UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 SUPERFAMILY SSF57938 135 216 5.1E-17 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PRINTS PR00625 DnaJ domain signature 7 25 3.9E-19 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PRINTS PR00625 DnaJ domain signature 60 79 3.9E-19 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PRINTS PR00625 DnaJ domain signature 40 60 3.9E-19 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Gene3D G3DSA:2.60.260.20 261 338 5.7E-6 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 SUPERFAMILY SSF46565 1 102 1.83E-35 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PANTHER PTHR24078 119 364 2.5E-97 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PANTHER PTHR24078 1 103 2.5E-97 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 SMART SM00271 4 60 5.5E-29 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Pfam PF00684 DnaJ central domain 148 212 4.2E-12 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 32.404 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 356 5.3E-118 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Gene3D G3DSA:2.10.230.10 143 215 3.4E-18 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Pfam PF01556 DnaJ C terminal domain 121 340 9.5E-27 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Gene3D G3DSA:2.60.260.20 216 258 7.8E-10 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Gene3D G3DSA:2.60.260.20 120 142 7.8E-10 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PANTHER PTHR24078:SF190 119 364 2.5E-97 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 PANTHER PTHR24078:SF190 1 103 2.5E-97 T 22-04-2016 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 22-04-2016 IPR018253 DnaJ domain, conserved site UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 SUPERFAMILY SSF49493 120 153 1.7E-10 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 SUPERFAMILY SSF49493 218 258 1.7E-10 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Gene3D G3DSA:1.10.287.110 1 105 5.1E-35 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 Pfam PF00226 DnaJ domain 5 65 7.8E-25 T 22-04-2016 IPR001623 DnaJ domain UPA3_RS02135 c17f3981138183607df0f8e99bec84c6 375 SUPERFAMILY SSF49493 262 349 9.94E-10 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 Gene3D G3DSA:3.40.50.300 11 234 4.5E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 Gene3D G3DSA:3.40.50.300 305 527 3.5E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 PANTHER PTHR24220 13 286 7.7E-151 T 22-04-2016 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 PANTHER PTHR24220 304 414 7.7E-151 T 22-04-2016 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 SUPERFAMILY SSF52540 11 234 3.43E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 ProSitePatterns PS00211 ABC transporters family signature. 435 449 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 SMART SM00382 38 227 9.3E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 SUPERFAMILY SSF52540 306 524 8.42E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 PANTHER PTHR24220:SF239 13 286 7.7E-151 T 22-04-2016 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 PANTHER PTHR24220:SF239 304 414 7.7E-151 T 22-04-2016 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 Pfam PF00005 ABC transporter 307 462 5.1E-13 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 UPA3_RS00085 64fc131700809a1f1d080d1dd9eeaddc 535 Pfam PF00005 ABC transporter 30 179 1.0E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PIRSF PIRSF002133 1 137 3.2E-46 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PRINTS PR01034 Ribosomal protein S12 signature 71 90 5.3E-54 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PRINTS PR01034 Ribosomal protein S12 signature 90 107 5.3E-54 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PRINTS PR01034 Ribosomal protein S12 signature 40 55 5.3E-54 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PRINTS PR01034 Ribosomal protein S12 signature 55 70 5.3E-54 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PRINTS PR01034 Ribosomal protein S12 signature 107 123 5.3E-54 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PRINTS PR01034 Ribosomal protein S12 signature 123 135 5.3E-54 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 Gene3D G3DSA:2.40.50.140 1 138 1.2E-58 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 ProSitePatterns PS00055 Ribosomal protein S12 signature. 56 63 - T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 136 37.97 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 SUPERFAMILY SSF50249 3 137 1.11E-44 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 Pfam PF00164 Ribosomal protein S12/S23 3 136 8.2E-36 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 PANTHER PTHR11652 1 129 6.0E-63 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02810 f39210c6f128ba87d0c2b122ab4ae94f 141 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 137 1.0E-63 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 Pfam PF02767 DNA polymerase III beta subunit, central domain 161 252 1.9E-4 T 22-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 261 374 1.7E-7 T 22-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 Gene3D G3DSA:3.10.150.10 1 121 5.6E-12 T 22-04-2016 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 SUPERFAMILY SSF55979 1 121 4.5E-16 T 22-04-2016 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 4.4E-11 T 22-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 PANTHER PTHR30478 2 379 1.9E-32 T 22-04-2016 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 SUPERFAMILY SSF55979 261 374 2.35E-9 T 22-04-2016 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 Gene3D G3DSA:3.10.150.10 156 253 6.7E-6 T 22-04-2016 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 Gene3D G3DSA:3.10.150.10 260 374 3.3E-11 T 22-04-2016 UPA3_RS00410 6ee0b32204ea492f46ce31320dd48e07 379 SMART SM00480 16 375 1.5E-9 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 PANTHER PTHR10724 1 705 1.0E-235 T 22-04-2016 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Gene3D G3DSA:1.10.150.310 489 621 1.8E-35 T 22-04-2016 IPR023097 Tex RuvX-like domain UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Gene3D G3DSA:3.30.420.140 316 440 7.0E-45 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Gene3D G3DSA:1.10.3500.10 441 488 2.0E-70 T 22-04-2016 IPR023323 Tex-like domain UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Gene3D G3DSA:1.10.3500.10 110 312 2.0E-70 T 22-04-2016 IPR023323 Tex-like