locus-tag class description JO40_RS00020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JO40_RS00020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JO40_RS00020 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JO40_RS00030 PF02233 NAD(P) transhydrogenase beta subunit JO40_RS00035 PF13603 Leucyl-tRNA synthetase, Domain 2 JO40_RS00035 PF09334 tRNA synthetases class I (M) JO40_RS00035 PF00133 tRNA synthetases class I (I, L, M and V) JO40_RS00035 PF08264 Anticodon-binding domain of tRNA JO40_RS00045 PF17820 PDZ domain JO40_RS00045 PF02163 Peptidase family M50 JO40_RS00050 PF13288 DXP reductoisomerase C-terminal domain JO40_RS00050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JO40_RS00050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JO40_RS00060 PF01255 Putative undecaprenyl diphosphate synthase JO40_RS00065 PF01765 Ribosome recycling factor JO40_RS00070 PF00889 Elongation factor TS JO40_RS00075 PF00318 Ribosomal protein S2 JO40_RS00080 PF02545 Maf-like protein JO40_RS00100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_RS00100 PF07196 Flagellin hook IN motif JO40_RS00105 PF00669 Bacterial flagellin N-terminal helical region JO40_RS00105 PF00700 Bacterial flagellin C-terminal helical region JO40_RS00105 PF07196 Flagellin hook IN motif JO40_RS00110 PF02623 FliW protein JO40_RS00115 PF02599 Global regulator protein family JO40_RS00125 PF10145 Phage-related minor tail protein JO40_RS00125 PF01464 Transglycosylase SLT domain JO40_RS00125 PF01551 Peptidase family M23 JO40_RS00150 PF00924 Mechanosensitive ion channel JO40_RS00165 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS00170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS00170 PF00672 HAMP domain JO40_RS00170 PF02743 Cache domain JO40_RS00190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_RS00195 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS00200 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS00200 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_RS00205 PF00005 ABC transporter JO40_RS00205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS00210 PF00005 ABC transporter JO40_RS00215 PF00266 Aminotransferase class-V JO40_RS00220 PF02769 AIR synthase related protein, C-terminal domain JO40_RS00220 PF00586 AIR synthase related protein, N-terminal domain JO40_RS00235 PF01206 Sulfurtransferase TusA JO40_RS00250 PF02772 S-adenosylmethionine synthetase, central domain JO40_RS00250 PF00438 S-adenosylmethionine synthetase, N-terminal domain JO40_RS00250 PF02773 S-adenosylmethionine synthetase, C-terminal domain JO40_RS00260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_RS00265 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS00270 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS00270 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_RS00275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS00275 PF00005 ABC transporter JO40_RS00280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS00280 PF00005 ABC transporter JO40_RS00300 PF09334 tRNA synthetases class I (M) JO40_RS00300 PF01588 Putative tRNA binding domain JO40_RS00310 PF00005 ABC transporter JO40_RS00320 PF01554 MatE JO40_RS00325 PF02743 Cache domain JO40_RS00325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS00325 PF00672 HAMP domain JO40_RS00330 PF03553 Na+/H+ antiporter family JO40_RS00340 PF00158 Sigma-54 interaction domain JO40_RS00340 PF00989 PAS fold JO40_RS00340 PF02954 Bacterial regulatory protein, Fis family JO40_RS00350 PF00301 Rubredoxin JO40_RS00365 PF14492 Elongation Factor G, domain II JO40_RS00365 PF03764 Elongation factor G, domain IV JO40_RS00365 PF00009 Elongation factor Tu GTP binding domain JO40_RS00365 PF00679 Elongation factor G C-terminus JO40_RS00365 PF03144 Elongation factor Tu domain 2 JO40_RS00370 PF00177 Ribosomal protein S7p/S5e JO40_RS00375 PF00164 Ribosomal protein S12/S23 JO40_RS00380 PF11756 Nitrous oxide-stimulated promoter JO40_RS00390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO40_RS00390 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JO40_RS00390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JO40_RS00390 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JO40_RS00390 PF10371 Domain of unknown function JO40_RS00395 PF01177 Asp/Glu/Hydantoin racemase JO40_RS00400 PF01053 Cys/Met metabolism PLP-dependent enzyme JO40_RS00410 PF03553 Na+/H+ antiporter family JO40_RS00430 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS00445 PF00005 ABC transporter JO40_RS00450 PF01891 Cobalt uptake substrate-specific transmembrane region JO40_RS00490 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS00490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JO40_RS00505 PF01784 NIF3 (NGG1p interacting factor 3) JO40_RS00515 PF10509 Galactokinase galactose-binding signature JO40_RS00515 PF08544 GHMP kinases C terminal JO40_RS00515 PF00288 GHMP kinases N terminal domain JO40_RS00525 PF00266 Aminotransferase class-V JO40_RS00555 PF01544 CorA-like Mg2+ transporter protein JO40_RS00560 PF13735 tRNA nucleotidyltransferase domain 2 putative JO40_RS00560 PF01743 Poly A polymerase head domain JO40_RS00560 PF12627 Probable RNA and SrmB- binding site of polymerase A JO40_RS00575 PF00011 Hsp20/alpha crystallin family JO40_RS00585 PF00550 Phosphopantetheine attachment site JO40_RS00590 PF01783 Ribosomal L32p protein family JO40_RS00600 PF02310 B12 binding domain JO40_RS00610 PF16811 TRAP transporter T-component JO40_RS00620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JO40_RS00620 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JO40_RS00630 PF13742 OB-fold nucleic acid binding domain JO40_RS00630 PF02601 Exonuclease VII, large subunit JO40_RS00635 PF13654 AAA domain JO40_RS00635 PF05362 Lon protease (S16) C-terminal proteolytic domain JO40_RS00645 PF01814 Hemerythrin HHE cation binding domain JO40_RS00650 PF17674 HHH domain JO40_RS00650 PF16921 Tex protein YqgF-like domain JO40_RS00650 PF09371 Tex-like protein N-terminal domain JO40_RS00650 PF00575 S1 RNA binding domain JO40_RS00660 PF17760 UvrA interaction domain JO40_RS00660 PF17755 UvrA DNA-binding domain JO40_RS00660 PF00005 ABC transporter JO40_RS00665 PF02609 Exonuclease VII small subunit JO40_RS00670 PF08676 MutL C terminal dimerisation domain JO40_RS00670 PF01119 DNA mismatch repair protein, C-terminal domain JO40_RS00675 PF02743 Cache domain JO40_RS00675 PF00672 HAMP domain JO40_RS00675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS00675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS00675 PF02743 Cache domain JO40_RS00675 PF00672 HAMP domain JO40_RS00680 PF00072 Response regulator receiver domain JO40_RS00680 PF01627 Hpt domain JO40_RS00680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JO40_RS00680 PF00672 HAMP domain JO40_RS00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO40_RS00680 PF00512 His Kinase A (phospho-acceptor) domain JO40_RS00685 PF00072 Response regulator receiver domain JO40_RS00685 PF00486 Transcriptional regulatory protein, C terminal JO40_RS00695 PF08241 Methyltransferase domain JO40_RS00710 PF00899 ThiF family JO40_RS00715 PF00953 Glycosyl transferase family 4 JO40_RS00720 PF00623 RNA polymerase Rpb1, domain 2 JO40_RS00720 PF04997 RNA polymerase Rpb1, domain 1 JO40_RS00720 PF05000 RNA polymerase Rpb1, domain 4 JO40_RS00720 PF04983 RNA polymerase Rpb1, domain 3 JO40_RS00720 PF04998 RNA polymerase Rpb1, domain 5 JO40_RS00725 PF04561 RNA polymerase Rpb2, domain 2 JO40_RS00725 PF04565 RNA polymerase Rpb2, domain 3 JO40_RS00725 PF00562 RNA polymerase Rpb2, domain 6 JO40_RS00725 PF04563 RNA polymerase beta subunit JO40_RS00725 PF04560 RNA polymerase Rpb2, domain 7 JO40_RS00725 PF10385 RNA polymerase beta subunit external 1 domain JO40_RS00730 PF16320 Ribosomal protein L7/L12 dimerisation domain JO40_RS00730 PF00542 Ribosomal protein L7/L12 C-terminal domain JO40_RS00735 PF00466 Ribosomal protein L10 JO40_RS00740 PF00687 Ribosomal protein L1p/L10e family JO40_RS00745 PF03946 Ribosomal protein L11, N-terminal domain JO40_RS00745 PF00298 Ribosomal protein L11, RNA binding domain JO40_RS00750 PF00467 KOW motif JO40_RS00750 PF02357 Transcription termination factor nusG JO40_RS00755 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JO40_RS00765 PF00471 Ribosomal protein L33 JO40_RS00785 PF00005 ABC transporter JO40_RS00785 PF03412 Peptidase C39 family JO40_RS00785 PF00664 ABC transporter transmembrane region JO40_RS00815 PF00183 Hsp90 protein JO40_RS00825 PF00580 UvrD/REP helicase N-terminal domain JO40_RS00825 PF13361 UvrD-like helicase C-terminal domain JO40_RS00830 PF00005 ABC transporter JO40_RS00830 PF00664 ABC transporter transmembrane region JO40_RS00835 PF00005 ABC transporter JO40_RS00835 PF00664 ABC transporter transmembrane region JO40_RS00840 PF07687 Peptidase dimerisation domain JO40_RS00840 PF01546 Peptidase family M20/M25/M40 JO40_RS00860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO40_RS00860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO40_RS00870 PF00730 HhH-GPD superfamily base excision DNA repair protein JO40_RS00875 PF16591 Helical bimodular sensor domain JO40_RS00875 PF00672 HAMP domain JO40_RS00875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS00885 PF02719 Polysaccharide biosynthesis protein JO40_RS00890 PF09820 Predicted AAA-ATPase JO40_RS00890 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS00895 PF03819 MazG nucleotide pyrophosphohydrolase domain JO40_RS00900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO40_RS00900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JO40_RS00910 PF03129 Anticodon binding domain JO40_RS00910 PF02824 TGS domain JO40_RS00910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_RS00910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO40_RS00920 PF00814 Glycoprotease family JO40_RS00935 PF14525 AraC-binding-like domain JO40_RS00935 PF12833 Helix-turn-helix domain JO40_RS00945 PF00664 ABC transporter transmembrane region JO40_RS00945 PF00005 ABC transporter JO40_RS00950 PF00171 Aldehyde dehydrogenase family JO40_RS00955 PF02527 rRNA small subunit methyltransferase G JO40_RS00985 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JO40_RS00995 PF06745 KaiC JO40_RS00995 PF18073 Rubredoxin metal binding domain JO40_RS01000 PF10609 NUBPL iron-transfer P-loop NTPase JO40_RS01005 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS01005 PF09820 Predicted AAA-ATPase JO40_RS01015 PF00005 ABC transporter JO40_RS01020 PF01032 FecCD transport family JO40_RS01025 PF01497 Periplasmic binding protein JO40_RS01030 PF07476 Methylaspartate ammonia-lyase C-terminus JO40_RS01030 PF05034 Methylaspartate ammonia-lyase N-terminus JO40_RS01035 PF06368 Methylaspartate mutase E chain (MutE) JO40_RS01040 PF01979 Amidohydrolase family JO40_RS01050 PF00270 DEAD/DEAH box helicase JO40_RS01050 PF00271 Helicase conserved C-terminal domain JO40_RS01055 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JO40_RS01075 PF00005 ABC transporter JO40_RS01075 PF13732 Domain of unknown function (DUF4162) JO40_RS01080 PF00672 HAMP domain JO40_RS01080 PF07228 Stage II sporulation protein E (SpoIIE) JO40_RS01090 PF03687 Uncharacterised protein family (UPF0164) JO40_RS01095 PF00521 DNA gyrase/topoisomerase IV, subunit A JO40_RS01100 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_RS01105 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_RS01110 PF09338 Glycine/sarcosine/betaine reductase component B subunits JO40_RS01115 PF02677 Epoxyqueuosine reductase QueH JO40_RS01125 PF02617 ATP-dependent Clp protease adaptor protein ClpS JO40_RS01130 PF02861 Clp amino terminal domain, pathogenicity island component JO40_RS01130 PF17871 AAA lid domain JO40_RS01130 PF07724 AAA domain (Cdc48 subfamily) JO40_RS01130 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS01130 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_RS01135 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JO40_RS01140 PF03006 Haemolysin-III related JO40_RS01145 PF12728 Helix-turn-helix domain JO40_RS01145 PF02661 Fic/DOC family JO40_RS01150 PF02190 