locus-tag class description DYQ05_RS00005 PF11638 DnaA N-terminal domain DYQ05_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DYQ05_RS00005 PF00308 Bacterial dnaA protein DYQ05_RS00020 PF00152 tRNA synthetases class II (D, K and N) DYQ05_RS00020 PF01336 OB-fold nucleic acid binding domain DYQ05_RS00025 PF07943 Penicillin-binding protein 5, C-terminal domain DYQ05_RS00025 PF00768 D-alanyl-D-alanine carboxypeptidase DYQ05_RS00030 PF02570 Precorrin-8X methylmutase DYQ05_RS00040 PF02743 Cache domain DYQ05_RS00040 PF00672 HAMP domain DYQ05_RS00040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS00065 PF16916 Dimerisation domain of Zinc Transporter DYQ05_RS00065 PF01545 Cation efflux family DYQ05_RS00095 PF03023 Lipid II flippase MurJ DYQ05_RS00100 PF03616 Sodium/glutamate symporter DYQ05_RS00110 PF12671 Putative amidase domain DYQ05_RS00125 PF01192 RNA polymerase Rpb6 DYQ05_RS00130 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS00130 PF09820 Predicted AAA-ATPase DYQ05_RS00145 PF00691 OmpA family DYQ05_RS00150 PF12729 Four helix bundle sensory module for signal transduction DYQ05_RS00150 PF00672 HAMP domain DYQ05_RS00150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS00155 PF01546 Peptidase family M20/M25/M40 DYQ05_RS00155 PF07687 Peptidase dimerisation domain DYQ05_RS00160 PF00849 RNA pseudouridylate synthase DYQ05_RS00160 PF01479 S4 domain DYQ05_RS00165 PF04079 Segregation and condensation complex subunit ScpB DYQ05_RS00170 PF02616 Segregation and condensation protein ScpA DYQ05_RS00185 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ05_RS00185 PF00391 PEP-utilising enzyme, mobile domain DYQ05_RS00200 PF13519 von Willebrand factor type A domain DYQ05_RS00210 PF00581 Rhodanese-like domain DYQ05_RS00220 PF01032 FecCD transport family DYQ05_RS00225 PF00005 ABC transporter DYQ05_RS00250 PF12804 MobA-like NTP transferase domain DYQ05_RS00255 PF02028 BCCT, betaine/carnitine/choline family transporter DYQ05_RS00260 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS00265 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS00270 PF09338 Glycine/sarcosine/betaine reductase component B subunits DYQ05_RS00275 PF02028 BCCT, betaine/carnitine/choline family transporter DYQ05_RS00280 PF01032 FecCD transport family DYQ05_RS00290 PF00300 Histidine phosphatase superfamily (branch 1) DYQ05_RS00305 PF01880 Desulfoferrodoxin DYQ05_RS00315 PF01554 MatE DYQ05_RS00600 PF00005 ABC transporter DYQ05_RS00605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS00605 PF00005 ABC transporter DYQ05_RS00610 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS00610 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS00615 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS00625 PF12833 Helix-turn-helix domain DYQ05_RS00625 PF02311 AraC-like ligand binding domain DYQ05_RS00630 PF17202 Single cache domain 3 DYQ05_RS00630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS00630 PF00672 HAMP domain DYQ05_RS00680 PF10609 NUBPL iron-transfer P-loop NTPase DYQ05_RS00690 PF01790 Prolipoprotein diacylglyceryl transferase DYQ05_RS00720 PF02390 Putative methyltransferase DYQ05_RS00740 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS00745 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS00750 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS00755 PF09338 Glycine/sarcosine/betaine reductase component B subunits DYQ05_RS00760 PF02743 Cache domain DYQ05_RS00760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS00760 PF00672 HAMP domain DYQ05_RS00765 PF02861 Clp amino terminal domain, pathogenicity island component DYQ05_RS00765 PF07724 AAA domain (Cdc48 subfamily) DYQ05_RS00765 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS00765 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_RS00765 PF17871 AAA lid domain DYQ05_RS00770 PF02617 ATP-dependent Clp protease adaptor protein ClpS DYQ05_RS00780 PF02677 Epoxyqueuosine reductase QueH DYQ05_RS00810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYQ05_RS00810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_RS00815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_RS00815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYQ05_RS00820 PF00163 Ribosomal protein S4/S9 N-terminal domain DYQ05_RS00820 PF01479 S4 domain DYQ05_RS00835 PF00166 Chaperonin 10 Kd subunit DYQ05_RS00840 PF03979 Sigma-70 factor, region 1.1 DYQ05_RS00840 PF04539 Sigma-70 region 3 DYQ05_RS00840 PF04545 Sigma-70, region 4 DYQ05_RS00840 PF00140 Sigma-70 factor, region 1.2 DYQ05_RS00840 PF04542 Sigma-70 region 2 DYQ05_RS00845 PF01171 PP-loop family DYQ05_RS00855 PF13180 PDZ domain DYQ05_RS00860 PF12146 Serine aminopeptidase, S33 DYQ05_RS00860 PF13026 Protein of unknown function (DUF3887) DYQ05_RS00865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DYQ05_RS00865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DYQ05_RS00880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ05_RS00885 PF13635 Domain of unknown function (DUF4143) DYQ05_RS00885 PF13173 AAA domain DYQ05_RS00890 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ05_RS00900 PF02719 Polysaccharide biosynthesis protein DYQ05_RS00905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ05_RS00920 PF02350 UDP-N-acetylglucosamine 2-epimerase DYQ05_RS00925 PF02911 Formyl transferase, C-terminal domain DYQ05_RS00925 PF00551 Formyl transferase DYQ05_RS00945 PF08666 SAF domain DYQ05_RS00945 PF03102 NeuB family DYQ05_RS00950 PF02348 Cytidylyltransferase DYQ05_RS00955 PF00483 Nucleotidyl transferase DYQ05_RS00980 PF02350 UDP-N-acetylglucosamine 2-epimerase DYQ05_RS00985 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYQ05_RS00985 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYQ05_RS00985 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYQ05_RS01000 PF04991 LicD family DYQ05_RS01010 PF01757 Acyltransferase family DYQ05_RS01020 PF00483 Nucleotidyl transferase DYQ05_RS01025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DYQ05_RS01030 PF04321 RmlD substrate binding domain DYQ05_RS01035 PF16363 GDP-mannose 4,6 dehydratase DYQ05_RS01045 PF03313 Serine dehydratase alpha chain DYQ05_RS01050 PF03315 Serine dehydratase beta chain DYQ05_RS01050 PF01842 ACT domain DYQ05_RS01055 PF05525 Branched-chain amino acid transport protein DYQ05_RS01070 PF04055 Radical SAM superfamily DYQ05_RS01070 PF00919 Uncharacterized protein family UPF0004 DYQ05_RS01130 PF02601 Exonuclease VII, large subunit DYQ05_RS01130 PF13742 OB-fold nucleic acid binding domain DYQ05_RS01140 PF00005 ABC transporter DYQ05_RS01145 PF03390 2-hydroxycarboxylate transporter family DYQ05_RS01150 PF18610 Periplasmic binding protein domain DYQ05_RS01150 PF13407 Periplasmic binding protein domain DYQ05_RS01160 PF13439 Glycosyltransferase Family 4 DYQ05_RS01160 PF00534 Glycosyl transferases group 1 DYQ05_RS01165 PF08402 TOBE domain DYQ05_RS01165 PF00005 ABC transporter DYQ05_RS01170 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS01175 PF03952 Enolase, N-terminal domain DYQ05_RS01175 PF00113 Enolase, C-terminal TIM barrel domain DYQ05_RS01185 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS01190 PF00005 ABC transporter DYQ05_RS01235 PF02080 TrkA-C domain DYQ05_RS01235 PF02254 TrkA-N domain DYQ05_RS01245 PF06418 CTP synthase N-terminus DYQ05_RS01245 PF00117 Glutamine amidotransferase class-I DYQ05_RS01260 PF00596 Class II Aldolase and Adducin N-terminal domain DYQ05_RS01265 PF00072 Response regulator receiver domain DYQ05_RS01270 PF02631 RecX family DYQ05_RS01275 PF00380 Ribosomal protein S9/S16 DYQ05_RS01280 PF00572 Ribosomal protein L13 DYQ05_RS01290 PF13088 BNR repeat-like domain DYQ05_RS01290 PF00754 F5/8 type C domain DYQ05_RS01290 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase DYQ05_RS01300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS01300 PF02743 Cache domain DYQ05_RS01300 PF00672 HAMP domain DYQ05_RS01310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DYQ05_RS01320 PF16811 TRAP transporter T-component DYQ05_RS01340 PF00005 ABC transporter DYQ05_RS01345 PF00005 ABC transporter DYQ05_RS01350 PF00005 ABC transporter DYQ05_RS01405 PF01547 Bacterial extracellular solute-binding protein DYQ05_RS01415 PF08402 TOBE domain DYQ05_RS01415 PF00005 ABC transporter DYQ05_RS01440 PF00005 ABC transporter DYQ05_RS01445 PF02632 BioY family DYQ05_RS01460 PF00571 CBS domain DYQ05_RS01460 PF00478 IMP dehydrogenase / GMP reductase domain DYQ05_RS01475 PF01470 Pyroglutamyl peptidase DYQ05_RS01485 PF13419 Haloacid dehalogenase-like hydrolase DYQ05_RS01495 PF03781 Sulfatase-modifying factor enzyme 1 DYQ05_RS01505 PF00072 Response regulator receiver domain DYQ05_RS01505 PF00196 Bacterial regulatory proteins, luxR family DYQ05_RS01510 PF02080 TrkA-C domain DYQ05_RS01510 PF02254 TrkA-N domain DYQ05_RS01515 PF02386 Cation transport protein DYQ05_RS01545 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DYQ05_RS01545 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DYQ05_RS01560 PF02881 SRP54-type protein, helical bundle domain DYQ05_RS01560 PF02978 Signal peptide binding domain DYQ05_RS01560 PF00448 SRP54-type protein, GTPase domain DYQ05_RS01570 PF00465 Iron-containing alcohol dehydrogenase DYQ05_RS01580 PF02223 Thymidylate kinase DYQ05_RS01590 PF02558 Ketopantoate reductase PanE/ApbA DYQ05_RS01590 PF08546 Ketopantoate reductase PanE/ApbA C terminal DYQ05_RS01605 PF07244 Surface antigen variable number repeat DYQ05_RS01605 PF01103 Surface antigen DYQ05_RS01615 PF05188 MutS domain II DYQ05_RS01615 PF01624 MutS domain I DYQ05_RS01615 PF05192 MutS domain III DYQ05_RS01615 PF00488 MutS domain V DYQ05_RS01615 PF05190 MutS family domain IV DYQ05_RS01625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ05_RS01630 PF02504 Fatty acid synthesis protein DYQ05_RS01650 PF13847 Methyltransferase domain DYQ05_RS01665 PF03687 Uncharacterised protein family (UPF0164) DYQ05_RS01705 PF00005 ABC transporter DYQ05_RS01705 PF00664 ABC transporter transmembrane region DYQ05_RS01710 PF00664 ABC transporter transmembrane region DYQ05_RS01710 PF00005 ABC transporter DYQ05_RS01715 PF00664 ABC transporter transmembrane region DYQ05_RS01715 PF00005 ABC transporter DYQ05_RS01725 PF01979 Amidohydrolase family DYQ05_RS01730 PF07075 Protein of unknown function (DUF1343) DYQ05_RS01735 PF00144 Beta-lactamase DYQ05_RS01765 PF00005 ABC transporter DYQ05_RS01785 PF17910 FeoB cytosolic helical domain DYQ05_RS01785 PF02421 Ferrous iron transport protein B DYQ05_RS01785 PF07670 Nucleoside recognition DYQ05_RS01785 PF04023 FeoA domain DYQ05_RS01785 PF07664 Ferrous iron transport protein B C terminus DYQ05_RS01820 PF09382 RQC domain DYQ05_RS01820 PF00270 DEAD/DEAH box helicase DYQ05_RS01820 PF00271 Helicase conserved C-terminal domain DYQ05_RS01820 PF00570 HRDC domain DYQ05_RS01820 PF16124 RecQ zinc-binding DYQ05_RS01850 PF00149 Calcineurin-like phosphoesterase DYQ05_RS01850 PF02872 5'-nucleotidase, C-terminal domain DYQ05_RS01865 PF01168 Alanine racemase, N-terminal domain DYQ05_RS01875 PF01330 RuvA N terminal domain DYQ05_RS01880 PF02075 Crossover junction endodeoxyribonuclease RuvC DYQ05_RS01895 PF00117 Glutamine amidotransferase class-I DYQ05_RS01895 PF01171 PP-loop family DYQ05_RS01895 PF00958 GMP synthase C terminal domain DYQ05_RS01900 PF00145 C-5 cytosine-specific DNA methylase DYQ05_RS01905 PF09561 HpaII restriction endonuclease DYQ05_RS01910 PF04480 Protein of unknown function (DUF559) DYQ05_RS01910 PF03852 DNA mismatch endonuclease Vsr DYQ05_RS01915 PF02603 HPr Serine kinase N terminus DYQ05_RS01915 PF07475 HPr Serine kinase C-terminal domain DYQ05_RS01920 PF00381 PTS HPr component phosphorylation site DYQ05_RS01935 PF12704 MacB-like periplasmic core domain DYQ05_RS01935 PF00005 ABC transporter DYQ05_RS01935 PF02687 FtsX-like permease family DYQ05_RS01940 PF00005 ABC transporter DYQ05_RS01940 PF02687 FtsX-like permease family DYQ05_RS01940 PF12704 MacB-like periplasmic core domain DYQ05_RS01945 PF00152 tRNA synthetases class II (D, K and N) DYQ05_RS01950 PF00403 Heavy-metal-associated domain DYQ05_RS01955 PF00133 tRNA synthetases class I (I, L, M and V) DYQ05_RS01955 PF10458 