TP_RS00005	SM00382	ATPases associated with a variety of cellular activities
TP_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
TP_RS00010	SM00480	DNA polymerase III beta subunit
TP_RS00025	SM00434	DNA Topoisomerase IV
TP_RS00065	SM00873	B3/4 domain
TP_RS00065	SM00874	tRNA synthetase B5 domain
TP_RS00075	SM00028	Tetratricopeptide repeats
TP_RS00090	SM00327	von Willebrand factor (vWF) type A domain
TP_RS00140	SM01264	TP_RS00140
TP_RS00150	SM01091	Transporter associated domain
TP_RS00155	SM01091	Transporter associated domain
TP_RS00190	SM00382	ATPases associated with a variety of cellular activities
TP_RS00215	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TP_RS00220	SM00257	Lysin motif
TP_RS00230	SM01228	TP_RS00230
TP_RS00265	SM00937	TP_RS00265
TP_RS00280	SM00967	RNA 2'-O ribose methyltransferase substrate binding
TP_RS00340	SM00028	Tetratricopeptide repeats
TP_RS00360	SM00382	ATPases associated with a variety of cellular activities
TP_RS00360	SM01086	C-terminal, D2-small domain, of ClpB protein
TP_RS00400	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
TP_RS00415	SM00382	ATPases associated with a variety of cellular activities
TP_RS00450	SM00100	Cyclic nucleotide-monophosphate binding domain
TP_RS00460	SM00840	TP_RS00460
TP_RS00480	SM00028	Tetratricopeptide repeats
TP_RS00490	SM00316	Ribosomal protein S1-like RNA-binding domain
TP_RS00495	SM00271	DnaJ molecular chaperone homology domain
TP_RS00520	SM00487	DEAD-like helicases superfamily
TP_RS00520	SM00490	helicase superfamily c-terminal domain
TP_RS00530	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
TP_RS00530	SM00474	3'-5' exonuclease
TP_RS00530	SM00475	5'-3' exonuclease
TP_RS00530	SM00479	TP_RS00530
TP_RS00530	SM00482	DNA polymerase A domain
TP_RS00585	SM00244	prohibitin homologues
TP_RS00590	SM00244	prohibitin homologues
TP_RS00600	SM00487	DEAD-like helicases superfamily
TP_RS00600	SM00490	helicase superfamily c-terminal domain
TP_RS00620	SM00382	ATPases associated with a variety of cellular activities
TP_RS00735	SM00382	ATPases associated with a variety of cellular activities
TP_RS00805	SM00363	S4 RNA-binding domain
TP_RS00810	SM00257	Lysin motif
TP_RS00820	SM00563	Phosphate acyltransferases
TP_RS00840	SM00382	ATPases associated with a variety of cellular activities
TP_RS00850	SM00382	ATPases associated with a variety of cellular activities
TP_RS00865	SM00529	Helix-turn-helix diphteria tox regulatory element
TP_RS00870	SM00855	Phosphoglycerate mutase family
TP_RS00885	SM00900	TP_RS00885
TP_RS00950	SM00729	Elongator protein 3, MiaB family, Radical SAM
TP_RS00960	SM01403	TP_RS00960
TP_RS00980	SM01382	TP_RS00980
TP_RS00980	SM01383	TP_RS00980
TP_RS00995	SM00322	K homology RNA-binding domain
TP_RS01015	SM01374	TP_RS01015
TP_RS01020	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TP_RS01075	SM00662	RNA polymerases D
TP_RS01105	SM00331	Sigma factor PP2C-like phosphatases
TP_RS01110	SM00331	Sigma factor PP2C-like phosphatases
TP_RS01165	SM00382	ATPases associated with a variety of cellular activities
TP_RS01175	SM00986	Uracil DNA glycosylase superfamily
TP_RS01175	SM00987	UreE urease accessory protein, C-terminal domain 
TP_RS01180	SM00487	DEAD-like helicases superfamily
TP_RS01180	SM00490	helicase superfamily c-terminal domain
TP_RS01215	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
TP_RS01215	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TP_RS01220	SM00649	Ribosomal protein L11/L12
TP_RS01245	SM00663	RNA polymerase I subunit A N-terminus
TP_RS01265	SM00327	von Willebrand factor (vWF) type A domain
TP_RS01270	SM00646	TP_RS01270
TP_RS01285	SM00411	bacterial (prokaryotic) histone like domain