ATP-dependent protease La (LON) substrate-binding domain JO40_RS01150 PF05362 Lon protease (S16) C-terminal proteolytic domain JO40_RS01150 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS01170 PF13280 WYL domain JO40_RS01170 PF08279 HTH domain JO40_RS01200 PF00691 OmpA family JO40_RS01205 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JO40_RS01205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO40_RS01205 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JO40_RS01205 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JO40_RS01205 PF10371 Domain of unknown function JO40_RS01210 PF00149 Calcineurin-like phosphoesterase JO40_RS01210 PF02872 5'-nucleotidase, C-terminal domain JO40_RS01225 PF00860 Permease family JO40_RS01250 PF03952 Enolase, N-terminal domain JO40_RS01250 PF00113 Enolase, C-terminal TIM barrel domain JO40_RS01255 PF13302 Acetyltransferase (GNAT) domain JO40_RS01260 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JO40_RS01260 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JO40_RS01260 PF01189 16S rRNA methyltransferase RsmB/F JO40_RS01265 PF04298 Putative neutral zinc metallopeptidase JO40_RS01280 PF08241 Methyltransferase domain JO40_RS01305 PF00654 Voltage gated chloride channel JO40_RS01310 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS01310 PF09820 Predicted AAA-ATPase JO40_RS01315 PF10396 GTP-binding protein TrmE N-terminus JO40_RS01315 PF12631 MnmE helical domain JO40_RS01315 PF01926 50S ribosome-binding GTPase JO40_RS01320 PF01569 PAP2 superfamily JO40_RS01330 PF14353 CpXC protein JO40_RS01345 PF00501 AMP-binding enzyme JO40_RS01350 PF02195 ParB-like nuclease domain JO40_RS01350 PF17762 HTH domain found in ParB protein JO40_RS01360 PF01476 LysM domain JO40_RS01360 PF08525 Opacity-associated protein A N-terminal motif JO40_RS01360 PF01551 Peptidase family M23 JO40_RS01365 PF17768 RecJ OB domain JO40_RS01365 PF01368 DHH family JO40_RS01365 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JO40_RS01365 PF02272 DHHA1 domain JO40_RS01370 PF02885 Glycosyl transferase family, helical bundle domain JO40_RS01370 PF00591 Glycosyl transferase family, a/b domain JO40_RS01370 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JO40_RS01375 PF17827 PrmC N-terminal domain JO40_RS01375 PF05175 Methyltransferase small domain JO40_RS01380 PF03462 PCRF domain JO40_RS01380 PF00472 RF-1 domain JO40_RS01385 PF00696 Amino acid kinase family JO40_RS01390 PF01554 MatE JO40_RS01400 PF01165 Ribosomal protein S21 JO40_RS01410 PF02127 Aminopeptidase I zinc metalloprotease (M18) JO40_RS01415 PF01134 Glucose inhibited division protein A JO40_RS01415 PF13932 GidA associated domain JO40_RS01420 PF00580 UvrD/REP helicase N-terminal domain JO40_RS01420 PF13361 UvrD-like helicase C-terminal domain JO40_RS01440 PF00158 Sigma-54 interaction domain JO40_RS01440 PF01590 GAF domain JO40_RS01490 PF03167 Uracil DNA glycosylase superfamily JO40_RS01495 PF00270 DEAD/DEAH box helicase JO40_RS01495 PF00271 Helicase conserved C-terminal domain JO40_RS01495 PF18074 Primosomal protein N C-terminal domain JO40_RS01495 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JO40_RS01495 PF17764 3′ DNA-binding domain (3′BD) JO40_RS01500 PF06574 FAD synthetase JO40_RS01500 PF01687 Riboflavin kinase JO40_RS01505 PF00312 Ribosomal protein S15 JO40_RS01510 PF00013 KH domain JO40_RS01510 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JO40_RS01510 PF00575 S1 RNA binding domain JO40_RS01510 PF01138 3' exoribonuclease family, domain 1 JO40_RS01510 PF03725 3' exoribonuclease family, domain 2 JO40_RS01515 PF00692 dUTPase JO40_RS01530 PF01479 S4 domain JO40_RS01530 PF00849 RNA pseudouridylate synthase JO40_RS01535 PF00155 Aminotransferase class I and II JO40_RS01565 PF00664 ABC transporter transmembrane region JO40_RS01565 PF00005 ABC transporter JO40_RS01575 PF00664 ABC transporter transmembrane region JO40_RS01575 PF00005 ABC transporter JO40_RS01580 PF14821 Threonine synthase N terminus JO40_RS01580 PF00291 Pyridoxal-phosphate dependent enzyme JO40_RS01585 PF02559 CarD-like/TRCF domain JO40_RS01590 PF02542 YgbB family JO40_RS01590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JO40_RS01595 PF02542 YgbB family JO40_RS01620 PF08544 GHMP kinases C terminal JO40_RS01620 PF10509 Galactokinase galactose-binding signature JO40_RS01625 PF00795 Carbon-nitrogen hydrolase JO40_RS01630 PF00595 PDZ domain JO40_RS01640 PF00072 Response regulator receiver domain JO40_RS01660 PF02403 Seryl-tRNA synthetase N-terminal domain JO40_RS01660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_RS01675 PF09369 Domain of unknown function (DUF1998) JO40_RS01675 PF00271 Helicase conserved C-terminal domain JO40_RS01675 PF00270 DEAD/DEAH box helicase JO40_RS01690 PF00117 Glutamine amidotransferase class-I JO40_RS01690 PF06418 CTP synthase N-terminus JO40_RS01720 PF01168 Alanine racemase, N-terminal domain JO40_RS01745 PF13732 Domain of unknown function (DUF4162) JO40_RS01745 PF00005 ABC transporter JO40_RS01760 PF01145 SPFH domain / Band 7 family JO40_RS01765 PF01145 SPFH domain / Band 7 family JO40_RS01780 PF00664 ABC transporter transmembrane region JO40_RS01780 PF00005 ABC transporter JO40_RS01785 PF00005 ABC transporter JO40_RS01790 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JO40_RS01790 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JO40_RS01810 PF01812 5-formyltetrahydrofolate cyclo-ligase family JO40_RS01820 PF00830 Ribosomal L28 family JO40_RS01830 PF00005 ABC transporter JO40_RS01830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS01835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS01835 PF00005 ABC transporter JO40_RS01850 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS01860 PF04072 Leucine carboxyl methyltransferase JO40_RS01865 PF02508 Rnf-Nqr subunit, membrane protein JO40_RS01870 PF02508 Rnf-Nqr subunit, membrane protein JO40_RS01880 PF03116 NQR2, RnfD, RnfE family JO40_RS01885 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JO40_RS01885 PF13375 RnfC Barrel sandwich hybrid domain JO40_RS01885 PF10531 SLBB domain JO40_RS01885 PF13237 4Fe-4S dicluster domain JO40_RS01895 PF13519 von Willebrand factor type A domain JO40_RS01910 PF00391 PEP-utilising enzyme, mobile domain JO40_RS01910 PF02896 PEP-utilising enzyme, TIM barrel domain JO40_RS01920 PF16314 Domain of unknown function (DUF4954) JO40_RS01935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS01935 PF00672 HAMP domain JO40_RS01935 PF02743 Cache domain JO40_RS01945 PF00572 Ribosomal protein L13 JO40_RS01950 PF00380 Ribosomal protein S9/S16 JO40_RS01955 PF02631 RecX family JO40_RS01960 PF00072 Response regulator receiver domain JO40_RS01960 PF00196 Bacterial regulatory proteins, luxR family JO40_RS01965 PF00596 Class II Aldolase and Adducin N-terminal domain JO40_RS01985 PF01479 S4 domain JO40_RS01985 PF00849 RNA pseudouridylate synthase JO40_RS01990 PF00579 tRNA synthetases class I (W and Y) JO40_RS01995 PF00391 PEP-utilising enzyme, mobile domain JO40_RS01995 PF00224 Pyruvate kinase, barrel domain JO40_RS01995 PF02887 Pyruvate kinase, alpha/beta domain JO40_RS02040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JO40_RS02040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JO40_RS02055 PF01921 tRNA synthetases class I (K) JO40_RS02060 PF01430 Hsp33 protein JO40_RS02065 PF02570 Precorrin-8X methylmutase JO40_RS02070 PF13649 Methyltransferase domain JO40_RS02080 PF03009 Glycerophosphoryl diester phosphodiesterase family JO40_RS02090 PF00708 Acylphosphatase JO40_RS02115 PF01196 Ribosomal protein L17 JO40_RS02120 PF01000 RNA polymerase Rpb3/RpoA insert domain JO40_RS02120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JO40_RS02120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JO40_RS02125 PF00411 Ribosomal protein S11 JO40_RS02130 PF00416 Ribosomal protein S13/S18 JO40_RS02135 PF00344 SecY translocase JO40_RS02140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JO40_RS02145 PF00327 Ribosomal protein L30p/L7e JO40_RS02150 PF03719 Ribosomal protein S5, C-terminal domain JO40_RS02150 PF00333 Ribosomal protein S5, N-terminal domain JO40_RS02155 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JO40_RS02160 PF00347 Ribosomal protein L6 JO40_RS02165 PF00410 Ribosomal protein S8 JO40_RS02170 PF00281 Ribosomal protein L5 JO40_RS02170 PF00673 ribosomal L5P family C-terminus JO40_RS02175 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JO40_RS02175 PF00467 KOW motif JO40_RS02180 PF00238 Ribosomal protein L14p/L23e JO40_RS02185 PF00366 Ribosomal protein S17 JO40_RS02190 PF00831 Ribosomal L29 protein JO40_RS02195 PF00252 Ribosomal protein L16p/L10e JO40_RS02200 PF07650 KH domain JO40_RS02200 PF00189 Ribosomal protein S3, C-terminal domain JO40_RS02205 PF00237 Ribosomal protein L22p/L17e JO40_RS02210 PF00203 Ribosomal protein S19 JO40_RS02215 PF00181 Ribosomal Proteins L2, RNA binding domain JO40_RS02215 PF03947 Ribosomal Proteins L2, C-terminal domain JO40_RS02220 PF00276 Ribosomal protein L23 JO40_RS02225 PF00573 Ribosomal protein L4/L1 family JO40_RS02230 PF00297 Ribosomal protein L3 JO40_RS02235 PF00338 Ribosomal protein S10p/S20e JO40_RS02240 PF00009 Elongation factor Tu GTP binding domain JO40_RS02240 PF03144 Elongation factor Tu domain 2 JO40_RS02240 PF03143 Elongation factor Tu C-terminal domain JO40_RS02255 PF17191 RecG wedge domain JO40_RS02255 PF00270 DEAD/DEAH box helicase JO40_RS02255 PF00271 Helicase conserved C-terminal domain JO40_RS02280 PF03577 Peptidase family C69 JO40_RS02285 PF00672 HAMP domain JO40_RS02285 PF12729 Four helix bundle sensory module for signal transduction JO40_RS02285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS02290 PF12169 DNA polymerase III subunits gamma and tau domain III JO40_RS02295 PF00849 RNA pseudouridylate synthase JO40_RS02305 PF01926 50S ribosome-binding GTPase JO40_RS02310 PF00342 Phosphoglucose isomerase JO40_RS02315 PF02127 Aminopeptidase I zinc metalloprotease (M18) JO40_RS02320 PF00581 Rhodanese-like domain JO40_RS02325 PF03880 DbpA RNA binding domain JO40_RS02355 PF03390 2-hydroxycarboxylate transporter family JO40_RS02380 PF00005 ABC transporter JO40_RS02385 PF01458 Uncharacterized protein family (UPF0051) JO40_RS02395 PF03030 Inorganic H+ pyrophosphatase JO40_RS02415 PF00072 Response regulator receiver domain JO40_RS02415 PF01339 CheB methylesterase JO40_RS02420 PF03705 CheR methyltransferase, all-alpha domain JO40_RS02420 PF01739 CheR methyltransferase, SAM binding domain JO40_RS02435 PF12399 Branched-chain amino acid ATP-binding cassette transporter JO40_RS02435 PF00005 ABC transporter JO40_RS02440 PF01195 Peptidyl-tRNA hydrolase JO40_RS02450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JO40_RS02455 PF00672 HAMP domain JO40_RS02455 PF02743 Cache domain JO40_RS02455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS02460 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS02465 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_RS02465 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS02470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS02470 PF00005 ABC transporter JO40_RS02475 PF00005 ABC transporter JO40_RS02475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS02480 PF16916 Dimerisation domain of Zinc Transporter JO40_RS02480 PF01545 Cation efflux family JO40_RS02485 PF02557 D-alanyl-D-alanine carboxypeptidase JO40_RS02505 PF00684 DnaJ central domain JO40_RS02505 PF01556 DnaJ C terminal domain JO40_RS02505 PF00226 DnaJ domain JO40_RS02510 PF00012 Hsp70 protein JO40_RS02515 PF01025 GrpE JO40_RS02520 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS02530 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS02535 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS02545 PF00005 ABC transporter JO40_RS02550 PF02571 Precorrin-6x reductase CbiJ/CobK JO40_RS02555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JO40_RS02555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_RS02560 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS02560 PF09820 Predicted AAA-ATPase JO40_RS02575 PF01554 MatE