locus-tag class description TP_RS00005 PF00308 Bacterial dnaA protein TP_RS00005 PF11638 DnaA N-terminal domain TP_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix TP_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain TP_RS00010 PF02767 DNA polymerase III beta subunit, central domain TP_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain TP_RS00015 PF02463 RecF/RecN/SMC N terminal domain TP_RS00020 PF05258 Dna[CI] antecedent, DciA TP_RS00025 PF03989 DNA gyrase C-terminal domain, beta-propeller TP_RS00025 PF00521 DNA gyrase/topoisomerase IV, subunit A TP_RS00035 PF12683 Protein of unknown function (DUF3798) TP_RS00055 PF12683 Protein of unknown function (DUF3798) TP_RS00060 PF12683 Protein of unknown function (DUF3798) TP_RS00065 PF03484 tRNA synthetase B5 domain TP_RS00065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TP_RS00070 PF05362 Lon protease (S16) C-terminal proteolytic domain TP_RS00070 PF13654 AAA domain TP_RS00085 PF03449 Transcription elongation factor, N-terminal TP_RS00085 PF01272 Transcription elongation factor, GreA/GreB, C-term TP_RS00130 PF00209 Sodium:neurotransmitter symporter family TP_RS00140 PF08367 Peptidase M16C associated TP_RS00140 PF05193 Peptidase M16 inactive domain TP_RS00140 PF00675 Insulinase (Peptidase family M16) TP_RS00145 PF14842 FliG N-terminal domain TP_RS00145 PF01706 FliG C-terminal domain TP_RS00145 PF14841 FliG middle domain TP_RS00150 PF00571 CBS domain TP_RS00150 PF03471 Transporter associated domain TP_RS00150 PF01595 Cyclin M transmembrane N-terminal domain TP_RS00155 PF01595 Cyclin M transmembrane N-terminal domain TP_RS00155 PF03471 Transporter associated domain TP_RS00155 PF00571 CBS domain TP_RS00160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TP_RS00165 PF00118 TCP-1/cpn60 chaperonin family TP_RS00175 PF04452 RNA methyltransferase TP_RS00185 PF01297 Zinc-uptake complex component A periplasmic TP_RS00190 PF00005 ABC transporter TP_RS00195 PF00950 ABC 3 transport family TP_RS00200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TP_RS00200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TP_RS00215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_RS00215 PF00672 HAMP domain TP_RS00220 PF01476 LysM domain TP_RS00230 PF01134 Glucose inhibited division protein A TP_RS00230 PF13932 GidA associated domain TP_RS00235 PF00962 Adenosine/AMP deaminase TP_RS00240 PF04468 PSP1 C-terminal conserved region TP_RS00255 PF01551 Peptidase family M23 TP_RS00255 PF08525 Opacity-associated protein A N-terminal motif TP_RS00255 PF01476 LysM domain TP_RS00265 PF00472 RF-1 domain TP_RS00265 PF03462 PCRF domain TP_RS00270 PF05175 Methyltransferase small domain TP_RS00270 PF17827 PrmC N-terminal domain TP_RS00275 PF00268 Ribonucleotide reductase, small chain TP_RS00290 PF00364 Biotin-requiring enzyme TP_RS00290 PF02436 Conserved carboxylase domain TP_RS00290 PF00682 HMGL-like TP_RS00295 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TP_RS00300 PF00772 DnaB-like helicase N terminal domain TP_RS00300 PF03796 DnaB-like helicase C terminal domain TP_RS00305 PF03948 Ribosomal protein L9, C-terminal domain TP_RS00305 PF01281 Ribosomal protein L9, N-terminal domain TP_RS00310 PF01084 Ribosomal protein S18 TP_RS00315 PF00436 Single-strand binding protein family TP_RS00320 PF01250 Ribosomal protein S6 TP_RS00345 PF04055 Radical SAM superfamily TP_RS00360 PF00004 ATPase family associated with various cellular activities (AAA) TP_RS00360 PF10431 C-terminal, D2-small domain, of ClpB protein TP_RS00360 PF02861 Clp amino terminal domain, pathogenicity island component TP_RS00360 PF07724 AAA domain (Cdc48 subfamily) TP_RS00360 PF17871 AAA lid domain TP_RS00370 PF08668 HDOD domain TP_RS00380 PF00528 Binding-protein-dependent transport system inner membrane component TP_RS00385 PF00528 Binding-protein-dependent transport system inner membrane component TP_RS00390 PF02719 Polysaccharide biosynthesis protein TP_RS00395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TP_RS00410 PF00941 FAD binding domain in molybdopterin dehydrogenase TP_RS00415 PF00158 Sigma-54 interaction domain TP_RS00415 PF01590 GAF domain TP_RS00430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TP_RS00430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TP_RS00435 PF07238 PilZ domain TP_RS00450 PF00027 Cyclic nucleotide-binding domain TP_RS00450 PF13545 Crp-like helix-turn-helix domain TP_RS00455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TP_RS00455 PF01565 FAD binding domain TP_RS00460 PF01406 tRNA synthetases class I (C) catalytic domain TP_RS00465 PF04545 Sigma-70, region 4 TP_RS00465 PF04539 Sigma-70 region 3 TP_RS00465 PF04542 Sigma-70 region 2 TP_RS00475 PF01515 Phosphate acetyl/butaryl transferase TP_RS00480 PF13174 Tetratricopeptide repeat TP_RS00480 PF13176 Tetratricopeptide repeat TP_RS00490 PF01176 Translation initiation factor 1A / IF-1 TP_RS00495 PF00226 DnaJ domain TP_RS00495 PF01556 DnaJ C terminal domain TP_RS00495 PF00684 DnaJ central domain TP_RS00500 PF00696 Amino acid kinase family TP_RS00505 PF00578 AhpC/TSA family TP_RS00510 PF02683 Cytochrome C biogenesis protein transmembrane region TP_RS00515 PF13361 UvrD-like helicase C-terminal domain TP_RS00515 PF00580 UvrD/REP helicase N-terminal domain TP_RS00520 PF00270 DEAD/DEAH box helicase TP_RS00520 PF00271 Helicase conserved C-terminal domain TP_RS00520 PF00570 HRDC domain TP_RS00520 PF16124 RecQ zinc-binding TP_RS00520 PF09382 RQC domain TP_RS00525 PF00149 Calcineurin-like phosphoesterase TP_RS00525 PF02872 5'-nucleotidase, C-terminal domain TP_RS00530 PF01367 5'-3' exonuclease, C-terminal SAM fold TP_RS00530 PF01612 3'-5' exonuclease TP_RS00530 PF00476 DNA polymerase family A TP_RS00530 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TP_RS00535 PF02028 BCCT, betaine/carnitine/choline family transporter TP_RS00540 PF12804 MobA-like NTP transferase domain TP_RS00545 PF00365 Phosphofructokinase TP_RS00550 PF08032 RNA 2'-O ribose methyltransferase substrate binding TP_RS00550 PF00588 SpoU rRNA Methylase family TP_RS00570 PF17239 Family of unknown function (DUF5312) TP_RS00575 PF04552 Sigma-54, DNA binding domain TP_RS00575 PF04963 Sigma-54 factor, core binding domain TP_RS00575 PF00309 Sigma-54 factor, Activator interacting