TP_RS01300	SM00357	Cold shock protein domain
TP_RS01300	SM00382	ATPases associated with a variety of cellular activities
TP_RS01300	SM00959	Rho termination factor, N-terminal domain
TP_RS01335	SM00028	Tetratricopeptide repeats
TP_RS01340	SM00100	Cyclic nucleotide-monophosphate binding domain
TP_RS01345	SM00060	Fibronectin type 3 domain
TP_RS01350	SM01133	TP_RS01350
TP_RS01385	SM00028	Tetratricopeptide repeats
TP_RS01390	SM00729	Elongator protein 3, MiaB family, Radical SAM
TP_RS01400	SM00470	ParB-like nuclease domain
TP_RS01430	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TP_RS01430	SM00245	tail specific protease
TP_RS01435	SM00316	Ribosomal protein S1-like RNA-binding domain
TP_RS01485	SM01400	TP_RS01485
TP_RS01530	SM00853	MutL C terminal dimerisation domain
TP_RS01530	SM01340	TP_RS01530
TP_RS01545	SM00363	S4 RNA-binding domain
TP_RS01545	SM01390	TP_RS01545
TP_RS01550	SM00740	TP_RS01550
TP_RS01555	SM00062	Bacterial periplasmic substrate-binding proteins
TP_RS01560	SM00062	Bacterial periplasmic substrate-binding proteins
TP_RS01600	SM00382	ATPases associated with a variety of cellular activities
TP_RS01630	SM00935	Outer membrane protein (OmpH-like)
TP_RS01635	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
TP_RS01635	SM00534	ATPase domain of DNA mismatch repair MUTS family
TP_RS01655	SM00382	ATPases associated with a variety of cellular activities
TP_RS01665	SM01350	TP_RS01665
TP_RS01675	SM00530	Helix-turn-helix XRE-family like proteins 
TP_RS01690	SM00650	Ribosomal RNA adenine dimethylases
TP_RS01700	SM00363	S4 RNA-binding domain
TP_RS01720	SM00478	endonuclease III
TP_RS01725	SM00487	DEAD-like helicases superfamily
TP_RS01725	SM00490	helicase superfamily c-terminal domain
TP_RS01725	SM00982	TP_RS01725
TP_RS01725	SM01058	CarD-like/TRCF domain
TP_RS01780	SM00360	RNA recognition motif
TP_RS01800	SM00563	Phosphate acyltransferases
TP_RS01815	SM00073	Histidine Phosphotransfer domain
TP_RS01815	SM00260	Two component signalling adaptor domain
TP_RS01815	SM00387	Histidine kinase-like ATPases
TP_RS01815	SM01231	TP_RS01815
TP_RS01820	SM00138	Methyltransferase, chemotaxis proteins 
TP_RS01820	SM00260	Two component signalling adaptor domain
TP_RS01830	SM00448	cheY-homologous receiver domain
TP_RS01900	SM00957	SecA DEAD-like domain
TP_RS01900	SM00958	SecA preprotein cross-linking domain
TP_RS01905	SM00487	DEAD-like helicases superfamily
TP_RS01905	SM00490	helicase superfamily c-terminal domain
TP_RS01945	SM00842	Cell division protein FtsA
TP_RS01950	SM00864	Tubulin/FtsZ family, GTPase domain
TP_RS01950	SM00865	Tubulin/FtsZ family, C-terminal domain
TP_RS01960	SM00028	Tetratricopeptide repeats
TP_RS01970	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
TP_RS01970	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
TP_RS01970	SM00493	TP_RS01970
TP_RS02010	SM00382	ATPases associated with a variety of cellular activities
TP_RS02045	SM01323	TP_RS02045
TP_RS02060	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
TP_RS02080	SM00382	ATPases associated with a variety of cellular activities
TP_RS02080	SM00962	SRP54-type protein, GTPase domain
TP_RS02080	SM00963	SRP54-type protein, helical bundle domain
TP_RS02190	SM00260	Two component signalling adaptor domain
TP_RS02215	SM00257	Lysin motif
TP_RS02245	SM00838	Elongation factor G C-terminus
TP_RS02245	SM00889	Elongation factor G, domain IV
TP_RS02290	SM00363	S4 RNA-binding domain
TP_RS02295	SM00028	Tetratricopeptide repeats
TP_RS02300	SM00530	Helix-turn-helix XRE-family like proteins 
TP_RS02330	SM00028	Tetratricopeptide repeats
TP_RS02335	SM00028	Tetratricopeptide repeats
