locus-tag class description INS88_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix INS88_RS00005 PF00308 Bacterial dnaA protein INS88_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain INS88_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain INS88_RS00010 PF02767 DNA polymerase III beta subunit, central domain INS88_RS00015 PF02463 RecF/RecN/SMC N terminal domain INS88_RS00020 PF05258 Dna[CI] antecedent, DciA INS88_RS00025 PF00204 DNA gyrase B INS88_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus INS88_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS00025 PF01751 Toprim domain INS88_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller INS88_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A INS88_RS00035 PF12089 Transmembrane domain of unknown function (DUF3566) INS88_RS00070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD INS88_RS00080 PF06781 Cell division protein CrgA INS88_RS00085 PF04203 Sortase domain INS88_RS00095 PF03793 PASTA domain INS88_RS00095 PF00069 Protein kinase domain INS88_RS00100 PF00905 Penicillin binding protein transpeptidase domain INS88_RS00105 PF01098 Cell cycle protein INS88_RS00115 PF16697 Inner membrane component of T3SS, cytoplasmic domain INS88_RS00120 PF00498 FHA domain INS88_RS00120 PF01061 ABC-2 type transporter INS88_RS00120 PF00005 ABC transporter INS88_RS00135 PF01661 Macro domain INS88_RS00140 PF00075 RNase H INS88_RS00150 PF00326 Prolyl oligopeptidase family INS88_RS00150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain INS88_RS00155 PF01048 Phosphorylase superfamily INS88_RS00160 PF02664 S-Ribosylhomocysteinase (LuxS) INS88_RS00165 PF01475 Ferric uptake regulator family INS88_RS00175 PF07972 NrdI Flavodoxin like INS88_RS00180 PF00317 Ribonucleotide reductase, all-alpha domain INS88_RS00180 PF02867 Ribonucleotide reductase, barrel domain INS88_RS00180 PF08343 Ribonucleotide reductase N-terminal INS88_RS00190 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain INS88_RS00190 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain INS88_RS00200 PF00268 Ribonucleotide reductase, small chain INS88_RS00215 PF01850 PIN domain INS88_RS00220 PF01451 Low molecular weight phosphotyrosine protein phosphatase INS88_RS00230 PF13416 Bacterial extracellular solute-binding protein INS88_RS00235 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00240 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00260 PF00270 DEAD/DEAH box helicase INS88_RS00260 PF04408 Helicase associated domain (HA2) INS88_RS00260 PF11898 Domain of unknown function (DUF3418) INS88_RS00260 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold INS88_RS00260 PF00271 Helicase conserved C-terminal domain INS88_RS00265 PF00196 Bacterial regulatory proteins, luxR family INS88_RS00265 PF00072 Response regulator receiver domain INS88_RS00275 PF00005 ABC transporter INS88_RS00280 PF05231 MASE1 INS88_RS00280 PF07730 Histidine kinase INS88_RS00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS00285 PF00072 Response regulator receiver domain INS88_RS00285 PF00196 Bacterial regulatory proteins, luxR family INS88_RS00295 PF01263 Aldose 1-epimerase INS88_RS00300 PF03477 ATP cone domain INS88_RS00300 PF13597 Anaerobic ribonucleoside-triphosphate reductase INS88_RS00310 PF01757 Acyltransferase family INS88_RS00315 PF09339 IclR helix-turn-helix domain INS88_RS00315 PF01614 Bacterial transcriptional regulator INS88_RS00320 PF08125 Mannitol dehydrogenase C-terminal domain INS88_RS00320 PF01232 Mannitol dehydrogenase Rossmann domain INS88_RS00325 PF03786 D-mannonate dehydratase (UxuA) INS88_RS00330 PF01081 KDPG and KHG aldolase INS88_RS00335 PF00294 pfkB family carbohydrate kinase INS88_RS00340 PF00356 Bacterial regulatory proteins, lacI family INS88_RS00355 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00360 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00370 PF00288 GHMP kinases N terminal domain INS88_RS00370 PF08544 GHMP kinases C terminal INS88_RS00370 PF10509 Galactokinase galactose-binding signature INS88_RS00385 PF03747 ADP-ribosylglycohydrolase INS88_RS00395 PF00392 Bacterial regulatory proteins, gntR family INS88_RS00395 PF07702 UTRA domain INS88_RS00400 PF00005 ABC transporter INS88_RS00405 PF02653 Branched-chain amino acid transport system / permease component INS88_RS00410 PF13407 Periplasmic binding protein domain INS88_RS00415 PF01467 Cytidylyltransferase-like INS88_RS00415 PF00294 pfkB family carbohydrate kinase INS88_RS00420 PF11975 Family 4 glycosyl hydrolase C-terminal domain INS88_RS00420 PF02056 Family 4 glycosyl hydrolase INS88_RS00430 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain INS88_RS00430 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain INS88_RS00435 PF01636 Phosphotransferase enzyme family INS88_RS00440 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain INS88_RS00440 PF17386 Lacto-N-biose phosphorylase C-terminal domain INS88_RS00440 PF17385 Lacto-N-biose phosphorylase central domain INS88_RS00445 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00450 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00460 PF00480 ROK family INS88_RS00465 PF00480 ROK family INS88_RS00470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_RS00470 PF00005 ABC transporter INS88_RS00475 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00475 PF12911 N-terminal TM domain of oligopeptide transport permease C INS88_RS00480 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS00485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INS88_RS00490 PF00480 ROK family INS88_RS00505 PF03932 CutC family INS88_RS00520 PF00171 Aldehyde dehydrogenase family INS88_RS00525 PF01557 Fumarylacetoacetate (FAA) hydrolase family INS88_RS00530 PF00171 Aldehyde dehydrogenase family INS88_RS00535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily INS88_RS00540 PF07690 Major Facilitator Superfamily INS88_RS00540 PF00083 Sugar (and other) transporter INS88_RS00545 PF00392 Bacterial regulatory proteins, gntR family INS88_RS00545 PF07729 FCD domain INS88_RS00550 PF07976 Phenol hydroxylase, C-terminal dimerisation domain INS88_RS00550 PF01494 FAD binding domain INS88_RS00555 PF01557 Fumarylacetoacetate (FAA) hydrolase family INS88_RS00560 PF03328 HpcH/HpaI aldolase/citrate lyase family INS88_RS00570 PF02614 Glucuronate isomerase INS88_RS00575 PF03480 Bacterial extracellular solute-binding protein, family 7 INS88_RS00580 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component INS88_RS00580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INS88_RS00585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component INS88_RS00595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INS88_RS00595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INS88_RS00605 PF01032 FecCD transport family INS88_RS00610 PF01032 FecCD transport family INS88_RS00615 PF00005 ABC transporter INS88_RS00620 PF00171 Aldehyde dehydrogenase family INS88_RS00625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_RS00625 PF00205 Thiamine pyrophosphate enzyme, central domain INS88_RS00625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_RS00630 PF04962 KduI/IolB family INS88_RS00640 PF00294 pfkB family carbohydrate kinase INS88_RS00650 PF00923 Transaldolase/Fructose-6-phosphate aldolase INS88_RS00655 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INS88_RS00655 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INS88_RS00660 PF01261 Xylose isomerase-like TIM barrel INS88_RS00665 PF00083 Sugar (and other) transporter INS88_RS00670 PF00107 Zinc-binding dehydrogenase INS88_RS00670 PF08240 Alcohol dehydrogenase GroES-like domain INS88_RS00675 PF00005 ABC transporter INS88_RS00680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INS88_RS00680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INS88_RS00680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INS88_RS00680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INS88_RS00690 PF00403 Heavy-metal-associated domain INS88_RS00705 PF09335 SNARE associated Golgi protein INS88_RS00710 PF00206 Lyase INS88_RS00710 PF08328 Adenylosuccinate lyase C-terminal INS88_RS00715 PF03881 Fructosamine kinase INS88_RS00720 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV INS88_RS00725 PF00155 Aminotransferase class I and II INS88_RS00740 PF07726 ATPase family associated with various cellular activities (AAA) INS88_RS00740 PF17863 AAA lid domain INS88_RS00770 PF01487 Type I 3-dehydroquinase INS88_RS00780 PF00296 Luciferase-like monooxygenase INS88_RS00790 PF00248 Aldo/keto reductase family INS88_RS00795 PF00762 Ferrochelatase INS88_RS00800 PF01066 CDP-alcohol phosphatidyltransferase INS88_RS00810 PF00884 Sulfatase INS88_RS00815 PF00884 Sulfatase INS88_RS00820 PF00485 Phosphoribulokinase / Uridine kinase family INS88_RS00820 PF16875 Glycosyl hydrolase family 36 N-terminal domain INS88_RS00820 PF16874 Glycosyl hydrolase family 36 C-terminal domain INS88_RS00835 PF01661 Macro domain INS88_RS00865 PF03354 Phage Terminase INS88_RS00890 PF00145 C-5 cytosine-specific DNA methylase INS88_RS00900 PF01555 DNA methylase INS88_RS00910 PF02661 Fic/DOC family INS88_RS00910 PF13784 Fic/DOC family N-terminal INS88_RS00930 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) INS88_RS00935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus INS88_RS00935 PF13244 Domain of unknown function (DUF4040) INS88_RS00935 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter INS88_RS00935 PF00361 Proton-conducting membrane transporter INS88_RS00940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L INS88_RS00945 PF00361 Proton-conducting membrane transporter INS88_RS00955 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) INS88_RS00980 PF00005 ABC transporter INS88_RS00980 PF08402 TOBE domain INS88_RS00985 PF00665 Integrase core domain INS88_RS00985 PF13276 HTH-like domain INS88_RS01000 PF07690 Major Facilitator Superfamily INS88_RS01005 PF07883 Cupin domain INS88_RS01015 PF00480 ROK family INS88_RS01020 PF03649 Uncharacterised protein family (UPF0014) INS88_RS01030 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain INS88_RS01030 PF00326 Prolyl oligopeptidase family INS88_RS01040 PF12800 4Fe-4S binding domain INS88_RS01040 PF13247 4Fe-4S dicluster domain INS88_RS01045 PF01568 Molydopterin dinucleotide binding domain INS88_RS01045 PF00384 Molybdopterin oxidoreductase INS88_RS01045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain INS88_RS01050 PF02583 Metal-sensitive transcriptional repressor INS88_RS01055 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS01055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_RS01070 PF00156 Phosphoribosyl transferase domain INS88_RS01075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INS88_RS01075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INS88_RS01080 PF01979 Amidohydrolase family INS88_RS01085 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family INS88_RS01090 PF00156 Phosphoribosyl transferase domain INS88_RS01095 PF13749 Putative ATP-dependent DNA helicase recG C-terminal INS88_RS01095 PF00270 DEAD/DEAH box helicase INS88_RS01095 PF17191 RecG wedge domain INS88_RS01105 PF01180 Dihydroorotate dehydrogenase INS88_RS01110 PF00012 Hsp70 protein INS88_RS01115 PF01025 GrpE INS88_RS01120 PF00226 DnaJ domain INS88_RS01120 PF00684 DnaJ central domain INS88_RS01120 PF01556 DnaJ C terminal domain INS88_RS01125 PF13411 MerR HTH family regulatory protein INS88_RS01130 PF00293 NUDIX domain INS88_RS01135 PF03009 Glycerophosphoryl diester phosphodiesterase family INS88_RS01140 PF00326 Prolyl oligopeptidase family INS88_RS01140 PF07676 WD40-like Beta Propeller Repeat INS88_RS01140 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region INS88_RS01155 PF00749 tRNA synthetases class I (E and Q), catalytic domain INS88_RS01170 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain INS88_RS01170 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain INS88_RS01170 PF06827 Zinc finger found in FPG and IleRS INS88_RS01175 PF10431 C-terminal, D2-small domain, of ClpB protein INS88_RS01175 PF02861 Clp amino terminal domain, pathogenicity island component INS88_RS01175 PF17871 AAA lid domain INS88_RS01175 PF07724 AAA domain (Cdc48 subfamily) INS88_RS01175 PF00004 ATPase family associated with various cellular activities (AAA) INS88_RS01180 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS01180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_RS01195 PF03372 Endonuclease/Exonuclease/phosphatase family INS88_RS01215 PF00293 NUDIX domain INS88_RS01225 PF01384 Phosphate transporter family INS88_RS01230 PF02146 Sir2 family INS88_RS01235 PF01116 Fructose-bisphosphate aldolase class-II INS88_RS01240 PF13936 Helix-turn-helix domain INS88_RS01240 PF00665 Integrase core domain INS88_RS01250 PF00709 Adenylosuccinate synthetase INS88_RS01255 