CQ11_RS00030 SM00363 S4 RNA-binding domain CQ11_RS00085 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00105 SM00450 Rhodanese Homology Domain CQ11_RS00110 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00115 SM00855 Phosphoglycerate mutase family CQ11_RS00135 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00150 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00160 SM00244 prohibitin homologues CQ11_RS00200 SM00481 DNA polymerase alpha chain like domain CQ11_RS00270 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00330 SM00448 cheY-homologous receiver domain CQ11_RS00330 SM01012 CQ11_RS00330 CQ11_RS00340 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CQ11_RS00340 SM00474 3'-5' exonuclease CQ11_RS00340 SM00475 5'-3' exonuclease CQ11_RS00340 SM00482 DNA polymerase A domain CQ11_RS00345 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_RS00360 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00375 SM00487 DEAD-like helicases superfamily CQ11_RS00375 SM00490 helicase superfamily c-terminal domain CQ11_RS00400 SM00465 GIY-YIG type nucleases (URI domain) CQ11_RS00420 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQ11_RS00455 SM00861 Transketolase, pyrimidine binding domain CQ11_RS00480 SM00363 S4 RNA-binding domain CQ11_RS00490 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00510 SM00240 Forkhead associated domain CQ11_RS00515 SM00422 helix_turn_helix, mercury resistance CQ11_RS00520 SM00422 helix_turn_helix, mercury resistance CQ11_RS00545 SM00487 DEAD-like helicases superfamily CQ11_RS00545 SM00490 helicase superfamily c-terminal domain CQ11_RS00545 SM01142 CQ11_RS00545 CQ11_RS00585 SM00062 Bacterial periplasmic substrate-binding proteins CQ11_RS00625 SM01409 CQ11_RS00625 CQ11_RS00630 SM00072 Guanylate kinase homologues. CQ11_RS00640 SM00851 MGS-like domain CQ11_RS00640 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CQ11_RS00645 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CQ11_RS00655 SM00841 Elongation factor P, C-terminal CQ11_RS00655 SM01185 CQ11_RS00655 CQ11_RS00695 SM00732 Likely ribonuclease with RNase H fold. CQ11_RS00700 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_RS00710 SM00363 S4 RNA-binding domain CQ11_RS00710 SM01390 CQ11_RS00710 CQ11_RS00715 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00745 SM00487 DEAD-like helicases superfamily CQ11_RS00745 SM00490 helicase superfamily c-terminal domain CQ11_RS00770 SM00849 Metallo-beta-lactamase superfamily CQ11_RS00785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_RS00785 SM00954 Region found in RelA / SpoT proteins CQ11_RS00810 SM00382 ATPases associated with a variety of cellular activities CQ11_RS00815 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQ11_RS00855 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQ11_RS00865 SM00421 helix_turn_helix, Lux Regulon CQ11_RS00865 SM00448 cheY-homologous receiver domain CQ11_RS00905 SM00642 Alpha-amylase domain CQ11_RS00910 SM00642 Alpha-amylase domain CQ11_RS00915 SM00642 Alpha-amylase domain CQ11_RS00925 SM00341 Helicase and RNase D C-terminal CQ11_RS00925 SM00474 3'-5' exonuclease CQ11_RS00930 SM00861 Transketolase, pyrimidine binding domain CQ11_RS00935 SM00191 Integrin alpha (beta-propellor repeats). CQ11_RS01000 SM00434 DNA Topoisomerase IV CQ11_RS01015 SM00387 Histidine kinase-like ATPases CQ11_RS01015 SM00433 TopoisomeraseII CQ11_RS01025 SM00479 CQ11_RS01025 CQ11_RS01055 SM00257 Lysin motif CQ11_RS01060 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_RS01060 SM00740 CQ11_RS01060 CQ11_RS01080 SM00465 GIY-YIG type nucleases (URI domain) CQ11_RS01080 SM00479 CQ11_RS01080 CQ11_RS01160 SM01230 CQ11_RS01160 CQ11_RS01165 SM00855 Phosphoglycerate mutase family CQ11_RS01175 SM01230 CQ11_RS01175 CQ11_RS01250 SM00382 ATPases associated with a variety of cellular activities CQ11_RS01255 SM00382 ATPases associated with a variety of cellular activities CQ11_RS01430 SM00382 