JO40_RS02585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS02585 PF00672 HAMP domain JO40_RS02585 PF02743 Cache domain JO40_RS02590 PF01890 Cobalamin synthesis G C-terminus JO40_RS02590 PF11761 Cobalamin biosynthesis central region JO40_RS02590 PF11760 Cobalamin synthesis G N-terminal JO40_RS02595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_RS02600 PF13614 AAA domain JO40_RS02625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO40_RS02625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JO40_RS02630 PF00698 Acyl transferase domain JO40_RS02650 PF02384 N-6 DNA Methylase JO40_RS02660 PF07055 Enoyl reductase FAD binding domain JO40_RS02660 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JO40_RS02660 PF12241 Trans-2-enoyl-CoA reductase catalytic region JO40_RS02670 PF17191 RecG wedge domain JO40_RS02670 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JO40_RS02670 PF00270 DEAD/DEAH box helicase JO40_RS02680 PF00364 Biotin-requiring enzyme JO40_RS02685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JO40_RS02685 PF00289 Biotin carboxylase, N-terminal domain JO40_RS02685 PF02785 Biotin carboxylase C-terminal domain JO40_RS02690 PF01039 Carboxyl transferase domain JO40_RS02695 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JO40_RS02700 PF00221 Aromatic amino acid lyase JO40_RS02715 PF17863 AAA lid domain JO40_RS02715 PF07726 ATPase family associated with various cellular activities (AAA) JO40_RS02755 PF01425 Amidase JO40_RS02760 PF02934 GatB/GatE catalytic domain JO40_RS02760 PF02637 GatB domain JO40_RS02855 PF00561 alpha/beta hydrolase fold JO40_RS02900 PF00005 ABC transporter JO40_RS03020 PF01381 Helix-turn-helix JO40_RS03030 PF07804 HipA-like C-terminal domain JO40_RS03060 PF02525 Flavodoxin-like fold JO40_RS03075 PF00005 ABC transporter JO40_RS03075 PF00664 ABC transporter transmembrane region JO40_RS03080 PF04954 Siderophore-interacting protein JO40_RS03080 PF08021 Siderophore-interacting FAD-binding domain JO40_RS03080 PF00005 ABC transporter JO40_RS03080 PF00664 ABC transporter transmembrane region JO40_RS03110 PF00561 alpha/beta hydrolase fold JO40_RS03130 PF00664 ABC transporter transmembrane region JO40_RS03130 PF00005 ABC transporter JO40_RS03135 PF00664 ABC transporter transmembrane region JO40_RS03135 PF00005 ABC transporter JO40_RS03140 PF01515 Phosphate acetyl/butaryl transferase JO40_RS03145 PF13174 Tetratricopeptide repeat JO40_RS03145 PF13176 Tetratricopeptide repeat JO40_RS03150 PF07733 Bacterial DNA polymerase III alpha NTPase domain JO40_RS03150 PF02811 PHP domain JO40_RS03150 PF14579 Helix-hairpin-helix motif JO40_RS03150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JO40_RS03160 PF17239 Family of unknown function (DUF5312) JO40_RS03175 PF08439 Oligopeptidase F JO40_RS03175 PF01432 Peptidase family M3 JO40_RS03185 PF02661 Fic/DOC family JO40_RS03185 PF12728 Helix-turn-helix domain JO40_RS03195 PF01266 FAD dependent oxidoreductase JO40_RS03195 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JO40_RS03200 PF04324 BFD-like [2Fe-2S] binding domain JO40_RS03200 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS03215 PF00072 Response regulator receiver domain JO40_RS03215 PF00486 Transcriptional regulatory protein, C terminal JO40_RS03225 PF00005 ABC transporter JO40_RS03235 PF03099 Biotin/lipoate A/B protein ligase family JO40_RS03235 PF10437 Bacterial lipoate protein ligase C-terminus JO40_RS03245 PF00005 ABC transporter JO40_RS03250 PF00392 Bacterial regulatory proteins, gntR family JO40_RS03250 PF00155 Aminotransferase class I and II JO40_RS03255 PF00005 ABC transporter JO40_RS03285 PF06180 Cobalt chelatase (CbiK) JO40_RS03290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_RS03295 PF07685 CobB/CobQ-like glutamine amidotransferase domain JO40_RS03295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JO40_RS03300 PF00464 Serine hydroxymethyltransferase JO40_RS03310 PF00571 CBS domain JO40_RS03310 PF00478 IMP dehydrogenase / GMP reductase domain JO40_RS03315 PF01066 CDP-alcohol phosphatidyltransferase JO40_RS03320 PF00953 Glycosyl transferase family 4 JO40_RS03350 PF00291 Pyridoxal-phosphate dependent enzyme JO40_RS03390 PF04468 PSP1 C-terminal conserved region JO40_RS03395 PF03885 Protein of unknown function (DUF327) JO40_RS03405 PF04225 Opacity-associated protein A LysM-like domain JO40_RS03405 PF01551 Peptidase family M23 JO40_RS03410 PF01409 tRNA synthetases class II core domain (F) JO40_RS03420 PF00128 Alpha amylase, catalytic domain JO40_RS03430 PF12683 Protein of unknown function (DUF3798) JO40_RS03435 PF00005 ABC transporter JO40_RS03455 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS03455 PF09820 Predicted AAA-ATPase JO40_RS03460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JO40_RS03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS03465 PF00175 Oxidoreductase NAD-binding domain JO40_RS03465 PF00970 Oxidoreductase FAD-binding domain JO40_RS03465 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JO40_RS03470 PF11849 Domain of unknown function (DUF3369) JO40_RS03490 PF00133 tRNA synthetases class I (I, L, M and V) JO40_RS03490 PF08264 Anticodon-binding domain of tRNA JO40_RS03495 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JO40_RS03515 PF17758 Proteasomal ATPase OB N-terminal domain JO40_RS03515 PF16450 Proteasomal ATPase OB C-terminal domain JO40_RS03515 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS03535 PF02661 Fic/DOC family JO40_RS03535 PF13784 Fic/DOC family N-terminal JO40_RS03550 PF00005 ABC transporter JO40_RS03555 PF00664 ABC transporter transmembrane region JO40_RS03555 PF00005 ABC transporter JO40_RS03565 PF03852 DNA mismatch endonuclease Vsr JO40_RS03570 PF00145 C-5 cytosine-specific DNA methylase JO40_RS03575 PF09565 NgoFVII restriction endonuclease JO40_RS03590 PF00005 ABC transporter JO40_RS03590 PF00664 ABC transporter transmembrane region JO40_RS03595 PF00440 Bacterial regulatory proteins, tetR family JO40_RS03595 PF17932 Tetracyclin repressor-like, C-terminal domain JO40_RS03600 PF04343 Protein of unknown function, DUF488 JO40_RS03605 PF01613 Flavin reductase like domain JO40_RS03610 PF01212 Beta-eliminating lyase JO40_RS03615 PF00771 FHIPEP family JO40_RS03625 PF01311 Bacterial export proteins, family 1 JO40_RS03630 PF01313 Bacterial export proteins, family 3 JO40_RS03655 PF01979 Amidohydrolase family JO40_RS03670 PF09820 Predicted AAA-ATPase JO40_RS03670 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS03685 PF02743 Cache domain JO40_RS03685 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_RS03685 PF00672 HAMP domain JO40_RS03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JO40_RS03690 PF03466 LysR substrate binding domain JO40_RS03700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_RS03705 PF00005 ABC transporter JO40_RS03705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS03710 PF00005 ABC transporter JO40_RS03710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS03715 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS03715 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_RS03720 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS03730 PF08240 Alcohol dehydrogenase GroES-like domain JO40_RS03730 PF00107 Zinc-binding dehydrogenase JO40_RS03735 PF07683 Cobalamin synthesis protein cobW C-terminal domain JO40_RS03735 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO40_RS03740 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component JO40_RS03755 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component JO40_RS03775 PF02971 Formiminotransferase domain JO40_RS03775 PF07837 Formiminotransferase domain, N-terminal subdomain JO40_RS03780 PF01547 Bacterial extracellular solute-binding protein JO40_RS03790 PF00005 ABC transporter JO40_RS03790 PF08402 TOBE domain JO40_RS03800 PF07687 Peptidase dimerisation domain JO40_RS03800 PF01546 Peptidase family M20/M25/M40 JO40_RS03805 PF07730 Histidine kinase JO40_RS03810 PF00072 Response regulator receiver domain JO40_RS03810 PF00196 Bacterial regulatory proteins, luxR family JO40_RS03815 PF07885 Ion channel JO40_RS03815 PF00027 Cyclic nucleotide-binding domain JO40_RS03820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_RS03820 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS03825 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_RS03870 PF00255 Glutathione peroxidase JO40_RS03890 PF01381 Helix-turn-helix JO40_RS03895 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB JO40_RS03905 PF03023 Lipid II flippase MurJ JO40_RS03910 PF02867 Ribonucleotide reductase, barrel domain JO40_RS03910 PF03477 ATP cone domain JO40_RS03910 PF00317 Ribonucleotide reductase, all-alpha domain JO40_RS03915 PF00274 Fructose-bisphosphate aldolase class-I JO40_RS03940 PF06071 Protein of unknown function (DUF933) JO40_RS03940 PF01926 50S ribosome-binding GTPase JO40_RS03945 PF01343 Peptidase family S49 JO40_RS03950 PF01208 Uroporphyrinogen decarboxylase (URO-D) JO40_RS03970 PF02607 B12 binding domain JO40_RS03970 PF02310 B12 binding domain JO40_RS03975 PF14572 Phosphoribosyl synthetase-associated domain JO40_RS03975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JO40_RS03980 PF00005 ABC transporter JO40_RS03980 PF00664 ABC transporter transmembrane region JO40_RS03985 PF00664 ABC transporter transmembrane region JO40_RS03985 PF00005 ABC transporter JO40_RS03990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS03990 PF02743 Cache domain JO40_RS03990 PF00672 HAMP domain JO40_RS03995 PF00753 Metallo-beta-lactamase superfamily JO40_RS04000 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JO40_RS04005 PF01594 AI-2E family transporter JO40_RS04010 PF00268 Ribonucleotide reductase, small chain JO40_RS04015 PF01554 MatE JO40_RS04025 PF03616 Sodium/glutamate symporter JO40_RS04030 PF00672 HAMP domain JO40_RS04030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS04035 PF02743 Cache domain JO40_RS04035 PF00672 HAMP domain JO40_RS04035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS04040 PF01048 Phosphorylase superfamily JO40_RS04085 PF08448 PAS fold JO40_RS04085 PF00563 EAL domain JO40_RS04085 PF00990 Diguanylate cyclase, GGDEF domain JO40_RS04090 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JO40_RS04090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JO40_RS04090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JO40_RS04090 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JO40_RS04095 PF00375 Sodium:dicarboxylate symporter family JO40_RS04105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JO40_RS04110 PF02504 Fatty acid synthesis protein JO40_RS04120 PF00005 ABC transporter JO40_RS04120 PF17912 MalK OB fold domain JO40_RS04120 PF03459 TOBE domain JO40_RS04125 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS04130 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS04140 PF00013 KH domain JO40_RS04140 PF01966 HD domain JO40_RS04140 PF12072 Domain of unknown function (DUF3552) JO40_RS04150 PF00149 Calcineurin-like phosphoesterase JO40_RS04150 PF12320 Type 5 capsule protein repressor C-terminal domain JO40_RS04155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS04155 PF00672 HAMP domain JO40_RS04155 PF17202 Single cache domain 3 JO40_RS04160 PF07702 UTRA domain JO40_RS04160 PF00392 Bacterial regulatory proteins, gntR family JO40_RS04165 PF00005 ABC transporter JO40_RS04175 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS04175 PF09820 Predicted AAA-ATPase JO40_RS04185 PF00258 Flavodoxin JO40_RS04200 PF00883 Cytosol aminopeptidase family, catalytic domain JO40_RS04200 PF02789 Cytosol aminopeptidase family, N-terminal domain JO40_RS04205 PF01661 Macro domain JO40_RS04210 PF02768 DNA polymerase III beta subunit, C-terminal domain JO40_RS04210 PF02767 DNA polymerase III beta subunit, central domain JO40_RS04210 PF00712 DNA polymerase III beta subunit, N-terminal domain JO40_RS04215 PF02463 RecF/RecN/SMC N terminal domain JO40_RS04285 PF05258 Dna[CI] antecedent, DciA JO40_RS04290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JO40_RS04290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JO40_RS04315 