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain INS88_RS01255 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain INS88_RS01260 PF01259 SAICAR synthetase INS88_RS01265 PF00440 Bacterial regulatory proteins, tetR family INS88_RS01275 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain INS88_RS01275 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase INS88_RS01285 PF00575 S1 RNA binding domain INS88_RS01285 PF00773 RNB domain INS88_RS01285 PF17876 Cold shock domain INS88_RS01310 PF02028 BCCT, betaine/carnitine/choline family transporter INS88_RS01320 PF05737 Collagen binding domain INS88_RS01320 PF17802 Prealbumin-like fold domain INS88_RS01320 PF05738 Cna protein B-type domain INS88_RS01340 PF07690 Major Facilitator Superfamily INS88_RS01350 PF00056 lactate/malate dehydrogenase, NAD binding domain INS88_RS01350 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain INS88_RS01360 PF02388 FemAB family INS88_RS01365 PF02388 FemAB family INS88_RS01370 PF02388 FemAB family INS88_RS01400 PF01641 SelR domain INS88_RS01425 PF13090 Polyphosphate kinase C-terminal domain 2 INS88_RS01425 PF02503 Polyphosphate kinase middle domain INS88_RS01425 PF17941 Polyphosphate kinase C-terminal domain 1 INS88_RS01425 PF13089 Polyphosphate kinase N-terminal domain INS88_RS01430 PF00293 NUDIX domain INS88_RS01430 PF00300 Histidine phosphatase superfamily (branch 1) INS88_RS01435 PF12849 PBP superfamily domain INS88_RS01440 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01445 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01450 PF00005 ABC transporter INS88_RS01455 PF01384 Phosphate transporter family INS88_RS01465 PF01235 Sodium:alanine symporter family INS88_RS01475 PF08768 Domain of unknown function (DUF1794) INS88_RS01495 PF02580 D-Tyr-tRNA(Tyr) deacylase INS88_RS01500 PF00004 ATPase family associated with various cellular activities (AAA) INS88_RS01500 PF07724 AAA domain (Cdc48 subfamily) INS88_RS01500 PF17871 AAA lid domain INS88_RS01500 PF02861 Clp amino terminal domain, pathogenicity island component INS88_RS01500 PF10431 C-terminal, D2-small domain, of ClpB protein INS88_RS01505 PF08240 Alcohol dehydrogenase GroES-like domain INS88_RS01505 PF00107 Zinc-binding dehydrogenase INS88_RS01510 PF02447 GntP family permease INS88_RS01515 PF08125 Mannitol dehydrogenase C-terminal domain INS88_RS01515 PF01232 Mannitol dehydrogenase Rossmann domain INS88_RS01525 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain INS88_RS01525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase INS88_RS01530 PF00294 pfkB family carbohydrate kinase INS88_RS01540 PF07690 Major Facilitator Superfamily INS88_RS01545 PF04198 Putative sugar-binding domain INS88_RS01560 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INS88_RS01560 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INS88_RS01575 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INS88_RS01575 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INS88_RS01580 PF00596 Class II Aldolase and Adducin N-terminal domain INS88_RS01585 PF02734 DAK2 domain INS88_RS01585 PF02733 Dak1 domain INS88_RS01590 PF00107 Zinc-binding dehydrogenase INS88_RS01590 PF08240 Alcohol dehydrogenase GroES-like domain INS88_RS01595 PF02502 Ribose/Galactose Isomerase INS88_RS01620 PF02371 Transposase IS116/IS110/IS902 family INS88_RS01620 PF01548 Transposase INS88_RS01625 PF16355 Domain of unknown function (DUF4982) INS88_RS01625 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_RS01625 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_RS01625 PF00703 Glycosyl hydrolases family 2 INS88_RS01625 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 INS88_RS01635 PF13649 Methyltransferase domain INS88_RS01640 PF00005 ABC transporter INS88_RS01655 PF01925 Sulfite exporter TauE/SafE INS88_RS01660 PF04055 Radical SAM superfamily INS88_RS01660 PF13186 Iron-sulfur cluster-binding domain INS88_RS01665 PF00083 Sugar (and other) transporter INS88_RS01670 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family INS88_RS01670 PF00356 Bacterial regulatory proteins, lacI family INS88_RS01675 PF00884 Sulfatase INS88_RS01680 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS01690 PF00356 Bacterial regulatory proteins, lacI family INS88_RS01700 PF00703 Glycosyl hydrolases family 2 INS88_RS01700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_RS01700 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_RS01700 PF16353 Domain of unknown function(DUF4981) INS88_RS01700 PF02929 Beta galactosidase small chain INS88_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01720 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01730 PF04471 Restriction endonuclease INS88_RS01730 PF14338 Mrr N-terminal domain INS88_RS01750 PF01527 Transposase INS88_RS01755 PF04851 Type III restriction enzyme, res subunit INS88_RS01760 PF01555 DNA methylase INS88_RS01810 PF01381 Helix-turn-helix INS88_RS01820 PF13091 PLD-like domain INS88_RS01825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain INS88_RS01825 PF02896 PEP-utilising enzyme, TIM barrel domain INS88_RS01825 PF00391 PEP-utilising enzyme, mobile domain INS88_RS01840 PF00128 Alpha amylase, catalytic domain INS88_RS01845 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01850 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01870 PF07670 Nucleoside recognition INS88_RS01870 PF07664 Ferrous iron transport protein B C terminus INS88_RS01870 PF02421 Ferrous iron transport protein B INS88_RS01870 PF17910 FeoB cytosolic helical domain INS88_RS01880 PF01565 FAD binding domain INS88_RS01880 PF02913 FAD linked oxidases, C-terminal domain INS88_RS01880 PF13183 4Fe-4S dicluster domain INS88_RS01890 PF12146 Serine aminopeptidase, S33 INS88_RS01895 PF00561 alpha/beta hydrolase fold INS88_RS01900 PF00877 NlpC/P60 family INS88_RS01905 PF00719 Inorganic pyrophosphatase INS88_RS01910 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family INS88_RS01920 PF09179 TilS substrate binding domain INS88_RS01920 PF01171 PP-loop family INS88_RS01925 PF00156 Phosphoribosyl transferase domain INS88_RS01930 PF17862 AAA+ lid domain INS88_RS01930 PF01434 Peptidase family M41 INS88_RS01930 PF00004 ATPase family associated with various cellular activities (AAA) INS88_RS01935 PF01227 GTP cyclohydrolase I INS88_RS01940 PF00809 Pterin binding enzyme INS88_RS01945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) INS88_RS01965 PF00356 Bacterial regulatory proteins, lacI family INS88_RS01970 PF13416 Bacterial extracellular solute-binding protein INS88_RS01975 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01980 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS01985 PF16353 Domain of unknown function(DUF4981) INS88_RS01985 PF00703 Glycosyl hydrolases family 2 INS88_RS01985 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_RS01985 PF02929 Beta galactosidase small chain INS88_RS01985 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_RS01990 PF05524 PEP-utilising enzyme, N-terminal INS88_RS01990 PF00391 PEP-utilising enzyme, mobile domain INS88_RS01990 PF02896 PEP-utilising enzyme, TIM barrel domain INS88_RS01990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 INS88_RS01990 PF00381 PTS HPr component phosphorylation site INS88_RS01995 PF02734 DAK2 domain INS88_RS02000 PF02733 Dak1 domain INS88_RS02010 PF02569 Pantoate-beta-alanine ligase INS88_RS02015 PF02261 Aspartate decarboxylase INS88_RS02025 PF01336 OB-fold nucleic acid binding domain INS88_RS02025 PF00152 tRNA synthetases class II (D, K and N) INS88_RS02030 PF03176 MMPL family INS88_RS02035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain INS88_RS02035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain INS88_RS02040 PF00230 Major intrinsic protein INS88_RS02055 PF00005 ABC transporter INS88_RS02070 PF02754 Cysteine-rich domain INS88_RS02070 PF13183 4Fe-4S dicluster domain INS88_RS02075 PF00890 FAD binding domain INS88_RS02080 PF01266 FAD dependent oxidoreductase INS88_RS02080 PF04324 BFD-like [2Fe-2S] binding domain INS88_RS02085 PF04198 Putative sugar-binding domain INS88_RS02090 PF00583 Acetyltransferase (GNAT) family INS88_RS02100 PF10576 Iron-sulfur binding domain of endonuclease III INS88_RS02100 PF00633 Helix-hairpin-helix motif INS88_RS02100 PF00730 HhH-GPD superfamily base excision DNA repair protein INS88_RS02110 PF18073 Rubredoxin metal binding domain INS88_RS02110 PF06745 KaiC INS88_RS02115 PF02080 TrkA-C domain INS88_RS02115 PF02254 TrkA-N domain INS88_RS02120 PF02386 Cation transport protein INS88_RS02125 PF12728 Helix-turn-helix domain INS88_RS02140 PF00300 Histidine phosphatase superfamily (branch 1) INS88_RS02150 PF01040 UbiA prenyltransferase family INS88_RS02155 PF00501 AMP-binding enzyme INS88_RS02155 PF13193 AMP-binding enzyme C-terminal domain INS88_RS02165 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS02170 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS02175 PF01547 Bacterial extracellular solute-binding protein INS88_RS02180 PF00378 Enoyl-CoA hydratase/isomerase INS88_RS02185 PF18374 Enolase N-terminal domain-like INS88_RS02185 PF13378 Enolase C-terminal domain-like INS88_RS02190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_RS02190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_RS02195 PF13180 PDZ domain INS88_RS02200 PF00425 chorismate binding enzyme INS88_RS02205 PF01209 ubiE/COQ5 methyltransferase family INS88_RS02210 PF01494 FAD binding domain INS88_RS02215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 INS88_RS02220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit INS88_RS02225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit INS88_RS02230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit INS88_RS02240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit INS88_RS02240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region INS88_RS02240 PF10531 SLBB domain INS88_RS02245 PF00384 Molybdopterin oxidoreductase INS88_RS02245 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region INS88_RS02245 PF01568 Molydopterin dinucleotide binding domain INS88_RS02250 PF00146 NADH dehydrogenase INS88_RS02255 PF12838 4Fe-4S dicluster domain INS88_RS02260 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 INS88_RS02265 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L INS88_RS02270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus INS88_RS02270 PF00361 Proton-conducting membrane transporter INS88_RS02275 PF00361 Proton-conducting membrane transporter INS88_RS02280 PF00361 Proton-conducting membrane transporter INS88_RS02285 PF00348 Polyprenyl synthetase INS88_RS02290 PF01043 SecA preprotein cross-linking domain INS88_RS02290 PF07517 SecA DEAD-like domain INS88_RS02290 PF07516 SecA Wing and Scaffold domain INS88_RS02330 PF13476 AAA domain INS88_RS02335 PF00149 Calcineurin-like phosphoesterase INS88_RS02335 PF12320 Type 5 capsule protein repressor C-terminal domain INS88_RS02340 PF00459 Inositol monophosphatase family INS88_RS02345 PF03193 RsgA GTPase INS88_RS02350 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INS88_RS02360 PF13088 BNR repeat-like domain INS88_RS02360 PF02973 Sialidase, N-terminal domain INS88_RS02360 PF04650 YSIRK type signal peptide INS88_RS02365 PF07859 alpha/beta hydrolase fold INS88_RS02375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INS88_RS02380 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS02385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_RS02385 PF00005 ABC transporter INS88_RS02390 PF00005 ABC transporter INS88_RS02390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_RS02395 PF00701 Dihydrodipicolinate synthetase family INS88_RS02400 PF00480 ROK family INS88_RS02405 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase INS88_RS02410 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase INS88_RS02415 PF01979 Amidohydrolase family INS88_RS02420 PF04542 Sigma-70 region 2 INS88_RS02420 PF08281 Sigma-70, region 4 INS88_RS02430 PF08239 Bacterial SH3 domain INS88_RS02430 PF00877 NlpC/P60 family INS88_RS02430 PF01476 LysM domain INS88_RS02440 PF00676 Dehydrogenase E1 component INS88_RS02440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) INS88_RS02440 PF16870 2-oxoglutarate dehydrogenase C-terminal INS88_RS02440 PF02779 Transketolase, pyrimidine binding domain INS88_RS02440 PF16078 2-oxoglutarate dehydrogenase N-terminus INS88_RS02445 PF01595 Cyclin M transmembrane N-terminal domain INS88_RS02445 PF03471 Transporter associated domain INS88_RS02445 PF00571 CBS domain INS88_RS02450 PF01595 Cyclin M transmembrane N-terminal domain INS88_RS02450 PF00571 CBS domain INS88_RS02455 PF01551 Peptidase family M23 INS88_RS02475 PF00005 ABC transporter INS88_RS02485 PF02371 Transposase IS116/IS110/IS902 family INS88_RS02485 PF01548 Transposase INS88_RS02490 PF00665 Integrase core domain INS88_RS02490 PF13936 Helix-turn-helix domain INS88_RS02495 PF01527 Transposase