PF07698 7TM receptor with intracellular HD hydrolase TDE1242 PF02130 Uncharacterized protein family UPF0054 TDE1243 PF03471 Transporter associated domain TDE1243 PF00571 CBS domain TDE1248 PF01882 Protein of unknown function DUF58 TDE1250 PF00092 von Willebrand factor type A domain TDE1254 PF00488 MutS domain V TDE1254 PF01713 Smr domain TDE1259 PF01235 Sodium:alanine symporter family TDE1260 PF12804 MobA-like NTP transferase domain TDE1261 PF02028 BCCT, betaine/carnitine/choline family transporter TDE1265 PF04551 GcpE protein TDE1266 PF02769 AIR synthase related protein, C-terminal domain TDE1266 PF00586 AIR synthase related protein, N-terminal domain TDE1267 PF02844 Phosphoribosylglycinamide synthetase, N domain TDE1267 PF02843 Phosphoribosylglycinamide synthetase, C domain TDE1267 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TDE1268 PF06044 Dam-replacing family TDE1268 PF17726 Dam-replacing HTH domain TDE1271 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE1271 PF00005 ABC transporter TDE1272 PF00005 ABC transporter TDE1272 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE1274 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE1274 PF00528 Binding-protein-dependent transport system inner membrane component TDE1275 PF00528 Binding-protein-dependent transport system inner membrane component TDE1277 PF12838 4Fe-4S dicluster domain TDE1277 PF02906 Iron only hydrogenase large subunit, C-terminal domain TDE1277 PF02256 Iron hydrogenase small subunit TDE1278 PF04260 Protein of unknown function (DUF436) TDE1279 PF00586 AIR synthase related protein, N-terminal domain TDE1279 PF02769 AIR synthase related protein, C-terminal domain TDE1279 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TDE1284 PF00672 HAMP domain TDE1284 PF02743 Cache domain TDE1284 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE1285 PF01706 FliG C-terminal domain TDE1285 PF14841 FliG middle domain TDE1285 PF14842 FliG N-terminal domain TDE1287 PF17757 UvrB interaction domain TDE1287 PF03461 TRCF domain TDE1287 PF00271 Helicase conserved C-terminal domain TDE1287 PF00270 DEAD/DEAH box helicase TDE1287 PF02559 CarD-like/TRCF domain TDE1292 PF01523 Putative modulator of DNA gyrase TDE1293 PF01523 Putative modulator of DNA gyrase TDE1294 PF00381 PTS HPr component phosphorylation site TDE1297 PF00877 NlpC/P60 family TDE1297 PF01476 LysM domain TDE1301 PF02463 RecF/RecN/SMC N terminal domain TDE1308 PF00456 Transketolase, thiamine diphosphate binding domain TDE1308 PF02779 Transketolase, pyrimidine binding domain TDE1309 PF01523 Putative modulator of DNA gyrase TDE1311 PF00005 ABC transporter TDE1311 PF00664 ABC transporter transmembrane region TDE1312 PF05872 Bacterial protein of unknown function (DUF853) TDE1313 PF10502 Signal peptidase, peptidase S26 TDE1314 PF00905 Penicillin binding protein transpeptidase domain TDE1314 PF03717 Penicillin-binding Protein dimerisation domain TDE1321 PF01205 Uncharacterized protein family UPF0029 TDE1321 PF09186 Domain of unknown function (DUF1949) TDE1330 PF03477 ATP cone domain TDE1332 PF01145 SPFH domain / Band 7 family TDE1333 PF01145 SPFH domain / Band 7 family TDE1335 PF03062 MBOAT, membrane-bound O-acyltransferase family TDE1338 PF00288 GHMP kinases N terminal domain TDE1338 PF08544 GHMP kinases C terminal TDE1339 PF04026 SpoVG TDE1340 PF01386 Ribosomal L25p family TDE1340 PF14693 Ribosomal protein TL5, C-terminal domain TDE1341 PF01171 PP-loop family TDE1343 PF13180 PDZ domain TDE1343 PF17820 PDZ domain TDE1345 PF08275 DNA primase catalytic core, N-terminal domain TDE1345 PF01807 CHC2 zinc finger TDE1346 PF03979 Sigma-70 factor, region 1.1 TDE1346 PF00140 Sigma-70 factor, region 1.2 TDE1346 PF04542 Sigma-70 region 2 TDE1346 PF04539 Sigma-70 region 3 TDE1346 PF04545 Sigma-70, region 4 TDE1352 PF00905 Penicillin binding protein transpeptidase domain TDE1352 PF03717 Penicillin-binding Protein dimerisation domain TDE1353 PF01098 Cell cycle protein TDE1357 PF01263 Aldose 1-epimerase TDE1360 PF00860 Permease family TDE1364 PF10458 Valyl tRNA synthetase tRNA binding arm TDE1364 PF00133 tRNA synthetases class I (I, L, M and V) TDE1364 PF08264 Anticodon-binding domain of tRNA TDE1366 PF01066 CDP-alcohol phosphatidyltransferase TDE1367 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TDE1369 PF04851 Type III restriction enzyme, res subunit TDE1369 PF12344 Ultra-violet resistance protein B TDE1369 PF02151 UvrB/uvrC motif TDE1369 PF00271 Helicase conserved C-terminal domain TDE1369 PF17757 UvrB interaction domain TDE1370 PF03853 YjeF-related protein N-terminus TDE1370 PF01256 Carbohydrate kinase TDE1371 PF00773 RNB domain TDE1375 PF01467 Cytidylyltransferase-like TDE1381 PF01991 ATP synthase (E/31 kDa) subunit TDE1382 PF01022 Bacterial regulatory protein, arsR family TDE1384 PF00403 Heavy-metal-associated domain TDE1386 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE1386 PF02743 Cache domain TDE1386 PF00672 HAMP domain TDE1387 PF01479 S4 domain TDE1387 PF00849 RNA pseudouridylate synthase TDE1390 PF10531 SLBB domain TDE1390 PF13375 RnfC Barrel sandwich hybrid domain TDE1390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TDE1390 PF13237 4Fe-4S dicluster domain TDE1391 PF03116 NQR2, RnfD, RnfE family TDE1397 PF10609 NUBPL iron-transfer P-loop NTPase TDE1399 PF01790 Prolipoprotein diacylglyceryl transferase TDE1400 PF02540 NAD synthase TDE1403 PF12848 ABC transporter TDE1403 PF16326 ABC transporter C-terminal domain TDE1403 PF00005 ABC transporter TDE1404 PF08239 Bacterial SH3 domain TDE1407 PF01966 HD domain TDE1412 PF00999 Sodium/hydrogen exchanger family TDE1414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TDE1414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDE1415 PF00266 Aminotransferase class-V TDE1417 PF00005 ABC transporter TDE1417 PF14524 Wzt C-terminal domain TDE1422 PF00535 Glycosyl transferase family 2 TDE1424 PF05523 WxcM-like, C-terminal TDE1426 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TDE1429 PF00535 Glycosyl transferase family 2 TDE1430 PF00535 Glycosyl transferase family 2 TDE1431 PF00534 Glycosyl transferases group 1 TDE1431 PF13439 Glycosyltransferase Family 4 TDE1433 PF01501 Glycosyl transferase family 8 TDE1433 PF00535 Glycosyl transferase