locus-tag class description CQ11_RS00025 PF13344 Haloacid dehalogenase-like hydrolase CQ11_RS00025 PF18407 GCN5-related N-acetyltransferase like domain CQ11_RS00030 PF01728 FtsJ-like methyltransferase CQ11_RS00030 PF01479 S4 domain CQ11_RS00035 PF01513 ATP-NAD kinase CQ11_RS00040 PF02463 RecF/RecN/SMC N terminal domain CQ11_RS00055 PF03023 Lipid II flippase MurJ CQ11_RS00070 PF01458 Uncharacterized protein family (UPF0051) CQ11_RS00075 PF01458 Uncharacterized protein family (UPF0051) CQ11_RS00080 PF00355 Rieske [2Fe-2S] domain CQ11_RS00085 PF00005 ABC transporter CQ11_RS00090 PF00266 Aminotransferase class-V CQ11_RS00100 PF01883 Iron-sulfur cluster assembly protein CQ11_RS00105 PF00581 Rhodanese-like domain CQ11_RS00110 PF12848 ABC transporter CQ11_RS00110 PF00005 ABC transporter CQ11_RS00115 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_RS00135 PF00005 ABC transporter CQ11_RS00140 PF00483 Nucleotidyl transferase CQ11_RS00145 PF13439 Glycosyltransferase Family 4 CQ11_RS00145 PF00534 Glycosyl transferases group 1 CQ11_RS00150 PF00005 ABC transporter CQ11_RS00160 PF01145 SPFH domain / Band 7 family CQ11_RS00165 PF00588 SpoU rRNA Methylase family CQ11_RS00180 PF00588 SpoU rRNA Methylase family CQ11_RS00185 PF01161 Phosphatidylethanolamine-binding protein CQ11_RS00200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQ11_RS00200 PF14579 Helix-hairpin-helix motif CQ11_RS00200 PF01336 OB-fold nucleic acid binding domain CQ11_RS00200 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQ11_RS00200 PF02811 PHP domain CQ11_RS00220 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CQ11_RS00220 PF01488 Shikimate / quinate 5-dehydrogenase CQ11_RS00220 PF08501 Shikimate dehydrogenase substrate binding domain CQ11_RS00225 PF00958 GMP synthase C terminal domain CQ11_RS00225 PF02540 NAD synthase CQ11_RS00225 PF00117 Glutamine amidotransferase class-I CQ11_RS00230 PF04107 Glutamate-cysteine ligase family 2(GCS2) CQ11_RS00235 PF01546 Peptidase family M20/M25/M40 CQ11_RS00235 PF07687 Peptidase dimerisation domain CQ11_RS00250 PF02673 Bacitracin resistance protein BacA CQ11_RS00255 PF13419 Haloacid dehalogenase-like hydrolase CQ11_RS00265 PF08704 tRNA methyltransferase complex GCD14 subunit CQ11_RS00270 PF16450 Proteasomal ATPase OB C-terminal domain CQ11_RS00270 PF17758 Proteasomal ATPase OB N-terminal domain CQ11_RS00270 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_RS00275 PF03136 Pup-ligase protein CQ11_RS00280 PF05639 Pup-like protein CQ11_RS00285 PF03136 Pup-ligase protein CQ11_RS00300 PF00977 Histidine biosynthesis protein CQ11_RS00305 PF01502 Phosphoribosyl-AMP cyclohydrolase CQ11_RS00310 PF00218 Indole-3-glycerol phosphate synthase CQ11_RS00315 PF01790 Prolipoprotein diacylglyceryl transferase CQ11_RS00320 PF00224 Pyruvate kinase, barrel domain CQ11_RS00320 PF02887 Pyruvate kinase, alpha/beta domain CQ11_RS00330 PF03861 ANTAR domain CQ11_RS00330 PF00072 Response regulator receiver domain CQ11_RS00340 PF00476 DNA polymerase family A CQ11_RS00340 PF01367 5'-3' exonuclease, C-terminal SAM fold CQ11_RS00340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CQ11_RS00345 PF00575 S1 RNA binding domain CQ11_RS00360 PF00005 ABC transporter CQ11_RS00365 PF01470 Pyroglutamyl peptidase CQ11_RS00375 PF00271 Helicase conserved C-terminal domain CQ11_RS00375 PF17757 UvrB interaction domain CQ11_RS00375 PF12344 Ultra-violet resistance protein B CQ11_RS00375 PF02151 UvrB/uvrC motif CQ11_RS00375 PF04851 Type III restriction enzyme, res subunit CQ11_RS00380 PF03741 Integral membrane protein TerC family CQ11_RS00385 PF13593 SBF-like CPA transporter family (DUF4137) CQ11_RS00395 PF00005 ABC transporter CQ11_RS00395 PF17755 UvrA DNA-binding domain CQ11_RS00395 PF17760 UvrA interaction domain CQ11_RS00400 PF01541 GIY-YIG catalytic domain CQ11_RS00400 PF02151 UvrB/uvrC motif CQ11_RS00400 PF08459 UvrC Helix-hairpin-helix N-terminal CQ11_RS00405 PF03668 P-loop ATPase protein family CQ11_RS00410 PF01933 Uncharacterised protein family UPF0052 CQ11_RS00415 PF02650 WhiA C-terminal HTH domain CQ11_RS00415 PF14527 WhiA LAGLIDADG-like domain CQ11_RS00415 PF10298 WhiA N-terminal LAGLIDADG-like domain CQ11_RS00420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CQ11_RS00420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQ11_RS00425 PF00162 Phosphoglycerate kinase CQ11_RS00430 PF00121 Triosephosphate isomerase CQ11_RS00435 PF03840 Preprotein translocase SecG subunit CQ11_RS00445 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CQ11_RS00445 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CQ11_RS00450 PF00923 Transaldolase/Fructose-6-phosphate aldolase CQ11_RS00455 PF02780 Transketolase, C-terminal domain CQ11_RS00455 PF02779 Transketolase, pyrimidine binding domain CQ11_RS00455 PF00456 Transketolase, thiamine diphosphate binding domain CQ11_RS00460 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_RS00460 PF00589 Phage integrase family CQ11_RS00465 PF13614 AAA domain CQ11_RS00470 PF02616 Segregation and condensation protein ScpA CQ11_RS00475 PF04079 Segregation and condensation complex subunit ScpB CQ11_RS00480 PF00849 RNA pseudouridylate synthase CQ11_RS00480 PF01479 S4 domain CQ11_RS00485 PF02153 Prephenate dehydrogenase CQ11_RS00490 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CQ11_RS00490 PF01926 50S ribosome-binding GTPase CQ11_RS00495 PF00365 Phosphofructokinase CQ11_RS00505 PF11838 ERAP1-like C-terminal domain CQ11_RS00505 PF01433 Peptidase family M1 domain CQ11_RS00510 PF00498 FHA domain CQ11_RS00520 PF13411 MerR HTH family regulatory protein CQ11_RS00530 PF13397 RNA polymerase-binding protein CQ11_RS00535 PF00535 Glycosyl transferase family 2 CQ11_RS00540 PF00795 Carbon-nitrogen hydrolase CQ11_RS00540 PF00535 Glycosyl transferase family 2 CQ11_RS00545 PF08148 DSHCT (NUC185) domain CQ11_RS00545 PF00270 DEAD/DEAH box helicase CQ11_RS00545 PF00271 Helicase conserved C-terminal domain CQ11_RS00575 PF01634 ATP phosphoribosyltransferase CQ11_RS00575 PF08029 HisG, C-terminal domain CQ11_RS00580 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CQ11_RS00585 PF09084 NMT1/THI5 like CQ11_RS00590 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS00595 PF00834 Ribulose-phosphate 3 epimerase family CQ11_RS00600 PF01029 NusB family CQ11_RS00600 PF01189 16S rRNA methyltransferase RsmB/F CQ11_RS00605 PF02911 Formyl transferase, C-terminal domain CQ11_RS00605 PF00551 Formyl transferase CQ11_RS00610 PF17764 3′ DNA-binding domain (3′BD) CQ11_RS00615 PF02773 S-adenosylmethionine synthetase, C-terminal domain CQ11_RS00615 PF02772 S-adenosylmethionine synthetase, central domain CQ11_RS00615 PF00438 S-adenosylmethionine synthetase, N-terminal domain CQ11_RS00620 PF02441 Flavoprotein CQ11_RS00620 PF04127 DNA / pantothenate metabolism flavoprotein CQ11_RS00625 PF01192 RNA polymerase Rpb6 CQ11_RS00630 PF00625 Guanylate kinase CQ11_RS00640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQ11_RS00640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CQ11_RS00640 PF02142 MGS-like domain CQ11_RS00645 PF00117 Glutamine amidotransferase class-I CQ11_RS00645 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CQ11_RS00650 PF01029 NusB family CQ11_RS00655 PF01132 Elongation factor P (EF-P) OB domain CQ11_RS00655 PF08207 Elongation factor P (EF-P) KOW-like domain CQ11_RS00655 PF09285 Elongation factor P, C-terminal CQ11_RS00660 PF00403 Heavy-metal-associated domain CQ11_RS00665 PF01202 Shikimate kinase CQ11_RS00670 PF01761 3-dehydroquinate synthase CQ11_RS00670 PF01202 Shikimate kinase CQ11_RS00675 PF01264 Chorismate synthase CQ11_RS00695 PF03652 Holliday junction resolvase CQ11_RS00700 PF01411 tRNA synthetases class II (A) CQ11_RS00700 PF02272 DHHA1 domain CQ11_RS00700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_RS00710 PF00163 Ribosomal protein S4/S9 N-terminal domain CQ11_RS00710 PF01479 S4 domain CQ11_RS00715 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_RS00715 PF16193 AAA C-terminal domain CQ11_RS00715 PF12002 MgsA AAA+ ATPase C terminal CQ11_RS00720 PF03176 MMPL family CQ11_RS00735 PF01336 OB-fold nucleic acid binding domain CQ11_RS00735 PF00152 tRNA synthetases class II (D, K and N) CQ11_RS00735 PF02938 GAD domain CQ11_RS00745 PF00270 DEAD/DEAH box helicase CQ11_RS00745 PF00271 Helicase conserved C-terminal domain CQ11_RS00745 PF03880 DbpA RNA binding domain CQ11_RS00755 PF01926 50S ribosome-binding GTPase CQ11_RS00755 PF07650 KH domain CQ11_RS00760 PF07650 KH domain CQ11_RS00760 PF01926 50S ribosome-binding GTPase CQ11_RS00765 PF03129 Anticodon binding domain CQ11_RS00765 PF13393 Histidyl-tRNA synthetase CQ11_RS00770 PF00753 Metallo-beta-lactamase superfamily CQ11_RS00775 PF03993 Domain of Unknown Function (DUF349) CQ11_RS00785 PF02824 TGS domain CQ11_RS00785 PF13291 ACT domain CQ11_RS00785 PF04607 Region found in RelA / SpoT proteins CQ11_RS00790 PF00156 Phosphoribosyl transferase domain CQ11_RS00795 PF02355 Protein export membrane protein CQ11_RS00795 PF07549 SecD/SecF GG Motif CQ11_RS00800 PF02355 Protein export membrane protein CQ11_RS00800 PF07549 SecD/SecF GG Motif CQ11_RS00810 PF17864 RuvB AAA lid domain CQ11_RS00810 PF05491 RuvB C-terminal winged helix domain CQ11_RS00810 PF05496 Holliday junction DNA helicase RuvB P-loop domain CQ11_RS00815 PF01330 RuvA N terminal domain CQ11_RS00815 PF07499 RuvA, C-terminal domain CQ11_RS00820 PF02075 Crossover junction endodeoxyribonuclease RuvC CQ11_RS00825 PF01709 Transcriptional regulator CQ11_RS00830 PF00293 NUDIX domain CQ11_RS00840 PF13439 Glycosyltransferase Family 4 CQ11_RS00850 PF01066 CDP-alcohol phosphatidyltransferase CQ11_RS00855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_RS00855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_RS00855 PF03129 Anticodon binding domain CQ11_RS00860 PF03315 Serine dehydratase beta chain CQ11_RS00860 PF03313 Serine dehydratase alpha chain CQ11_RS00865 PF00072 Response regulator receiver domain CQ11_RS00865 PF00196 Bacterial regulatory proteins, luxR family CQ11_RS00905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_RS00905 PF00128 Alpha amylase, catalytic domain CQ11_RS00910 PF00128 Alpha amylase, catalytic domain CQ11_RS00915 PF00128 Alpha amylase, catalytic domain CQ11_RS00915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_RS00930 PF02780 Transketolase, C-terminal domain CQ11_RS00930 PF02779 Transketolase, pyrimidine binding domain CQ11_RS00930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CQ11_RS00940 PF00694 Aconitase C-terminal domain CQ11_RS00940 PF00330 Aconitase family (aconitate hydratase) CQ11_RS00945 PF05958 tRNA (Uracil-5-)-methyltransferase CQ11_RS00955 PF02080 TrkA-C domain CQ11_RS00955 PF02254 TrkA-N domain CQ11_RS00960 PF02254 TrkA-N domain CQ11_RS00960 PF02080 TrkA-C domain CQ11_RS01000 PF03989 DNA gyrase C-terminal domain, beta-propeller CQ11_RS01000 PF00521 DNA gyrase/topoisomerase IV, subunit A CQ11_RS01015 PF01751 Toprim domain CQ11_RS01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS01015 PF00204 DNA gyrase B CQ11_RS01015 PF00986 DNA gyrase B subunit, carboxyl terminus CQ11_RS01025 PF00929 Exonuclease CQ11_RS01025 PF04851 Type III restriction enzyme, res subunit CQ11_RS01025 PF13307 Helicase C-terminal domain CQ11_RS01030 PF04545 Sigma-70, region 4 CQ11_RS01030 PF04539 Sigma-70 region 3 CQ11_RS01030 PF04542 Sigma-70 region 2 CQ11_RS01030 PF00140 Sigma-70 factor, region 1.2 CQ11_RS01045 PF00348 Polyprenyl synthetase CQ11_RS01055 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CQ11_RS01055 PF01464 Transglycosylase SLT domain CQ11_RS01060 PF00069 Protein kinase domain CQ11_RS01060 PF03793 PASTA domain CQ11_RS01065 PF01474 Class-II DAHP synthetase family CQ11_RS01070 PF00365 Phosphofructokinase CQ11_RS01080 PF00929 Exonuclease CQ11_RS01080 PF01541 GIY-YIG catalytic domain CQ11_RS01090 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CQ11_RS01090 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CQ11_RS01100 PF01521 Iron-sulphur cluster biosynthesis CQ11_RS01110 PF07687 Peptidase dimerisation domain CQ11_RS01110 PF01546 Peptidase family M20/M25/M40 CQ11_RS01125 PF02789 Cytosol aminopeptidase family, N-terminal domain CQ11_RS01125 PF00883 Cytosol aminopeptidase family, catalytic domain CQ11_RS01135 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS01135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_RS01140 PF02817 e3 binding domain CQ11_RS01140 PF00364 Biotin-requiring enzyme CQ11_RS01140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CQ11_RS01160 PF00120 Glutamine synthetase, catalytic domain CQ11_RS01160 PF03951 Glutamine synthetase, beta-Grasp domain CQ11_RS01170 PF08335 GlnD PII-uridylyltransferase CQ11_RS01170 PF03710 Glutamate-ammonia ligase