INS88_RS02500 PF13276 HTH-like domain INS88_RS02500 PF00665 Integrase core domain INS88_RS02510 PF13276 HTH-like domain INS88_RS02510 PF13683 Integrase core domain INS88_RS02535 PF03485 Arginyl tRNA synthetase N terminal domain INS88_RS02535 PF05746 DALR anticodon binding domain INS88_RS02535 PF00750 tRNA synthetases class I (R) INS88_RS02540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain INS88_RS02540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain INS88_RS02545 PF03447 Homoserine dehydrogenase, NAD binding domain INS88_RS02545 PF00742 Homoserine dehydrogenase INS88_RS02545 PF01842 ACT domain INS88_RS02550 PF00291 Pyridoxal-phosphate dependent enzyme INS88_RS02555 PF00288 GHMP kinases N terminal domain INS88_RS02560 PF07497 Rho termination factor, RNA-binding domain INS88_RS02560 PF07498 Rho termination factor, N-terminal domain INS88_RS02560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INS88_RS02565 PF01197 Ribosomal protein L31 INS88_RS02570 PF00472 RF-1 domain INS88_RS02570 PF03462 PCRF domain INS88_RS02575 PF13649 Methyltransferase domain INS88_RS02575 PF17827 PrmC N-terminal domain INS88_RS02580 PF01300 Telomere recombination INS88_RS02585 PF00953 Glycosyl transferase family 4 INS88_RS02595 PF00119 ATP synthase A chain INS88_RS02600 PF00137 ATP synthase subunit C INS88_RS02605 PF00430 ATP synthase B/B' CF(0) INS88_RS02610 PF00213 ATP synthase delta (OSCP) subunit INS88_RS02615 PF02874 ATP synthase alpha/beta family, beta-barrel domain INS88_RS02615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INS88_RS02615 PF00306 ATP synthase alpha/beta chain, C terminal domain INS88_RS02620 PF00231 ATP synthase INS88_RS02625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain INS88_RS02625 PF02874 ATP synthase alpha/beta family, beta-barrel domain INS88_RS02630 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain INS88_RS02630 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain INS88_RS02640 PF01939 Endonuclease NucS INS88_RS02675 PF00128 Alpha amylase, catalytic domain INS88_RS02680 PF00356 Bacterial regulatory proteins, lacI family INS88_RS02690 PF14785 Maltose transport system permease protein MalF P2 domain INS88_RS02690 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS02695 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS02710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_RS02710 PF02806 Alpha amylase, C-terminal all-beta domain INS88_RS02710 PF00128 Alpha amylase, catalytic domain INS88_RS02715 PF18085 Maltokinase N-terminal cap domain INS88_RS02720 PF00128 Alpha amylase, catalytic domain INS88_RS02720 PF16657 Maltogenic Amylase, C-terminal domain INS88_RS02725 PF11896 Domain of unknown function (DUF3416) INS88_RS02725 PF00128 Alpha amylase, catalytic domain INS88_RS02735 PF00343 Carbohydrate phosphorylase INS88_RS02740 PF00579 tRNA synthetases class I (W and Y) INS88_RS02745 PF00128 Alpha amylase, catalytic domain INS88_RS02745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_RS02750 PF00293 NUDIX domain INS88_RS02750 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain INS88_RS02750 PF09297 NADH pyrophosphatase zinc ribbon domain INS88_RS02755 PF00570 HRDC domain INS88_RS02755 PF13361 UvrD-like helicase C-terminal domain INS88_RS02755 PF00580 UvrD/REP helicase N-terminal domain INS88_RS02770 PF05362 Lon protease (S16) C-terminal proteolytic domain INS88_RS02770 PF13180 PDZ domain INS88_RS02780 PF03699 Uncharacterised protein family (UPF0182) INS88_RS02785 PF08305 NPCBM/NEW2 domain INS88_RS02785 PF12905 Endo-alpha-N-acetylgalactosaminidase INS88_RS02785 PF17974 Galactose-binding domain-like INS88_RS02785 PF17451 Glycosyl hydrolase 101 beta sandwich domain INS88_RS02785 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase INS88_RS02785 PF18080 Galactose mutarotase-like fold domain INS88_RS02810 PF02371 Transposase IS116/IS110/IS902 family INS88_RS02810 PF01548 Transposase INS88_RS02820 PF00392 Bacterial regulatory proteins, gntR family INS88_RS02825 PF00005 ABC transporter INS88_RS02835 PF01699 Sodium/calcium exchanger protein INS88_RS02845 PF00890 FAD binding domain INS88_RS02845 PF02910 Fumarate reductase flavoprotein C-term INS88_RS02850 PF13183 4Fe-4S dicluster domain INS88_RS02850 PF13085 2Fe-2S iron-sulfur cluster binding domain INS88_RS02865 PF00186 Dihydrofolate reductase INS88_RS02870 PF00303 Thymidylate synthase INS88_RS02880 PF07568 Histidine kinase INS88_RS02880 PF12282 Signal transduction histidine kinase INS88_RS02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS02885 PF00248 Aldo/keto reductase family INS88_RS02890 PF02467 Transcription factor WhiB INS88_RS02900 PF00005 ABC transporter INS88_RS02900 PF09383 NIL domain INS88_RS02905 PF00196 Bacterial regulatory proteins, luxR family INS88_RS02905 PF00072 Response regulator receiver domain INS88_RS02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS02910 PF07730 Histidine kinase INS88_RS02915 PF02586 SOS response associated peptidase (SRAP) INS88_RS02920 PF03120 NAD-dependent DNA ligase OB-fold domain INS88_RS02920 PF12826 Helix-hairpin-helix motif INS88_RS02920 PF00533 BRCA1 C Terminus (BRCT) domain INS88_RS02920 PF03119 NAD-dependent DNA ligase C4 zinc finger domain INS88_RS02920 PF01653 NAD-dependent DNA ligase adenylation domain INS88_RS02925 PF00082 Subtilase family INS88_RS02925 PF04151 Bacterial pre-peptidase C-terminal domain INS88_RS02935 PF13396 Phospholipase_D-nuclease N-terminal INS88_RS02935 PF13091 PLD-like domain INS88_RS02940 PF02686 Glu-tRNAGln amidotransferase C subunit INS88_RS02945 PF01425 Amidase INS88_RS02950 PF02637 GatB domain INS88_RS02950 PF02934 GatB/GatE catalytic domain INS88_RS02955 PF03949 Malic enzyme, NAD binding domain INS88_RS02955 PF00390 Malic enzyme, N-terminal domain INS88_RS03005 PF08241 Methyltransferase domain INS88_RS03010 PF00920 Dehydratase family INS88_RS03015 PF02080 TrkA-C domain INS88_RS03015 PF06826 Predicted Permease Membrane Region INS88_RS03020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_RS03020 PF00205 Thiamine pyrophosphate enzyme, central domain INS88_RS03020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_RS03025 PF10369 Small subunit of acetolactate synthase INS88_RS03030 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain INS88_RS03030 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain INS88_RS03035 PF00206 Lyase INS88_RS03035 PF10415 Fumarase C C-terminus INS88_RS03050 PF00180 Isocitrate/isopropylmalate dehydrogenase INS88_RS03055 PF01063 Amino-transferase class IV INS88_RS03060 PF01228 Glycine radical INS88_RS03060 PF02901 Pyruvate formate lyase-like INS88_RS03065 PF01228 Glycine radical INS88_RS03065 PF02901 Pyruvate formate lyase-like INS88_RS03070 PF04055 Radical SAM superfamily INS88_RS03075 PF01168 Alanine racemase, N-terminal domain INS88_RS03080 PF00271 Helicase conserved C-terminal domain INS88_RS03080 PF08148 DSHCT (NUC185) domain INS88_RS03080 PF00270 DEAD/DEAH box helicase INS88_RS03095 PF12804 MobA-like NTP transferase domain INS88_RS03100 PF04991 LicD family INS88_RS03105 PF01501 Glycosyl transferase family 8 INS88_RS03105 PF00535 Glycosyl transferase family 2 INS88_RS03120 PF00535 Glycosyl transferase family 2 INS88_RS03135 PF00535 Glycosyl transferase family 2 INS88_RS03160 PF00929 Exonuclease INS88_RS03170 PF03193 RsgA GTPase INS88_RS03185 PF00005 ABC transporter INS88_RS03185 PF12848 ABC transporter INS88_RS03195 PF02446 4-alpha-glucanotransferase INS88_RS03200 PF02378 Phosphotransferase system, EIIC INS88_RS03200 PF00367 phosphotransferase system, EIIB INS88_RS03200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 INS88_RS03205 PF03352 Methyladenine glycosylase INS88_RS03210 PF01433 Peptidase family M1 domain INS88_RS03210 PF11838 ERAP1-like C-terminal domain INS88_RS03220 PF05661 Protein of unknown function (DUF808) INS88_RS03225 PF01431 Peptidase family M13 INS88_RS03225 PF05649 Peptidase family M13 INS88_RS03230 PF02502 Ribose/Galactose Isomerase INS88_RS03235 PF00132 Bacterial transferase hexapeptide (six repeats) INS88_RS03240 PF00291 Pyridoxal-phosphate dependent enzyme INS88_RS03245 PF09186 Domain of unknown function (DUF1949) INS88_RS03245 PF01205 Uncharacterized protein family UPF0029 INS88_RS03250 PF01783 Ribosomal L32p protein family INS88_RS03275 PF01906 Putative heavy-metal-binding INS88_RS03300 PF00248 Aldo/keto reductase family INS88_RS03305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase INS88_RS03305 PF05698 Bacterial trigger factor protein (TF) C-terminus INS88_RS03305 PF05697 Bacterial trigger factor protein (TF) INS88_RS03310 PF00574 Clp protease INS88_RS03315 PF00574 Clp protease INS88_RS03325 PF06689 ClpX C4-type zinc finger INS88_RS03325 PF07724 AAA domain (Cdc48 subfamily) INS88_RS03325 PF10431 C-terminal, D2-small domain, of ClpB protein INS88_RS03330 PF02153 Prephenate dehydrogenase INS88_RS03330 PF01817 Chorismate mutase type II INS88_RS03335 PF00501 AMP-binding enzyme INS88_RS03340 PF00133 tRNA synthetases class I (I, L, M and V) INS88_RS03340 PF08264 Anticodon-binding domain of tRNA INS88_RS03350 PF14748 Pyrroline-5-carboxylate reductase dimerisation INS88_RS03350 PF03807 NADP oxidoreductase coenzyme F420-dependent INS88_RS03365 PF08264 Anticodon-binding domain of tRNA INS88_RS03365 PF00133 tRNA synthetases class I (I, L, M and V) INS88_RS03370 PF08245 Mur ligase middle domain INS88_RS03370 PF02875 Mur ligase family, glutamate ligase domain INS88_RS03380 PF00334 Nucleoside diphosphate kinase INS88_RS03385 PF02463 RecF/RecN/SMC N terminal domain INS88_RS03385 PF06470 SMC proteins Flexible Hinge Domain INS88_RS03395 PF03606 C4-dicarboxylate anaerobic carrier INS88_RS03400 PF07687 Peptidase dimerisation domain INS88_RS03400 PF01546 Peptidase family M20/M25/M40 INS88_RS03405 PF00448 SRP54-type protein, GTPase domain INS88_RS03405 PF02881 SRP54-type protein, helical bundle domain INS88_RS03410 PF00448 SRP54-type protein, GTPase domain INS88_RS03410 PF02881 SRP54-type protein, helical bundle domain INS88_RS03410 PF02978 Signal peptide binding domain INS88_RS03415 PF01979 Amidohydrolase family INS88_RS03420 PF01545 Cation efflux family INS88_RS03420 PF16916 Dimerisation domain of Zinc Transporter INS88_RS03425 PF00886 Ribosomal protein S16 INS88_RS03435 PF05239 PRC-barrel domain INS88_RS03435 PF01782 RimM N-terminal domain INS88_RS03440 PF01746 tRNA (Guanine-1)-methyltransferase INS88_RS03445 PF01245 Ribosomal protein L19 INS88_RS03450 PF10502 Signal peptidase, peptidase S26 INS88_RS03455 PF01351 Ribonuclease HII INS88_RS03460 PF10611 Protein of unknown function (DUF2469) INS88_RS03465 PF02021 Uncharacterised protein family UPF0102 INS88_RS03470 PF13335 Magnesium chelatase, subunit ChlI C-terminal INS88_RS03470 PF01078 Magnesium chelatase, subunit ChlI INS88_RS03475 PF02481 DNA recombination-mediator protein A INS88_RS03475 PF17782 DprA winged helix domain INS88_RS03480 PF02899 Phage integrase, N-terminal SAM-like domain INS88_RS03480 PF00589 Phage integrase family INS88_RS03490 PF03458 UPF0126 domain INS88_RS03495 PF00318 Ribosomal protein S2 INS88_RS03500 PF00889 Elongation factor TS INS88_RS03505 PF01012 Electron transfer flavoprotein domain INS88_RS03510 PF01012 Electron transfer flavoprotein domain INS88_RS03510 PF00766 Electron transfer flavoprotein FAD-binding domain INS88_RS03515 PF01494 FAD binding domain INS88_RS03525 PF07690 Major Facilitator Superfamily INS88_RS03535 PF00696 Amino acid kinase family INS88_RS03540 PF01765 Ribosome recycling factor INS88_RS03550 PF04055 Radical SAM superfamily INS88_RS03560 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase INS88_RS03560 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain INS88_RS03560 PF13288 DXP reductoisomerase C-terminal domain INS88_RS03565 PF17820 PDZ domain INS88_RS03565 PF02163 Peptidase family M50 INS88_RS03570 PF04551 GcpE protein INS88_RS03580 PF04073 Aminoacyl-tRNA editing domain INS88_RS03580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_RS03580 PF03129 Anticodon binding domain INS88_RS03590 PF02576 RimP N-terminal domain INS88_RS03590 PF17384 RimP C-terminal SH3 domain INS88_RS03595 PF13184 NusA-like KH domain INS88_RS03595 PF08529 NusA N-terminal domain INS88_RS03605 PF04760 Translation initiation factor IF-2, N-terminal region INS88_RS03605 PF00009 Elongation factor Tu GTP binding domain INS88_RS03605 PF11987 Translation-initiation factor 2 INS88_RS03610 PF02033 Ribosome-binding factor A INS88_RS03615 PF01509 TruB family pseudouridylate synthase (N terminal domain) INS88_RS03615 PF16198 tRNA pseudouridylate synthase B C-terminal domain INS88_RS03615 PF09142 tRNA Pseudouridine synthase II, C terminal INS88_RS03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS03620 PF00989 PAS fold INS88_RS03620 PF00672 HAMP domain INS88_RS03620 PF18698 Histidine kinase sensor domain INS88_RS03620 PF00512 His Kinase A (phospho-acceptor) domain INS88_RS03625 PF00486 