locus-tag	class	description
DYQ05_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DYQ05_RS00015	COG2235	arginine
DYQ05_RS00020	COG0017	Asparaginyl-tRNA synthetase
DYQ05_RS00025	COG1686	Belongs to the peptidase S11 family
DYQ05_RS00040	COG0840	transmembrane signaling receptor activity
DYQ05_RS00065	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DYQ05_RS00095	COG0728	peptidoglycan biosynthetic process
DYQ05_RS00100	COG0786	glutamate:sodium symporter activity
DYQ05_RS00120	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DYQ05_RS00145	COG2885	chlorophyll binding
DYQ05_RS00150	COG0840	transmembrane signaling receptor activity
DYQ05_RS00155	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DYQ05_RS00165	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DYQ05_RS00170	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DYQ05_RS00185	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYQ05_RS00185	COG0574	Belongs to the PEP-utilizing enzyme family
DYQ05_RS00200	COG2304	oxidoreductase activity
DYQ05_RS00210	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DYQ05_RS00220	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS00225	COG1120	ATPase activity
DYQ05_RS00250	COG4750	Nucleotidyl transferase
DYQ05_RS00275	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYQ05_RS00280	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS00290	COG0588	phosphoglycerate mutase activity
DYQ05_RS00305	COG2033	superoxide reductase activity
DYQ05_RS00315	COG0534	Mate efflux family protein
DYQ05_RS00610	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS00615	COG0601	transmembrane transport
DYQ05_RS00625	COG1917	Cupin 2, conserved barrel domain protein
DYQ05_RS00625	COG4977	sequence-specific DNA binding
DYQ05_RS00630	COG0840	transmembrane signaling receptor activity
DYQ05_RS00630	COG3290	protein histidine kinase activity
DYQ05_RS00680	COG0455	bacterial-type flagellum organization
DYQ05_RS00690	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DYQ05_RS00720	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DYQ05_RS00735	COG3949	Membrane
DYQ05_RS00760	COG0840	transmembrane signaling receptor activity
DYQ05_RS00765	COG0542	response to heat
DYQ05_RS00770	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DYQ05_RS00820	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DYQ05_RS00835	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DYQ05_RS00840	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ05_RS00845	COG0037	tRNA processing
DYQ05_RS00850	COG0457	Tetratricopeptide repeat
DYQ05_RS00855	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ05_RS00860	COG1073	alpha beta
DYQ05_RS00885	COG1373	ATPase (AAA superfamily
DYQ05_RS00900	COG1086	Polysaccharide biosynthesis protein
DYQ05_RS00905	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DYQ05_RS00920	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DYQ05_RS00925	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DYQ05_RS00945	COG2089	acid synthase
DYQ05_RS00950	COG1083	cytidylyl-transferase
DYQ05_RS00955	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYQ05_RS01000	COG3475	LICD family
DYQ05_RS01045	COG1760	l-serine dehydratase
DYQ05_RS01050	COG1760	l-serine dehydratase
DYQ05_RS01055	COG1114	Component of the transport system for branched-chain amino acids
DYQ05_RS01070	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ05_RS01130	COG1570	exodeoxyribonuclease VII activity
DYQ05_RS01140	COG1129	ABC transporter
DYQ05_RS01145	COG3493	citrate carrier protein
DYQ05_RS01150	COG1879	ABC-type sugar transport system periplasmic component
DYQ05_RS01155	COG1840	ABC-type Fe3 transport system, periplasmic component
DYQ05_RS01160	COG0438	transferase activity, transferring glycosyl groups
DYQ05_RS01165	COG3842	ATPase activity
DYQ05_RS01175	COG0148	phosphopyruvate hydratase activity
DYQ05_RS01185	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ05_RS01190	COG1116	anion transmembrane transporter activity
DYQ05_RS01235	COG0569	domain protein
DYQ05_RS01245	COG0504	CTP synthase activity
DYQ05_RS01280	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DYQ05_RS01350	COG1120	ATPase activity
DYQ05_RS01440	COG1122	ATPase activity
DYQ05_RS01445	COG1268	BioY protein
DYQ05_RS01455	COG1652	LysM domain
DYQ05_RS01460	COG0516	GMP reductase activity
DYQ05_RS01460	COG0517	IMP dehydrogenase activity
DYQ05_RS01475	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
DYQ05_RS01510	COG0569	domain protein
DYQ05_RS01515	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DYQ05_RS01545	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DYQ05_RS01560	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DYQ05_RS01580	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DYQ05_RS01590	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DYQ05_RS01605	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ05_RS01615	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DYQ05_RS01650	COG2226	methyltransferase
DYQ05_RS01705	COG1132	(ABC) transporter
DYQ05_RS01710	COG1132	(ABC) transporter
DYQ05_RS01715	COG1132	(ABC) transporter
DYQ05_RS01725	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DYQ05_RS01730	COG3876	Protein conserved in bacteria
DYQ05_RS01735	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DYQ05_RS01765	COG1122	ATPase activity
DYQ05_RS01785	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
DYQ05_RS01785	COG1918	ferrous iron import across plasma membrane
DYQ05_RS01850	COG0737	Belongs to the 5'-nucleotidase family
DYQ05_RS01865	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DYQ05_RS01875	COG0632	four-way junction helicase activity
DYQ05_RS01880	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DYQ05_RS01895	COG0519	Catalyzes the synthesis of GMP from XMP
DYQ05_RS01915	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
DYQ05_RS01920	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ05_RS01935	COG1136	(ABC) transporter
DYQ05_RS01935	COG0577	efflux transmembrane transporter activity
DYQ05_RS01940	COG1136	(ABC) transporter
DYQ05_RS01940	COG0577	efflux transmembrane transporter activity
DYQ05_RS01945	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
DYQ05_RS01950	COG2217	Heavy metal translocating P-type atpase
DYQ05_RS01955	COG0525	valine-tRNA ligase activity
DYQ05_RS01960	COG1132	(ABC) transporter
DYQ05_RS01975	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DYQ05_RS01985	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DYQ05_RS01995	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DYQ05_RS02000	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DYQ05_RS02025	COG1924	4 iron, 4 sulfur cluster binding
DYQ05_RS02070	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DYQ05_RS02080	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DYQ05_RS02085	COG0250	Participates in transcription elongation, termination and antitermination