family 2 TDE1435 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase TDE1435 PF00535 Glycosyl transferase family 2 TDE1436 PF02096 60Kd inner membrane protein TDE1437 PF00535 Glycosyl transferase family 2 TDE1437 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 TDE1438 PF00534 Glycosyl transferases group 1 TDE1438 PF13439 Glycosyltransferase Family 4 TDE1439 PF01370 NAD dependent epimerase/dehydratase family TDE1440 PF00483 Nucleotidyl transferase TDE1441 PF16363 GDP-mannose 4,6 dehydratase TDE1442 PF13393 Histidyl-tRNA synthetase TDE1443 PF08032 RNA 2'-O ribose methyltransferase substrate binding TDE1443 PF00588 SpoU rRNA Methylase family TDE1444 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TDE1444 PF00753 Metallo-beta-lactamase superfamily TDE1444 PF10996 Beta-Casp domain TDE1448 PF01177 Asp/Glu/Hydantoin racemase TDE1449 PF03193 RsgA GTPase TDE1450 PF00488 MutS domain V TDE1450 PF01713 Smr domain TDE1453 PF16874 Glycosyl hydrolase family 36 C-terminal domain TDE1453 PF16875 Glycosyl hydrolase family 36 N-terminal domain TDE1454 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TDE1458 PF01973 Protein of unknown function DUF115 TDE1462 PF01300 Telomere recombination TDE1464 PF01668 SmpB protein TDE1465 PF10502 Signal peptidase, peptidase S26 TDE1466 PF06969 HemN C-terminal domain TDE1466 PF04055 Radical SAM superfamily TDE1467 PF00672 HAMP domain TDE1467 PF01966 HD domain TDE1469 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TDE1472 PF07195 Flagellar hook-associated protein 2 C-terminus TDE1472 PF02465 Flagellar hook-associated protein 2 N-terminus TDE1475 PF00700 Bacterial flagellin C-terminal helical region TDE1475 PF00669 Bacterial flagellin N-terminal helical region TDE1477 PF00700 Bacterial flagellin C-terminal helical region TDE1477 PF00669 Bacterial flagellin N-terminal helical region TDE1482 PF01321 Creatinase/Prolidase N-terminal domain TDE1482 PF00557 Metallopeptidase family M24 TDE1487 PF01709 Transcriptional regulator TDE1488 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TDE1488 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TDE1491 PF02895 Signal transducing histidine kinase, homodimeric domain TDE1491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE1491 PF01584 CheW-like domain TDE1491 PF07194 P2 response regulator binding domain TDE1491 PF01627 Hpt domain TDE1492 PF01584 CheW-like domain TDE1494 PF00072 Response regulator receiver domain TDE1496 PF06470 SMC proteins Flexible Hinge Domain TDE1496 PF02463 RecF/RecN/SMC N terminal domain TDE1498 PF13525 Outer membrane lipoprotein TDE1499 PF10397 Adenylosuccinate lyase C-terminus TDE1499 PF00206 Lyase TDE1501 PF00391 PEP-utilising enzyme, mobile domain TDE1501 PF02896 PEP-utilising enzyme, TIM barrel domain TDE1501 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDE1503 PF07498 Rho termination factor, N-terminal domain TDE1503 PF07497 Rho termination factor, RNA-binding domain TDE1503 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE1504 PF01197 Ribosomal protein L31 TDE1506 PF03313 Serine dehydratase alpha chain TDE1507 PF03315 Serine dehydratase beta chain TDE1507 PF01842 ACT domain TDE1509 PF00005 ABC transporter TDE1510 PF03239 Iron permease FTR1 family TDE1511 PF10634 Fe2+ transport protein TDE1515 PF12704 MacB-like periplasmic core domain TDE1515 PF00005 ABC transporter TDE1515 PF02687 FtsX-like permease family TDE1516 PF00005 ABC transporter TDE1520 PF05681 Fumarate hydratase (Fumerase) TDE1521 PF05681 Fumarate hydratase (Fumerase) TDE1521 PF05683 Fumarase C-terminus TDE1522 PF08218 Citrate lyase ligase C-terminal domain TDE1523 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase TDE1535 PF13277 YmdB-like protein TDE1537 PF00348 Polyprenyl synthetase TDE1538 PF01653 NAD-dependent DNA ligase adenylation domain TDE1538 PF00533 BRCA1 C Terminus (BRCT) domain TDE1538 PF03120 NAD-dependent DNA ligase OB-fold domain TDE1540 PF03692 Putative zinc- or iron-chelating domain TDE1543 PF02618 YceG-like family TDE1547 PF01351 Ribonuclease HII TDE1548 PF02575 YbaB/EbfC DNA-binding family TDE1549 PF13662 Toprim domain TDE1549 PF02132 RecR protein TDE1550 PF00365 Phosphofructokinase TDE1551 PF03099 Biotin/lipoate A/B protein ligase family TDE1551 PF10437 Bacterial lipoate protein ligase C-terminus TDE1558 PF05785 Rho-activating domain of cytotoxic necrotizing factor TDE1558 PF18807 Tripartite Tc toxins repeat TDE1560 PF05785 Rho-activating domain of cytotoxic necrotizing factor TDE1560 PF18807 Tripartite Tc toxins repeat TDE1575 PF04055 Radical SAM superfamily TDE1576 PF00919 Uncharacterized protein family UPF0004 TDE1576 PF01938 TRAM domain TDE1576 PF04055 Radical SAM superfamily TDE1578 PF12850 Calcineurin-like phosphoesterase superfamily domain TDE1582 PF08323 Starch synthase catalytic domain TDE1582 PF00534 Glycosyl transferases group 1 TDE1587 PF00152 tRNA synthetases class II (D, K and N) TDE1587 PF02938 GAD domain TDE1587 PF01336 OB-fold nucleic acid binding domain TDE1588 PF00579 tRNA synthetases class I (W and Y) TDE1589 PF01584 CheW-like domain TDE1591 PF01513 ATP-NAD kinase TDE1592 PF00005 ABC transporter TDE1592 PF12848 ABC transporter TDE1593 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TDE1593 PF02906 Iron only hydrogenase large subunit, C-terminal domain TDE1593 PF00037 4Fe-4S binding domain TDE1593 PF02256 Iron hydrogenase small subunit TDE1594 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDE1594 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE1595 PF01888 CbiD TDE1598 PF00005 ABC transporter TDE1599 PF00005 ABC transporter TDE1599 PF00664 ABC transporter transmembrane region TDE1600 PF00664 ABC transporter transmembrane region TDE1600 PF00005 ABC transporter TDE1600 PF04954 Siderophore-interacting protein TDE1600 PF08021 Siderophore-interacting FAD-binding domain TDE1601 PF08361 MAATS-type transcriptional repressor, C-terminal region TDE1601 PF00440 Bacterial regulatory proteins, tetR family TDE1603 PF00005 ABC transporter TDE1606 PF00440 Bacterial regulatory proteins, tetR family TDE1606 PF08361 MAATS-type transcriptional repressor, C-terminal region TDE1607 PF00293 NUDIX domain TDE1608 PF01209 ubiE/COQ5 methyltransferase family TDE1610 PF01381 Helix-turn-helix TDE1616 