Valyl tRNA synthetase tRNA binding arm DYQ05_RS01955 PF08264 Anticodon-binding domain of tRNA DYQ05_RS01960 PF00664 ABC transporter transmembrane region DYQ05_RS01960 PF00005 ABC transporter DYQ05_RS01970 PF01042 Endoribonuclease L-PSP DYQ05_RS01975 PF00588 SpoU rRNA Methylase family DYQ05_RS01975 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYQ05_RS01985 PF00829 Ribosomal prokaryotic L21 protein DYQ05_RS01995 PF01016 Ribosomal L27 protein DYQ05_RS02000 PF01018 GTP1/OBG DYQ05_RS02000 PF01926 50S ribosome-binding GTPase DYQ05_RS02005 PF01467 Cytidylyltransferase-like DYQ05_RS02025 PF01869 BadF/BadG/BcrA/BcrD ATPase family DYQ05_RS02030 PF02743 Cache domain DYQ05_RS02030 PF00672 HAMP domain DYQ05_RS02030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS02070 PF00471 Ribosomal protein L33 DYQ05_RS02080 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DYQ05_RS02085 PF00467 KOW motif DYQ05_RS02085 PF02357 Transcription termination factor nusG DYQ05_RS02090 PF03946 Ribosomal protein L11, N-terminal domain DYQ05_RS02090 PF00298 Ribosomal protein L11, RNA binding domain DYQ05_RS02095 PF00687 Ribosomal protein L1p/L10e family DYQ05_RS02100 PF00466 Ribosomal protein L10 DYQ05_RS02105 PF16320 Ribosomal protein L7/L12 dimerisation domain DYQ05_RS02105 PF00542 Ribosomal protein L7/L12 C-terminal domain DYQ05_RS02110 PF04561 RNA polymerase Rpb2, domain 2 DYQ05_RS02110 PF00562 RNA polymerase Rpb2, domain 6 DYQ05_RS02110 PF04560 RNA polymerase Rpb2, domain 7 DYQ05_RS02110 PF04563 RNA polymerase beta subunit DYQ05_RS02110 PF04565 RNA polymerase Rpb2, domain 3 DYQ05_RS02110 PF10385 RNA polymerase beta subunit external 1 domain DYQ05_RS02115 PF00623 RNA polymerase Rpb1, domain 2 DYQ05_RS02115 PF04983 RNA polymerase Rpb1, domain 3 DYQ05_RS02115 PF04997 RNA polymerase Rpb1, domain 1 DYQ05_RS02115 PF04998 RNA polymerase Rpb1, domain 5 DYQ05_RS02115 PF05000 RNA polymerase Rpb1, domain 4 DYQ05_RS02140 PF02073 Thermophilic metalloprotease (M29) DYQ05_RS02145 PF00266 Aminotransferase class-V DYQ05_RS02165 PF03129 Anticodon binding domain DYQ05_RS02165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYQ05_RS02165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ05_RS02170 PF07730 Histidine kinase DYQ05_RS02175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DYQ05_RS02175 PF04408 Helicase associated domain (HA2) DYQ05_RS02175 PF00270 DEAD/DEAH box helicase DYQ05_RS02175 PF00271 Helicase conserved C-terminal domain DYQ05_RS02185 PF01268 Formate--tetrahydrofolate ligase DYQ05_RS02190 PF01476 LysM domain DYQ05_RS02190 PF00756 Putative esterase DYQ05_RS02195 PF05343 M42 glutamyl aminopeptidase DYQ05_RS02215 PF00501 AMP-binding enzyme DYQ05_RS02225 PF17932 Tetracyclin repressor-like, C-terminal domain DYQ05_RS02225 PF00440 Bacterial regulatory proteins, tetR family DYQ05_RS02230 PF03616 Sodium/glutamate symporter DYQ05_RS02235 PF00005 ABC transporter DYQ05_RS02235 PF00664 ABC transporter transmembrane region DYQ05_RS02250 PF00005 ABC transporter DYQ05_RS02255 PF00005 ABC transporter DYQ05_RS02255 PF08021 Siderophore-interacting FAD-binding domain DYQ05_RS02255 PF04954 Siderophore-interacting protein DYQ05_RS02255 PF00664 ABC transporter transmembrane region DYQ05_RS02270 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_RS02270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_RS02275 PF01813 ATP synthase subunit D DYQ05_RS02290 PF13277 YmdB-like protein DYQ05_RS02300 PF02867 Ribonucleotide reductase, barrel domain DYQ05_RS02300 PF03477 ATP cone domain DYQ05_RS02300 PF00317 Ribonucleotide reductase, all-alpha domain DYQ05_RS02305 PF00266 Aminotransferase class-V DYQ05_RS02310 PF01761 3-dehydroquinate synthase DYQ05_RS02315 PF01048 Phosphorylase superfamily DYQ05_RS02320 PF03471 Transporter associated domain DYQ05_RS02320 PF00571 CBS domain DYQ05_RS02320 PF01595 Cyclin M transmembrane N-terminal domain DYQ05_RS02340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS02340 PF00005 ABC transporter DYQ05_RS02345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS02345 PF00005 ABC transporter DYQ05_RS02350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS02355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS02360 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS02360 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS02365 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS02390 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS02395 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS02420 PF01081 KDPG and KHG aldolase DYQ05_RS02440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS02440 PF00672 HAMP domain DYQ05_RS02440 PF02743 Cache domain DYQ05_RS02455 PF00512 His Kinase A (phospho-acceptor) domain DYQ05_RS02455 PF00672 HAMP domain DYQ05_RS02455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_RS02455 PF01627 Hpt domain DYQ05_RS02455 PF00072 Response regulator receiver domain DYQ05_RS02455 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ05_RS02460 PF00072 Response regulator receiver domain DYQ05_RS02470 PF08241 Methyltransferase domain DYQ05_RS02485 PF00753 Metallo-beta-lactamase superfamily DYQ05_RS02495 PF00075 RNase H DYQ05_RS02500 PF00793 DAHP synthetase I family DYQ05_RS02505 PF02926 THUMP domain DYQ05_RS02505 PF02568 Thiamine biosynthesis protein (ThiI) DYQ05_RS02515 PF00005 ABC transporter DYQ05_RS02530 PF12169 DNA polymerase III subunits gamma and tau domain III DYQ05_RS02540 PF00183 Hsp90 protein DYQ05_RS02560 PF03979 Sigma-70 factor, region 1.1 DYQ05_RS02560 PF04542 Sigma-70 region 2 DYQ05_RS02560 PF04539 Sigma-70 region 3 DYQ05_RS02560 PF04545 Sigma-70, region 4 DYQ05_RS02560 PF00140 Sigma-70 factor, region 1.2 DYQ05_RS02580 PF01812 5-formyltetrahydrofolate cyclo-ligase family DYQ05_RS02585 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYQ05_RS02600 PF00080 Copper/zinc superoxide dismutase (SODC) DYQ05_RS02610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_RS02610 PF07196 Flagellin hook IN motif DYQ05_RS02615 PF00700 Bacterial flagellin C-terminal helical region DYQ05_RS02615 PF07196 Flagellin hook IN motif DYQ05_RS02615 PF00669 Bacterial flagellin N-terminal helical region DYQ05_RS02630 PF01026 TatD related DNase DYQ05_RS02635 PF01207 Dihydrouridine synthase (Dus) DYQ05_RS02645 PF00211 Adenylate and Guanylate cyclase catalytic domain DYQ05_RS02650 PF00258 Flavodoxin DYQ05_RS02670 PF01066 CDP-alcohol phosphatidyltransferase DYQ05_RS02675 PF00953 Glycosyl transferase family 4 DYQ05_RS02680 PF00448 SRP54-type protein, GTPase domain DYQ05_RS02685 PF10609 NUBPL iron-transfer P-loop NTPase DYQ05_RS02695 PF04542 Sigma-70 region 2 DYQ05_RS02695 PF04539 Sigma-70 region 3 DYQ05_RS02695 PF04545 Sigma-70, region 4 DYQ05_RS02725 PF00268 Ribonucleotide reductase, small chain DYQ05_RS02730 PF01594 AI-2E family transporter DYQ05_RS02735 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DYQ05_RS02750 PF01791 DeoC/LacD family aldolase DYQ05_RS02755 PF09820 Predicted AAA-ATPase DYQ05_RS02755 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS02760 PF03009 Glycerophosphoryl diester phosphodiesterase family DYQ05_RS02765 PF00156 Phosphoribosyl transferase domain DYQ05_RS02770 PF03485 Arginyl tRNA synthetase N terminal domain DYQ05_RS02770 PF00750 tRNA synthetases class I (R) DYQ05_RS02770 PF05746 DALR anticodon binding domain DYQ05_RS02775 PF07726 ATPase family associated with various cellular activities (AAA) DYQ05_RS02775 PF17863 AAA lid domain DYQ05_RS02840 PF01554 MatE DYQ05_RS02845 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DYQ05_RS02850 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYQ05_RS02850 PF14572 Phosphoribosyl synthetase-associated domain DYQ05_RS02860 PF00813 FliP family DYQ05_RS02870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYQ05_RS02870 PF04509 CheC-like family DYQ05_RS02875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYQ05_RS02875 PF02154 Flagellar motor switch protein FliM DYQ05_RS02880 PF03748 Flagellar basal body-associated protein FliL DYQ05_RS02885 PF13677 Membrane MotB of proton-channel complex MotA/MotB DYQ05_RS02885 PF00691 OmpA family DYQ05_RS02890 PF01618 MotA/TolQ/ExbB proton channel family DYQ05_RS02900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_RS02900 PF07559 Flagellar basal body protein FlaE DYQ05_RS02900 PF00460 Flagella basal body rod protein DYQ05_RS02905 PF03963 Flagellar hook capping protein - N-terminal region DYQ05_RS02915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_RS02920 PF11760 Cobalamin synthesis G N-terminal DYQ05_RS02920 PF01890 Cobalamin synthesis G C-terminus DYQ05_RS02920 PF11761 Cobalamin biosynthesis central region DYQ05_RS02935 PF00005 ABC transporter DYQ05_RS02945 PF05656 Protein of unknown function (DUF805) DYQ05_RS02955 PF12705 PD-(D/E)XK nuclease superfamily DYQ05_RS02975 PF00950 ABC 3 transport family DYQ05_RS03000 PF03144 Elongation factor Tu domain 2 DYQ05_RS03000 PF00009 Elongation factor Tu GTP binding domain DYQ05_RS03000 PF03764 Elongation factor G, domain IV DYQ05_RS03000 PF14492 Elongation Factor G, domain II DYQ05_RS03000 PF00679 Elongation factor G C-terminus DYQ05_RS03030 PF02926 THUMP domain DYQ05_RS03030 PF01170 Putative RNA methylase family UPF0020 DYQ05_RS03040 PF00664 ABC transporter transmembrane region DYQ05_RS03040 PF00005 ABC transporter DYQ05_RS03040 PF03412 Peptidase C39 family DYQ05_RS03045 PF00664 ABC transporter transmembrane region DYQ05_RS03045 PF00005 ABC transporter DYQ05_RS03080 PF02086 D12 class N6 adenine-specific DNA methyltransferase DYQ05_RS03085 PF02086 D12 class N6 adenine-specific DNA methyltransferase DYQ05_RS03115 PF00005 ABC transporter DYQ05_RS03130 PF10127 RNA repair pathway DNA polymerase beta family DYQ05_RS03165 PF00288 GHMP kinases N terminal domain DYQ05_RS03165 PF08544 GHMP kinases C terminal DYQ05_RS03165 PF10509 Galactokinase galactose-binding signature DYQ05_RS03170 PF00342 Phosphoglucose isomerase DYQ05_RS03175 PF01926 50S ribosome-binding GTPase DYQ05_RS03185 PF00501 AMP-binding enzyme DYQ05_RS03185 PF13193 AMP-binding enzyme C-terminal domain DYQ05_RS03210 PF01409 tRNA synthetases class II core domain (F) DYQ05_RS03220 PF01546 Peptidase family M20/M25/M40 DYQ05_RS03220 PF07687 Peptidase dimerisation domain DYQ05_RS03240 PF00005 ABC transporter DYQ05_RS03270 PF09827 CRISPR associated protein Cas2 DYQ05_RS03280 PF13395 HNH endonuclease DYQ05_RS03280 PF18061 CRISPR-Cas9 WED domain DYQ05_RS03280 PF18070 CRISPR-Cas9 PI domain DYQ05_RS03280 PF18470 Cas9 alpha-helical lobe domain DYQ05_RS03280 PF18541 RuvC endonuclease subdomain 3 DYQ05_RS03295 PF00664 ABC transporter transmembrane region DYQ05_RS03295 PF00005 ABC transporter DYQ05_RS03310 PF00005 ABC transporter DYQ05_RS03320 PF02311 AraC-like ligand binding domain DYQ05_RS03320 PF12833 Helix-turn-helix domain DYQ05_RS03345 PF04607 Region found in RelA / SpoT proteins DYQ05_RS03350 PF00883 Cytosol aminopeptidase family, catalytic domain DYQ05_RS03350 PF02789 Cytosol aminopeptidase family, N-terminal domain DYQ05_RS03370 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DYQ05_RS03375 PF00005 ABC transporter DYQ05_RS03375 PF00664 ABC transporter transmembrane region DYQ05_RS03385 PF00571 CBS domain DYQ05_RS03385 PF03448 MgtE intracellular N domain DYQ05_RS03385 PF01769 Divalent cation transporter DYQ05_RS03410 PF04851 Type III restriction enzyme, res subunit DYQ05_RS03410 PF00271 Helicase conserved C-terminal domain DYQ05_RS03410 PF12344 Ultra-violet resistance protein B DYQ05_RS03410 PF02151 UvrB/uvrC motif DYQ05_RS03410 PF17757 UvrB interaction domain DYQ05_RS03435 PF00326 Prolyl oligopeptidase family DYQ05_RS03435 PF07676 WD40-like Beta Propeller Repeat DYQ05_RS03445 PF01979 Amidohydrolase family DYQ05_RS03455 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DYQ05_RS03455 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYQ05_RS03455 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DYQ05_RS03465 PF01204 Trehalase DYQ05_RS03470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ05_RS03470 PF03129 Anticodon binding domain DYQ05_RS03510 PF02557 D-alanyl-D-alanine