domain UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Pfam PF09371 Tex-like protein N-terminal domain 10 190 2.0E-53 T 22-04-2016 IPR018974 Tex-like protein, N-terminal UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Pfam PF12836 Helix-hairpin-helix motif 481 545 8.2E-21 T 22-04-2016 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Pfam PF16921 Tex protein YqgF-like domain 317 440 1.0E-48 T 22-04-2016 IPR032639 Tex protein, YqgF-like domain UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SUPERFAMILY SSF47781 550 623 4.0E-13 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SUPERFAMILY SSF50249 628 705 6.12E-13 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Gene3D G3DSA:2.40.50.140 633 705 5.3E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SUPERFAMILY SSF158832 5 310 1.28E-79 T 22-04-2016 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SMART SM00316 640 705 1.1E-9 T 22-04-2016 IPR022967 RNA-binding domain, S1 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SUPERFAMILY SSF53098 312 459 2.12E-42 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Pfam PF00575 S1 RNA binding domain 640 704 1.1E-5 T 22-04-2016 IPR003029 S1 domain GO:0003676 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 PANTHER PTHR10724:SF1 1 705 1.0E-235 T 22-04-2016 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 Gene3D G3DSA:1.10.10.650 4 107 1.1E-31 T 22-04-2016 IPR023319 Tex-like protein, HTH domain UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SMART SM00732 316 414 3.0E-32 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 UPA3_RS00155 342e7d64d2bf3c646922b510b16d72d5 706 SUPERFAMILY SSF47781 460 548 2.0E-21 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 UPA3_RS02955 09e7ad96fc14648e81116574cd17fb7d 160 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 17.531 T 22-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 UPA3_RS02955 09e7ad96fc14648e81116574cd17fb7d 160 SUPERFAMILY SSF54995 1 100 6.93E-20 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 UPA3_RS02955 09e7ad96fc14648e81116574cd17fb7d 160 Gene3D G3DSA:3.30.70.60 1 95 3.0E-20 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 UPA3_RS02955 09e7ad96fc14648e81116574cd17fb7d 160 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.1E-18 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 UPA3_RS02955 09e7ad96fc14648e81116574cd17fb7d 160 Pfam PF01250 Ribosomal protein S6 3 90 1.1E-15 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 3 100 4.4E-42 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 SUPERFAMILY SSF54999 5 100 2.49E-34 T 22-04-2016 IPR027486 Ribosomal protein S10 domain UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 PRINTS PR00971 Ribosomal protein S10 family signature 4 17 2.8E-19 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 PRINTS PR00971 Ribosomal protein S10 family signature 60 74 2.8E-19 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 PRINTS PR00971 Ribosomal protein S10 family signature 39 54 2.8E-19 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 SMART SM01403 6 100 7.9E-47 T 22-04-2016 IPR027486 Ribosomal protein S10 domain UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 Gene3D G3DSA:3.30.70.600 3 101 5.1E-38 T 22-04-2016 IPR027486 Ribosomal protein S10 domain UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 2 101 26.136 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 PANTHER PTHR11700 1 101 4.2E-36 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01200 41422808dcdb5644ddba279f64f59de0 101 Pfam PF00338 Ribosomal protein S10p/S20e 6 99 1.4E-32 T 22-04-2016 IPR027486 Ribosomal protein S10 domain UPA3_RS03215 2dfe555e2e7567f932d329b6ccd7168e 48 PANTHER PTHR14503 1 46 1.2E-25 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03215 2dfe555e2e7567f932d329b6ccd7168e 48 Pfam PF00468 Ribosomal protein L34 1 44 8.9E-25 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03215 2dfe555e2e7567f932d329b6ccd7168e 48 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.493 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03215 2dfe555e2e7567f932d329b6ccd7168e 48 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 1.0E-14 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03215 2dfe555e2e7567f932d329b6ccd7168e 48 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.8E-24 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03215 2dfe555e2e7567f932d329b6ccd7168e 48 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 22-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 SMART SM01374 1 122 9.7E-79 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 PANTHER PTHR11761 1 122 8.8E-64 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 SUPERFAMILY SSF50193 1 122 6.15E-49 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 22-04-2016 IPR019972 Ribosomal protein L14P, conserved site UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 9.5E-54 T 22-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 Gene3D G3DSA:2.40.150.20 1 122 3.6E-51 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 25.727 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 UPA3_RS01255 2e62b6cc554c5edb854b3d4f2179b4f3 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 4.7E-51 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 UPA3_RS01445 cb734cf92ba171b24d152225521f83b5 55 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 8 53 2.6E-13 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01445 cb734cf92ba171b24d152225521f83b5 55 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 54 14.419 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01445 cb734cf92ba171b24d152225521f83b5 55 Pfam PF01165 Ribosomal protein S21 8 51 2.2E-7 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 SUPERFAMILY SSF53335 8 156 1.15E-20 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 Pfam PF07669 Eco57I restriction-modification methylase 9 118 2.4E-10 T 22-04-2016 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 Gene3D G3DSA:3.40.50.150 7 132 4.0E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 PANTHER PTHR33841 11 120 8.3E-15 T 22-04-2016 UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 13 19 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 PANTHER PTHR33841:SF1 11 120 8.3E-15 T 22-04-2016 UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 44 68 2.3E-6 T 22-04-2016 UPA3_RS00190 e7c70d896c7a75f50c7d5e3280feeb24 277 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 10 22 2.3E-6 T 22-04-2016 UPA3_RS00460 