PF07238 PilZ domain JO40_RS04330 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS04335 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JO40_RS04335 PF12557 Cob(I)alamin adenosyltransferase N terminal JO40_RS04340 PF03600 Citrate transporter JO40_RS04345 PF00176 SNF2 family N-terminal domain JO40_RS04345 PF12419 SNF2 Helicase protein JO40_RS04345 PF00271 Helicase conserved C-terminal domain JO40_RS04350 PF09820 Predicted AAA-ATPase JO40_RS04350 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS04375 PF02661 Fic/DOC family JO40_RS04380 PF00892 EamA-like transporter family JO40_RS04385 PF01925 Sulfite exporter TauE/SafE JO40_RS04390 PF00962 Adenosine/AMP deaminase JO40_RS04405 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS04410 PF08402 TOBE domain JO40_RS04410 PF00005 ABC transporter JO40_RS04415 PF00672 HAMP domain JO40_RS04415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS04415 PF02743 Cache domain JO40_RS04430 PF01470 Pyroglutamyl peptidase JO40_RS04435 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS04435 PF09820 Predicted AAA-ATPase JO40_RS04440 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JO40_RS04440 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JO40_RS04440 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JO40_RS04460 PF00679 Elongation factor G C-terminus JO40_RS04460 PF14492 Elongation Factor G, domain II JO40_RS04460 PF03764 Elongation factor G, domain IV JO40_RS04460 PF00009 Elongation factor Tu GTP binding domain JO40_RS04460 PF03144 Elongation factor Tu domain 2 JO40_RS04465 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JO40_RS04475 PF02254 TrkA-N domain JO40_RS04475 PF02080 TrkA-C domain JO40_RS04480 PF03989 DNA gyrase C-terminal domain, beta-propeller JO40_RS04480 PF00521 DNA gyrase/topoisomerase IV, subunit A JO40_RS04500 PF01680 SOR/SNZ family JO40_RS04510 PF01171 PP-loop family JO40_RS04525 PF04452 RNA methyltransferase JO40_RS04540 PF02386 Cation transport protein JO40_RS04545 PF02254 TrkA-N domain JO40_RS04545 PF02080 TrkA-C domain JO40_RS04555 PF01850 PIN domain JO40_RS04560 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JO40_RS04565 PF00005 ABC transporter JO40_RS04570 PF17863 AAA lid domain JO40_RS04570 PF07726 ATPase family associated with various cellular activities (AAA) JO40_RS04575 PF00571 CBS domain JO40_RS04575 PF03471 Transporter associated domain JO40_RS04575 PF01595 Cyclin M transmembrane N-terminal domain JO40_RS04580 PF03471 Transporter associated domain JO40_RS04580 PF00571 CBS domain JO40_RS04580 PF01595 Cyclin M transmembrane N-terminal domain JO40_RS04595 PF00270 DEAD/DEAH box helicase JO40_RS04595 PF00570 HRDC domain JO40_RS04595 PF09382 RQC domain JO40_RS04595 PF00271 Helicase conserved C-terminal domain JO40_RS04595 PF16124 RecQ zinc-binding JO40_RS04600 PF13395 HNH endonuclease JO40_RS04600 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 JO40_RS04600 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 JO40_RS04600 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 JO40_RS04605 PF01867 CRISPR associated protein Cas1 JO40_RS04610 PF09827 CRISPR associated protein Cas2 JO40_RS04625 PF00005 ABC transporter JO40_RS04625 PF00664 ABC transporter transmembrane region JO40_RS04640 PF08245 Mur ligase middle domain JO40_RS04640 PF02875 Mur ligase family, glutamate ligase domain JO40_RS04660 PF00005 ABC transporter JO40_RS04660 PF03412 Peptidase C39 family JO40_RS04660 PF00664 ABC transporter transmembrane region JO40_RS04665 PF00664 ABC transporter transmembrane region JO40_RS04665 PF00005 ABC transporter JO40_RS04665 PF03412 Peptidase C39 family JO40_RS04670 PF13439 Glycosyltransferase Family 4 JO40_RS04670 PF00534 Glycosyl transferases group 1 JO40_RS04675 PF08402 TOBE domain JO40_RS04675 PF00005 ABC transporter JO40_RS04680 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS04685 PF00990 Diguanylate cyclase, GGDEF domain JO40_RS04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS04690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_RS04695 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JO40_RS04695 PF01565 FAD binding domain JO40_RS04700 PF01406 tRNA synthetases class I (C) catalytic domain JO40_RS04700 PF09190 DALR domain JO40_RS04715 PF01841 Transglutaminase-like superfamily JO40_RS04720 PF02386 Cation transport protein JO40_RS04725 PF02254 TrkA-N domain JO40_RS04725 PF02080 TrkA-C domain JO40_RS04730 PF12705 PD-(D/E)XK nuclease superfamily JO40_RS04780 PF08032 RNA 2'-O ribose methyltransferase substrate binding JO40_RS04780 PF00588 SpoU rRNA Methylase family JO40_RS04810 PF00158 Sigma-54 interaction domain JO40_RS04810 PF13185 GAF domain JO40_RS04810 PF02954 Bacterial regulatory protein, Fis family JO40_RS04830 PF00834 Ribulose-phosphate 3 epimerase family JO40_RS04840 PF02223 Thymidylate kinase JO40_RS04850 PF01103 Surface antigen JO40_RS04850 PF07244 Surface antigen variable number repeat JO40_RS04860 PF05190 MutS family domain IV JO40_RS04860 PF05192 MutS domain III JO40_RS04860 PF05188 MutS domain II JO40_RS04860 PF00488 MutS domain V JO40_RS04860 PF01624 MutS domain I JO40_RS04865 PF09028 Mac 1 JO40_RS04870 PF00005 ABC transporter JO40_RS04885 PF02743 Cache domain JO40_RS04885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS04885 PF00672 HAMP domain JO40_RS04925 PF09820 Predicted AAA-ATPase JO40_RS04925 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS04930 PF03063 Prismane/CO dehydrogenase family JO40_RS04945 PF08279 HTH domain JO40_RS04945 PF02237 Biotin protein ligase C terminal domain JO40_RS04945 PF03099 Biotin/lipoate A/B protein ligase family JO40_RS04950 PF00501 AMP-binding enzyme JO40_RS04950 PF13193 AMP-binding enzyme C-terminal domain JO40_RS04955 PF02801 Beta-ketoacyl synthase, C-terminal domain JO40_RS04955 PF00109 Beta-ketoacyl synthase, N-terminal domain JO40_RS04985 PF07676 WD40-like Beta Propeller Repeat JO40_RS04985 PF00326 Prolyl oligopeptidase family JO40_RS04990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JO40_RS04990 PF00128 Alpha amylase, catalytic domain JO40_RS05000 PF00266 Aminotransferase class-V JO40_RS05005 PF01761 3-dehydroquinate synthase JO40_RS05010 PF01048 Phosphorylase superfamily JO40_RS05020 PF00664 ABC transporter transmembrane region JO40_RS05020 PF00005 ABC transporter JO40_RS05030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_RS05045 PF00749 tRNA synthetases class I (E and Q), catalytic domain JO40_RS05055 PF02595 Glycerate kinase family JO40_RS05060 PF00403 Heavy-metal-associated domain JO40_RS05070 PF00293 NUDIX domain JO40_RS05075 PF00210 Ferritin-like domain JO40_RS05080 PF10417 C-terminal domain of 1-Cys peroxiredoxin JO40_RS05080 PF00578 AhpC/TSA family JO40_RS05085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JO40_RS05085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JO40_RS05100 PF16193 AAA C-terminal domain JO40_RS05100 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS05100 PF12002 MgsA AAA+ ATPase C terminal JO40_RS05105 PF05343 M42 glutamyl aminopeptidase JO40_RS05110 PF00756 Putative esterase JO40_RS05110 PF01476 LysM domain JO40_RS05120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_RS05120 PF03129 Anticodon binding domain JO40_RS05140 PF00933 Glycosyl hydrolase family 3 N terminal domain JO40_RS05140 PF01915 Glycosyl hydrolase family 3 C-terminal domain JO40_RS05165 PF00005 ABC transporter JO40_RS05170 PF00005 ABC transporter JO40_RS05250 PF00005 ABC transporter JO40_RS05300 PF13419 Haloacid dehalogenase-like hydrolase JO40_RS05320 PF04954 Siderophore-interacting protein JO40_RS05320 PF08021 Siderophore-interacting FAD-binding domain JO40_RS05320 PF00664 ABC transporter transmembrane region JO40_RS05320 PF00005 ABC transporter JO40_RS05350 PF00583 Acetyltransferase (GNAT) family JO40_RS05385 PF00005 ABC transporter JO40_RS05400 PF00440 Bacterial regulatory proteins, tetR family JO40_RS05420 PF01661 Macro domain JO40_RS05440 PF00990 Diguanylate cyclase, GGDEF domain JO40_RS05440 PF00072 Response regulator receiver domain JO40_RS05455 PF01207 Dihydrouridine synthase (Dus) JO40_RS05490 PF04539 Sigma-70 region 3 JO40_RS05490 PF04545 Sigma-70, region 4 JO40_RS05490 PF04542 Sigma-70 region 2 JO40_RS05500 PF10609 NUBPL iron-transfer P-loop NTPase JO40_RS05505 PF00448 SRP54-type protein, GTPase domain JO40_RS05510 PF00155 Aminotransferase class I and II JO40_RS05540 PF03963 Flagellar hook capping protein - N-terminal region JO40_RS05545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_RS05545 PF07559 Flagellar basal body protein FlaE JO40_RS05545 PF00460 Flagella basal body rod protein JO40_RS05555 PF01618 MotA/TolQ/ExbB proton channel family JO40_RS05560 PF13677 Membrane MotB of proton-channel complex MotA/MotB JO40_RS05560 PF00691 OmpA family JO40_RS05565 PF03748 Flagellar basal body-associated protein FliL JO40_RS05570 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JO40_RS05570 PF02154 Flagellar motor switch protein FliM JO40_RS05575 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JO40_RS05575 PF04509 CheC-like family JO40_RS05585 PF00813 FliP family JO40_RS05625 PF02423 Ornithine cyclodeaminase/mu-crystallin family JO40_RS05630 PF10145 Phage-related minor tail protein JO40_RS05630 PF01551 Peptidase family M23 JO40_RS05630 PF01464 Transglycosylase SLT domain JO40_RS05650 PF01926 50S ribosome-binding GTPase JO40_RS05650 PF16360 GTP-binding GTPase Middle Region JO40_RS05650 PF13167 GTP-binding GTPase N-terminal JO40_RS05665 PF01207 Dihydrouridine synthase (Dus) JO40_RS05670 PF01026 TatD related DNase JO40_RS05680 PF00990 Diguanylate cyclase, GGDEF domain JO40_RS05685 PF00990 Diguanylate cyclase, GGDEF domain JO40_RS05690 PF17191 RecG wedge domain JO40_RS05690 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JO40_RS05690 PF00270 DEAD/DEAH box helicase JO40_RS05705 PF00204 DNA gyrase B JO40_RS05705 PF00986 DNA gyrase B subunit, carboxyl terminus JO40_RS05705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO40_RS05705 PF01751 Toprim domain JO40_RS05710 PF11638 DnaA N-terminal domain JO40_RS05710 PF08299 Bacterial dnaA protein helix-turn-helix JO40_RS05710 PF00308 Bacterial dnaA protein JO40_RS05715 PF17862 AAA+ lid domain JO40_RS05715 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS05715 PF01434 Peptidase family M41 JO40_RS05750 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS05760 PF00005 ABC transporter JO40_RS05760 PF12704 MacB-like periplasmic core domain JO40_RS05760 PF02687 FtsX-like permease family JO40_RS05765 PF02492 CobW/HypB/UreG, nucleotide-binding domain JO40_RS05785 PF01625 Peptide methionine sulfoxide reductase JO40_RS05785 PF01641 SelR domain JO40_RS05805 PF02719 Polysaccharide biosynthesis protein JO40_RS05820 PF02517 CPBP intramembrane metalloprotease JO40_RS05830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO40_RS05840 PF00111 2Fe-2S iron-sulfur cluster binding domain JO40_RS05840 PF01799 [2Fe-2S] binding domain JO40_RS05890 PF00171 Aldehyde dehydrogenase family JO40_RS05900 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_RS05905 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) JO40_RS05910 PF09338 Glycine/sarcosine/betaine reductase component B subunits JO40_RS05915 PF01791 DeoC/LacD family aldolase JO40_RS05920 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JO40_RS05920 PF08240 Alcohol dehydrogenase GroES-like domain JO40_RS05925 PF00324 Amino acid permease JO40_RS05930 PF01687 Riboflavin kinase JO40_RS05930 PF06574 FAD synthetase JO40_RS05935 PF05524 PEP-utilising enzyme, N-terminal JO40_RS05935 PF00391 PEP-utilising enzyme, mobile domain JO40_RS05935 PF02896 PEP-utilising enzyme, TIM barrel domain JO40_RS05940 PF01926 50S ribosome-binding GTPase JO40_RS05940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JO40_RS05955 PF02743 Cache domain JO40_RS05955 PF00672 HAMP domain JO40_RS05955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS05960 PF01136 Peptidase family U32 JO40_RS05960 PF12392 Collagenase JO40_RS05965 PF00005 ABC transporter JO40_RS05970 PF04539 