carboxypeptidase DYQ05_RS03515 PF01740 STAS domain DYQ05_RS03530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYQ05_RS03530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYQ05_RS03535 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ05_RS03535 PF00326 Prolyl oligopeptidase family DYQ05_RS03540 PF03960 ArsC family DYQ05_RS03555 PF01725 Ham1 family DYQ05_RS03560 PF01207 Dihydrouridine synthase (Dus) DYQ05_RS03565 PF01235 Sodium:alanine symporter family DYQ05_RS03570 PF00708 Acylphosphatase DYQ05_RS03585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ05_RS03585 PF00128 Alpha amylase, catalytic domain DYQ05_RS03595 PF00375 Sodium:dicarboxylate symporter family DYQ05_RS03600 PF00291 Pyridoxal-phosphate dependent enzyme DYQ05_RS03605 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYQ05_RS03610 PF13180 PDZ domain DYQ05_RS03615 PF01139 tRNA-splicing ligase RtcB DYQ05_RS03620 PF00464 Serine hydroxymethyltransferase DYQ05_RS03625 PF09334 tRNA synthetases class I (M) DYQ05_RS03625 PF01588 Putative tRNA binding domain DYQ05_RS03630 PF10437 Bacterial lipoate protein ligase C-terminus DYQ05_RS03630 PF03099 Biotin/lipoate A/B protein ligase family DYQ05_RS03635 PF04055 Radical SAM superfamily DYQ05_RS03635 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DYQ05_RS03640 PF01841 Transglutaminase-like superfamily DYQ05_RS03655 PF09190 DALR domain DYQ05_RS03655 PF01406 tRNA synthetases class I (C) catalytic domain DYQ05_RS03660 PF01145 SPFH domain / Band 7 family DYQ05_RS03665 PF01145 SPFH domain / Band 7 family DYQ05_RS03670 PF01226 Formate/nitrite transporter DYQ05_RS03675 PF02767 DNA polymerase III beta subunit, central domain DYQ05_RS03675 PF00712 DNA polymerase III beta subunit, N-terminal domain DYQ05_RS03675 PF02768 DNA polymerase III beta subunit, C-terminal domain DYQ05_RS03680 PF02463 RecF/RecN/SMC N terminal domain DYQ05_RS03685 PF13649 Methyltransferase domain DYQ05_RS03710 PF01430 Hsp33 protein DYQ05_RS03720 PF02547 Queuosine biosynthesis protein DYQ05_RS03735 PF00005 ABC transporter DYQ05_RS03745 PF00133 tRNA synthetases class I (I, L, M and V) DYQ05_RS03745 PF08264 Anticodon-binding domain of tRNA DYQ05_RS03750 PF04225 Opacity-associated protein A LysM-like domain DYQ05_RS03750 PF01551 Peptidase family M23 DYQ05_RS03760 PF03885 Protein of unknown function (DUF327) DYQ05_RS03765 PF04468 PSP1 C-terminal conserved region DYQ05_RS03780 PF03824 High-affinity nickel-transport protein DYQ05_RS03790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS03790 PF00672 HAMP domain DYQ05_RS03795 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DYQ05_RS03795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYQ05_RS03795 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DYQ05_RS03795 PF10371 Domain of unknown function DYQ05_RS03795 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DYQ05_RS03800 PF00664 ABC transporter transmembrane region DYQ05_RS03800 PF00005 ABC transporter DYQ05_RS03805 PF00664 ABC transporter transmembrane region DYQ05_RS03805 PF03412 Peptidase C39 family DYQ05_RS03805 PF00005 ABC transporter DYQ05_RS03810 PF00005 ABC transporter DYQ05_RS03810 PF14524 Wzt C-terminal domain DYQ05_RS03815 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DYQ05_RS03815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYQ05_RS03815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYQ05_RS03815 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DYQ05_RS03820 PF00730 HhH-GPD superfamily base excision DNA repair protein DYQ05_RS03825 PF01580 FtsK/SpoIIIE family DYQ05_RS03825 PF17854 FtsK alpha domain DYQ05_RS03825 PF09397 Ftsk gamma domain DYQ05_RS03830 PF02673 Bacitracin resistance protein BacA DYQ05_RS03840 PF07685 CobB/CobQ-like glutamine amidotransferase domain DYQ05_RS03845 PF13932 GidA associated domain DYQ05_RS03845 PF01134 Glucose inhibited division protein A DYQ05_RS03850 PF02127 Aminopeptidase I zinc metalloprotease (M18) DYQ05_RS03860 PF03030 Inorganic H+ pyrophosphatase DYQ05_RS03865 PF00210 Ferritin-like domain DYQ05_RS03870 PF00326 Prolyl oligopeptidase family DYQ05_RS03870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ05_RS03880 PF01926 50S ribosome-binding GTPase DYQ05_RS03880 PF16360 GTP-binding GTPase Middle Region DYQ05_RS03880 PF13167 GTP-binding GTPase N-terminal DYQ05_RS03885 PF08543 Phosphomethylpyrimidine kinase DYQ05_RS03890 PF01969 Protein of unknown function DUF111 DYQ05_RS03900 PF02971 Formiminotransferase domain DYQ05_RS03900 PF07837 Formiminotransferase domain, N-terminal subdomain DYQ05_RS03905 PF00155 Aminotransferase class I and II DYQ05_RS03920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_RS03930 PF01048 Phosphorylase superfamily DYQ05_RS03935 PF00271 Helicase conserved C-terminal domain DYQ05_RS03935 PF00270 DEAD/DEAH box helicase DYQ05_RS03935 PF17191 RecG wedge domain DYQ05_RS03940 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYQ05_RS03940 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYQ05_RS03945 PF00107 Zinc-binding dehydrogenase DYQ05_RS03945 PF08240 Alcohol dehydrogenase GroES-like domain DYQ05_RS03950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS03950 PF00005 ABC transporter DYQ05_RS03955 PF00005 ABC transporter DYQ05_RS03955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS03960 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS03960 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS03965 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS03970 PF00274 Fructose-bisphosphate aldolase class-I DYQ05_RS03975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ05_RS03975 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS03985 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DYQ05_RS03995 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DYQ05_RS04005 PF01963 TraB family DYQ05_RS04020 PF04024 PspC domain DYQ05_RS04025 PF02561 Flagellar protein FliS DYQ05_RS04040 PF00672 HAMP domain DYQ05_RS04040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS04055 PF08003 Protein of unknown function (DUF1698) DYQ05_RS04060 PF04191 Phospholipid methyltransferase DYQ05_RS04065 PF00664 ABC transporter transmembrane region DYQ05_RS04065 PF00005 ABC transporter DYQ05_RS04075 PF01497 Periplasmic binding protein DYQ05_RS04085 PF00005 ABC transporter DYQ05_RS04090 PF01032 FecCD transport family DYQ05_RS04095 PF08241 Methyltransferase domain DYQ05_RS04175 PF17239 Family of unknown function (DUF5312) DYQ05_RS04195 PF01180 Dihydroorotate dehydrogenase DYQ05_RS04210 PF03773 Predicted permease DYQ05_RS04220 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYQ05_RS04220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYQ05_RS04220 PF14579 Helix-hairpin-helix motif DYQ05_RS04220 PF02811 PHP domain DYQ05_RS04235 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS04235 PF04324 BFD-like [2Fe-2S] binding domain DYQ05_RS04240 PF00005 ABC transporter DYQ05_RS04260 PF01171 PP-loop family DYQ05_RS04265 PF01925 Sulfite exporter TauE/SafE DYQ05_RS04275 PF02082 Transcriptional regulator DYQ05_RS04280 PF13460 NAD(P)H-binding DYQ05_RS04285 PF03102 NeuB family DYQ05_RS04285 PF08666 SAF domain DYQ05_RS04300 PF11798 IMS family HHH motif DYQ05_RS04300 PF00817 impB/mucB/samB family DYQ05_RS04300 PF11799 impB/mucB/samB family C-terminal domain DYQ05_RS04325 PF00005 ABC transporter DYQ05_RS04345 PF00037 4Fe-4S binding domain DYQ05_RS04345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ05_RS04345 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DYQ05_RS04350 PF00037 4Fe-4S binding domain DYQ05_RS04350 PF02256 Iron hydrogenase small subunit DYQ05_RS04350 PF02906 Iron only hydrogenase large subunit, C-terminal domain DYQ05_RS04350 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYQ05_RS04365 PF03062 MBOAT, membrane-bound O-acyltransferase family DYQ05_RS04370 PF00005 ABC transporter DYQ05_RS04375 PF00210 Ferritin-like domain DYQ05_RS04380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS04380 PF02743 Cache domain DYQ05_RS04380 PF00672 HAMP domain DYQ05_RS04400 PF01206 Sulfurtransferase TusA DYQ05_RS04425 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS04430 PF00005 ABC transporter DYQ05_RS04440 PF00005 ABC transporter DYQ05_RS04445 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component DYQ05_RS04460 PF00436 Single-strand binding protein family DYQ05_RS04470 PF03600 Citrate transporter DYQ05_RS04485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS04490 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS04495 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS04495 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS04500 PF00005 ABC transporter DYQ05_RS04500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS04505 PF00005 ABC transporter DYQ05_RS04505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS04510 PF00005 ABC transporter DYQ05_RS04510 PF00664 ABC transporter transmembrane region DYQ05_RS04535 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS04535 PF09820 Predicted AAA-ATPase DYQ05_RS04545 PF00312 Ribosomal protein S15 DYQ05_RS04550 PF06574 FAD synthetase DYQ05_RS04550 PF01687 Riboflavin kinase DYQ05_RS04555 PF00672 HAMP domain DYQ05_RS04555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS04580 PF00899 ThiF family DYQ05_RS04585 PF00953 Glycosyl transferase family 4 DYQ05_RS04595 PF00860 Permease family DYQ05_RS04610 PF12631 MnmE helical domain DYQ05_RS04610 PF01926 50S ribosome-binding GTPase DYQ05_RS04610 PF10396 GTP-binding protein TrmE N-terminus DYQ05_RS04620 PF10502 Signal peptidase, peptidase S26 DYQ05_RS04635 PF04055 Radical SAM superfamily DYQ05_RS04635 PF18693 TRAM domain DYQ05_RS04635 PF00919 Uncharacterized protein family UPF0004 DYQ05_RS04655 PF00672 HAMP domain DYQ05_RS04655 PF00211 Adenylate and Guanylate cyclase catalytic domain DYQ05_RS04665 PF13419 Haloacid dehalogenase-like hydrolase DYQ05_RS04670 PF13193 AMP-binding enzyme C-terminal domain DYQ05_RS04670 PF00501 AMP-binding enzyme DYQ05_RS04675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS04685 PF01661 Macro domain DYQ05_RS04695 PF00005 ABC transporter DYQ05_RS04710 PF01381 Helix-turn-helix DYQ05_RS04710 PF00145 C-5 cytosine-specific DNA methylase DYQ05_RS04715 PF17862 AAA+ lid domain DYQ05_RS04715 PF06480 FtsH Extracellular DYQ05_RS04715 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS04715 PF01434 Peptidase family M41 DYQ05_RS04795 PF03069 Acetamidase/Formamidase family DYQ05_RS04845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYQ05_RS04845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYQ05_RS04855 PF02540 NAD synthase DYQ05_RS04860 PF00664 ABC transporter transmembrane region DYQ05_RS04860 PF00005 ABC transporter DYQ05_RS04865 PF00664 ABC transporter transmembrane region DYQ05_RS04865 PF00005 ABC transporter DYQ05_RS04870 PF00005 ABC transporter DYQ05_RS04870 PF00664 ABC transporter transmembrane region DYQ05_RS04885 PF12557 Cob(I)alamin adenosyltransferase N terminal DYQ05_RS04885 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DYQ05_RS04890 PF17762 HTH domain found in ParB protein DYQ05_RS04890 PF02195 ParB-like nuclease domain DYQ05_RS04895 PF13614 AAA domain DYQ05_RS04900 PF00672 HAMP domain DYQ05_RS04900 PF02743 Cache domain DYQ05_RS04900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS04910 PF07729 FCD domain DYQ05_RS04910 PF00392 Bacterial regulatory proteins, gntR family DYQ05_RS04915 PF03390 2-hydroxycarboxylate transporter family DYQ05_RS04920 PF03390 2-hydroxycarboxylate transporter family DYQ05_RS04925 PF00364 Biotin-requiring enzyme DYQ05_RS04925 PF00682 HMGL-like DYQ05_RS04925 PF02436 Conserved carboxylase domain DYQ05_RS04935 PF00364 Biotin-requiring enzyme DYQ05_RS04940 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DYQ05_RS04945 PF06857 Malonate decarboxylase delta subunit (MdcD) DYQ05_RS04950 PF03328 HpcH/HpaI aldolase/citrate lyase family DYQ05_RS04955 PF04223 Citrate lyase, alpha subunit (CitF) DYQ05_RS04970 PF01343 Peptidase family S49 DYQ05_RS04975 PF06071 Protein of unknown function (DUF933) DYQ05_RS04975 PF01926 50S ribosome-binding GTPase DYQ05_RS04985 