adenylyltransferase CQ11_RS01175 PF03951 Glutamine synthetase, beta-Grasp domain CQ11_RS01175 PF00120 Glutamine synthetase, catalytic domain CQ11_RS01185 PF00557 Metallopeptidase family M24 CQ11_RS01190 PF00480 ROK family CQ11_RS01205 PF01784 NIF3 (NGG1p interacting factor 3) CQ11_RS01210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CQ11_RS01215 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CQ11_RS01245 PF17831 Pyruvate dehydrogenase E1 component middle domain CQ11_RS01245 PF00456 Transketolase, thiamine diphosphate binding domain CQ11_RS01250 PF00005 ABC transporter CQ11_RS01250 PF00664 ABC transporter transmembrane region CQ11_RS01255 PF00005 ABC transporter CQ11_RS01255 PF00664 ABC transporter transmembrane region CQ11_RS01260 PF13419 Haloacid dehalogenase-like hydrolase CQ11_RS01265 PF01300 Telomere recombination CQ11_RS01285 PF08338 Domain of unknown function (DUF1731) CQ11_RS01285 PF01370 NAD dependent epimerase/dehydratase family CQ11_RS01290 PF01327 Polypeptide deformylase CQ11_RS01295 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_RS01295 PF00589 Phage integrase family CQ11_RS01430 PF00005 ABC transporter CQ11_RS01435 PF01032 FecCD transport family CQ11_RS01465 PF02416 mttA/Hcf106 family CQ11_RS01470 PF02416 mttA/Hcf106 family CQ11_RS01475 PF00902 Sec-independent protein translocase protein (TatC) CQ11_RS01485 PF08275 DNA primase catalytic core, N-terminal domain CQ11_RS01485 PF13662 Toprim domain CQ11_RS01485 PF08278 DNA primase DnaG DnaB-binding CQ11_RS01485 PF10410 DnaB-helicase binding domain of primase CQ11_RS01485 PF01807 CHC2 zinc finger CQ11_RS01490 PF13286 Phosphohydrolase-associated domain CQ11_RS01490 PF01966 HD domain CQ11_RS01500 PF01207 Dihydrouridine synthase (Dus) CQ11_RS01510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_RS01510 PF03129 Anticodon binding domain CQ11_RS01520 PF00005 ABC transporter CQ11_RS01525 PF00950 ABC 3 transport family CQ11_RS01530 PF01475 Ferric uptake regulator family CQ11_RS01545 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQ11_RS01545 PF02811 PHP domain CQ11_RS01545 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQ11_RS01545 PF14579 Helix-hairpin-helix motif CQ11_RS01555 PF00849 RNA pseudouridylate synthase CQ11_RS01560 PF01252 Signal peptidase (SPase) II CQ11_RS01575 PF04472 Cell division protein SepF CQ11_RS01580 PF02578 Multi-copper polyphenol oxidoreductase laccase CQ11_RS01585 PF12327 FtsZ family, C-terminal domain CQ11_RS01585 PF00091 Tubulin/FtsZ family, GTPase domain CQ11_RS01595 PF01225 Mur ligase family, catalytic domain CQ11_RS01595 PF08245 Mur ligase middle domain CQ11_RS01595 PF02875 Mur ligase family, glutamate ligase domain CQ11_RS01600 PF03033 Glycosyltransferase family 28 N-terminal domain CQ11_RS01600 PF04101 Glycosyltransferase family 28 C-terminal domain CQ11_RS01605 PF01098 Cell cycle protein CQ11_RS01610 PF08245 Mur ligase middle domain CQ11_RS01610 PF02875 Mur ligase family, glutamate ligase domain CQ11_RS01615 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CQ11_RS01615 PF00953 Glycosyl transferase family 4 CQ11_RS01620 PF01225 Mur ligase family, catalytic domain CQ11_RS01620 PF08245 Mur ligase middle domain CQ11_RS01620 PF02875 Mur ligase family, glutamate ligase domain CQ11_RS01625 PF08245 Mur ligase middle domain CQ11_RS01625 PF01225 Mur ligase family, catalytic domain CQ11_RS01625 PF02875 Mur ligase family, glutamate ligase domain CQ11_RS01630 PF03717 Penicillin-binding Protein dimerisation domain CQ11_RS01630 PF00905 Penicillin binding protein transpeptidase domain CQ11_RS01640 PF01795 MraW methylase family CQ11_RS01645 PF02381 MraZ protein, putative antitoxin-like CQ11_RS01655 PF11799 impB/mucB/samB family C-terminal domain CQ11_RS01655 PF00817 impB/mucB/samB family CQ11_RS01675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQ11_RS01675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQ11_RS01680 PF13193 AMP-binding enzyme C-terminal domain CQ11_RS01680 PF00501 AMP-binding enzyme CQ11_RS01685 PF03477 ATP cone domain CQ11_RS01695 PF01726 LexA DNA binding domain CQ11_RS01695 PF00717 Peptidase S24-like CQ11_RS01700 PF13307 Helicase C-terminal domain CQ11_RS01705 PF13167 GTP-binding GTPase N-terminal CQ11_RS01705 PF16360 GTP-binding GTPase Middle Region CQ11_RS01705 PF01926 50S ribosome-binding GTPase CQ11_RS01710 PF08468 Methyltransferase small domain N-terminal CQ11_RS01710 PF05175 Methyltransferase small domain CQ11_RS01720 PF00919 Uncharacterized protein family UPF0004 CQ11_RS01720 PF04055 Radical SAM superfamily CQ11_RS01725 PF02631 RecX family CQ11_RS01730 PF00154 recA bacterial DNA recombination protein CQ11_RS01745 PF02464 Competence-damaged protein CQ11_RS01745 PF18146 Damage-inducible protein CinA KH domain CQ11_RS01745 PF00994 Probable molybdopterin binding domain CQ11_RS01750 PF01066 CDP-alcohol phosphatidyltransferase CQ11_RS01760 PF01580 FtsK/SpoIIIE family CQ11_RS01760 PF09397 Ftsk gamma domain CQ11_RS01760 PF17854 FtsK alpha domain CQ11_RS01765 PF12706 Beta-lactamase superfamily domain CQ11_RS01765 PF17770 Ribonuclease J C-terminal domain CQ11_RS01765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CQ11_RS01770 PF00701 Dihydrodipicolinate synthetase family CQ11_RS01785 PF05173 Dihydrodipicolinate reductase, C-terminus CQ11_RS01785 PF01113 Dihydrodipicolinate reductase, N-terminus CQ11_RS01790 PF00675 Insulinase (Peptidase family M16) CQ11_RS01790 PF05193 Peptidase M16 inactive domain CQ11_RS01800 PF00575 S1 RNA binding domain CQ11_RS01800 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CQ11_RS01800 PF01138 3' exoribonuclease family, domain 1 CQ11_RS01800 PF00013 KH domain CQ11_RS01805 PF00312 Ribosomal protein S15 CQ11_RS01815 PF00005 ABC transporter CQ11_RS01825 PF01687 Riboflavin kinase CQ11_RS01825 PF06574 FAD synthetase CQ11_RS01845 PF00005 ABC transporter CQ11_RS01845 PF08402 TOBE domain CQ11_RS01855 PF07690 Major Facilitator Superfamily CQ11_RS01860 PF00072 Response regulator receiver domain CQ11_RS01860 PF00486 Transcriptional regulatory protein, C terminal CQ11_RS01865 PF00989 PAS fold CQ11_RS01865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS01865 PF00512 His Kinase A (phospho-acceptor) domain CQ11_RS01870 PF09142 tRNA Pseudouridine synthase II, C terminal CQ11_RS01870 PF16198 tRNA pseudouridylate synthase B C-terminal domain CQ11_RS01870 PF01509 TruB family pseudouridylate synthase (N terminal domain) CQ11_RS01875 PF02033 Ribosome-binding factor A CQ11_RS01880 PF04760 Translation initiation factor IF-2, N-terminal region CQ11_RS01880 PF11987 Translation-initiation factor 2 CQ11_RS01880 PF00009 Elongation factor Tu GTP binding domain CQ11_RS01885 PF13184 NusA-like KH domain CQ11_RS01885 PF08529 NusA N-terminal domain CQ11_RS01890 PF17384 RimP C-terminal SH3 domain CQ11_RS01890 PF02576 RimP N-terminal domain CQ11_RS01900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_RS01900 PF03129 Anticodon binding domain CQ11_RS01900 PF04073 Aminoacyl-tRNA editing domain CQ11_RS01910 PF04551 GcpE protein CQ11_RS01915 PF17820 PDZ domain CQ11_RS01915 PF02163 Peptidase family M50 CQ11_RS01920 PF13288 DXP reductoisomerase C-terminal domain CQ11_RS01920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CQ11_RS01920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CQ11_RS01930 PF04055 Radical SAM superfamily CQ11_RS01940 PF01765 Ribosome recycling factor CQ11_RS01945 PF00696 Amino acid kinase family CQ11_RS01955 PF07690 Major Facilitator Superfamily CQ11_RS01965 PF01494 FAD binding domain CQ11_RS01970 PF01012 Electron transfer flavoprotein domain CQ11_RS01970 PF00766 Electron transfer flavoprotein FAD-binding domain CQ11_RS01975 PF01012 Electron transfer flavoprotein domain CQ11_RS01980 PF00889 Elongation factor TS CQ11_RS01985 PF00318 Ribosomal protein S2 CQ11_RS01990 PF03458 UPF0126 domain CQ11_RS01995 PF01551 Peptidase family M23 CQ11_RS02000 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_RS02000 PF00589 Phage integrase family CQ11_RS02005 PF17782 DprA winged helix domain CQ11_RS02005 PF02481 DNA recombination-mediator protein A CQ11_RS02010 PF01078 Magnesium chelatase, subunit ChlI CQ11_RS02010 PF13335 Magnesium chelatase, subunit ChlI C-terminal CQ11_RS02015 PF02021 Uncharacterised protein family UPF0102 CQ11_RS02020 PF10611 Protein of unknown function (DUF2469) CQ11_RS02025 PF01351 Ribonuclease HII CQ11_RS02030 PF10502 Signal peptidase, peptidase S26 CQ11_RS02035 PF03448 MgtE intracellular N domain CQ11_RS02035 PF01769 Divalent cation transporter CQ11_RS02035 PF00571 CBS domain CQ11_RS02040 PF01245 Ribosomal protein L19 CQ11_RS02045 PF01746 tRNA (Guanine-1)-methyltransferase CQ11_RS02050 PF05239 PRC-barrel domain CQ11_RS02050 PF01782 RimM N-terminal domain CQ11_RS02060 PF00886 Ribosomal protein S16 CQ11_RS02065 PF01545 Cation efflux family CQ11_RS02065 PF16916 Dimerisation domain of Zinc Transporter CQ11_RS02075 PF01979 Amidohydrolase family CQ11_RS02080 PF02881 SRP54-type protein, helical bundle domain CQ11_RS02080 PF00448 SRP54-type protein, GTPase domain CQ11_RS02080 PF02978 Signal peptide binding domain CQ11_RS02085 PF02881 SRP54-type protein, helical bundle domain CQ11_RS02085 PF00448 SRP54-type protein, GTPase domain CQ11_RS02090 PF17440 Thiol-activated cytolysin beta sandwich domain CQ11_RS02090 PF01289 Thiol-activated cytolysin CQ11_RS02100 PF02463 RecF/RecN/SMC N terminal domain CQ11_RS02100 PF06470 SMC proteins Flexible Hinge Domain CQ11_RS02105 PF00334 Nucleoside diphosphate kinase CQ11_RS02110 PF08245 Mur ligase middle domain CQ11_RS02110 PF02875 Mur ligase family, glutamate ligase domain CQ11_RS02115 PF08264 Anticodon-binding domain of tRNA CQ11_RS02115 PF00133 tRNA synthetases class I (I, L, M and V) CQ11_RS02130 PF03807 NADP oxidoreductase coenzyme F420-dependent CQ11_RS02130 PF14748 Pyrroline-5-carboxylate reductase dimerisation CQ11_RS02140 PF00133 tRNA synthetases class I (I, L, M and V) CQ11_RS02140 PF08264 Anticodon-binding domain of tRNA CQ11_RS02145 PF00501 AMP-binding enzyme CQ11_RS02150 PF01817 Chorismate mutase type II CQ11_RS02150 PF02153 Prephenate dehydrogenase CQ11_RS02155 PF07724 AAA domain (Cdc48 subfamily) CQ11_RS02155 PF10431 C-terminal, D2-small domain, of ClpB protein CQ11_RS02155 PF06689 ClpX C4-type zinc finger CQ11_RS02160 PF00574 Clp protease CQ11_RS02165 PF00574 Clp protease CQ11_RS02170 PF05698 Bacterial trigger factor protein (TF) C-terminus CQ11_RS02170 PF05697 Bacterial trigger factor protein (TF) CQ11_RS02170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQ11_RS02175 PF00248 Aldo/keto reductase family CQ11_RS02185 PF00933 Glycosyl hydrolase family 3 N terminal domain CQ11_RS02195 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_RS02195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_RS02195 PF00703 Glycosyl hydrolases family 2 CQ11_RS02200 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS02230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS02230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_RS02240 PF01783 Ribosomal L32p protein family CQ11_RS02245 PF09186 Domain of unknown function (DUF1949) CQ11_RS02245 PF01205 Uncharacterized protein family UPF0029 CQ11_RS02250 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_RS02255 PF00132 Bacterial transferase hexapeptide (six repeats) CQ11_RS02260 PF02502 Ribose/Galactose Isomerase CQ11_RS02265 PF05649 Peptidase family M13 CQ11_RS02265 PF01431 Peptidase family M13 CQ11_RS02270 PF05661 Protein of unknown function (DUF808) CQ11_RS02275 PF11838 ERAP1-like C-terminal domain CQ11_RS02275 PF01433 Peptidase family M1 domain CQ11_RS02280 PF13673 Acetyltransferase (GNAT) domain CQ11_RS02280 PF03352 Methyladenine glycosylase CQ11_RS02280 PF00117 Glutamine amidotransferase class-I CQ11_RS02280 PF13302 Acetyltransferase (GNAT) domain CQ11_RS02280 PF00958 GMP synthase C terminal domain CQ11_RS02290 PF02446 4-alpha-glucanotransferase CQ11_RS02300 PF00005 ABC transporter CQ11_RS02300 PF12848 ABC transporter CQ11_RS02325 PF00929 Exonuclease CQ11_RS02345 PF00535 Glycosyl transferase family 2 CQ11_RS02355 PF00535 Glycosyl transferase family 2 CQ11_RS02370 PF00535 Glycosyl transferase family 2 CQ11_RS02385 PF01501 Glycosyl transferase family 8 CQ11_RS02385 PF00535 Glycosyl transferase family 2 CQ11_RS02390 PF04991 LicD family CQ11_RS02395 PF12804 MobA-like NTP transferase domain CQ11_RS02400 PF13439 Glycosyltransferase Family 4 CQ11_RS02400 PF00534 Glycosyl transferases group 1 CQ11_RS02410 PF00271 Helicase conserved C-terminal domain CQ11_RS02410 PF08148 DSHCT (NUC185) domain CQ11_RS02410 PF00270 DEAD/DEAH box helicase CQ11_RS02415 PF01168 Alanine racemase, N-terminal domain CQ11_RS02420 PF04055 Radical SAM superfamily CQ11_RS02425 PF02901 Pyruvate formate lyase-like