Transcriptional regulatory protein, C terminal INS88_RS03625 PF00072 Response regulator receiver domain INS88_RS03630 PF07690 Major Facilitator Superfamily INS88_RS03640 PF08402 TOBE domain INS88_RS03640 PF00005 ABC transporter INS88_RS03660 PF01687 Riboflavin kinase INS88_RS03660 PF06574 FAD synthetase INS88_RS03670 PF00005 ABC transporter INS88_RS03705 PF01527 Transposase INS88_RS03705 PF13333 Integrase core domain INS88_RS03705 PF13276 HTH-like domain INS88_RS03705 PF00665 Integrase core domain INS88_RS03725 PF01527 Transposase INS88_RS03730 PF00312 Ribosomal protein S15 INS88_RS03735 PF00013 KH domain INS88_RS03735 PF01138 3' exoribonuclease family, domain 1 INS88_RS03735 PF00575 S1 RNA binding domain INS88_RS03735 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain INS88_RS03745 PF05193 Peptidase M16 inactive domain INS88_RS03745 PF00675 Insulinase (Peptidase family M16) INS88_RS03750 PF05173 Dihydrodipicolinate reductase, C-terminus INS88_RS03750 PF01113 Dihydrodipicolinate reductase, N-terminus INS88_RS03755 PF00176 SNF2 family N-terminal domain INS88_RS03755 PF00271 Helicase conserved C-terminal domain INS88_RS03755 PF12419 SNF2 Helicase protein INS88_RS03770 PF00701 Dihydrodipicolinate synthetase family INS88_RS03775 PF12706 Beta-lactamase superfamily domain INS88_RS03775 PF17770 Ribonuclease J C-terminal domain INS88_RS03775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain INS88_RS03780 PF01580 FtsK/SpoIIIE family INS88_RS03780 PF09397 Ftsk gamma domain INS88_RS03780 PF17854 FtsK alpha domain INS88_RS03790 PF01066 CDP-alcohol phosphatidyltransferase INS88_RS03795 PF00994 Probable molybdopterin binding domain INS88_RS03795 PF18146 Damage-inducible protein CinA KH domain INS88_RS03795 PF02464 Competence-damaged protein INS88_RS03810 PF00154 recA bacterial DNA recombination protein INS88_RS03815 PF02631 RecX family INS88_RS03820 PF04055 Radical SAM superfamily INS88_RS03820 PF00919 Uncharacterized protein family UPF0004 INS88_RS03830 PF05175 Methyltransferase small domain INS88_RS03835 PF16360 GTP-binding GTPase Middle Region INS88_RS03835 PF13167 GTP-binding GTPase N-terminal INS88_RS03835 PF01926 50S ribosome-binding GTPase INS88_RS03840 PF13307 Helicase C-terminal domain INS88_RS03845 PF01726 LexA DNA binding domain INS88_RS03845 PF00717 Peptidase S24-like INS88_RS03855 PF03477 ATP cone domain INS88_RS03860 PF13193 AMP-binding enzyme C-terminal domain INS88_RS03860 PF00501 AMP-binding enzyme INS88_RS03865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INS88_RS03865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INS88_RS03890 PF00817 impB/mucB/samB family INS88_RS03890 PF11799 impB/mucB/samB family C-terminal domain INS88_RS03900 PF02381 MraZ protein, putative antitoxin-like INS88_RS03905 PF01795 MraW methylase family INS88_RS03915 PF00905 Penicillin binding protein transpeptidase domain INS88_RS03915 PF03717 Penicillin-binding Protein dimerisation domain INS88_RS03920 PF02875 Mur ligase family, glutamate ligase domain INS88_RS03920 PF08245 Mur ligase middle domain INS88_RS03920 PF01225 Mur ligase family, catalytic domain INS88_RS03925 PF08245 Mur ligase middle domain INS88_RS03925 PF01225 Mur ligase family, catalytic domain INS88_RS03925 PF02875 Mur ligase family, glutamate ligase domain INS88_RS03930 PF00953 Glycosyl transferase family 4 INS88_RS03930 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 INS88_RS03935 PF02875 Mur ligase family, glutamate ligase domain INS88_RS03935 PF08245 Mur ligase middle domain INS88_RS03940 PF01098 Cell cycle protein INS88_RS03945 PF03033 Glycosyltransferase family 28 N-terminal domain INS88_RS03945 PF04101 Glycosyltransferase family 28 C-terminal domain INS88_RS03950 PF02875 Mur ligase family, glutamate ligase domain INS88_RS03950 PF08245 Mur ligase middle domain INS88_RS03950 PF01225 Mur ligase family, catalytic domain INS88_RS03960 PF12327 FtsZ family, C-terminal domain INS88_RS03960 PF00091 Tubulin/FtsZ family, GTPase domain INS88_RS03965 PF02578 Multi-copper polyphenol oxidoreductase laccase INS88_RS03970 PF04472 Cell division protein SepF INS88_RS03985 PF01252 Signal peptidase (SPase) II INS88_RS03990 PF00849 RNA pseudouridylate synthase INS88_RS03995 PF13673 Acetyltransferase (GNAT) domain INS88_RS04000 PF07733 Bacterial DNA polymerase III alpha NTPase domain INS88_RS04000 PF02811 PHP domain INS88_RS04000 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INS88_RS04000 PF14579 Helix-hairpin-helix motif INS88_RS04015 PF01475 Ferric uptake regulator family INS88_RS04020 PF00950 ABC 3 transport family INS88_RS04025 PF00005 ABC transporter INS88_RS04035 PF03129 Anticodon binding domain INS88_RS04035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_RS04045 PF01207 Dihydrouridine synthase (Dus) INS88_RS04055 PF01966 HD domain INS88_RS04055 PF13286 Phosphohydrolase-associated domain INS88_RS04060 PF13662 Toprim domain INS88_RS04060 PF01807 CHC2 zinc finger INS88_RS04060 PF08278 DNA primase DnaG DnaB-binding INS88_RS04060 PF08275 DNA primase catalytic core, N-terminal domain INS88_RS04060 PF10410 DnaB-helicase binding domain of primase INS88_RS04070 PF00902 Sec-independent protein translocase protein (TatC) INS88_RS04075 PF02416 mttA/Hcf106 family INS88_RS04080 PF02416 mttA/Hcf106 family INS88_RS04110 PF01032 FecCD transport family INS88_RS04115 PF00005 ABC transporter INS88_RS04155 PF01327 Polypeptide deformylase INS88_RS04160 PF08338 Domain of unknown function (DUF1731) INS88_RS04160 PF01370 NAD dependent epimerase/dehydratase family INS88_RS04180 PF01300 Telomere recombination INS88_RS04185 PF13419 Haloacid dehalogenase-like hydrolase INS88_RS04195 PF00664 ABC transporter transmembrane region INS88_RS04195 PF00005 ABC transporter INS88_RS04200 PF00005 ABC transporter INS88_RS04200 PF00664 ABC transporter transmembrane region INS88_RS04205 PF07690 Major Facilitator Superfamily INS88_RS04210 PF17831 Pyruvate dehydrogenase E1 component middle domain INS88_RS04210 PF00456 Transketolase, thiamine diphosphate binding domain INS88_RS04235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) INS88_RS04240 PF02537 CrcB-like protein, Camphor Resistance (CrcB) INS88_RS04245 PF01784 NIF3 (NGG1p interacting factor 3) INS88_RS04265 PF00480 ROK family INS88_RS04270 PF00557 Metallopeptidase family M24 INS88_RS04280 PF00120 Glutamine synthetase, catalytic domain INS88_RS04280 PF03951 Glutamine synthetase, beta-Grasp domain INS88_RS04285 PF08335 GlnD PII-uridylyltransferase INS88_RS04285 PF03710 Glutamate-ammonia ligase adenylyltransferase INS88_RS04315 PF00120 Glutamine synthetase, catalytic domain INS88_RS04315 PF03951 Glutamine synthetase, beta-Grasp domain INS88_RS04335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) INS88_RS04335 PF02817 e3 binding domain INS88_RS04335 PF00364 Biotin-requiring enzyme INS88_RS04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS04340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_RS04350 PF02789 Cytosol aminopeptidase family, N-terminal domain INS88_RS04350 PF00883 Cytosol aminopeptidase family, catalytic domain INS88_RS04365 PF07687 Peptidase dimerisation domain INS88_RS04365 PF01546 Peptidase family M20/M25/M40 INS88_RS04375 PF01521 Iron-sulphur cluster biosynthesis INS88_RS04385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain INS88_RS04385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain INS88_RS04405 PF01541 GIY-YIG catalytic domain INS88_RS04405 PF00929 Exonuclease INS88_RS04415 PF00365 Phosphofructokinase INS88_RS04420 PF01474 Class-II DAHP synthetase family INS88_RS04425 PF00069 Protein kinase domain INS88_RS04425 PF03793 PASTA domain INS88_RS04430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain INS88_RS04430 PF01464 Transglycosylase SLT domain INS88_RS04440 PF00348 Polyprenyl synthetase INS88_RS04455 PF04542 Sigma-70 region 2 INS88_RS04455 PF00140 Sigma-70 factor, region 1.2 INS88_RS04455 PF04539 Sigma-70 region 3 INS88_RS04455 PF04545 Sigma-70, region 4 INS88_RS04460 PF14579 Helix-hairpin-helix motif INS88_RS04460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INS88_RS04460 PF00929 Exonuclease INS88_RS04460 PF02811 PHP domain INS88_RS04460 PF01336 OB-fold nucleic acid binding domain INS88_RS04460 PF11490 DNA polymerase III polC-type N-terminus II INS88_RS04460 PF07733 Bacterial DNA polymerase III alpha NTPase domain INS88_RS04470 PF00204 DNA gyrase B INS88_RS04470 PF00986 DNA gyrase B subunit, carboxyl terminus INS88_RS04470 PF01751 Toprim domain INS88_RS04470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS04485 PF03989 DNA gyrase C-terminal domain, beta-propeller INS88_RS04485 PF00521 DNA gyrase/topoisomerase IV, subunit A INS88_RS04525 PF02254 TrkA-N domain INS88_RS04525 PF02080 TrkA-C domain INS88_RS04530 PF02254 TrkA-N domain INS88_RS04530 PF02080 TrkA-C domain INS88_RS04540 PF05958 tRNA (Uracil-5-)-methyltransferase INS88_RS04545 PF00694 Aconitase C-terminal domain INS88_RS04545 PF00330 Aconitase family (aconitate hydratase) INS88_RS04550 PF00665 Integrase core domain INS88_RS04550 PF13936 Helix-turn-helix domain INS88_RS04555 PF13292 1-deoxy-D-xylulose-5-phosphate synthase INS88_RS04555 PF02779 Transketolase, pyrimidine binding domain INS88_RS04555 PF02780 Transketolase, C-terminal domain INS88_RS04560 PF00570 HRDC domain INS88_RS04560 PF01612 3'-5' exonuclease INS88_RS04570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_RS04570 PF00128 Alpha amylase, catalytic domain INS88_RS04575 PF00128 Alpha amylase, catalytic domain INS88_RS04580 PF00128 Alpha amylase, catalytic domain INS88_RS04580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) INS88_RS04620 PF00072 Response regulator receiver domain INS88_RS04620 PF00196 Bacterial regulatory proteins, luxR family INS88_RS04625 PF03313 Serine dehydratase alpha chain INS88_RS04625 PF03315 Serine dehydratase beta chain INS88_RS04630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_RS04630 PF03129 Anticodon binding domain INS88_RS04630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INS88_RS04635 PF01066 CDP-alcohol phosphatidyltransferase INS88_RS04645 PF13439 Glycosyltransferase Family 4 INS88_RS04660 PF03099 Biotin/lipoate A/B protein ligase family INS88_RS04660 PF00293 NUDIX domain INS88_RS04665 PF01709 Transcriptional regulator INS88_RS04670 PF02075 Crossover junction endodeoxyribonuclease RuvC INS88_RS04675 PF01330 RuvA N terminal domain INS88_RS04675 PF07499 RuvA, C-terminal domain INS88_RS04680 PF17864 RuvB AAA lid domain INS88_RS04680 PF05496 Holliday junction DNA helicase RuvB P-loop domain INS88_RS04680 PF05491 RuvB C-terminal winged helix domain INS88_RS04690 PF07549 SecD/SecF GG Motif INS88_RS04690 PF02355 Protein export membrane protein INS88_RS04695 PF07549 SecD/SecF GG Motif INS88_RS04695 PF02355 Protein export membrane protein INS88_RS04700 PF00156 Phosphoribosyl transferase domain INS88_RS04705 PF13291 ACT domain INS88_RS04705 PF04607 Region found in RelA / SpoT proteins INS88_RS04705 PF02824 TGS domain INS88_RS04715 PF03993 Domain of Unknown Function (DUF349) INS88_RS04720 PF00753 Metallo-beta-lactamase superfamily INS88_RS04725 PF13393 Histidyl-tRNA synthetase INS88_RS04725 PF03129 Anticodon binding domain INS88_RS04730 PF01926 50S ribosome-binding GTPase INS88_RS04730 PF07650 KH domain INS88_RS04735 PF01926 50S ribosome-binding GTPase INS88_RS04735 PF12631 MnmE helical domain INS88_RS04735 PF10396 GTP-binding protein TrmE N-terminus INS88_RS04745 PF03880 DbpA RNA binding domain INS88_RS04745 PF00270 DEAD/DEAH box helicase INS88_RS04745 PF00271 Helicase conserved C-terminal domain INS88_RS04750 PF07690 Major Facilitator Superfamily INS88_RS04755 PF02938 GAD domain INS88_RS04755 PF00152 tRNA synthetases class II (D, K and N) INS88_RS04755 PF01336 OB-fold nucleic acid binding domain INS88_RS04770 PF03176 MMPL family INS88_RS04775 PF00004 ATPase family associated with various cellular activities (AAA) INS88_RS04775 PF16193 AAA C-terminal domain INS88_RS04775 PF12002 MgsA AAA+ ATPase C terminal INS88_RS04780 PF00163 Ribosomal protein S4/S9 N-terminal domain INS88_RS04780 PF01479 S4 domain INS88_RS04790 PF02272 DHHA1 domain INS88_RS04790 PF01411 tRNA synthetases class II (A) INS88_RS04790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain INS88_RS04795 PF03652 Holliday junction resolvase INS88_RS04815 PF01264 Chorismate synthase INS88_RS04820 PF01202 Shikimate kinase INS88_RS04820 PF01761 3-dehydroquinate synthase INS88_RS04835 PF09285 Elongation factor P, C-terminal INS88_RS04835 PF08207 Elongation factor P (EF-P) KOW-like domain INS88_RS04835 PF01132 Elongation factor P (EF-P) OB domain INS88_RS04840 PF01029 NusB family INS88_RS04845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain INS88_RS04845 PF00117 Glutamine amidotransferase class-I INS88_RS04850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INS88_RS04850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain INS88_RS04850 