ATPases associated with a variety of cellular activities CQ11_RS01485 SM00400 zinc finger CQ11_RS01485 SM00493 CQ11_RS01485 CQ11_RS01490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_RS01520 SM00382 ATPases associated with a variety of cellular activities CQ11_RS01545 SM00481 DNA polymerase alpha chain like domain CQ11_RS01555 SM00363 S4 RNA-binding domain CQ11_RS01585 SM00864 Tubulin/FtsZ family, GTPase domain CQ11_RS01585 SM00865 Tubulin/FtsZ family, C-terminal domain CQ11_RS01690 SM00257 Lysin motif CQ11_RS01700 SM00491 CQ11_RS01700 CQ11_RS01720 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_RS01730 SM00382 ATPases associated with a variety of cellular activities CQ11_RS01740 SM00530 Helix-turn-helix XRE-family like proteins CQ11_RS01755 SM00854 Bacterial capsule synthesis protein PGA_cap CQ11_RS01760 SM00843 CQ11_RS01760 CQ11_RS01765 SM00849 Metallo-beta-lactamase superfamily CQ11_RS01770 SM01130 CQ11_RS01770 CQ11_RS01800 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_RS01800 SM00322 K homology RNA-binding domain CQ11_RS01805 SM01387 CQ11_RS01805 CQ11_RS01825 SM00904 Riboflavin kinase CQ11_RS01845 SM00382 ATPases associated with a variety of cellular activities CQ11_RS01860 SM00448 cheY-homologous receiver domain CQ11_RS01860 SM00862 Transcriptional regulatory protein, C terminal CQ11_RS01865 SM00387 Histidine kinase-like ATPases CQ11_RS01865 SM00388 His Kinase A (phosphoacceptor) domain CQ11_RS01885 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_RS01950 SM00363 S4 RNA-binding domain CQ11_RS01975 SM00893 Electron transfer flavoprotein domain CQ11_RS02010 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02080 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02080 SM00962 SRP54-type protein, GTPase domain CQ11_RS02080 SM00963 SRP54-type protein, helical bundle domain CQ11_RS02085 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02085 SM00962 SRP54-type protein, GTPase domain CQ11_RS02085 SM00963 SRP54-type protein, helical bundle domain CQ11_RS02100 SM00968 SMC proteins Flexible Hinge Domain CQ11_RS02105 SM00562 CQ11_RS02105 CQ11_RS02150 SM00830 Chorismate mutase type II CQ11_RS02155 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02155 SM00994 ClpX C4-type zinc finger CQ11_RS02155 SM01086 C-terminal, D2-small domain, of ClpB protein CQ11_RS02200 SM00354 helix_turn _helix lactose operon repressor CQ11_RS02300 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02325 SM00479 CQ11_RS02325 CQ11_RS02410 SM00487 DEAD-like helicases superfamily CQ11_RS02410 SM00490 helicase superfamily c-terminal domain CQ11_RS02515 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02530 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02540 SM00530 Helix-turn-helix XRE-family like proteins CQ11_RS02580 SM00873 B3/4 domain CQ11_RS02580 SM00874 tRNA synthetase B5 domain CQ11_RS02580 SM00896 Ferredoxin-fold anticodon binding domain CQ11_RS02595 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQ11_RS02665 SM00917 LeuA allosteric (dimerisation) domain CQ11_RS02680 SM00331 Sigma factor PP2C-like phosphatases CQ11_RS02680 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQ11_RS02695 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_RS02695 SM01091 Transporter associated domain CQ11_RS02715 SM00271 DnaJ molecular chaperone homology domain CQ11_RS02735 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_RS02745 SM00838 Elongation factor G C-terminus CQ11_RS02780 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CQ11_RS02780 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CQ11_RS02790 SM00849 Metallo-beta-lactamase superfamily CQ11_RS02825 SM00756 CQ11_RS02825 CQ11_RS02845 SM00529 Helix-turn-helix diphteria tox regulatory element CQ11_RS02845 SM00899 CQ11_RS02845 CQ11_RS02860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQ11_RS02880 SM00382 ATPases associated with a variety of cellular activities CQ11_RS02900 