CQ11_RS02425 PF01228 Glycine radical CQ11_RS02430 PF02901 Pyruvate formate lyase-like CQ11_RS02430 PF01228 Glycine radical CQ11_RS02435 PF01063 Amino-transferase class IV CQ11_RS02455 PF00206 Lyase CQ11_RS02455 PF10415 Fumarase C C-terminus CQ11_RS02460 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CQ11_RS02460 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CQ11_RS02465 PF10369 Small subunit of acetolactate synthase CQ11_RS02470 PF00205 Thiamine pyrophosphate enzyme, central domain CQ11_RS02470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQ11_RS02470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQ11_RS02475 PF02080 TrkA-C domain CQ11_RS02475 PF06826 Predicted Permease Membrane Region CQ11_RS02480 PF00920 Dehydratase family CQ11_RS02485 PF08241 Methyltransferase domain CQ11_RS02505 PF00950 ABC 3 transport family CQ11_RS02510 PF00950 ABC 3 transport family CQ11_RS02515 PF00005 ABC transporter CQ11_RS02520 PF01297 Zinc-uptake complex component A periplasmic CQ11_RS02525 PF00579 tRNA synthetases class I (W and Y) CQ11_RS02530 PF00005 ABC transporter CQ11_RS02540 PF01381 Helix-turn-helix CQ11_RS02550 PF16363 GDP-mannose 4,6 dehydratase CQ11_RS02555 PF01316 Arginine repressor, DNA binding domain CQ11_RS02555 PF02863 Arginine repressor, C-terminal domain CQ11_RS02560 PF00202 Aminotransferase class-III CQ11_RS02570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CQ11_RS02570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CQ11_RS02575 PF04073 Aminoacyl-tRNA editing domain CQ11_RS02580 PF01588 Putative tRNA binding domain CQ11_RS02580 PF03147 Ferredoxin-fold anticodon binding domain CQ11_RS02580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CQ11_RS02580 PF03484 tRNA synthetase B5 domain CQ11_RS02580 PF03483 B3/4 domain CQ11_RS02585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CQ11_RS02585 PF01409 tRNA synthetases class II core domain (F) CQ11_RS02590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CQ11_RS02595 PF00588 SpoU rRNA Methylase family CQ11_RS02595 PF08032 RNA 2'-O ribose methyltransferase substrate binding CQ11_RS02605 PF00453 Ribosomal protein L20 CQ11_RS02610 PF01632 Ribosomal protein L35 CQ11_RS02615 PF05198 Translation initiation factor IF-3, N-terminal domain CQ11_RS02615 PF00707 Translation initiation factor IF-3, C-terminal domain CQ11_RS02625 PF00977 Histidine biosynthesis protein CQ11_RS02630 PF00117 Glutamine amidotransferase class-I CQ11_RS02640 PF00475 Imidazoleglycerol-phosphate dehydratase CQ11_RS02645 PF00155 Aminotransferase class I and II CQ11_RS02650 PF00815 Histidinol dehydrogenase CQ11_RS02655 PF01255 Putative undecaprenyl diphosphate synthase CQ11_RS02660 PF02565 Recombination protein O C terminal CQ11_RS02660 PF11967 Recombination protein O N terminal CQ11_RS02665 PF00682 HMGL-like CQ11_RS02665 PF08502 LeuA allosteric (dimerisation) domain CQ11_RS02690 PF07650 KH domain CQ11_RS02690 PF01926 50S ribosome-binding GTPase CQ11_RS02695 PF01595 Cyclin M transmembrane N-terminal domain CQ11_RS02695 PF00571 CBS domain CQ11_RS02695 PF03471 Transporter associated domain CQ11_RS02700 PF02130 Uncharacterized protein family UPF0054 CQ11_RS02705 PF02562 PhoH-like protein CQ11_RS02710 PF04452 RNA methyltransferase CQ11_RS02715 PF00684 DnaJ central domain CQ11_RS02715 PF00226 DnaJ domain CQ11_RS02715 PF01556 DnaJ C terminal domain CQ11_RS02720 PF08220 DeoR-like helix-turn-helix domain CQ11_RS02720 PF01628 HrcA protein C terminal domain CQ11_RS02735 PF04055 Radical SAM superfamily CQ11_RS02740 PF02390 Putative methyltransferase CQ11_RS02745 PF06421 GTP-binding protein LepA C-terminus CQ11_RS02745 PF00009 Elongation factor Tu GTP binding domain CQ11_RS02745 PF00679 Elongation factor G C-terminus CQ11_RS02770 PF01649 Ribosomal protein S20 CQ11_RS02775 PF02233 NAD(P) transhydrogenase beta subunit CQ11_RS02780 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CQ11_RS02780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CQ11_RS02780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CQ11_RS02800 PF05872 Bacterial protein of unknown function (DUF853) CQ11_RS02815 PF09334 tRNA synthetases class I (M) CQ11_RS02815 PF13603 Leucyl-tRNA synthetase, Domain 2 CQ11_RS02815 PF08264 Anticodon-binding domain of tRNA CQ11_RS02820 PF01230 HIT domain CQ11_RS02835 PF01594 AI-2E family transporter CQ11_RS02840 PF01048 Phosphorylase superfamily CQ11_RS02845 PF02742 Iron dependent repressor, metal binding and dimerisation domain CQ11_RS02845 PF00950 ABC 3 transport family CQ11_RS02850 PF00265 Thymidine kinase CQ11_RS02860 PF01022 Bacterial regulatory protein, arsR family CQ11_RS02870 PF01297 Zinc-uptake complex component A periplasmic CQ11_RS02880 PF00005 ABC transporter CQ11_RS02885 PF00950 ABC 3 transport family CQ11_RS02890 PF00294 pfkB family carbohydrate kinase CQ11_RS02900 PF01569 PAP2 superfamily CQ11_RS02925 PF00324 Amino acid permease CQ11_RS02930 PF05681 Fumarate hydratase (Fumerase) CQ11_RS02930 PF05683 Fumarase C-terminus CQ11_RS02935 PF00005 ABC transporter CQ11_RS02935 PF09383 NIL domain CQ11_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS02945 PF03180 NLPA lipoprotein CQ11_RS02950 PF00324 Amino acid permease CQ11_RS02960 PF03591 AzlC protein CQ11_RS02970 PF07690 Major Facilitator Superfamily CQ11_RS02975 PF01156 Inosine-uridine preferring nucleoside hydrolase CQ11_RS02980 PF01136 Peptidase family U32 CQ11_RS02980 PF16325 Peptidase family U32 C-terminal domain CQ11_RS02990 PF01174 SNO glutamine amidotransferase family CQ11_RS02995 PF01680 SOR/SNZ family CQ11_RS03000 PF00392 Bacterial regulatory proteins, gntR family CQ11_RS03040 PF01522 Polysaccharide deacetylase CQ11_RS03045 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_RS03050 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS03055 PF05025 RbsD / FucU transport protein family CQ11_RS03060 PF07690 Major Facilitator Superfamily CQ11_RS03065 PF00596 Class II Aldolase and Adducin N-terminal domain CQ11_RS03075 PF02952 L-fucose isomerase, C-terminal domain CQ11_RS03075 PF07881 L-fucose isomerase, first N-terminal domain CQ11_RS03075 PF07882 L-fucose isomerase, second N-terminal domain CQ11_RS03100 PF00239 Resolvase, N terminal domain CQ11_RS03100 PF02796 Helix-turn-helix domain of resolvase CQ11_RS03125 PF05105 Bacteriophage holin family CQ11_RS03210 PF00574 Clp protease CQ11_RS03215 PF04860 Phage portal protein CQ11_RS03250 PF01555 DNA methylase CQ11_RS03255 PF02773 S-adenosylmethionine synthetase, C-terminal domain CQ11_RS03255 PF00438 S-adenosylmethionine synthetase, N-terminal domain CQ11_RS03255 PF02772 S-adenosylmethionine synthetase, central domain CQ11_RS03310 PF10548 P22AR C-terminal domain CQ11_RS03310 PF02498 BRO family, N-terminal domain CQ11_RS03325 PF00476 DNA polymerase family A CQ11_RS03325 PF01367 5'-3' exonuclease, C-terminal SAM fold CQ11_RS03325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CQ11_RS03325 PF01612 3'-5' exonuclease CQ11_RS03375 PF13166 AAA domain CQ11_RS03385 PF08463 EcoEI R protein C-terminal CQ11_RS03385 PF00271 Helicase conserved C-terminal domain CQ11_RS03385 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CQ11_RS03385 PF04851 Type III restriction enzyme, res subunit CQ11_RS03390 PF02384 N-6 DNA Methylase CQ11_RS03410 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_RS03425 PF01467 Cytidylyltransferase-like CQ11_RS03430 PF00085 Thioredoxin CQ11_RS03440 PF01018 GTP1/OBG CQ11_RS03440 PF01926 50S ribosome-binding GTPase CQ11_RS03440 PF09269 Domain of unknown function (DUF1967) CQ11_RS03445 PF01016 Ribosomal L27 protein CQ11_RS03450 PF00829 Ribosomal prokaryotic L21 protein CQ11_RS03455 PF10150 Ribonuclease E/G family CQ11_RS03460 PF01654 Cytochrome bd terminal oxidase subunit I CQ11_RS03465 PF02322 Cytochrome bd terminal oxidase subunit II CQ11_RS03470 PF00664 ABC transporter transmembrane region CQ11_RS03470 PF00005 ABC transporter CQ11_RS03475 PF00664 ABC transporter transmembrane region CQ11_RS03475 PF00005 ABC transporter CQ11_RS03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS03480 PF07730 Histidine kinase CQ11_RS03480 PF13185 GAF domain CQ11_RS03485 PF00005 ABC transporter CQ11_RS03485 PF00664 ABC transporter transmembrane region CQ11_RS03490 PF00005 ABC transporter CQ11_RS03490 PF00664 ABC transporter transmembrane region CQ11_RS03495 PF00578 AhpC/TSA family CQ11_RS03495 PF10417 C-terminal domain of 1-Cys peroxiredoxin CQ11_RS03500 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS03500 PF13192 Thioredoxin domain CQ11_RS03505 PF00196 Bacterial regulatory proteins, luxR family CQ11_RS03505 PF00072 Response regulator receiver domain CQ11_RS03510 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CQ11_RS03510 PF06827 Zinc finger found in FPG and IleRS CQ11_RS03510 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CQ11_RS03515 PF14622 Ribonuclease-III-like CQ11_RS03515 PF00035 Double-stranded RNA binding motif CQ11_RS03520 PF02620 Large ribosomal RNA subunit accumulation protein YceD CQ11_RS03530 PF01467 Cytidylyltransferase-like CQ11_RS03540 PF17191 RecG wedge domain CQ11_RS03540 PF00271 Helicase conserved C-terminal domain CQ11_RS03540 PF00270 DEAD/DEAH box helicase CQ11_RS03545 PF00830 Ribosomal L28 family CQ11_RS03555 PF02769 AIR synthase related protein, C-terminal domain CQ11_RS03555 PF00586 AIR synthase related protein, N-terminal domain CQ11_RS03560 PF03358 NADPH-dependent FMN reductase CQ11_RS03565 PF01820 D-ala D-ala ligase N-terminus CQ11_RS03565 PF07478 D-ala D-ala ligase C-terminus CQ11_RS03570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CQ11_RS03580 PF03577 Peptidase family C69 CQ11_RS03590 PF00534 Glycosyl transferases group 1 CQ11_RS03590 PF13439 Glycosyltransferase Family 4 CQ11_RS03610 PF01432 Peptidase family M3 CQ11_RS03635 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS03640 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS03645 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS03655 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQ11_RS03660 PF00155 Aminotransferase class I and II CQ11_RS03665 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQ11_RS03670 PF00501 AMP-binding enzyme CQ11_RS03680 PF00578 AhpC/TSA family CQ11_RS03695 PF01725 Ham1 family CQ11_RS03700 PF03725 3' exoribonuclease family, domain 2 CQ11_RS03700 PF01138 3' exoribonuclease family, domain 1 CQ11_RS03705 PF12706 Beta-lactamase superfamily domain CQ11_RS03710 PF01177 Asp/Glu/Hydantoin racemase CQ11_RS03720 PF02617 ATP-dependent Clp protease adaptor protein ClpS CQ11_RS03725 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CQ11_RS03725 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CQ11_RS03730 PF04851 Type III restriction enzyme, res subunit CQ11_RS03740 PF00216 Bacterial DNA-binding protein CQ11_RS03745 PF02080 TrkA-C domain CQ11_RS03745 PF06826 Predicted Permease Membrane Region CQ11_RS03760 PF02540 NAD synthase CQ11_RS03775 PF02225 PA domain CQ11_RS03775 PF00746 LPXTG cell wall anchor motif CQ11_RS03775 PF00082 Subtilase family CQ11_RS03775 PF06280 Fn3-like domain CQ11_RS03800 PF01047 MarR family CQ11_RS03805 PF00005 ABC transporter CQ11_RS03805 PF17760 UvrA interaction domain CQ11_RS03805 PF17755 UvrA DNA-binding domain CQ11_RS03825 PF17676 LD-carboxypeptidase C-terminal domain CQ11_RS03825 PF02016 LD-carboxypeptidase N-terminal domain CQ11_RS03830 PF13344 Haloacid dehalogenase-like hydrolase CQ11_RS03835 PF01668 SmpB protein CQ11_RS03840 PF01551 Peptidase family M23 CQ11_RS03840 PF04225 Opacity-associated protein A LysM-like domain CQ11_RS03845 PF02687 FtsX-like permease family CQ11_RS03845 PF18075 FtsX extracellular domain CQ11_RS03850 PF00005 ABC transporter CQ11_RS03855 PF00472 RF-1 domain CQ11_RS03855 PF03462 PCRF domain CQ11_RS03890 PF00437 Type II/IV secretion system protein CQ11_RS03900 PF13361 UvrD-like helicase C-terminal domain CQ11_RS03900 PF00580 UvrD/REP helicase N-terminal domain CQ11_RS03915 PF00270 DEAD/DEAH box helicase CQ11_RS03915 PF00271 Helicase conserved C-terminal domain CQ11_RS03920 PF01914 MarC family integral membrane protein CQ11_RS03930 PF00557 Metallopeptidase family M24 CQ11_RS03930 PF05195 Aminopeptidase P, N-terminal domain CQ11_RS03935 PF00571 CBS domain CQ11_RS03935 PF03448 MgtE intracellular N domain CQ11_RS03935 PF01769 Divalent cation transporter CQ11_RS03945 PF01883 Iron-sulfur cluster assembly protein CQ11_RS03945 PF10609 NUBPL iron-transfer P-loop NTPase CQ11_RS03950 PF01596 O-methyltransferase CQ11_RS03955 PF03641 Possible lysine decarboxylase CQ11_RS03960 PF01048 Phosphorylase superfamily CQ11_RS03965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQ11_RS03965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQ11_RS03965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQ11_RS03965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQ11_RS03980 