6e82fb463ef7243e080604f93ad8379c 99 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 91 16.137 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family UPA3_RS00460 6e82fb463ef7243e080604f93ad8379c 99 SUPERFAMILY SSF82607 3 88 4.84E-18 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family UPA3_RS00460 6e82fb463ef7243e080604f93ad8379c 99 Gene3D G3DSA:3.30.1310.10 1 91 2.2E-17 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family UPA3_RS00460 6e82fb463ef7243e080604f93ad8379c 99 PIRSF PIRSF004555 1 99 2.5E-27 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family UPA3_RS00460 6e82fb463ef7243e080604f93ad8379c 99 Pfam PF02575 YbaB/EbfC DNA-binding family 8 91 8.3E-17 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family UPA3_RS00460 6e82fb463ef7243e080604f93ad8379c 99 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 97 1.6E-15 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 PANTHER PTHR11079:SF73 9 298 3.4E-78 T 22-04-2016 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 Pfam PF00849 RNA pseudouridylate synthase 87 236 8.4E-35 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 PANTHER PTHR11079 9 298 3.4E-78 T 22-04-2016 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 9 295 3.1E-80 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 SUPERFAMILY SSF55174 8 105 5.63E-13 T 22-04-2016 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 Gene3D G3DSA:3.10.290.10 10 62 1.9E-12 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 SMART SM00363 11 71 1.8E-7 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 UPA3_RS01650 3fe80fb760fe9b9c9ce67d6947b54c66 299 SUPERFAMILY SSF55120 72 296 1.92E-66 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 SUPERFAMILY SSF50104 9 122 3.51E-40 T 22-04-2016 IPR008991 Translation protein SH3-like domain UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 9 121 28.432 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 12 120 4.8E-44 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 Pfam PF01245 Ribosomal protein L19 11 119 2.7E-42 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 PANTHER PTHR15680 9 122 6.2E-39 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 PRINTS PR00061 Ribosomal protein L19 signature 95 120 1.5E-34 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 PRINTS PR00061 Ribosomal protein L19 signature 41 70 1.5E-34 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 PRINTS PR00061 Ribosomal protein L19 signature 11 40 1.5E-34 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 PIRSF PIRSF002191 1 123 1.1E-43 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS03020 134ea9784a49d661660ac92647524c7f 123 ProSitePatterns PS01015 Ribosomal protein L19 signature. 93 108 - T 22-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 Gene3D G3DSA:1.20.58.110 1 78 1.7E-18 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 77 7.1E-17 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 11 75 2.0E-30 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 SUPERFAMILY SSF46992 3 79 1.05E-20 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 Pfam PF01649 Ribosomal protein S20 2 76 1.6E-16 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 78 14.249 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 PANTHER PTHR33398 1 81 1.2E-14 T 22-04-2016 UPA3_RS01635 8a65af6ef039e1d1e11a57ddf0b133fa 84 PANTHER PTHR33398:SF1 1 81 1.2E-14 T 22-04-2016 UPA3_RS02440 636ad2c05d115dabb122241448c1e400 361 Pfam PF03193 Protein of unknown function, DUF258 89 216 9.8E-11 T 22-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 UPA3_RS02440 636ad2c05d115dabb122241448c1e400 361 Gene3D G3DSA:3.40.50.300 73 216 7.3E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS02440 636ad2c05d115dabb122241448c1e400 361 PANTHER PTHR11089 6 291 3.3E-36 T 22-04-2016 UPA3_RS02440 636ad2c05d115dabb122241448c1e400 361 PANTHER PTHR11089:SF3 6 291 3.3E-36 T 22-04-2016 UPA3_RS02440 636ad2c05d115dabb122241448c1e400 361 TIGRFAM TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH 6 360 3.9E-109 T 22-04-2016 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH UPA3_RS02440 636ad2c05d115dabb122241448c1e400 361 SUPERFAMILY SSF52540 73 276 3.31E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 179 13.397 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 PANTHER PTHR11910:SF1 11 171 4.3E-22 T 22-04-2016 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 SUPERFAMILY SSF47928 9 104 6.02E-10 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 PANTHER PTHR11910 11 171 4.3E-22 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 Gene3D G3DSA:1.10.520.20 9 95 2.1E-9 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.6E-11 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 PRINTS PR00125 ATP synthase delta subunit signature 138 153 1.6E-11 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 PRINTS PR00125 ATP synthase delta subunit signature 153 171 1.6E-11 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 10 175 2.8E-27 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00715 bd4b157a59989a77dc7267f934dc0c59 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 9 175 3.9E-34 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 SUPERFAMILY SSF52402 172 367 3.75E-41 T 22-04-2016 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 SUPERFAMILY SSF143437 4 170 5.1E-41 T 22-04-2016 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 Gene3D G3DSA:3.40.50.620 170 333 2.3E-42 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 390 122.724 T 22-04-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 Pfam PF02926 THUMP domain 59 154 5.4E-11 T 22-04-2016 IPR004114 THUMP domain GO:0003723 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 SMART SM00981 74 162 3.2E-19 T 22-04-2016 IPR004114 THUMP domain GO:0003723 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 6 375 8.0E-111 T 22-04-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 PANTHER PTHR14911:SF16 4 379 7.1E-105 T 22-04-2016 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 172 368 1.4E-62 T 22-04-2016 IPR020536 Thil, AANH domain GO:0004810 UniPathway: UPA00060 UPA3_RS02195 4760ece8243c5529d26caf370c15792b 390 PANTHER PTHR14911 4 379 7.1E-105 T 22-04-2016 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 SUPERFAMILY SSF75217 1 227 3.53E-85 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 PANTHER PTHR32125:SF1 110 224 1.1E-91 T 22-04-2016 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 PANTHER PTHR32125:SF1 1 94 1.1E-91 T 22-04-2016 