Sigma-70 region 3 JO40_RS05970 PF03979 Sigma-70 factor, region 1.1 JO40_RS05970 PF04545 Sigma-70, region 4 JO40_RS05970 PF04542 Sigma-70 region 2 JO40_RS05970 PF00140 Sigma-70 factor, region 1.2 JO40_RS05980 PF07687 Peptidase dimerisation domain JO40_RS05980 PF01546 Peptidase family M20/M25/M40 JO40_RS05985 PF13545 Crp-like helix-turn-helix domain JO40_RS05985 PF00027 Cyclic nucleotide-binding domain JO40_RS06000 PF00365 Phosphofructokinase JO40_RS06035 PF01192 RNA polymerase Rpb6 JO40_RS06045 PF01435 Peptidase family M48 JO40_RS06050 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_RS06050 PF02743 Cache domain JO40_RS06050 PF00672 HAMP domain JO40_RS06145 PF02915 Rubrerythrin JO40_RS06150 PF09382 RQC domain JO40_RS06150 PF00270 DEAD/DEAH box helicase JO40_RS06150 PF00570 HRDC domain JO40_RS06150 PF00271 Helicase conserved C-terminal domain JO40_RS06150 PF16124 RecQ zinc-binding JO40_RS06155 PF11967 Recombination protein O N terminal JO40_RS06155 PF02565 Recombination protein O C terminal JO40_RS06165 PF01702 Queuine tRNA-ribosyltransferase JO40_RS06210 PF01791 DeoC/LacD family aldolase JO40_RS06215 PF00210 Ferritin-like domain JO40_RS06220 PF00005 ABC transporter JO40_RS06235 PF01546 Peptidase family M20/M25/M40 JO40_RS06235 PF07687 Peptidase dimerisation domain JO40_RS06240 PF03448 MgtE intracellular N domain JO40_RS06240 PF01769 Divalent cation transporter JO40_RS06240 PF00571 CBS domain JO40_RS06250 PF13419 Haloacid dehalogenase-like hydrolase JO40_RS06255 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS06260 PF00085 Thioredoxin JO40_RS06265 PF04723 Glycine reductase complex selenoprotein A JO40_RS06270 PF04723 Glycine reductase complex selenoprotein A JO40_RS06275 PF00005 ABC transporter JO40_RS06280 PF01032 FecCD transport family JO40_RS06295 PF13519 von Willebrand factor type A domain JO40_RS06295 PF17863 AAA lid domain JO40_RS06295 PF01078 Magnesium chelatase, subunit ChlI JO40_RS06300 PF01078 Magnesium chelatase, subunit ChlI JO40_RS06300 PF17863 AAA lid domain JO40_RS06325 PF18766 SWI2/SNF2 ATPase JO40_RS06325 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JO40_RS06325 PF11867 Domain of unknown function (DUF3387) JO40_RS06330 PF03553 Na+/H+ antiporter family JO40_RS06335 PF01066 CDP-alcohol phosphatidyltransferase JO40_RS06340 PF02229 Transcriptional Coactivator p15 (PC4) JO40_RS06350 PF00793 DAHP synthetase I family JO40_RS06355 PF02926 THUMP domain JO40_RS06355 PF02568 Thiamine biosynthesis protein (ThiI) JO40_RS06380 PF00950 ABC 3 transport family JO40_RS06385 PF00005 ABC transporter JO40_RS06395 PF00005 ABC transporter JO40_RS06395 PF00664 ABC transporter transmembrane region JO40_RS06400 PF00664 ABC transporter transmembrane region JO40_RS06400 PF00005 ABC transporter JO40_RS06430 PF01245 Ribosomal protein L19 JO40_RS06435 PF01746 tRNA (Guanine-1)-methyltransferase JO40_RS06440 PF01782 RimM N-terminal domain JO40_RS06450 PF00886 Ribosomal protein S16 JO40_RS06455 PF02277 Phosphoribosyltransferase JO40_RS06470 PF12704 MacB-like periplasmic core domain JO40_RS06470 PF00005 ABC transporter JO40_RS06470 PF02687 FtsX-like permease family JO40_RS06475 PF00005 ABC transporter JO40_RS06480 PF01479 S4 domain JO40_RS06480 PF00849 RNA pseudouridylate synthase JO40_RS06490 PF02616 Segregation and condensation protein ScpA JO40_RS06495 PF00154 recA bacterial DNA recombination protein JO40_RS06505 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS06505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JO40_RS06540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JO40_RS06540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JO40_RS06540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JO40_RS06540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JO40_RS06545 PF02308 MgtC family JO40_RS06560 PF07669 Eco57I restriction-modification methylase JO40_RS06565 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JO40_RS06565 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JO40_RS06570 PF01554 MatE JO40_RS06575 PF02743 Cache domain JO40_RS06575 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_RS06575 PF00672 HAMP domain JO40_RS06580 PF00871 Acetokinase family JO40_RS06600 PF00166 Chaperonin 10 Kd subunit JO40_RS06605 PF03979 Sigma-70 factor, region 1.1 JO40_RS06605 PF04539 Sigma-70 region 3 JO40_RS06605 PF04542 Sigma-70 region 2 JO40_RS06605 PF00140 Sigma-70 factor, region 1.2 JO40_RS06605 PF04545 Sigma-70, region 4 JO40_RS06610 PF01170 Putative RNA methylase family UPF0020 JO40_RS06610 PF02926 THUMP domain JO40_RS06615 PF01963 TraB family JO40_RS06625 PF00877 NlpC/P60 family JO40_RS06630 PF00501 AMP-binding enzyme JO40_RS06630 PF13193 AMP-binding enzyme C-terminal domain JO40_RS06640 PF14492 Elongation Factor G, domain II JO40_RS06640 PF03144 Elongation factor Tu domain 2 JO40_RS06640 PF03764 Elongation factor G, domain IV JO40_RS06640 PF00009 Elongation factor Tu GTP binding domain JO40_RS06640 PF00679 Elongation factor G C-terminus JO40_RS06660 PF00892 EamA-like transporter family JO40_RS06670 PF01613 Flavin reductase like domain JO40_RS06680 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JO40_RS06680 PF04851 Type III restriction enzyme, res subunit JO40_RS06680 PF08463 EcoEI R protein C-terminal JO40_RS06680 PF00271 Helicase conserved C-terminal domain JO40_RS06685 PF02384 N-6 DNA Methylase JO40_RS06685 PF12161 HsdM N-terminal domain JO40_RS06690 PF03543 Yersinia/Haemophilus virulence surface antigen JO40_RS06690 PF05860 haemagglutination activity domain JO40_RS06690 PF13332 Hemagglutinin repeat JO40_RS06690 PF02661 Fic/DOC family JO40_RS06690 PF13018 Extended Signal Peptide of Type V secretion system JO40_RS06700 PF02899 Phage integrase, N-terminal SAM-like domain JO40_RS06700 PF00589 Phage integrase family JO40_RS06705 PF01420 Type I restriction modification DNA specificity domain JO40_RS06710 PF01420 Type I restriction modification DNA specificity domain JO40_RS06720 PF00465 Iron-containing alcohol dehydrogenase JO40_RS06750 PF02567 Phenazine biosynthesis-like protein JO40_RS06765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JO40_RS06765 PF03466 LysR substrate binding domain JO40_RS06770 PF00248 Aldo/keto reductase family JO40_RS06815 PF01381 Helix-turn-helix JO40_RS06820 PF01555 DNA methylase JO40_RS06825 PF04851 Type III restriction enzyme, res subunit JO40_RS06830 PF02525 Flavodoxin-like fold JO40_RS06845 PF02502 Ribose/Galactose Isomerase JO40_RS06850 PF00056 lactate/malate dehydrogenase, NAD binding domain JO40_RS06850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JO40_RS06855 PF01554 MatE JO40_RS06860 PF00391 PEP-utilising enzyme, mobile domain JO40_RS06860 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JO40_RS06865 PF00440 Bacterial regulatory proteins, tetR family JO40_RS06865 PF08359 YsiA-like protein, C-terminal region JO40_RS06880 PF04055 Radical SAM superfamily JO40_RS06880 PF00919 Uncharacterized protein family UPF0004 JO40_RS06880 PF18693 TRAM domain JO40_RS06900 PF02424 ApbE family JO40_RS06905 PF01252 Signal peptidase (SPase) II JO40_RS06910 PF13545 Crp-like helix-turn-helix domain JO40_RS06910 PF00027 Cyclic nucleotide-binding domain JO40_RS06925 PF05958 tRNA (Uracil-5-)-methyltransferase JO40_RS06945 PF02355 Protein export membrane protein JO40_RS06950 PF02355 Protein export membrane protein JO40_RS06955 PF02699 Preprotein translocase subunit JO40_RS06960 PF00436 Single-strand binding protein family JO40_RS06970 PF01259 SAICAR synthetase JO40_RS06975 PF00731 AIR carboxylase JO40_RS06985 PF01636 Phosphotransferase enzyme family JO40_RS07000 PF08543 Phosphomethylpyrimidine kinase JO40_RS07010 PF00005 ABC transporter JO40_RS07030 PF01175 Urocanase Rossmann-like domain JO40_RS07030 PF17392 Urocanase C-terminal domain JO40_RS07030 PF17391 Urocanase N-terminal domain JO40_RS07045 PF00300 Histidine phosphatase superfamily (branch 1) JO40_RS07050 PF02151 UvrB/uvrC motif JO40_RS07050 PF01541 GIY-YIG catalytic domain JO40_RS07050 PF08459 UvrC Helix-hairpin-helix N-terminal JO40_RS07055 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS07055 PF09820 Predicted AAA-ATPase JO40_RS07060 PF12390 Selenocysteine synthase N terminal JO40_RS07060 PF03841 L-seryl-tRNA selenium transferase JO40_RS07065 PF01613 Flavin reductase like domain JO40_RS07080 PF12704 MacB-like periplasmic core domain JO40_RS07080 PF00005 ABC transporter JO40_RS07080 PF02687 FtsX-like permease family JO40_RS07085 PF00152 tRNA synthetases class II (D, K and N) JO40_RS07105 PF08668 HDOD domain JO40_RS07110 PF02146 Sir2 family JO40_RS07120 PF01416 tRNA pseudouridine synthase JO40_RS07125 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) JO40_RS07135 PF01725 Ham1 family JO40_RS07140 PF02743 Cache domain JO40_RS07140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS07140 PF00672 HAMP domain JO40_RS07190 PF00005 ABC transporter JO40_RS07190 PF00664 ABC transporter transmembrane region JO40_RS07200 PF01136 Peptidase family U32 JO40_RS07200 PF16325 Peptidase family U32 C-terminal domain JO40_RS07205 PF03932 CutC family JO40_RS07230 PF03781 Sulfatase-modifying factor enzyme 1 JO40_RS07255 PF07075 Protein of unknown function (DUF1343) JO40_RS07275 PF00497 Bacterial extracellular solute-binding proteins, family 3 JO40_RS07280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JO40_RS07280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JO40_RS07285 PF02881 SRP54-type protein, helical bundle domain JO40_RS07285 PF00448 SRP54-type protein, GTPase domain JO40_RS07285 PF02978 Signal peptide binding domain JO40_RS07290 PF01258 Prokaryotic dksA/traR C4-type zinc finger JO40_RS07295 PF01176 Translation initiation factor 1A / IF-1 JO40_RS07300 PF01556 DnaJ C terminal domain JO40_RS07300 PF00684 DnaJ central domain JO40_RS07300 PF00226 DnaJ domain JO40_RS07305 PF00696 Amino acid kinase family JO40_RS07310 PF00588 SpoU rRNA Methylase family JO40_RS07325 PF00575 S1 RNA binding domain JO40_RS07330 PF00158 Sigma-54 interaction domain JO40_RS07330 PF00072 Response regulator receiver domain JO40_RS07330 PF02954 Bacterial regulatory protein, Fis family JO40_RS07350 PF00563 EAL domain JO40_RS07350 PF03707 Bacterial signalling protein N terminal repeat JO40_RS07350 PF00990 Diguanylate cyclase, GGDEF domain JO40_RS07355 PF04055 Radical SAM superfamily JO40_RS07380 PF01042 Endoribonuclease L-PSP JO40_RS07390 PF07685 CobB/CobQ-like glutamine amidotransferase domain JO40_RS07410 PF00005 ABC transporter JO40_RS07425 PF07730 Histidine kinase JO40_RS07430 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS07430 PF07724 AAA domain (Cdc48 subfamily) JO40_RS07430 PF17871 AAA lid domain JO40_RS07430 PF02861 Clp amino terminal domain, pathogenicity island component JO40_RS07430 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_RS07450 PF02698 DUF218 domain JO40_RS07460 PF09285 Elongation factor P, C-terminal JO40_RS07460 PF08207 Elongation factor P (EF-P) KOW-like domain JO40_RS07460 PF01132 Elongation factor P (EF-P) OB domain JO40_RS07475 PF13277 YmdB-like protein JO40_RS07485 PF11799 impB/mucB/samB family C-terminal domain JO40_RS07485 PF00817 impB/mucB/samB family JO40_RS07485 PF11798 IMS family HHH motif JO40_RS07495 PF00684 DnaJ central domain JO40_RS07495 PF00226 DnaJ domain JO40_RS07495 PF01556 DnaJ C terminal domain JO40_RS07505 PF07009 NusG domain II JO40_RS07510 PF01734 Patatin-like phospholipase JO40_RS07515 PF03009 Glycerophosphoryl diester phosphodiesterase family JO40_RS07520 PF04536 TPM domain JO40_RS07525 PF04011 LemA family JO40_RS07530 PF05746 DALR anticodon binding domain JO40_RS07530 PF00750 tRNA synthetases class I (R) JO40_RS07530 PF03485 Arginyl tRNA synthetase N terminal domain JO40_RS07535 PF00156 Phosphoribosyl transferase domain JO40_RS07540 PF04002 RadC-like JAB domain JO40_RS07545 PF07943 Penicillin-binding protein 5, C-terminal domain JO40_RS07545 PF00768 D-alanyl-D-alanine carboxypeptidase JO40_RS07555 PF01180 Dihydroorotate dehydrogenase JO40_RS07560 PF01226 Formate/nitrite transporter JO40_RS07565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JO40_RS07565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JO40_RS07570 