PF01791 DeoC/LacD family aldolase CQ11_RS03990 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CQ11_RS03990 PF00591 Glycosyl transferase family, a/b domain CQ11_RS03990 PF02885 Glycosyl transferase family, helical bundle domain CQ11_RS03995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CQ11_RS04000 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS04005 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS04010 PF00005 ABC transporter CQ11_RS04015 PF02608 ABC transporter substrate-binding protein PnrA-like CQ11_RS04020 PF01050 Mannose-6-phosphate isomerase CQ11_RS04020 PF00483 Nucleotidyl transferase CQ11_RS04035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CQ11_RS04035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CQ11_RS04040 PF00464 Serine hydroxymethyltransferase CQ11_RS04045 PF00551 Formyl transferase CQ11_RS04055 PF01648 4'-phosphopantetheinyl transferase superfamily CQ11_RS04060 PF00698 Acyl transferase domain CQ11_RS04065 PF01039 Carboxyl transferase domain CQ11_RS04070 PF00364 Biotin-requiring enzyme CQ11_RS04070 PF02785 Biotin carboxylase C-terminal domain CQ11_RS04070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQ11_RS04070 PF00289 Biotin carboxylase, N-terminal domain CQ11_RS04090 PF01494 FAD binding domain CQ11_RS04095 PF00766 Electron transfer flavoprotein FAD-binding domain CQ11_RS04095 PF01012 Electron transfer flavoprotein domain CQ11_RS04110 PF00753 Metallo-beta-lactamase superfamily CQ11_RS04115 PF00083 Sugar (and other) transporter CQ11_RS04120 PF01575 MaoC like domain CQ11_RS04125 PF13193 AMP-binding enzyme C-terminal domain CQ11_RS04125 PF00501 AMP-binding enzyme CQ11_RS04130 PF02515 CoA-transferase family III CQ11_RS04135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQ11_RS04135 PF02770 Acyl-CoA dehydrogenase, middle domain CQ11_RS04135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQ11_RS04140 PF07859 alpha/beta hydrolase fold CQ11_RS04160 PF00056 lactate/malate dehydrogenase, NAD binding domain CQ11_RS04160 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CQ11_RS04175 PF00342 Phosphoglucose isomerase CQ11_RS04180 PF00365 Phosphofructokinase CQ11_RS04190 PF01808 AICARFT/IMPCHase bienzyme CQ11_RS04190 PF02142 MGS-like domain CQ11_RS04205 PF02629 CoA binding domain CQ11_RS04205 PF00549 CoA-ligase CQ11_RS04210 PF08442 ATP-grasp domain CQ11_RS04210 PF00549 CoA-ligase CQ11_RS04215 PF01757 Acyltransferase family CQ11_RS04220 PF13361 UvrD-like helicase C-terminal domain CQ11_RS04220 PF00580 UvrD/REP helicase N-terminal domain CQ11_RS04245 PF00679 Elongation factor G C-terminus CQ11_RS04245 PF14492 Elongation Factor G, domain II CQ11_RS04245 PF03764 Elongation factor G, domain IV CQ11_RS04245 PF00009 Elongation factor Tu GTP binding domain CQ11_RS04265 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_RS04265 PF00589 Phage integrase family CQ11_RS04280 PF00117 Glutamine amidotransferase class-I CQ11_RS04280 PF02540 NAD synthase CQ11_RS04280 PF00958 GMP synthase C terminal domain CQ11_RS04285 PF00849 RNA pseudouridylate synthase CQ11_RS04290 PF01515 Phosphate acetyl/butaryl transferase CQ11_RS04290 PF07085 DRTGG domain CQ11_RS04295 PF00871 Acetokinase family CQ11_RS04310 PF00005 ABC transporter CQ11_RS04320 PF00206 Lyase CQ11_RS04320 PF10415 Fumarase C C-terminus CQ11_RS04325 PF00478 IMP dehydrogenase / GMP reductase domain CQ11_RS04335 PF00478 IMP dehydrogenase / GMP reductase domain CQ11_RS04335 PF00571 CBS domain CQ11_RS04340 PF02467 Transcription factor WhiB CQ11_RS04350 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CQ11_RS04350 PF00586 AIR synthase related protein, N-terminal domain CQ11_RS04350 PF02769 AIR synthase related protein, C-terminal domain CQ11_RS04355 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CQ11_RS04355 PF02843 Phosphoribosylglycinamide synthetase, C domain CQ11_RS04355 PF02844 Phosphoribosylglycinamide synthetase, N domain CQ11_RS04360 PF00551 Formyl transferase CQ11_RS04365 PF02769 AIR synthase related protein, C-terminal domain CQ11_RS04365 PF00586 AIR synthase related protein, N-terminal domain CQ11_RS04370 PF00156 Phosphoribosyl transferase domain CQ11_RS04370 PF13537 Glutamine amidotransferase domain CQ11_RS04375 PF01259 SAICAR synthetase CQ11_RS04380 PF00731 AIR carboxylase CQ11_RS04390 PF00166 Chaperonin 10 Kd subunit CQ11_RS04400 PF02535 ZIP Zinc transporter CQ11_RS04405 PF00814 Glycoprotease family CQ11_RS04410 PF00209 Sodium:neurotransmitter symporter family CQ11_RS04415 PF13085 2Fe-2S iron-sulfur cluster binding domain CQ11_RS04415 PF13183 4Fe-4S dicluster domain CQ11_RS04420 PF02910 Fumarate reductase flavoprotein C-term CQ11_RS04420 PF00890 FAD binding domain CQ11_RS04435 PF00814 Glycoprotease family CQ11_RS04445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CQ11_RS04450 PF00842 Alanine racemase, C-terminal domain CQ11_RS04450 PF01168 Alanine racemase, N-terminal domain CQ11_RS04455 PF01256 Carbohydrate kinase CQ11_RS04455 PF03853 YjeF-related protein N-terminus CQ11_RS04460 PF01380 SIS domain CQ11_RS04465 PF00485 Phosphoribulokinase / Uridine kinase family CQ11_RS04470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQ11_RS04470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQ11_RS04470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQ11_RS04470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQ11_RS04475 PF00380 Ribosomal protein S9/S16 CQ11_RS04480 PF00572 Ribosomal protein L13 CQ11_RS04490 PF07155 ECF-type riboflavin transporter, S component CQ11_RS04495 PF12558 ATP-binding cassette cobalt transporter CQ11_RS04495 PF00005 ABC transporter CQ11_RS04505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQ11_RS04505 PF03466 LysR substrate binding domain CQ11_RS04515 PF01416 tRNA pseudouridine synthase CQ11_RS04520 PF00480 ROK family CQ11_RS04530 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS04535 PF00005 ABC transporter CQ11_RS04540 PF07739 TipAS antibiotic-recognition domain CQ11_RS04540 PF13411 MerR HTH family regulatory protein CQ11_RS04550 PF01196 Ribosomal protein L17 CQ11_RS04555 PF01000 RNA polymerase Rpb3/RpoA insert domain CQ11_RS04555 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CQ11_RS04555 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CQ11_RS04560 PF00411 Ribosomal protein S11 CQ11_RS04565 PF00416 Ribosomal protein S13/S18 CQ11_RS04570 PF00444 Ribosomal protein L36 CQ11_RS04575 PF01176 Translation initiation factor 1A / IF-1 CQ11_RS04580 PF00557 Metallopeptidase family M24 CQ11_RS04590 PF00344 SecY translocase CQ11_RS04595 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CQ11_RS04600 PF00327 Ribosomal protein L30p/L7e CQ11_RS04605 PF00333 Ribosomal protein S5, N-terminal domain CQ11_RS04605 PF03719 Ribosomal protein S5, C-terminal domain CQ11_RS04610 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CQ11_RS04615 PF00347 Ribosomal protein L6 CQ11_RS04620 PF00410 Ribosomal protein S8 CQ11_RS04625 PF00253 Ribosomal protein S14p/S29e CQ11_RS04630 PF00673 ribosomal L5P family C-terminus CQ11_RS04630 PF00281 Ribosomal protein L5 CQ11_RS04635 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CQ11_RS04640 PF00238 Ribosomal protein L14p/L23e CQ11_RS04645 PF00366 Ribosomal protein S17 CQ11_RS04650 PF00831 Ribosomal L29 protein CQ11_RS04655 PF00252 Ribosomal protein L16p/L10e CQ11_RS04660 PF07650 KH domain CQ11_RS04660 PF00189 Ribosomal protein S3, C-terminal domain CQ11_RS04665 PF00237 Ribosomal protein L22p/L17e CQ11_RS04670 PF00203 Ribosomal protein S19 CQ11_RS04675 PF00181 Ribosomal Proteins L2, RNA binding domain CQ11_RS04675 PF03947 Ribosomal Proteins L2, C-terminal domain CQ11_RS04680 PF00276 Ribosomal protein L23 CQ11_RS04685 PF00573 Ribosomal protein L4/L1 family CQ11_RS04690 PF00297 Ribosomal protein L3 CQ11_RS04695 PF00338 Ribosomal protein S10p/S20e CQ11_RS04705 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CQ11_RS04705 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CQ11_RS04710 PF03143 Elongation factor Tu C-terminal domain CQ11_RS04710 PF00009 Elongation factor Tu GTP binding domain CQ11_RS04710 PF03144 Elongation factor Tu domain 2 CQ11_RS04715 PF00679 Elongation factor G C-terminus CQ11_RS04715 PF14492 Elongation Factor G, domain II CQ11_RS04715 PF03764 Elongation factor G, domain IV CQ11_RS04715 PF00009 Elongation factor Tu GTP binding domain CQ11_RS04715 PF03144 Elongation factor Tu domain 2 CQ11_RS04720 PF00177 Ribosomal protein S7p/S5e CQ11_RS04725 PF00164 Ribosomal protein S12/S23 CQ11_RS04730 PF00324 Amino acid permease CQ11_RS04735 PF04997 RNA polymerase Rpb1, domain 1 CQ11_RS04735 PF04998 RNA polymerase Rpb1, domain 5 CQ11_RS04735 PF00623 RNA polymerase Rpb1, domain 2 CQ11_RS04735 PF04983 RNA polymerase Rpb1, domain 3 CQ11_RS04735 PF05000 RNA polymerase Rpb1, domain 4 CQ11_RS04740 PF04563 RNA polymerase beta subunit CQ11_RS04740 PF04561 RNA polymerase Rpb2, domain 2 CQ11_RS04740 PF04560 RNA polymerase Rpb2, domain 7 CQ11_RS04740 PF10385 RNA polymerase beta subunit external 1 domain CQ11_RS04740 PF04565 RNA polymerase Rpb2, domain 3 CQ11_RS04740 PF00562 RNA polymerase Rpb2, domain 6 CQ11_RS04745 PF16320 Ribosomal protein L7/L12 dimerisation domain CQ11_RS04745 PF00542 Ribosomal protein L7/L12 C-terminal domain CQ11_RS04750 PF00466 Ribosomal protein L10 CQ11_RS04755 PF00485 Phosphoribulokinase / Uridine kinase family CQ11_RS04760 PF00687 Ribosomal protein L1p/L10e family CQ11_RS04765 PF00298 Ribosomal protein L11, RNA binding domain CQ11_RS04765 PF03946 Ribosomal protein L11, N-terminal domain CQ11_RS04770 PF02357 Transcription termination factor nusG CQ11_RS04775 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CQ11_RS04785 PF00155 Aminotransferase class I and II CQ11_RS04795 PF00962 Adenosine/AMP deaminase CQ11_RS04810 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CQ11_RS04810 PF01565 FAD binding domain CQ11_RS04820 PF00471 Ribosomal protein L33 CQ11_RS04840 PF04461 Protein of unknown function (DUF520) CQ11_RS04845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS04850 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CQ11_RS04850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CQ11_RS04855 PF00156 Phosphoribosyl transferase domain CQ11_RS04860 PF10647 Lipoprotein LpqB beta-propeller domain CQ11_RS04860 PF10646 Sporulation and spore germination CQ11_RS04865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS04865 PF00512 His Kinase A (phospho-acceptor) domain CQ11_RS04865 PF00672 HAMP domain CQ11_RS04870 PF00486 Transcriptional regulatory protein, C terminal CQ11_RS04870 PF00072 Response regulator receiver domain CQ11_RS04890 PF17863 AAA lid domain CQ11_RS04890 PF07726 ATPase family associated with various cellular activities (AAA) CQ11_RS04930 PF02467 Transcription factor WhiB CQ11_RS04935 PF00459 Inositol monophosphatase family CQ11_RS04945 PF01758 Sodium Bile acid symporter family CQ11_RS04950 PF00483 Nucleotidyl transferase CQ11_RS04955 PF04321 RmlD substrate binding domain CQ11_RS04985 PF14524 Wzt C-terminal domain CQ11_RS04985 PF00005 ABC transporter CQ11_RS04995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CQ11_RS04995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CQ11_RS04995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CQ11_RS05010 PF02350 UDP-N-acetylglucosamine 2-epimerase CQ11_RS05045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_RS05045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_RS05050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CQ11_RS05055 PF00132 Bacterial transferase hexapeptide (six repeats) CQ11_RS05070 PF16363 GDP-mannose 4,6 dehydratase CQ11_RS05080 PF00534 Glycosyl transferases group 1 CQ11_RS05080 PF00535 Glycosyl transferase family 2 CQ11_RS05085 PF03816 Cell envelope-related transcriptional attenuator domain CQ11_RS05090 PF03816 Cell envelope-related transcriptional attenuator domain CQ11_RS05100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS05100 PF00512 His Kinase A (phospho-acceptor) domain CQ11_RS05100 PF00672 HAMP domain CQ11_RS05105 PF00072 Response regulator receiver domain CQ11_RS05105 PF00486 Transcriptional regulatory protein, C terminal CQ11_RS05110 PF16701 Adenylate cyclase regulatory domain CQ11_RS05110 PF00211 Adenylate and Guanylate cyclase catalytic domain CQ11_RS05120 PF02545 Maf-like protein CQ11_RS05130 PF00285 Citrate synthase, C-terminal domain CQ11_RS05135 PF00155 Aminotransferase class I and II CQ11_RS05140 PF00037 4Fe-4S binding domain CQ11_RS05155 PF03144 Elongation factor Tu domain 2 CQ11_RS05155 PF14492 Elongation Factor G, domain II CQ11_RS05155 PF00679 Elongation factor G C-terminus CQ11_RS05155 PF00009 Elongation factor