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 Gene3D G3DSA:3.40.1280.10 1 157 2.4E-56 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 PIRSF PIRSF000386 1 228 1.2E-87 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 24 217 8.7E-59 T 22-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 Gene3D G3DSA:1.10.1270.20 159 224 5.3E-27 T 22-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 PANTHER PTHR32125 110 224 1.1E-91 T 22-04-2016 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 PANTHER PTHR32125 1 94 1.1E-91 T 22-04-2016 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 228 87.074 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 UPA3_RS03025 3fd9c8fd73f843c65de0b600f7534a25 228 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 227 1.5E-89 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 UPA3_RS00040 c58132e15fdd61a474b7a3f3a2d8a6e4 154 PIRSF PIRSF005384 3 152 8.0E-53 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 UPA3_RS00040 c58132e15fdd61a474b7a3f3a2d8a6e4 154 Gene3D G3DSA:3.40.1400.10 2 152 5.1E-50 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 UPA3_RS00040 c58132e15fdd61a474b7a3f3a2d8a6e4 154 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 5 151 3.4E-49 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 UPA3_RS00040 c58132e15fdd61a474b7a3f3a2d8a6e4 154 SUPERFAMILY SSF89623 2 149 5.36E-46 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 UPA3_RS00040 c58132e15fdd61a474b7a3f3a2d8a6e4 154 PANTHER PTHR30345 1 151 2.2E-48 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 UPA3_RS00040 c58132e15fdd61a474b7a3f3a2d8a6e4 154 Pfam PF02502 Ribose/Galactose Isomerase 5 144 1.3E-43 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 PANTHER PTHR17224:SF1 4 186 4.3E-63 T 22-04-2016 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 Gene3D G3DSA:3.40.50.1470 3 186 6.7E-65 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 16 29 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 Pfam PF01195 Peptidyl-tRNA hydrolase 5 185 1.4E-52 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 SUPERFAMILY SSF53178 4 186 3.79E-60 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 PANTHER PTHR17224 4 186 4.3E-63 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 186 5.0E-57 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 UPA3_RS00405 f49c30afd688caaefa5f7f5e0a276032 186 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 3 179 32.264 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 SUPERFAMILY SSF54111 1 99 3.53E-40 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 PANTHER PTHR33569 2 100 3.0E-37 T 22-04-2016 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 PANTHER PTHR33569:SF1 2 100 3.0E-37 T 22-04-2016 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 31.807 T 22-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 Pfam PF00547 Urease, gamma subunit 1 99 1.1E-41 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 2.2E-41 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 10 99 2.0E-37 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 PIRSF PIRSF001223 1 100 1.3E-47 T 22-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS02280 d4c1bee26cc79ea600110a2e09b83079 101 Gene3D G3DSA:3.30.280.10 1 99 1.7E-42 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 PANTHER PTHR10060 3 265 4.5E-80 T 22-04-2016 IPR001130 TatD family GO:0016788 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 Gene3D G3DSA:3.20.20.140 3 263 2.4E-73 T 22-04-2016 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 7 262 1.9E-71 T 22-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 198 214 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 7 15 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 Pfam PF01026 TatD related DNase 8 261 3.4E-69 T 22-04-2016 IPR001130 TatD family GO:0016788 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 PIRSF PIRSF005902 1 265 5.9E-72 T 22-04-2016 IPR001130 TatD family GO:0016788 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 130 140 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 SUPERFAMILY SSF51556 5 262 2.07E-70 T 22-04-2016 IPR032466 Metal-dependent hydrolase UPA3_RS00095 0f0eca39b24e68b9a515d191ebbb879e 265 PANTHER PTHR10060:SF20 3 265 4.5E-80 T 22-04-2016 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 Pfam PF00312 Ribosomal protein S15 10 88 9.1E-29 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 Gene3D G3DSA:1.10.287.10 3 88 2.4E-30 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 22 89 2.0E-32 T 22-04-2016 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 SMART SM01387 8 88 4.7E-37 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 PANTHER PTHR23321 1 88 3.0E-28 T 22-04-2016 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 88 6.9E-31 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 19.771 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 UPA3_RS01060 9e9d5afee89d48d12579ec11e0742d42 89 SUPERFAMILY SSF47060 4 88 3.53E-28 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 Pfam PF01668 SmpB protein 1 65 7.6E-22 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 ProSitePatterns PS01317 SsrA-binding protein. 20 32 - T 22-04-2016 IPR020081 SsrA-binding protein, conserved site UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 PANTHER PTHR30308 1 137 8.6E-59 T 22-04-2016 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 TIGRFAM TIGR00086 smpB: SsrA-binding protein 2 138 3.2E-51 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 Hamap MF_00023 SsrA-binding protein [smpB]. 