SM00014 Acid phosphatase homologues CQ11_RS02910 SM00530 Helix-turn-helix XRE-family like proteins CQ11_RS02935 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS03050 SM00354 helix_turn _helix lactose operon repressor CQ11_RS03065 SM01007 Class II Aldolase and Adducin N-terminal domain CQ11_RS03100 SM00857 Resolvase, N terminal domain CQ11_RS03120 SM00644 CQ11_RS03120 CQ11_RS03120 SM01095 Cpl-7 lysozyme C-terminal domain CQ11_RS03250 SM00470 ParB-like nuclease domain CQ11_RS03280 SM00507 HNH nucleases CQ11_RS03290 SM00487 DEAD-like helicases superfamily CQ11_RS03295 SM00990 CQ11_RS03295 CQ11_RS03300 SM00885 D5 N terminal like CQ11_RS03300 SM00942 Primase C terminal 1 (PriCT-1) CQ11_RS03310 SM01040 BRO family, N-terminal domain CQ11_RS03325 SM00482 DNA polymerase A domain CQ11_RS03385 SM00487 DEAD-like helicases superfamily CQ11_RS03385 SM00490 helicase superfamily c-terminal domain CQ11_RS03410 SM00855 Phosphoglycerate mutase family CQ11_RS03455 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_RS03470 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03475 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQ11_RS03485 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03490 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03505 SM00421 helix_turn_helix, Lux Regulon CQ11_RS03505 SM00448 cheY-homologous receiver domain CQ11_RS03510 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CQ11_RS03510 SM01232 CQ11_RS03510 CQ11_RS03515 SM00358 Double-stranded RNA binding motif CQ11_RS03515 SM00535 Ribonuclease III family CQ11_RS03540 SM00487 DEAD-like helicases superfamily CQ11_RS03540 SM00490 helicase superfamily c-terminal domain CQ11_RS03585 SM00346 helix_turn_helix isocitrate lyase regulation CQ11_RS03645 SM00354 helix_turn _helix lactose operon repressor CQ11_RS03730 SM00487 DEAD-like helicases superfamily CQ11_RS03740 SM00411 bacterial (prokaryotic) histone like domain CQ11_RS03800 SM00347 helix_turn_helix multiple antibiotic resistance protein CQ11_RS03805 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03850 SM00382 ATPases associated with a variety of cellular activities CQ11_RS03855 SM00937 CQ11_RS03855 CQ11_RS03915 SM00487 DEAD-like helicases superfamily CQ11_RS03915 SM00490 helicase superfamily c-terminal domain CQ11_RS03925 SM00481 DNA polymerase alpha chain like domain CQ11_RS03930 SM01011 Aminopeptidase P, N-terminal domain CQ11_RS03935 SM00924 MgtE intracellular N domain CQ11_RS03980 SM01133 CQ11_RS03980 CQ11_RS03990 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CQ11_RS04010 SM00382 ATPases associated with a variety of cellular activities CQ11_RS04060 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CQ11_RS04070 SM00878 Biotin carboxylase C-terminal domain CQ11_RS04100 SM00893 Electron transfer flavoprotein domain CQ11_RS04110 SM00849 Metallo-beta-lactamase superfamily CQ11_RS04165 SM00020 Trypsin-like serine protease CQ11_RS04190 SM00798 AICARFT/IMPCHase bienzyme CQ11_RS04190 SM00851 MGS-like domain CQ11_RS04205 SM00881 CoA binding domain CQ11_RS04245 SM00889 Elongation factor G, domain IV CQ11_RS04255 SM00382 ATPases associated with a variety of cellular activities CQ11_RS04275 SM00530 Helix-turn-helix XRE-family like proteins CQ11_RS04310 SM00382 ATPases associated with a variety of cellular activities CQ11_RS04325 SM01240 CQ11_RS04325 CQ11_RS04330 SM00479 CQ11_RS04330 CQ11_RS04335 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_RS04335 SM01240 CQ11_RS04335 CQ11_RS04350 SM01211 CQ11_RS04350 CQ11_RS04355 SM01209 CQ11_RS04355 CQ11_RS04355 SM01210 CQ11_RS04355 CQ11_RS04380 SM01001 AIR carboxylase CQ11_RS04390 SM00883 Chaperonin 10 Kd subunit CQ11_RS04450 SM01005 Alanine racemase, C-terminal domain CQ11_RS04495 SM00382 ATPases associated with a variety of cellular activities CQ11_RS04525 SM00062 Bacterial periplasmic substrate-binding proteins CQ11_RS04535 SM00382 ATPases associated with a variety of cellular activities