PF08245 Mur ligase middle domain DYQ05_RS04985 PF02875 Mur ligase family, glutamate ligase domain DYQ05_RS04990 PF02608 ABC transporter substrate-binding protein PnrA-like DYQ05_RS04995 PF00005 ABC transporter DYQ05_RS05000 PF02653 Branched-chain amino acid transport system / permease component DYQ05_RS05005 PF02653 Branched-chain amino acid transport system / permease component DYQ05_RS05010 PF13941 MutL protein DYQ05_RS05015 PF02310 B12 binding domain DYQ05_RS05025 PF00664 ABC transporter transmembrane region DYQ05_RS05025 PF00005 ABC transporter DYQ05_RS05030 PF01266 FAD dependent oxidoreductase DYQ05_RS05050 PF01515 Phosphate acetyl/butaryl transferase DYQ05_RS05055 PF13176 Tetratricopeptide repeat DYQ05_RS05055 PF13174 Tetratricopeptide repeat DYQ05_RS05060 PF01432 Peptidase family M3 DYQ05_RS05060 PF08439 Oligopeptidase F DYQ05_RS05065 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_RS05065 PF02861 Clp amino terminal domain, pathogenicity island component DYQ05_RS05065 PF17871 AAA lid domain DYQ05_RS05065 PF07724 AAA domain (Cdc48 subfamily) DYQ05_RS05065 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS05070 PF01202 Shikimate kinase DYQ05_RS05080 PF01416 tRNA pseudouridine synthase DYQ05_RS05085 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) DYQ05_RS05090 PF01680 SOR/SNZ family DYQ05_RS05100 PF01066 CDP-alcohol phosphatidyltransferase DYQ05_RS05110 PF00672 HAMP domain DYQ05_RS05110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS05115 PF06689 ClpX C4-type zinc finger DYQ05_RS05115 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_RS05115 PF07724 AAA domain (Cdc48 subfamily) DYQ05_RS05125 PF05698 Bacterial trigger factor protein (TF) C-terminus DYQ05_RS05125 PF05697 Bacterial trigger factor protein (TF) DYQ05_RS05125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_RS05140 PF00155 Aminotransferase class I and II DYQ05_RS05155 PF00072 Response regulator receiver domain DYQ05_RS05165 PF01584 CheW-like domain DYQ05_RS05170 PF01584 CheW-like domain DYQ05_RS05170 PF07194 P2 response regulator binding domain DYQ05_RS05170 PF02895 Signal transducing histidine kinase, homodimeric domain DYQ05_RS05170 PF01627 Hpt domain DYQ05_RS05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_RS05185 PF00814 Glycoprotease family DYQ05_RS05200 PF01106 NifU-like domain DYQ05_RS05200 PF01521 Iron-sulphur cluster biosynthesis DYQ05_RS05205 PF00692 dUTPase DYQ05_RS05210 PF16258 Domain of unknown function (DUF4912) DYQ05_RS05220 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS05220 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYQ05_RS05225 PF00175 Oxidoreductase NAD-binding domain DYQ05_RS05225 PF00970 Oxidoreductase FAD-binding domain DYQ05_RS05225 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DYQ05_RS05245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ05_RS05255 PF01799 [2Fe-2S] binding domain DYQ05_RS05255 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ05_RS05260 PF00941 FAD binding domain in molybdopterin dehydrogenase DYQ05_RS05260 PF03450 CO dehydrogenase flavoprotein C-terminal domain DYQ05_RS05270 PF00154 recA bacterial DNA recombination protein DYQ05_RS05275 PF01313 Bacterial export proteins, family 3 DYQ05_RS05280 PF01311 Bacterial export proteins, family 1 DYQ05_RS05285 PF01312 FlhB HrpN YscU SpaS Family DYQ05_RS05305 PF00403 Heavy-metal-associated domain DYQ05_RS05315 PF02954 Bacterial regulatory protein, Fis family DYQ05_RS05315 PF00158 Sigma-54 interaction domain DYQ05_RS05335 PF00834 Ribulose-phosphate 3 epimerase family DYQ05_RS05355 PF00005 ABC transporter DYQ05_RS05360 PF04225 Opacity-associated protein A LysM-like domain DYQ05_RS05360 PF01551 Peptidase family M23 DYQ05_RS05365 PF12072 Domain of unknown function (DUF3552) DYQ05_RS05365 PF00013 KH domain DYQ05_RS05365 PF01966 HD domain DYQ05_RS05390 PF00521 DNA gyrase/topoisomerase IV, subunit A DYQ05_RS05395 PF01497 Periplasmic binding protein DYQ05_RS05400 PF01032 FecCD transport family DYQ05_RS05405 PF00005 ABC transporter DYQ05_RS05425 PF00664 ABC transporter transmembrane region DYQ05_RS05425 PF00005 ABC transporter DYQ05_RS05430 PF03412 Peptidase C39 family DYQ05_RS05430 PF00664 ABC transporter transmembrane region DYQ05_RS05430 PF00005 ABC transporter DYQ05_RS05455 PF00005 ABC transporter DYQ05_RS05465 PF00005 ABC transporter DYQ05_RS05470 PF02571 Precorrin-6x reductase CbiJ/CobK DYQ05_RS05475 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYQ05_RS05475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_RS05480 PF12729 Four helix bundle sensory module for signal transduction DYQ05_RS05480 PF00672 HAMP domain DYQ05_RS05480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS05485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DYQ05_RS05485 PF07685 CobB/CobQ-like glutamine amidotransferase domain DYQ05_RS05490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_RS05495 PF06180 Cobalt chelatase (CbiK) DYQ05_RS05515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS05515 PF00672 HAMP domain DYQ05_RS05515 PF02743 Cache domain DYQ05_RS05520 PF10531 SLBB domain DYQ05_RS05520 PF13375 RnfC Barrel sandwich hybrid domain DYQ05_RS05520 PF13237 4Fe-4S dicluster domain DYQ05_RS05520 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ05_RS05525 PF03116 NQR2, RnfD, RnfE family DYQ05_RS05530 PF04205 FMN-binding domain DYQ05_RS05535 PF02508 Rnf-Nqr subunit, membrane protein DYQ05_RS05545 PF05034 Methylaspartate ammonia-lyase N-terminus DYQ05_RS05545 PF07476 Methylaspartate ammonia-lyase C-terminus DYQ05_RS05560 PF02021 Uncharacterised protein family UPF0102 DYQ05_RS05565 PF00072 Response regulator receiver domain DYQ05_RS05570 PF01312 FlhB HrpN YscU SpaS Family DYQ05_RS05580 PF04452 RNA methyltransferase DYQ05_RS05590 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DYQ05_RS05590 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DYQ05_RS05595 PF02527 rRNA small subunit methyltransferase G DYQ05_RS05600 PF00171 Aldehyde dehydrogenase family DYQ05_RS05605 PF03553 Na+/H+ antiporter family DYQ05_RS05610 PF06368 Methylaspartate mutase E chain (MutE) DYQ05_RS05615 PF00266 Aminotransferase class-V DYQ05_RS05630 PF03880 DbpA RNA binding domain DYQ05_RS05640 PF01554 MatE DYQ05_RS05645 PF00149 Calcineurin-like phosphoesterase DYQ05_RS05650 PF13476 AAA domain DYQ05_RS05670 PF14353 CpXC protein DYQ05_RS05675 PF01479 S4 domain DYQ05_RS05675 PF00849 RNA pseudouridylate synthase DYQ05_RS05695 PF00561 alpha/beta hydrolase fold DYQ05_RS05720 PF01425 Amidase DYQ05_RS05740 PF13545 Crp-like helix-turn-helix domain DYQ05_RS05740 PF00027 Cyclic nucleotide-binding domain DYQ05_RS05755 PF01613 Flavin reductase like domain DYQ05_RS05755 PF00753 Metallo-beta-lactamase superfamily DYQ05_RS05770 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS05775 PF00085 Thioredoxin DYQ05_RS05800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_RS05835 PF01494 FAD binding domain DYQ05_RS05840 PF01209 ubiE/COQ5 methyltransferase family DYQ05_RS05850 PF00348 Polyprenyl synthetase DYQ05_RS05855 PF11870 Domain of unknown function (DUF3390) DYQ05_RS05855 PF13183 4Fe-4S dicluster domain DYQ05_RS05855 PF02589 LUD domain DYQ05_RS05865 PF00005 ABC transporter DYQ05_RS05870 PF02374 Anion-transporting ATPase DYQ05_RS05870 PF17886 HSP20-like domain found in ArsA DYQ05_RS05875 PF02374 Anion-transporting ATPase DYQ05_RS05875 PF17886 HSP20-like domain found in ArsA DYQ05_RS05880 PF02652 L-lactate permease DYQ05_RS05885 PF01012 Electron transfer flavoprotein domain DYQ05_RS05890 PF01012 Electron transfer flavoprotein domain DYQ05_RS05890 PF00766 Electron transfer flavoprotein FAD-binding domain DYQ05_RS05995 PF01555 DNA methylase DYQ05_RS06010 PF01934 Protein of unknown function DUF86 DYQ05_RS06025 PF13087 AAA domain DYQ05_RS06025 PF13195 Protein of unknown function (DUF4011) DYQ05_RS06025 PF13086 AAA domain DYQ05_RS06080 PF06463 Molybdenum Cofactor Synthesis C DYQ05_RS06080 PF04055 Radical SAM superfamily DYQ05_RS06100 PF12728 Helix-turn-helix domain DYQ05_RS06100 PF02661 Fic/DOC family DYQ05_RS06180 PF01048 Phosphorylase superfamily DYQ05_RS06340 PF05076 Suppressor of fused protein (SUFU) DYQ05_RS06350 PF00561 alpha/beta hydrolase fold DYQ05_RS06375 PF00664 ABC transporter transmembrane region DYQ05_RS06375 PF00005 ABC transporter DYQ05_RS06380 PF04055 Radical SAM superfamily DYQ05_RS06380 PF13186 Iron-sulfur cluster-binding domain DYQ05_RS06410 PF00248 Aldo/keto reductase family DYQ05_RS06435 PF00672 HAMP domain DYQ05_RS06435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS06455 PF09820 Predicted AAA-ATPase DYQ05_RS06455 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS06460 PF12833 Helix-turn-helix domain DYQ05_RS06460 PF02311 AraC-like ligand binding domain DYQ05_RS06465 PF00664 ABC transporter transmembrane region DYQ05_RS06465 PF00005 ABC transporter DYQ05_RS06470 PF00664 ABC transporter transmembrane region DYQ05_RS06470 PF00005 ABC transporter DYQ05_RS06500 PF03601 Conserved hypothetical protein 698 DYQ05_RS06510 PF00005 ABC transporter DYQ05_RS06520 PF00672 HAMP domain DYQ05_RS06520 PF02743 Cache domain DYQ05_RS06520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS06525 PF00162 Phosphoglycerate kinase DYQ05_RS06540 PF02653 Branched-chain amino acid transport system / permease component DYQ05_RS06545 PF02653 Branched-chain amino acid transport system / permease component DYQ05_RS06550 PF00005 ABC transporter DYQ05_RS06555 PF02608 ABC transporter substrate-binding protein PnrA-like DYQ05_RS06560 PF03537 Glycoside-hydrolase family GH114 DYQ05_RS06585 PF04620 Flagellar filament outer layer protein Flaa DYQ05_RS06595 PF01649 Ribosomal protein S20 DYQ05_RS06600 PF00216 Bacterial DNA-binding protein DYQ05_RS06605 PF00795 Carbon-nitrogen hydrolase DYQ05_RS06615 PF02464 Competence-damaged protein DYQ05_RS06615 PF00994 Probable molybdopterin binding domain DYQ05_RS06615 PF18146 Damage-inducible protein CinA KH domain DYQ05_RS06620 PF00892 EamA-like transporter family DYQ05_RS06625 PF03313 Serine dehydratase alpha chain DYQ05_RS06630 PF12729 Four helix bundle sensory module for signal transduction DYQ05_RS06630 PF00672 HAMP domain DYQ05_RS06630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS06635 PF12627 Probable RNA and SrmB- binding site of polymerase A DYQ05_RS06635 PF01743 Poly A polymerase head domain DYQ05_RS06635 PF13735 tRNA nucleotidyltransferase domain 2 putative DYQ05_RS06655 PF00664 ABC transporter transmembrane region DYQ05_RS06655 PF00005 ABC transporter DYQ05_RS06660 PF00664 ABC transporter transmembrane region DYQ05_RS06660 PF00005 ABC transporter DYQ05_RS06690 PF01702 Queuine tRNA-ribosyltransferase DYQ05_RS06695 PF12850 Calcineurin-like phosphoesterase superfamily domain DYQ05_RS06710 PF03948 Ribosomal protein L9, C-terminal domain DYQ05_RS06710 PF01281 Ribosomal protein L9, N-terminal domain DYQ05_RS06715 PF01084 Ribosomal protein S18 DYQ05_RS06720 PF00436 Single-strand binding protein family DYQ05_RS06725 PF01250 Ribosomal protein S6 DYQ05_RS06750 PF05593 RHS Repeat DYQ05_RS06750 PF05488 PAAR motif DYQ05_RS06760 PF05593 RHS Repeat DYQ05_RS06760 PF05488 PAAR motif DYQ05_RS06765 PF00860 Permease family DYQ05_RS06780 PF01888 CbiD DYQ05_RS06785 PF01228 Glycine radical DYQ05_RS06785 PF02901 Pyruvate formate lyase-like DYQ05_RS06790 PF04055 Radical SAM superfamily DYQ05_RS06795 PF00011 Hsp20/alpha crystallin family DYQ05_RS06800 PF16314 Domain of unknown function (DUF4954) DYQ05_RS06825 PF00005 ABC transporter DYQ05_RS06825 PF00664 ABC transporter transmembrane region DYQ05_RS06830 PF00664 ABC transporter transmembrane region DYQ05_RS06830 PF00005 ABC transporter DYQ05_RS06835 PF00005 ABC transporter DYQ05_RS06840 PF01032 FecCD transport family DYQ05_RS06845 PF01497 Periplasmic binding protein DYQ05_RS06850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS06850 PF17200 Single Cache domain 2 DYQ05_RS06850 PF00672 HAMP domain DYQ05_RS06855 PF01339 CheB methylesterase DYQ05_RS06855 PF00072 Response regulator receiver domain DYQ05_RS06860 PF03705 CheR methyltransferase, all-alpha domain DYQ05_RS06860 PF01739 CheR methyltransferase, SAM