domain (AID) TP_RS00580 PF03051 Peptidase C1-like family TP_RS00585 PF01145 SPFH domain / Band 7 family TP_RS00590 PF01145 SPFH domain / Band 7 family TP_RS00595 PF08543 Phosphomethylpyrimidine kinase TP_RS00600 PF00271 Helicase conserved C-terminal domain TP_RS00600 PF02151 UvrB/uvrC motif TP_RS00600 PF17757 UvrB interaction domain TP_RS00600 PF04851 Type III restriction enzyme, res subunit TP_RS00600 PF12344 Ultra-violet resistance protein B TP_RS00615 PF00528 Binding-protein-dependent transport system inner membrane component TP_RS00620 PF00005 ABC transporter TP_RS00620 PF09383 NIL domain TP_RS00630 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain TP_RS00630 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain TP_RS00640 PF01926 50S ribosome-binding GTPase TP_RS00640 PF06071 Protein of unknown function (DUF933) TP_RS00645 PF03372 Endonuclease/Exonuclease/phosphatase family TP_RS00655 PF10895 Domain of unknown function (DUF2715) TP_RS00720 PF02254 TrkA-N domain TP_RS00720 PF02080 TrkA-C domain TP_RS00725 PF02386 Cation transport protein TP_RS00730 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TP_RS00730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TP_RS00735 PF00005 ABC transporter TP_RS00735 PF08402 TOBE domain TP_RS00740 PF00528 Binding-protein-dependent transport system inner membrane component TP_RS00745 PF01547 Bacterial extracellular solute-binding protein TP_RS00750 PF00501 AMP-binding enzyme TP_RS00770 PF09094 Domain of unknown function (DUF1925) TP_RS00770 PF09095 Domain of unknown function (DUF1926) TP_RS00770 PF03065 Glycosyl hydrolase family 57 TP_RS00800 PF02681 Divergent PAP2 family TP_RS00835 PF04073 Aminoacyl-tRNA editing domain TP_RS00835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP_RS00835 PF03129 Anticodon binding domain TP_RS00840 PF17864 RuvB AAA lid domain TP_RS00840 PF05496 Holliday junction DNA helicase RuvB P-loop domain TP_RS00840 PF05491 RuvB C-terminal winged helix domain TP_RS00845 PF01297 Zinc-uptake complex component A periplasmic TP_RS00850 PF00005 ABC transporter TP_RS00855 PF00950 ABC 3 transport family TP_RS00860 PF00950 ABC 3 transport family TP_RS00865 PF18357 Diphteria toxin repressor SH3 domain TP_RS00865 PF02742 Iron dependent repressor, metal binding and dimerisation domain TP_RS00865 PF01325 Iron dependent repressor, N-terminal DNA binding domain TP_RS00870 PF00300 Histidine phosphatase superfamily (branch 1) TP_RS00880 PF01048 Phosphorylase superfamily TP_RS00885 PF04205 FMN-binding domain TP_RS00910 PF01973 Protein of unknown function DUF115 TP_RS00925 PF04977 Septum formation initiator TP_RS00930 PF01300 Telomere recombination TP_RS00940 PF01668 SmpB protein TP_RS00945 PF10502 Signal peptidase, peptidase S26 TP_RS00950 PF06969 HemN C-terminal domain TP_RS00950 PF04055 Radical SAM superfamily TP_RS00955 PF00009 Elongation factor Tu GTP binding domain TP_RS00955 PF03144 Elongation factor Tu domain 2 TP_RS00955 PF03143 Elongation factor Tu C-terminal domain TP_RS00960 PF00338 Ribosomal protein S10p/S20e TP_RS00965 PF00297 Ribosomal protein L3 TP_RS00970 PF00573 Ribosomal protein L4/L1 family TP_RS00975 PF00276 Ribosomal protein L23 TP_RS00980 PF00181 Ribosomal Proteins L2, RNA binding domain TP_RS00980 PF03947 Ribosomal Proteins L2, C-terminal domain TP_RS00985 PF00203 Ribosomal protein S19 TP_RS00990 PF00237 Ribosomal protein L22p/L17e TP_RS00995 PF07650 KH domain TP_RS00995 PF00189 Ribosomal protein S3, C-terminal domain TP_RS01000 PF00252 Ribosomal protein L16p/L10e TP_RS01005 PF00831 Ribosomal L29 protein TP_RS01010 PF00366 Ribosomal protein S17 TP_RS01015 PF00238 Ribosomal protein L14p/L23e TP_RS01020 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TP_RS01020 PF00467 KOW motif TP_RS01025 PF00673 ribosomal L5P family C-terminus TP_RS01025 PF00281 Ribosomal protein L5 TP_RS01030 PF00410 Ribosomal protein S8 TP_RS01035 PF00347 Ribosomal protein L6 TP_RS01040 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TP_RS01045 PF00333 Ribosomal protein S5, N-terminal domain TP_RS01045 PF03719 Ribosomal protein S5, C-terminal domain TP_RS01050 PF00327 Ribosomal protein L30p/L7e TP_RS01055 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TP_RS01060 PF00344 SecY translocase TP_RS01065 PF00416 Ribosomal protein S13/S18 TP_RS01070 PF00411 Ribosomal protein S11 TP_RS01075 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TP_RS01075 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TP_RS01075 PF01000 RNA polymerase Rpb3/RpoA insert domain TP_RS01080 PF01196 Ribosomal protein L17 TP_RS01090 PF01025 GrpE TP_RS01095 PF00012 Hsp70 protein TP_RS01115 PF01740 STAS domain TP_RS01160 PF02361 Cobalt transport protein TP_RS01165 PF00005 ABC transporter TP_RS01170 PF02632 BioY family TP_RS01175 PF03167 Uracil DNA glycosylase superfamily TP_RS01180 PF00270 DEAD/DEAH box helicase TP_RS01180 PF00271 Helicase conserved C-terminal domain TP_RS01180 PF17764 3′ DNA-binding domain (3′BD) TP_RS01180 PF18074 Primosomal protein N C-terminal domain TP_RS01180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TP_RS01185 PF01479 S4 domain TP_RS01185 PF00849 RNA pseudouridylate synthase TP_RS01200 PF00471 Ribosomal protein L33 TP_RS01210 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TP_RS01215 PF00467 KOW motif TP_RS01215 PF02357 Transcription termination factor nusG TP_RS01220 PF03946 Ribosomal protein L11, N-terminal domain TP_RS01220 PF00298 Ribosomal protein L11, RNA binding domain TP_RS01225 PF00687 Ribosomal protein L1p/L10e family TP_RS01230 PF00466 Ribosomal protein L10 TP_RS01235 PF16320 Ribosomal protein L7/L12 dimerisation domain TP_RS01235 PF00542 Ribosomal protein L7/L12 C-terminal domain TP_RS01240 PF04561 RNA polymerase Rpb2, domain 2 TP_RS01240 PF04563 RNA polymerase beta subunit TP_RS01240 PF04565 RNA polymerase Rpb2, domain 3 TP_RS01240 PF00562 RNA polymerase Rpb2, domain 6 TP_RS01240 PF04560 RNA polymerase Rpb2, domain 7 TP_RS01240 PF10385 RNA polymerase beta subunit external 1 domain TP_RS01245 PF05000 RNA polymerase Rpb1, domain 4 TP_RS01245 PF04997 RNA polymerase Rpb1, domain 1 TP_RS01245 PF04983 RNA polymerase Rpb1, domain 3 TP_RS01245 PF00623 RNA polymerase Rpb1, domain 2 TP_RS01245 PF04998 RNA polymerase Rpb1, domain 5 TP_RS01250 PF00164 Ribosomal protein