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TDE1616 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TDE1624 PF02347 Glycine cleavage system P-protein TDE1625 PF02347 Glycine cleavage system P-protein TDE1626 PF01597 Glycine cleavage H-protein TDE1627 PF08669 Glycine cleavage T-protein C-terminal barrel domain TDE1627 PF01571 Aminomethyltransferase folate-binding domain TDE1629 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE1629 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDE1631 PF04223 Citrate lyase, alpha subunit (CitF) TDE1632 PF03328 HpcH/HpaI aldolase/citrate lyase family TDE1633 PF06857 Malonate decarboxylase delta subunit (MdcD) TDE1637 PF01612 3'-5' exonuclease TDE1637 PF00476 DNA polymerase family A TDE1637 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TDE1637 PF01367 5'-3' exonuclease, C-terminal SAM fold TDE1638 PF01121 Dephospho-CoA kinase TDE1640 PF08501 Shikimate dehydrogenase substrate binding domain TDE1640 PF01488 Shikimate / quinate 5-dehydrogenase TDE1640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TDE1641 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TDE1643 PF03793 PASTA domain TDE1644 PF02911 Formyl transferase, C-terminal domain TDE1644 PF00551 Formyl transferase TDE1645 PF01327 Polypeptide deformylase TDE1650 PF00005 ABC transporter TDE1651 PF02632 BioY family TDE1652 PF00005 ABC transporter TDE1652 PF00664 ABC transporter transmembrane region TDE1654 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TDE1654 PF00270 DEAD/DEAH box helicase TDE1654 PF04408 Helicase associated domain (HA2) TDE1654 PF00271 Helicase conserved C-terminal domain TDE1657 PF01029 NusB family TDE1658 PF13145 PPIC-type PPIASE domain TDE1659 PF01411 tRNA synthetases class II (A) TDE1659 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDE1662 PF03796 DnaB-like helicase C terminal domain TDE1662 PF00772 DnaB-like helicase N terminal domain TDE1667 PF01008 Initiation factor 2 subunit family TDE1669 PF00155 Aminotransferase class I and II TDE1671 PF05698 Bacterial trigger factor protein (TF) C-terminus TDE1671 PF05697 Bacterial trigger factor protein (TF) TDE1671 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDE1672 PF00574 Clp protease TDE1673 PF07724 AAA domain (Cdc48 subfamily) TDE1673 PF10431 C-terminal, D2-small domain, of ClpB protein TDE1673 PF06689 ClpX C4-type zinc finger TDE1675 PF01281 Ribosomal protein L9, N-terminal domain TDE1675 PF03948 Ribosomal protein L9, C-terminal domain TDE1676 PF01084 Ribosomal protein S18 TDE1677 PF00436 Single-strand binding protein family TDE1678 PF01250 Ribosomal protein S6 TDE1681 PF01813 ATP synthase subunit D TDE1682 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDE1682 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE1683 PF16886 ATPsynthase alpha/beta subunit N-term extension TDE1683 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDE1683 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE1684 PF00156 Phosphoribosyl transferase domain TDE1685 PF00360 Phytochrome region TDE1685 PF00990 Diguanylate cyclase, GGDEF domain TDE1685 PF01590 GAF domain TDE1685 PF00563 EAL domain TDE1686 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TDE1689 PF00005 ABC transporter TDE1696 PF07364 Metallopeptidase family M81 TDE1696 PF07171 MlrC C-terminus TDE1697 PF00300 Histidine phosphatase superfamily (branch 1) TDE1706 PF02464 Competence-damaged protein TDE1706 PF00994 Probable molybdopterin binding domain TDE1706 PF18146 Damage-inducible protein CinA KH domain TDE1708 PF00795 Carbon-nitrogen hydrolase TDE1709 PF00216 Bacterial DNA-binding protein TDE1710 PF01649 Ribosomal protein S20 TDE1712 PF04620 Flagellar filament outer layer protein Flaa TDE1714 PF01520 N-acetylmuramoyl-L-alanine amidase TDE1715 PF00162 Phosphoglycerate kinase TDE1718 PF00958 GMP synthase C terminal domain TDE1718 PF01171 PP-loop family TDE1718 PF00117 Glutamine amidotransferase class-I TDE1719 PF01047 MarR family TDE1726 PF01743 Poly A polymerase head domain TDE1726 PF12626 Polymerase A arginine-rich C-terminus TDE1726 PF12627 Probable RNA and SrmB- binding site of polymerase A TDE1730 PF02837 Glycosyl hydrolases family 2, sugar binding domain TDE1730 PF16355 Domain of unknown function (DUF4982) TDE1730 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 TDE1730 PF00703 Glycosyl hydrolases family 2 TDE1730 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TDE1732 PF01556 DnaJ C terminal domain TDE1732 PF00226 DnaJ domain TDE1732 PF00684 DnaJ central domain TDE1733 PF00557 Metallopeptidase family M24 TDE1734 PF03372 Endonuclease/Exonuclease/phosphatase family TDE1736 PF00037 4Fe-4S binding domain TDE1738 PF04225 Opacity-associated protein A LysM-like domain TDE1738 PF01551 Peptidase family M23 TDE1741 PF00912 Transglycosylase TDE1741 PF00905 Penicillin binding protein transpeptidase domain TDE1741 PF17092 Penicillin-binding protein OB-like domain TDE1742 PF00501 AMP-binding enzyme TDE1743 PF02417 Chromate transporter TDE1744 PF02417 Chromate transporter TDE1747 PF01467 Cytidylyltransferase-like TDE1748 PF01926 50S ribosome-binding GTPase TDE1748 PF01018 GTP1/OBG TDE1749 PF01016 Ribosomal L27 protein TDE1751 PF00829 Ribosomal prokaryotic L21 protein TDE1752 PF13936 Helix-turn-helix domain TDE1753 PF16363 GDP-mannose 4,6 dehydratase TDE1754 PF06397 Desulfoferrodoxin, N-terminal domain TDE1754 PF01880 Desulfoferrodoxin TDE1760 PF01966 HD domain TDE1784 PF06445 GyrI-like small molecule binding domain TDE1784 PF12833 Helix-turn-helix domain TDE1793 PF00795 Carbon-nitrogen hydrolase TDE1827 PF00795 Carbon-nitrogen hydrolase TDE1844 PF13495 Phage integrase, N-terminal SAM-like domain TDE1844 PF00589 Phage integrase family TDE1851 PF02687 FtsX-like permease family TDE1851 PF00005 ABC transporter TDE1851 PF12704 MacB-like periplasmic core domain TDE1852 PF00005 ABC transporter TDE1863 PF01330 RuvA N terminal domain TDE1864 PF02075 Crossover junction endodeoxyribonuclease RuvC TDE1865 PF05193 Peptidase M16 inactive domain TDE1865 PF08367 Peptidase M16C associated TDE1865 PF00675 Insulinase (Peptidase family M16) TDE1877 PF04452 RNA methyltransferase TDE1882 PF00232 Glycosyl hydrolase family 1 TDE1886 PF04055 Radical SAM superfamily TDE1886 PF00919 