Tu GTP binding domain CQ11_RS05165 PF00005 ABC transporter CQ11_RS05165 PF00664 ABC transporter transmembrane region CQ11_RS05170 PF00664 ABC transporter transmembrane region CQ11_RS05170 PF00005 ABC transporter CQ11_RS05175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQ11_RS05180 PF00005 ABC transporter CQ11_RS05180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_RS05185 PF12911 N-terminal TM domain of oligopeptide transport permease C CQ11_RS05185 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05190 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05195 PF03099 Biotin/lipoate A/B protein ligase family CQ11_RS05200 PF04055 Radical SAM superfamily CQ11_RS05205 PF00501 AMP-binding enzyme CQ11_RS05205 PF13193 AMP-binding enzyme C-terminal domain CQ11_RS05210 PF02127 Aminopeptidase I zinc metalloprotease (M18) CQ11_RS05225 PF03971 Monomeric isocitrate dehydrogenase CQ11_RS05230 PF04143 Sulphur transport CQ11_RS05235 PF01206 Sulfurtransferase TusA CQ11_RS05240 PF00128 Alpha amylase, catalytic domain CQ11_RS05245 PF01055 Glycosyl hydrolases family 31 CQ11_RS05245 PF13802 Galactose mutarotase-like CQ11_RS05255 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05260 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05265 PF00480 ROK family CQ11_RS05290 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05295 PF00005 ABC transporter CQ11_RS05295 PF08402 TOBE domain CQ11_RS05325 PF00005 ABC transporter CQ11_RS05325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_RS05330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_RS05330 PF00005 ABC transporter CQ11_RS05335 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05335 PF12911 N-terminal TM domain of oligopeptide transport permease C CQ11_RS05340 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQ11_RS05350 PF01226 Formate/nitrite transporter CQ11_RS05360 PF01327 Polypeptide deformylase CQ11_RS05365 PF01741 Large-conductance mechanosensitive channel, MscL CQ11_RS05390 PF00583 Acetyltransferase (GNAT) family CQ11_RS05390 PF01047 MarR family CQ11_RS05395 PF07972 NrdI Flavodoxin like CQ11_RS05400 PF00268 Ribonucleotide reductase, small chain CQ11_RS05405 PF03358 NADPH-dependent FMN reductase CQ11_RS05410 PF00440 Bacterial regulatory proteins, tetR family CQ11_RS05415 PF00083 Sugar (and other) transporter CQ11_RS05415 PF08946 Osmosensory transporter coiled coil CQ11_RS05430 PF00696 Amino acid kinase family CQ11_RS05435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQ11_RS05435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQ11_RS05445 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS05450 PF00128 Alpha amylase, catalytic domain CQ11_RS05450 PF16657 Maltogenic Amylase, C-terminal domain CQ11_RS05450 PF02903 Alpha amylase, N-terminal ig-like domain CQ11_RS05455 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05460 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS05465 PF13416 Bacterial extracellular solute-binding protein CQ11_RS05470 PF00128 Alpha amylase, catalytic domain CQ11_RS05475 PF07690 Major Facilitator Superfamily CQ11_RS05480 PF01546 Peptidase family M20/M25/M40 CQ11_RS05480 PF07687 Peptidase dimerisation domain CQ11_RS05485 PF07690 Major Facilitator Superfamily CQ11_RS05485 PF00083 Sugar (and other) transporter CQ11_RS05525 PF06071 Protein of unknown function (DUF933) CQ11_RS05525 PF01926 50S ribosome-binding GTPase CQ11_RS05530 PF02646 RmuC family CQ11_RS05535 PF02401 LytB protein CQ11_RS05540 PF02601 Exonuclease VII, large subunit CQ11_RS05540 PF13742 OB-fold nucleic acid binding domain CQ11_RS05545 PF02609 Exonuclease VII small subunit CQ11_RS05550 PF00294 pfkB family carbohydrate kinase CQ11_RS05555 PF01255 Putative undecaprenyl diphosphate synthase CQ11_RS05560 PF03006 Haemolysin-III related CQ11_RS05565 PF02585 GlcNAc-PI de-N-acetylase CQ11_RS05570 PF03449 Transcription elongation factor, N-terminal CQ11_RS05570 PF01272 Transcription elongation factor, GreA/GreB, C-term CQ11_RS05575 PF01625 Peptide methionine sulfoxide reductase CQ11_RS05590 PF00474 Sodium:solute symporter family CQ11_RS05595 PF00171 Aldehyde dehydrogenase family CQ11_RS05610 PF00005 ABC transporter CQ11_RS05615 PF00392 Bacterial regulatory proteins, gntR family CQ11_RS05625 PF00005 ABC transporter CQ11_RS05640 PF06965 Na+/H+ antiporter 1 CQ11_RS05645 PF02541 Ppx/GppA phosphatase family CQ11_RS05665 PF03952 Enolase, N-terminal domain CQ11_RS05665 PF00113 Enolase, C-terminal TIM barrel domain CQ11_RS05670 PF01156 Inosine-uridine preferring nucleoside hydrolase CQ11_RS05675 PF00271 Helicase conserved C-terminal domain CQ11_RS05675 PF02559 CarD-like/TRCF domain CQ11_RS05675 PF00270 DEAD/DEAH box helicase CQ11_RS05675 PF17757 UvrB interaction domain CQ11_RS05675 PF03461 TRCF domain CQ11_RS05680 PF01195 Peptidyl-tRNA hydrolase CQ11_RS05685 PF01386 Ribosomal L25p family CQ11_RS05685 PF14693 Ribosomal protein TL5, C-terminal domain CQ11_RS05690 PF14572 Phosphoribosyl synthetase-associated domain CQ11_RS05690 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CQ11_RS05695 PF00132 Bacterial transferase hexapeptide (six repeats) CQ11_RS05695 PF12804 MobA-like NTP transferase domain CQ11_RS05705 PF00440 Bacterial regulatory proteins, tetR family CQ11_RS05720 PF13732 Domain of unknown function (DUF4162) CQ11_RS05720 PF00005 ABC transporter CQ11_RS05735 PF12848 ABC transporter CQ11_RS05735 PF16326 ABC transporter C-terminal domain CQ11_RS05735 PF00005 ABC transporter CQ11_RS05740 PF00288 GHMP kinases N terminal domain CQ11_RS05740 PF08544 GHMP kinases C terminal CQ11_RS05745 PF00398 Ribosomal RNA adenine dimethylase CQ11_RS05755 PF01026 TatD related DNase CQ11_RS05760 PF09334 tRNA synthetases class I (M) CQ11_RS05765 PF00665 Integrase core domain CQ11_RS05765 PF13276 HTH-like domain CQ11_RS05790 PF01695 IstB-like ATP binding protein CQ11_RS05805 PF00857 Isochorismatase family CQ11_RS05810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQ11_RS05820 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase CQ11_RS05820 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CQ11_RS05825 PF01053 Cys/Met metabolism PLP-dependent enzyme CQ11_RS05845 PF00005 ABC transporter CQ11_RS05845 PF13732 Domain of unknown function (DUF4162) CQ11_RS05860 PF05175 Methyltransferase small domain CQ11_RS05865 PF02028 BCCT, betaine/carnitine/choline family transporter CQ11_RS05870 PF01594 AI-2E family transporter CQ11_RS05885 PF01336 OB-fold nucleic acid binding domain CQ11_RS05885 PF09924 Uncharacterised conserved protein (DUF2156) CQ11_RS05885 PF00152 tRNA synthetases class II (D, K and N) CQ11_RS05885 PF16995 Transmembrane region of lysyl-tRNA synthetase CQ11_RS05890 PF02652 L-lactate permease CQ11_RS05895 PF02754 Cysteine-rich domain CQ11_RS05900 PF11870 Domain of unknown function (DUF3390) CQ11_RS05900 PF02589 LUD domain CQ11_RS05900 PF13183 4Fe-4S dicluster domain CQ11_RS05905 PF02589 LUD domain CQ11_RS05925 PF00381 PTS HPr component phosphorylation site CQ11_RS05930 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CQ11_RS05935 PF00367 phosphotransferase system, EIIB CQ11_RS05935 PF02378 Phosphotransferase system, EIIC CQ11_RS05955 PF00293 NUDIX domain CQ11_RS05965 PF02896 PEP-utilising enzyme, TIM barrel domain CQ11_RS05965 PF00391 PEP-utilising enzyme, mobile domain CQ11_RS05965 PF05524 PEP-utilising enzyme, N-terminal CQ11_RS05975 PF03123 CAT RNA binding domain CQ11_RS05975 PF00874 PRD domain CQ11_RS05980 PF02378 Phosphotransferase system, EIIC CQ11_RS05980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CQ11_RS05980 PF00367 phosphotransferase system, EIIB CQ11_RS05995 PF00005 ABC transporter CQ11_RS05995 PF00027 Cyclic nucleotide-binding domain CQ11_RS06000 PF05167 Uncharacterised ACR (DUF711) CQ11_RS06010 PF07690 Major Facilitator Superfamily CQ11_RS06020 PF00444 Ribosomal protein L36 CQ11_RS06025 PF01197 Ribosomal protein L31 CQ11_RS06030 PF00253 Ribosomal protein S14p/S29e CQ11_RS06035 PF00471 Ribosomal protein L33 CQ11_RS06040 PF00830 Ribosomal L28 family CQ11_RS06055 PF00083 Sugar (and other) transporter CQ11_RS06060 PF07859 alpha/beta hydrolase fold CQ11_RS06065 PF00392 Bacterial regulatory proteins, gntR family CQ11_RS06065 PF07702 UTRA domain CQ11_RS06070 PF00005 ABC transporter CQ11_RS06075 PF01032 FecCD transport family CQ11_RS06080 PF01032 FecCD transport family CQ11_RS06085 PF01497 Periplasmic binding protein CQ11_RS06100 PF12697 Alpha/beta hydrolase family CQ11_RS06120 PF01381 Helix-turn-helix CQ11_RS06140 PF00994 Probable molybdopterin binding domain CQ11_RS06140 PF03454 MoeA C-terminal region (domain IV) CQ11_RS06140 PF03453 MoeA N-terminal region (domain I and II) CQ11_RS06175 PF00582 Universal stress protein family CQ11_RS06185 PF02742 Iron dependent repressor, metal binding and dimerisation domain CQ11_RS06185 PF18357 Diphteria toxin repressor SH3 domain CQ11_RS06185 PF01325 Iron dependent repressor, N-terminal DNA binding domain CQ11_RS06190 PF00266 Aminotransferase class-V CQ11_RS06195 PF00860 Permease family CQ11_RS06200 PF01238 Phosphomannose isomerase type I CQ11_RS06205 PF11228 Protein of unknown function (DUF3027) CQ11_RS06210 PF00313 'Cold-shock' DNA-binding domain CQ11_RS06220 PF04012 PspA/IM30 family CQ11_RS06230 PF00072 Response regulator receiver domain CQ11_RS06230 PF00486 Transcriptional regulatory protein, C terminal CQ11_RS06235 PF00672 HAMP domain CQ11_RS06235 PF00512 His Kinase A (phospho-acceptor) domain CQ11_RS06235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS06240 PF01553 Acyltransferase CQ11_RS06240 PF00501 AMP-binding enzyme CQ11_RS06245 PF00106 short chain dehydrogenase CQ11_RS06255 PF00118 TCP-1/cpn60 chaperonin family CQ11_RS06270 PF03167 Uracil DNA glycosylase superfamily CQ11_RS06305 PF17912 MalK OB fold domain CQ11_RS06305 PF00005 ABC transporter CQ11_RS06315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_RS06315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_RS06325 PF13416 Bacterial extracellular solute-binding protein CQ11_RS06330 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06335 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06350 PF02774 Semialdehyde dehydrogenase, dimerisation domain CQ11_RS06350 PF01118 Semialdehyde dehydrogenase, NAD binding domain CQ11_RS06355 PF01842 ACT domain CQ11_RS06355 PF13840 ACT domain CQ11_RS06355 PF00696 Amino acid kinase family CQ11_RS06360 PF13662 Toprim domain CQ11_RS06360 PF02132 RecR protein CQ11_RS06365 PF12169 DNA polymerase III subunits gamma and tau domain III CQ11_RS06375 PF02554 Carbon starvation protein CstA CQ11_RS06375 PF13722 5TM C-terminal transporter carbon starvation CstA CQ11_RS06395 PF00860 Permease family CQ11_RS06410 PF00588 SpoU rRNA Methylase family CQ11_RS06410 PF08032 RNA 2'-O ribose methyltransferase substrate binding CQ11_RS06415 PF09190 DALR domain CQ11_RS06415 PF01406 tRNA synthetases class I (C) catalytic domain CQ11_RS06425 PF00005 ABC transporter CQ11_RS06430 PF04198 Putative sugar-binding domain CQ11_RS06440 PF02733 Dak1 domain CQ11_RS06450 PF00596 Class II Aldolase and Adducin N-terminal domain CQ11_RS06455 PF03611 PTS system sugar-specific permease component CQ11_RS06485 PF02542 YgbB family CQ11_RS06490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CQ11_RS06495 PF02559 CarD-like/TRCF domain CQ11_RS06500 PF00486 Transcriptional regulatory protein, C terminal CQ11_RS06500 PF00072 Response regulator receiver domain CQ11_RS06505 PF00512 His Kinase A (phospho-acceptor) domain CQ11_RS06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS06510 PF01895 PhoU domain CQ11_RS06515 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_RS06530 PF00746 LPXTG cell wall anchor motif CQ11_RS06530 PF16555 Gram-positive pilin subunit D1, N-terminal domain CQ11_RS06560 PF00005 ABC transporter CQ11_RS06565 PF01032 FecCD transport family CQ11_RS06580 PF00884 Sulfatase CQ11_RS06585 PF00884 Sulfatase CQ11_RS06595 PF00762 Ferrochelatase CQ11_RS06600 PF00248 Aldo/keto reductase family CQ11_RS06610 PF01487 Type I 3-dehydroquinase CQ11_RS06640 PF17863 AAA lid domain CQ11_RS06640 PF07726 ATPase family associated with various cellular activities (AAA) CQ11_RS06655 PF00155 Aminotransferase class I and II CQ11_RS06660 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CQ11_RS06665 PF00206 Lyase CQ11_RS06665 PF08328 Adenylosuccinate lyase C-terminal CQ11_RS06670 PF09335 SNARE associated Golgi protein CQ11_RS06680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS06680 PF00403 Heavy-metal-associated domain CQ11_RS06680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_RS06685 PF00403 Heavy-metal-associated domain