S12/S23 TP_RS01255 PF00177 Ribosomal protein S7p/S5e TP_RS01265 PF00092 von Willebrand factor type A domain TP_RS01270 PF01520 N-acetylmuramoyl-L-alanine amidase TP_RS01280 PF04620 Flagellar filament outer layer protein Flaa TP_RS01285 PF00216 Bacterial DNA-binding protein TP_RS01290 PF00795 Carbon-nitrogen hydrolase TP_RS01300 PF07498 Rho termination factor, N-terminal domain TP_RS01300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_RS01300 PF07497 Rho termination factor, RNA-binding domain TP_RS01305 PF01197 Ribosomal protein L31 TP_RS01310 PF01066 CDP-alcohol phosphatidyltransferase TP_RS01315 PF03009 Glycerophosphoryl diester phosphodiesterase family TP_RS01330 PF08239 Bacterial SH3 domain TP_RS01340 PF13545 Crp-like helix-turn-helix domain TP_RS01340 PF00027 Cyclic nucleotide-binding domain TP_RS01350 PF01791 DeoC/LacD family aldolase TP_RS01355 PF05525 Branched-chain amino acid transport protein TP_RS01390 PF00919 Uncharacterized protein family UPF0004 TP_RS01390 PF04055 Radical SAM superfamily TP_RS01395 PF13735 tRNA nucleotidyltransferase domain 2 putative TP_RS01395 PF12627 Probable RNA and SrmB- binding site of polymerase A TP_RS01395 PF01743 Poly A polymerase head domain TP_RS01400 PF02195 ParB-like nuclease domain TP_RS01400 PF17762 HTH domain found in ParB protein TP_RS01405 PF13614 AAA domain TP_RS01430 PF03572 Peptidase family S41 TP_RS01430 PF13180 PDZ domain TP_RS01435 PF00575 S1 RNA binding domain TP_RS01445 PF01467 Cytidylyltransferase-like TP_RS01455 PF13186 Iron-sulfur cluster-binding domain TP_RS01480 PF00691 OmpA family TP_RS01485 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TP_RS01485 PF14572 Phosphoribosyl synthetase-associated domain TP_RS01495 PF01121 Dephospho-CoA kinase TP_RS01505 PF02608 ABC transporter substrate-binding protein PnrA-like TP_RS01510 PF00005 ABC transporter TP_RS01515 PF00005 ABC transporter TP_RS01520 PF02653 Branched-chain amino acid transport system / permease component TP_RS01525 PF02653 Branched-chain amino acid transport system / permease component TP_RS01530 PF01119 DNA mismatch repair protein, C-terminal domain TP_RS01530 PF08676 MutL C terminal dimerisation domain TP_RS01540 PF00117 Glutamine amidotransferase class-I TP_RS01540 PF06418 CTP synthase N-terminus TP_RS01545 PF01479 S4 domain TP_RS01545 PF00163 Ribosomal protein S4/S9 N-terminal domain TP_RS01555 PF00497 Bacterial extracellular solute-binding proteins, family 3 TP_RS01595 PF02608 ABC transporter substrate-binding protein PnrA-like TP_RS01600 PF00005 ABC transporter TP_RS01605 PF02653 Branched-chain amino acid transport system / permease component TP_RS01610 PF02653 Branched-chain amino acid transport system / permease component TP_RS01625 PF01103 Surface antigen TP_RS01625 PF07244 Surface antigen variable number repeat TP_RS01635 PF05190 MutS family domain IV TP_RS01635 PF00488 MutS domain V TP_RS01635 PF01624 MutS domain I TP_RS01635 PF05188 MutS domain II TP_RS01635 PF05192 MutS domain III TP_RS01665 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TP_RS01665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TP_RS01680 PF02517 CPBP intramembrane metalloprotease TP_RS01690 PF00398 Ribosomal RNA adenine dimethylase TP_RS01700 PF00849 RNA pseudouridylate synthase TP_RS01705 PF02875 Mur ligase family, glutamate ligase domain TP_RS01705 PF08245 Mur ligase middle domain TP_RS01710 PF08245 Mur ligase middle domain TP_RS01710 PF01225 Mur ligase family, catalytic domain TP_RS01710 PF02875 Mur ligase family, glutamate ligase domain TP_RS01720 PF00633 Helix-hairpin-helix motif TP_RS01720 PF00730 HhH-GPD superfamily base excision DNA repair protein TP_RS01720 PF14815 NUDIX domain TP_RS01725 PF03461 TRCF domain TP_RS01725 PF17757 UvrB interaction domain TP_RS01725 PF00271 Helicase conserved C-terminal domain TP_RS01725 PF00270 DEAD/DEAH box helicase TP_RS01725 PF02559 CarD-like/TRCF domain TP_RS01730 PF00953 Glycosyl transferase family 4 TP_RS01740 PF10895 Domain of unknown function (DUF2715) TP_RS01750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP_RS01755 PF00171 Aldehyde dehydrogenase family TP_RS01760 PF00696 Amino acid kinase family TP_RS01765 PF02229 Transcriptional Coactivator p15 (PC4) TP_RS01770 PF00075 RNase H TP_RS01775 PF02223 Thymidylate kinase TP_RS01785 PF03099 Biotin/lipoate A/B protein ligase family TP_RS01785 PF02237 Biotin protein ligase C terminal domain TP_RS01785 PF08279 HTH domain TP_RS01790 PF03065 Glycosyl hydrolase family 57 TP_RS01790 PF09210 Domain of unknown function (DUF1957) TP_RS01795 PF16258 Domain of unknown function (DUF4912) TP_RS01815 PF01584 CheW-like domain TP_RS01815 PF02895 Signal transducing histidine kinase, homodimeric domain TP_RS01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP_RS01815 PF01627 Hpt domain TP_RS01815 PF07194 P2 response regulator binding domain TP_RS01820 PF01584 CheW-like domain TP_RS01830 PF00072 Response regulator receiver domain TP_RS01840 PF06470 SMC proteins Flexible Hinge Domain TP_RS01840 PF02463 RecF/RecN/SMC N terminal domain TP_RS01850 PF13525 Outer membrane lipoprotein TP_RS01860 PF00288 GHMP kinases N terminal domain TP_RS01870 PF14693 Ribosomal protein TL5, C-terminal domain TP_RS01870 PF01386 Ribosomal L25p family TP_RS01875 PF01171 PP-loop family TP_RS01900 PF01043 SecA preprotein cross-linking domain TP_RS01900 PF07517 SecA DEAD-like domain TP_RS01900 PF02810 SEC-C motif TP_RS01900 PF07516 SecA Wing and Scaffold domain TP_RS01910 PF09529 Integral membrane protein (intg_mem_TP0381) TP_RS01915 PF02381 MraZ protein, putative antitoxin-like TP_RS01920 PF01795 MraW methylase family TP_RS01930 PF02875 Mur ligase family, glutamate ligase domain TP_RS01930 PF01225 Mur ligase family, catalytic domain TP_RS01930 PF08245 Mur ligase middle domain TP_RS01935 PF01098 Cell cycle protein TP_RS01940 PF08478 POTRA domain, FtsQ-type TP_RS01940 PF03799 Cell division protein FtsQ TP_RS01945 PF02491 SHS2 domain inserted in FTSA TP_RS01950 PF00091 Tubulin/FtsZ family, GTPase domain TP_RS01950 PF12327 FtsZ family, C-terminal domain TP_RS01955 PF00589 Phage integrase family TP_RS01955 PF02899 Phage integrase, N-terminal SAM-like domain TP_RS01965 PF02481 DNA recombination-mediator protein A TP_RS01965 PF17782 DprA winged helix domain TP_RS01970 PF01751 