DYQ05_RS02090	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DYQ05_RS02095	COG0081	regulation of translation
DYQ05_RS02100	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DYQ05_RS02105	COG0222	ribosome binding
DYQ05_RS02110	COG0085	RNA polymerase activity
DYQ05_RS02115	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DYQ05_RS02145	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DYQ05_RS02165	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DYQ05_RS02170	COG4585	Histidine kinase
DYQ05_RS02185	COG2759	Belongs to the formate--tetrahydrofolate ligase family
DYQ05_RS02195	COG1363	Peptidase, m42
DYQ05_RS02215	COG1022	Amp-dependent synthetase and ligase
DYQ05_RS02225	COG1309	transcriptional regulator
DYQ05_RS02230	COG0786	glutamate:sodium symporter activity
DYQ05_RS02235	COG1132	(ABC) transporter
DYQ05_RS02250	COG1129	ABC transporter
DYQ05_RS02270	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
DYQ05_RS02275	COG1394	ATPase activity, coupled to movement of substances
DYQ05_RS02290	COG1692	metallophosphoesterase
DYQ05_RS02300	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYQ05_RS02305	COG1104	cysteine desulfurase activity
DYQ05_RS02310	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DYQ05_RS02315	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DYQ05_RS02320	COG4536	flavin adenine dinucleotide binding
DYQ05_RS02340	COG4608	Belongs to the ABC transporter superfamily
DYQ05_RS02345	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS02350	COG4166	transmembrane transport
DYQ05_RS02355	COG0747	negative chemotaxis
DYQ05_RS02360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS02365	COG4174	ABC transporter (Permease)
DYQ05_RS02395	COG2199	diguanylate cyclase activity
DYQ05_RS02395	COG2203	Gaf domain
DYQ05_RS02420	COG0800	Aldolase
DYQ05_RS02440	COG0840	transmembrane signaling receptor activity
DYQ05_RS02485	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYQ05_RS02495	COG0328	RNA-DNA hybrid ribonuclease activity
DYQ05_RS02500	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DYQ05_RS02505	COG0301	tRNA thio-modification
DYQ05_RS02515	COG1131	(ABC) transporter
DYQ05_RS02530	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DYQ05_RS02540	COG0326	Molecular chaperone. Has ATPase activity
DYQ05_RS02560	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ05_RS02565	COG1509	lysine 2,3-aminomutase activity
DYQ05_RS02580	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DYQ05_RS02615	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ05_RS02630	COG0084	hydrolase, TatD family'
DYQ05_RS02635	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYQ05_RS02635	COG3116	cell division
DYQ05_RS02650	COG0716	FMN binding
DYQ05_RS02670	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DYQ05_RS02675	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DYQ05_RS02680	COG1419	protein localization to endoplasmic reticulum
DYQ05_RS02695	COG1191	sigma factor activity
DYQ05_RS02725	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYQ05_RS02730	COG0628	permease
DYQ05_RS02735	COG0363	glucosamine-6-phosphate deaminase activity
DYQ05_RS02750	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DYQ05_RS02760	COG0584	glycerophosphoryl diester phosphodiesterase
DYQ05_RS02765	COG1040	competence protein
DYQ05_RS02770	COG0018	arginyl-trna synthetase
DYQ05_RS02775	COG0714	Associated with various cellular activities
DYQ05_RS02840	COG0534	Mate efflux family protein
DYQ05_RS02845	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DYQ05_RS02850	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DYQ05_RS02860	COG1338	Plays a role in the flagellum-specific transport system
DYQ05_RS02870	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DYQ05_RS02870	COG1776	CheC inhibitor of MCP methylation
DYQ05_RS02875	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DYQ05_RS02880	COG1580	Controls the rotational direction of flagella during chemotaxis
DYQ05_RS02885	COG1360	Flagellar Motor Protein
DYQ05_RS02890	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DYQ05_RS02905	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DYQ05_RS02945	COG3152	Membrane
DYQ05_RS02955	COG2887	Belongs to the helicase family. UvrD subfamily
DYQ05_RS02975	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DYQ05_RS03000	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DYQ05_RS03010	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DYQ05_RS03010	COG1747	RNA polymerase binding
DYQ05_RS03030	COG0116	Belongs to the methyltransferase superfamily
DYQ05_RS03115	COG1121	(ABC) transporter
DYQ05_RS03130	COG3541	Predicted nucleotidyltransferase
DYQ05_RS03165	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DYQ05_RS03170	COG0166	Belongs to the GPI family
DYQ05_RS03175	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DYQ05_RS03185	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ05_RS03220	COG1473	amidohydrolase
DYQ05_RS03240	COG4555	ABC transporter
DYQ05_RS03270	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
DYQ05_RS03295	COG1132	(ABC) transporter
DYQ05_RS03310	COG1129	ABC transporter
DYQ05_RS03320	COG2207	Transcriptional regulator
DYQ05_RS03345	COG2357	RelA SpoT domain protein
DYQ05_RS03350	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DYQ05_RS03370	COG1755	Isoprenylcysteine carboxyl methyltransferase
DYQ05_RS03385	COG2239	Acts as a magnesium transporter
DYQ05_RS03410	COG0556	nucleotide-excision repair
DYQ05_RS03435	COG4946	Tricorn protease homolog
DYQ05_RS03435	COG0823	Involved in the tonB-independent uptake of proteins
DYQ05_RS03435	COG1506	peptidase
DYQ05_RS03445	COG1228	amidohydrolase
DYQ05_RS03455	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DYQ05_RS03470	COG0423	glycine-tRNA ligase activity
DYQ05_RS03510	COG1876	peptidase activity
DYQ05_RS03515	COG1366	Belongs to the anti-sigma-factor antagonist family
DYQ05_RS03540	COG1393	Belongs to the ArsC family
DYQ05_RS03545	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DYQ05_RS03555	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DYQ05_RS03560	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYQ05_RS03565	COG1115	amino acid carrier protein
DYQ05_RS03570	COG1254	Belongs to the acylphosphatase family
DYQ05_RS03595	COG1301	dicarboxylic acid transport
DYQ05_RS03600	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DYQ05_RS03605	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DYQ05_RS03610	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ05_RS03615	COG1690	Belongs to the RtcB family
DYQ05_RS03620	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DYQ05_RS03625	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ05_RS03625	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ05_RS03630	COG0095	Lipoate-protein ligase