TP_RS02340	SM00465	GIY-YIG type nucleases (URI domain)
TP_RS02405	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TP_RS02405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TP_RS02420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TP_RS02420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TP_RS02435	SM00849	Metallo-beta-lactamase superfamily
TP_RS02450	SM00400	zinc finger
TP_RS02450	SM00493	TP_RS02450
TP_RS02465	SM00028	Tetratricopeptide repeats
TP_RS02495	SM00248	ankyrin repeats
TP_RS02535	SM00382	ATPases associated with a variety of cellular activities
TP_RS02535	SM00994	ClpX C4-type zinc finger
TP_RS02535	SM01086	C-terminal, D2-small domain, of ClpB protein
TP_RS02550	SM01058	CarD-like/TRCF domain
TP_RS02590	SM00382	ATPases associated with a variety of cellular activities
TP_RS02590	SM00448	cheY-homologous receiver domain
TP_RS02615	SM00382	ATPases associated with a variety of cellular activities
TP_RS02615	SM00464	Found in ATP-dependent protease La (LON)
TP_RS02620	SM00841	Elongation factor P, C-terminal
TP_RS02620	SM01185	TP_RS02620
TP_RS02630	SM00487	DEAD-like helicases superfamily
TP_RS02630	SM00490	helicase superfamily c-terminal domain
TP_RS02630	SM00847	Helicase associated domain (HA2)  Add an annotation
TP_RS02725	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TP_RS02760	SM00382	ATPases associated with a variety of cellular activities
TP_RS02760	SM01086	C-terminal, D2-small domain, of ClpB protein
TP_RS02770	SM00014	Acid phosphatase homologues
TP_RS02815	SM00981	TP_RS02815
TP_RS02820	SM00861	Transketolase, pyrimidine binding domain
TP_RS02835	SM00271	DnaJ molecular chaperone homology domain
TP_RS02885	SM00900	TP_RS02885
TP_RS02900	SM00937	TP_RS02900
TP_RS02910	SM00382	ATPases associated with a variety of cellular activities
TP_RS02910	SM00962	SRP54-type protein, GTPase domain
TP_RS02910	SM00963	SRP54-type protein, helical bundle domain
TP_RS02925	SM00382	ATPases associated with a variety of cellular activities
TP_RS03030	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TP_RS03090	SM00382	ATPases associated with a variety of cellular activities
TP_RS03150	SM00257	Lysin motif
TP_RS03185	SM00138	Methyltransferase, chemotaxis proteins 
TP_RS03190	SM00448	cheY-homologous receiver domain
TP_RS03205	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TP_RS03205	SM00292	breast cancer carboxy-terminal domain
TP_RS03205	SM00532	Ligase N family
TP_RS03240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TP_RS03245	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TP_RS03260	SM00479	TP_RS03260
TP_RS03280	SM00028	Tetratricopeptide repeats
TP_RS03285	SM01091	Transporter associated domain
TP_RS03295	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TP_RS03300	SM00382	ATPases associated with a variety of cellular activities
TP_RS03370	SM00382	ATPases associated with a variety of cellular activities
TP_RS03385	SM00481	DNA polymerase alpha chain like domain
TP_RS03415	SM00463	Small MutS-related domain
TP_RS03455	SM01005	Alanine racemase, C-terminal domain
TP_RS03475	SM00382	ATPases associated with a variety of cellular activities
TP_RS03485	SM00487	DEAD-like helicases superfamily
TP_RS03485	SM00490	helicase superfamily c-terminal domain
TP_RS03510	SM00382	ATPases associated with a variety of cellular activities
TP_RS03555	SM01409	TP_RS03555
TP_RS03600	SM01245	TP_RS03600
TP_RS03615	SM00382	ATPases associated with a variety of cellular activities
TP_RS03615	SM00962	SRP54-type protein, GTPase domain
TP_RS03745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TP_RS03790	SM00327	von Willebrand factor (vWF) type A domain