Uncharacterized protein family UPF0004 TDE1889 PF05525 Branched-chain amino acid transport protein TDE1893 PF00679 Elongation factor G C-terminus TDE1893 PF14492 Elongation Factor G, domain II TDE1893 PF00009 Elongation factor Tu GTP binding domain TDE1893 PF03144 Elongation factor Tu domain 2 TDE1893 PF06421 GTP-binding protein LepA C-terminus TDE1894 PF04060 Putative Fe-S cluster TDE1895 PF07650 KH domain TDE1895 PF01926 50S ribosome-binding GTPase TDE1896 PF02142 MGS-like domain TDE1896 PF01808 AICARFT/IMPCHase bienzyme TDE1897 PF00551 Formyl transferase TDE1898 PF07517 SecA DEAD-like domain TDE1898 PF07516 SecA Wing and Scaffold domain TDE1898 PF01043 SecA preprotein cross-linking domain TDE1898 PF02810 SEC-C motif TDE1900 PF00392 Bacterial regulatory proteins, gntR family TDE1901 PF00005 ABC transporter TDE1907 PF01648 4'-phosphopantetheinyl transferase superfamily TDE1909 PF02457 DisA bacterial checkpoint controller nucleotide-binding TDE1910 PF02780 Transketolase, C-terminal domain TDE1910 PF02779 Transketolase, pyrimidine binding domain TDE1910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TDE1912 PF02629 CoA binding domain TDE1912 PF06971 Putative DNA-binding protein N-terminus TDE1913 PF10672 S-adenosylmethionine-dependent methyltransferase TDE1914 PF05491 RuvB C-terminal winged helix domain TDE1914 PF17864 RuvB AAA lid domain TDE1914 PF05496 Holliday junction DNA helicase RuvB P-loop domain TDE1915 PF00465 Iron-containing alcohol dehydrogenase TDE1916 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TDE1916 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TDE1917 PF02348 Cytidylyltransferase TDE1919 PF13186 Iron-sulfur cluster-binding domain TDE1925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDE1927 PF03484 tRNA synthetase B5 domain TDE1927 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TDE1931 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TDE1943 PF01479 S4 domain TDE1943 PF00163 Ribosomal protein S4/S9 N-terminal domain TDE1947 PF02653 Branched-chain amino acid transport system / permease component TDE1948 PF02653 Branched-chain amino acid transport system / permease component TDE1949 PF00005 ABC transporter TDE1950 PF02608 ABC transporter substrate-binding protein PnrA-like TDE1951 PF12706 Beta-lactamase superfamily domain TDE1951 PF00753 Metallo-beta-lactamase superfamily TDE1963 PF00009 Elongation factor Tu GTP binding domain TDE1963 PF03144 Elongation factor Tu domain 2 TDE1963 PF09106 Elongation factor SelB, winged helix TDE1963 PF09107 Elongation factor SelB, winged helix TDE1963 PF09105 Elongation factor SelB, winged helix TDE1964 PF02690 Na+/Pi-cotransporter TDE1965 PF00999 Sodium/hydrogen exchanger family TDE1966 PF17820 PDZ domain TDE1966 PF13180 PDZ domain TDE1968 PF01728 FtsJ-like methyltransferase TDE1969 PF02954 Bacterial regulatory protein, Fis family TDE1969 PF00158 Sigma-54 interaction domain TDE1969 PF00072 Response regulator receiver domain TDE1970 PF00512 His Kinase A (phospho-acceptor) domain TDE1970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE1970 PF00989 PAS fold TDE1971 PF09115 DNA polymerase III, delta subunit, C terminal TDE1973 PF02674 Colicin V production protein TDE1974 PF04101 Glycosyltransferase family 28 C-terminal domain TDE1974 PF03033 Glycosyltransferase family 28 N-terminal domain TDE1985 PF04773 FecR protein TDE1986 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE1986 PF00672 HAMP domain TDE1990 PF13307 Helicase C-terminal domain TDE1990 PF06733 DEAD_2 TDE1992 PF01389 OmpA-like transmembrane domain TDE1992 PF00691 OmpA family TDE1993 PF00206 Lyase TDE1993 PF10415 Fumarase C C-terminus TDE1995 PF01078 Magnesium chelatase, subunit ChlI TDE1995 PF13335 Magnesium chelatase, subunit ChlI C-terminal TDE1998 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDE1998 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDE1998 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDE1998 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDE1999 PF00929 Exonuclease TDE2000 PF00005 ABC transporter TDE2001 PF01432 Peptidase family M3 TDE2001 PF08439 Oligopeptidase F TDE2005 PF00440 Bacterial regulatory proteins, tetR family TDE2007 PF04954 Siderophore-interacting protein TDE2007 PF00664 ABC transporter transmembrane region TDE2007 PF00005 ABC transporter TDE2007 PF08021 Siderophore-interacting FAD-binding domain TDE2008 PF00005 ABC transporter TDE2008 PF00664 ABC transporter transmembrane region TDE2009 PF17131 Outer membrane lipoprotein-sorting protein TDE2028 PF00691 OmpA family TDE2029 PF01026 TatD related DNase TDE2030 PF03330 Lytic transglycolase TDE2034 PF00534 Glycosyl transferases group 1 TDE2034 PF13439 Glycosyltransferase Family 4 TDE2035 PF00483 Nucleotidyl transferase TDE2036 PF00004 ATPase family associated with various cellular activities (AAA) TDE2036 PF07724 AAA domain (Cdc48 subfamily) TDE2036 PF17871 AAA lid domain TDE2036 PF02861 Clp amino terminal domain, pathogenicity island component TDE2036 PF10431 C-terminal, D2-small domain, of ClpB protein TDE2037 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain TDE2038 PF02151 UvrB/uvrC motif TDE2040 PF00005 ABC transporter TDE2041 PF02687 FtsX-like permease family TDE2041 PF12704 MacB-like periplasmic core domain TDE2043 PF00448 SRP54-type protein, GTPase domain TDE2043 PF02881 SRP54-type protein, helical bundle domain TDE2049 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE2052 PF00266 Aminotransferase class-V TDE2063 PF07670 Nucleoside recognition TDE2063 PF07664 Ferrous iron transport protein B C terminus TDE2063 PF17910 FeoB cytosolic helical domain TDE2063 PF04023 FeoA domain TDE2063 PF02421 Ferrous iron transport protein B TDE2064 PF04023 FeoA domain TDE2066 PF02609 Exonuclease VII small subunit TDE2069 PF01042 Endoribonuclease L-PSP TDE2074 PF04055 Radical SAM superfamily TDE2075 PF03707 Bacterial signalling protein N terminal repeat TDE2075 PF00990 Diguanylate cyclase, GGDEF domain TDE2075 PF00563 EAL domain TDE2079 PF00158 Sigma-54 interaction domain TDE2079 PF00072 Response regulator receiver domain TDE2079 PF02954 Bacterial regulatory protein, Fis family TDE2080 PF00575 S1 RNA binding domain TDE2084 PF00588 SpoU rRNA Methylase family TDE2085 PF00696 