DYQ05_RS03635	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DYQ05_RS03640	COG1305	Transglutaminase-like
DYQ05_RS03655	COG0215	cysteine-tRNA ligase activity
DYQ05_RS03665	COG0330	HflC and HflK could
DYQ05_RS03670	COG2116	formate transmembrane transporter activity
DYQ05_RS03675	COG0592	DNA-directed DNA polymerase activity
DYQ05_RS03680	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DYQ05_RS03710	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DYQ05_RS03720	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DYQ05_RS03735	COG1131	(ABC) transporter
DYQ05_RS03745	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DYQ05_RS03750	COG0739	heme binding
DYQ05_RS03760	COG1728	Protein conserved in bacteria
DYQ05_RS03765	COG1774	PSP1 C-terminal conserved region
DYQ05_RS03780	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
DYQ05_RS03790	COG0840	transmembrane signaling receptor activity
DYQ05_RS03795	COG0674	pyruvate-flavodoxin oxidoreductase activity
DYQ05_RS03795	COG1013	pyruvate-flavodoxin oxidoreductase activity
DYQ05_RS03795	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DYQ05_RS03795	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DYQ05_RS03800	COG1132	(ABC) transporter
DYQ05_RS03815	COG0540	Belongs to the ATCase OTCase family
DYQ05_RS03815	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
DYQ05_RS03820	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DYQ05_RS03825	COG1674	ftsk spoiiie
DYQ05_RS03830	COG1968	undecaprenyl-diphosphatase activity
DYQ05_RS03840	COG1492	cobalamin metabolic process
DYQ05_RS03845	COG0445	tRNA wobble uridine modification
DYQ05_RS03850	COG1362	aminopeptidase activity
DYQ05_RS03860	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
DYQ05_RS03870	COG1505	serine-type exopeptidase activity
DYQ05_RS03880	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DYQ05_RS03885	COG0351	phosphomethylpyrimidine kinase
DYQ05_RS03890	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
DYQ05_RS03905	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ05_RS03920	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DYQ05_RS03930	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DYQ05_RS03935	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DYQ05_RS03950	COG4608	Belongs to the ABC transporter superfamily
DYQ05_RS03955	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS03960	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS03965	COG0601	transmembrane transport
DYQ05_RS03970	COG3588	fructose-bisphosphate aldolase
DYQ05_RS03985	COG4115	mRNA cleavage
DYQ05_RS03995	COG4115	mRNA cleavage
DYQ05_RS04005	COG3735	TraB family
DYQ05_RS04020	COG1983	PspC domain protein
DYQ05_RS04025	COG1516	flagellar protein fliS
DYQ05_RS04040	COG0840	transmembrane signaling receptor activity
DYQ05_RS04065	COG1132	(ABC) transporter
DYQ05_RS04075	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DYQ05_RS04085	COG1120	ATPase activity
DYQ05_RS04090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS04095	COG2226	methyltransferase
DYQ05_RS04195	COG0167	dihydroorotate dehydrogenase activity
DYQ05_RS04210	COG0701	Predicted permease
DYQ05_RS04220	COG0587	DNA-directed DNA polymerase activity
DYQ05_RS04225	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ05_RS04240	COG4555	ABC transporter
DYQ05_RS04265	COG0730	response to heat
DYQ05_RS04275	COG1959	2 iron, 2 sulfur cluster binding
DYQ05_RS04280	COG2910	NAD(P)H-binding
DYQ05_RS04285	COG2089	acid synthase
DYQ05_RS04300	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DYQ05_RS04325	COG1120	ATPase activity
DYQ05_RS04365	COG1696	Membrane protein involved in D-alanine export
DYQ05_RS04375	COG0783	Belongs to the Dps family
DYQ05_RS04380	COG0840	transmembrane signaling receptor activity
DYQ05_RS04400	COG0425	Belongs to the sulfur carrier protein TusA family
DYQ05_RS04425	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ05_RS04440	COG1136	(ABC) transporter
DYQ05_RS04445	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
DYQ05_RS04460	COG0629	single-stranded DNA binding
DYQ05_RS04495	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS04500	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS04505	COG4172	Belongs to the ABC transporter superfamily
DYQ05_RS04510	COG1132	(ABC) transporter
DYQ05_RS04545	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DYQ05_RS04550	COG0196	riboflavin kinase activity
DYQ05_RS04555	COG0840	transmembrane signaling receptor activity
DYQ05_RS04580	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DYQ05_RS04595	COG2233	PERMEase
DYQ05_RS04610	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DYQ05_RS04635	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ05_RS04665	COG0546	phosphoglycolate phosphatase activity
DYQ05_RS04670	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DYQ05_RS04675	COG4166	transmembrane transport
DYQ05_RS04845	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DYQ05_RS04855	COG1606	tRNA processing
DYQ05_RS04860	COG1132	(ABC) transporter
DYQ05_RS04865	COG1132	(ABC) transporter
DYQ05_RS04870	COG1132	(ABC) transporter
DYQ05_RS04890	COG1475	DNA binding
DYQ05_RS04895	COG1192	Involved in chromosome partitioning
DYQ05_RS04900	COG0840	transmembrane signaling receptor activity
DYQ05_RS04910	COG1802	Transcriptional regulator
DYQ05_RS04935	COG0511	ligase activity, forming carbon-carbon bonds
DYQ05_RS04940	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
DYQ05_RS04950	COG2301	Belongs to the HpcH HpaI aldolase family
DYQ05_RS04955	COG3051	citrate lyase alpha subunit
DYQ05_RS04970	COG0616	signal peptide processing
DYQ05_RS04975	COG0012	GTP binding
DYQ05_RS04985	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DYQ05_RS04990	COG1744	ABC transporter substrate-binding protein PnrA-like
DYQ05_RS04995	COG3845	ABC transporter
DYQ05_RS05000	COG4603	Belongs to the binding-protein-dependent transport system permease family
DYQ05_RS05005	COG1079	Belongs to the binding-protein-dependent transport system permease family
DYQ05_RS05015	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DYQ05_RS05025	COG1132	(ABC) transporter
DYQ05_RS05050	COG0280	phosphate acetyltransferase
DYQ05_RS05055	COG0457	Tetratricopeptide repeat
DYQ05_RS05065	COG0542	response to heat
DYQ05_RS05070	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DYQ05_RS05080	COG0101	tRNA pseudouridine synthase activity
DYQ05_RS05090	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
DYQ05_RS05100	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DYQ05_RS05110	COG0840	transmembrane signaling receptor activity
DYQ05_RS05115	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DYQ05_RS05125	COG0544	peptidyl-prolyl cis-trans isomerase activity