Toprim domain TP_RS01970 PF01131 DNA topoisomerase TP_RS01970 PF01396 Topoisomerase DNA binding C4 zinc finger TP_RS01975 PF00589 Phage integrase family TP_RS01975 PF02899 Phage integrase, N-terminal SAM-like domain TP_RS01980 PF00460 Flagella basal body rod protein TP_RS01985 PF00460 Flagella basal body rod protein TP_RS01985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_RS01990 PF02049 Flagellar hook-basal body complex protein FliE TP_RS01995 PF01514 Secretory protein of YscJ/FliF family TP_RS01995 PF08345 Flagellar M-ring protein C-terminal TP_RS02000 PF01706 FliG C-terminal domain TP_RS02000 PF14841 FliG middle domain TP_RS02000 PF14842 FliG N-terminal domain TP_RS02005 PF02108 Flagellar assembly protein FliH TP_RS02010 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_RS02010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_RS02010 PF18269 T3SS EscN ATPase C-terminal domain TP_RS02030 PF01177 Asp/Glu/Hydantoin racemase TP_RS02035 PF13419 Haloacid dehalogenase-like hydrolase TP_RS02045 PF02699 Preprotein translocase subunit TP_RS02050 PF02355 Protein export membrane protein TP_RS02055 PF02355 Protein export membrane protein TP_RS02065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TP_RS02065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP_RS02065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP_RS02065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP_RS02070 PF01235 Sodium:alanine symporter family TP_RS02080 PF02881 SRP54-type protein, helical bundle domain TP_RS02080 PF00448 SRP54-type protein, GTPase domain TP_RS02080 PF02978 Signal peptide binding domain TP_RS02085 PF00795 Carbon-nitrogen hydrolase TP_RS02090 PF08544 GHMP kinases C terminal TP_RS02090 PF10509 Galactokinase galactose-binding signature TP_RS02095 PF01975 Survival protein SurE TP_RS02130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_RS02130 PF16886 ATPsynthase alpha/beta subunit N-term extension TP_RS02130 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_RS02135 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_RS02135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_RS02140 PF01813 ATP synthase subunit D TP_RS02155 PF03309 Type III pantothenate kinase TP_RS02170 PF04170 NlpE N-terminal domain TP_RS02175 PF01368 DHH family TP_RS02175 PF02833 DHHA2 domain TP_RS02185 PF01725 Ham1 family TP_RS02190 PF01584 CheW-like domain TP_RS02200 PF01513 ATP-NAD kinase TP_RS02205 PF02463 RecF/RecN/SMC N terminal domain TP_RS02225 PF04551 GcpE protein TP_RS02245 PF03764 Elongation factor G, domain IV TP_RS02245 PF00679 Elongation factor G C-terminus TP_RS02245 PF03144 Elongation factor Tu domain 2 TP_RS02245 PF00009 Elongation factor Tu GTP binding domain TP_RS02245 PF14492 Elongation Factor G, domain II TP_RS02255 PF00133 tRNA synthetases class I (I, L, M and V) TP_RS02255 PF08264 Anticodon-binding domain of tRNA TP_RS02285 PF04079 Segregation and condensation complex subunit ScpB TP_RS02290 PF01479 S4 domain TP_RS02290 PF00849 RNA pseudouridylate synthase TP_RS02310 PF02390 Putative methyltransferase TP_RS02340 PF02151 UvrB/uvrC motif TP_RS02340 PF08459 UvrC Helix-hairpin-helix N-terminal TP_RS02340 PF01541 GIY-YIG catalytic domain TP_RS02350 PF01709 Transcriptional regulator TP_RS02355 PF00342 Phosphoglucose isomerase TP_RS02360 PF00871 Acetokinase family TP_RS02365 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TP_RS02370 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TP_RS02370 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TP_RS02400 PF04773 FecR protein TP_RS02405 PF00211 Adenylate and Guanylate cyclase catalytic domain TP_RS02405 PF00072 Response regulator receiver domain TP_RS02420 PF00672 HAMP domain TP_RS02420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_RS02445 PF02618 YceG-like family TP_RS02450 PF08275 DNA primase catalytic core, N-terminal domain TP_RS02450 PF01807 CHC2 zinc finger TP_RS02455 PF03979 Sigma-70 factor, region 1.1 TP_RS02455 PF00140 Sigma-70 factor, region 1.2 TP_RS02455 PF04542 Sigma-70 region 2 TP_RS02455 PF04539 Sigma-70 region 3 TP_RS02455 PF04545 Sigma-70, region 4 TP_RS02485 PF00905 Penicillin binding protein transpeptidase domain TP_RS02485 PF03717 Penicillin-binding Protein dimerisation domain TP_RS02490 PF01098 Cell cycle protein TP_RS02495 PF12796 Ankyrin repeats (3 copies) TP_RS02525 PF05698 Bacterial trigger factor protein (TF) C-terminus TP_RS02525 PF05697 Bacterial trigger factor protein (TF) TP_RS02530 PF00574 Clp protease TP_RS02535 PF07724 AAA domain (Cdc48 subfamily) TP_RS02535 PF10431 C-terminal, D2-small domain, of ClpB protein TP_RS02535 PF06689 ClpX C4-type zinc finger TP_RS02540 PF00578 AhpC/TSA family TP_RS02545 PF14492 Elongation Factor G, domain II TP_RS02545 PF00009 Elongation factor Tu GTP binding domain TP_RS02545 PF03144 Elongation factor Tu domain 2 TP_RS02545 PF06421 GTP-binding protein LepA C-terminus TP_RS02545 PF00679 Elongation factor G C-terminus TP_RS02550 PF02559 CarD-like/TRCF domain TP_RS02555 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TP_RS02555 PF02542 YgbB family TP_RS02565 PF17760 UvrA interaction domain TP_RS02565 PF00005 ABC transporter TP_RS02565 PF17755 UvrA DNA-binding domain TP_RS02575 PF03023 Lipid II flippase MurJ TP_RS02580 PF02075 Crossover junction endodeoxyribonuclease RuvC TP_RS02590 PF00072 Response regulator receiver domain TP_RS02590 PF02954 Bacterial regulatory protein, Fis family TP_RS02590 PF00158 Sigma-54 interaction domain TP_RS02600 PF09115 DNA polymerase III, delta subunit, C terminal TP_RS02605 PF02674 Colicin V production protein TP_RS02610 PF04101 Glycosyltransferase family 28 C-terminal domain TP_RS02610 PF03033 Glycosyltransferase family 28 N-terminal domain TP_RS02615 PF00004 ATPase family associated with various cellular activities (AAA) TP_RS02615 PF05362 Lon protease (S16) C-terminal proteolytic domain TP_RS02615 PF02190 ATP-dependent protease La (LON) substrate-binding domain TP_RS02620 PF09285 Elongation factor P, C-terminal TP_RS02620 PF08207 Elongation factor P (EF-P) KOW-like domain TP_RS02620 PF01132 Elongation factor P (EF-P) OB domain TP_RS02630 PF00271 Helicase conserved C-terminal domain TP_RS02630 PF00270 DEAD/DEAH box helicase TP_RS02630 PF04408 Helicase associated domain (HA2) TP_RS02630 