Amino acid kinase family TDE2086 PF00226 DnaJ domain TDE2086 PF00684 DnaJ central domain TDE2086 PF01556 DnaJ C terminal domain TDE2087 PF01176 Translation initiation factor 1A / IF-1 TDE2088 PF01258 Prokaryotic dksA/traR C4-type zinc finger TDE2089 PF02881 SRP54-type protein, helical bundle domain TDE2089 PF02978 Signal peptide binding domain TDE2089 PF00448 SRP54-type protein, GTPase domain TDE2090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TDE2090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TDE2092 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDE2095 PF00144 Beta-lactamase TDE2096 PF07075 Protein of unknown function (DUF1343) TDE2101 PF03781 Sulfatase-modifying factor enzyme 1 TDE2107 PF01979 Amidohydrolase family TDE2109 PF00270 DEAD/DEAH box helicase TDE2109 PF00271 Helicase conserved C-terminal domain TDE2110 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TDE2114 PF00005 ABC transporter TDE2114 PF13732 Domain of unknown function (DUF4162) TDE2117 PF03687 Uncharacterised protein family (UPF0164) TDE2118 PF00521 DNA gyrase/topoisomerase IV, subunit A TDE2120 PF09338 Glycine/sarcosine/betaine reductase component B subunits TDE2121 PF02677 Epoxyqueuosine reductase QueH TDE2123 PF02617 ATP-dependent Clp protease adaptor protein ClpS TDE2124 PF10431 C-terminal, D2-small domain, of ClpB protein TDE2124 PF02861 Clp amino terminal domain, pathogenicity island component TDE2124 PF17871 AAA lid domain TDE2124 PF07724 AAA domain (Cdc48 subfamily) TDE2124 PF00004 ATPase family associated with various cellular activities (AAA) TDE2125 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TDE2131 PF01891 Cobalt uptake substrate-specific transmembrane region TDE2132 PF00005 ABC transporter TDE2140 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TDE2140 PF00326 Prolyl oligopeptidase family TDE2142 PF00672 HAMP domain TDE2142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE2142 PF02743 Cache domain TDE2143 PF06832 Penicillin-Binding Protein C-terminus Family TDE2143 PF00905 Penicillin binding protein transpeptidase domain TDE2143 PF00912 Transglycosylase TDE2144 PF03313 Serine dehydratase alpha chain TDE2145 PF03781 Sulfatase-modifying factor enzyme 1 TDE2149 PF01476 LysM domain TDE2149 PF01464 Transglycosylase SLT domain TDE2151 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TDE2152 PF05164 Cell division protein ZapA TDE2154 PF00453 Ribosomal protein L20 TDE2155 PF01632 Ribosomal protein L35 TDE2156 PF00707 Translation initiation factor IF-3, C-terminal domain TDE2156 PF05198 Translation initiation factor IF-3, N-terminal domain TDE2158 PF00005 ABC transporter TDE2161 PF13302 Acetyltransferase (GNAT) domain TDE2162 PF01189 16S rRNA methyltransferase RsmB/F TDE2162 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TDE2162 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TDE2163 PF04298 Putative neutral zinc metallopeptidase TDE2165 PF02492 CobW/HypB/UreG, nucleotide-binding domain TDE2167 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE2167 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TDE2167 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDE2171 PF08241 Methyltransferase domain TDE2176 PF00239 Resolvase, N terminal domain TDE2179 PF00654 Voltage gated chloride channel TDE2180 PF01926 50S ribosome-binding GTPase TDE2180 PF12631 MnmE helical domain TDE2180 PF10396 GTP-binding protein TrmE N-terminus TDE2181 PF01569 PAP2 superfamily TDE2183 PF14353 CpXC protein TDE2186 PF00501 AMP-binding enzyme TDE2187 PF17762 HTH domain found in ParB protein TDE2187 PF02195 ParB-like nuclease domain TDE2189 PF01551 Peptidase family M23 TDE2189 PF08525 Opacity-associated protein A N-terminal motif TDE2189 PF01476 LysM domain TDE2190 PF01368 DHH family TDE2190 PF02272 DHHA1 domain TDE2190 PF17768 RecJ OB domain TDE2190 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TDE2191 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TDE2191 PF00591 Glycosyl transferase family, a/b domain TDE2191 PF02885 Glycosyl transferase family, helical bundle domain TDE2192 PF00291 Pyridoxal-phosphate dependent enzyme TDE2192 PF14821 Threonine synthase N terminus TDE2194 PF00155 Aminotransferase class I and II TDE2195 PF01479 S4 domain TDE2195 PF00849 RNA pseudouridylate synthase TDE2198 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDE2198 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDE2198 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDE2198 PF10371 Domain of unknown function TDE2198 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDE2199 PF01177 Asp/Glu/Hydantoin racemase TDE2200 PF01053 Cys/Met metabolism PLP-dependent enzyme TDE2204 PF13726 Na+-H+ antiporter family TDE2204 PF03553 Na+/H+ antiporter family TDE2205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TDE2205 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE2208 PF01784 NIF3 (NGG1p interacting factor 3) TDE2212 PF00288 GHMP kinases N terminal domain TDE2212 PF08544 GHMP kinases C terminal TDE2212 PF10509 Galactokinase galactose-binding signature TDE2215 PF02653 Branched-chain amino acid transport system / permease component TDE2216 PF00005 ABC transporter TDE2217 PF13407 Periplasmic binding protein domain TDE2217 PF18610 Periplasmic binding protein domain TDE2219 PF10502 Signal peptidase, peptidase S26 TDE2220 PF04073 Aminoacyl-tRNA editing domain TDE2220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE2220 PF03129 Anticodon binding domain TDE2226 PF01297 Zinc-uptake complex component A periplasmic TDE2228 PF07687 Peptidase dimerisation domain TDE2228 PF01546 Peptidase family M20/M25/M40 TDE2232 PF00005 ABC transporter TDE2233 PF01032 FecCD transport family TDE2234 PF01497 Periplasmic binding protein TDE2235 PF07476 Methylaspartate ammonia-lyase C-terminus TDE2235 PF05034 Methylaspartate ammonia-lyase N-terminus TDE2236 PF06368 Methylaspartate mutase E chain (MutE) TDE2239 PF03781 Sulfatase-modifying factor enzyme 1 TDE2243 PF03932 CutC family TDE2245 PF01751 Toprim domain TDE2245 PF00986 DNA gyrase B subunit, carboxyl terminus TDE2245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE2245 PF00204 DNA gyrase B TDE2248 PF00899 ThiF family TDE2249 PF00953 Glycosyl transferase family 4 TDE2251 