1 141 55.642 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 Gene3D G3DSA:2.40.280.10 2 120 6.2E-43 T 22-04-2016 IPR023620 Small protein B UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 2 125 3.0E-68 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 PANTHER PTHR30308:SF2 1 137 8.6E-59 T 22-04-2016 UPA3_RS00300 86048fe7fb3a657f4dcce40194de455f 141 SUPERFAMILY SSF74982 2 125 3.14E-44 T 22-04-2016 IPR023620 Small protein B UPA3_RS02675 3679fe4270a1d663e5c2b0ff64e2bb56 77 SUPERFAMILY SSF47336 12 75 1.83E-12 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain UPA3_RS02675 3679fe4270a1d663e5c2b0ff64e2bb56 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 33 71 0.003 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 UPA3_RS02675 3679fe4270a1d663e5c2b0ff64e2bb56 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 31 46 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site UPA3_RS02675 3679fe4270a1d663e5c2b0ff64e2bb56 77 Gene3D G3DSA:1.10.1200.10 8 74 3.0E-14 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain UPA3_RS02675 3679fe4270a1d663e5c2b0ff64e2bb56 77 Pfam PF00550 Phosphopantetheine attachment site 11 71 4.7E-12 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 4 236 3.1E-57 T 22-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 Pfam PF01479 S4 domain 3 49 2.0E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 Pfam PF01728 FtsJ-like methyltransferase 59 228 1.9E-15 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 Gene3D G3DSA:3.10.290.10 3 88 9.2E-17 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 Gene3D G3DSA:3.40.50.150 89 216 3.4E-5 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 PANTHER PTHR32319 1 246 1.7E-70 T 22-04-2016 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 PANTHER PTHR32319:SF0 1 246 1.7E-70 T 22-04-2016 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 SUPERFAMILY SSF53335 53 216 6.89E-17 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 SMART SM00363 3 65 3.9E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 UPA3_RS02290 13d1350d7cb3675727249f79e4292af5 247 SUPERFAMILY SSF55174 3 99 4.45E-18 T 22-04-2016 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 PANTHER PTHR11649 5 438 5.9E-104 T 22-04-2016 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Gene3D G3DSA:1.20.120.430 246 269 7.1E-40 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Gene3D G3DSA:1.20.120.430 119 179 7.1E-40 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Gene3D G3DSA:1.20.120.430 376 438 7.1E-40 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Gene3D G3DSA:3.30.1360.120 2 118 1.9E-37 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Gene3D G3DSA:3.40.50.300 285 375 1.1E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Pfam PF01926 50S ribosome-binding GTPase 216 326 7.9E-25 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 8 438 1.7E-114 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 PANTHER PTHR11649:SF56 5 438 5.9E-104 T 22-04-2016 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 213 345 2.1E-25 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 2 438 28.751 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Gene3D G3DSA:3.40.50.300 214 245 4.1E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Pfam PF12631 MnmE helical domain 120 435 3.7E-35 T 22-04-2016 IPR025867 MnmE, helical domain UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 SUPERFAMILY SSF52540 71 160 1.81E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 SUPERFAMILY SSF52540 195 347 1.81E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00100 9eb6fc52831024999b4e6c3ed851a25c 438 Pfam PF10396 GTP-binding protein TrmE N-terminus 3 117 3.2E-33 T 22-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal UPA3_RS01215 fe0da67b84e0da48927f183a1a661b81 105 Pfam PF00276 Ribosomal protein L23 6 90 1.4E-18 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01215 fe0da67b84e0da48927f183a1a661b81 105 SUPERFAMILY SSF54189 1 93 4.32E-19 T 22-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01215 fe0da67b84e0da48927f183a1a661b81 105 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 4 97 13.246 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01215 fe0da67b84e0da48927f183a1a661b81 105 Gene3D G3DSA:3.30.70.330 2 95 4.4E-17 T 22-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 PANTHER PTHR24220 29 269 2.6E-79 T 22-04-2016 UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 SMART SM00382 54 243 7.6E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 PANTHER PTHR24220:SF438 29 269 2.6E-79 T 22-04-2016 UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 Pfam PF00005 ABC transporter 45 193 3.7E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 Gene3D G3DSA:3.40.50.300 22 269 1.9E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00360 3501a4b70de601a35589842b2912b478 291 SUPERFAMILY SSF52540 22 257 1.52E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 Hamap MF_01396 ATP synthase subunit c [atpH]. 41 108 15.719 T 22-04-2016 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 SUPERFAMILY SSF81333 40 107 2.75E-16 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 Pfam PF00137 ATP synthase subunit C 43 105 2.1E-13 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 Gene3D G3DSA:1.20.20.10 41 107 1.2E-18 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 PRINTS PR00124 ATP synthase C subunit signature 43 62 3.2E-16 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 PRINTS PR00124 ATP synthase C subunit signature 81 106 3.2E-16 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 PRINTS PR00124 ATP synthase C subunit signature 64 79 3.2E-16 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 UPA3_RS00725 abba82d7058f4834116cb1584b5ec605 109 ProSitePatterns PS00605 ATP synthase c subunit signature. 71 92 - T 22-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 SUPERFAMILY SSF50249 1 71 5.52E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 Pfam PF01176 Translation initiation factor 1A / IF-1 9 70 1.2E-23 T 22-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 24.991 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 SMART SM00316 4 72 4.2E-6 T 22-04-2016 IPR022967 RNA-binding domain, S1 UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 Gene3D G3DSA:2.40.50.140 1 71 3.2E-31 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 5 71 4.4E-32 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 UPA3_RS01315 c8a6615a3951a4741a7bcdb746d716b3 74 PANTHER PTHR33370 1 73 7.6E-30 T 22-04-2016 UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 PANTHER PTHR33434 1 564 1.2E-108 T 22-04-2016 UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 Pfam PF02734 DAK2 domain 34 198 4.7E-39 T 22-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 SUPERFAMILY SSF101473 2 200 6.54E-41 T 22-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 Pfam PF13684 Dihydroxyacetone kinase family 238 563 5.6E-81 T 22-04-2016 IPR033470 Uncharacterised protein, DhaK domain UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 SMART SM01120 34 199 2.9E-52 T 22-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 PANTHER PTHR33434:SF4 1 564 1.2E-108 T 22-04-2016 UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 9 564 1.4E-176 T 22-04-2016 IPR019986 DAK2 domain-containing protein YloV UPA3_RS01075 48d66fed08fcbcf996ad8d4d7146cd31 564 SMART SM01121 237 564 3.6E-118 T 22-04-2016 IPR033470 Uncharacterised protein, DhaK domain UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 PIRSF PIRSF036402 2 149 1.0E-43 T 22-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 PANTHER PTHR33620 64 144 1.1E-20 T 22-04-2016 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 Gene3D G3DSA:3.30.70.790 78 146 1.1E-20 T 22-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 Pfam PF02814 UreE urease accessory protein, N-terminal domain 18 71 5.2E-14 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 Pfam PF05194 UreE urease accessory protein, C-terminal domain 79 129 6.0E-9 T 22-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 Gene3D G3DSA:2.60.260.20 4 74 1.7E-17 T 22-04-2016 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 SUPERFAMILY SSF69287 3 75 8.89E-15 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 PANTHER PTHR33620:SF2 64 144 1.1E-20 T 22-04-2016 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 SUPERFAMILY SSF69737 79 143 2.22E-16 T 22-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 149 19.416 T 22-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 UPA3_RS02265 3924af8f1e7ed9f13f3e5bb46665d0f1 149 SMART SM00988 7 71 1.4E-12 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS00110 c0003d9cf5fd74eb39b89aaf2a4b4f23 230 SUPERFAMILY SSF52540 14 227 5.56E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00110 c0003d9cf5fd74eb39b89aaf2a4b4f23 230 Hamap MF_00165 Thymidylate kinase [tmk]. 17 224 24.958 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 UPA3_RS00110 c0003d9cf5fd74eb39b89aaf2a4b4f23 230 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 14 213 2.1E-47 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 UPA3_RS00110 c0003d9cf5fd74eb39b89aaf2a4b4f23 230 Gene3D G3DSA:3.40.50.300 15 225 2.1E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00110 c0003d9cf5fd74eb39b89aaf2a4b4f23 230 Pfam PF02223 Thymidylate kinase 21 212 6.7E-38 T 22-04-2016 UPA3_RS00110 c0003d9cf5fd74eb39b89aaf2a4b4f23 230 PANTHER PTHR10344 14 228 1.3E-34 T 22-04-2016 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 PANTHER PTHR13779:SF25 8 298 6.4E-75 T 22-04-2016 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 Gene3D G3DSA:3.40.50.300 7 166 9.2E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 SUPERFAMILY SSF46785 238 306 5.63E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 239 298 1.0E-27 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 Gene3D G3DSA:1.10.10.10 239 307 4.7E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 SMART SM00382 38 169 9.7E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 SUPERFAMILY SSF52540 6 218 2.7E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 PANTHER PTHR13779 8 298 6.4E-75 T 22-04-2016 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 11 306 2.3E-91 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 312 77.734 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 Gene3D G3DSA:1.10.8.60 171 221 5.4E-13 T 22-04-2016 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 235 306 1.5E-20 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 UPA3_RS02340 9e99b74b4e60d37eca5a020ddfee84cd 312 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 3 219 3.5E-67 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 117 123 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 1 325 3.6E-129 T 22-04-2016 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 PANTHER PTHR30408:SF4 2 323 4.8E-104 T 22-04-2016 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 Pfam PF02384 N-6 DNA Methylase 1 303 1.9E-99 T 22-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 PANTHER PTHR30408 2 323 4.8E-104 T 22-04-2016 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 SUPERFAMILY SSF53335 2 335 5.09E-95 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 11 27 5.84E-22 T 22-04-2016 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 114 126 5.84E-22 T 22-04-2016 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 151 175 5.84E-22 T 22-04-2016 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 45 59 5.84E-22 T 22-04-2016 UPA3_RS00515 a63dcd19ed46bf83ae6e5cecd4d930a5 337 Gene3D G3DSA:3.40.50.150 13 256 1.4E-36 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 Gene3D G3DSA:3.40.5.10 1 48 4.0E-19 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 SUPERFAMILY SSF55658 1 56 3.84E-15 T 22-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 43 6.7E-19 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 145 19.101 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 Pfam PF03948 Ribosomal protein L9, C-terminal domain 65 143 1.8E-13 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 Gene3D G3DSA:3.10.430.100 64 145 5.6E-14 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 5.0E-31 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 SUPERFAMILY SSF55653 57 142 6.93E-15 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal UPA3_RS02940 66414708c3bf5a20502ba3adb79c8d62 145 PANTHER PTHR21368 1 142 1.6E-25 T 22-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 PIRSF PIRSF004491 4 282 1.2E-61 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 Gene3D G3DSA:2.40.30.30 164 276 4.7E-27 T 22-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 PANTHER PTHR22749 1 273 7.2E-42 T 22-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 Pfam PF01687 Riboflavin kinase 161 276 3.5E-23 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 SUPERFAMILY SSF82114 149 280 4.14E-33 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 Gene3D G3DSA:3.40.50.620 21 160 4.7E-21 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 Pfam PF06574 FAD synthetase 22 148 9.0E-16 T 22-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 SMART SM00904 158 283 1.8E-33 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 22 273 2.0E-55 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 PANTHER PTHR22749:SF0 1 273 7.2E-42 T 22-04-2016 UPA3_RS01865 676cdfe0da4135367798dd918699d87d 283 SUPERFAMILY SSF52374 22 154 4.57E-16 T 22-04-2016 UPA3_RS01360 b923c77a51ef3e6b36427335a71ace41 195 Pfam PF01205 Uncharacterized protein family UPF0029 17 122 2.6E-28 T 22-04-2016 IPR001498 Impact, N-terminal UPA3_RS01360 b923c77a51ef3e6b36427335a71ace41 195 PANTHER PTHR16301:SF0 2 195 6.4E-43 T 22-04-2016 UPA3_RS01360 b923c77a51ef3e6b36427335a71ace41 195 PANTHER PTHR16301 2 195 6.4E-43 T 22-04-2016 IPR023582 Impact family UPA3_RS01360 b923c77a51ef3e6b36427335a71ace41 195 Gene3D G3DSA:3.30.230.30 4 128 3.0E-41 T 22-04-2016 IPR001498 Impact, N-terminal UPA3_RS01360 b923c77a51ef3e6b36427335a71ace41 195 SUPERFAMILY SSF54211 3 127 1.74E-39 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold UPA3_RS00935 9230aada5e140e9b7cbbd6e4e87bf9b1 126 SUPERFAMILY SSF55604 53 120 3.01E-10 T 22-04-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 UPA3_RS00935 9230aada5e140e9b7cbbd6e4e87bf9b1 126 Gene3D G3DSA:3.30.1360.60 54 121 1.9E-9 T 22-04-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 UPA3_RS02365 65a536e1721bf36edd2f85f68b1c6875 155 Pfam PF01592 NifU-like N terminal domain 14 152 2.6E-17 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 UPA3_RS02365 65a536e1721bf36edd2f85f68b1c6875 155 SUPERFAMILY SSF82649 4 150 2.33E-34 T 22-04-2016 UPA3_RS02365 65a536e1721bf36edd2f85f68b1c6875 155 Gene3D G3DSA:3.90.1010.10 13 152 1.0E-24 T 22-04-2016 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 SUPERFAMILY SSF54747 6 70 1.31E-19 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 ProSitePatterns PS00359 Ribosomal protein L11 signature. 