CQ11_RS06695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQ11_RS06695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQ11_RS06695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQ11_RS06695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQ11_RS06700 PF00440 Bacterial regulatory proteins, tetR family CQ11_RS06700 PF17932 Tetracyclin repressor-like, C-terminal domain CQ11_RS06705 PF00005 ABC transporter CQ11_RS06705 PF00664 ABC transporter transmembrane region CQ11_RS06710 PF08021 Siderophore-interacting FAD-binding domain CQ11_RS06710 PF00005 ABC transporter CQ11_RS06710 PF00664 ABC transporter transmembrane region CQ11_RS06710 PF04954 Siderophore-interacting protein CQ11_RS06715 PF00005 ABC transporter CQ11_RS06730 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_RS06730 PF00107 Zinc-binding dehydrogenase CQ11_RS06740 PF07690 Major Facilitator Superfamily CQ11_RS06745 PF00459 Inositol monophosphatase family CQ11_RS06750 PF13407 Periplasmic binding protein domain CQ11_RS06755 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS06760 PF00005 ABC transporter CQ11_RS06765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_RS06765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_RS06770 PF01261 Xylose isomerase-like TIM barrel CQ11_RS06775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_RS06775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_RS06780 PF00923 Transaldolase/Fructose-6-phosphate aldolase CQ11_RS06790 PF00294 pfkB family carbohydrate kinase CQ11_RS06800 PF04962 KduI/IolB family CQ11_RS06805 PF00205 Thiamine pyrophosphate enzyme, central domain CQ11_RS06805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQ11_RS06805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQ11_RS06810 PF00171 Aldehyde dehydrogenase family CQ11_RS06815 PF00005 ABC transporter CQ11_RS06820 PF01032 FecCD transport family CQ11_RS06825 PF01032 FecCD transport family CQ11_RS06830 PF01497 Periplasmic binding protein CQ11_RS06835 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CQ11_RS06835 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQ11_RS06840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQ11_RS06840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQ11_RS06845 PF01547 Bacterial extracellular solute-binding protein CQ11_RS06850 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06855 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06860 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_RS06860 PF00107 Zinc-binding dehydrogenase CQ11_RS06865 PF00155 Aminotransferase class I and II CQ11_RS06870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQ11_RS06875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQ11_RS06875 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CQ11_RS06880 PF03480 Bacterial extracellular solute-binding protein, family 7 CQ11_RS06885 PF02614 Glucuronate isomerase CQ11_RS06900 PF03932 CutC family CQ11_RS06915 PF00480 ROK family CQ11_RS06925 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06930 PF12911 N-terminal TM domain of oligopeptide transport permease C CQ11_RS06930 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_RS06935 PF00005 ABC transporter CQ11_RS06940 PF00480 ROK family CQ11_RS06945 PF00480 ROK family CQ11_RS06955 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06960 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS06965 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain CQ11_RS06965 PF17386 Lacto-N-biose phosphorylase C-terminal domain CQ11_RS06965 PF17385 Lacto-N-biose phosphorylase central domain CQ11_RS06970 PF01636 Phosphotransferase enzyme family CQ11_RS06975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CQ11_RS06975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CQ11_RS07015 PF13614 AAA domain CQ11_RS07025 PF02899 Phage integrase, N-terminal SAM-like domain CQ11_RS07025 PF00589 Phage integrase family CQ11_RS07035 PF00005 ABC transporter CQ11_RS07040 PF04954 Siderophore-interacting protein CQ11_RS07040 PF08021 Siderophore-interacting FAD-binding domain CQ11_RS07040 PF00005 ABC transporter CQ11_RS07040 PF00664 ABC transporter transmembrane region CQ11_RS07045 PF00005 ABC transporter CQ11_RS07050 PF02361 Cobalt transport protein CQ11_RS07065 PF00939 Sodium:sulfate symporter transmembrane region CQ11_RS07085 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CQ11_RS07085 PF01113 Dihydrodipicolinate reductase, N-terminus CQ11_RS07090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQ11_RS07090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQ11_RS07095 PF00005 ABC transporter CQ11_RS07100 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS07105 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS07110 PF13407 Periplasmic binding protein domain CQ11_RS07115 PF04198 Putative sugar-binding domain CQ11_RS07120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_RS07120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_RS07130 PF01791 DeoC/LacD family aldolase CQ11_RS07145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS07150 PF01661 Macro domain CQ11_RS07175 PF13635 Domain of unknown function (DUF4143) CQ11_RS07175 PF13173 AAA domain CQ11_RS07180 PF05958 tRNA (Uracil-5-)-methyltransferase CQ11_RS07185 PF00271 Helicase conserved C-terminal domain CQ11_RS07185 PF04408 Helicase associated domain (HA2) CQ11_RS07185 PF00270 DEAD/DEAH box helicase CQ11_RS07185 PF08482 ATP-dependent helicase C-terminal CQ11_RS07200 PF02386 Cation transport protein CQ11_RS07240 PF00486 Transcriptional regulatory protein, C terminal CQ11_RS07240 PF00072 Response regulator receiver domain CQ11_RS07245 PF01702 Queuine tRNA-ribosyltransferase CQ11_RS07255 PF01712 Deoxynucleoside kinase CQ11_RS07275 PF00585 C-terminal regulatory domain of Threonine dehydratase CQ11_RS07275 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_RS07290 PF00561 alpha/beta hydrolase fold CQ11_RS07295 PF00248 Aldo/keto reductase family CQ11_RS07300 PF08543 Phosphomethylpyrimidine kinase CQ11_RS07310 PF00899 ThiF family CQ11_RS07320 PF07690 Major Facilitator Superfamily CQ11_RS07325 PF03796 DnaB-like helicase C terminal domain CQ11_RS07325 PF00772 DnaB-like helicase N terminal domain CQ11_RS07345 PF01281 Ribosomal protein L9, N-terminal domain CQ11_RS07345 PF03948 Ribosomal protein L9, C-terminal domain CQ11_RS07350 PF01084 Ribosomal protein S18 CQ11_RS07355 PF00436 Single-strand binding protein family CQ11_RS07360 PF01250 Ribosomal protein S6 CQ11_RS07365 PF00905 Penicillin binding protein transpeptidase domain CQ11_RS07365 PF00912 Transglycosylase CQ11_RS07370 PF01594 AI-2E family transporter CQ11_RS07375 PF07690 Major Facilitator Superfamily CQ11_RS07380 PF13735 tRNA nucleotidyltransferase domain 2 putative CQ11_RS07380 PF12627 Probable RNA and SrmB- binding site of polymerase A CQ11_RS07380 PF01743 Poly A polymerase head domain CQ11_RS07385 PF00293 NUDIX domain CQ11_RS07400 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS07405 PF00155 Aminotransferase class I and II CQ11_RS07410 PF01820 D-ala D-ala ligase N-terminus CQ11_RS07410 PF07478 D-ala D-ala ligase C-terminus CQ11_RS07415 PF17762 HTH domain found in ParB protein CQ11_RS07415 PF02195 ParB-like nuclease domain CQ11_RS07420 PF13614 AAA domain CQ11_RS07425 PF02527 rRNA small subunit methyltransferase G CQ11_RS07435 PF02096 60Kd inner membrane protein CQ11_RS07440 PF01809 Putative membrane protein insertion efficiency factor CQ11_RS07445 PF00825 Ribonuclease P CQ11_RS07450 PF00468 Ribosomal protein L34 CQ11_RS07455 PF08299 Bacterial dnaA protein helix-turn-helix CQ11_RS07455 PF00308 Bacterial dnaA protein CQ11_RS07460 PF00712 DNA polymerase III beta subunit, N-terminal domain CQ11_RS07460 PF02767 DNA polymerase III beta subunit, central domain CQ11_RS07460 PF02768 DNA polymerase III beta subunit, C-terminal domain CQ11_RS07465 PF02463 RecF/RecN/SMC N terminal domain CQ11_RS07475 PF00204 DNA gyrase B CQ11_RS07475 PF01751 Toprim domain CQ11_RS07475 PF00986 DNA gyrase B subunit, carboxyl terminus CQ11_RS07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS07480 PF00521 DNA gyrase/topoisomerase IV, subunit A CQ11_RS07480 PF03989 DNA gyrase C-terminal domain, beta-propeller CQ11_RS07485 PF12089 Transmembrane domain of unknown function (DUF3566) CQ11_RS07515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CQ11_RS07520 PF01694 Rhomboid family CQ11_RS07525 PF06781 Cell division protein CrgA CQ11_RS07530 PF04203 Sortase domain CQ11_RS07540 PF00069 Protein kinase domain CQ11_RS07540 PF03793 PASTA domain CQ11_RS07545 PF00905 Penicillin binding protein transpeptidase domain CQ11_RS07550 PF01098 Cell cycle protein CQ11_RS07560 PF16697 Inner membrane component of T3SS, cytoplasmic domain CQ11_RS07565 PF00005 ABC transporter CQ11_RS07565 PF01061 ABC-2 type transporter CQ11_RS07565 PF00498 FHA domain CQ11_RS07575 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CQ11_RS07575 PF00326 Prolyl oligopeptidase family CQ11_RS07585 PF00075 RNase H CQ11_RS07590 PF01661 Macro domain CQ11_RS07600 PF02664 S-Ribosylhomocysteinase (LuxS) CQ11_RS07605 PF01475 Ferric uptake regulator family CQ11_RS07615 PF07972 NrdI Flavodoxin like CQ11_RS07620 PF02867 Ribonucleotide reductase, barrel domain CQ11_RS07620 PF00317 Ribonucleotide reductase, all-alpha domain CQ11_RS07620 PF08343 Ribonucleotide reductase N-terminal CQ11_RS07625 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CQ11_RS07625 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CQ11_RS07635 PF00268 Ribonucleotide reductase, small chain CQ11_RS07655 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS07660 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS07695 PF00271 Helicase conserved C-terminal domain CQ11_RS07695 PF04408 Helicase associated domain (HA2) CQ11_RS07695 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CQ11_RS07695 PF00270 DEAD/DEAH box helicase CQ11_RS07695 PF11898 Domain of unknown function (DUF3418) CQ11_RS07700 PF00072 Response regulator receiver domain CQ11_RS07700 PF00196 Bacterial regulatory proteins, luxR family CQ11_RS07705 PF07730 Histidine kinase CQ11_RS07715 PF00005 ABC transporter CQ11_RS07725 PF00005 ABC transporter CQ11_RS07735 PF00072 Response regulator receiver domain CQ11_RS07735 PF00196 Bacterial regulatory proteins, luxR family CQ11_RS07740 PF01263 Aldose 1-epimerase CQ11_RS07745 PF03477 ATP cone domain CQ11_RS07745 PF13597 Anaerobic ribonucleoside-triphosphate reductase CQ11_RS07755 PF01757 Acyltransferase family CQ11_RS07765 PF00005 ABC transporter CQ11_RS07770 PF09339 IclR helix-turn-helix domain CQ11_RS07770 PF01614 Bacterial transcriptional regulator CQ11_RS07775 PF08125 Mannitol dehydrogenase C-terminal domain CQ11_RS07775 PF01232 Mannitol dehydrogenase Rossmann domain CQ11_RS07780 PF03786 D-mannonate dehydratase (UxuA) CQ11_RS07785 PF01081 KDPG and KHG aldolase CQ11_RS07790 PF00294 pfkB family carbohydrate kinase CQ11_RS07795 PF00005 ABC transporter CQ11_RS07805 PF01032 FecCD transport family CQ11_RS07810 PF00664 ABC transporter transmembrane region CQ11_RS07810 PF00005 ABC transporter CQ11_RS07815 PF00664 ABC transporter transmembrane region CQ11_RS07815 PF00005 ABC transporter CQ11_RS07820 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS07835 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS07840 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS07875 PF01420 Type I restriction modification DNA specificity domain CQ11_RS07880 PF00872 Transposase, Mutator family CQ11_RS07895 PF02384 N-6 DNA Methylase CQ11_RS07895 PF12161 HsdM N-terminal domain CQ11_RS07900 PF08544 GHMP kinases C terminal CQ11_RS07900 PF10509 Galactokinase galactose-binding signature CQ11_RS07900 PF00288 GHMP kinases N terminal domain CQ11_RS07925 PF00005 ABC transporter CQ11_RS07930 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS07935 PF13407 Periplasmic binding protein domain CQ11_RS07940 PF00294 pfkB family carbohydrate kinase CQ11_RS07940 PF01467 Cytidylyltransferase-like CQ11_RS07945 PF11975 Family 4 glycosyl hydrolase C-terminal domain CQ11_RS07945 PF02056 Family 4 glycosyl hydrolase CQ11_RS08015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQ11_RS08015 PF02403 Seryl-tRNA synthetase N-terminal domain CQ11_RS08030 PF00800 Prephenate dehydratase CQ11_RS08030 PF01842 ACT domain CQ11_RS08060 PF14437 MafB19-like deaminase CQ11_RS08070 PF05525 Branched-chain amino acid transport protein CQ11_RS08075 PF08903 Domain of unknown function (DUF1846) CQ11_RS08090 PF00899 ThiF family CQ11_RS08090 PF00581 Rhodanese-like domain CQ11_RS08095 PF16555 Gram-positive pilin subunit D1, N-terminal domain CQ11_RS08095 PF00746 LPXTG cell wall anchor motif CQ11_RS08120 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS08130 PF00994 Probable molybdopterin binding domain CQ11_RS08135 PF00994 Probable molybdopterin binding domain