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TP_RS02635 PF01813 ATP synthase subunit D TP_RS02640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_RS02640 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_RS02645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_RS02645 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_RS02645 PF16886 ATPsynthase alpha/beta subunit N-term extension TP_RS02660 PF00137 ATP synthase subunit C TP_RS02670 PF01496 V-type ATPase 116kDa subunit family TP_RS02675 PF01992 ATP synthase (C/AC39) subunit TP_RS02685 PF03840 Preprotein translocase SecG subunit TP_RS02690 PF00121 Triosephosphate isomerase TP_RS02695 PF00162 Phosphoglycerate kinase TP_RS02710 PF01740 STAS domain TP_RS02715 PF07650 KH domain TP_RS02715 PF01926 50S ribosome-binding GTPase TP_RS02720 PF00365 Phosphofructokinase TP_RS02725 PF01330 RuvA N terminal domain TP_RS02735 PF13407 Periplasmic binding protein domain TP_RS02740 PF13180 PDZ domain TP_RS02745 PF02401 LytB protein TP_RS02755 PF03687 Uncharacterised protein family (UPF0164) TP_RS02760 PF17871 AAA lid domain TP_RS02760 PF10431 C-terminal, D2-small domain, of ClpB protein TP_RS02760 PF02861 Clp amino terminal domain, pathogenicity island component TP_RS02760 PF00004 ATPase family associated with various cellular activities (AAA) TP_RS02760 PF07724 AAA domain (Cdc48 subfamily) TP_RS02765 PF10396 GTP-binding protein TrmE N-terminus TP_RS02765 PF12631 MnmE helical domain TP_RS02765 PF01926 50S ribosome-binding GTPase TP_RS02785 PF01594 AI-2E family transporter TP_RS02790 PF13419 Haloacid dehalogenase-like hydrolase TP_RS02800 PF03590 Aspartate-ammonia ligase TP_RS02815 PF02568 Thiamine biosynthesis protein (ThiI) TP_RS02815 PF02926 THUMP domain TP_RS02820 PF02779 Transketolase, pyrimidine binding domain TP_RS02820 PF00456 Transketolase, thiamine diphosphate binding domain TP_RS02825 PF04536 TPM domain TP_RS02830 PF08666 SAF domain TP_RS02830 PF03102 NeuB family TP_RS02835 PF00226 DnaJ domain TP_RS02855 PF03062 MBOAT, membrane-bound O-acyltransferase family TP_RS02865 PF01081 KDPG and KHG aldolase TP_RS02870 PF01321 Creatinase/Prolidase N-terminal domain TP_RS02870 PF00557 Metallopeptidase family M24 TP_RS02885 PF04205 FMN-binding domain TP_RS02885 PF01794 Ferric reductase like transmembrane component TP_RS02890 PF14889 Penicillin-binding protein Tp47 domain a TP_RS02890 PF14888 Penicillin-binding protein Tp47 domain C TP_RS02900 PF03462 PCRF domain TP_RS02900 PF00472 RF-1 domain TP_RS02910 PF00448 SRP54-type protein, GTPase domain TP_RS02910 PF02881 SRP54-type protein, helical bundle domain TP_RS02920 PF02687 FtsX-like permease family TP_RS02920 PF12704 MacB-like periplasmic core domain TP_RS02925 PF00005 ABC transporter TP_RS02930 PF12704 MacB-like periplasmic core domain TP_RS02930 PF02687 FtsX-like permease family TP_RS02940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TP_RS02945 PF09334 tRNA synthetases class I (M) TP_RS02945 PF08264 Anticodon-binding domain of tRNA TP_RS02945 PF13603 Leucyl-tRNA synthetase, Domain 2 TP_RS02960 PF00381 PTS HPr component phosphorylation site TP_RS02965 PF07475 HPr Serine kinase C-terminal domain TP_RS02965 PF02603 HPr Serine kinase N terminus TP_RS03005 PF05191 Adenylate kinase, active site lid TP_RS03010 PF12627 Probable RNA and SrmB- binding site of polymerase A TP_RS03010 PF12626 Polymerase A arginine-rich C-terminus TP_RS03010 PF01743 Poly A polymerase head domain TP_RS03025 PF14353 CpXC protein TP_RS03030 PF17820 PDZ domain TP_RS03030 PF02163 Peptidase family M50 TP_RS03035 PF13288 DXP reductoisomerase C-terminal domain TP_RS03035 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TP_RS03035 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TP_RS03045 PF01255 Putative undecaprenyl diphosphate synthase TP_RS03050 PF01765 Ribosome recycling factor TP_RS03055 PF00889 Elongation factor TS TP_RS03060 PF00318 Ribosomal protein S2 TP_RS03080 PF00152 tRNA synthetases class II (D, K and N) TP_RS03080 PF01336 OB-fold nucleic acid binding domain TP_RS03090 PF00005 ABC transporter TP_RS03095 PF01458 Uncharacterized protein family (UPF0051) TP_RS03100 PF01458 Uncharacterized protein family (UPF0051) TP_RS03105 PF00266 Aminotransferase class-V TP_RS03115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TP_RS03120 PF10895 Domain of unknown function (DUF2715) TP_RS03130 PF10895 Domain of unknown function (DUF2715) TP_RS03150 PF01464 Transglycosylase SLT domain TP_RS03150 PF01476 LysM domain TP_RS03165 PF00149 Calcineurin-like phosphoesterase TP_RS03165 PF12320 Type 5 capsule protein repressor C-terminal domain TP_RS03170 PF13476 AAA domain TP_RS03175 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TP_RS03175 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TP_RS03175 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TP_RS03185 PF03705 CheR methyltransferase, all-alpha domain TP_RS03185 PF01739 CheR methyltransferase, SAM binding domain TP_RS03190 PF01339 CheB methylesterase TP_RS03190 PF00072 Response regulator receiver domain TP_RS03195 PF00579 tRNA synthetases class I (W and Y) TP_RS03200 PF01641 SelR domain TP_RS03200 PF01625 Peptide methionine sulfoxide reductase TP_RS03205 PF01653 NAD-dependent DNA ligase adenylation domain TP_RS03205 PF00533 BRCA1 C Terminus (BRCT) domain TP_RS03205 PF03120 NAD-dependent DNA ligase OB-fold domain TP_RS03240 PF17202 Single cache domain 3 TP_RS03240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_RS03240 PF00672 HAMP domain TP_RS03245 PF00672 HAMP domain TP_RS03245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_RS03250 PF13393 Histidyl-tRNA synthetase TP_RS03255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TP_RS03255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP_RS03255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP_RS03255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP_RS03260 PF00929 Exonuclease TP_RS03265 PF01921 tRNA synthetases class I (K) TP_RS03275 PF02403 Seryl-tRNA synthetase N-terminal domain TP_RS03275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP_RS03285 PF00571 CBS domain TP_RS03285 PF03471 Transporter associated domain TP_RS03290 PF02130 Uncharacterized protein family UPF0054 TP_RS03295 PF01966 HD domain TP_RS03295 PF07698 7TM