PF02142 MGS-like domain INS88_RS04860 PF00625 Guanylate kinase INS88_RS04865 PF01192 RNA polymerase Rpb6 INS88_RS04870 PF02441 Flavoprotein INS88_RS04870 PF04127 DNA / pantothenate metabolism flavoprotein INS88_RS04875 PF00438 S-adenosylmethionine synthetase, N-terminal domain INS88_RS04875 PF02772 S-adenosylmethionine synthetase, central domain INS88_RS04875 PF02773 S-adenosylmethionine synthetase, C-terminal domain INS88_RS04880 PF17764 3′ DNA-binding domain (3′BD) INS88_RS04885 PF02911 Formyl transferase, C-terminal domain INS88_RS04885 PF00551 Formyl transferase INS88_RS04890 PF01029 NusB family INS88_RS04890 PF01189 16S rRNA methyltransferase RsmB/F INS88_RS04895 PF00834 Ribulose-phosphate 3 epimerase family INS88_RS04900 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS04905 PF09084 NMT1/THI5 like INS88_RS04910 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase INS88_RS04915 PF08029 HisG, C-terminal domain INS88_RS04915 PF01634 ATP phosphoribosyltransferase INS88_RS04940 PF00781 Diacylglycerol kinase catalytic domain INS88_RS04945 PF00270 DEAD/DEAH box helicase INS88_RS04945 PF08148 DSHCT (NUC185) domain INS88_RS04945 PF00271 Helicase conserved C-terminal domain INS88_RS04950 PF00795 Carbon-nitrogen hydrolase INS88_RS04955 PF00535 Glycosyl transferase family 2 INS88_RS04960 PF13397 RNA polymerase-binding protein INS88_RS04970 PF13411 MerR HTH family regulatory protein INS88_RS04980 PF16697 Inner membrane component of T3SS, cytoplasmic domain INS88_RS04985 PF11838 ERAP1-like C-terminal domain INS88_RS04985 PF01433 Peptidase family M1 domain INS88_RS05000 PF00365 Phosphofructokinase INS88_RS05005 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal INS88_RS05005 PF01926 50S ribosome-binding GTPase INS88_RS05010 PF02224 Cytidylate kinase INS88_RS05015 PF00849 RNA pseudouridylate synthase INS88_RS05015 PF01479 S4 domain INS88_RS05020 PF04079 Segregation and condensation complex subunit ScpB INS88_RS05025 PF02616 Segregation and condensation protein ScpA INS88_RS05030 PF13614 AAA domain INS88_RS05035 PF00589 Phage integrase family INS88_RS05035 PF02899 Phage integrase, N-terminal SAM-like domain INS88_RS05040 PF02779 Transketolase, pyrimidine binding domain INS88_RS05040 PF00456 Transketolase, thiamine diphosphate binding domain INS88_RS05040 PF02780 Transketolase, C-terminal domain INS88_RS05045 PF00923 Transaldolase/Fructose-6-phosphate aldolase INS88_RS05050 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain INS88_RS05050 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain INS88_RS05060 PF03840 Preprotein translocase SecG subunit INS88_RS05065 PF00121 Triosephosphate isomerase INS88_RS05070 PF00162 Phosphoglycerate kinase INS88_RS05075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain INS88_RS05075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain INS88_RS05080 PF14527 WhiA LAGLIDADG-like domain INS88_RS05080 PF10298 WhiA N-terminal LAGLIDADG-like domain INS88_RS05080 PF02650 WhiA C-terminal HTH domain INS88_RS05085 PF01933 Uncharacterised protein family UPF0052 INS88_RS05090 PF03668 P-loop ATPase protein family INS88_RS05095 PF01541 GIY-YIG catalytic domain INS88_RS05095 PF02151 UvrB/uvrC motif INS88_RS05095 PF08459 UvrC Helix-hairpin-helix N-terminal INS88_RS05100 PF17760 UvrA interaction domain INS88_RS05100 PF17755 UvrA DNA-binding domain INS88_RS05100 PF00005 ABC transporter INS88_RS05110 PF13593 SBF-like CPA transporter family (DUF4137) INS88_RS05115 PF03741 Integral membrane protein TerC family INS88_RS05120 PF17757 UvrB interaction domain INS88_RS05120 PF02151 UvrB/uvrC motif INS88_RS05120 PF04851 Type III restriction enzyme, res subunit INS88_RS05120 PF00271 Helicase conserved C-terminal domain INS88_RS05120 PF12344 Ultra-violet resistance protein B INS88_RS05125 PF01121 Dephospho-CoA kinase INS88_RS05130 PF01470 Pyroglutamyl peptidase INS88_RS05135 PF00575 S1 RNA binding domain INS88_RS05140 PF08241 Methyltransferase domain INS88_RS05145 PF01367 5'-3' exonuclease, C-terminal SAM fold INS88_RS05145 PF00476 DNA polymerase family A INS88_RS05145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain INS88_RS05155 PF00072 Response regulator receiver domain INS88_RS05155 PF03861 ANTAR domain INS88_RS05165 PF00224 Pyruvate kinase, barrel domain INS88_RS05165 PF02887 Pyruvate kinase, alpha/beta domain INS88_RS05170 PF01790 Prolipoprotein diacylglyceryl transferase INS88_RS05175 PF00290 Tryptophan synthase alpha chain INS88_RS05180 PF00291 Pyridoxal-phosphate dependent enzyme INS88_RS05185 PF00218 Indole-3-glycerol phosphate synthase INS88_RS05190 PF01502 Phosphoribosyl-AMP cyclohydrolase INS88_RS05195 PF00977 Histidine biosynthesis protein INS88_RS05210 PF03136 Pup-ligase protein INS88_RS05215 PF05639 Pup-like protein INS88_RS05220 PF03136 Pup-ligase protein INS88_RS05225 PF00004 ATPase family associated with various cellular activities (AAA) INS88_RS05225 PF16450 Proteasomal ATPase OB C-terminal domain INS88_RS05225 PF17758 Proteasomal ATPase OB N-terminal domain INS88_RS05230 PF08704 tRNA methyltransferase complex GCD14 subunit INS88_RS05240 PF13419 Haloacid dehalogenase-like hydrolase INS88_RS05245 PF02673 Bacitracin resistance protein BacA INS88_RS05260 PF07687 Peptidase dimerisation domain INS88_RS05260 PF01546 Peptidase family M20/M25/M40 INS88_RS05265 PF04107 Glutamate-cysteine ligase family 2(GCS2) INS88_RS05270 PF00117 Glutamine amidotransferase class-I INS88_RS05270 PF00958 GMP synthase C terminal domain INS88_RS05275 PF01488 Shikimate / quinate 5-dehydrogenase INS88_RS05275 PF08501 Shikimate dehydrogenase substrate binding domain INS88_RS05275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain INS88_RS05295 PF01336 OB-fold nucleic acid binding domain INS88_RS05295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain INS88_RS05295 PF02811 PHP domain INS88_RS05295 PF07733 Bacterial DNA polymerase III alpha NTPase domain INS88_RS05295 PF14579 Helix-hairpin-helix motif INS88_RS05310 PF01161 Phosphatidylethanolamine-binding protein INS88_RS05315 PF00588 SpoU rRNA Methylase family INS88_RS05330 PF00588 SpoU rRNA Methylase family INS88_RS05335 PF01145 SPFH domain / Band 7 family INS88_RS05345 PF00005 ABC transporter INS88_RS05350 PF13439 Glycosyltransferase Family 4 INS88_RS05350 PF00534 Glycosyl transferases group 1 INS88_RS05355 PF00483 Nucleotidyl transferase INS88_RS05375 PF12848 ABC transporter INS88_RS05375 PF00005 ABC transporter INS88_RS05380 PF04228 Putative neutral zinc metallopeptidase INS88_RS05385 PF00581 Rhodanese-like domain INS88_RS05390 PF01883 Iron-sulfur cluster assembly protein INS88_RS05400 PF00266 Aminotransferase class-V INS88_RS05405 PF00005 ABC transporter INS88_RS05410 PF00355 Rieske [2Fe-2S] domain INS88_RS05415 PF01458 Uncharacterized protein family (UPF0051) INS88_RS05420 PF01458 Uncharacterized protein family (UPF0051) INS88_RS05435 PF03023 Lipid II flippase MurJ INS88_RS05455 PF02463 RecF/RecN/SMC N terminal domain INS88_RS05460 PF01513 ATP-NAD kinase INS88_RS05465 PF01728 FtsJ-like methyltransferase INS88_RS05465 PF01479 S4 domain INS88_RS05475 PF18407 GCN5-related N-acetyltransferase like domain INS88_RS05475 PF13344 Haloacid dehalogenase-like hydrolase INS88_RS05500 PF00950 ABC 3 transport family INS88_RS05505 PF00950 ABC 3 transport family INS88_RS05510 PF00005 ABC transporter INS88_RS05520 PF00579 tRNA synthetases class I (W and Y) INS88_RS05525 PF00005 ABC transporter INS88_RS05535 PF01381 Helix-turn-helix INS88_RS05540 PF14698 Argininosuccinate lyase C-terminal INS88_RS05540 PF00206 Lyase INS88_RS05545 PF16363 GDP-mannose 4,6 dehydratase INS88_RS05550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain INS88_RS05550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain INS88_RS05560 PF00764 Arginosuccinate synthase INS88_RS05565 PF01316 Arginine repressor, DNA binding domain INS88_RS05565 PF02863 Arginine repressor, C-terminal domain INS88_RS05570 PF00202 Aminotransferase class-III INS88_RS05575 PF00696 Amino acid kinase family INS88_RS05580 PF01960 ArgJ family INS88_RS05585 PF02774 Semialdehyde dehydrogenase, dimerisation domain INS88_RS05585 PF01118 Semialdehyde dehydrogenase, NAD binding domain INS88_RS05595 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus INS88_RS05595 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus INS88_RS05600 PF04073 Aminoacyl-tRNA editing domain INS88_RS05605 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain INS88_RS05605 PF03483 B3/4 domain INS88_RS05605 PF03484 tRNA synthetase B5 domain INS88_RS05605 PF03147 Ferredoxin-fold anticodon binding domain INS88_RS05605 PF01588 Putative tRNA binding domain INS88_RS05610 PF01409 tRNA synthetases class II core domain (F) INS88_RS05610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain INS88_RS05620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family INS88_RS05625 PF08032 RNA 2'-O ribose methyltransferase substrate binding INS88_RS05625 PF00588 SpoU rRNA Methylase family INS88_RS05635 PF00453 Ribosomal protein L20 INS88_RS05640 PF01632 Ribosomal protein L35 INS88_RS05645 PF00707 Translation initiation factor IF-3, C-terminal domain INS88_RS05645 PF05198 Translation initiation factor IF-3, N-terminal domain INS88_RS05655 PF00977 Histidine biosynthesis protein INS88_RS05660 PF00117 Glutamine amidotransferase class-I INS88_RS05670 PF00475 Imidazoleglycerol-phosphate dehydratase INS88_RS05675 PF00155 Aminotransferase class I and II INS88_RS05680 PF00815 Histidinol dehydrogenase INS88_RS05685 PF01255 Putative undecaprenyl diphosphate synthase INS88_RS05690 PF11967 Recombination protein O N terminal INS88_RS05690 PF02565 Recombination protein O C terminal INS88_RS05695 PF08502 LeuA allosteric (dimerisation) domain INS88_RS05695 PF00682 HMGL-like INS88_RS05700 PF13191 AAA ATPase domain INS88_RS05700 PF00069 Protein kinase domain INS88_RS05720 PF07650 KH domain INS88_RS05720 PF01926 50S ribosome-binding GTPase INS88_RS05725 PF00571 CBS domain INS88_RS05725 PF03471 Transporter associated domain INS88_RS05725 PF01595 Cyclin M transmembrane N-terminal domain INS88_RS05730 PF02130 Uncharacterized protein family UPF0054 INS88_RS05735 PF02562 PhoH-like protein INS88_RS05740 PF04452 RNA methyltransferase INS88_RS05745 PF01556 DnaJ C terminal domain INS88_RS05745 PF00684 DnaJ central domain INS88_RS05745 PF00226 DnaJ domain INS88_RS05750 PF08220 DeoR-like helix-turn-helix domain INS88_RS05750 PF01628 HrcA protein C terminal domain INS88_RS05765 PF04055 Radical SAM superfamily INS88_RS05770 PF02390 Putative methyltransferase INS88_RS05775 PF06421 GTP-binding protein LepA C-terminus INS88_RS05775 PF00009 Elongation factor Tu GTP binding domain INS88_RS05775 PF00679 Elongation factor G C-terminus INS88_RS05795 PF05532 CsbD-like INS88_RS05800 PF01649 Ribosomal protein S20 INS88_RS05805 PF02233 NAD(P) transhydrogenase beta subunit INS88_RS05810 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch INS88_RS05810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain INS88_RS05810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain INS88_RS05820 PF00753 Metallo-beta-lactamase superfamily INS88_RS05820 PF03772 Competence protein INS88_RS05825 PF10531 SLBB domain INS88_RS05830 PF05872 Bacterial protein of unknown function (DUF853) INS88_RS05840 PF09334 tRNA synthetases class I (M) INS88_RS05840 PF13603 Leucyl-tRNA synthetase, Domain 2 INS88_RS05840 PF08264 Anticodon-binding domain of tRNA INS88_RS05845 PF01230 HIT domain INS88_RS05860 PF01594 AI-2E family transporter INS88_RS05865 PF01048 Phosphorylase superfamily INS88_RS05870 PF00950 ABC 3 transport family INS88_RS05870 PF02742 Iron dependent repressor, metal binding and dimerisation domain INS88_RS05875 PF00265 Thymidine kinase INS88_RS05885 PF01022 Bacterial regulatory protein, arsR family INS88_RS05895 PF01297 Zinc-uptake complex component A periplasmic INS88_RS05895 PF01297 Zinc-uptake complex component A periplasmic INS88_RS05905 PF00005 ABC transporter INS88_RS05910 PF00950 ABC 3 transport family INS88_RS05915 PF00294 pfkB family carbohydrate kinase INS88_RS05930 PF01569 PAP2 superfamily INS88_RS05950 PF00324 Amino acid permease INS88_RS05960 PF05683 Fumarase C-terminus INS88_RS05960 PF05681 Fumarate hydratase (Fumerase) INS88_RS05965 PF00665 Integrase core domain INS88_RS05965 PF13936 Helix-turn-helix domain INS88_RS05970 PF09383 NIL domain INS88_RS05970 PF00005 ABC transporter INS88_RS05975 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS05980 PF03180 NLPA lipoprotein INS88_RS05985 PF00324 Amino acid permease INS88_RS05995 PF03591 AzlC protein INS88_RS06000 PF01136 Peptidase family U32 INS88_RS06000 PF16325 Peptidase family U32 C-terminal domain INS88_RS06005 PF01174 SNO glutamine amidotransferase family INS88_RS06010 PF01680 SOR/SNZ family INS88_RS06015 PF00392 Bacterial regulatory proteins, gntR family INS88_RS06025 PF01910 Thiamine-binding protein INS88_RS06040 PF00356 