CQ11_RS04540 SM00422 helix_turn_helix, mercury resistance CQ11_RS04555 SM00662 RNA polymerases D CQ11_RS04575 SM00316 Ribosomal protein S1-like RNA-binding domain CQ11_RS04635 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CQ11_RS04640 SM01374 CQ11_RS04640 CQ11_RS04660 SM00322 K homology RNA-binding domain CQ11_RS04675 SM01382 CQ11_RS04675 CQ11_RS04675 SM01383 CQ11_RS04675 CQ11_RS04695 SM01403 CQ11_RS04695 CQ11_RS04715 SM00838 Elongation factor G C-terminus CQ11_RS04715 SM00889 Elongation factor G, domain IV CQ11_RS04735 SM00663 RNA polymerase I subunit A N-terminus CQ11_RS04765 SM00649 Ribosomal protein L11/L12 CQ11_RS04770 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CQ11_RS04860 SM00909 Sporulation and spore germination CQ11_RS04865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQ11_RS04865 SM00387 Histidine kinase-like ATPases CQ11_RS04865 SM00388 His Kinase A (phosphoacceptor) domain CQ11_RS04870 SM00448 cheY-homologous receiver domain CQ11_RS04870 SM00862 Transcriptional regulatory protein, C terminal CQ11_RS04985 SM00382 ATPases associated with a variety of cellular activities CQ11_RS04995 SM00984 UDP binding domain CQ11_RS05100 SM00387 Histidine kinase-like ATPases CQ11_RS05100 SM00388 His Kinase A (phosphoacceptor) domain CQ11_RS05105 SM00448 cheY-homologous receiver domain CQ11_RS05105 SM00862 Transcriptional regulatory protein, C terminal CQ11_RS05125 SM00710 Parallel beta-helix repeats CQ11_RS05155 SM00838 Elongation factor G C-terminus CQ11_RS05165 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05180 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05200 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_RS05240 SM00642 Alpha-amylase domain CQ11_RS05295 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05325 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05330 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05385 SM00954 Region found in RelA / SpoT proteins CQ11_RS05445 SM00354 helix_turn _helix lactose operon repressor CQ11_RS05450 SM00642 Alpha-amylase domain CQ11_RS05470 SM00642 Alpha-amylase domain CQ11_RS05505 SM00530 Helix-turn-helix XRE-family like proteins CQ11_RS05510 SM00901 CQ11_RS05510 CQ11_RS05610 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05615 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS05625 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05665 SM01192 CQ11_RS05665 CQ11_RS05665 SM01193 CQ11_RS05665 CQ11_RS05675 SM00487 DEAD-like helicases superfamily CQ11_RS05675 SM00490 helicase superfamily c-terminal domain CQ11_RS05675 SM00982 CQ11_RS05675 CQ11_RS05675 SM01058 CarD-like/TRCF domain CQ11_RS05690 SM01400 CQ11_RS05690 CQ11_RS05720 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05730 SM00347 helix_turn_helix multiple antibiotic resistance protein CQ11_RS05735 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05745 SM00650 Ribosomal RNA adenine dimethylases CQ11_RS05750 SM01208 CQ11_RS05750 CQ11_RS05790 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05845 SM00382 ATPases associated with a variety of cellular activities CQ11_RS05940 SM01061 CAT RNA binding domain CQ11_RS05975 SM01061 CAT RNA binding domain CQ11_RS06045 SM00833 Cobalamin synthesis protein cobW C-terminal domain CQ11_RS06065 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS06065 SM00866 CQ11_RS06065 CQ11_RS06070 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06140 SM00852 Probable molybdopterin binding domain CQ11_RS06150 SM00858 CQ11_RS06150 CQ11_RS06185 SM00529 Helix-turn-helix diphteria tox regulatory element CQ11_RS06185 SM00899 CQ11_RS06185 CQ11_RS06210 SM00357 Cold shock protein domain CQ11_RS06230 SM00448 cheY-homologous receiver domain CQ11_RS06230 SM00862 Transcriptional regulatory protein, C terminal CQ11_RS06235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQ11_RS06235 SM00387 Histidine kinase-like ATPases CQ11_RS06235 SM00388 His Kinase A (phosphoacceptor) domain