TP_RS03810	SM00729	Elongator protein 3, MiaB family, Radical SAM
TP_RS03835	SM00740	TP_RS03835
TP_RS03855	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TP_RS03860	SM00382	ATPases associated with a variety of cellular activities
TP_RS03870	SM00838	Elongation factor G C-terminus
TP_RS03870	SM00889	Elongation factor G, domain IV
TP_RS03885	SM00487	DEAD-like helicases superfamily
TP_RS03885	SM00490	helicase superfamily c-terminal domain
TP_RS03920	SM00478	endonuclease III
TP_RS03920	SM00525	TP_RS03920
TP_RS03975	SM00382	ATPases associated with a variety of cellular activities
TP_RS04040	SM00382	ATPases associated with a variety of cellular activities
TP_RS04040	SM01086	C-terminal, D2-small domain, of ClpB protein
TP_RS04055	SM00955	TP_RS04055
TP_RS04075	SM00358	Double-stranded RNA binding motif
TP_RS04075	SM00535	Ribonuclease III family
TP_RS04110	SM01192	TP_RS04110
TP_RS04110	SM01193	TP_RS04110
TP_RS04115	SM00849	Metallo-beta-lactamase superfamily
TP_RS04120	SM00028	Tetratricopeptide repeats
TP_RS04140	SM00861	Transketolase, pyrimidine binding domain
TP_RS04175	SM00836	DALR anticodon binding domain
TP_RS04175	SM01016	Arginyl tRNA synthetase N terminal dom
TP_RS04180	SM00909	Sporulation and spore germination
TP_RS04195	SM00248	ankyrin repeats
TP_RS04205	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TP_RS04210	SM00382	ATPases associated with a variety of cellular activities
TP_RS04225	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TP_RS04235	SM00271	DnaJ molecular chaperone homology domain
TP_RS04240	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TP_RS04290	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TP_RS04290	SM00331	Sigma factor PP2C-like phosphatases
TP_RS04335	SM00257	Lysin motif
TP_RS04395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TP_RS04415	SM00382	ATPases associated with a variety of cellular activities
TP_RS04440	SM00316	Ribosomal protein S1-like RNA-binding domain
TP_RS04440	SM00322	K homology RNA-binding domain
TP_RS04445	SM01387	TP_RS04445
TP_RS04470	SM00316	Ribosomal protein S1-like RNA-binding domain
TP_RS04575	SM00028	Tetratricopeptide repeats
TP_RS04580	SM00116	Domain in cystathionine beta-synthase and other proteins.
TP_RS04580	SM00924	MgtE intracellular N domain
TP_RS04595	SM00028	Tetratricopeptide repeats
TP_RS04620	SM00316	Ribosomal protein S1-like RNA-binding domain
TP_RS04620	SM00732	Likely ribonuclease with RNase H fold.
TP_RS04690	SM01091	Transporter associated domain
TP_RS04705	SM00890	Domain of unknown function
TP_RS04745	SM00393	Putative single-stranded nucleic acids-binding domain
TP_RS04745	SM01245	TP_RS04745
TP_RS04755	SM01234	TP_RS04755
TP_RS04780	SM00028	Tetratricopeptide repeats
TP_RS04830	SM00382	ATPases associated with a variety of cellular activities
TP_RS04910	SM00267	diguanylate cyclase
TP_RS04915	SM01160	TP_RS04915
TP_RS04925	SM00387	Histidine kinase-like ATPases
TP_RS04955	SM00028	Tetratricopeptide repeats
TP_RS04985	SM00100	Cyclic nucleotide-monophosphate binding domain
TP_RS05010	SM00382	ATPases associated with a variety of cellular activities
TP_RS05010	SM00843	TP_RS05010
TP_RS05035	SM00493	TP_RS05035
TP_RS05040	SM00382	ATPases associated with a variety of cellular activities
TP_RS05045	SM00387	Histidine kinase-like ATPases
TP_RS05045	SM00433	TopoisomeraseII
TP_RS05065	SM00562	TP_RS05065
TP_RS05080	SM00883	Chaperonin 10 Kd subunit
TP_RS05100	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TP_RS05110	SM00322	K homology RNA-binding domain
TP_RS05110	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TP_RS05125	SM00845	GatB domain
TP_RS05130	SM00382	ATPases associated with a variety of cellular activities