binding domain DYQ05_RS06875 PF00005 ABC transporter DYQ05_RS06875 PF12399 Branched-chain amino acid ATP-binding cassette transporter DYQ05_RS06880 PF04205 FMN-binding domain DYQ05_RS06880 PF03358 NADPH-dependent FMN reductase DYQ05_RS06880 PF00890 FAD binding domain DYQ05_RS06895 PF01546 Peptidase family M20/M25/M40 DYQ05_RS06895 PF07687 Peptidase dimerisation domain DYQ05_RS06900 PF13393 Histidyl-tRNA synthetase DYQ05_RS06910 PF02654 Cobalamin-5-phosphate synthase DYQ05_RS06965 PF01740 STAS domain DYQ05_RS06995 PF01212 Beta-eliminating lyase DYQ05_RS07000 PF00005 ABC transporter DYQ05_RS07010 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS07015 PF01991 ATP synthase (E/31 kDa) subunit DYQ05_RS07040 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYQ05_RS07040 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYQ05_RS07050 PF01212 Beta-eliminating lyase DYQ05_RS07060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS07060 PF00005 ABC transporter DYQ05_RS07065 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS07065 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS07070 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS07075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS07080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS07080 PF00672 HAMP domain DYQ05_RS07080 PF02743 Cache domain DYQ05_RS07100 PF13847 Methyltransferase domain DYQ05_RS07105 PF01496 V-type ATPase 116kDa subunit family DYQ05_RS07120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYQ05_RS07120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DYQ05_RS07125 PF03840 Preprotein translocase SecG subunit DYQ05_RS07135 PF00472 RF-1 domain DYQ05_RS07135 PF03462 PCRF domain DYQ05_RS07140 PF17827 PrmC N-terminal domain DYQ05_RS07140 PF05175 Methyltransferase small domain DYQ05_RS07160 PF04026 SpoVG DYQ05_RS07170 PF01386 Ribosomal L25p family DYQ05_RS07170 PF14693 Ribosomal protein TL5, C-terminal domain DYQ05_RS07175 PF00679 Elongation factor G C-terminus DYQ05_RS07175 PF03764 Elongation factor G, domain IV DYQ05_RS07175 PF03144 Elongation factor Tu domain 2 DYQ05_RS07175 PF00009 Elongation factor Tu GTP binding domain DYQ05_RS07175 PF14492 Elongation Factor G, domain II DYQ05_RS07185 PF02915 Rubrerythrin DYQ05_RS07190 PF02690 Na+/Pi-cotransporter DYQ05_RS07205 PF13520 Amino acid permease DYQ05_RS07210 PF07722 Peptidase C26 DYQ05_RS07215 PF07497 Rho termination factor, RNA-binding domain DYQ05_RS07215 PF07498 Rho termination factor, N-terminal domain DYQ05_RS07215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_RS07230 PF00753 Metallo-beta-lactamase superfamily DYQ05_RS07265 PF12002 MgsA AAA+ ATPase C terminal DYQ05_RS07265 PF16193 AAA C-terminal domain DYQ05_RS07265 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS07270 PF00005 ABC transporter DYQ05_RS07275 PF01458 Uncharacterized protein family (UPF0051) DYQ05_RS07285 PF03466 LysR substrate binding domain DYQ05_RS07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ05_RS07290 PF00005 ABC transporter DYQ05_RS07300 PF13603 Leucyl-tRNA synthetase, Domain 2 DYQ05_RS07300 PF09334 tRNA synthetases class I (M) DYQ05_RS07300 PF08264 Anticodon-binding domain of tRNA DYQ05_RS07300 PF00133 tRNA synthetases class I (I, L, M and V) DYQ05_RS07320 PF09028 Mac 1 DYQ05_RS07330 PF02463 RecF/RecN/SMC N terminal domain DYQ05_RS07330 PF06470 SMC proteins Flexible Hinge Domain DYQ05_RS07340 PF13525 Outer membrane lipoprotein DYQ05_RS07695 PF04055 Radical SAM superfamily DYQ05_RS07695 PF06969 HemN C-terminal domain DYQ05_RS07710 PF01032 FecCD transport family DYQ05_RS07725 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DYQ05_RS07725 PF02843 Phosphoribosylglycinamide synthetase, C domain DYQ05_RS07725 PF02844 Phosphoribosylglycinamide synthetase, N domain DYQ05_RS07730 PF01820 D-ala D-ala ligase N-terminus DYQ05_RS07730 PF07478 D-ala D-ala ligase C-terminus DYQ05_RS07735 PF01256 Carbohydrate kinase DYQ05_RS07735 PF03853 YjeF-related protein N-terminus DYQ05_RS07745 PF03755 YicC-like family, N-terminal region DYQ05_RS07745 PF08340 Domain of unknown function (DUF1732) DYQ05_RS07750 PF08245 Mur ligase middle domain DYQ05_RS07750 PF02875 Mur ligase family, glutamate ligase domain DYQ05_RS07750 PF01225 Mur ligase family, catalytic domain DYQ05_RS07755 PF02875 Mur ligase family, glutamate ligase domain DYQ05_RS07755 PF08245 Mur ligase middle domain DYQ05_RS07760 PF00849 RNA pseudouridylate synthase DYQ05_RS07765 PF00849 RNA pseudouridylate synthase DYQ05_RS07775 PF00398 Ribosomal RNA adenine dimethylase DYQ05_RS07780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYQ05_RS07790 PF01297 Zinc-uptake complex component A periplasmic DYQ05_RS07795 PF00186 Dihydrofolate reductase DYQ05_RS07800 PF00809 Pterin binding enzyme DYQ05_RS07805 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYQ05_RS07805 PF02152 Dihydroneopterin aldolase DYQ05_RS07810 PF01464 Transglycosylase SLT domain DYQ05_RS07810 PF10145 Phage-related minor tail protein DYQ05_RS07810 PF01551 Peptidase family M23 DYQ05_RS07820 PF04542 Sigma-70 region 2 DYQ05_RS07820 PF08281 Sigma-70, region 4 DYQ05_RS07835 PF08544 GHMP kinases C terminal DYQ05_RS07835 PF10509 Galactokinase galactose-binding signature DYQ05_RS07840 PF00795 Carbon-nitrogen hydrolase DYQ05_RS07845 PF02554 Carbon starvation protein CstA DYQ05_RS07850 PF03819 MazG nucleotide pyrophosphohydrolase domain DYQ05_RS07865 PF03572 Peptidase family S41 DYQ05_RS07865 PF13180 PDZ domain DYQ05_RS07870 PF01554 MatE DYQ05_RS07880 PF00696 Amino acid kinase family DYQ05_RS07900 PF13307 Helicase C-terminal domain DYQ05_RS07900 PF06733 DEAD_2 DYQ05_RS08115 PF10996 Beta-Casp domain DYQ05_RS08115 PF00753 Metallo-beta-lactamase superfamily DYQ05_RS08115 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DYQ05_RS08135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DYQ05_RS08135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DYQ05_RS08135 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DYQ05_RS08140 PF12832 MFS_1 like family DYQ05_RS08155 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ05_RS08170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYQ05_RS08170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYQ05_RS08175 PF01728 FtsJ-like methyltransferase DYQ05_RS08195 PF01121 Dephospho-CoA kinase DYQ05_RS08200 PF01367 5'-3' exonuclease, C-terminal SAM fold DYQ05_RS08200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DYQ05_RS08200 PF00476 DNA polymerase family A DYQ05_RS08200 PF01612 3'-5' exonuclease DYQ05_RS08215 PF02885 Glycosyl transferase family, helical bundle domain DYQ05_RS08215 PF00591 Glycosyl transferase family, a/b domain DYQ05_RS08215 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DYQ05_RS08255 PF09335 SNARE associated Golgi protein DYQ05_RS08265 PF00581 Rhodanese-like domain DYQ05_RS08275 PF00924 Mechanosensitive ion channel DYQ05_RS08305 PF00581 Rhodanese-like domain DYQ05_RS08310 PF02627 Carboxymuconolactone decarboxylase family DYQ05_RS08325 PF01380 SIS domain DYQ05_RS08355 PF00206 Lyase DYQ05_RS08355 PF10397 Adenylosuccinate lyase C-terminus DYQ05_RS08360 PF01807 CHC2 zinc finger DYQ05_RS08360 PF08275 DNA primase catalytic core, N-terminal domain DYQ05_RS08365 PF04545 Sigma-70, region 4 DYQ05_RS08365 PF04539 Sigma-70 region 3 DYQ05_RS08365 PF04542 Sigma-70 region 2 DYQ05_RS08365 PF00140 Sigma-70 factor, region 1.2 DYQ05_RS08365 PF03979 Sigma-70 factor, region 1.1 DYQ05_RS08400 PF03717 Penicillin-binding Protein dimerisation domain DYQ05_RS08400 PF00905 Penicillin binding protein transpeptidase domain DYQ05_RS08405 PF01098 Cell cycle protein DYQ05_RS08425 PF16886 ATPsynthase alpha/beta subunit N-term extension DYQ05_RS08425 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_RS08425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_RS08430 PF00672 HAMP domain DYQ05_RS08430 PF02743 Cache domain DYQ05_RS08430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS08445 PF01813 ATP synthase subunit D DYQ05_RS08450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_RS08450 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_RS08455 PF16886 ATPsynthase alpha/beta subunit N-term extension DYQ05_RS08455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_RS08455 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_RS08460 PF00156 Phosphoribosyl transferase domain DYQ05_RS08485 PF01177 Asp/Glu/Hydantoin racemase DYQ05_RS08500 PF00795 Carbon-nitrogen hydrolase DYQ05_RS08515 PF01709 Transcriptional regulator DYQ05_RS08520 PF02142 MGS-like domain DYQ05_RS08520 PF01808 AICARFT/IMPCHase bienzyme DYQ05_RS08525 PF09820 Predicted AAA-ATPase DYQ05_RS08525 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS08530 PF02127 Aminopeptidase I zinc metalloprotease (M18) DYQ05_RS08550 PF07977 FabA-like domain DYQ05_RS08560 PF01235 Sodium:alanine symporter family DYQ05_RS08580 PF02417 Chromate transporter DYQ05_RS08595 PF02562 PhoH-like protein DYQ05_RS08600 PF01966 HD domain DYQ05_RS08600 PF07697 7TM-HD extracellular DYQ05_RS08600 PF07698 7TM receptor with intracellular HD hydrolase DYQ05_RS08605 PF02130 Uncharacterized protein family UPF0054 DYQ05_RS08610 PF00571 CBS domain DYQ05_RS08610 PF03471 Transporter associated domain DYQ05_RS08615 PF00691 OmpA family DYQ05_RS08620 PF09285 Elongation factor P, C-terminal DYQ05_RS08620 PF08207 Elongation factor P (EF-P) KOW-like domain DYQ05_RS08620 PF01132 Elongation factor P (EF-P) OB domain DYQ05_RS08630 PF02517 CPBP intramembrane metalloprotease DYQ05_RS08655 PF08669 Glycine cleavage T-protein C-terminal barrel domain DYQ05_RS08655 PF01571 Aminomethyltransferase folate-binding domain DYQ05_RS08670 PF01597 Glycine cleavage H-protein DYQ05_RS08680 PF02347 Glycine cleavage system P-protein DYQ05_RS08685 PF02609 Exonuclease VII small subunit DYQ05_RS08690 PF08676 MutL C terminal dimerisation domain DYQ05_RS08690 PF01119 DNA mismatch repair protein, C-terminal domain DYQ05_RS08695 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DYQ05_RS08730 PF10502 Signal peptidase, peptidase S26 DYQ05_RS08735 PF04055 Radical SAM superfamily DYQ05_RS08745 PF00301 Rubredoxin DYQ05_RS08755 PF02277 Phosphoribosyltransferase DYQ05_RS08765 PF13277 YmdB-like protein DYQ05_RS08775 PF00348 Polyprenyl synthetase DYQ05_RS08785 PF00005 ABC transporter DYQ05_RS08825 PF01235 Sodium:alanine symporter family DYQ05_RS08835 PF01546 Peptidase family M20/M25/M40 DYQ05_RS08835 PF07687 Peptidase dimerisation domain DYQ05_RS08840 PF17785 PUA-like domain DYQ05_RS08840 PF10672 S-adenosylmethionine-dependent methyltransferase DYQ05_RS08845 PF01165 Ribosomal protein S21 DYQ05_RS08850 PF01653 NAD-dependent DNA ligase adenylation domain DYQ05_RS08850 PF03120 NAD-dependent DNA ligase OB-fold domain DYQ05_RS08850 PF00533 BRCA1 C Terminus (BRCT) domain DYQ05_RS08870 PF00155 Aminotransferase class I and II DYQ05_RS08890 PF05343 M42 glutamyl aminopeptidase DYQ05_RS08895 PF00390 Malic enzyme, N-terminal domain DYQ05_RS08895 PF03949 Malic enzyme, NAD binding domain DYQ05_RS08910 PF04298 Putative neutral zinc metallopeptidase DYQ05_RS08915 PF01189 16S rRNA methyltransferase RsmB/F DYQ05_RS08915 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DYQ05_RS08915 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DYQ05_RS08920 PF00849 RNA pseudouridylate synthase DYQ05_RS08925 PF10672 S-adenosylmethionine-dependent methyltransferase DYQ05_RS08930 PF06971 Putative DNA-binding protein N-terminus DYQ05_RS08930 PF02629 CoA binding domain DYQ05_RS08935 PF00871 Acetokinase family DYQ05_RS08950 PF04055 Radical SAM superfamily DYQ05_RS08955 PF00309 Sigma-54 factor, Activator interacting domain (AID) DYQ05_RS08955 PF04552 Sigma-54, DNA binding domain DYQ05_RS08955 PF04963 Sigma-54 factor, core binding domain DYQ05_RS08980 PF13180 PDZ domain DYQ05_RS08980 PF17820 PDZ domain DYQ05_RS08985 PF02542 YgbB family DYQ05_RS08990 PF02542 YgbB family DYQ05_RS08990 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DYQ05_RS08995 PF02559 CarD-like/TRCF domain DYQ05_RS09010 PF12704 MacB-like periplasmic core domain DYQ05_RS09010 PF02687 FtsX-like permease family DYQ05_RS09010 