CQ11_RS08135 PF03454 MoeA C-terminal region (domain IV) CQ11_RS08135 PF03453 MoeA N-terminal region (domain I and II) CQ11_RS08140 PF01967 MoaC family CQ11_RS08145 PF02391 MoaE protein CQ11_RS08150 PF06463 Molybdenum Cofactor Synthesis C CQ11_RS08150 PF04055 Radical SAM superfamily CQ11_RS08160 PF00128 Alpha amylase, catalytic domain CQ11_RS08160 PF02903 Alpha amylase, N-terminal ig-like domain CQ11_RS08175 PF00912 Transglycosylase CQ11_RS08175 PF00905 Penicillin binding protein transpeptidase domain CQ11_RS08180 PF02467 Transcription factor WhiB CQ11_RS08195 PF13545 Crp-like helix-turn-helix domain CQ11_RS08195 PF00027 Cyclic nucleotide-binding domain CQ11_RS08200 PF10576 Iron-sulfur binding domain of endonuclease III CQ11_RS08200 PF00633 Helix-hairpin-helix motif CQ11_RS08200 PF00730 HhH-GPD superfamily base excision DNA repair protein CQ11_RS08205 PF00561 alpha/beta hydrolase fold CQ11_RS08220 PF00437 Type II/IV secretion system protein CQ11_RS08245 PF09369 Domain of unknown function (DUF1998) CQ11_RS08245 PF00271 Helicase conserved C-terminal domain CQ11_RS08245 PF00270 DEAD/DEAH box helicase CQ11_RS08250 PF13443 Cro/C1-type HTH DNA-binding domain CQ11_RS08260 PF17827 PrmC N-terminal domain CQ11_RS08260 PF02390 Putative methyltransferase CQ11_RS08260 PF05175 Methyltransferase small domain CQ11_RS08265 PF01131 DNA topoisomerase CQ11_RS08265 PF01751 Toprim domain CQ11_RS08265 PF13368 Topoisomerase C-terminal repeat CQ11_RS08270 PF02223 Thymidylate kinase CQ11_RS08275 PF12169 DNA polymerase III subunits gamma and tau domain III CQ11_RS08280 PF00561 alpha/beta hydrolase fold CQ11_RS08340 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CQ11_RS08345 PF00361 Proton-conducting membrane transporter CQ11_RS08345 PF13244 Domain of unknown function (DUF4040) CQ11_RS08345 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CQ11_RS08345 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQ11_RS08350 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CQ11_RS08355 PF00361 Proton-conducting membrane transporter CQ11_RS08385 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS08390 PF08402 TOBE domain CQ11_RS08390 PF00005 ABC transporter CQ11_RS08400 PF07690 Major Facilitator Superfamily CQ11_RS08405 PF07883 Cupin domain CQ11_RS08445 PF00480 ROK family CQ11_RS08450 PF03649 Uncharacterised protein family (UPF0014) CQ11_RS08460 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CQ11_RS08460 PF00326 Prolyl oligopeptidase family CQ11_RS08470 PF13247 4Fe-4S dicluster domain CQ11_RS08470 PF12800 4Fe-4S binding domain CQ11_RS08475 PF01568 Molydopterin dinucleotide binding domain CQ11_RS08475 PF00384 Molybdopterin oxidoreductase CQ11_RS08475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CQ11_RS08480 PF02583 Metal-sensitive transcriptional repressor CQ11_RS08485 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQ11_RS08485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQ11_RS08495 PF00156 Phosphoribosyl transferase domain CQ11_RS08500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQ11_RS08500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQ11_RS08505 PF01979 Amidohydrolase family CQ11_RS08510 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CQ11_RS08515 PF00156 Phosphoribosyl transferase domain CQ11_RS08520 PF01180 Dihydroorotate dehydrogenase CQ11_RS08525 PF00012 Hsp70 protein CQ11_RS08530 PF01025 GrpE CQ11_RS08535 PF01556 DnaJ C terminal domain CQ11_RS08535 PF00226 DnaJ domain CQ11_RS08535 PF00684 DnaJ central domain CQ11_RS08540 PF13411 MerR HTH family regulatory protein CQ11_RS08545 PF00293 NUDIX domain CQ11_RS08560 PF03009 Glycerophosphoryl diester phosphodiesterase family CQ11_RS08565 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CQ11_RS08565 PF07676 WD40-like Beta Propeller Repeat CQ11_RS08565 PF00326 Prolyl oligopeptidase family CQ11_RS08575 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQ11_RS08585 PF10431 C-terminal, D2-small domain, of ClpB protein CQ11_RS08585 PF07724 AAA domain (Cdc48 subfamily) CQ11_RS08585 PF17871 AAA lid domain CQ11_RS08585 PF02861 Clp amino terminal domain, pathogenicity island component CQ11_RS08585 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_RS08625 PF01384 Phosphate transporter family CQ11_RS08630 PF01116 Fructose-bisphosphate aldolase class-II CQ11_RS08640 PF00709 Adenylosuccinate synthetase CQ11_RS08645 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CQ11_RS08645 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CQ11_RS08650 PF01259 SAICAR synthetase CQ11_RS08655 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CQ11_RS08655 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQ11_RS08685 PF02028 BCCT, betaine/carnitine/choline family transporter CQ11_RS08700 PF13519 von Willebrand factor type A domain CQ11_RS08720 PF00056 lactate/malate dehydrogenase, NAD binding domain CQ11_RS08720 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CQ11_RS08725 PF03023 Lipid II flippase MurJ CQ11_RS08750 PF01641 SelR domain CQ11_RS08775 PF13089 Polyphosphate kinase N-terminal domain CQ11_RS08775 PF02503 Polyphosphate kinase middle domain CQ11_RS08775 PF13090 Polyphosphate kinase C-terminal domain 2 CQ11_RS08775 PF17941 Polyphosphate kinase C-terminal domain 1 CQ11_RS08780 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_RS08780 PF00293 NUDIX domain CQ11_RS08785 PF12849 PBP superfamily domain CQ11_RS08790 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS08795 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS08800 PF00005 ABC transporter CQ11_RS08805 PF01384 Phosphate transporter family CQ11_RS08815 PF01235 Sodium:alanine symporter family CQ11_RS08825 PF00149 Calcineurin-like phosphoesterase CQ11_RS08825 PF02872 5'-nucleotidase, C-terminal domain CQ11_RS08835 PF08768 Domain of unknown function (DUF1794) CQ11_RS08840 PF01571 Aminomethyltransferase folate-binding domain CQ11_RS08850 PF02580 D-Tyr-tRNA(Tyr) deacylase CQ11_RS08855 PF02861 Clp amino terminal domain, pathogenicity island component CQ11_RS08855 PF07724 AAA domain (Cdc48 subfamily) CQ11_RS08855 PF17871 AAA lid domain CQ11_RS08855 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_RS08855 PF10431 C-terminal, D2-small domain, of ClpB protein CQ11_RS08860 PF00294 pfkB family carbohydrate kinase CQ11_RS08870 PF07690 Major Facilitator Superfamily CQ11_RS08875 PF04198 Putative sugar-binding domain CQ11_RS08890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_RS08890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_RS08905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_RS08905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_RS08910 PF00596 Class II Aldolase and Adducin N-terminal domain CQ11_RS08915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_RS08915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_RS08920 PF02733 Dak1 domain CQ11_RS08920 PF02734 DAK2 domain CQ11_RS08925 PF00107 Zinc-binding dehydrogenase CQ11_RS08925 PF08240 Alcohol dehydrogenase GroES-like domain CQ11_RS08930 PF02502 Ribose/Galactose Isomerase CQ11_RS08935 PF01925 Sulfite exporter TauE/SafE CQ11_RS08940 PF04055 Radical SAM superfamily CQ11_RS08940 PF13186 Iron-sulfur cluster-binding domain CQ11_RS08945 PF00083 Sugar (and other) transporter CQ11_RS08955 PF00884 Sulfatase CQ11_RS08970 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS08975 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS08985 PF01055 Glycosyl hydrolases family 31 CQ11_RS08985 PF13802 Galactose mutarotase-like CQ11_RS08990 PF00455 DeoR C terminal sensor domain CQ11_RS08990 PF08220 DeoR-like helix-turn-helix domain CQ11_RS09000 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09005 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09010 PF01116 Fructose-bisphosphate aldolase class-II CQ11_RS09030 PF01261 Xylose isomerase-like TIM barrel CQ11_RS09035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_RS09035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_RS09040 PF13407 Periplasmic binding protein domain CQ11_RS09045 PF00005 ABC transporter CQ11_RS09050 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS09055 PF00155 Aminotransferase class I and II CQ11_RS09060 PF03553 Na+/H+ antiporter family CQ11_RS09070 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_RS09070 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_RS09070 PF00703 Glycosyl hydrolases family 2 CQ11_RS09070 PF16353 Domain of unknown function(DUF4981) CQ11_RS09070 PF02929 Beta galactosidase small chain CQ11_RS09075 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09080 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09090 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS09100 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09105 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09125 PF02929 Beta galactosidase small chain CQ11_RS09125 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_RS09125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_RS09125 PF00703 Glycosyl hydrolases family 2 CQ11_RS09125 PF16353 Domain of unknown function(DUF4981) CQ11_RS09135 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS09140 PF02447 GntP family permease CQ11_RS09150 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CQ11_RS09150 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQ11_RS09165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CQ11_RS09165 PF00703 Glycosyl hydrolases family 2 CQ11_RS09165 PF16355 Domain of unknown function (DUF4982) CQ11_RS09165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_RS09165 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_RS09170 PF05025 RbsD / FucU transport protein family CQ11_RS09175 PF00294 pfkB family carbohydrate kinase CQ11_RS09175 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CQ11_RS09180 PF13407 Periplasmic binding protein domain CQ11_RS09185 PF02653 Branched-chain amino acid transport system / permease component CQ11_RS09190 PF00005 ABC transporter CQ11_RS09195 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS09200 PF13649 Methyltransferase domain CQ11_RS09205 PF00005 ABC transporter CQ11_RS09220 PF02872 5'-nucleotidase, C-terminal domain CQ11_RS09220 PF00149 Calcineurin-like phosphoesterase CQ11_RS09230 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS09235 PF00083 Sugar (and other) transporter CQ11_RS09240 PF02308 MgtC family CQ11_RS09250 PF09370 Phosphoenolpyruvate hydrolase-like CQ11_RS09260 PF00155 Aminotransferase class I and II CQ11_RS09270 PF03747 ADP-ribosylglycohydrolase CQ11_RS09275 PF02361 Cobalt transport protein CQ11_RS09280 PF00005 ABC transporter CQ11_RS09305 PF00005 ABC transporter CQ11_RS09360 PF18395 Cas3 C-terminal domain CQ11_RS09360 PF00270 DEAD/DEAH box helicase CQ11_RS09360 PF18019 HD domain CQ11_RS09390 PF01867 CRISPR associated protein Cas1 CQ11_RS09400 PF01381 Helix-turn-helix CQ11_RS09405 PF00128 Alpha amylase, catalytic domain CQ11_RS09410 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09415 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09430 PF00391 PEP-utilising enzyme, mobile domain CQ11_RS09430 PF02896 PEP-utilising enzyme, TIM barrel domain CQ11_RS09430 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CQ11_RS09435 PF13183 4Fe-4S dicluster domain CQ11_RS09435 PF01565 FAD binding domain CQ11_RS09435 PF02913 FAD linked oxidases, C-terminal domain CQ11_RS09445 PF12146 Serine aminopeptidase, S33 CQ11_RS09450 PF00561 alpha/beta hydrolase fold CQ11_RS09460 PF00719 Inorganic pyrophosphatase CQ11_RS09465 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CQ11_RS09475 PF01171 PP-loop family CQ11_RS09475 PF09179 TilS substrate binding domain CQ11_RS09480 PF00156 Phosphoribosyl transferase domain CQ11_RS09485 PF01434 Peptidase family M41 CQ11_RS09485 PF17862 AAA+ lid domain CQ11_RS09485 PF00004 ATPase family associated with various cellular activities (AAA) CQ11_RS09490 PF01227 GTP cyclohydrolase I CQ11_RS09495 PF00809 Pterin binding enzyme CQ11_RS09500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CQ11_RS09520 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS09525 PF13416 Bacterial extracellular solute-binding protein CQ11_RS09530 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09535 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09540 PF00703 Glycosyl hydrolases family 2 CQ11_RS09540 PF02837 Glycosyl hydrolases family 2, sugar binding domain CQ11_RS09540 PF16353 Domain of unknown function(DUF4981) CQ11_RS09540 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CQ11_RS09540 PF02929 Beta galactosidase small chain CQ11_RS09550 PF00381 PTS HPr component phosphorylation site CQ11_RS09550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CQ11_RS09550 PF00391 PEP-utilising