DYQ05_RS05140	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DYQ05_RS05145	COG2211	Major facilitator Superfamily
DYQ05_RS05155	COG2201	protein-glutamate methylesterase activity
DYQ05_RS05165	COG0835	chemotaxis
DYQ05_RS05170	COG0643	Histidine kinase
DYQ05_RS05170	COG2198	Histidine kinase
DYQ05_RS05185	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DYQ05_RS05200	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DYQ05_RS05200	COG0316	Belongs to the HesB IscA family
DYQ05_RS05205	COG0756	dUTP diphosphatase activity
DYQ05_RS05210	COG3330	Domain of unknown function (DUF4912)
DYQ05_RS05225	COG0543	2 iron, 2 sulfur cluster binding
DYQ05_RS05245	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DYQ05_RS05255	COG2080	2 iron, 2 sulfur cluster binding
DYQ05_RS05270	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DYQ05_RS05275	COG1987	bacterial-type flagellum assembly
DYQ05_RS05280	COG1684	flagellar biosynthetic protein fliR
DYQ05_RS05285	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DYQ05_RS05305	COG2217	Heavy metal translocating P-type atpase
DYQ05_RS05315	COG3829	transcription factor binding
DYQ05_RS05335	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DYQ05_RS05350	COG4545	Glutaredoxin-related protein
DYQ05_RS05360	COG0739	heme binding
DYQ05_RS05365	COG1418	mRNA catabolic process
DYQ05_RS05400	COG4139	cobalamin transport
DYQ05_RS05405	COG1120	ATPase activity
DYQ05_RS05425	COG1132	(ABC) transporter
DYQ05_RS05465	COG1120	ATPase activity
DYQ05_RS05480	COG0840	transmembrane signaling receptor activity
DYQ05_RS05515	COG0840	transmembrane signaling receptor activity
DYQ05_RS05520	COG4656	Part of a membrane complex involved in electron transport
DYQ05_RS05525	COG4658	electron transport chain
DYQ05_RS05530	COG4659	FMN binding
DYQ05_RS05535	COG4660	Part of a membrane complex involved in electron transport
DYQ05_RS05560	COG0792	nuclease activity
DYQ05_RS05570	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DYQ05_RS05580	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DYQ05_RS05590	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DYQ05_RS05595	COG0357	Ribosomal RNA small subunit methyltransferase G
DYQ05_RS05600	COG1012	belongs to the aldehyde dehydrogenase family
DYQ05_RS05605	COG1757	Na H antiporter
DYQ05_RS05610	COG4865	methylaspartate mutase activity
DYQ05_RS05615	COG1104	cysteine desulfurase activity
DYQ05_RS05630	COG0724	RNA recognition motif
DYQ05_RS05640	COG0534	Mate efflux family protein
DYQ05_RS05645	COG0420	3'-5' exonuclease activity
DYQ05_RS05650	COG0419	ATPase involved in DNA repair
DYQ05_RS05675	COG1187	pseudouridine synthase activity
DYQ05_RS05715	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DYQ05_RS05720	COG0154	amidase activity
DYQ05_RS05740	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ05_RS05755	COG0426	domain, Protein
DYQ05_RS05755	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYQ05_RS05775	COG3118	belongs to the thioredoxin family
DYQ05_RS05800	COG1047	Peptidyl-prolyl cis-trans
DYQ05_RS05835	COG0644	oxidoreductase
DYQ05_RS05840	COG2226	methyltransferase
DYQ05_RS05850	COG0142	geranyltranstransferase activity
DYQ05_RS05870	COG0003	Pfam Anion-transporting ATPase
DYQ05_RS05875	COG0003	Pfam Anion-transporting ATPase
DYQ05_RS05880	COG1620	l-lactate permease
DYQ05_RS05890	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DYQ05_RS06010	COG2361	Protein of unknown function DUF86
DYQ05_RS06025	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
DYQ05_RS06080	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DYQ05_RS06100	COG3177	Filamentation induced by cAMP protein fic
DYQ05_RS06180	COG0813	purine-nucleoside phosphorylase activity
DYQ05_RS06375	COG1132	(ABC) transporter
DYQ05_RS06380	COG0535	radical SAM domain protein
DYQ05_RS06410	COG0656	L-ascorbic acid biosynthetic process
DYQ05_RS06435	COG0840	transmembrane signaling receptor activity
DYQ05_RS06460	COG2207	Transcriptional regulator
DYQ05_RS06470	COG1132	(ABC) transporter
DYQ05_RS06500	COG2855	membrane
DYQ05_RS06510	COG1129	ABC transporter
DYQ05_RS06525	COG0126	phosphoglycerate kinase activity
DYQ05_RS06540	COG1079	Belongs to the binding-protein-dependent transport system permease family
DYQ05_RS06545	COG4603	Belongs to the binding-protein-dependent transport system permease family
DYQ05_RS06550	COG3845	ABC transporter
DYQ05_RS06555	COG1744	ABC transporter substrate-binding protein PnrA-like
DYQ05_RS06560	COG2342	PFAM TM1410 hypothetical-related protein
DYQ05_RS06595	COG0268	Binds directly to 16S ribosomal RNA
DYQ05_RS06605	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DYQ05_RS06615	COG1546	Belongs to the CinA family
DYQ05_RS06615	COG1058	Belongs to the CinA family
DYQ05_RS06625	COG3681	Belongs to the UPF0597 family
DYQ05_RS06635	COG0617	tRNA 3'-terminal CCA addition
DYQ05_RS06655	COG1132	(ABC) transporter
DYQ05_RS06660	COG1132	(ABC) transporter
DYQ05_RS06690	COG0343	queuine tRNA-ribosyltransferase activity
DYQ05_RS06710	COG0359	binds to the 23S rRNA
DYQ05_RS06715	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DYQ05_RS06720	COG0629	single-stranded DNA binding
DYQ05_RS06725	COG0360	Binds together with S18 to 16S ribosomal RNA
DYQ05_RS06750	COG4104	PAAR repeat-containing protein
DYQ05_RS06750	COG3209	COG3209 Rhs family protein
DYQ05_RS06760	COG3209	COG3209 Rhs family protein
DYQ05_RS06760	COG4104	PAAR repeat-containing protein
DYQ05_RS06765	COG2252	PERMEase
DYQ05_RS06780	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
DYQ05_RS06790	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DYQ05_RS06795	COG0071	Belongs to the small heat shock protein (HSP20) family
DYQ05_RS06800	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYQ05_RS06825	COG1132	(ABC) transporter
DYQ05_RS06830	COG1132	(ABC) transporter
DYQ05_RS06835	COG1120	ATPase activity
DYQ05_RS06840	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS06845	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DYQ05_RS06855	COG2201	protein-glutamate methylesterase activity
DYQ05_RS06875	COG1137	ATPase activity
DYQ05_RS06880	COG1053	succinate dehydrogenase
DYQ05_RS06880	COG0431	NADPH-dependent FMN reductase
DYQ05_RS06880	COG3976	FMN-binding domain protein
DYQ05_RS06895	COG2195	Cleaves the N-terminal amino acid of tripeptides
DYQ05_RS06900	COG0124	histidyl-tRNA synthetase
DYQ05_RS06910	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
DYQ05_RS06930	COG3706	GGDEF domain
DYQ05_RS06995	COG3033	Beta-eliminating lyase
DYQ05_RS07000	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DYQ05_RS07010	COG3639	organic phosphonate transmembrane transporter activity
DYQ05_RS07015	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
DYQ05_RS07040	COG0019	diaminopimelate decarboxylase activity