receptor with intracellular HD hydrolase TP_RS03295 PF07697 7TM-HD extracellular TP_RS03300 PF00005 ABC transporter TP_RS03300 PF08402 TOBE domain TP_RS03305 PF00528 Binding-protein-dependent transport system inner membrane component TP_RS03310 PF00528 Binding-protein-dependent transport system inner membrane component TP_RS03315 PF13416 Bacterial extracellular solute-binding protein TP_RS03320 PF02599 Global regulator protein family TP_RS03325 PF02623 FliW protein TP_RS03335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_RS03335 PF07196 Flagellin hook IN motif TP_RS03345 PF01116 Fructose-bisphosphate aldolase class-II TP_RS03350 PF04620 Flagellar filament outer layer protein Flaa TP_RS03370 PF00485 Phosphoribulokinase / Uridine kinase family TP_RS03385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TP_RS03385 PF14579 Helix-hairpin-helix motif TP_RS03385 PF02811 PHP domain TP_RS03385 PF07733 Bacterial DNA polymerase III alpha NTPase domain TP_RS03405 PF03129 Anticodon binding domain TP_RS03410 PF00749 tRNA synthetases class I (E and Q), catalytic domain TP_RS03415 PF01713 Smr domain TP_RS03420 PF01963 TraB family TP_RS03450 PF00814 Glycoprotease family TP_RS03455 PF00842 Alanine racemase, C-terminal domain TP_RS03455 PF01168 Alanine racemase, N-terminal domain TP_RS03460 PF01728 FtsJ-like methyltransferase TP_RS03465 PF00348 Polyprenyl synthetase TP_RS03470 PF13407 Periplasmic binding protein domain TP_RS03470 PF18610 Periplasmic binding protein domain TP_RS03475 PF00005 ABC transporter TP_RS03480 PF02653 Branched-chain amino acid transport system / permease component TP_RS03485 PF00270 DEAD/DEAH box helicase TP_RS03485 PF17191 RecG wedge domain TP_RS03485 PF00271 Helicase conserved C-terminal domain TP_RS03490 PF17676 LD-carboxypeptidase C-terminal domain TP_RS03490 PF02016 LD-carboxypeptidase N-terminal domain TP_RS03495 PF01926 50S ribosome-binding GTPase TP_RS03495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TP_RS03505 PF02616 Segregation and condensation protein ScpA TP_RS03510 PF00154 recA bacterial DNA recombination protein TP_RS03530 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TP_RS03530 PF02843 Phosphoribosylglycinamide synthetase, C domain TP_RS03530 PF02844 Phosphoribosylglycinamide synthetase, N domain TP_RS03545 PF10895 Domain of unknown function (DUF2715) TP_RS03555 PF01192 RNA polymerase Rpb6 TP_RS03570 PF01368 DHH family TP_RS03570 PF17768 RecJ OB domain TP_RS03570 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TP_RS03570 PF02272 DHHA1 domain TP_RS03575 PF00912 Transglycosylase TP_RS03575 PF00905 Penicillin binding protein transpeptidase domain TP_RS03575 PF17092 Penicillin-binding protein OB-like domain TP_RS03580 PF01464 Transglycosylase SLT domain TP_RS03580 PF10145 Phage-related minor tail protein TP_RS03580 PF01551 Peptidase family M23 TP_RS03595 PF04545 Sigma-70, region 4 TP_RS03595 PF04539 Sigma-70 region 3 TP_RS03595 PF04542 Sigma-70 region 2 TP_RS03610 PF10609 NUBPL iron-transfer P-loop NTPase TP_RS03615 PF00448 SRP54-type protein, GTPase domain TP_RS03620 PF00771 FHIPEP family TP_RS03625 PF01312 FlhB HrpN YscU SpaS Family TP_RS03630 PF01311 Bacterial export proteins, family 1 TP_RS03635 PF01313 Bacterial export proteins, family 3 TP_RS03640 PF00813 FliP family TP_RS03650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TP_RS03650 PF04509 CheC-like family TP_RS03655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TP_RS03655 PF02154 Flagellar motor switch protein FliM TP_RS03660 PF03748 Flagellar basal body-associated protein FliL TP_RS03665 PF13677 Membrane MotB of proton-channel complex MotA/MotB TP_RS03665 PF00691 OmpA family TP_RS03670 PF01618 MotA/TolQ/ExbB proton channel family TP_RS03680 PF07559 Flagellar basal body protein FlaE TP_RS03680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_RS03680 PF00460 Flagella basal body rod protein TP_RS03685 PF03963 Flagellar hook capping protein - N-terminal region TP_RS03705 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TP_RS03705 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TP_RS03710 PF13505 Outer membrane protein beta-barrel domain TP_RS03715 PF01048 Phosphorylase superfamily TP_RS03720 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP_RS03720 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TP_RS03725 PF00970 Oxidoreductase FAD-binding domain TP_RS03725 PF00175 Oxidoreductase NAD-binding domain TP_RS03725 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TP_RS03750 PF01467 Cytidylyltransferase-like TP_RS03755 PF01018 GTP1/OBG TP_RS03755 PF01926 50S ribosome-binding GTPase TP_RS03760 PF01016 Ribosomal L27 protein TP_RS03770 PF00829 Ribosomal prokaryotic L21 protein TP_RS03775 PF00391 PEP-utilising enzyme, mobile domain TP_RS03775 PF02896 PEP-utilising enzyme, TIM barrel domain TP_RS03790 PF13519 von Willebrand factor type A domain TP_RS03795 PF18663 Pallilysin beta barrel domain TP_RS03810 PF01938 TRAM domain TP_RS03810 PF00919 Uncharacterized protein family UPF0004 TP_RS03810 PF04055 Radical SAM superfamily TP_RS03815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TP_RS03815 PF00391 PEP-utilising enzyme, mobile domain TP_RS03815 PF02896 PEP-utilising enzyme, TIM barrel domain TP_RS03815 PF05524 PEP-utilising enzyme, N-terminal TP_RS03815 PF00381 PTS HPr component phosphorylation site TP_RS03820 PF02911 Formyl transferase, C-terminal domain TP_RS03820 PF00551 Formyl transferase TP_RS03825 PF01327 Polypeptide deformylase TP_RS03830 PF01165 Ribosomal protein S21 TP_RS03835 PF00905 Penicillin binding protein transpeptidase domain TP_RS03835 PF03717 Penicillin-binding Protein dimerisation domain TP_RS03835 PF03793 PASTA domain TP_RS03860 PF01434 Peptidase family M41 TP_RS03860 PF00004 ATPase family associated with various cellular activities (AAA) TP_RS03860 PF17862 AAA+ lid domain TP_RS03870 PF00679 Elongation factor G C-terminus TP_RS03870 PF00009 Elongation factor Tu GTP binding domain TP_RS03870 PF03764 Elongation factor G, domain IV TP_RS03870 PF14492 Elongation Factor G, domain II TP_RS03870 PF03144 Elongation factor Tu domain 2 TP_RS03885 PF00271 Helicase conserved C-terminal domain TP_RS03885 PF00270 DEAD/DEAH box helicase TP_RS03890 PF02690 Na+/Pi-cotransporter TP_RS03915 PF02308 MgtC family