enzyme, mobile domain CQ11_RS09550 PF02896 PEP-utilising enzyme, TIM barrel domain CQ11_RS09550 PF05524 PEP-utilising enzyme, N-terminal CQ11_RS09555 PF02734 DAK2 domain CQ11_RS09560 PF02733 Dak1 domain CQ11_RS09570 PF02569 Pantoate-beta-alanine ligase CQ11_RS09575 PF02261 Aspartate decarboxylase CQ11_RS09585 PF01336 OB-fold nucleic acid binding domain CQ11_RS09585 PF00152 tRNA synthetases class II (D, K and N) CQ11_RS09590 PF03176 MMPL family CQ11_RS09595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQ11_RS09595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQ11_RS09600 PF00230 Major intrinsic protein CQ11_RS09610 PF08450 SMP-30/Gluconolactonase/LRE-like region CQ11_RS09615 PF02754 Cysteine-rich domain CQ11_RS09615 PF13183 4Fe-4S dicluster domain CQ11_RS09620 PF00890 FAD binding domain CQ11_RS09625 PF04324 BFD-like [2Fe-2S] binding domain CQ11_RS09625 PF01266 FAD dependent oxidoreductase CQ11_RS09640 PF10576 Iron-sulfur binding domain of endonuclease III CQ11_RS09640 PF00633 Helix-hairpin-helix motif CQ11_RS09640 PF00730 HhH-GPD superfamily base excision DNA repair protein CQ11_RS09650 PF06745 KaiC CQ11_RS09650 PF18073 Rubredoxin metal binding domain CQ11_RS09655 PF02254 TrkA-N domain CQ11_RS09655 PF02080 TrkA-C domain CQ11_RS09660 PF02386 Cation transport protein CQ11_RS09665 PF12728 Helix-turn-helix domain CQ11_RS09670 PF01047 MarR family CQ11_RS09675 PF00300 Histidine phosphatase superfamily (branch 1) CQ11_RS09685 PF01040 UbiA prenyltransferase family CQ11_RS09690 PF13193 AMP-binding enzyme C-terminal domain CQ11_RS09690 PF00501 AMP-binding enzyme CQ11_RS09700 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09705 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09715 PF00378 Enoyl-CoA hydratase/isomerase CQ11_RS09720 PF13378 Enolase C-terminal domain-like CQ11_RS09720 PF18374 Enolase N-terminal domain-like CQ11_RS09725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQ11_RS09725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQ11_RS09730 PF13180 PDZ domain CQ11_RS09735 PF00425 chorismate binding enzyme CQ11_RS09740 PF01209 ubiE/COQ5 methyltransferase family CQ11_RS09745 PF01494 FAD binding domain CQ11_RS09750 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CQ11_RS09755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CQ11_RS09760 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CQ11_RS09765 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CQ11_RS09775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CQ11_RS09775 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CQ11_RS09775 PF10531 SLBB domain CQ11_RS09780 PF00384 Molybdopterin oxidoreductase CQ11_RS09780 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CQ11_RS09780 PF01568 Molydopterin dinucleotide binding domain CQ11_RS09785 PF00146 NADH dehydrogenase CQ11_RS09790 PF12838 4Fe-4S dicluster domain CQ11_RS09795 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CQ11_RS09800 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CQ11_RS09805 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQ11_RS09805 PF00361 Proton-conducting membrane transporter CQ11_RS09810 PF00361 Proton-conducting membrane transporter CQ11_RS09815 PF00361 Proton-conducting membrane transporter CQ11_RS09820 PF00348 Polyprenyl synthetase CQ11_RS09825 PF07516 SecA Wing and Scaffold domain CQ11_RS09825 PF01043 SecA preprotein cross-linking domain CQ11_RS09825 PF07517 SecA DEAD-like domain CQ11_RS09865 PF13476 AAA domain CQ11_RS09870 PF00149 Calcineurin-like phosphoesterase CQ11_RS09870 PF12320 Type 5 capsule protein repressor C-terminal domain CQ11_RS09875 PF00459 Inositol monophosphatase family CQ11_RS09880 PF03193 RsgA GTPase CQ11_RS09885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CQ11_RS09915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQ11_RS09920 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS09925 PF00005 ABC transporter CQ11_RS09925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_RS09930 PF00005 ABC transporter CQ11_RS09930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQ11_RS09935 PF00701 Dihydrodipicolinate synthetase family CQ11_RS09940 PF00480 ROK family CQ11_RS09945 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CQ11_RS09950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CQ11_RS09955 PF01979 Amidohydrolase family CQ11_RS09960 PF04542 Sigma-70 region 2 CQ11_RS09960 PF08281 Sigma-70, region 4 CQ11_RS09990 PF01476 LysM domain CQ11_RS09990 PF08239 Bacterial SH3 domain CQ11_RS09990 PF00877 NlpC/P60 family CQ11_RS10000 PF16870 2-oxoglutarate dehydrogenase C-terminal CQ11_RS10000 PF00676 Dehydrogenase E1 component CQ11_RS10000 PF16078 2-oxoglutarate dehydrogenase N-terminus CQ11_RS10000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CQ11_RS10000 PF02779 Transketolase, pyrimidine binding domain CQ11_RS10005 PF01595 Cyclin M transmembrane N-terminal domain CQ11_RS10005 PF03471 Transporter associated domain CQ11_RS10005 PF00571 CBS domain CQ11_RS10010 PF01595 Cyclin M transmembrane N-terminal domain CQ11_RS10010 PF00571 CBS domain CQ11_RS10020 PF03009 Glycerophosphoryl diester phosphodiesterase family CQ11_RS10035 PF00005 ABC transporter CQ11_RS10060 PF05746 DALR anticodon binding domain CQ11_RS10060 PF03485 Arginyl tRNA synthetase N terminal domain CQ11_RS10060 PF00750 tRNA synthetases class I (R) CQ11_RS10065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CQ11_RS10065 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CQ11_RS10070 PF00742 Homoserine dehydrogenase CQ11_RS10070 PF03447 Homoserine dehydrogenase, NAD binding domain CQ11_RS10070 PF01842 ACT domain CQ11_RS10075 PF00291 Pyridoxal-phosphate dependent enzyme CQ11_RS10080 PF00288 GHMP kinases N terminal domain CQ11_RS10085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQ11_RS10085 PF07498 Rho termination factor, N-terminal domain CQ11_RS10085 PF07497 Rho termination factor, RNA-binding domain CQ11_RS10090 PF01197 Ribosomal protein L31 CQ11_RS10095 PF00472 RF-1 domain CQ11_RS10095 PF03462 PCRF domain CQ11_RS10100 PF17827 PrmC N-terminal domain CQ11_RS10105 PF01300 Telomere recombination CQ11_RS10110 PF00953 Glycosyl transferase family 4 CQ11_RS10115 PF00119 ATP synthase A chain CQ11_RS10120 PF00137 ATP synthase subunit C CQ11_RS10125 PF00430 ATP synthase B/B' CF(0) CQ11_RS10135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQ11_RS10135 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQ11_RS10135 PF00306 ATP synthase alpha/beta chain, C terminal domain CQ11_RS10140 PF00231 ATP synthase CQ11_RS10145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQ11_RS10145 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQ11_RS10150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CQ11_RS10150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CQ11_RS10160 PF01939 Endonuclease NucS CQ11_RS10200 PF16657 Maltogenic Amylase, C-terminal domain CQ11_RS10200 PF00128 Alpha amylase, catalytic domain CQ11_RS10205 PF00356 Bacterial regulatory proteins, lacI family CQ11_RS10215 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS10215 PF14785 Maltose transport system permease protein MalF P2 domain CQ11_RS10220 PF00528 Binding-protein-dependent transport system inner membrane component CQ11_RS10230 PF00128 Alpha amylase, catalytic domain CQ11_RS10230 PF02806 Alpha amylase, C-terminal all-beta domain CQ11_RS10230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_RS10235 PF18085 Maltokinase N-terminal cap domain CQ11_RS10235 PF01636 Phosphotransferase enzyme family CQ11_RS10240 PF00128 Alpha amylase, catalytic domain CQ11_RS10240 PF16657 Maltogenic Amylase, C-terminal domain CQ11_RS10245 PF00128 Alpha amylase, catalytic domain CQ11_RS10245 PF11896 Domain of unknown function (DUF3416) CQ11_RS10255 PF00005 ABC transporter CQ11_RS10270 PF07885 Ion channel CQ11_RS10275 PF00343 Carbohydrate phosphorylase CQ11_RS10280 PF00579 tRNA synthetases class I (W and Y) CQ11_RS10285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQ11_RS10285 PF00128 Alpha amylase, catalytic domain CQ11_RS10290 PF09297 NADH pyrophosphatase zinc ribbon domain CQ11_RS10290 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CQ11_RS10290 PF00293 NUDIX domain CQ11_RS10295 PF00570 HRDC domain CQ11_RS10295 PF13361 UvrD-like helicase C-terminal domain CQ11_RS10295 PF00580 UvrD/REP helicase N-terminal domain CQ11_RS10310 PF05362 Lon protease (S16) C-terminal proteolytic domain CQ11_RS10310 PF13180 PDZ domain CQ11_RS10320 PF03699 Uncharacterised protein family (UPF0182) CQ11_RS10345 PF00392 Bacterial regulatory proteins, gntR family CQ11_RS10345 PF00155 Aminotransferase class I and II CQ11_RS10350 PF00005 ABC transporter CQ11_RS10360 PF01699 Sodium/calcium exchanger protein CQ11_RS10370 PF02910 Fumarate reductase flavoprotein C-term CQ11_RS10370 PF00890 FAD binding domain CQ11_RS10390 PF00186 Dihydrofolate reductase CQ11_RS10395 PF00303 Thymidylate synthase CQ11_RS10405 PF12282 Signal transduction histidine kinase CQ11_RS10405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS10405 PF07568 Histidine kinase CQ11_RS10410 PF02467 Transcription factor WhiB CQ11_RS10420 PF00005 ABC transporter CQ11_RS10420 PF12704 MacB-like periplasmic core domain CQ11_RS10420 PF02687 FtsX-like permease family CQ11_RS10425 PF00196 Bacterial regulatory proteins, luxR family CQ11_RS10425 PF00072 Response regulator receiver domain CQ11_RS10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQ11_RS10430 PF07730 Histidine kinase CQ11_RS10435 PF02586 SOS response associated peptidase (SRAP) CQ11_RS10440 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CQ11_RS10440 PF03120 NAD-dependent DNA ligase OB-fold domain CQ11_RS10440 PF01653 NAD-dependent DNA ligase adenylation domain CQ11_RS10440 PF00533 BRCA1 C Terminus (BRCT) domain CQ11_RS10440 PF12826 Helix-hairpin-helix motif CQ11_RS10445 PF00392 Bacterial regulatory proteins, gntR family CQ11_RS10445 PF07702 UTRA domain CQ11_RS10450 PF03747 ADP-ribosylglycohydrolase CQ11_RS10460 PF00294 pfkB family carbohydrate kinase CQ11_RS10465 PF13784 Fic/DOC family N-terminal CQ11_RS10465 PF02661 Fic/DOC family CQ11_RS10475 PF13396 Phospholipase_D-nuclease N-terminal CQ11_RS10475 PF13091 PLD-like domain CQ11_RS10480 PF02686 Glu-tRNAGln amidotransferase C subunit CQ11_RS10485 PF01425 Amidase CQ11_RS10490 PF02637 GatB domain CQ11_RS10490 PF02934 GatB/GatE catalytic domain CQ11_RS10495 PF00390 Malic enzyme, N-terminal domain CQ11_RS10495 PF03949 Malic enzyme, NAD binding domain CQ11_RS10525 PF01121 Dephospho-CoA kinase CQ11_RS10530 PF00781 Diacylglycerol kinase catalytic domain CQ11_RS10585 PF12419 SNF2 Helicase protein CQ11_RS10585 PF00176 SNF2 family N-terminal domain CQ11_RS10585 PF00271 Helicase conserved C-terminal domain CQ11_RS10595 PF13191 AAA ATPase domain CQ11_RS10595 PF00069 Protein kinase domain CQ11_RS10615 PF07729 FCD domain CQ11_RS10615 PF00392 Bacterial regulatory proteins, gntR family CQ11_RS10640 PF01420 Type I restriction modification DNA specificity domain CQ11_RS10645 PF06800 Sugar transport protein CQ11_RS10660 PF00440 Bacterial regulatory proteins, tetR family CQ11_RS10670 PF13088 BNR repeat-like domain CQ11_RS10670 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase CQ11_RS10670 PF00754 F5/8 type C domain CQ11_RS10680 PF13419 Haloacid dehalogenase-like hydrolase CQ11_RS10700 PF00534 Glycosyl transferases group 1 CQ11_RS10700 PF00535 Glycosyl transferase family 2 CQ11_RS10745 PF00877 NlpC/P60 family CQ11_RS10745 PF01476 LysM domain CQ11_RS10750 PF00400 WD domain, G-beta repeat CQ11_RS10750 PF00069 Protein kinase domain CQ11_RS10790 PF01048 Phosphorylase superfamily CQ11_RS10800 PF00722 Glycosyl hydrolases family 16 CQ11_RS10845 PF17802 Prealbumin-like fold domain CQ11_RS10845 PF05737 Collagen binding domain CQ11_RS10845 PF05738 Cna protein B-type domain CQ11_RS10850 PF05573 NosL CQ11_RS10850 PF08220 DeoR-like helix-turn-helix domain CQ11_RS10860 PF07691 PA14 domain CQ11_RS10860 PF00728 Glycosyl hydrolase family 20, catalytic domain CQ11_RS10860 PF02838 Glycosyl hydrolase family 20, domain 2 CQ11_RS10875 PF00877 NlpC/P60 family CQ11_RS10895 PF07859 alpha/beta hydrolase fold CQ11_RS10900 PF00202 Aminotransferase class-III CQ11_RS10910 PF01551 Peptidase family M23 CQ11_RS10920 PF00213 ATP synthase delta (OSCP) subunit CQ11_RS10930 PF12905 Endo-alpha-N-acetylgalactosaminidase CQ11_RS10930 PF17974 Galactose-binding domain-like CQ11_RS10930 PF08305 NPCBM/NEW2 domain CQ11_RS10930 PF17451 Glycosyl hydrolase 101 beta sandwich domain CQ11_RS10930 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase CQ11_RS10930 PF18080 Galactose mutarotase-like fold domain CQ11_RS10940 PF04151 Bacterial pre-peptidase C-terminal domain CQ11_RS10940 PF00082 Subtilase family