CQ11_RS06240 SM00563 Phosphate acyltransferases CQ11_RS06270 SM00986 Uracil DNA glycosylase superfamily CQ11_RS06270 SM00987 UreE urease accessory protein, C-terminal domain CQ11_RS06305 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06350 SM00859 Semialdehyde dehydrogenase, NAD binding domain CQ11_RS06360 SM00493 CQ11_RS06360 CQ11_RS06400 SM01022 CQ11_RS06400 CQ11_RS06410 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQ11_RS06415 SM00840 CQ11_RS06415 CQ11_RS06435 SM01120 CQ11_RS06435 CQ11_RS06445 SM00855 Phosphoglycerate mutase family CQ11_RS06450 SM01007 Class II Aldolase and Adducin N-terminal domain CQ11_RS06495 SM01058 CarD-like/TRCF domain CQ11_RS06500 SM00448 cheY-homologous receiver domain CQ11_RS06500 SM00862 Transcriptional regulatory protein, C terminal CQ11_RS06505 SM00387 Histidine kinase-like ATPases CQ11_RS06505 SM00388 His Kinase A (phosphoacceptor) domain CQ11_RS06515 SM00855 Phosphoglycerate mutase family CQ11_RS06560 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06620 SM00327 von Willebrand factor (vWF) type A domain CQ11_RS06625 SM00327 von Willebrand factor (vWF) type A domain CQ11_RS06705 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06710 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06715 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06730 SM00829 Enoylreductase CQ11_RS06760 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06785 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS06785 SM00866 CQ11_RS06785 CQ11_RS06815 SM00382 ATPases associated with a variety of cellular activities CQ11_RS06835 SM01350 CQ11_RS06835 CQ11_RS06910 SM00812 Alpha-L-fucosidase CQ11_RS06935 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07035 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07040 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07045 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07095 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07130 SM01133 CQ11_RS07130 CQ11_RS07150 SM00506 Appr-1"-p processing enzyme CQ11_RS07185 SM00487 DEAD-like helicases superfamily CQ11_RS07185 SM00490 helicase superfamily c-terminal domain CQ11_RS07185 SM00847 Helicase associated domain (HA2) Add an annotation CQ11_RS07240 SM00448 cheY-homologous receiver domain CQ11_RS07240 SM00862 Transcriptional regulatory protein, C terminal CQ11_RS07285 SM00563 Phosphate acyltransferases CQ11_RS07305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_RS07325 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQ11_RS07415 SM00470 ParB-like nuclease domain CQ11_RS07430 SM00393 Putative single-stranded nucleic acids-binding domain CQ11_RS07440 SM01234 CQ11_RS07440 CQ11_RS07455 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07455 SM00760 Bacterial dnaA protein helix-turn-helix domain CQ11_RS07460 SM00480 DNA polymerase III beta subunit CQ11_RS07475 SM00387 Histidine kinase-like ATPases CQ11_RS07475 SM00433 TopoisomeraseII CQ11_RS07480 SM00434 DNA Topoisomerase IV CQ11_RS07540 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_RS07540 SM00740 CQ11_RS07540 CQ11_RS07555 SM00331 Sigma factor PP2C-like phosphatases CQ11_RS07555 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQ11_RS07560 SM00240 Forkhead associated domain CQ11_RS07565 SM00240 Forkhead associated domain CQ11_RS07590 SM00506 Appr-1"-p processing enzyme CQ11_RS07640 SM00226 Low molecular weight phosphatase family CQ11_RS07675 SM00731 SprT homologues. CQ11_RS07695 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07695 SM00487 DEAD-like helicases superfamily CQ11_RS07695 SM00490 helicase superfamily c-terminal domain CQ11_RS07695 SM00847 Helicase associated domain (HA2) Add an annotation CQ11_RS07700 SM00421 helix_turn_helix, Lux Regulon CQ11_RS07700 SM00448 cheY-homologous receiver domain CQ11_RS07715 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07725 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07735 SM00421 