Bacterial regulatory proteins, lacI family INS88_RS06045 PF02836 Glycosyl hydrolases family 2, TIM barrel domain INS88_RS06045 PF00703 Glycosyl hydrolases family 2 INS88_RS06045 PF02837 Glycosyl hydrolases family 2, sugar binding domain INS88_RS06055 PF00933 Glycosyl hydrolase family 3 N terminal domain INS88_RS06070 PF01522 Polysaccharide deacetylase INS88_RS06075 PF00291 Pyridoxal-phosphate dependent enzyme INS88_RS06110 PF13276 HTH-like domain INS88_RS06110 PF13333 Integrase core domain INS88_RS06110 PF00665 Integrase core domain INS88_RS06120 PF01527 Transposase INS88_RS06120 PF00665 Integrase core domain INS88_RS06120 PF13276 HTH-like domain INS88_RS06120 PF13333 Integrase core domain INS88_RS06145 PF00005 ABC transporter INS88_RS06160 PF00239 Resolvase, N terminal domain INS88_RS06160 PF02796 Helix-turn-helix domain of resolvase INS88_RS06175 PF00300 Histidine phosphatase superfamily (branch 1) INS88_RS06190 PF01467 Cytidylyltransferase-like INS88_RS06195 PF00085 Thioredoxin INS88_RS06205 PF01018 GTP1/OBG INS88_RS06205 PF09269 Domain of unknown function (DUF1967) INS88_RS06205 PF01926 50S ribosome-binding GTPase INS88_RS06210 PF01016 Ribosomal L27 protein INS88_RS06215 PF00829 Ribosomal prokaryotic L21 protein INS88_RS06220 PF10150 Ribonuclease E/G family INS88_RS06225 PF01654 Cytochrome bd terminal oxidase subunit I INS88_RS06230 PF02322 Cytochrome bd terminal oxidase subunit II INS88_RS06235 PF00005 ABC transporter INS88_RS06235 PF00664 ABC transporter transmembrane region INS88_RS06240 PF00664 ABC transporter transmembrane region INS88_RS06240 PF00005 ABC transporter INS88_RS06245 PF13185 GAF domain INS88_RS06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS06245 PF07730 Histidine kinase INS88_RS06250 PF00664 ABC transporter transmembrane region INS88_RS06250 PF00005 ABC transporter INS88_RS06255 PF00005 ABC transporter INS88_RS06255 PF00664 ABC transporter transmembrane region INS88_RS06260 PF10417 C-terminal domain of 1-Cys peroxiredoxin INS88_RS06260 PF00578 AhpC/TSA family INS88_RS06265 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS06265 PF13192 Thioredoxin domain INS88_RS06270 PF00196 Bacterial regulatory proteins, luxR family INS88_RS06270 PF00072 Response regulator receiver domain INS88_RS06275 PF06827 Zinc finger found in FPG and IleRS INS88_RS06275 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain INS88_RS06275 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain INS88_RS06280 PF14622 Ribonuclease-III-like INS88_RS06280 PF00035 Double-stranded RNA binding motif INS88_RS06285 PF02620 Large ribosomal RNA subunit accumulation protein YceD INS88_RS06295 PF01467 Cytidylyltransferase-like INS88_RS06305 PF17191 RecG wedge domain INS88_RS06305 PF00271 Helicase conserved C-terminal domain INS88_RS06305 PF00270 DEAD/DEAH box helicase INS88_RS06310 PF00830 Ribosomal L28 family INS88_RS06320 PF02769 AIR synthase related protein, C-terminal domain INS88_RS06320 PF00586 AIR synthase related protein, N-terminal domain INS88_RS06325 PF03358 NADPH-dependent FMN reductase INS88_RS06330 PF01820 D-ala D-ala ligase N-terminus INS88_RS06330 PF07478 D-ala D-ala ligase C-terminus INS88_RS06340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) INS88_RS06350 PF03577 Peptidase family C69 INS88_RS06355 PF00694 Aconitase C-terminal domain INS88_RS06360 PF00330 Aconitase family (aconitate hydratase) INS88_RS06370 PF00534 Glycosyl transferases group 1 INS88_RS06370 PF13439 Glycosyltransferase Family 4 INS88_RS06385 PF06800 Sugar transport protein INS88_RS06390 PF01432 Peptidase family M3 INS88_RS06415 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS06420 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS06425 PF00356 Bacterial regulatory proteins, lacI family INS88_RS06440 PF00749 tRNA synthetases class I (E and Q), catalytic domain INS88_RS06445 PF00155 Aminotransferase class I and II INS88_RS06450 PF01557 Fumarylacetoacetate (FAA) hydrolase family INS88_RS06455 PF00501 AMP-binding enzyme INS88_RS06465 PF00578 AhpC/TSA family INS88_RS06480 PF01725 Ham1 family INS88_RS06485 PF01138 3' exoribonuclease family, domain 1 INS88_RS06485 PF03725 3' exoribonuclease family, domain 2 INS88_RS06490 PF12706 Beta-lactamase superfamily domain INS88_RS06495 PF01177 Asp/Glu/Hydantoin racemase INS88_RS06505 PF02617 ATP-dependent Clp protease adaptor protein ClpS INS88_RS06510 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain INS88_RS06510 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain INS88_RS06515 PF04851 Type III restriction enzyme, res subunit INS88_RS06525 PF00216 Bacterial DNA-binding protein INS88_RS06530 PF02080 TrkA-C domain INS88_RS06530 PF06826 Predicted Permease Membrane Region INS88_RS06545 PF02540 NAD synthase INS88_RS06560 PF02872 5'-nucleotidase, C-terminal domain INS88_RS06560 PF00149 Calcineurin-like phosphoesterase INS88_RS06580 PF00881 Nitroreductase family INS88_RS06600 PF06280 Fn3-like domain INS88_RS06600 PF00082 Subtilase family INS88_RS06600 PF02225 PA domain INS88_RS06600 PF00746 LPXTG cell wall anchor motif INS88_RS06665 PF07687 Peptidase dimerisation domain INS88_RS06665 PF01546 Peptidase family M20/M25/M40 INS88_RS06685 PF01548 Transposase INS88_RS06685 PF02371 Transposase IS116/IS110/IS902 family INS88_RS06700 PF05175 Methyltransferase small domain INS88_RS06700 PF17827 PrmC N-terminal domain INS88_RS06725 PF02581 Thiamine monophosphate synthase INS88_RS06730 PF02110 Hydroxyethylthiazole kinase family INS88_RS06735 PF00083 Sugar (and other) transporter INS88_RS06740 PF02581 Thiamine monophosphate synthase INS88_RS06740 PF08543 Phosphomethylpyrimidine kinase INS88_RS06740 PF03070 TENA/THI-4/PQQC family INS88_RS06750 PF17755 UvrA DNA-binding domain INS88_RS06750 PF17760 UvrA interaction domain INS88_RS06750 PF00005 ABC transporter INS88_RS06775 PF02016 LD-carboxypeptidase N-terminal domain INS88_RS06775 PF17676 LD-carboxypeptidase C-terminal domain INS88_RS06780 PF13344 Haloacid dehalogenase-like hydrolase INS88_RS06785 PF01668 SmpB protein INS88_RS06790 PF01551 Peptidase family M23 INS88_RS06790 PF08525 Opacity-associated protein A N-terminal motif INS88_RS06790 PF01476 LysM domain INS88_RS06795 PF18075 FtsX extracellular domain INS88_RS06800 PF00005 ABC transporter INS88_RS06805 PF03462 PCRF domain INS88_RS06805 PF00472 RF-1 domain INS88_RS06840 PF00437 Type II/IV secretion system protein INS88_RS06865 PF00580 UvrD/REP helicase N-terminal domain INS88_RS06865 PF00570 HRDC domain INS88_RS06865 PF13361 UvrD-like helicase C-terminal domain INS88_RS06880 PF00270 DEAD/DEAH box helicase INS88_RS06880 PF00271 Helicase conserved C-terminal domain INS88_RS06885 PF01914 MarC family integral membrane protein INS88_RS06895 PF00557 Metallopeptidase family M24 INS88_RS06895 PF05195 Aminopeptidase P, N-terminal domain INS88_RS06900 PF00571 CBS domain INS88_RS06900 PF03448 MgtE intracellular N domain INS88_RS06900 PF01769 Divalent cation transporter INS88_RS06910 PF10609 NUBPL iron-transfer P-loop NTPase INS88_RS06910 PF01883 Iron-sulfur cluster assembly protein INS88_RS06915 PF01596 O-methyltransferase INS88_RS06925 PF03641 Possible lysine decarboxylase INS88_RS06930 PF01048 Phosphorylase superfamily INS88_RS06935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INS88_RS06935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INS88_RS06935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INS88_RS06935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INS88_RS06940 PF01791 DeoC/LacD family aldolase INS88_RS06950 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain INS88_RS06950 PF02885 Glycosyl transferase family, helical bundle domain INS88_RS06950 PF00591 Glycosyl transferase family, a/b domain INS88_RS06955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INS88_RS06960 PF02653 Branched-chain amino acid transport system / permease component INS88_RS06965 PF02653 Branched-chain amino acid transport system / permease component INS88_RS06970 PF00005 ABC transporter INS88_RS06975 PF02608 ABC transporter substrate-binding protein PnrA-like INS88_RS06980 PF00483 Nucleotidyl transferase INS88_RS06980 PF01050 Mannose-6-phosphate isomerase INS88_RS06995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain INS88_RS06995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain INS88_RS07000 PF00464 Serine hydroxymethyltransferase INS88_RS07005 PF00551 Formyl transferase INS88_RS07010 PF02632 BioY family INS88_RS07015 PF01648 4'-phosphopantetheinyl transferase superfamily INS88_RS07020 PF00698 Acyl transferase domain INS88_RS07025 PF01039 Carboxyl transferase domain INS88_RS07030 PF00289 Biotin carboxylase, N-terminal domain INS88_RS07030 PF02785 Biotin carboxylase C-terminal domain INS88_RS07030 PF00364 Biotin-requiring enzyme INS88_RS07030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain INS88_RS07040 PF13088 BNR repeat-like domain INS88_RS07040 PF00754 F5/8 type C domain INS88_RS07040 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase INS88_RS07050 PF01494 FAD binding domain INS88_RS07055 PF01012 Electron transfer flavoprotein domain INS88_RS07055 PF00766 Electron transfer flavoprotein FAD-binding domain INS88_RS07060 PF01012 Electron transfer flavoprotein domain INS88_RS07070 PF16123 Hydroxyacylglutathione hydrolase C-terminus INS88_RS07070 PF00753 Metallo-beta-lactamase superfamily INS88_RS07075 PF00083 Sugar (and other) transporter INS88_RS07080 PF01575 MaoC like domain INS88_RS07085 PF13193 AMP-binding enzyme C-terminal domain INS88_RS07085 PF00501 AMP-binding enzyme INS88_RS07090 PF02515 CoA-transferase family III INS88_RS07095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain INS88_RS07095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain INS88_RS07095 PF02770 Acyl-CoA dehydrogenase, middle domain INS88_RS07100 PF07859 alpha/beta hydrolase fold INS88_RS07110 PF14602 Hexapeptide repeat of succinyl-transferase INS88_RS07110 PF12464 Maltose acetyltransferase INS88_RS07120 PF00056 lactate/malate dehydrogenase, NAD binding domain INS88_RS07120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain INS88_RS07135 PF00342 Phosphoglucose isomerase INS88_RS07140 PF00365 Phosphofructokinase INS88_RS07150 PF02142 MGS-like domain INS88_RS07150 PF01808 AICARFT/IMPCHase bienzyme INS88_RS07165 PF00549 CoA-ligase INS88_RS07165 PF02629 CoA binding domain INS88_RS07170 PF08442 ATP-grasp domain INS88_RS07170 PF00549 CoA-ligase INS88_RS07175 PF01757 Acyltransferase family INS88_RS07180 PF13361 UvrD-like helicase C-terminal domain INS88_RS07180 PF00580 UvrD/REP helicase N-terminal domain INS88_RS07185 PF08818 Domain of unknown function (DU1801) INS88_RS07200 PF00117 Glutamine amidotransferase class-I INS88_RS07200 PF02540 NAD synthase INS88_RS07200 PF00958 GMP synthase C terminal domain INS88_RS07205 PF00849 RNA pseudouridylate synthase INS88_RS07210 PF01515 Phosphate acetyl/butaryl transferase INS88_RS07210 PF07085 DRTGG domain INS88_RS07215 PF00871 Acetokinase family INS88_RS07230 PF00005 ABC transporter INS88_RS07240 PF00206 Lyase INS88_RS07240 PF10415 Fumarase C C-terminus INS88_RS07245 PF00478 IMP dehydrogenase / GMP reductase domain INS88_RS07255 PF00571 CBS domain INS88_RS07255 PF00478 IMP dehydrogenase / GMP reductase domain INS88_RS07260 PF02467 Transcription factor WhiB INS88_RS07265 PF02769 AIR synthase related protein, C-terminal domain INS88_RS07265 PF00586 AIR synthase related protein, N-terminal domain INS88_RS07265 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain INS88_RS07270 PF02844 Phosphoribosylglycinamide synthetase, N domain INS88_RS07270 PF02843 Phosphoribosylglycinamide synthetase, C domain INS88_RS07270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain INS88_RS07275 PF00551 Formyl transferase INS88_RS07280 PF00586 AIR synthase related protein, N-terminal domain INS88_RS07280 PF02769 AIR synthase related protein, C-terminal domain INS88_RS07285 PF13537 Glutamine amidotransferase domain INS88_RS07285 PF00156 Phosphoribosyl transferase domain INS88_RS07290 PF01259 SAICAR synthetase INS88_RS07295 PF00731 AIR carboxylase INS88_RS07305 PF00166 Chaperonin 10 Kd subunit INS88_RS07315 PF02535 ZIP Zinc transporter INS88_RS07320 PF00814 Glycoprotease family INS88_RS07325 PF00209 Sodium:neurotransmitter symporter family INS88_RS07335 PF13085 2Fe-2S iron-sulfur cluster binding domain INS88_RS07335 PF13183 4Fe-4S dicluster domain INS88_RS07340 PF00890 FAD binding domain INS88_RS07340 PF02910 Fumarate reductase flavoprotein C-term INS88_RS07355 PF00814 Glycoprotease family INS88_RS07365 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE INS88_RS07370 PF00842 Alanine racemase, C-terminal domain INS88_RS07370 PF01168 Alanine racemase, N-terminal domain INS88_RS07375 PF03853 YjeF-related protein N-terminus INS88_RS07375 PF01256 Carbohydrate kinase INS88_RS07380 PF01380 SIS domain INS88_RS07385 PF00485 Phosphoribulokinase / Uridine kinase