DYQ05_RS07060	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS07065	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS07070	COG0601	transmembrane transport
DYQ05_RS07075	COG0747	negative chemotaxis
DYQ05_RS07080	COG0840	transmembrane signaling receptor activity
DYQ05_RS07100	COG4106	trans-aconitate 2-methyltransferase activity
DYQ05_RS07105	COG1269	ATP hydrolysis coupled proton transport
DYQ05_RS07120	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYQ05_RS07120	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ05_RS07120	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYQ05_RS07125	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DYQ05_RS07135	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DYQ05_RS07140	COG2890	protein-(glutamine-N5) methyltransferase activity
DYQ05_RS07160	COG2088	sporulation resulting in formation of a cellular spore
DYQ05_RS07170	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DYQ05_RS07175	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DYQ05_RS07185	COG1592	Rubrerythrin
DYQ05_RS07190	COG1283	sodium-dependent phosphate transmembrane transporter activity
DYQ05_RS07210	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DYQ05_RS07215	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DYQ05_RS07265	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DYQ05_RS07275	COG0719	Fe-S assembly protein
DYQ05_RS07285	COG0583	DNA-binding transcription factor activity
DYQ05_RS07290	COG1131	(ABC) transporter
DYQ05_RS07300	COG0495	leucyl-tRNA aminoacylation
DYQ05_RS07330	COG1196	nuclear chromosome segregation
DYQ05_RS07340	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ05_RS07695	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DYQ05_RS07710	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS07730	COG1181	Belongs to the D-alanine--D-alanine ligase family
DYQ05_RS07735	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DYQ05_RS07735	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DYQ05_RS07740	COG1102	Psort location Cytoplasmic, score
DYQ05_RS07745	COG1561	YicC-like family, N-terminal region
DYQ05_RS07755	COG0285	dihydrofolate synthase activity
DYQ05_RS07760	COG0564	pseudouridine synthase activity
DYQ05_RS07775	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DYQ05_RS07790	COG0803	Belongs to the bacterial solute-binding protein 9 family
DYQ05_RS07795	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DYQ05_RS07800	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DYQ05_RS07805	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DYQ05_RS07805	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DYQ05_RS07810	COG1196	nuclear chromosome segregation
DYQ05_RS07810	COG0741	lytic transglycosylase activity
DYQ05_RS07810	COG0739	heme binding
DYQ05_RS07820	COG1595	DNA-templated transcription, initiation
DYQ05_RS07835	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DYQ05_RS07840	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DYQ05_RS07845	COG1966	Carbon starvation protein
DYQ05_RS07850	COG3956	TIGRFAM MazG family protein
DYQ05_RS07865	COG0793	Belongs to the peptidase S41A family
DYQ05_RS07870	COG0534	Mate efflux family protein
DYQ05_RS07880	COG0549	Belongs to the carbamate kinase family
DYQ05_RS07890	COG0823	Involved in the tonB-independent uptake of proteins
DYQ05_RS07900	COG1199	ATP-dependent helicase activity
DYQ05_RS08115	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DYQ05_RS08135	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DYQ05_RS08170	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DYQ05_RS08175	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DYQ05_RS08195	COG0237	dephospho-CoA kinase activity
DYQ05_RS08200	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYQ05_RS08200	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ05_RS08200	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ05_RS08215	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
DYQ05_RS08255	COG0398	Pfam SNARE associated Golgi protein
DYQ05_RS08265	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DYQ05_RS08275	COG0668	transmembrane transport
DYQ05_RS08305	COG2897	thiosulfate sulfurtransferase activity
DYQ05_RS08355	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DYQ05_RS08360	COG0358	DNA primase activity
DYQ05_RS08365	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ05_RS08385	COG1077	Cell shape determining protein MreB Mrl
DYQ05_RS08400	COG0768	penicillin binding
DYQ05_RS08405	COG0772	Belongs to the SEDS family
DYQ05_RS08425	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
DYQ05_RS08430	COG0840	transmembrane signaling receptor activity
DYQ05_RS08440	COG1269	ATP hydrolysis coupled proton transport
DYQ05_RS08445	COG1394	ATPase activity, coupled to movement of substances
DYQ05_RS08450	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
DYQ05_RS08455	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
DYQ05_RS08460	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DYQ05_RS08485	COG1794	racemase activity, acting on amino acids and derivatives
DYQ05_RS08515	COG0217	transcriptional regulatory protein
DYQ05_RS08520	COG0138	bifunctional purine biosynthesis protein purh
DYQ05_RS08530	COG1362	aminopeptidase activity
DYQ05_RS08550	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DYQ05_RS08560	COG1115	amino acid carrier protein
DYQ05_RS08575	COG0799	negative regulation of ribosome biogenesis
DYQ05_RS08580	COG2059	Chromate
DYQ05_RS08600	COG1480	7TM receptor with intracellular HD hydrolase
DYQ05_RS08605	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DYQ05_RS08615	COG2885	chlorophyll binding
DYQ05_RS08620	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DYQ05_RS08630	COG1266	CAAX protease self-immunity
DYQ05_RS08655	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DYQ05_RS08670	COG0509	glycine decarboxylation via glycine cleavage system
DYQ05_RS08680	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DYQ05_RS08685	COG1722	exodeoxyribonuclease VII activity
DYQ05_RS08690	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DYQ05_RS08735	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DYQ05_RS08745	COG1773	rubredoxin
DYQ05_RS08765	COG1692	metallophosphoesterase
DYQ05_RS08775	COG0142	geranyltranstransferase activity
DYQ05_RS08785	COG4555	ABC transporter
DYQ05_RS08825	COG1115	amino acid carrier protein
DYQ05_RS08835	COG2195	Cleaves the N-terminal amino acid of tripeptides
DYQ05_RS08845	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DYQ05_RS08850	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DYQ05_RS08870	COG0156	8-amino-7-oxononanoate synthase activity
DYQ05_RS08890	COG1363	Peptidase, m42
DYQ05_RS08895	COG0281	malic enzyme
DYQ05_RS08910	COG2738	Putative neutral zinc metallopeptidase
DYQ05_RS08915	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