PF00005 ABC transporter DYQ05_RS09025 PF02687 FtsX-like permease family DYQ05_RS09025 PF12704 MacB-like periplasmic core domain DYQ05_RS09025 PF00005 ABC transporter DYQ05_RS09035 PF01300 Telomere recombination DYQ05_RS09070 PF00563 EAL domain DYQ05_RS09070 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS09070 PF03707 Bacterial signalling protein N terminal repeat DYQ05_RS09085 PF02954 Bacterial regulatory protein, Fis family DYQ05_RS09085 PF00158 Sigma-54 interaction domain DYQ05_RS09085 PF00072 Response regulator receiver domain DYQ05_RS09090 PF00575 S1 RNA binding domain DYQ05_RS09115 PF00005 ABC transporter DYQ05_RS09115 PF17760 UvrA interaction domain DYQ05_RS09115 PF17755 UvrA DNA-binding domain DYQ05_RS09155 PF01476 LysM domain DYQ05_RS09160 PF03553 Na+/H+ antiporter family DYQ05_RS09165 PF01053 Cys/Met metabolism PLP-dependent enzyme DYQ05_RS09185 PF01351 Ribonuclease HII DYQ05_RS09195 PF00005 ABC transporter DYQ05_RS09195 PF12848 ABC transporter DYQ05_RS09200 PF00232 Glycosyl hydrolase family 1 DYQ05_RS09210 PF09820 Predicted AAA-ATPase DYQ05_RS09210 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS09220 PF00773 RNB domain DYQ05_RS09225 PF00082 Subtilase family DYQ05_RS09225 PF05922 Peptidase inhibitor I9 DYQ05_RS09245 PF01263 Aldose 1-epimerase DYQ05_RS09255 PF16745 RsgA N-terminal domain DYQ05_RS09255 PF03193 RsgA GTPase DYQ05_RS09270 PF01921 tRNA synthetases class I (K) DYQ05_RS09275 PF00155 Aminotransferase class I and II DYQ05_RS09285 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYQ05_RS09285 PF05491 RuvB C-terminal winged helix domain DYQ05_RS09285 PF17864 RuvB AAA lid domain DYQ05_RS09295 PF00483 Nucleotidyl transferase DYQ05_RS09300 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS09300 PF07724 AAA domain (Cdc48 subfamily) DYQ05_RS09300 PF02861 Clp amino terminal domain, pathogenicity island component DYQ05_RS09300 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_RS09300 PF17871 AAA lid domain DYQ05_RS09305 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DYQ05_RS09310 PF02151 UvrB/uvrC motif DYQ05_RS09320 PF00005 ABC transporter DYQ05_RS09325 PF12704 MacB-like periplasmic core domain DYQ05_RS09325 PF02687 FtsX-like permease family DYQ05_RS09335 PF00448 SRP54-type protein, GTPase domain DYQ05_RS09335 PF02881 SRP54-type protein, helical bundle domain DYQ05_RS09350 PF00472 RF-1 domain DYQ05_RS09350 PF03462 PCRF domain DYQ05_RS09365 PF00672 HAMP domain DYQ05_RS09365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS09365 PF02743 Cache domain DYQ05_RS09370 PF08534 Redoxin DYQ05_RS09385 PF00679 Elongation factor G C-terminus DYQ05_RS09385 PF03764 Elongation factor G, domain IV DYQ05_RS09385 PF00009 Elongation factor Tu GTP binding domain DYQ05_RS09385 PF14492 Elongation Factor G, domain II DYQ05_RS09385 PF03144 Elongation factor Tu domain 2 DYQ05_RS09390 PF13537 Glutamine amidotransferase domain DYQ05_RS09390 PF00156 Phosphoribosyl transferase domain DYQ05_RS09400 PF03553 Na+/H+ antiporter family DYQ05_RS09400 PF13726 Na+-H+ antiporter family DYQ05_RS09415 PF01264 Chorismate synthase DYQ05_RS09420 PF17932 Tetracyclin repressor-like, C-terminal domain DYQ05_RS09420 PF00440 Bacterial regulatory proteins, tetR family DYQ05_RS09430 PF00005 ABC transporter DYQ05_RS09445 PF16326 ABC transporter C-terminal domain DYQ05_RS09445 PF00005 ABC transporter DYQ05_RS09445 PF12848 ABC transporter DYQ05_RS09450 PF08239 Bacterial SH3 domain DYQ05_RS09475 PF00005 ABC transporter DYQ05_RS09475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS09480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS09480 PF00005 ABC transporter DYQ05_RS09485 PF00005 ABC transporter DYQ05_RS09490 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS09490 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS09495 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS09505 PF01523 Putative modulator of DNA gyrase DYQ05_RS09520 PF00375 Sodium:dicarboxylate symporter family DYQ05_RS09530 PF01973 Protein of unknown function DUF115 DYQ05_RS09535 PF00226 DnaJ domain DYQ05_RS09535 PF01556 DnaJ C terminal domain DYQ05_RS09535 PF00684 DnaJ central domain DYQ05_RS09540 PF00012 Hsp70 protein DYQ05_RS09545 PF01025 GrpE DYQ05_RS09550 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYQ05_RS09555 PF02769 AIR synthase related protein, C-terminal domain DYQ05_RS09555 PF00586 AIR synthase related protein, N-terminal domain DYQ05_RS09560 PF01488 Shikimate / quinate 5-dehydrogenase DYQ05_RS09560 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DYQ05_RS09560 PF08501 Shikimate dehydrogenase substrate binding domain DYQ05_RS09575 PF00456 Transketolase, thiamine diphosphate binding domain DYQ05_RS09575 PF02779 Transketolase, pyrimidine binding domain DYQ05_RS09580 PF02237 Biotin protein ligase C terminal domain DYQ05_RS09580 PF03099 Biotin/lipoate A/B protein ligase family DYQ05_RS09580 PF08279 HTH domain DYQ05_RS09585 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DYQ05_RS09590 PF01039 Carboxyl transferase domain DYQ05_RS09595 PF02785 Biotin carboxylase C-terminal domain DYQ05_RS09595 PF00289 Biotin carboxylase, N-terminal domain DYQ05_RS09595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYQ05_RS09600 PF00364 Biotin-requiring enzyme DYQ05_RS09605 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DYQ05_RS09605 PF12241 Trans-2-enoyl-CoA reductase catalytic region DYQ05_RS09605 PF07055 Enoyl reductase FAD binding domain DYQ05_RS09610 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ05_RS09610 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ05_RS09620 PF00698 Acyl transferase domain DYQ05_RS09625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYQ05_RS09625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ05_RS09635 PF02938 GAD domain DYQ05_RS09635 PF01336 OB-fold nucleic acid binding domain DYQ05_RS09635 PF00152 tRNA synthetases class II (D, K and N) DYQ05_RS09650 PF03062 MBOAT, membrane-bound O-acyltransferase family DYQ05_RS09660 PF01145 SPFH domain / Band 7 family DYQ05_RS09665 PF01145 SPFH domain / Band 7 family DYQ05_RS09680 PF05681 Fumarate hydratase (Fumerase) DYQ05_RS09680 PF05683 Fumarase C-terminus DYQ05_RS09685 PF05681 Fumarate hydratase (Fumerase) DYQ05_RS09690 PF00669 Bacterial flagellin N-terminal helical region DYQ05_RS09690 PF00700 Bacterial flagellin C-terminal helical region DYQ05_RS09695 PF01584 CheW-like domain DYQ05_RS09705 PF01513 ATP-NAD kinase DYQ05_RS09710 PF00005 ABC transporter DYQ05_RS09710 PF00664 ABC transporter transmembrane region DYQ05_RS09720 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYQ05_RS09720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYQ05_RS09725 PF00221 Aromatic amino acid lyase DYQ05_RS09735 PF00005 ABC transporter DYQ05_RS09750 PF03477 ATP cone domain DYQ05_RS09895 PF04073 Aminoacyl-tRNA editing domain DYQ05_RS09895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ05_RS09895 PF03129 Anticodon binding domain DYQ05_RS09900 PF00005 ABC transporter DYQ05_RS09900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS09905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS09905 PF00005 ABC transporter DYQ05_RS09910 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS09910 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS09915 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS09920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS09925 PF00892 EamA-like transporter family DYQ05_RS09930 PF05670 NFACT protein RNA binding domain DYQ05_RS09945 PF08323 Starch synthase catalytic domain DYQ05_RS09945 PF00534 Glycosyl transferases group 1 DYQ05_RS09955 PF04260 Protein of unknown function (DUF436) DYQ05_RS09970 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ05_RS09985 PF18269 T3SS EscN ATPase C-terminal domain DYQ05_RS09985 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_RS09985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_RS09990 PF02108 Flagellar assembly protein FliH DYQ05_RS09995 PF14841 FliG middle domain DYQ05_RS09995 PF14842 FliG N-terminal domain DYQ05_RS09995 PF01706 FliG C-terminal domain DYQ05_RS10000 PF01514 Secretory protein of YscJ/FliF family DYQ05_RS10000 PF08345 Flagellar M-ring protein C-terminal DYQ05_RS10005 PF02049 Flagellar hook-basal body complex protein FliE DYQ05_RS10010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_RS10010 PF00460 Flagella basal body rod protein DYQ05_RS10015 PF00460 Flagella basal body rod protein DYQ05_RS10020 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS10020 PF07724 AAA domain (Cdc48 subfamily) DYQ05_RS10025 PF00227 Proteasome subunit DYQ05_RS10030 PF02899 Phage integrase, N-terminal SAM-like domain DYQ05_RS10030 PF00589 Phage integrase family DYQ05_RS10035 PF01396 Topoisomerase DNA binding C4 zinc finger DYQ05_RS10035 PF01131 DNA topoisomerase DYQ05_RS10035 PF01751 Toprim domain DYQ05_RS10040 PF17782 DprA winged helix domain DYQ05_RS10040 PF02481 DNA recombination-mediator protein A DYQ05_RS10050 PF02899 Phage integrase, N-terminal SAM-like domain DYQ05_RS10050 PF00589 Phage integrase family DYQ05_RS10055 PF12327 FtsZ family, C-terminal domain DYQ05_RS10055 PF00091 Tubulin/FtsZ family, GTPase domain DYQ05_RS10060 PF02491 SHS2 domain inserted in FTSA DYQ05_RS10070 PF01098 Cell cycle protein DYQ05_RS10075 PF01225 Mur ligase family, catalytic domain DYQ05_RS10075 PF08245 Mur ligase middle domain DYQ05_RS10075 PF02875 Mur ligase family, glutamate ligase domain DYQ05_RS10090 PF02381 MraZ protein, putative antitoxin-like DYQ05_RS10100 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYQ05_RS10100 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYQ05_RS10105 PF10282 Lactonase, 7-bladed beta-propeller DYQ05_RS10115 PF00270 DEAD/DEAH box helicase DYQ05_RS10115 PF00271 Helicase conserved C-terminal domain DYQ05_RS10120 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS10125 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) DYQ05_RS10130 PF09338 Glycine/sarcosine/betaine reductase component B subunits DYQ05_RS10140 PF09186 Domain of unknown function (DUF1949) DYQ05_RS10140 PF01205 Uncharacterized protein family UPF0029 DYQ05_RS10160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS10165 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS10170 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS10175 PF00005 ABC transporter DYQ05_RS10175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS10185 PF08241 Methyltransferase domain DYQ05_RS10190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYQ05_RS10200 PF06421 GTP-binding protein LepA C-terminus DYQ05_RS10200 PF00009 Elongation factor Tu GTP binding domain DYQ05_RS10200 PF14492 Elongation Factor G, domain II DYQ05_RS10200 PF00679 Elongation factor G C-terminus DYQ05_RS10200 PF03144 Elongation factor Tu domain 2 DYQ05_RS10205 PF00156 Phosphoribosyl transferase domain DYQ05_RS10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS10210 PF00672 HAMP domain DYQ05_RS10210 PF02743 Cache domain DYQ05_RS10220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYQ05_RS10220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYQ05_RS10220 PF13288 DXP reductoisomerase C-terminal domain DYQ05_RS10230 PF01255 Putative undecaprenyl diphosphate synthase DYQ05_RS10235 PF01765 Ribosome recycling factor DYQ05_RS10240 PF00889 Elongation factor TS DYQ05_RS10245 PF00318 Ribosomal protein S2 DYQ05_RS10280 PF05593 RHS Repeat DYQ05_RS10280 PF05488 PAAR motif DYQ05_RS10290 PF11429 Colicin D DYQ05_RS10290 PF06958 S-type Pyocin DYQ05_RS10290 PF03515 Colicin-like bacteriocin tRNase domain DYQ05_RS10320 PF05593 RHS Repeat DYQ05_RS10320 PF03527 RHS protein DYQ05_RS10330 PF05593 RHS Repeat DYQ05_RS10330 PF03527 RHS protein DYQ05_RS10330 PF14220 Domain of unknown function (DUF4329) DYQ05_RS10340 PF05488 PAAR motif DYQ05_RS10340 PF05593 RHS Repeat DYQ05_RS10355 PF05593 RHS Repeat DYQ05_RS10355 PF05488 PAAR motif DYQ05_RS10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS10380 PF00672 HAMP domain DYQ05_RS10380 PF02743 Cache domain DYQ05_RS10395 PF01523 Putative modulator of DNA gyrase DYQ05_RS10400 PF06857 Malonate