family INS88_RS07390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I INS88_RS07390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III INS88_RS07390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain INS88_RS07390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II INS88_RS07395 PF00380 Ribosomal protein S9/S16 INS88_RS07400 PF00572 Ribosomal protein L13 INS88_RS07410 PF07155 ECF-type riboflavin transporter, S component INS88_RS07415 PF12558 ATP-binding cassette cobalt transporter INS88_RS07415 PF00005 ABC transporter INS88_RS07420 PF02361 Cobalt transport protein INS88_RS07425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family INS88_RS07425 PF03466 LysR substrate binding domain INS88_RS07435 PF01416 tRNA pseudouridine synthase INS88_RS07440 PF00480 ROK family INS88_RS07450 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS07455 PF00005 ABC transporter INS88_RS07460 PF01022 Bacterial regulatory protein, arsR family INS88_RS07470 PF01451 Low molecular weight phosphotyrosine protein phosphatase INS88_RS07480 PF07739 TipAS antibiotic-recognition domain INS88_RS07480 PF13411 MerR HTH family regulatory protein INS88_RS07485 PF01196 Ribosomal protein L17 INS88_RS07490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain INS88_RS07490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain INS88_RS07490 PF01000 RNA polymerase Rpb3/RpoA insert domain INS88_RS07495 PF00411 Ribosomal protein S11 INS88_RS07500 PF00416 Ribosomal protein S13/S18 INS88_RS07505 PF00444 Ribosomal protein L36 INS88_RS07510 PF01176 Translation initiation factor 1A / IF-1 INS88_RS07515 PF00557 Metallopeptidase family M24 INS88_RS07525 PF00344 SecY translocase INS88_RS07535 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A INS88_RS07540 PF00327 Ribosomal protein L30p/L7e INS88_RS07545 PF00333 Ribosomal protein S5, N-terminal domain INS88_RS07545 PF03719 Ribosomal protein S5, C-terminal domain INS88_RS07550 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast INS88_RS07555 PF00347 Ribosomal protein L6 INS88_RS07560 PF00410 Ribosomal protein S8 INS88_RS07565 PF00253 Ribosomal protein S14p/S29e INS88_RS07570 PF00281 Ribosomal protein L5 INS88_RS07570 PF00673 ribosomal L5P family C-terminus INS88_RS07575 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 INS88_RS07580 PF00238 Ribosomal protein L14p/L23e INS88_RS07585 PF00366 Ribosomal protein S17 INS88_RS07590 PF00831 Ribosomal L29 protein INS88_RS07595 PF00252 Ribosomal protein L16p/L10e INS88_RS07600 PF00189 Ribosomal protein S3, C-terminal domain INS88_RS07600 PF07650 KH domain INS88_RS07605 PF00237 Ribosomal protein L22p/L17e INS88_RS07610 PF00203 Ribosomal protein S19 INS88_RS07615 PF00181 Ribosomal Proteins L2, RNA binding domain INS88_RS07615 PF03947 Ribosomal Proteins L2, C-terminal domain INS88_RS07620 PF00276 Ribosomal protein L23 INS88_RS07625 PF00573 Ribosomal protein L4/L1 family INS88_RS07630 PF00297 Ribosomal protein L3 INS88_RS07635 PF00338 Ribosomal protein S10p/S20e INS88_RS07640 PF13419 Haloacid dehalogenase-like hydrolase INS88_RS07645 PF03144 Elongation factor Tu domain 2 INS88_RS07645 PF00009 Elongation factor Tu GTP binding domain INS88_RS07645 PF03143 Elongation factor Tu C-terminal domain INS88_RS07650 PF00009 Elongation factor Tu GTP binding domain INS88_RS07650 PF00679 Elongation factor G C-terminus INS88_RS07650 PF14492 Elongation Factor G, domain II INS88_RS07650 PF03764 Elongation factor G, domain IV INS88_RS07650 PF03144 Elongation factor Tu domain 2 INS88_RS07655 PF00177 Ribosomal protein S7p/S5e INS88_RS07660 PF00164 Ribosomal protein S12/S23 INS88_RS07665 PF00324 Amino acid permease INS88_RS07670 PF04998 RNA polymerase Rpb1, domain 5 INS88_RS07670 PF04983 RNA polymerase Rpb1, domain 3 INS88_RS07670 PF05000 RNA polymerase Rpb1, domain 4 INS88_RS07670 PF00623 RNA polymerase Rpb1, domain 2 INS88_RS07670 PF04997 RNA polymerase Rpb1, domain 1 INS88_RS07675 PF04565 RNA polymerase Rpb2, domain 3 INS88_RS07675 PF04560 RNA polymerase Rpb2, domain 7 INS88_RS07675 PF04563 RNA polymerase beta subunit INS88_RS07675 PF04561 RNA polymerase Rpb2, domain 2 INS88_RS07675 PF10385 RNA polymerase beta subunit external 1 domain INS88_RS07675 PF00562 RNA polymerase Rpb2, domain 6 INS88_RS07680 PF00542 Ribosomal protein L7/L12 C-terminal domain INS88_RS07680 PF16320 Ribosomal protein L7/L12 dimerisation domain INS88_RS07685 PF00466 Ribosomal protein L10 INS88_RS07690 PF00485 Phosphoribulokinase / Uridine kinase family INS88_RS07695 PF00687 Ribosomal protein L1p/L10e family INS88_RS07700 PF00298 Ribosomal protein L11, RNA binding domain INS88_RS07700 PF03946 Ribosomal protein L11, N-terminal domain INS88_RS07705 PF02357 Transcription termination factor nusG INS88_RS07710 PF00584 SecE/Sec61-gamma subunits of protein translocation complex INS88_RS07720 PF00155 Aminotransferase class I and II INS88_RS07730 PF00962 Adenosine/AMP deaminase INS88_RS07745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain INS88_RS07745 PF01565 FAD binding domain INS88_RS07750 PF00471 Ribosomal protein L33 INS88_RS07770 PF04461 Protein of unknown function (DUF520) INS88_RS07775 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS07780 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus INS88_RS07780 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein INS88_RS07790 PF10646 Sporulation and spore germination INS88_RS07790 PF10647 Lipoprotein LpqB beta-propeller domain INS88_RS07795 PF00672 HAMP domain INS88_RS07795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS07795 PF00512 His Kinase A (phospho-acceptor) domain INS88_RS07800 PF00072 Response regulator receiver domain INS88_RS07800 PF00486 Transcriptional regulatory protein, C terminal INS88_RS07820 PF07726 ATPase family associated with various cellular activities (AAA) INS88_RS07820 PF17863 AAA lid domain INS88_RS07860 PF02467 Transcription factor WhiB INS88_RS07865 PF00459 Inositol monophosphatase family INS88_RS07875 PF01758 Sodium Bile acid symporter family INS88_RS07880 PF00483 Nucleotidyl transferase INS88_RS07885 PF04321 RmlD substrate binding domain INS88_RS07910 PF00005 ABC transporter INS88_RS07910 PF14524 Wzt C-terminal domain INS88_RS07920 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain INS88_RS07920 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain INS88_RS07920 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain INS88_RS07935 PF02350 UDP-N-acetylglucosamine 2-epimerase INS88_RS07970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold INS88_RS07970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain INS88_RS07975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family INS88_RS07980 PF00132 Bacterial transferase hexapeptide (six repeats) INS88_RS07980 PF12804 MobA-like NTP transferase domain INS88_RS07995 PF16363 GDP-mannose 4,6 dehydratase INS88_RS08015 PF03816 Cell envelope-related transcriptional attenuator domain INS88_RS08025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS08025 PF08521 Two-component sensor kinase N-terminal INS88_RS08025 PF00512 His Kinase A (phospho-acceptor) domain INS88_RS08030 PF00486 Transcriptional regulatory protein, C terminal INS88_RS08030 PF00072 Response regulator receiver domain INS88_RS08035 PF00211 Adenylate and Guanylate cyclase catalytic domain INS88_RS08035 PF16701 Adenylate cyclase regulatory domain INS88_RS08045 PF02545 Maf-like protein INS88_RS08055 PF00285 Citrate synthase, C-terminal domain INS88_RS08060 PF00155 Aminotransferase class I and II INS88_RS08065 PF00037 4Fe-4S binding domain INS88_RS08080 PF03144 Elongation factor Tu domain 2 INS88_RS08080 PF00009 Elongation factor Tu GTP binding domain INS88_RS08080 PF14492 Elongation Factor G, domain II INS88_RS08080 PF00679 Elongation factor G C-terminus INS88_RS08090 PF00664 ABC transporter transmembrane region INS88_RS08090 PF00005 ABC transporter INS88_RS08095 PF00005 ABC transporter INS88_RS08095 PF00664 ABC transporter transmembrane region INS88_RS08100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle INS88_RS08105 PF00005 ABC transporter INS88_RS08105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region INS88_RS08110 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS08110 PF12911 N-terminal TM domain of oligopeptide transport permease C INS88_RS08115 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS08120 PF03099 Biotin/lipoate A/B protein ligase family INS88_RS08125 PF04055 Radical SAM superfamily INS88_RS08130 PF00501 AMP-binding enzyme INS88_RS08130 PF13193 AMP-binding enzyme C-terminal domain INS88_RS08135 PF02127 Aminopeptidase I zinc metalloprotease (M18) INS88_RS08150 PF03971 Monomeric isocitrate dehydrogenase INS88_RS08155 PF04143 Sulphur transport INS88_RS08160 PF01206 Sulfurtransferase TusA INS88_RS08180 PF01226 Formate/nitrite transporter INS88_RS08190 PF02525 Flavodoxin-like fold INS88_RS08200 PF01327 Polypeptide deformylase INS88_RS08205 PF01741 Large-conductance mechanosensitive channel, MscL INS88_RS08220 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS08235 PF00881 Nitroreductase family INS88_RS08260 PF06965 Na+/H+ antiporter 1 INS88_RS08260 PF13462 Thioredoxin INS88_RS08295 PF12161 HsdM N-terminal domain INS88_RS08295 PF02384 N-6 DNA Methylase INS88_RS08310 PF13408 Recombinase zinc beta ribbon domain INS88_RS08310 PF07508 Recombinase INS88_RS08310 PF00239 Resolvase, N terminal domain INS88_RS08330 PF07690 Major Facilitator Superfamily INS88_RS08335 PF00440 Bacterial regulatory proteins, tetR family INS88_RS08335 PF02909 Tetracyclin repressor-like, C-terminal domain INS88_RS08375 PF05105 Bacteriophage holin family INS88_RS08445 PF00574 Clp protease INS88_RS08450 PF04860 Phage portal protein INS88_RS08465 PF03354 Phage Terminase INS88_RS08500 PF13276 HTH-like domain INS88_RS08500 PF00665 Integrase core domain INS88_RS08520 PF01381 Helix-turn-helix INS88_RS08550 PF01926 50S ribosome-binding GTPase INS88_RS08550 PF06071 Protein of unknown function (DUF933) INS88_RS08555 PF02646 RmuC family INS88_RS08560 PF02401 LytB protein INS88_RS08565 PF02601 Exonuclease VII, large subunit INS88_RS08565 PF13742 OB-fold nucleic acid binding domain INS88_RS08570 PF02609 Exonuclease VII small subunit INS88_RS08575 PF00294 pfkB family carbohydrate kinase INS88_RS08580 PF01255 Putative undecaprenyl diphosphate synthase INS88_RS08585 PF03006 Haemolysin-III related INS88_RS08590 PF03976 Polyphosphate kinase 2 (PPK2) INS88_RS08595 PF03976 Polyphosphate kinase 2 (PPK2) INS88_RS08600 PF02585 GlcNAc-PI de-N-acetylase INS88_RS08605 PF01272 Transcription elongation factor, GreA/GreB, C-term INS88_RS08605 PF03449 Transcription elongation factor, N-terminal INS88_RS08610 PF01625 Peptide methionine sulfoxide reductase INS88_RS08620 PF00474 Sodium:solute symporter family INS88_RS08625 PF00171 Aldehyde dehydrogenase family INS88_RS08640 PF00005 ABC transporter INS88_RS08655 PF00005 ABC transporter INS88_RS08670 PF06965 Na+/H+ antiporter 1 INS88_RS08675 PF02541 Ppx/GppA phosphatase family INS88_RS08695 PF03952 Enolase, N-terminal domain INS88_RS08695 PF00113 Enolase, C-terminal TIM barrel domain INS88_RS08700 PF01156 Inosine-uridine preferring nucleoside hydrolase INS88_RS08705 PF02559 CarD-like/TRCF domain INS88_RS08705 PF17757 UvrB interaction domain INS88_RS08705 PF00271 Helicase conserved C-terminal domain INS88_RS08705 PF00270 DEAD/DEAH box helicase INS88_RS08705 PF03461 TRCF domain INS88_RS08710 PF01195 Peptidyl-tRNA hydrolase INS88_RS08720 PF14693 Ribosomal protein TL5, C-terminal domain INS88_RS08720 PF01386 Ribosomal L25p family INS88_RS08725 PF00005 ABC transporter INS88_RS08730 PF14572 Phosphoribosyl synthetase-associated domain INS88_RS08730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase INS88_RS08735 PF00132 Bacterial transferase hexapeptide (six repeats) INS88_RS08735 PF12804 MobA-like NTP transferase domain INS88_RS08750 PF00005 ABC transporter INS88_RS08750 PF13732 Domain of unknown function (DUF4162) INS88_RS08765 PF16326 ABC transporter C-terminal domain INS88_RS08765 PF12848 ABC transporter INS88_RS08765 PF00005 ABC transporter INS88_RS08770 PF08544 GHMP kinases C terminal INS88_RS08770 PF00288 GHMP kinases N terminal domain INS88_RS08775 PF00398 Ribosomal RNA adenine dimethylase INS88_RS08785 PF01026 TatD related DNase INS88_RS08790 PF09334 tRNA synthetases class I (M) INS88_RS08795 PF17802 Prealbumin-like fold domain INS88_RS08795 PF08341 Thioester domain INS88_RS08800 PF00857 Isochorismatase family INS88_RS08805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases INS88_RS08820 PF01053 Cys/Met metabolism PLP-dependent enzyme INS88_RS08830 PF00005 ABC transporter INS88_RS08845 PF05175 Methyltransferase small domain INS88_RS08850 PF00248 Aldo/keto reductase family INS88_RS08855 PF02028 BCCT, betaine/carnitine/choline family transporter INS88_RS08860 PF01594 AI-2E family transporter INS88_RS08870 PF00005 ABC transporter INS88_RS08875 