PF00156 Phosphoribosyl transferase domain JO40_RS07580 PF00669 Bacterial flagellin N-terminal helical region JO40_RS07580 PF00700 Bacterial flagellin C-terminal helical region JO40_RS07585 PF00460 Flagella basal body rod protein JO40_RS07585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_RS07590 PF00460 Flagella basal body rod protein JO40_RS07590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_RS07595 PF10135 Rod binding protein JO40_RS07600 PF01139 tRNA-splicing ligase RtcB JO40_RS07655 PF03412 Peptidase C39 family JO40_RS07655 PF00005 ABC transporter JO40_RS07655 PF00664 ABC transporter transmembrane region JO40_RS07665 PF00005 ABC transporter JO40_RS07665 PF00664 ABC transporter transmembrane region JO40_RS07670 PF00664 ABC transporter transmembrane region JO40_RS07670 PF00005 ABC transporter JO40_RS07685 PF08361 MAATS-type transcriptional repressor, C-terminal region JO40_RS07685 PF00440 Bacterial regulatory proteins, tetR family JO40_RS07690 PF04954 Siderophore-interacting protein JO40_RS07690 PF00664 ABC transporter transmembrane region JO40_RS07690 PF08021 Siderophore-interacting FAD-binding domain JO40_RS07690 PF00005 ABC transporter JO40_RS07695 PF00664 ABC transporter transmembrane region JO40_RS07695 PF00005 ABC transporter JO40_RS07700 PF00005 ABC transporter JO40_RS07715 PF09820 Predicted AAA-ATPase JO40_RS07715 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS07735 PF07977 FabA-like domain JO40_RS07750 PF08245 Mur ligase middle domain JO40_RS07750 PF02875 Mur ligase family, glutamate ligase domain JO40_RS07750 PF01225 Mur ligase family, catalytic domain JO40_RS07775 PF01973 Protein of unknown function DUF115 JO40_RS07780 PF00005 ABC transporter JO40_RS07785 PF00005 ABC transporter JO40_RS07795 PF07687 Peptidase dimerisation domain JO40_RS07795 PF01546 Peptidase family M20/M25/M40 JO40_RS07805 PF01297 Zinc-uptake complex component A periplasmic JO40_RS07825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_RS07825 PF03129 Anticodon binding domain JO40_RS07825 PF04073 Aminoacyl-tRNA editing domain JO40_RS07830 PF10502 Signal peptidase, peptidase S26 JO40_RS07840 PF13407 Periplasmic binding protein domain JO40_RS07840 PF18610 Periplasmic binding protein domain JO40_RS07865 PF02547 Queuosine biosynthesis protein JO40_RS07870 PF12796 Ankyrin repeats (3 copies) JO40_RS07875 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JO40_RS07875 PF01871 AMMECR1 JO40_RS07880 PF09820 Predicted AAA-ATPase JO40_RS07880 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS07890 PF01202 Shikimate kinase JO40_RS07895 PF00390 Malic enzyme, N-terminal domain JO40_RS07895 PF03949 Malic enzyme, NAD binding domain JO40_RS07910 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS07915 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_RS07915 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS07920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS07920 PF00005 ABC transporter JO40_RS07925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS07925 PF00005 ABC transporter JO40_RS07930 PF00753 Metallo-beta-lactamase superfamily JO40_RS07930 PF01613 Flavin reductase like domain JO40_RS07940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JO40_RS07945 PF00398 Ribosomal RNA adenine dimethylase JO40_RS07955 PF00849 RNA pseudouridylate synthase JO40_RS07960 PF01479 S4 domain JO40_RS07960 PF00849 RNA pseudouridylate synthase JO40_RS07975 PF03755 YicC-like family, N-terminal region JO40_RS07975 PF08340 Domain of unknown function (DUF1732) JO40_RS07995 PF03129 Anticodon binding domain JO40_RS07995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JO40_RS07995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO40_RS08025 PF02401 LytB protein JO40_RS08045 PF02654 Cobalamin-5-phosphate synthase JO40_RS08065 PF05175 Methyltransferase small domain JO40_RS08070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JO40_RS08075 PF08534 Redoxin JO40_RS08100 PF02653 Branched-chain amino acid transport system / permease component JO40_RS08105 PF02653 Branched-chain amino acid transport system / permease component JO40_RS08105 PF11862 Domain of unknown function (DUF3382) JO40_RS08110 PF12399 Branched-chain amino acid ATP-binding cassette transporter JO40_RS08110 PF00005 ABC transporter JO40_RS08115 PF00005 ABC transporter JO40_RS08130 PF02733 Dak1 domain JO40_RS08135 PF02734 DAK2 domain JO40_RS08135 PF02733 Dak1 domain JO40_RS08145 PF01032 FecCD transport family JO40_RS08170 PF01509 TruB family pseudouridylate synthase (N terminal domain) JO40_RS08175 PF02033 Ribosome-binding factor A JO40_RS08180 PF04760 Translation initiation factor IF-2, N-terminal region JO40_RS08180 PF00009 Elongation factor Tu GTP binding domain JO40_RS08180 PF11987 Translation-initiation factor 2 JO40_RS08185 PF13184 NusA-like KH domain JO40_RS08185 PF08529 NusA N-terminal domain JO40_RS08185 PF00575 S1 RNA binding domain JO40_RS08190 PF17384 RimP C-terminal SH3 domain JO40_RS08190 PF02576 RimP N-terminal domain JO40_RS08195 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JO40_RS08195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JO40_RS08210 PF05191 Adenylate kinase, active site lid JO40_RS08215 PF01212 Beta-eliminating lyase JO40_RS08235 PF01740 STAS domain JO40_RS08275 PF02390 Putative methyltransferase JO40_RS08280 PF01264 Chorismate synthase JO40_RS08300 PF00118 TCP-1/cpn60 chaperonin family JO40_RS08315 PF10672 S-adenosylmethionine-dependent methyltransferase JO40_RS08320 PF06971 Putative DNA-binding protein N-terminus JO40_RS08320 PF02629 CoA binding domain JO40_RS08325 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JO40_RS08325 PF02779 Transketolase, pyrimidine binding domain JO40_RS08325 PF02780 Transketolase, C-terminal domain JO40_RS08330 PF02457 DisA bacterial checkpoint controller nucleotide-binding JO40_RS08340 PF01648 4'-phosphopantetheinyl transferase superfamily JO40_RS08345 PF03313 Serine dehydratase alpha chain JO40_RS08350 PF06832 Penicillin-Binding Protein C-terminus Family JO40_RS08350 PF00912 Transglycosylase JO40_RS08350 PF00905 Penicillin binding protein transpeptidase domain JO40_RS08355 PF00707 Translation initiation factor IF-3, C-terminal domain JO40_RS08355 PF05198 Translation initiation factor IF-3, N-terminal domain JO40_RS08360 PF01632 Ribosomal protein L35 JO40_RS08365 PF00453 Ribosomal protein L20 JO40_RS08375 PF05164 Cell division protein ZapA JO40_RS08380 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JO40_RS08390 PF01464 Transglycosylase SLT domain JO40_RS08390 PF01476 LysM domain JO40_RS08410 PF02073 Thermophilic metalloprotease (M29) JO40_RS08465 PF00343 Carbohydrate phosphorylase JO40_RS08475 PF00155 Aminotransferase class I and II JO40_RS08495 PF13537 Glutamine amidotransferase domain JO40_RS08495 PF00156 Phosphoribosyl transferase domain JO40_RS08505 PF01555 DNA methylase JO40_RS08525 PF04963 Sigma-54 factor, core binding domain JO40_RS08525 PF04552 Sigma-54, DNA binding domain JO40_RS08525 PF00309 Sigma-54 factor, Activator interacting domain (AID) JO40_RS08530 PF00753 Metallo-beta-lactamase superfamily JO40_RS08540 PF01370 NAD dependent epimerase/dehydratase family JO40_RS08545 PF02028 BCCT, betaine/carnitine/choline family transporter JO40_RS08550 PF12804 MobA-like NTP transferase domain JO40_RS08555 PF01235 Sodium:alanine symporter family JO40_RS08575 PF00488 MutS domain V JO40_RS08575 PF01713 Smr domain JO40_RS08605 PF01882 Protein of unknown function DUF58 JO40_RS08620 PF03471 Transporter associated domain JO40_RS08620 PF00571 CBS domain JO40_RS08625 PF02130 Uncharacterized protein family UPF0054 JO40_RS08630 PF07698 7TM receptor with intracellular HD hydrolase JO40_RS08630 PF07697 7TM-HD extracellular JO40_RS08630 PF01966 HD domain JO40_RS08635 PF02562 PhoH-like protein JO40_RS08650 PF00121 Triosephosphate isomerase JO40_RS08655 PF03033 Glycosyltransferase family 28 N-terminal domain JO40_RS08655 PF04101 Glycosyltransferase family 28 C-terminal domain JO40_RS08675 PF00753 Metallo-beta-lactamase superfamily JO40_RS08690 PF10415 Fumarase C C-terminus JO40_RS08690 PF00206 Lyase JO40_RS08695 PF00691 OmpA family JO40_RS08695 PF13488 Glycine zipper JO40_RS08705 PF06733 DEAD_2 JO40_RS08705 PF13307 Helicase C-terminal domain JO40_RS08735 PF00672 HAMP domain JO40_RS08735 PF00211 Adenylate and Guanylate cyclase catalytic domain JO40_RS08740 PF04773 FecR protein JO40_RS08775 PF02674 Colicin V production protein JO40_RS08780 PF09115 DNA polymerase III, delta subunit, C terminal JO40_RS08790 PF00158 Sigma-54 interaction domain JO40_RS08790 PF02954 Bacterial regulatory protein, Fis family JO40_RS08790 PF00072 Response regulator receiver domain JO40_RS08795 PF01728 FtsJ-like methyltransferase JO40_RS08805 PF17820 PDZ domain JO40_RS08805 PF13180 PDZ domain JO40_RS08810 PF00999 Sodium/hydrogen exchanger family JO40_RS08815 PF02690 Na+/Pi-cotransporter JO40_RS08860 PF00583 Acetyltransferase (GNAT) family JO40_RS08870 PF04055 Radical SAM superfamily JO40_RS08870 PF13186 Iron-sulfur cluster-binding domain JO40_RS08880 PF01638 HxlR-like helix-turn-helix JO40_RS08885 PF00037 4Fe-4S binding domain JO40_RS08895 PF00753 Metallo-beta-lactamase superfamily JO40_RS08895 PF12706 Beta-lactamase superfamily domain JO40_RS08900 PF08279 HTH domain JO40_RS08900 PF13280 WYL domain JO40_RS08915 PF00005 ABC transporter JO40_RS08925 PF02311 AraC-like ligand binding domain JO40_RS08925 PF12833 Helix-turn-helix domain JO40_RS08930 PF00664 ABC transporter transmembrane region JO40_RS08930 PF04954 Siderophore-interacting protein JO40_RS08930 PF00005 ABC transporter JO40_RS08930 PF08021 Siderophore-interacting FAD-binding domain JO40_RS08955 PF00005 ABC transporter JO40_RS09000 PF00271 Helicase conserved C-terminal domain JO40_RS09000 PF17757 UvrB interaction domain JO40_RS09000 PF02151 UvrB/uvrC motif JO40_RS09000 PF12344 Ultra-violet resistance protein B JO40_RS09000 PF04851 Type III restriction enzyme, res subunit JO40_RS09005 PF03853 YjeF-related protein N-terminus JO40_RS09005 PF01256 Carbohydrate kinase JO40_RS09010 PF00773 RNB domain JO40_RS09035 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JO40_RS09040 PF01467 Cytidylyltransferase-like JO40_RS09055 PF00664 ABC transporter transmembrane region JO40_RS09055 PF00005 ABC transporter JO40_RS09075 PF01991 ATP synthase (E/31 kDa) subunit JO40_RS09080 PF01022 Bacterial regulatory protein, arsR family JO40_RS09085 PF00403 Heavy-metal-associated domain JO40_RS09090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS09090 PF02743 Cache domain JO40_RS09090 PF00672 HAMP domain JO40_RS09095 PF00849 RNA pseudouridylate synthase JO40_RS09095 PF01479 S4 domain JO40_RS09110 PF13375 RnfC Barrel sandwich hybrid domain JO40_RS09110 PF10531 SLBB domain JO40_RS09110 PF13237 4Fe-4S dicluster domain JO40_RS09110 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JO40_RS09115 PF03116 NQR2, RnfD, RnfE family JO40_RS09145 PF10609 NUBPL iron-transfer P-loop NTPase JO40_RS09155 PF01790 Prolipoprotein diacylglyceryl transferase JO40_RS09160 PF02540 NAD synthase JO40_RS09175 PF16326 ABC transporter C-terminal domain JO40_RS09175 PF00005 ABC transporter JO40_RS09175 PF12848 ABC transporter JO40_RS09180 PF08239 Bacterial SH3 domain JO40_RS09195 PF01966 HD domain JO40_RS09220 PF00999 Sodium/hydrogen exchanger family JO40_RS09245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JO40_RS09245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JO40_RS09250 PF00266 Aminotransferase class-V JO40_RS09270 PF00005 ABC transporter JO40_RS09290 PF13847 Methyltransferase domain JO40_RS09305 PF02350 UDP-N-acetylglucosamine 2-epimerase JO40_RS09310 PF00535 Glycosyl transferase family 2 JO40_RS09320 PF00483 Nucleotidyl transferase JO40_RS09325 PF16363 GDP-mannose 4,6 dehydratase JO40_RS09330 PF01370 NAD dependent epimerase/dehydratase family JO40_RS09335 PF01370 NAD dependent epimerase/dehydratase family JO40_RS09350 PF00535 Glycosyl transferase family 2 JO40_RS09355 PF00535 Glycosyl transferase family 2 