TP_RS03920 PF00730 HhH-GPD superfamily base excision DNA repair protein TP_RS03935 PF03819 MazG nucleotide pyrophosphohydrolase domain TP_RS03940 PF09335 SNARE associated Golgi protein TP_RS03945 PF02540 NAD synthase TP_RS03975 PF00005 ABC transporter TP_RS03975 PF12399 Branched-chain amino acid ATP-binding cassette transporter TP_RS03990 PF17131 Outer membrane lipoprotein-sorting protein TP_RS04005 PF00700 Bacterial flagellin C-terminal helical region TP_RS04005 PF00669 Bacterial flagellin N-terminal helical region TP_RS04015 PF00438 S-adenosylmethionine synthetase, N-terminal domain TP_RS04015 PF02772 S-adenosylmethionine synthetase, central domain TP_RS04015 PF02773 S-adenosylmethionine synthetase, C-terminal domain TP_RS04020 PF02424 ApbE family TP_RS04025 PF14748 Pyrroline-5-carboxylate reductase dimerisation TP_RS04025 PF03807 NADP oxidoreductase coenzyme F420-dependent TP_RS04030 PF01588 Putative tRNA binding domain TP_RS04030 PF09334 tRNA synthetases class I (M) TP_RS04035 PF00768 D-alanyl-D-alanine carboxypeptidase TP_RS04035 PF07943 Penicillin-binding protein 5, C-terminal domain TP_RS04040 PF10431 C-terminal, D2-small domain, of ClpB protein TP_RS04040 PF02861 Clp amino terminal domain, pathogenicity island component TP_RS04040 PF17871 AAA lid domain TP_RS04040 PF07724 AAA domain (Cdc48 subfamily) TP_RS04040 PF00004 ATPase family associated with various cellular activities (AAA) TP_RS04055 PF00773 RNB domain TP_RS04065 PF01783 Ribosomal L32p protein family TP_RS04070 PF00550 Phosphopantetheine attachment site TP_RS04075 PF00035 Double-stranded RNA binding motif TP_RS04075 PF14622 Ribonuclease-III-like TP_RS04080 PF02086 D12 class N6 adenine-specific DNA methyltransferase TP_RS04095 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP_RS04110 PF00113 Enolase, C-terminal TIM barrel domain TP_RS04110 PF03952 Enolase, N-terminal domain TP_RS04115 PF00753 Metallo-beta-lactamase superfamily TP_RS04115 PF12706 Beta-lactamase superfamily domain TP_RS04125 PF03180 NLPA lipoprotein TP_RS04130 PF00924 Mechanosensitive ion channel TP_RS04130 PF05552 Conserved TM helix TP_RS04135 PF01880 Desulfoferrodoxin TP_RS04140 PF02780 Transketolase, C-terminal domain TP_RS04140 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TP_RS04140 PF02779 Transketolase, pyrimidine binding domain TP_RS04150 PF02457 DisA bacterial checkpoint controller nucleotide-binding TP_RS04160 PF01648 4'-phosphopantetheinyl transferase superfamily TP_RS04165 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) TP_RS04170 PF01416 tRNA pseudouridine synthase TP_RS04175 PF05746 DALR anticodon binding domain TP_RS04175 PF00750 tRNA synthetases class I (R) TP_RS04175 PF03485 Arginyl tRNA synthetase N terminal domain TP_RS04190 PF00579 tRNA synthetases class I (W and Y) TP_RS04205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TP_RS04205 PF03129 Anticodon binding domain TP_RS04205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP_RS04210 PF12848 ABC transporter TP_RS04210 PF00005 ABC transporter TP_RS04215 PF13349 Putative adhesin TP_RS04225 PF00595 PDZ domain TP_RS04230 PF00557 Metallopeptidase family M24 TP_RS04235 PF00684 DnaJ central domain TP_RS04235 PF00226 DnaJ domain TP_RS04235 PF01556 DnaJ C terminal domain TP_RS04240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TP_RS04240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TP_RS04245 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TP_RS04250 PF05164 Cell division protein ZapA TP_RS04260 PF00453 Ribosomal protein L20 TP_RS04265 PF01632 Ribosomal protein L35 TP_RS04270 PF00707 Translation initiation factor IF-3, C-terminal domain TP_RS04270 PF05198 Translation initiation factor IF-3, N-terminal domain TP_RS04275 PF16314 Domain of unknown function (DUF4954) TP_RS04280 PF01790 Prolipoprotein diacylglyceryl transferase TP_RS04285 PF10609 NUBPL iron-transfer P-loop NTPase TP_RS04300 PF03687 Uncharacterised protein family (UPF0164) TP_RS04310 PF03687 Uncharacterised protein family (UPF0164) TP_RS04320 PF01380 SIS domain TP_RS04325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP_RS04325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TP_RS04330 PF00266 Aminotransferase class-V TP_RS04335 PF01476 LysM domain TP_RS04335 PF05257 CHAP domain TP_RS04340 PF03687 Uncharacterised protein family (UPF0164) TP_RS04355 PF00669 Bacterial flagellin N-terminal helical region TP_RS04355 PF00700 Bacterial flagellin C-terminal helical region TP_RS04365 PF00700 Bacterial flagellin C-terminal helical region TP_RS04365 PF00669 Bacterial flagellin N-terminal helical region TP_RS04370 PF07195 Flagellar hook-associated protein 2 C-terminus TP_RS04370 PF02465 Flagellar hook-associated protein 2 N-terminus TP_RS04385 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TP_RS04390 PF00814 Glycoprotease family TP_RS04395 PF01966 HD domain TP_RS04395 PF00672 HAMP domain TP_RS04400 PF14238 Domain of unknown function (DUF4340) TP_RS04415 PF00005 ABC transporter TP_RS04435 PF00692 dUTPase TP_RS04440 PF00575 S1 RNA binding domain TP_RS04440 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TP_RS04440 PF03725 3' exoribonuclease family, domain 2 TP_RS04440 PF00013 KH domain TP_RS04440 PF01138 3' exoribonuclease family, domain 1 TP_RS04445 PF00312 Ribosomal protein S15 TP_RS04455 PF01509 TruB family pseudouridylate synthase (N terminal domain) TP_RS04455 PF16198 tRNA pseudouridylate synthase B C-terminal domain TP_RS04460 PF02033 Ribosome-binding factor A TP_RS04465 PF04760 Translation initiation factor IF-2, N-terminal region TP_RS04465 PF00009 Elongation factor Tu GTP binding domain TP_RS04465 PF11987 Translation-initiation factor 2 TP_RS04470 PF08529 NusA N-terminal domain TP_RS04470 PF00575 S1 RNA binding domain TP_RS04470 PF13184 NusA-like KH domain TP_RS04475 PF02576 RimP N-terminal domain TP_RS04475 PF17384 RimP C-terminal SH3 domain TP_RS04495 PF12705 PD-(D/E)XK nuclease superfamily TP_RS04495 PF00580 UvrD/REP helicase N-terminal domain TP_RS04495 PF13361 UvrD-like helicase C-terminal domain TP_RS04505 PF01554 MatE TP_RS04515 PF02875 Mur ligase family, glutamate ligase domain TP_RS04515 PF08245 Mur ligase middle domain TP_RS04520 PF00886 Ribosomal protein S16 TP_RS04530 PF01782 RimM N-terminal domain TP_RS04535 PF01746 