PF01032 FecCD transport family INS88_RS08880 PF08768 Domain of unknown function (DUF1794) INS88_RS08885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain INS88_RS08885 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS08905 PF01336 OB-fold nucleic acid binding domain INS88_RS08905 PF16995 Transmembrane region of lysyl-tRNA synthetase INS88_RS08905 PF00152 tRNA synthetases class II (D, K and N) INS88_RS08905 PF09924 Uncharacterised conserved protein (DUF2156) INS88_RS08910 PF02652 L-lactate permease INS88_RS08915 PF02754 Cysteine-rich domain INS88_RS08920 PF13183 4Fe-4S dicluster domain INS88_RS08920 PF11870 Domain of unknown function (DUF3390) INS88_RS08920 PF02589 LUD domain INS88_RS08925 PF02589 LUD domain INS88_RS08945 PF00381 PTS HPr component phosphorylation site INS88_RS08950 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 INS88_RS08955 PF02378 Phosphotransferase system, EIIC INS88_RS08955 PF00367 phosphotransferase system, EIIB INS88_RS08970 PF13732 Domain of unknown function (DUF4162) INS88_RS08970 PF00005 ABC transporter INS88_RS08975 PF00293 NUDIX domain INS88_RS08985 PF05524 PEP-utilising enzyme, N-terminal INS88_RS08985 PF00391 PEP-utilising enzyme, mobile domain INS88_RS08985 PF02896 PEP-utilising enzyme, TIM barrel domain INS88_RS09000 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 INS88_RS09000 PF00367 phosphotransferase system, EIIB INS88_RS09000 PF02378 Phosphotransferase system, EIIC INS88_RS09020 PF05167 Uncharacterised ACR (DUF711) INS88_RS09030 PF00444 Ribosomal protein L36 INS88_RS09035 PF01197 Ribosomal protein L31 INS88_RS09040 PF00253 Ribosomal protein S14p/S29e INS88_RS09045 PF00471 Ribosomal protein L33 INS88_RS09050 PF00830 Ribosomal L28 family INS88_RS09055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_RS09055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain INS88_RS09055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_RS09055 PF00205 Thiamine pyrophosphate enzyme, central domain INS88_RS09055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain INS88_RS09055 PF00205 Thiamine pyrophosphate enzyme, central domain INS88_RS09070 PF00083 Sugar (and other) transporter INS88_RS09075 PF07859 alpha/beta hydrolase fold INS88_RS09080 PF07702 UTRA domain INS88_RS09080 PF00392 Bacterial regulatory proteins, gntR family INS88_RS09085 PF00005 ABC transporter INS88_RS09090 PF01032 FecCD transport family INS88_RS09095 PF01032 FecCD transport family INS88_RS09100 PF01497 Periplasmic binding protein INS88_RS09110 PF00005 ABC transporter INS88_RS09145 PF03454 MoeA C-terminal region (domain IV) INS88_RS09145 PF03453 MoeA N-terminal region (domain I and II) INS88_RS09145 PF00994 Probable molybdopterin binding domain INS88_RS09180 PF00582 Universal stress protein family INS88_RS09185 PF00877 NlpC/P60 family INS88_RS09185 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain INS88_RS09190 PF18357 Diphteria toxin repressor SH3 domain INS88_RS09190 PF02742 Iron dependent repressor, metal binding and dimerisation domain INS88_RS09190 PF01325 Iron dependent repressor, N-terminal DNA binding domain INS88_RS09195 PF00266 Aminotransferase class-V INS88_RS09200 PF00860 Permease family INS88_RS09205 PF01238 Phosphomannose isomerase type I INS88_RS09210 PF11228 Protein of unknown function (DUF3027) INS88_RS09215 PF00313 'Cold-shock' DNA-binding domain INS88_RS09225 PF04012 PspA/IM30 family INS88_RS09235 PF00072 Response regulator receiver domain INS88_RS09235 PF00486 Transcriptional regulatory protein, C terminal INS88_RS09240 PF00672 HAMP domain INS88_RS09240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS09240 PF00512 His Kinase A (phospho-acceptor) domain INS88_RS09245 PF01553 Acyltransferase INS88_RS09245 PF00501 AMP-binding enzyme INS88_RS09250 PF00106 short chain dehydrogenase INS88_RS09260 PF00118 TCP-1/cpn60 chaperonin family INS88_RS09275 PF03167 Uracil DNA glycosylase superfamily INS88_RS09280 PF02838 Glycosyl hydrolase family 20, domain 2 INS88_RS09280 PF00728 Glycosyl hydrolase family 20, catalytic domain INS88_RS09280 PF03173 Putative carbohydrate binding domain INS88_RS09280 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain INS88_RS09285 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS09290 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS09295 PF01547 Bacterial extracellular solute-binding protein INS88_RS09310 PF00356 Bacterial regulatory proteins, lacI family INS88_RS09320 PF02899 Phage integrase, N-terminal SAM-like domain INS88_RS09320 PF00589 Phage integrase family INS88_RS09330 PF13614 AAA domain INS88_RS09395 PF01464 Transglycosylase SLT domain INS88_RS09435 PF00145 C-5 cytosine-specific DNA methylase INS88_RS09460 PF00145 C-5 cytosine-specific DNA methylase INS88_RS09560 PF00069 Protein kinase domain INS88_RS09560 PF00400 WD domain, G-beta repeat INS88_RS09565 PF17912 MalK OB fold domain INS88_RS09565 PF00005 ABC transporter INS88_RS09580 PF01547 Bacterial extracellular solute-binding protein INS88_RS09585 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS09590 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS09605 PF02774 Semialdehyde dehydrogenase, dimerisation domain INS88_RS09605 PF01118 Semialdehyde dehydrogenase, NAD binding domain INS88_RS09610 PF01842 ACT domain INS88_RS09610 PF13840 ACT domain INS88_RS09610 PF00696 Amino acid kinase family INS88_RS09615 PF13662 Toprim domain INS88_RS09615 PF02132 RecR protein INS88_RS09620 PF12169 DNA polymerase III subunits gamma and tau domain III INS88_RS09655 PF00860 Permease family INS88_RS09670 PF00588 SpoU rRNA Methylase family INS88_RS09670 PF08032 RNA 2'-O ribose methyltransferase substrate binding INS88_RS09675 PF01406 tRNA synthetases class I (C) catalytic domain INS88_RS09675 PF09190 DALR domain INS88_RS09685 PF00005 ABC transporter INS88_RS09700 PF02542 YgbB family INS88_RS09705 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase INS88_RS09710 PF02559 CarD-like/TRCF domain INS88_RS09715 PF00072 Response regulator receiver domain INS88_RS09715 PF00486 Transcriptional regulatory protein, C terminal INS88_RS09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS09720 PF00512 His Kinase A (phospho-acceptor) domain INS88_RS09725 PF01895 PhoU domain INS88_RS09735 PF00300 Histidine phosphatase superfamily (branch 1) INS88_RS09750 PF00746 LPXTG cell wall anchor motif INS88_RS09750 PF16555 Gram-positive pilin subunit D1, N-terminal domain INS88_RS09775 PF02899 Phage integrase, N-terminal SAM-like domain INS88_RS09775 PF00589 Phage integrase family INS88_RS09785 PF13614 AAA domain INS88_RS09805 PF02661 Fic/DOC family INS88_RS09825 PF03432 Relaxase/Mobilisation nuclease domain INS88_RS09900 PF00561 alpha/beta hydrolase fold INS88_RS09905 PF12169 DNA polymerase III subunits gamma and tau domain III INS88_RS09910 PF02223 Thymidylate kinase INS88_RS09915 PF01131 DNA topoisomerase INS88_RS09915 PF13368 Topoisomerase C-terminal repeat INS88_RS09915 PF01751 Toprim domain INS88_RS09920 PF17827 PrmC N-terminal domain INS88_RS09920 PF05175 Methyltransferase small domain INS88_RS09930 PF13443 Cro/C1-type HTH DNA-binding domain INS88_RS09935 PF09369 Domain of unknown function (DUF1998) INS88_RS09935 PF00270 DEAD/DEAH box helicase INS88_RS09935 PF00271 Helicase conserved C-terminal domain INS88_RS09965 PF00437 Type II/IV secretion system protein INS88_RS09980 PF00561 alpha/beta hydrolase fold INS88_RS09985 PF00730 HhH-GPD superfamily base excision DNA repair protein INS88_RS09985 PF00633 Helix-hairpin-helix motif INS88_RS09985 PF10576 Iron-sulfur binding domain of endonuclease III INS88_RS09990 PF00027 Cyclic nucleotide-binding domain INS88_RS09990 PF13545 Crp-like helix-turn-helix domain INS88_RS10005 PF02467 Transcription factor WhiB INS88_RS10010 PF00912 Transglycosylase INS88_RS10010 PF00905 Penicillin binding protein transpeptidase domain INS88_RS10025 PF02903 Alpha amylase, N-terminal ig-like domain INS88_RS10025 PF00128 Alpha amylase, catalytic domain INS88_RS10040 PF06463 Molybdenum Cofactor Synthesis C INS88_RS10040 PF04055 Radical SAM superfamily INS88_RS10045 PF02391 MoaE protein INS88_RS10050 PF01967 MoaC family INS88_RS10055 PF00994 Probable molybdopterin binding domain INS88_RS10055 PF03453 MoeA N-terminal region (domain I and II) INS88_RS10055 PF03454 MoeA C-terminal region (domain IV) INS88_RS10060 PF00994 Probable molybdopterin binding domain INS88_RS10070 PF00528 Binding-protein-dependent transport system inner membrane component INS88_RS10095 PF16555 Gram-positive pilin subunit D1, N-terminal domain INS88_RS10095 PF00746 LPXTG cell wall anchor motif INS88_RS10105 PF00899 ThiF family INS88_RS10105 PF00581 Rhodanese-like domain INS88_RS10120 PF08903 Domain of unknown function (DUF1846) INS88_RS10125 PF01548 Transposase INS88_RS10125 PF02371 Transposase IS116/IS110/IS902 family INS88_RS10130 PF05525 Branched-chain amino acid transport protein INS88_RS10140 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region INS88_RS10160 PF00535 Glycosyl transferase family 2 INS88_RS10170 PF00800 Prephenate dehydratase INS88_RS10170 PF01842 ACT domain INS88_RS10175 PF00781 Diacylglycerol kinase catalytic domain INS88_RS10180 PF02403 Seryl-tRNA synthetase N-terminal domain INS88_RS10180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) INS88_RS10210 PF00939 Sodium:sulfate symporter transmembrane region INS88_RS10235 PF01113 Dihydrodipicolinate reductase, N-terminus INS88_RS10235 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain INS88_RS10240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain INS88_RS10240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain INS88_RS10250 PF01867 CRISPR associated protein Cas1 INS88_RS10280 PF18019 HD domain INS88_RS10280 PF00270 DEAD/DEAH box helicase INS88_RS10280 PF18395 Cas3 C-terminal domain INS88_RS10290 PF05958 tRNA (Uracil-5-)-methyltransferase INS88_RS10305 PF00271 Helicase conserved C-terminal domain INS88_RS10305 PF04408 Helicase associated domain (HA2) INS88_RS10305 PF00270 DEAD/DEAH box helicase INS88_RS10305 PF08482 ATP-dependent helicase C-terminal INS88_RS10315 PF02254 TrkA-N domain INS88_RS10315 PF02080 TrkA-C domain INS88_RS10320 PF02386 Cation transport protein INS88_RS10340 PF00005 ABC transporter INS88_RS10340 PF02687 FtsX-like permease family INS88_RS10340 PF12704 MacB-like periplasmic core domain INS88_RS10345 PF12704 MacB-like periplasmic core domain INS88_RS10345 PF02687 FtsX-like permease family INS88_RS10345 PF00005 ABC transporter INS88_RS10360 PF00486 Transcriptional regulatory protein, C terminal INS88_RS10360 PF00072 Response regulator receiver domain INS88_RS10365 PF00512 His Kinase A (phospho-acceptor) domain INS88_RS10365 PF00672 HAMP domain INS88_RS10365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase INS88_RS10370 PF01702 Queuine tRNA-ribosyltransferase INS88_RS10380 PF01712 Deoxynucleoside kinase INS88_RS10400 PF00291 Pyridoxal-phosphate dependent enzyme INS88_RS10400 PF00585 C-terminal regulatory domain of Threonine dehydratase INS88_RS10415 PF00561 alpha/beta hydrolase fold INS88_RS10420 PF00248 Aldo/keto reductase family INS88_RS10425 PF08543 Phosphomethylpyrimidine kinase INS88_RS10435 PF13088 BNR repeat-like domain INS88_RS10435 PF00754 F5/8 type C domain INS88_RS10435 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase INS88_RS10440 PF00899 ThiF family INS88_RS10445 PF01026 TatD related DNase INS88_RS10450 PF07690 Major Facilitator Superfamily INS88_RS10455 PF00772 DnaB-like helicase N terminal domain INS88_RS10455 PF03796 DnaB-like helicase C terminal domain INS88_RS10475 PF03948 Ribosomal protein L9, C-terminal domain INS88_RS10475 PF01281 Ribosomal protein L9, N-terminal domain INS88_RS10480 PF01084 Ribosomal protein S18 INS88_RS10485 PF00436 Single-strand binding protein family INS88_RS10490 PF01250 Ribosomal protein S6 INS88_RS10495 PF00905 Penicillin binding protein transpeptidase domain INS88_RS10495 PF00912 Transglycosylase INS88_RS10500 PF01594 AI-2E family transporter INS88_RS10505 PF07690 Major Facilitator Superfamily INS88_RS10510 PF01743 Poly A polymerase head domain INS88_RS10510 PF12627 Probable RNA and SrmB- binding site of polymerase A INS88_RS10510 PF13735 tRNA nucleotidyltransferase domain 2 putative INS88_RS10515 PF00293 NUDIX domain INS88_RS10530 PF07992 Pyridine nucleotide-disulphide oxidoreductase INS88_RS10535 PF00155 Aminotransferase class I and II INS88_RS10540 PF07478 D-ala D-ala ligase C-terminus INS88_RS10540 PF01820 D-ala D-ala ligase N-terminus INS88_RS10545 PF02195 ParB-like nuclease domain INS88_RS10545 PF17762 HTH domain found in ParB protein INS88_RS10550 PF13614 AAA domain INS88_RS10555 PF02527 rRNA small subunit methyltransferase G INS88_RS10565 PF02096 60Kd inner membrane protein INS88_RS10570 PF01809 Putative membrane protein insertion efficiency factor INS88_RS10575 PF00825 Ribonuclease P INS88_RS10580 PF00468 Ribosomal protein L34