JO40_RS09365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JO40_RS09365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JO40_RS09365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JO40_RS09370 PF00535 Glycosyl transferase family 2 JO40_RS09380 PF05523 WxcM-like, C-terminal JO40_RS09405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JO40_RS09410 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) JO40_RS09435 PF02096 60Kd inner membrane protein JO40_RS09465 PF02096 60Kd inner membrane protein JO40_RS09465 PF14849 YidC periplasmic domain JO40_RS09475 PF00534 Glycosyl transferases group 1 JO40_RS09475 PF13439 Glycosyltransferase Family 4 JO40_RS09480 PF01370 NAD dependent epimerase/dehydratase family JO40_RS09485 PF00483 Nucleotidyl transferase JO40_RS09490 PF16363 GDP-mannose 4,6 dehydratase JO40_RS09495 PF13393 Histidyl-tRNA synthetase JO40_RS09505 PF10996 Beta-Casp domain JO40_RS09505 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JO40_RS09505 PF00753 Metallo-beta-lactamase superfamily JO40_RS09515 PF00005 ABC transporter JO40_RS09515 PF12848 ABC transporter JO40_RS09525 PF03572 Peptidase family S41 JO40_RS09525 PF13180 PDZ domain JO40_RS09580 PF08367 Peptidase M16C associated JO40_RS09580 PF00675 Insulinase (Peptidase family M16) JO40_RS09580 PF05193 Peptidase M16 inactive domain JO40_RS09585 PF02075 Crossover junction endodeoxyribonuclease RuvC JO40_RS09590 PF01330 RuvA N terminal domain JO40_RS09660 PF00005 ABC transporter JO40_RS09665 PF00005 ABC transporter JO40_RS09665 PF02687 FtsX-like permease family JO40_RS09665 PF12704 MacB-like periplasmic core domain JO40_RS09695 PF01934 Protein of unknown function DUF86 JO40_RS09800 PF01934 Protein of unknown function DUF86 JO40_RS09810 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JO40_RS09830 PF07650 KH domain JO40_RS09830 PF01926 50S ribosome-binding GTPase JO40_RS09835 PF04060 Putative Fe-S cluster JO40_RS09840 PF00009 Elongation factor Tu GTP binding domain JO40_RS09840 PF06421 GTP-binding protein LepA C-terminus JO40_RS09840 PF03144 Elongation factor Tu domain 2 JO40_RS09840 PF14492 Elongation Factor G, domain II JO40_RS09840 PF00679 Elongation factor G C-terminus JO40_RS09880 PF05525 Branched-chain amino acid transport protein JO40_RS09895 PF04055 Radical SAM superfamily JO40_RS09895 PF00919 Uncharacterized protein family UPF0004 JO40_RS09925 PF00829 Ribosomal prokaryotic L21 protein JO40_RS09935 PF01016 Ribosomal L27 protein JO40_RS09940 PF01018 GTP1/OBG JO40_RS09940 PF01926 50S ribosome-binding GTPase JO40_RS09945 PF01467 Cytidylyltransferase-like JO40_RS09960 PF02417 Chromate transporter JO40_RS09965 PF02417 Chromate transporter JO40_RS09970 PF00684 DnaJ central domain JO40_RS09970 PF01556 DnaJ C terminal domain JO40_RS09970 PF00226 DnaJ domain JO40_RS09980 PF03372 Endonuclease/Exonuclease/phosphatase family JO40_RS09990 PF00037 4Fe-4S binding domain JO40_RS10000 PF01551 Peptidase family M23 JO40_RS10000 PF04225 Opacity-associated protein A LysM-like domain JO40_RS10010 PF00912 Transglycosylase JO40_RS10010 PF17092 Penicillin-binding protein OB-like domain JO40_RS10010 PF00905 Penicillin binding protein transpeptidase domain JO40_RS10020 PF00501 AMP-binding enzyme JO40_RS10065 PF12627 Probable RNA and SrmB- binding site of polymerase A JO40_RS10065 PF12626 Polymerase A arginine-rich C-terminus JO40_RS10065 PF01743 Poly A polymerase head domain JO40_RS10095 PF01047 MarR family JO40_RS10100 PF00117 Glutamine amidotransferase class-I JO40_RS10100 PF01171 PP-loop family JO40_RS10100 PF00958 GMP synthase C terminal domain JO40_RS10115 PF00162 Phosphoglycerate kinase JO40_RS10120 PF01520 N-acetylmuramoyl-L-alanine amidase JO40_RS10130 PF04620 Flagellar filament outer layer protein Flaa JO40_RS10140 PF01649 Ribosomal protein S20 JO40_RS10160 PF00994 Probable molybdopterin binding domain JO40_RS10160 PF02464 Competence-damaged protein JO40_RS10160 PF18146 Damage-inducible protein CinA KH domain JO40_RS10190 PF00300 Histidine phosphatase superfamily (branch 1) JO40_RS10195 PF07364 Metallopeptidase family M81 JO40_RS10195 PF07171 MlrC C-terminus JO40_RS10200 PF01869 BadF/BadG/BcrA/BcrD ATPase family JO40_RS10220 PF00005 ABC transporter JO40_RS10235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JO40_RS10240 PF00156 Phosphoribosyl transferase domain JO40_RS10245 PF16886 ATPsynthase alpha/beta subunit N-term extension JO40_RS10245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_RS10245 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO40_RS10250 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO40_RS10250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_RS10255 PF01813 ATP synthase subunit D JO40_RS10270 PF01250 Ribosomal protein S6 JO40_RS10275 PF00436 Single-strand binding protein family JO40_RS10280 PF01084 Ribosomal protein S18 JO40_RS10285 PF01281 Ribosomal protein L9, N-terminal domain JO40_RS10285 PF03948 Ribosomal protein L9, C-terminal domain JO40_RS10295 PF07724 AAA domain (Cdc48 subfamily) JO40_RS10295 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_RS10295 PF06689 ClpX C4-type zinc finger JO40_RS10300 PF00574 Clp protease JO40_RS10305 PF05697 Bacterial trigger factor protein (TF) JO40_RS10305 PF05698 Bacterial trigger factor protein (TF) C-terminus JO40_RS10305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO40_RS10325 PF00155 Aminotransferase class I and II JO40_RS10335 PF01008 Initiation factor 2 subunit family JO40_RS10350 PF00691 OmpA family JO40_RS10355 PF03796 DnaB-like helicase C terminal domain JO40_RS10355 PF00772 DnaB-like helicase N terminal domain JO40_RS10365 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JO40_RS10365 PF01411 tRNA synthetases class II (A) JO40_RS10370 PF13145 PPIC-type PPIASE domain JO40_RS10375 PF01029 NusB family JO40_RS10390 PF00270 DEAD/DEAH box helicase JO40_RS10390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JO40_RS10390 PF00271 Helicase conserved C-terminal domain JO40_RS10390 PF04408 Helicase associated domain (HA2) JO40_RS10395 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS10395 PF09820 Predicted AAA-ATPase JO40_RS10405 PF00456 Transketolase, thiamine diphosphate binding domain JO40_RS10405 PF02779 Transketolase, pyrimidine binding domain JO40_RS10410 PF16363 GDP-mannose 4,6 dehydratase JO40_RS10415 PF01880 Desulfoferrodoxin JO40_RS10415 PF06397 Desulfoferrodoxin, N-terminal domain JO40_RS10455 PF02463 RecF/RecN/SMC N terminal domain JO40_RS10475 PF00877 NlpC/P60 family JO40_RS10475 PF01476 LysM domain JO40_RS10485 PF07475 HPr Serine kinase C-terminal domain JO40_RS10485 PF02603 HPr Serine kinase N terminus JO40_RS10490 PF00381 PTS HPr component phosphorylation site JO40_RS10500 PF01523 Putative modulator of DNA gyrase JO40_RS10515 PF13277 YmdB-like protein JO40_RS10525 PF00348 Polyprenyl synthetase JO40_RS10550 PF03692 Putative zinc- or iron-chelating domain JO40_RS10565 PF02618 YceG-like family JO40_RS10585 PF01351 Ribonuclease HII JO40_RS10590 PF03812 2-keto-3-deoxygluconate permease JO40_RS10595 PF17042 Nucleotide-binding C-terminal domain JO40_RS10595 PF07005 Sugar-binding N-terminal domain JO40_RS10600 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JO40_RS10605 PF08666 SAF domain JO40_RS10610 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JO40_RS10615 PF08220 DeoR-like helix-turn-helix domain JO40_RS10615 PF00455 DeoR C terminal sensor domain JO40_RS10620 PF01706 FliG C-terminal domain JO40_RS10620 PF14841 FliG middle domain JO40_RS10620 PF14842 FliG N-terminal domain JO40_RS10645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JO40_RS10660 PF13186 Iron-sulfur cluster-binding domain JO40_RS10675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JO40_RS10675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JO40_RS10680 PF00465 Iron-containing alcohol dehydrogenase JO40_RS10685 PF05491 RuvB C-terminal winged helix domain JO40_RS10685 PF17864 RuvB AAA lid domain JO40_RS10685 PF05496 Holliday junction DNA helicase RuvB P-loop domain JO40_RS10690 PF00392 Bacterial regulatory proteins, gntR family JO40_RS10695 PF01043 SecA preprotein cross-linking domain JO40_RS10695 PF07517 SecA DEAD-like domain JO40_RS10695 PF07516 SecA Wing and Scaffold domain JO40_RS10695 PF02810 SEC-C motif JO40_RS10700 PF00551 Formyl transferase JO40_RS10705 PF02142 MGS-like domain JO40_RS10705 PF01808 AICARFT/IMPCHase bienzyme JO40_RS10710 PF02575 YbaB/EbfC DNA-binding family JO40_RS10715 PF13662 Toprim domain JO40_RS10715 PF02132 RecR protein JO40_RS10720 PF00365 Phosphofructokinase JO40_RS10725 PF00919 Uncharacterized protein family UPF0004 JO40_RS10725 PF04055 Radical SAM superfamily JO40_RS10725 PF01938 TRAM domain JO40_RS10760 PF08323 Starch synthase catalytic domain JO40_RS10760 PF00534 Glycosyl transferases group 1 JO40_RS10785 PF00152 tRNA synthetases class II (D, K and N) JO40_RS10785 PF01336 OB-fold nucleic acid binding domain JO40_RS10785 PF02938 GAD domain JO40_RS10790 PF00579 tRNA synthetases class I (W and Y) JO40_RS10795 PF01584 CheW-like domain JO40_RS10805 PF01513 ATP-NAD kinase JO40_RS10810 PF12848 ABC transporter JO40_RS10810 PF00005 ABC transporter JO40_RS10815 PF02906 Iron only hydrogenase large subunit, C-terminal domain JO40_RS10815 PF02256 Iron hydrogenase small subunit JO40_RS10815 PF00037 4Fe-4S binding domain JO40_RS10815 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JO40_RS10820 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JO40_RS10820 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS10825 PF01888 CbiD JO40_RS10830 PF00293 NUDIX domain JO40_RS10885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JO40_RS10885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JO40_RS10895 PF02347 Glycine cleavage system P-protein JO40_RS10900 PF02347 Glycine cleavage system P-protein JO40_RS10905 PF01597 Glycine cleavage H-protein JO40_RS10910 PF08669 Glycine cleavage T-protein C-terminal barrel domain JO40_RS10910 PF01571 Aminomethyltransferase folate-binding domain JO40_RS10920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JO40_RS10920 PF07992 Pyridine nucleotide-disulphide oxidoreductase JO40_RS10925 PF01555 DNA methylase JO40_RS10925 PF18273 Type III R-M EcoP15I C-terminal domain JO40_RS10930 PF04851 Type III restriction enzyme, res subunit JO40_RS10930 PF08774 VRR-NUC domain JO40_RS10940 PF04223 Citrate lyase, alpha subunit (CitF) JO40_RS10945 PF03328 HpcH/HpaI aldolase/citrate lyase family JO40_RS10950 PF06857 Malonate decarboxylase delta subunit (MdcD) JO40_RS10955 PF01612 3'-5' exonuclease JO40_RS10955 PF00476 DNA polymerase family A JO40_RS10955 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JO40_RS10955 PF01367 5'-3' exonuclease, C-terminal SAM fold JO40_RS10960 PF01121 Dephospho-CoA kinase JO40_RS10970 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JO40_RS10970 PF01488 Shikimate / quinate 5-dehydrogenase JO40_RS10970 PF08501 Shikimate dehydrogenase substrate binding domain JO40_RS10975 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JO40_RS10985 PF03793 PASTA domain JO40_RS10990 PF02911 Formyl transferase, C-terminal domain JO40_RS10990 PF00551 Formyl transferase JO40_RS10995 PF01327 Polypeptide deformylase JO40_RS11005 PF00005 ABC transporter JO40_RS11010 PF02632 BioY family JO40_RS11100 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JO40_RS11105 PF08218 Citrate lyase ligase C-terminal domain JO40_RS11110 PF05681 Fumarate hydratase (Fumerase) JO40_RS11110 PF05683 Fumarase C-terminus JO40_RS11115 PF05681 Fumarate hydratase (Fumerase) JO40_RS11135 PF00005 ABC transporter JO40_RS11140 PF02687 FtsX-like permease family JO40_RS11140 PF12704 MacB-like periplasmic core domain JO40_RS11160 PF10634 Fe2+ transport protein JO40_RS11165 PF03239 Iron permease FTR1 family JO40_RS11170 PF00005 ABC transporter JO40_RS11170 PF00664 ABC transporter transmembrane region JO40_RS11175 PF00005 ABC transporter JO40_RS11185 PF03315 Serine dehydratase beta chain JO40_RS11185 PF01842 ACT domain JO40_RS11190 PF03313 Serine dehydratase alpha chain JO40_RS11200 PF01197 Ribosomal protein L31 JO40_RS11205 PF07498 