tRNA (Guanine-1)-methyltransferase TP_RS04540 PF01245 Ribosomal protein L19 TP_RS04550 PF01312 FlhB HrpN YscU SpaS Family TP_RS04555 PF11871 Domain of unknown function (DUF3391) TP_RS04555 PF01966 HD domain TP_RS04560 PF02021 Uncharacterised protein family UPF0102 TP_RS04580 PF03448 MgtE intracellular N domain TP_RS04580 PF01769 Divalent cation transporter TP_RS04580 PF00571 CBS domain TP_RS04590 PF00085 Thioredoxin TP_RS04600 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP_RS04600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TP_RS04610 PF08308 PEGA domain TP_RS04620 PF16921 Tex protein YqgF-like domain TP_RS04620 PF17674 HHH domain TP_RS04620 PF09371 Tex-like protein N-terminal domain TP_RS04620 PF00575 S1 RNA binding domain TP_RS04630 PF00258 Flavodoxin TP_RS04635 PF10502 Signal peptidase, peptidase S26 TP_RS04660 PF01973 Protein of unknown function DUF115 TP_RS04665 PF01204 Trehalase TP_RS04670 PF02875 Mur ligase family, glutamate ligase domain TP_RS04670 PF01225 Mur ligase family, catalytic domain TP_RS04670 PF08245 Mur ligase middle domain TP_RS04680 PF07859 alpha/beta hydrolase fold TP_RS04690 PF01595 Cyclin M transmembrane N-terminal domain TP_RS04690 PF00571 CBS domain TP_RS04690 PF03471 Transporter associated domain TP_RS04705 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TP_RS04705 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TP_RS04705 PF10371 Domain of unknown function TP_RS04705 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TP_RS04705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP_RS04730 PF00834 Ribulose-phosphate 3 epimerase family TP_RS04735 PF02527 rRNA small subunit methyltransferase G TP_RS04740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TP_RS04745 PF01424 R3H domain TP_RS04745 PF14804 Jag N-terminus TP_RS04750 PF14849 YidC periplasmic domain TP_RS04750 PF02096 60Kd inner membrane protein TP_RS04755 PF01809 Putative membrane protein insertion efficiency factor TP_RS04790 PF16811 TRAP transporter T-component TP_RS04800 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TP_RS04800 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TP_RS04805 PF10135 Rod binding protein TP_RS04810 PF00460 Flagella basal body rod protein TP_RS04810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_RS04815 PF00460 Flagella basal body rod protein TP_RS04815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_RS04820 PF02687 FtsX-like permease family TP_RS04820 PF12704 MacB-like periplasmic core domain TP_RS04820 PF00005 ABC transporter TP_RS04825 PF00005 ABC transporter TP_RS04825 PF12704 MacB-like periplasmic core domain TP_RS04825 PF02687 FtsX-like permease family TP_RS04830 PF00005 ABC transporter TP_RS04835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP_RS04860 PF10634 Fe2+ transport protein TP_RS04865 PF03239 Iron permease FTR1 family TP_RS04870 PF01409 tRNA synthetases class II core domain (F) TP_RS04880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_RS04890 PF01784 NIF3 (NGG1p interacting factor 3) TP_RS04895 PF01252 Signal peptidase (SPase) II TP_RS04900 PF01026 TatD related DNase TP_RS04905 PF01207 Dihydrouridine synthase (Dus) TP_RS04910 PF00072 Response regulator receiver domain TP_RS04910 PF00990 Diguanylate cyclase, GGDEF domain TP_RS04925 PF00183 Hsp90 protein TP_RS04930 PF02938 GAD domain TP_RS04930 PF01336 OB-fold nucleic acid binding domain TP_RS04930 PF00152 tRNA synthetases class II (D, K and N) TP_RS04935 PF00892 EamA-like transporter family TP_RS04945 PF01914 MarC family integral membrane protein TP_RS04960 PF00301 Rubredoxin TP_RS04970 PF03330 Lytic transglycolase TP_RS04980 PF01026 TatD related DNase TP_RS05000 PF01343 Peptidase family S49 TP_RS05005 PF01235 Sodium:alanine symporter family TP_RS05010 PF17854 FtsK alpha domain TP_RS05010 PF09397 Ftsk gamma domain TP_RS05010 PF01580 FtsK/SpoIIIE family TP_RS05035 PF13662 Toprim domain TP_RS05040 PF12169 DNA polymerase III subunits gamma and tau domain III TP_RS05045 PF00986 DNA gyrase B subunit, carboxyl terminus TP_RS05045 PF00204 DNA gyrase B TP_RS05045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP_RS05045 PF01751 Toprim domain TP_RS05050 PF02511 Thymidylate synthase complementing protein TP_RS05055 PF03477 ATP cone domain TP_RS05055 PF02867 Ribonucleotide reductase, barrel domain TP_RS05055 PF00317 Ribonucleotide reductase, all-alpha domain TP_RS05060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TP_RS05060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TP_RS05065 PF00334 Nucleoside diphosphate kinase TP_RS05070 PF01195 Peptidyl-tRNA hydrolase TP_RS05075 PF03979 Sigma-70 factor, region 1.1 TP_RS05075 PF00140 Sigma-70 factor, region 1.2 TP_RS05075 PF04542 Sigma-70 region 2 TP_RS05075 PF04539 Sigma-70 region 3 TP_RS05075 PF04545 Sigma-70, region 4 TP_RS05080 PF00166 Chaperonin 10 Kd subunit TP_RS05090 PF01029 NusB family TP_RS05095 PF13145 PPIC-type PPIASE domain TP_RS05100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TP_RS05100 PF01411 tRNA synthetases class II (A) TP_RS05110 PF12072 Domain of unknown function (DUF3552) TP_RS05110 PF00013 KH domain TP_RS05110 PF01966 HD domain TP_RS05120 PF01425 Amidase TP_RS05125 PF02637 GatB domain TP_RS05125 PF02934 GatB/GatE catalytic domain TP_RS05130 PF06745 KaiC TP_RS05130 PF18073 Rubredoxin metal binding domain TP_RS05135 PF02631 RecX family TP_RS05140 PF00380 Ribosomal protein S9/S16 TP_RS05145 PF00572 Ribosomal protein L13 TP_RS05165 PF01048 Phosphorylase superfamily TP_RS05170 PF13361 UvrD-like helicase C-terminal domain TP_RS05170 PF00580 UvrD/REP helicase N-terminal domain TP_RS05175 PF03880 DbpA RNA binding domain TP_RS05190 PF07009 NusG domain II TP_RS05195 PF01734 Patatin-like phospholipase TP_RS05200 PF01699 Sodium/calcium exchanger protein TP_RS05205 PF08264 Anticodon-binding domain of tRNA TP_RS05205 PF00133 tRNA synthetases class I (I, L, M and V) TP_RS05205 PF10458 Valyl tRNA synthetase tRNA binding arm TP_RS05210 PF00403 Heavy-metal-associated domain TP_RS05215 PF03006 Haemolysin-III related TP_RS05220 PF00210 Ferritin-like domain TP_RS05225 PF00156 Phosphoribosyl transferase domain TP_RS05230 PF00152 tRNA synthetases class II (D, K and N) TP_RS05235 PF00574 Clp protease TP_RS05245 PF10895 Domain of unknown function (DUF2715)