DYQ05_RS08915	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DYQ05_RS08930	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DYQ05_RS08935	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DYQ05_RS08950	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DYQ05_RS08955	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DYQ05_RS08985	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DYQ05_RS08990	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DYQ05_RS08990	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DYQ05_RS08995	COG1329	Transcriptional regulator
DYQ05_RS09010	COG0577	efflux transmembrane transporter activity
DYQ05_RS09010	COG1136	(ABC) transporter
DYQ05_RS09025	COG0577	efflux transmembrane transporter activity
DYQ05_RS09025	COG1136	(ABC) transporter
DYQ05_RS09035	COG0009	L-threonylcarbamoyladenylate synthase
DYQ05_RS09085	COG2204	response regulator
DYQ05_RS09090	COG0539	negative regulation of cytoplasmic translation
DYQ05_RS09115	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DYQ05_RS09155	COG1388	LysM domain
DYQ05_RS09160	COG1757	Na H antiporter
DYQ05_RS09165	COG0626	cystathionine gamma-synthase activity
DYQ05_RS09185	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DYQ05_RS09195	COG0488	(ABC) transporter
DYQ05_RS09200	COG2723	6-phospho-beta-galactosidase activity
DYQ05_RS09220	COG0557	exoribonuclease II activity
DYQ05_RS09245	COG2017	converts alpha-aldose to the beta-anomer
DYQ05_RS09255	COG1162	GTPase activity
DYQ05_RS09270	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DYQ05_RS09275	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ05_RS09285	COG2255	four-way junction helicase activity
DYQ05_RS09295	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DYQ05_RS09310	COG3880	PFAM UvrB UvrC protein
DYQ05_RS09320	COG1136	(ABC) transporter
DYQ05_RS09335	COG0552	protein localization to endoplasmic reticulum
DYQ05_RS09350	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DYQ05_RS09365	COG0840	transmembrane signaling receptor activity
DYQ05_RS09370	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ05_RS09385	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DYQ05_RS09390	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DYQ05_RS09400	COG2056	Na+-H+ antiporter family
DYQ05_RS09415	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DYQ05_RS09420	COG1309	transcriptional regulator
DYQ05_RS09430	COG1129	ABC transporter
DYQ05_RS09445	COG0488	(ABC) transporter
DYQ05_RS09475	COG4608	Belongs to the ABC transporter superfamily
DYQ05_RS09490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS09495	COG0601	transmembrane transport
DYQ05_RS09505	COG0312	modulator of DNA gyrase
DYQ05_RS09530	COG2604	Protein of unknown function DUF115
DYQ05_RS09535	COG0484	heat shock protein binding
DYQ05_RS09540	COG0443	Heat shock 70 kDa protein
DYQ05_RS09545	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DYQ05_RS09550	COG0284	orotidine-5'-phosphate decarboxylase activity
DYQ05_RS09560	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DYQ05_RS09575	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DYQ05_RS09585	COG0825	malonyl-CoA metabolic process
DYQ05_RS09590	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DYQ05_RS09595	COG0439	Biotin carboxylase
DYQ05_RS09600	COG0511	ligase activity, forming carbon-carbon bonds
DYQ05_RS09605	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DYQ05_RS09610	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DYQ05_RS09615	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ05_RS09620	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DYQ05_RS09625	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DYQ05_RS09635	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DYQ05_RS09660	COG0330	HflC and HflK could
DYQ05_RS09665	COG0330	HflC and HflK could
DYQ05_RS09695	COG0835	chemotaxis
DYQ05_RS09705	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DYQ05_RS09710	COG1132	(ABC) transporter
DYQ05_RS09720	COG2084	Dehydrogenase
DYQ05_RS09725	COG2986	histidine ammonia-lyase
DYQ05_RS09735	COG1131	(ABC) transporter
DYQ05_RS09750	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DYQ05_RS09895	COG0442	prolyl-tRNA aminoacylation
DYQ05_RS09900	COG4608	Belongs to the ABC transporter superfamily
DYQ05_RS09905	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS09910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS09915	COG0601	transmembrane transport
DYQ05_RS09920	COG4166	transmembrane transport
DYQ05_RS09940	COG3216	Uncharacterized protein conserved in bacteria (DUF2062)
DYQ05_RS09945	COG0297	glycogen (starch) synthase activity
DYQ05_RS09955	COG4475	Protein of unknown function (DUF436)
DYQ05_RS09970	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ05_RS09985	COG1157	protein secretion by the type III secretion system
DYQ05_RS09990	COG1317	bacterial-type flagellum organization
DYQ05_RS10000	COG1766	The M ring may be actively involved in energy transduction
DYQ05_RS10005	COG1677	Flagellar hook-basal body complex protein FliE
DYQ05_RS10020	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DYQ05_RS10025	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DYQ05_RS10030	COG4974	Belongs to the 'phage' integrase family
DYQ05_RS10035	COG0551	DNA topoisomerase type I activity
DYQ05_RS10035	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DYQ05_RS10040	COG0758	DNA mediated transformation
DYQ05_RS10040	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DYQ05_RS10055	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DYQ05_RS10070	COG0772	Belongs to the SEDS family
DYQ05_RS10075	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DYQ05_RS10090	COG2001	Belongs to the MraZ family
DYQ05_RS10115	COG0513	Belongs to the DEAD box helicase family
DYQ05_RS10125	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
DYQ05_RS10140	COG1739	Uncharacterized protein family UPF0029
DYQ05_RS10160	COG0747	negative chemotaxis
DYQ05_RS10165	COG0601	transmembrane transport
DYQ05_RS10170	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS10185	COG2226	methyltransferase
DYQ05_RS10190	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DYQ05_RS10200	COG0481	GTPase activity
DYQ05_RS10220	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DYQ05_RS10230	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DYQ05_RS10235	COG0233	cytoplasmic translational termination
DYQ05_RS10240	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DYQ05_RS10245	COG0052	Belongs to the universal ribosomal protein uS2 family
DYQ05_RS10280	COG4104	PAAR repeat-containing protein
DYQ05_RS10280	COG3209	COG3209 Rhs family protein
DYQ05_RS10320	COG3209	COG3209 Rhs family protein
DYQ05_RS10330	COG3209	COG3209 Rhs family protein