125 140 - T 22-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 SMART SM00649 12 139 6.2E-59 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 PANTHER PTHR11661 6 146 2.2E-36 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 Pfam PF03946 Ribosomal protein L11, N-terminal domain 13 65 2.1E-18 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 Gene3D G3DSA:3.30.1550.10 5 70 1.4E-22 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 Gene3D G3DSA:1.10.10.250 71 139 9.7E-22 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 6 139 7.5E-49 T 22-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 Pfam PF00298 Ribosomal protein L11, RNA binding domain 70 138 6.8E-17 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 PANTHER PTHR11661:SF1 6 146 2.2E-36 T 22-04-2016 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 8 140 25.075 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 SUPERFAMILY SSF46906 67 139 2.75E-20 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 UPA3_RS02895 527aa6c198e78e70d2bdec87211b7dcd 150 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 37 71 5.0E-13 T 22-04-2016 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 PANTHER PTHR15238 7 52 2.6E-18 T 22-04-2016 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 PANTHER PTHR15238:SF3 7 52 2.6E-18 T 22-04-2016 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 53 8.1E-21 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 Pfam PF00471 Ribosomal protein L33 7 51 7.3E-21 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 ProSitePatterns PS00582 Ribosomal protein L33 signature. 19 38 - T 22-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 3 51 16.724 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02855 4e79c0d409751519124c9bf14d44291d 53 SUPERFAMILY SSF57829 6 51 5.31E-16 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 UPA3_RS00105 93a0e601525ade37897dc06432aafa6f 264 SUPERFAMILY SSF52540 57 155 3.63E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00105 93a0e601525ade37897dc06432aafa6f 264 Pfam PF13177 DNA polymerase III, delta subunit 39 138 5.8E-20 T 22-04-2016 UPA3_RS00105 93a0e601525ade37897dc06432aafa6f 264 Gene3D G3DSA:3.40.50.300 44 138 3.3E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 PANTHER PTHR13479 8 77 1.4E-23 T 22-04-2016 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 TIGRFAM TIGR00165 S18: ribosomal protein bS18 12 78 1.6E-27 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 SUPERFAMILY SSF46911 4 78 5.62E-27 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 8 79 21.068 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 Pfam PF01084 Ribosomal protein S18 24 74 4.4E-23 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 PRINTS PR00974 Ribosomal protein S18 family signature 52 66 2.2E-15 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 PRINTS PR00974 Ribosomal protein S18 family signature 66 76 2.2E-15 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 PRINTS PR00974 Ribosomal protein S18 family signature 44 51 2.2E-15 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 PRINTS PR00974 Ribosomal protein S18 family signature 34 44 2.2E-15 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 26 79 7.0E-25 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS02945 ba659bfab0c8569ca624e2dba836e1fc 79 Gene3D G3DSA:4.10.640.10 14 78 7.8E-29 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01815 0839aff554c5805ce513161be21f1904 291 Pfam PF02616 Segregation and condensation protein ScpA 28 254 1.4E-13 T 22-04-2016 IPR003768 Segregation and condensation protein A UPA3_RS01815 0839aff554c5805ce513161be21f1904 291 PANTHER PTHR33969 11 278 2.2E-20 T 22-04-2016 UPA3_RS01815 0839aff554c5805ce513161be21f1904 291 Hamap MF_01805 Segregation and condensation protein A [scpA]. 11 257 19.082 T 22-04-2016 IPR003768 Segregation and condensation protein A UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 521 36.188 T 22-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 Gene3D G3DSA:3.40.50.300 230 417 9.6E-96 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 Gene3D G3DSA:3.40.50.300 3 114 9.6E-96 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 89 99 - T 22-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 Pfam PF01268 Formate--tetrahydrofolate ligase 3 518 1.4E-170 T 22-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 PANTHER PTHR10025:SF40 3 517 5.6E-156 T 22-04-2016 UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 Gene3D G3DSA:3.10.410.10 422 506 9.8E-22 T 22-04-2016 UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 PANTHER PTHR10025 3 517 5.6E-156 T 22-04-2016 UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 SUPERFAMILY SSF52540 3 518 1.29E-167 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01150 95554c84b10f5fa38bc8255937f3592f 521 Gene3D G3DSA:3.30.1510.10 115 228 1.6E-34 T 22-04-2016 UPA3_RS01105 41b89912f33dbdcdcb2aad6b7e65a98c 100 PANTHER PTHR21349 1 97 6.0E-35 T 22-04-2016 UPA3_RS01105 41b89912f33dbdcdcb2aad6b7e65a98c 100 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 97 2.4E-36 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 UPA3_RS01105 41b89912f33dbdcdcb2aad6b7e65a98c 100 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 99 25.322 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01105 41b89912f33dbdcdcb2aad6b7e65a98c 100 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 98 5.7E-35 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01105 41b89912f33dbdcdcb2aad6b7e65a98c 100 SUPERFAMILY SSF141091 1 98 1.44E-34 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 UPA3_RS01105 41b89912f33dbdcdcb2aad6b7e65a98c 100 ProSitePatterns PS01169 Ribosomal protein L21 signature. 