decarboxylase delta subunit (MdcD) DYQ05_RS10405 PF03328 HpcH/HpaI aldolase/citrate lyase family DYQ05_RS10410 PF04223 Citrate lyase, alpha subunit (CitF) DYQ05_RS10415 PF09107 Elongation factor SelB, winged helix DYQ05_RS10415 PF09106 Elongation factor SelB, winged helix DYQ05_RS10415 PF09105 Elongation factor SelB, winged helix DYQ05_RS10415 PF03144 Elongation factor Tu domain 2 DYQ05_RS10415 PF00009 Elongation factor Tu GTP binding domain DYQ05_RS10425 PF01176 Translation initiation factor 1A / IF-1 DYQ05_RS10430 PF00226 DnaJ domain DYQ05_RS10430 PF00684 DnaJ central domain DYQ05_RS10430 PF01556 DnaJ C terminal domain DYQ05_RS10435 PF00696 Amino acid kinase family DYQ05_RS10440 PF01648 4'-phosphopantetheinyl transferase superfamily DYQ05_RS10450 PF02457 DisA bacterial checkpoint controller nucleotide-binding DYQ05_RS10455 PF02780 Transketolase, C-terminal domain DYQ05_RS10455 PF02779 Transketolase, pyrimidine binding domain DYQ05_RS10455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYQ05_RS10460 PF17820 PDZ domain DYQ05_RS10460 PF13180 PDZ domain DYQ05_RS10465 PF02545 Maf-like protein DYQ05_RS10480 PF00700 Bacterial flagellin C-terminal helical region DYQ05_RS10480 PF00669 Bacterial flagellin N-terminal helical region DYQ05_RS10485 PF00669 Bacterial flagellin N-terminal helical region DYQ05_RS10485 PF00700 Bacterial flagellin C-terminal helical region DYQ05_RS10490 PF03646 FlaG protein DYQ05_RS10495 PF02465 Flagellar hook-associated protein 2 N-terminus DYQ05_RS10495 PF07195 Flagellar hook-associated protein 2 C-terminus DYQ05_RS10510 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DYQ05_RS10520 PF00072 Response regulator receiver domain DYQ05_RS10525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ05_RS10525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ05_RS10525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ05_RS10525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ05_RS10530 PF00929 Exonuclease DYQ05_RS10535 PF02954 Bacterial regulatory protein, Fis family DYQ05_RS10535 PF00158 Sigma-54 interaction domain DYQ05_RS10535 PF00072 Response regulator receiver domain DYQ05_RS10545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYQ05_RS10595 PF13186 Iron-sulfur cluster-binding domain DYQ05_RS10610 PF01625 Peptide methionine sulfoxide reductase DYQ05_RS10610 PF01641 SelR domain DYQ05_RS10620 PF02623 FliW protein DYQ05_RS10625 PF02599 Global regulator protein family DYQ05_RS10630 PF05857 TraX protein DYQ05_RS10635 PF00579 tRNA synthetases class I (W and Y) DYQ05_RS10645 PF00890 FAD binding domain DYQ05_RS10645 PF14537 Cytochrome c3 DYQ05_RS10675 PF01078 Magnesium chelatase, subunit ChlI DYQ05_RS10675 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYQ05_RS10680 PF03806 AbgT putative transporter family DYQ05_RS10690 PF04551 GcpE protein DYQ05_RS10710 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS10710 PF04324 BFD-like [2Fe-2S] binding domain DYQ05_RS10715 PF01266 FAD dependent oxidoreductase DYQ05_RS10720 PF00460 Flagella basal body rod protein DYQ05_RS10720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_RS10725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYQ05_RS10725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYQ05_RS10740 PF01029 NusB family DYQ05_RS10745 PF13145 PPIC-type PPIASE domain DYQ05_RS10750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYQ05_RS10750 PF01411 tRNA synthetases class II (A) DYQ05_RS10780 PF01195 Peptidyl-tRNA hydrolase DYQ05_RS10790 PF00391 PEP-utilising enzyme, mobile domain DYQ05_RS10790 PF02887 Pyruvate kinase, alpha/beta domain DYQ05_RS10790 PF00224 Pyruvate kinase, barrel domain DYQ05_RS10795 PF00326 Prolyl oligopeptidase family DYQ05_RS10810 PF00551 Formyl transferase DYQ05_RS10835 PF02810 SEC-C motif DYQ05_RS10835 PF07516 SecA Wing and Scaffold domain DYQ05_RS10835 PF01043 SecA preprotein cross-linking domain DYQ05_RS10835 PF07517 SecA DEAD-like domain DYQ05_RS10840 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS10840 PF09820 Predicted AAA-ATPase DYQ05_RS10850 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS10875 PF08668 HDOD domain DYQ05_RS10885 PF13545 Crp-like helix-turn-helix domain DYQ05_RS10885 PF00027 Cyclic nucleotide-binding domain DYQ05_RS10890 PF01252 Signal peptidase (SPase) II DYQ05_RS10895 PF02424 ApbE family DYQ05_RS10900 PF05958 tRNA (Uracil-5-)-methyltransferase DYQ05_RS10940 PF03781 Sulfatase-modifying factor enzyme 1 DYQ05_RS10945 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS10945 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYQ05_RS10950 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYQ05_RS10950 PF00037 4Fe-4S binding domain DYQ05_RS10950 PF02256 Iron hydrogenase small subunit DYQ05_RS10950 PF02906 Iron only hydrogenase large subunit, C-terminal domain DYQ05_RS10955 PF04055 Radical SAM superfamily DYQ05_RS10955 PF01938 TRAM domain DYQ05_RS10955 PF00919 Uncharacterized protein family UPF0004 DYQ05_RS10960 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DYQ05_RS10960 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DYQ05_RS10965 PF01891 Cobalt uptake substrate-specific transmembrane region DYQ05_RS10975 PF01008 Initiation factor 2 subunit family DYQ05_RS10995 PF00118 TCP-1/cpn60 chaperonin family DYQ05_RS11010 PF07009 NusG domain II DYQ05_RS11015 PF02687 FtsX-like permease family DYQ05_RS11015 PF00005 ABC transporter DYQ05_RS11015 PF12704 MacB-like periplasmic core domain DYQ05_RS11020 PF01136 Peptidase family U32 DYQ05_RS11020 PF16325 Peptidase family U32 C-terminal domain DYQ05_RS11025 PF07859 alpha/beta hydrolase fold DYQ05_RS11030 PF00005 ABC transporter DYQ05_RS11030 PF00664 ABC transporter transmembrane region DYQ05_RS11050 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS11050 PF09820 Predicted AAA-ATPase DYQ05_RS11060 PF00005 ABC transporter DYQ05_RS11075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYQ05_RS11080 PF06745 KaiC DYQ05_RS11080 PF18073 Rubredoxin metal binding domain DYQ05_RS11130 PF00005 ABC transporter DYQ05_RS11135 PF02355 Protein export membrane protein DYQ05_RS11140 PF02355 Protein export membrane protein DYQ05_RS11145 PF02699 Preprotein translocase subunit DYQ05_RS11150 PF01783 Ribosomal L32p protein family DYQ05_RS11155 PF00550 Phosphopantetheine attachment site DYQ05_RS11160 PF00035 Double-stranded RNA binding motif DYQ05_RS11160 PF14622 Ribonuclease-III-like DYQ05_RS11165 PF00270 DEAD/DEAH box helicase DYQ05_RS11165 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DYQ05_RS11165 PF18074 Primosomal protein N C-terminal domain DYQ05_RS11165 PF17764 3′ DNA-binding domain (3′BD) DYQ05_RS11165 PF00271 Helicase conserved C-terminal domain DYQ05_RS11170 PF03167 Uracil DNA glycosylase superfamily DYQ05_RS11180 PF00579 tRNA synthetases class I (W and Y) DYQ05_RS11185 PF05191 Adenylate kinase, active site lid DYQ05_RS11205 PF01551 Peptidase family M23 DYQ05_RS11205 PF04225 Opacity-associated protein A LysM-like domain DYQ05_RS11225 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DYQ05_RS11225 PF12733 Cadherin-like beta sandwich domain DYQ05_RS11240 PF04851 Type III restriction enzyme, res subunit DYQ05_RS11240 PF00271 Helicase conserved C-terminal domain DYQ05_RS11240 PF02151 UvrB/uvrC motif DYQ05_RS11240 PF12344 Ultra-violet resistance protein B DYQ05_RS11240 PF17757 UvrB interaction domain DYQ05_RS11245 PF01197 Ribosomal protein L31 DYQ05_RS11260 PF10415 Fumarase C C-terminus DYQ05_RS11260 PF00206 Lyase DYQ05_RS11265 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS11265 PF09820 Predicted AAA-ATPase DYQ05_RS11270 PF17757 UvrB interaction domain DYQ05_RS11270 PF00270 DEAD/DEAH box helicase DYQ05_RS11270 PF00271 Helicase conserved C-terminal domain DYQ05_RS11270 PF03461 TRCF domain DYQ05_RS11270 PF02559 CarD-like/TRCF domain DYQ05_RS11285 PF00403 Heavy-metal-associated domain DYQ05_RS11290 PF01022 Bacterial regulatory protein, arsR family DYQ05_RS11305 PF00005 ABC transporter DYQ05_RS11310 PF00588 SpoU rRNA Methylase family DYQ05_RS11315 PF11849 Domain of unknown function (DUF3369) DYQ05_RS11320 PF12390 Selenocysteine synthase N terminal DYQ05_RS11320 PF03841 L-seryl-tRNA selenium transferase DYQ05_RS11325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYQ05_RS11325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYQ05_RS11335 PF04002 RadC-like JAB domain DYQ05_RS11335 PF12826 Helix-hairpin-helix motif DYQ05_RS11340 PF00578 AhpC/TSA family DYQ05_RS11350 PF12801 4Fe-4S binding domain DYQ05_RS11350 PF04205 FMN-binding domain DYQ05_RS11355 PF00664 ABC transporter transmembrane region DYQ05_RS11355 PF00005 ABC transporter DYQ05_RS11390 PF03033 Glycosyltransferase family 28 N-terminal domain DYQ05_RS11390 PF04101 Glycosyltransferase family 28 C-terminal domain DYQ05_RS11400 PF00440 Bacterial regulatory proteins, tetR family DYQ05_RS11400 PF08361 MAATS-type transcriptional repressor, C-terminal region DYQ05_RS11405 PF04954 Siderophore-interacting protein DYQ05_RS11405 PF00005 ABC transporter DYQ05_RS11405 PF08021 Siderophore-interacting FAD-binding domain DYQ05_RS11405 PF00664 ABC transporter transmembrane region DYQ05_RS11415 PF00005 ABC transporter DYQ05_RS11415 PF00664 ABC transporter transmembrane region DYQ05_RS11430 PF00583 Acetyltransferase (GNAT) family DYQ05_RS11545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ05_RS11590 PF00849 RNA pseudouridylate synthase DYQ05_RS11590 PF01479 S4 domain DYQ05_RS11605 PF10531 SLBB domain DYQ05_RS11605 PF13375 RnfC Barrel sandwich hybrid domain DYQ05_RS11605 PF13237 4Fe-4S dicluster domain DYQ05_RS11605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ05_RS11635 PF02245 Methylpurine-DNA glycosylase (MPG) DYQ05_RS11655 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS11660 PF17912 MalK OB fold domain DYQ05_RS11660 PF03459 TOBE domain DYQ05_RS11660 PF00005 ABC transporter DYQ05_RS11665 PF02446 4-alpha-glucanotransferase DYQ05_RS11670 PF00005 ABC transporter DYQ05_RS11675 PF00005 ABC transporter DYQ05_RS11680 PF02576 RimP N-terminal domain DYQ05_RS11680 PF17384 RimP C-terminal SH3 domain DYQ05_RS11685 PF13184 NusA-like KH domain DYQ05_RS11685 PF08529 NusA N-terminal domain DYQ05_RS11685 PF00575 S1 RNA binding domain DYQ05_RS11690 PF11987 Translation-initiation factor 2 DYQ05_RS11690 PF00009 Elongation factor Tu GTP binding domain DYQ05_RS11690 PF04760 Translation initiation factor IF-2, N-terminal region DYQ05_RS11695 PF02033 Ribosome-binding factor A DYQ05_RS11700 PF01509 TruB family pseudouridylate synthase (N terminal domain) DYQ05_RS11715 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYQ05_RS11720 PF00164 Ribosomal protein S12/S23 DYQ05_RS11725 PF00177 Ribosomal protein S7p/S5e DYQ05_RS11730 PF00877 NlpC/P60 family DYQ05_RS11735 PF13193 AMP-binding enzyme C-terminal domain DYQ05_RS11735 PF00501 AMP-binding enzyme DYQ05_RS11780 PF00005 ABC transporter DYQ05_RS11785 PF12683 Protein of unknown function (DUF3798) DYQ05_RS11800 PF01784 NIF3 (NGG1p interacting factor 3) DYQ05_RS11815 PF02637 GatB domain DYQ05_RS11815 PF02934 GatB/GatE catalytic domain DYQ05_RS11820 PF00106 short chain dehydrogenase DYQ05_RS11825 PF04127 DNA / pantothenate metabolism flavoprotein DYQ05_RS11825 PF02441 Flavoprotein DYQ05_RS11845 PF04011 LemA family DYQ05_RS11850 PF01259 SAICAR synthetase DYQ05_RS11855 PF00731 AIR carboxylase DYQ05_RS11870 PF00005 ABC transporter DYQ05_RS11875 PF00005 ABC transporter DYQ05_RS11900 PF00691 OmpA family DYQ05_RS11905 PF01476 LysM domain DYQ05_RS11905 PF08239 Bacterial SH3 domain DYQ05_RS11905 PF00877 NlpC/P60 family DYQ05_RS11920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS11920 PF00005 ABC transporter DYQ05_RS11925 PF00005 ABC transporter DYQ05_RS11925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_RS11930 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS11930 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_RS11935 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS11945 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ05_RS11945 PF00326 Prolyl oligopeptidase family DYQ05_RS11960 PF01467 Cytidylyltransferase-like DYQ05_RS11985 PF12627 