Rho termination factor, N-terminal domain JO40_RS11205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_RS11205 PF07497 Rho termination factor, RNA-binding domain JO40_RS11220 PF00391 PEP-utilising enzyme, mobile domain JO40_RS11220 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JO40_RS11220 PF02896 PEP-utilising enzyme, TIM barrel domain JO40_RS11230 PF10397 Adenylosuccinate lyase C-terminus JO40_RS11230 PF00206 Lyase JO40_RS11250 PF06470 SMC proteins Flexible Hinge Domain JO40_RS11250 PF02463 RecF/RecN/SMC N terminal domain JO40_RS11260 PF00072 Response regulator receiver domain JO40_RS11270 PF01584 CheW-like domain JO40_RS11275 PF01584 CheW-like domain JO40_RS11275 PF02895 Signal transducing histidine kinase, homodimeric domain JO40_RS11275 PF01627 Hpt domain JO40_RS11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JO40_RS11275 PF07194 P2 response regulator binding domain JO40_RS11290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JO40_RS11290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JO40_RS11295 PF01709 Transcriptional regulator JO40_RS11320 PF00557 Metallopeptidase family M24 JO40_RS11320 PF01321 Creatinase/Prolidase N-terminal domain JO40_RS11345 PF00669 Bacterial flagellin N-terminal helical region JO40_RS11345 PF00700 Bacterial flagellin C-terminal helical region JO40_RS11350 PF00700 Bacterial flagellin C-terminal helical region JO40_RS11350 PF00669 Bacterial flagellin N-terminal helical region JO40_RS11360 PF02465 Flagellar hook-associated protein 2 N-terminus JO40_RS11360 PF07195 Flagellar hook-associated protein 2 C-terminus JO40_RS11375 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JO40_RS11385 PF01966 HD domain JO40_RS11385 PF00672 HAMP domain JO40_RS11390 PF06969 HemN C-terminal domain JO40_RS11390 PF04055 Radical SAM superfamily JO40_RS11395 PF10502 Signal peptidase, peptidase S26 JO40_RS11415 PF03062 MBOAT, membrane-bound O-acyltransferase family JO40_RS11430 PF01145 SPFH domain / Band 7 family JO40_RS11440 PF03477 ATP cone domain JO40_RS11470 PF01205 Uncharacterized protein family UPF0029 JO40_RS11470 PF09186 Domain of unknown function (DUF1949) JO40_RS11500 PF00905 Penicillin binding protein transpeptidase domain JO40_RS11500 PF03717 Penicillin-binding Protein dimerisation domain JO40_RS11510 PF05872 Bacterial protein of unknown function (DUF853) JO40_RS11515 PF01555 DNA methylase JO40_RS11525 PF01300 Telomere recombination JO40_RS11545 PF01973 Protein of unknown function DUF115 JO40_RS11570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JO40_RS11575 PF16874 Glycosyl hydrolase family 36 C-terminal domain JO40_RS11575 PF16875 Glycosyl hydrolase family 36 N-terminal domain JO40_RS11590 PF03193 RsgA GTPase JO40_RS11595 PF01177 Asp/Glu/Hydantoin racemase JO40_RS11615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JO40_RS11630 PF08264 Anticodon-binding domain of tRNA JO40_RS11630 PF00133 tRNA synthetases class I (I, L, M and V) JO40_RS11630 PF10458 Valyl tRNA synthetase tRNA binding arm JO40_RS11635 PF00860 Permease family JO40_RS11645 PF01263 Aldose 1-epimerase JO40_RS11660 PF01098 Cell cycle protein JO40_RS11665 PF00905 Penicillin binding protein transpeptidase domain JO40_RS11665 PF03717 Penicillin-binding Protein dimerisation domain JO40_RS11695 PF00140 Sigma-70 factor, region 1.2 JO40_RS11695 PF04542 Sigma-70 region 2 JO40_RS11695 PF04539 Sigma-70 region 3 JO40_RS11695 PF03979 Sigma-70 factor, region 1.1 JO40_RS11695 PF04545 Sigma-70, region 4 JO40_RS11700 PF01807 CHC2 zinc finger JO40_RS11700 PF08275 DNA primase catalytic core, N-terminal domain JO40_RS11705 PF01078 Magnesium chelatase, subunit ChlI JO40_RS11705 PF13335 Magnesium chelatase, subunit ChlI C-terminal JO40_RS11720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JO40_RS11720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JO40_RS11720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JO40_RS11720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JO40_RS11725 PF00929 Exonuclease JO40_RS11730 PF00005 ABC transporter JO40_RS11735 PF01432 Peptidase family M3 JO40_RS11735 PF08439 Oligopeptidase F JO40_RS11745 PF00176 SNF2 family N-terminal domain JO40_RS11745 PF18337 RapA N-terminal Tudor like domain JO40_RS11745 PF12137 RNA polymerase recycling family C-terminal JO40_RS11745 PF18339 RapA N-terminal Tudor like domain 1 JO40_RS11745 PF00271 Helicase conserved C-terminal domain JO40_RS11765 PF00239 Resolvase, N terminal domain JO40_RS11765 PF02796 Helix-turn-helix domain of resolvase JO40_RS11780 PF00664 ABC transporter transmembrane region JO40_RS11780 PF00005 ABC transporter JO40_RS11780 PF04954 Siderophore-interacting protein JO40_RS11780 PF08021 Siderophore-interacting FAD-binding domain JO40_RS11790 PF00664 ABC transporter transmembrane region JO40_RS11790 PF00005 ABC transporter JO40_RS12075 PF18807 Tripartite Tc toxins repeat JO40_RS12075 PF05785 Rho-activating domain of cytotoxic necrotizing factor JO40_RS12130 PF00691 OmpA family JO40_RS12135 PF01026 TatD related DNase JO40_RS12145 PF03330 Lytic transglycolase JO40_RS12155 PF13439 Glycosyltransferase Family 4 JO40_RS12155 PF00534 Glycosyl transferases group 1 JO40_RS12160 PF00483 Nucleotidyl transferase JO40_RS12165 PF07724 AAA domain (Cdc48 subfamily) JO40_RS12165 PF17871 AAA lid domain JO40_RS12165 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS12165 PF10431 C-terminal, D2-small domain, of ClpB protein JO40_RS12165 PF02861 Clp amino terminal domain, pathogenicity island component JO40_RS12170 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain JO40_RS12175 PF02151 UvrB/uvrC motif JO40_RS12185 PF00005 ABC transporter JO40_RS12190 PF02687 FtsX-like permease family JO40_RS12190 PF12704 MacB-like periplasmic core domain JO40_RS12200 PF02881 SRP54-type protein, helical bundle domain JO40_RS12200 PF00448 SRP54-type protein, GTPase domain JO40_RS12215 PF00472 RF-1 domain JO40_RS12215 PF03462 PCRF domain JO40_RS12250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JO40_RS12250 PF02769 AIR synthase related protein, C-terminal domain JO40_RS12250 PF00586 AIR synthase related protein, N-terminal domain JO40_RS12255 PF04260 Protein of unknown function (DUF436) JO40_RS12265 PF08011 PD-(D/E)XK nuclease superfamily JO40_RS12265 PF09820 Predicted AAA-ATPase JO40_RS12270 PF02256 Iron hydrogenase small subunit JO40_RS12270 PF02906 Iron only hydrogenase large subunit, C-terminal domain JO40_RS12270 PF12838 4Fe-4S dicluster domain JO40_RS12290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS12290 PF00005 ABC transporter JO40_RS12295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JO40_RS12295 PF00005 ABC transporter JO40_RS12310 PF17726 Dam-replacing HTH domain JO40_RS12310 PF06044 Dam-replacing family JO40_RS12315 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JO40_RS12315 PF02844 Phosphoribosylglycinamide synthetase, N domain JO40_RS12315 PF02843 Phosphoribosylglycinamide synthetase, C domain JO40_RS12320 PF00586 AIR synthase related protein, N-terminal domain JO40_RS12320 PF02769 AIR synthase related protein, C-terminal domain JO40_RS12325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JO40_RS12325 PF00672 HAMP domain JO40_RS12325 PF02743 Cache domain JO40_RS12330 PF04551 GcpE protein JO40_RS12340 PF17820 PDZ domain JO40_RS12340 PF13180 PDZ domain JO40_RS12350 PF01171 PP-loop family JO40_RS12355 PF01386 Ribosomal L25p family JO40_RS12355 PF14693 Ribosomal protein TL5, C-terminal domain JO40_RS12365 PF04026 SpoVG JO40_RS12370 PF08544 GHMP kinases C terminal JO40_RS12370 PF00288 GHMP kinases N terminal domain JO40_RS12375 PF03484 tRNA synthetase B5 domain JO40_RS12375 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JO40_RS12430 PF07581 The GLUG motif JO40_RS12430 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) JO40_RS12460 PF00163 Ribosomal protein S4/S9 N-terminal domain JO40_RS12460 PF01479 S4 domain JO40_RS12490 PF02653 Branched-chain amino acid transport system / permease component JO40_RS12495 PF02653 Branched-chain amino acid transport system / permease component JO40_RS12500 PF00005 ABC transporter JO40_RS12505 PF02608 ABC transporter substrate-binding protein PnrA-like JO40_RS12510 PF05343 M42 glutamyl aminopeptidase JO40_RS12515 PF01820 D-ala D-ala ligase N-terminus JO40_RS12515 PF07478 D-ala D-ala ligase C-terminus JO40_RS12525 PF02446 4-alpha-glucanotransferase JO40_RS12530 PF00574 Clp protease JO40_RS12535 PF03186 CobD/Cbib protein JO40_RS12545 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JO40_RS12555 PF14804 Jag N-terminus JO40_RS12555 PF01424 R3H domain JO40_RS12560 PF02096 60Kd inner membrane protein JO40_RS12560 PF14849 YidC periplasmic domain JO40_RS12565 PF01809 Putative membrane protein insertion efficiency factor JO40_RS12570 PF00825 Ribonuclease P JO40_RS12575 PF00468 Ribosomal protein L34 JO40_RS12580 PF10282 Lactonase, 7-bladed beta-propeller JO40_RS12585 PF01297 Zinc-uptake complex component A periplasmic JO40_RS12590 PF00005 ABC transporter JO40_RS12595 PF00950 ABC 3 transport family JO40_RS12610 PF00933 Glycosyl hydrolase family 3 N terminal domain JO40_RS12610 PF01915 Glycosyl hydrolase family 3 C-terminal domain JO40_RS12625 PF02874 ATP synthase alpha/beta family, beta-barrel domain JO40_RS12625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JO40_RS12625 PF18269 T3SS EscN ATPase C-terminal domain JO40_RS12630 PF02108 Flagellar assembly protein FliH JO40_RS12635 PF14842 FliG N-terminal domain JO40_RS12635 PF14841 FliG middle domain JO40_RS12635 PF01706 FliG C-terminal domain JO40_RS12640 PF01514 Secretory protein of YscJ/FliF family JO40_RS12640 PF08345 Flagellar M-ring protein C-terminal JO40_RS12645 PF02049 Flagellar hook-basal body complex protein FliE JO40_RS12650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JO40_RS12650 PF00460 Flagella basal body rod protein JO40_RS12655 PF00460 Flagella basal body rod protein JO40_RS12660 PF07724 AAA domain (Cdc48 subfamily) JO40_RS12660 PF00004 ATPase family associated with various cellular activities (AAA) JO40_RS12665 PF00227 Proteasome subunit JO40_RS12670 PF00589 Phage integrase family JO40_RS12670 PF02899 Phage integrase, N-terminal SAM-like domain JO40_RS12675 PF01131 DNA topoisomerase JO40_RS12675 PF01396 Topoisomerase DNA binding C4 zinc finger JO40_RS12675 PF01751 Toprim domain JO40_RS12680 PF17782 DprA winged helix domain JO40_RS12680 PF02481 DNA recombination-mediator protein A JO40_RS12690 PF00589 Phage integrase family JO40_RS12690 PF02899 Phage integrase, N-terminal SAM-like domain JO40_RS12695 PF00091 Tubulin/FtsZ family, GTPase domain JO40_RS12695 PF12327 FtsZ family, C-terminal domain JO40_RS12700 PF02491 SHS2 domain inserted in FTSA JO40_RS12710 PF01098 Cell cycle protein JO40_RS12715 PF02875 Mur ligase family, glutamate ligase domain JO40_RS12715 PF01225 Mur ligase family, catalytic domain JO40_RS12715 PF08245 Mur ligase middle domain JO40_RS12725 PF01795 MraW methylase family JO40_RS12730 PF02381 MraZ protein, putative antitoxin-like JO40_RS12735 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JO40_RS12735 PF00326 Prolyl oligopeptidase family JO40_RS12770 PF02233 NAD(P) transhydrogenase beta subunit JO40_RS12805 PF00005 ABC transporter JO40_RS12805 PF00664 ABC transporter transmembrane region JO40_RS12820 PF00528 Binding-protein-dependent transport system inner membrane component JO40_RS12820 PF12911 N-terminal TM domain of oligopeptide transport permease C JO40_RS12845 PF00664 ABC transporter transmembrane region JO40_RS12845 PF00005 ABC transporter JO40_RS12845 PF03412 Peptidase C39 family JO40_RS12850 PF03412 Peptidase C39 family JO40_RS12850 PF00005 ABC transporter JO40_RS12850 PF00664 ABC transporter transmembrane region JO40_RS12855 PF07728 AAA domain (dynein-related subfamily) JO40_RS12855 PF12102 Domain of unknown function (DUF3578) JO40_RS12870 PF01420 Type I restriction modification DNA specificity domain JO40_RS12880 PF02368 Bacterial Ig-like domain (group 2) JO40_RS12890 PF13575 Domain of unknown function (DUF4135) JO40_RS12890 PF05147 Lanthionine synthetase C-like protein