PF00860 Permease family TDE2257 PF00149 Calcineurin-like phosphoesterase TDE2257 PF02872 5'-nucleotidase, C-terminal domain TDE2262 PF01136 Peptidase family U32 TDE2262 PF16325 Peptidase family U32 C-terminal domain TDE2264 PF00005 ABC transporter TDE2264 PF00664 ABC transporter transmembrane region TDE2269 PF03781 Sulfatase-modifying factor enzyme 1 TDE2270 PF02743 Cache domain TDE2270 PF00672 HAMP domain TDE2270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE2271 PF01725 Ham1 family TDE2274 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) TDE2275 PF01416 tRNA pseudouridine synthase TDE2277 PF02146 Sir2 family TDE2279 PF08668 HDOD domain TDE2282 PF00152 tRNA synthetases class II (D, K and N) TDE2283 PF00005 ABC transporter TDE2283 PF12704 MacB-like periplasmic core domain TDE2283 PF02687 FtsX-like permease family TDE2286 PF03819 MazG nucleotide pyrophosphohydrolase domain TDE2287 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TDE2287 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDE2289 PF03129 Anticodon binding domain TDE2289 PF02824 TGS domain TDE2289 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE2289 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDE2290 PF02559 CarD-like/TRCF domain TDE2291 PF02542 YgbB family TDE2291 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TDE2292 PF02542 YgbB family TDE2295 PF00924 Mechanosensitive ion channel TDE2298 PF10509 Galactokinase galactose-binding signature TDE2298 PF08544 GHMP kinases C terminal TDE2299 PF00795 Carbon-nitrogen hydrolase TDE2300 PF00595 PDZ domain TDE2302 PF00072 Response regulator receiver domain TDE2303 PF02021 Uncharacterised protein family UPF0102 TDE2307 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE2307 PF02403 Seryl-tRNA synthetase N-terminal domain TDE2309 PF00158 Sigma-54 interaction domain TDE2309 PF01590 GAF domain TDE2315 PF01168 Alanine racemase, N-terminal domain TDE2317 PF03006 Haemolysin-III related TDE2318 PF01551 Peptidase family M23 TDE2318 PF10145 Phage-related minor tail protein TDE2318 PF01464 Transglycosylase SLT domain TDE2323 PF00924 Mechanosensitive ion channel TDE2324 PF00072 Response regulator receiver domain TDE2324 PF00196 Bacterial regulatory proteins, luxR family TDE2326 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDE2327 PF00004 ATPase family associated with various cellular activities (AAA) TDE2327 PF07724 AAA domain (Cdc48 subfamily) TDE2327 PF02861 Clp amino terminal domain, pathogenicity island component TDE2327 PF10431 C-terminal, D2-small domain, of ClpB protein TDE2327 PF17871 AAA lid domain TDE2328 PF03806 AbgT putative transporter family TDE2333 PF02698 DUF218 domain TDE2335 PF00580 UvrD/REP helicase N-terminal domain TDE2335 PF13361 UvrD-like helicase C-terminal domain TDE2336 PF00375 Sodium:dicarboxylate symporter family TDE2337 PF02073 Thermophilic metalloprotease (M29) TDE2339 PF13603 Leucyl-tRNA synthetase, Domain 2 TDE2339 PF09334 tRNA synthetases class I (M) TDE2339 PF08264 Anticodon-binding domain of tRNA TDE2339 PF00133 tRNA synthetases class I (I, L, M and V) TDE2341 PF17820 PDZ domain TDE2341 PF02163 Peptidase family M50 TDE2342 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TDE2342 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TDE2342 PF13288 DXP reductoisomerase C-terminal domain TDE2344 PF01255 Putative undecaprenyl diphosphate synthase TDE2345 PF01765 Ribosome recycling factor TDE2346 PF00889 Elongation factor TS TDE2347 PF00318 Ribosomal protein S2 TDE2348 PF02545 Maf-like protein TDE2352 PF07196 Flagellin hook IN motif TDE2352 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE2353 PF00700 Bacterial flagellin C-terminal helical region TDE2353 PF07196 Flagellin hook IN motif TDE2353 PF00669 Bacterial flagellin N-terminal helical region TDE2354 PF02623 FliW protein TDE2355 PF02599 Global regulator protein family TDE2357 PF01032 FecCD transport family TDE2359 PF02733 Dak1 domain TDE2359 PF02734 DAK2 domain TDE2360 PF02733 Dak1 domain TDE2363 PF00005 ABC transporter TDE2364 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDE2364 PF00005 ABC transporter TDE2365 PF02653 Branched-chain amino acid transport system / permease component TDE2365 PF11862 Domain of unknown function (DUF3382) TDE2366 PF02653 Branched-chain amino acid transport system / permease component TDE2368 PF04073 Aminoacyl-tRNA editing domain TDE2369 PF00578 AhpC/TSA family TDE2371 PF04205 FMN-binding domain TDE2371 PF12801 4Fe-4S binding domain TDE2372 PF08534 Redoxin TDE2373 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE2374 PF05175 Methyltransferase small domain TDE2378 PF00005 ABC transporter TDE2381 PF07730 Histidine kinase TDE2383 PF02654 Cobalamin-5-phosphate synthase TDE2385 PF07478 D-ala D-ala ligase C-terminus TDE2385 PF01820 D-ala D-ala ligase N-terminus TDE2387 PF02446 4-alpha-glucanotransferase TDE2388 PF00574 Clp protease TDE2389 PF03186 CobD/Cbib protein TDE2391 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TDE2395 PF01424 R3H domain TDE2395 PF14804 Jag N-terminus TDE2396 PF02096 60Kd inner membrane protein TDE2396 PF14849 YidC periplasmic domain TDE2398 PF01809 Putative membrane protein insertion efficiency factor TDE2400 PF00468 Ribosomal protein L34 TDE2401 PF01370 NAD dependent epimerase/dehydratase family TDE2403 PF00753 Metallo-beta-lactamase superfamily TDE2404 PF04552 Sigma-54, DNA binding domain TDE2404 PF04963 Sigma-54 factor, core binding domain TDE2404 PF00309 Sigma-54 factor, Activator interacting domain (AID) TDE2407 PF13537 Glutamine amidotransferase domain TDE2407 PF00156 Phosphoribosyl transferase domain TDE2410 PF00155 Aminotransferase class I and II TDE2411 PF00343 Carbohydrate phosphorylase TDE2420 PF00623 RNA polymerase Rpb1, domain 2 TDE2420 PF04983 RNA polymerase Rpb1, domain 3 TDE2420 PF05000 RNA polymerase Rpb1, domain 4 TDE2420 PF04998 RNA polymerase Rpb1, domain 5 TDE2420 PF04997 RNA polymerase Rpb1, domain 1 TDE2421 PF00562 RNA polymerase Rpb2, domain 6 TDE2421 PF10385 RNA polymerase beta subunit external 1 domain TDE2421 PF04565 RNA polymerase Rpb2, domain 3 TDE2421 PF04561 RNA polymerase Rpb2, domain 2 TDE2421 PF04563 RNA polymerase beta subunit TDE2421 PF04560 RNA polymerase Rpb2, domain 7 TDE2422 PF16320 