DYQ05_RS10340	COG4104	PAAR repeat-containing protein
DYQ05_RS10340	COG3209	COG3209 Rhs family protein
DYQ05_RS10355	COG4104	PAAR repeat-containing protein
DYQ05_RS10355	COG3209	COG3209 Rhs family protein
DYQ05_RS10395	COG0312	modulator of DNA gyrase
DYQ05_RS10400	COG3052	prosthetic group binding
DYQ05_RS10410	COG3051	citrate lyase alpha subunit
DYQ05_RS10425	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DYQ05_RS10430	COG0484	heat shock protein binding
DYQ05_RS10435	COG0528	UMP kinase activity
DYQ05_RS10440	COG0736	holo-[acyl-carrier-protein] synthase activity
DYQ05_RS10450	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
DYQ05_RS10455	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DYQ05_RS10460	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ05_RS10465	COG0424	maF-like protein
DYQ05_RS10470	COG1413	lyase activity
DYQ05_RS10480	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ05_RS10485	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ05_RS10490	COG1334	flagellar protein FlaG
DYQ05_RS10495	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DYQ05_RS10495	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
DYQ05_RS10510	COG0802	atpase or kinase
DYQ05_RS10520	COG3437	response regulator, receiver
DYQ05_RS10525	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYQ05_RS10530	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYQ05_RS10535	COG2204	response regulator
DYQ05_RS10595	COG0731	radical SAM domain protein
DYQ05_RS10620	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
DYQ05_RS10625	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DYQ05_RS10645	COG1053	succinate dehydrogenase
DYQ05_RS10680	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
DYQ05_RS10685	COG3118	belongs to the thioredoxin family
DYQ05_RS10690	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DYQ05_RS10725	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DYQ05_RS10740	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DYQ05_RS10745	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DYQ05_RS10750	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DYQ05_RS10780	COG0193	aminoacyl-tRNA hydrolase activity
DYQ05_RS10810	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DYQ05_RS10835	COG0653	protein targeting
DYQ05_RS10850	COG3706	GGDEF domain
DYQ05_RS10875	COG1639	'signal transduction protein
DYQ05_RS10885	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ05_RS10890	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DYQ05_RS10895	COG1477	protein flavinylation
DYQ05_RS10900	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DYQ05_RS10945	COG0493	'glutamate synthase
DYQ05_RS10945	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DYQ05_RS10955	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ05_RS10960	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DYQ05_RS10975	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
DYQ05_RS10995	COG0459	protein refolding
DYQ05_RS11010	COG5341	Protein conserved in bacteria
DYQ05_RS11015	COG0577	efflux transmembrane transporter activity
DYQ05_RS11015	COG1136	(ABC) transporter
DYQ05_RS11020	COG0826	peptidase U32
DYQ05_RS11030	COG1132	(ABC) transporter
DYQ05_RS11060	COG1122	ATPase activity
DYQ05_RS11075	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DYQ05_RS11080	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DYQ05_RS11130	COG1131	(ABC) transporter
DYQ05_RS11135	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DYQ05_RS11140	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DYQ05_RS11145	COG1862	Preprotein translocase
DYQ05_RS11150	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DYQ05_RS11155	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYQ05_RS11160	COG0571	ribonuclease III activity
DYQ05_RS11165	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DYQ05_RS11170	COG1573	uracil-dna glycosylase
DYQ05_RS11180	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DYQ05_RS11185	COG0563	adenylate kinase activity
DYQ05_RS11205	COG0739	heme binding
DYQ05_RS11240	COG0556	nucleotide-excision repair
DYQ05_RS11245	COG0254	rRNA binding
DYQ05_RS11285	COG2217	Heavy metal translocating P-type atpase
DYQ05_RS11290	COG0640	Transcriptional regulator
DYQ05_RS11310	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
DYQ05_RS11315	COG0784	Response regulator, receiver
DYQ05_RS11315	COG3437	response regulator, receiver
DYQ05_RS11320	COG1921	L-seryl-tRNASec selenium transferase activity
DYQ05_RS11325	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DYQ05_RS11335	COG2003	Belongs to the UPF0758 family
DYQ05_RS11340	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ05_RS11355	COG1132	(ABC) transporter
DYQ05_RS11360	COG0457	Tetratricopeptide repeat
DYQ05_RS11390	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DYQ05_RS11430	COG0456	acetyltransferase
DYQ05_RS11590	COG0564	pseudouridine synthase activity
DYQ05_RS11605	COG4656	Part of a membrane complex involved in electron transport
DYQ05_RS11655	COG3833	ABC-type maltose transport systems, permease component
DYQ05_RS11660	COG3842	ATPase activity
DYQ05_RS11665	COG1640	4-alpha-glucanotransferase
DYQ05_RS11680	COG0779	Required for maturation of 30S ribosomal subunits
DYQ05_RS11690	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DYQ05_RS11695	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DYQ05_RS11700	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DYQ05_RS11720	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DYQ05_RS11725	COG0049	tRNA binding
DYQ05_RS11730	COG0791	NLP P60 protein
DYQ05_RS11735	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ05_RS11785	COG1609	Transcriptional regulator
DYQ05_RS11800	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DYQ05_RS11815	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DYQ05_RS11820	COG0300	oxidoreductase activity
DYQ05_RS11825	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DYQ05_RS11845	COG1704	LemA family
DYQ05_RS11850	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DYQ05_RS11855	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DYQ05_RS11920	COG4608	Belongs to the ABC transporter superfamily
DYQ05_RS11925	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS11930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS11935	COG0601	transmembrane transport
DYQ05_RS11945	COG1505	serine-type exopeptidase activity
DYQ05_RS11960	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DYQ05_RS11985	COG0617	tRNA 3'-terminal CCA addition
DYQ05_RS12010	COG1078	dGTPase activity
DYQ05_RS12020	COG0047	phosphoribosylformylglycinamidine synthase activity
DYQ05_RS12025	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DYQ05_RS12030	COG0569	domain protein