helix_turn_helix, Lux Regulon CQ11_RS07735 SM00448 cheY-homologous receiver domain CQ11_RS07765 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07770 SM00346 helix_turn_helix isocitrate lyase regulation CQ11_RS07795 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07810 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07815 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07820 SM00354 helix_turn _helix lactose operon repressor CQ11_RS07920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS07920 SM00866 CQ11_RS07920 CQ11_RS07925 SM00382 ATPases associated with a variety of cellular activities CQ11_RS07995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQ11_RS08120 SM00382 ATPases associated with a variety of cellular activities CQ11_RS08130 SM00852 Probable molybdopterin binding domain CQ11_RS08135 SM00852 Probable molybdopterin binding domain CQ11_RS08150 SM00729 Elongator protein 3, MiaB family, Radical SAM CQ11_RS08160 SM00642 Alpha-amylase domain CQ11_RS08175 SM00740 CQ11_RS08175 CQ11_RS08195 SM00100 Cyclic nucleotide-monophosphate binding domain CQ11_RS08195 SM00419 helix_turn_helix, cAMP Regulatory protein CQ11_RS08200 SM00478 endonuclease III CQ11_RS08200 SM00525 CQ11_RS08200 CQ11_RS08245 SM00487 DEAD-like helicases superfamily CQ11_RS08245 SM00490 helicase superfamily c-terminal domain CQ11_RS08265 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQ11_RS08265 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQ11_RS08265 SM00493 CQ11_RS08265 CQ11_RS08390 SM00382 ATPases associated with a variety of cellular activities CQ11_RS08415 SM00966 SpoVT / AbrB like domain CQ11_RS08430 SM00478 endonuclease III CQ11_RS08475 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQ11_RS08485 SM00450 Rhodanese Homology Domain CQ11_RS08510 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CQ11_RS08535 SM00271 DnaJ molecular chaperone homology domain CQ11_RS08540 SM00422 helix_turn_helix, mercury resistance CQ11_RS08585 SM00382 ATPases associated with a variety of cellular activities CQ11_RS08585 SM01086 C-terminal, D2-small domain, of ClpB protein CQ11_RS08640 SM00788 Adenylosuccinate synthetase CQ11_RS08655 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQ11_RS08690 SM00421 helix_turn_helix, Lux Regulon CQ11_RS08700 SM00327 von Willebrand factor (vWF) type A domain CQ11_RS08780 SM00855 Phosphoglycerate mutase family CQ11_RS08800 SM00382 ATPases associated with a variety of cellular activities CQ11_RS08855 SM00382 ATPases associated with a variety of cellular activities CQ11_RS08855 SM01086 C-terminal, D2-small domain, of ClpB protein CQ11_RS08910 SM01007 Class II Aldolase and Adducin N-terminal domain CQ11_RS08920 SM01120 CQ11_RS08920 CQ11_RS08925 SM00829 Enoylreductase CQ11_RS08990 SM00420 helix_turn_helix, Deoxyribose operon repressor CQ11_RS08990 SM01134 CQ11_RS08990 CQ11_RS09045 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09090 SM00354 helix_turn _helix lactose operon repressor CQ11_RS09125 SM01038 Beta galactosidase small chain CQ11_RS09135 SM00354 helix_turn _helix lactose operon repressor CQ11_RS09145 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS09145 SM00895 CQ11_RS09145 CQ11_RS09150 SM01350 CQ11_RS09150 CQ11_RS09165 SM00634 Bacterial Ig-like domain (group 1) CQ11_RS09190 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09195 SM00354 helix_turn _helix lactose operon repressor CQ11_RS09205 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09230 SM00354 helix_turn _helix lactose operon repressor CQ11_RS09280 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09305 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09360 SM00487 DEAD-like helicases superfamily CQ11_RS09360 SM00490 helicase superfamily c-terminal domain CQ11_RS09385 SM01101 CQ11_RS09385 CQ11_RS09400 SM00530 Helix-turn-helix XRE-family like proteins CQ11_RS09405 SM00642 Alpha-amylase domain CQ11_RS09485 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09500 