Ribosomal protein L7/L12 dimerisation domain TDE2422 PF00542 Ribosomal protein L7/L12 C-terminal domain TDE2423 PF00466 Ribosomal protein L10 TDE2424 PF00687 Ribosomal protein L1p/L10e family TDE2425 PF03946 Ribosomal protein L11, N-terminal domain TDE2425 PF00298 Ribosomal protein L11, RNA binding domain TDE2426 PF02357 Transcription termination factor nusG TDE2426 PF00467 KOW motif TDE2427 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TDE2428 PF00471 Ribosomal protein L33 TDE2431 PF03412 Peptidase C39 family TDE2431 PF00664 ABC transporter transmembrane region TDE2431 PF00005 ABC transporter TDE2438 PF02254 TrkA-N domain TDE2438 PF07885 Ion channel TDE2439 PF05343 M42 glutamyl aminopeptidase TDE2440 PF03412 Peptidase C39 family TDE2440 PF00005 ABC transporter TDE2440 PF00664 ABC transporter transmembrane region TDE2446 PF00390 Malic enzyme, N-terminal domain TDE2446 PF03949 Malic enzyme, NAD binding domain TDE2447 PF01202 Shikimate kinase TDE2449 PF01871 AMMECR1 TDE2449 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TDE2450 PF12796 Ankyrin repeats (3 copies) TDE2451 PF02547 Queuosine biosynthesis protein TDE2460 PF00266 Aminotransferase class-V TDE2466 PF01206 Sulfurtransferase TusA TDE2470 PF02773 S-adenosylmethionine synthetase, C-terminal domain TDE2470 PF02772 S-adenosylmethionine synthetase, central domain TDE2470 PF00438 S-adenosylmethionine synthetase, N-terminal domain TDE2473 PF01165 Ribosomal protein S21 TDE2475 PF01554 MatE TDE2476 PF00696 Amino acid kinase family TDE2477 PF12390 Selenocysteine synthase N terminal TDE2477 PF03841 L-seryl-tRNA selenium transferase TDE2478 PF01541 GIY-YIG catalytic domain TDE2478 PF02151 UvrB/uvrC motif TDE2478 PF08459 UvrC Helix-hairpin-helix N-terminal TDE2480 PF00183 Hsp90 protein TDE2488 PF05175 Methyltransferase small domain TDE2488 PF17827 PrmC N-terminal domain TDE2489 PF03462 PCRF domain TDE2489 PF00472 RF-1 domain TDE2490 PF18074 Primosomal protein N C-terminal domain TDE2490 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TDE2490 PF17764 3′ DNA-binding domain (3′BD) TDE2490 PF00271 Helicase conserved C-terminal domain TDE2490 PF00270 DEAD/DEAH box helicase TDE2491 PF03167 Uracil DNA glycosylase superfamily TDE2495 PF03781 Sulfatase-modifying factor enzyme 1 TDE2496 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE2496 PF16591 Helical bimodular sensor domain TDE2496 PF00672 HAMP domain TDE2499 PF08241 Methyltransferase domain TDE2501 PF00486 Transcriptional regulatory protein, C terminal TDE2501 PF00072 Response regulator receiver domain TDE2502 PF00072 Response regulator receiver domain TDE2502 PF01627 Hpt domain TDE2502 PF00512 His Kinase A (phospho-acceptor) domain TDE2502 PF00672 HAMP domain TDE2502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE2502 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TDE2504 PF00814 Glycoprotease family TDE2509 PF14525 AraC-binding-like domain TDE2509 PF12833 Helix-turn-helix domain TDE2510 PF00005 ABC transporter TDE2510 PF00664 ABC transporter transmembrane region TDE2511 PF00664 ABC transporter transmembrane region TDE2511 PF00005 ABC transporter TDE2512 PF00171 Aldehyde dehydrogenase family TDE2513 PF02527 rRNA small subunit methyltransferase G TDE2515 PF03781 Sulfatase-modifying factor enzyme 1 TDE2517 PF18073 Rubredoxin metal binding domain TDE2517 PF06745 KaiC TDE2518 PF10609 NUBPL iron-transfer P-loop NTPase TDE2519 PF08011 PD-(D/E)XK nuclease superfamily TDE2519 PF09820 Predicted AAA-ATPase TDE2522 PF00664 ABC transporter transmembrane region TDE2522 PF00005 ABC transporter TDE2524 PF00005 ABC transporter TDE2525 PF01973 Protein of unknown function DUF115 TDE2527 PF04536 TPM domain TDE2530 PF04055 Radical SAM superfamily TDE2534 PF00730 HhH-GPD superfamily base excision DNA repair protein TDE2535 PF02887 Pyruvate kinase, alpha/beta domain TDE2535 PF00224 Pyruvate kinase, barrel domain TDE2535 PF00391 PEP-utilising enzyme, mobile domain TDE2546 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TDE2546 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TDE2549 PF02743 Cache domain TDE2549 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE2549 PF00672 HAMP domain TDE2552 PF00664 ABC transporter transmembrane region TDE2552 PF00005 ABC transporter TDE2553 PF01921 tRNA synthetases class I (K) TDE2554 PF01430 Hsp33 protein TDE2555 PF02570 Precorrin-8X methylmutase TDE2558 PF00664 ABC transporter transmembrane region TDE2558 PF00005 ABC transporter TDE2559 PF00005 ABC transporter TDE2559 PF00664 ABC transporter transmembrane region TDE2561 PF00005 ABC transporter TDE2562 PF00950 ABC 3 transport family TDE2568 PF02568 Thiamine biosynthesis protein (ThiI) TDE2568 PF02926 THUMP domain TDE2569 PF00793 DAHP synthetase I family TDE2570 PF00075 RNase H TDE2571 PF02229 Transcriptional Coactivator p15 (PC4) TDE2572 PF01066 CDP-alcohol phosphatidyltransferase TDE2573 PF00342 Phosphoglucose isomerase TDE2574 PF01926 50S ribosome-binding GTPase TDE2576 PF00849 RNA pseudouridylate synthase TDE2579 PF00270 DEAD/DEAH box helicase TDE2579 PF17191 RecG wedge domain TDE2579 PF00271 Helicase conserved C-terminal domain TDE2580 PF00990 Diguanylate cyclase, GGDEF domain TDE2582 PF00990 Diguanylate cyclase, GGDEF domain TDE2582 PF17158 Membrane-associated sensor, integral membrane domain TDE2584 PF03577 Peptidase family C69 TDE2585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE2585 PF17202 Single cache domain 3 TDE2585 PF00672 HAMP domain TDE2586 PF12169 DNA polymerase III subunits gamma and tau domain III TDE2589 PF02127 Aminopeptidase I zinc metalloprotease (M18) TDE2591 PF17773 UPF0176 acylphosphatase like domain TDE2591 PF00581 Rhodanese-like domain TDE2591 PF12368 Rhodanase C-terminal TDE2592 PF03880 DbpA RNA binding domain TDE2593 PF02830 V4R domain TDE2593 PF02954 Bacterial regulatory protein, Fis family TDE2593 PF06505 Activator of aromatic catabolism TDE2593 PF00158 Sigma-54 interaction domain TDE2597 PF00834 Ribulose-phosphate 3 epimerase family TDE2599 PF02223 Thymidylate kinase TDE2601 PF01103 Surface antigen TDE2601 PF07244 Surface antigen variable number repeat TDE2603 PF05188 MutS domain II TDE2603 PF05192 MutS domain III TDE2603 PF05190 MutS family domain IV TDE2603 PF00488 MutS domain