DYQ05_RS12055	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DYQ05_RS12060	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DYQ05_RS12065	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DYQ05_RS12075	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DYQ05_RS12080	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DYQ05_RS12090	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
DYQ05_RS12095	COG1671	Belongs to the UPF0178 family
DYQ05_RS12110	COG0444	Belongs to the ABC transporter superfamily
DYQ05_RS12115	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_RS12120	COG0601	transmembrane transport
DYQ05_RS12125	COG0747	negative chemotaxis
DYQ05_RS12135	COG0840	transmembrane signaling receptor activity
DYQ05_RS12170	COG0335	large ribosomal subunit rRNA binding
DYQ05_RS12175	COG0336	Belongs to the RNA methyltransferase TrmD family
DYQ05_RS12180	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DYQ05_RS12185	COG1837	Belongs to the UPF0109 family
DYQ05_RS12190	COG0228	four-way junction DNA binding
DYQ05_RS12195	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYQ05_RS12215	COG1309	transcriptional regulator
DYQ05_RS12225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYQ05_RS12230	COG1285	pathogenesis
DYQ05_RS12250	COG1131	(ABC) transporter
DYQ05_RS12255	COG4953	penicillin-binding protein 1C
DYQ05_RS12260	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DYQ05_RS12275	COG0084	hydrolase, TatD family'
DYQ05_RS12285	COG0709	Synthesizes selenophosphate from selenide and ATP
DYQ05_RS12300	COG1286	toxin biosynthetic process
DYQ05_RS12315	COG0450	alkyl hydroperoxide reductase
DYQ05_RS12320	COG0708	Exodeoxyribonuclease III
DYQ05_RS12325	COG0024	Methionine aminopeptidase
DYQ05_RS12330	COG0484	heat shock protein binding
DYQ05_RS12390	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DYQ05_RS12405	COG1162	GTPase activity
DYQ05_RS12420	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS12450	COG1132	(ABC) transporter
DYQ05_RS12460	COG0203	ribosomal protein L17
DYQ05_RS12465	COG0202	RNA polymerase activity
DYQ05_RS12470	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DYQ05_RS12475	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DYQ05_RS12480	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DYQ05_RS12490	COG0200	Binds to the 23S rRNA
DYQ05_RS12495	COG1841	ribosomal large subunit assembly
DYQ05_RS12500	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DYQ05_RS12505	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DYQ05_RS12510	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DYQ05_RS12515	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DYQ05_RS12520	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DYQ05_RS12525	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DYQ05_RS12530	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DYQ05_RS12535	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DYQ05_RS12540	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DYQ05_RS12545	COG0255	Belongs to the universal ribosomal protein uL29 family
DYQ05_RS12550	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DYQ05_RS12555	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DYQ05_RS12560	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DYQ05_RS12565	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DYQ05_RS12570	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DYQ05_RS12575	COG0089	rRNA binding
DYQ05_RS12580	COG0088	Forms part of the polypeptide exit tunnel
DYQ05_RS12585	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DYQ05_RS12590	COG0051	transcription antitermination factor activity, RNA binding
DYQ05_RS12600	COG0714	Associated with various cellular activities
DYQ05_RS12605	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
DYQ05_RS12635	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DYQ05_RS12650	COG0840	transmembrane signaling receptor activity
DYQ05_RS12665	COG0657	acetylesterase activity
DYQ05_RS12710	COG0488	(ABC) transporter
DYQ05_RS12725	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYQ05_RS12760	COG2207	Transcriptional regulator
DYQ05_RS12760	COG3708	Transcriptional regulator
DYQ05_RS12765	COG2378	regulation of single-species biofilm formation
DYQ05_RS12780	COG3708	Transcriptional regulator
DYQ05_RS12780	COG2207	Transcriptional regulator
DYQ05_RS12800	COG1053	succinate dehydrogenase
DYQ05_RS12800	COG3976	FMN-binding domain protein
DYQ05_RS12805	COG1120	ATPase activity
DYQ05_RS12810	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS12815	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS12820	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_RS12825	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DYQ05_RS12875	COG1067	ATP-dependent peptidase activity
DYQ05_RS12885	COG2199	diguanylate cyclase activity
DYQ05_RS12910	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DYQ05_RS12915	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DYQ05_RS12920	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DYQ05_RS12935	COG0149	triose-phosphate isomerase activity
DYQ05_RS12940	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DYQ05_RS12945	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DYQ05_RS12955	COG0534	Mate efflux family protein
DYQ05_RS12960	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DYQ05_RS12970	COG0588	phosphoglycerate mutase activity
DYQ05_RS12990	COG0305	Participates in initiation and elongation during chromosome replication
DYQ05_RS13005	COG1193	negative regulation of DNA recombination
DYQ05_RS13020	COG2304	oxidoreductase activity
DYQ05_RS13045	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DYQ05_RS13070	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DYQ05_RS13075	COG1121	(ABC) transporter
DYQ05_RS13080	COG0803	Belongs to the bacterial solute-binding protein 9 family
DYQ05_RS13100	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DYQ05_RS13105	COG3093	addiction module antidote protein HigA
DYQ05_RS13120	COG0205	6-phosphofructokinase activity
DYQ05_RS13140	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DYQ05_RS13150	COG1847	R3H domain protein
DYQ05_RS13155	COG0706	membrane insertase activity
DYQ05_RS13160	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DYQ05_RS13165	COG0594	ribonuclease P activity
DYQ05_RS13170	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DYQ05_RS13175	COG3314	Sporulation integral membrane protein YlbJ
DYQ05_RS13180	COG0813	purine-nucleoside phosphorylase activity
DYQ05_RS13210	COG3706	GGDEF domain
DYQ05_RS13235	COG1234	tRNA 3'-trailer cleavage
DYQ05_RS13250	COG3951	Flagellar rod assembly protein muramidase FlgJ
DYQ05_RS13255	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DYQ05_RS13300	COG3842	ATPase activity
DYQ05_RS13305	COG0514	ATP-dependent DNA helicase (RecQ)
DYQ05_RS13310	COG0187	DNA topoisomerase II activity