SM00905 Dihydroneopterin aldolase CQ11_RS09520 SM00354 helix_turn _helix lactose operon repressor CQ11_RS09540 SM01038 Beta galactosidase small chain CQ11_RS09555 SM01120 CQ11_RS09555 CQ11_RS09640 SM00478 endonuclease III CQ11_RS09640 SM00525 CQ11_RS09640 CQ11_RS09650 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09670 SM00347 helix_turn_helix multiple antibiotic resistance protein CQ11_RS09675 SM00855 Phosphoglycerate mutase family CQ11_RS09720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQ11_RS09730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQ11_RS09775 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CQ11_RS09780 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CQ11_RS09825 SM00957 SecA DEAD-like domain CQ11_RS09825 SM00958 SecA preprotein cross-linking domain CQ11_RS09910 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS09910 SM00895 CQ11_RS09910 CQ11_RS09925 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09930 SM00382 ATPases associated with a variety of cellular activities CQ11_RS09935 SM01130 CQ11_RS09935 CQ11_RS10000 SM00861 Transketolase, pyrimidine binding domain CQ11_RS10005 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_RS10005 SM01091 Transporter associated domain CQ11_RS10010 SM00116 Domain in cystathionine beta-synthase and other proteins. CQ11_RS10035 SM00382 ATPases associated with a variety of cellular activities CQ11_RS10060 SM00836 DALR anticodon binding domain CQ11_RS10060 SM01016 Arginyl tRNA synthetase N terminal dom CQ11_RS10085 SM00382 ATPases associated with a variety of cellular activities CQ11_RS10095 SM00937 CQ11_RS10095 CQ11_RS10145 SM00382 ATPases associated with a variety of cellular activities CQ11_RS10200 SM00642 Alpha-amylase domain CQ11_RS10205 SM00354 helix_turn _helix lactose operon repressor CQ11_RS10230 SM00642 Alpha-amylase domain CQ11_RS10240 SM00642 Alpha-amylase domain CQ11_RS10245 SM00642 Alpha-amylase domain CQ11_RS10255 SM00382 ATPases associated with a variety of cellular activities CQ11_RS10285 SM00642 Alpha-amylase domain CQ11_RS10295 SM00341 Helicase and RNase D C-terminal CQ11_RS10345 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS10350 SM00382 ATPases associated with a variety of cellular activities CQ11_RS10405 SM00387 Histidine kinase-like ATPases CQ11_RS10425 SM00421 helix_turn_helix, Lux Regulon CQ11_RS10425 SM00448 cheY-homologous receiver domain CQ11_RS10430 SM00387 Histidine kinase-like ATPases CQ11_RS10440 SM00292 breast cancer carboxy-terminal domain CQ11_RS10440 SM00532 Ligase N family CQ11_RS10445 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS10445 SM00866 CQ11_RS10445 CQ11_RS10475 SM00155 Phospholipase D. Active site motifs. CQ11_RS10490 SM00845 GatB domain CQ11_RS10495 SM00919 Malic enzyme, NAD binding domain CQ11_RS10495 SM01274 CQ11_RS10495 CQ11_RS10545 SM01323 CQ11_RS10545 CQ11_RS10555 SM00644 CQ11_RS10555 CQ11_RS10555 SM01095 Cpl-7 lysozyme C-terminal domain CQ11_RS10585 SM00487 DEAD-like helicases superfamily CQ11_RS10585 SM00490 helicase superfamily c-terminal domain CQ11_RS10595 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_RS10600 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQ11_RS10615 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQ11_RS10625 SM00421 helix_turn_helix, Lux Regulon CQ11_RS10635 SM00641 Glycosyl hydrolases family 25 CQ11_RS10710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQ11_RS10710 SM00421 helix_turn_helix, Lux Regulon CQ11_RS10750 SM00220 Serine/Threonine protein kinases, catalytic domain CQ11_RS10830 SM00191 Integrin alpha (beta-propellor repeats). CQ11_RS10830 SM00364 Leucine-rich repeats, bacterial type CQ11_RS10830 SM00365 Leucine-rich repeat, SDS22-like subfamily CQ11_RS10850 SM00420 helix_turn_helix, Deoxyribose operon repressor CQ11_RS10850 SM01134 CQ11_RS10850 CQ11_RS10870 SM00954 Region found in RelA / SpoT proteins CQ11_RS10890 SM00858 CQ11_RS10890