Probable RNA and SrmB- binding site of polymerase A DYQ05_RS11985 PF01743 Poly A polymerase head domain DYQ05_RS11985 PF12626 Polymerase A arginine-rich C-terminus DYQ05_RS12010 PF01966 HD domain DYQ05_RS12025 PF02386 Cation transport protein DYQ05_RS12030 PF02254 TrkA-N domain DYQ05_RS12030 PF02080 TrkA-C domain DYQ05_RS12055 PF01168 Alanine racemase, N-terminal domain DYQ05_RS12055 PF00842 Alanine racemase, C-terminal domain DYQ05_RS12060 PF02401 LytB protein DYQ05_RS12065 PF03330 Lytic transglycolase DYQ05_RS12070 PF00707 Translation initiation factor IF-3, C-terminal domain DYQ05_RS12070 PF05198 Translation initiation factor IF-3, N-terminal domain DYQ05_RS12075 PF01632 Ribosomal protein L35 DYQ05_RS12080 PF00453 Ribosomal protein L20 DYQ05_RS12090 PF05164 Cell division protein ZapA DYQ05_RS12095 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DYQ05_RS12105 PF00005 ABC transporter DYQ05_RS12110 PF00005 ABC transporter DYQ05_RS12115 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS12120 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_RS12125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_RS12130 PF13673 Acetyltransferase (GNAT) domain DYQ05_RS12135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS12135 PF00672 HAMP domain DYQ05_RS12135 PF02743 Cache domain DYQ05_RS12140 PF02743 Cache domain DYQ05_RS12140 PF00672 HAMP domain DYQ05_RS12140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS12145 PF02743 Cache domain DYQ05_RS12145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS12145 PF00672 HAMP domain DYQ05_RS12155 PF02719 Polysaccharide biosynthesis protein DYQ05_RS12170 PF01245 Ribosomal protein L19 DYQ05_RS12175 PF01746 tRNA (Guanine-1)-methyltransferase DYQ05_RS12180 PF01782 RimM N-terminal domain DYQ05_RS12190 PF00886 Ribosomal protein S16 DYQ05_RS12195 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ05_RS12195 PF05524 PEP-utilising enzyme, N-terminal DYQ05_RS12195 PF00391 PEP-utilising enzyme, mobile domain DYQ05_RS12205 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYQ05_RS12205 PF01926 50S ribosome-binding GTPase DYQ05_RS12215 PF17922 Tetracyclin repressor-like, C-terminal domain DYQ05_RS12215 PF00440 Bacterial regulatory proteins, tetR family DYQ05_RS12225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ05_RS12225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ05_RS12225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ05_RS12225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ05_RS12230 PF02308 MgtC family DYQ05_RS12250 PF00005 ABC transporter DYQ05_RS12255 PF06832 Penicillin-Binding Protein C-terminus Family DYQ05_RS12255 PF00912 Transglycosylase DYQ05_RS12255 PF00905 Penicillin binding protein transpeptidase domain DYQ05_RS12260 PF02190 ATP-dependent protease La (LON) substrate-binding domain DYQ05_RS12260 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS12260 PF05362 Lon protease (S16) C-terminal proteolytic domain DYQ05_RS12275 PF01026 TatD related DNase DYQ05_RS12285 PF02769 AIR synthase related protein, C-terminal domain DYQ05_RS12285 PF00586 AIR synthase related protein, N-terminal domain DYQ05_RS12290 PF01835 MG2 domain DYQ05_RS12290 PF17962 Bacterial macroglobulin domain 6 DYQ05_RS12290 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DYQ05_RS12290 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DYQ05_RS12290 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DYQ05_RS12290 PF07703 Alpha-2-macroglobulin bait region domain DYQ05_RS12290 PF00207 Alpha-2-macroglobulin family DYQ05_RS12300 PF02674 Colicin V production protein DYQ05_RS12315 PF00578 AhpC/TSA family DYQ05_RS12315 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYQ05_RS12320 PF03372 Endonuclease/Exonuclease/phosphatase family DYQ05_RS12325 PF00557 Metallopeptidase family M24 DYQ05_RS12330 PF00226 DnaJ domain DYQ05_RS12330 PF00684 DnaJ central domain DYQ05_RS12330 PF01556 DnaJ C terminal domain DYQ05_RS12345 PF00211 Adenylate and Guanylate cyclase catalytic domain DYQ05_RS12345 PF00672 HAMP domain DYQ05_RS12390 PF00830 Ribosomal L28 family DYQ05_RS12405 PF03193 RsgA GTPase DYQ05_RS12415 PF00005 ABC transporter DYQ05_RS12420 PF01032 FecCD transport family DYQ05_RS12425 PF00005 ABC transporter DYQ05_RS12425 PF00664 ABC transporter transmembrane region DYQ05_RS12440 PF00664 ABC transporter transmembrane region DYQ05_RS12440 PF00005 ABC transporter DYQ05_RS12450 PF00005 ABC transporter DYQ05_RS12450 PF00664 ABC transporter transmembrane region DYQ05_RS12460 PF01196 Ribosomal protein L17 DYQ05_RS12465 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DYQ05_RS12465 PF01000 RNA polymerase Rpb3/RpoA insert domain DYQ05_RS12465 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DYQ05_RS12470 PF00411 Ribosomal protein S11 DYQ05_RS12475 PF00416 Ribosomal protein S13/S18 DYQ05_RS12480 PF00444 Ribosomal protein L36 DYQ05_RS12485 PF00344 SecY translocase DYQ05_RS12490 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DYQ05_RS12495 PF00327 Ribosomal protein L30p/L7e DYQ05_RS12500 PF00333 Ribosomal protein S5, N-terminal domain DYQ05_RS12500 PF03719 Ribosomal protein S5, C-terminal domain DYQ05_RS12505 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DYQ05_RS12510 PF00347 Ribosomal protein L6 DYQ05_RS12515 PF00410 Ribosomal protein S8 DYQ05_RS12520 PF00253 Ribosomal protein S14p/S29e DYQ05_RS12525 PF00673 ribosomal L5P family C-terminus DYQ05_RS12525 PF00281 Ribosomal protein L5 DYQ05_RS12530 PF00467 KOW motif DYQ05_RS12530 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DYQ05_RS12535 PF00238 Ribosomal protein L14p/L23e DYQ05_RS12540 PF00366 Ribosomal protein S17 DYQ05_RS12545 PF00831 Ribosomal L29 protein DYQ05_RS12550 PF00252 Ribosomal protein L16p/L10e DYQ05_RS12555 PF00189 Ribosomal protein S3, C-terminal domain DYQ05_RS12555 PF07650 KH domain DYQ05_RS12560 PF00237 Ribosomal protein L22p/L17e DYQ05_RS12565 PF00203 Ribosomal protein S19 DYQ05_RS12570 PF03947 Ribosomal Proteins L2, C-terminal domain DYQ05_RS12570 PF00181 Ribosomal Proteins L2, RNA binding domain DYQ05_RS12575 PF00276 Ribosomal protein L23 DYQ05_RS12580 PF00573 Ribosomal protein L4/L1 family DYQ05_RS12585 PF00297 Ribosomal protein L3 DYQ05_RS12590 PF00338 Ribosomal protein S10p/S20e DYQ05_RS12600 PF07726 ATPase family associated with various cellular activities (AAA) DYQ05_RS12600 PF17863 AAA lid domain DYQ05_RS12605 PF02511 Thymidylate synthase complementing protein DYQ05_RS12635 PF17862 AAA+ lid domain DYQ05_RS12635 PF01434 Peptidase family M41 DYQ05_RS12635 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_RS12650 PF00672 HAMP domain DYQ05_RS12650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_RS12650 PF02743 Cache domain DYQ05_RS12665 PF00934 PE family DYQ05_RS12665 PF07859 alpha/beta hydrolase fold DYQ05_RS12685 PF17191 RecG wedge domain DYQ05_RS12685 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DYQ05_RS12685 PF00270 DEAD/DEAH box helicase DYQ05_RS12710 PF12848 ABC transporter DYQ05_RS12710 PF00005 ABC transporter DYQ05_RS12725 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_RS12725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ05_RS12740 PF12733 Cadherin-like beta sandwich domain DYQ05_RS12740 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DYQ05_RS12755 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS12755 PF09820 Predicted AAA-ATPase DYQ05_RS12760 PF12833 Helix-turn-helix domain DYQ05_RS12760 PF06445 GyrI-like small molecule binding domain DYQ05_RS12765 PF13280 WYL domain DYQ05_RS12765 PF08279 HTH domain DYQ05_RS12780 PF06445 GyrI-like small molecule binding domain DYQ05_RS12780 PF12833 Helix-turn-helix domain DYQ05_RS12800 PF04205 FMN-binding domain DYQ05_RS12800 PF00890 FAD binding domain DYQ05_RS12805 PF00005 ABC transporter DYQ05_RS12810 PF01032 FecCD transport family DYQ05_RS12815 PF01032 FecCD transport family DYQ05_RS12820 PF01032 FecCD transport family DYQ05_RS12825 PF01497 Periplasmic binding protein DYQ05_RS12870 PF09820 Predicted AAA-ATPase DYQ05_RS12870 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS12875 PF05362 Lon protease (S16) C-terminal proteolytic domain DYQ05_RS12875 PF13654 AAA domain DYQ05_RS12885 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS12885 PF08448 PAS fold DYQ05_RS12890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_RS12895 PF05175 Methyltransferase small domain DYQ05_RS12910 PF02132 RecR protein DYQ05_RS12910 PF13662 Toprim domain DYQ05_RS12915 PF02575 YbaB/EbfC DNA-binding family DYQ05_RS12920 PF00586 AIR synthase related protein, N-terminal domain DYQ05_RS12920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DYQ05_RS12920 PF02769 AIR synthase related protein, C-terminal domain DYQ05_RS12935 PF00121 Triosephosphate isomerase DYQ05_RS12940 PF16363 GDP-mannose 4,6 dehydratase DYQ05_RS12945 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYQ05_RS12945 PF02772 S-adenosylmethionine synthetase, central domain DYQ05_RS12945 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYQ05_RS12950 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_RS12950 PF09820 Predicted AAA-ATPase DYQ05_RS12955 PF01554 MatE DYQ05_RS12960 PF02911 Formyl transferase, C-terminal domain DYQ05_RS12960 PF00551 Formyl transferase DYQ05_RS12965 PF01327 Polypeptide deformylase DYQ05_RS12970 PF00300 Histidine phosphatase superfamily (branch 1) DYQ05_RS12980 PF03793 PASTA domain DYQ05_RS12990 PF03796 DnaB-like helicase C terminal domain DYQ05_RS12990 PF00772 DnaB-like helicase N terminal domain DYQ05_RS13005 PF00488 MutS domain V DYQ05_RS13005 PF01713 Smr domain DYQ05_RS13020 PF00092 von Willebrand factor type A domain DYQ05_RS13020 PF07584 Aerotolerance regulator N-terminal DYQ05_RS13035 PF01882 Protein of unknown function DUF58 DYQ05_RS13045 PF17131 Outer membrane lipoprotein-sorting protein DYQ05_RS13055 PF00440 Bacterial regulatory proteins, tetR family DYQ05_RS13070 PF00950 ABC 3 transport family DYQ05_RS13075 PF00005 ABC transporter DYQ05_RS13080 PF01297 Zinc-uptake complex component A periplasmic DYQ05_RS13100 PF02146 Sir2 family DYQ05_RS13105 PF01381 Helix-turn-helix DYQ05_RS13115 PF03186 CobD/Cbib protein DYQ05_RS13120 PF00365 Phosphofructokinase DYQ05_RS13130 PF01751 Toprim domain DYQ05_RS13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_RS13130 PF00986 DNA gyrase B subunit, carboxyl terminus DYQ05_RS13130 PF00204 DNA gyrase B DYQ05_RS13140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYQ05_RS13150 PF14804 Jag N-terminus DYQ05_RS13150 PF01424 R3H domain DYQ05_RS13155 PF14849 YidC periplasmic domain DYQ05_RS13155 PF02096 60Kd inner membrane protein DYQ05_RS13160 PF01809 Putative membrane protein insertion efficiency factor DYQ05_RS13165 PF00825 Ribonuclease P DYQ05_RS13170 PF00468 Ribosomal protein L34 DYQ05_RS13175 PF07670 Nucleoside recognition DYQ05_RS13180 PF01048 Phosphorylase superfamily DYQ05_RS13210 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS13210 PF17158 Membrane-associated sensor, integral membrane domain DYQ05_RS13220 PF03707 Bacterial signalling protein N terminal repeat DYQ05_RS13220 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_RS13220 PF00563 EAL domain DYQ05_RS13235 PF12706 Beta-lactamase superfamily domain DYQ05_RS13235 PF00753 Metallo-beta-lactamase superfamily DYQ05_RS13240 PF14841 FliG middle domain DYQ05_RS13240 PF14842 FliG N-terminal domain DYQ05_RS13240 PF01706 FliG C-terminal domain DYQ05_RS13245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_RS13245 PF00460 Flagella basal body rod protein DYQ05_RS13250 PF10135 Rod binding protein DYQ05_RS13255 PF01565 FAD binding domain DYQ05_RS13255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DYQ05_RS13300 PF00005 ABC transporter DYQ05_RS13305 PF00270 DEAD/DEAH box helicase DYQ05_RS13305 PF00271 Helicase conserved C-terminal domain DYQ05_RS13305 PF00570 HRDC domain DYQ05_RS13305 PF16124 RecQ zinc-binding DYQ05_RS13305 PF09382 RQC domain DYQ05_RS13310 PF00986 DNA gyrase B subunit, carboxyl terminus DYQ05_RS13310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_RS13310 PF01751 Toprim domain DYQ05_RS13310 PF00204 DNA gyrase B