V TDE2603 PF01624 MutS domain I TDE2605 PF00300 Histidine phosphatase superfamily (branch 1) TDE2606 PF17391 Urocanase N-terminal domain TDE2606 PF17392 Urocanase C-terminal domain TDE2606 PF01175 Urocanase Rossmann-like domain TDE2609 PF04055 Radical SAM superfamily TDE2609 PF18693 TRAM domain TDE2609 PF00919 Uncharacterized protein family UPF0004 TDE2614 PF02424 ApbE family TDE2615 PF01252 Signal peptidase (SPase) II TDE2616 PF00027 Cyclic nucleotide-binding domain TDE2616 PF13545 Crp-like helix-turn-helix domain TDE2619 PF05958 tRNA (Uracil-5-)-methyltransferase TDE2622 PF00005 ABC transporter TDE2625 PF00005 ABC transporter TDE2625 PF00664 ABC transporter transmembrane region TDE2626 PF08021 Siderophore-interacting FAD-binding domain TDE2626 PF04954 Siderophore-interacting protein TDE2626 PF00664 ABC transporter transmembrane region TDE2626 PF00005 ABC transporter TDE2629 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE2630 PF00528 Binding-protein-dependent transport system inner membrane component TDE2631 PF00528 Binding-protein-dependent transport system inner membrane component TDE2631 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE2632 PF00005 ABC transporter TDE2632 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE2639 PF08439 Oligopeptidase F TDE2639 PF01432 Peptidase family M3 TDE2641 PF12728 Helix-turn-helix domain TDE2641 PF02661 Fic/DOC family TDE2643 PF01266 FAD dependent oxidoreductase TDE2644 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE2644 PF04324 BFD-like [2Fe-2S] binding domain TDE2646 PF00571 CBS domain TDE2646 PF00005 ABC transporter TDE2647 PF10437 Bacterial lipoate protein ligase C-terminus TDE2647 PF03099 Biotin/lipoate A/B protein ligase family TDE2649 PF00005 ABC transporter TDE2650 PF00392 Bacterial regulatory proteins, gntR family TDE2650 PF00155 Aminotransferase class I and II TDE2651 PF00005 ABC transporter TDE2656 PF06180 Cobalt chelatase (CbiK) TDE2657 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE2658 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDE2658 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDE2659 PF11849 Domain of unknown function (DUF3369) TDE2663 PF08264 Anticodon-binding domain of tRNA TDE2663 PF00133 tRNA synthetases class I (I, L, M and V) TDE2665 PF00478 IMP dehydrogenase / GMP reductase domain TDE2665 PF00571 CBS domain TDE2668 PF00464 Serine hydroxymethyltransferase TDE2669 PF01066 CDP-alcohol phosphatidyltransferase TDE2670 PF00953 Glycosyl transferase family 4 TDE2676 PF00291 Pyridoxal-phosphate dependent enzyme TDE2676 PF14821 Threonine synthase N terminus TDE2683 PF04539 Sigma-70 region 3 TDE2683 PF04545 Sigma-70, region 4 TDE2683 PF04542 Sigma-70 region 2 TDE2685 PF10609 NUBPL iron-transfer P-loop NTPase TDE2686 PF00448 SRP54-type protein, GTPase domain TDE2687 PF00155 Aminotransferase class I and II TDE2692 PF06418 CTP synthase N-terminus TDE2692 PF00117 Glutamine amidotransferase class-I TDE2700 PF03390 2-hydroxycarboxylate transporter family TDE2713 PF00588 SpoU rRNA Methylase family TDE2713 PF08032 RNA 2'-O ribose methyltransferase substrate binding TDE2714 PF03781 Sulfatase-modifying factor enzyme 1 TDE2716 PF13419 Haloacid dehalogenase-like hydrolase TDE2718 PF03448 MgtE intracellular N domain TDE2718 PF01769 Divalent cation transporter TDE2718 PF00571 CBS domain TDE2720 PF04452 RNA methyltransferase TDE2723 PF14572 Phosphoribosyl synthetase-associated domain TDE2723 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TDE2725 PF00072 Response regulator receiver domain TDE2725 PF00990 Diguanylate cyclase, GGDEF domain TDE2726 PF00990 Diguanylate cyclase, GGDEF domain TDE2727 PF03193 RsgA GTPase TDE2730 PF01026 TatD related DNase TDE2731 PF01207 Dihydrouridine synthase (Dus) TDE2739 PF00892 EamA-like transporter family TDE2742 PF00589 Phage integrase family TDE2742 PF02899 Phage integrase, N-terminal SAM-like domain TDE2744 PF01420 Type I restriction modification DNA specificity domain TDE2745 PF05860 haemagglutination activity domain TDE2745 PF13332 Hemagglutinin repeat TDE2745 PF02661 Fic/DOC family TDE2745 PF13018 Extended Signal Peptide of Type V secretion system TDE2745 PF03543 Yersinia/Haemophilus virulence surface antigen TDE2746 PF02384 N-6 DNA Methylase TDE2746 PF12161 HsdM N-terminal domain TDE2747 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TDE2747 PF00271 Helicase conserved C-terminal domain TDE2747 PF08463 EcoEI R protein C-terminal TDE2747 PF04851 Type III restriction enzyme, res subunit TDE2750 PF13167 GTP-binding GTPase N-terminal TDE2750 PF16360 GTP-binding GTPase Middle Region TDE2750 PF01926 50S ribosome-binding GTPase TDE2753 PF01551 Peptidase family M23 TDE2753 PF04225 Opacity-associated protein A LysM-like domain TDE2754 PF02423 Ornithine cyclodeaminase/mu-crystallin family TDE2756 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE2758 PF01934 Protein of unknown function DUF86 TDE2760 PF00813 FliP family TDE2762 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDE2762 PF04509 CheC-like family TDE2763 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDE2763 PF02154 Flagellar motor switch protein FliM TDE2764 PF03748 Flagellar basal body-associated protein FliL TDE2765 PF13677 Membrane MotB of proton-channel complex MotA/MotB TDE2765 PF00691 OmpA family TDE2766 PF01618 MotA/TolQ/ExbB proton channel family TDE2768 PF07559 Flagellar basal body protein FlaE TDE2768 PF00460 Flagella basal body rod protein TDE2768 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE2769 PF03963 Flagellar hook capping protein - N-terminal region TDE2772 PF00005 ABC transporter TDE2772 PF00664 ABC transporter transmembrane region TDE2776 PF00561 alpha/beta hydrolase fold TDE2781 PF00664 ABC transporter transmembrane region TDE2781 PF00005 ABC transporter TDE2782 PF00005 ABC transporter TDE2782 PF00664 ABC transporter transmembrane region TDE2783 PF02743 Cache domain TDE2783 PF00672 HAMP domain TDE2783 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE2784 PF17239 Family of unknown function (DUF5312) TDE2786 PF02811 PHP domain TDE2786 PF14579 Helix-hairpin-helix motif TDE2786 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TDE2786 PF07733 Bacterial DNA polymerase III alpha NTPase domain