68 90 - T 22-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Pfam PF06421 GTP-binding protein LepA C-terminus 491 597 2.4E-48 T 22-04-2016 IPR013842 GTP-binding protein LepA, C-terminal UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PANTHER PTHR23115:SF175 400 599 1.3E-267 T 22-04-2016 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PANTHER PTHR23115:SF175 1 376 1.3E-267 T 22-04-2016 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 183 8.0E-54 T 22-04-2016 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Gene3D G3DSA:3.30.70.240 404 493 4.0E-20 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 SUPERFAMILY SSF50447 167 291 1.34E-29 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 176 1.4E-17 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Pfam PF03144 Elongation factor Tu domain 2 208 278 4.9E-12 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PANTHER PTHR23115 400 599 1.3E-267 T 22-04-2016 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PANTHER PTHR23115 1 376 1.3E-267 T 22-04-2016 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Gene3D G3DSA:3.40.50.300 3 197 1.7E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 SMART SM00838 401 489 0.0011 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 TIGRFAM TIGR01393 lepA: elongation factor 4 5 598 0.0 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 283.609 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 SUPERFAMILY SSF52540 1 208 1.84E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 SUPERFAMILY SSF54980 402 497 1.63E-23 T 22-04-2016 IPR009022 Elongation factor G, III-V domain UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Pfam PF00679 Elongation factor G C-terminus 402 486 3.1E-21 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Gene3D G3DSA:3.30.70.870 296 372 3.1E-23 T 22-04-2016 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 SUPERFAMILY SSF54980 296 373 2.09E-16 T 22-04-2016 IPR009022 Elongation factor G, III-V domain UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PRINTS PR00315 GTP-binding elongation factor signature 128 137 2.1E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PRINTS PR00315 GTP-binding elongation factor signature 8 21 2.1E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PRINTS PR00315 GTP-binding elongation factor signature 92 103 2.1E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.1E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 PRINTS PR00315 GTP-binding elongation factor signature 76 86 2.1E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 UPA3_RS01705 efba3de470c87a405a530d1dbd673c59 599 Gene3D G3DSA:2.40.30.10 198 292 2.8E-24 T 22-04-2016 UPA3_RS01295 098c8bbdc49d02b044f81e6b4bce33b3 148 Gene3D G3DSA:3.100.10.10 33 146 3.2E-21 T 22-04-2016 UPA3_RS01295 098c8bbdc49d02b044f81e6b4bce33b3 148 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 144 3.4E-42 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 UPA3_RS01295 098c8bbdc49d02b044f81e6b4bce33b3 148 PANTHER PTHR12934 1 137 7.3E-39 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 UPA3_RS01295 098c8bbdc49d02b044f81e6b4bce33b3 148 SUPERFAMILY SSF52080 12 139 1.96E-34 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P UPA3_RS01295 098c8bbdc49d02b044f81e6b4bce33b3 148 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 141 4.1E-25 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P UPA3_RS01295 098c8bbdc49d02b044f81e6b4bce33b3 148 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 147 16.818 T 22-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 Gene3D G3DSA:3.40.1380.10 70 185 9.9E-23 T 22-04-2016 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 286 24.165 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 Pfam PF00231 ATP synthase 3 284 1.6E-67 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 3.8E-23 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 PRINTS PR00126 ATP synthase gamma subunit signature 160 177 3.8E-23 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 3.8E-23 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 PRINTS PR00126 ATP synthase gamma subunit signature 71 90 3.8E-23 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 SUPERFAMILY SSF52943 1 284 7.85E-69 T 22-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 Gene3D G3DSA:1.10.287.80 236 282 3.9E-22 T 22-04-2016 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 2 284 2.9E-68 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 Gene3D G3DSA:1.10.287.80 18 59 6.0E-20 T 22-04-2016 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 Gene3D G3DSA:1.10.287.80 202 235 6.0E-20 T 22-04-2016 UPA3_RS00695 8c50bb71c02373d5a07ca338e4bd0993 286 PANTHER PTHR11693 2 286 1.4E-57 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00020 17dbc090192fce23910a07d4469078fb 95 SUPERFAMILY SSF143800 2 67 4.71E-13 T 22-04-2016 UPA3_RS00020 17dbc090192fce23910a07d4469078fb 95 Pfam PF01197 Ribosomal protein L31 3 67 3.6E-17 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00020 17dbc090192fce23910a07d4469078fb 95 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 58 - T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00020 17dbc090192fce23910a07d4469078fb 95 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 70 25.511 T 22-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00020 17dbc090192fce23910a07d4469078fb 95 TIGRFAM TIGR00105 L31: ribosomal protein bL31 2 68 3.8E-18 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00925 f0967a88c83258b88b7d3528daa4db81 128 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 123 1.1E-43 T 22-04-2016 IPR006504 Transcriptional regulator Spx/MgsR UPA3_RS00925 f0967a88c83258b88b7d3528daa4db81 128 SUPERFAMILY SSF52833 1 121 8.3E-19 T 22-04-2016 IPR012336 Thioredoxin-like fold UPA3_RS00925 f0967a88c83258b88b7d3528daa4db81 128 Pfam PF03960 ArsC family 6 121 1.1E-18 T 22-04-2016 IPR006660 Arsenate reductase-like UPA3_RS00925 f0967a88c83258b88b7d3528daa4db81 128 Gene3D G3DSA:3.40.30.10 1 121 8.9E-15 T 22-04-2016 IPR012336 Thioredoxin-like fold UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 Pfam PF01926 50S ribosome-binding GTPase 21 136 5.6E-20 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 SUPERFAMILY SSF52540 9 196 1.71E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 2 179 2.0E-59 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 PANTHER PTHR11649 4 185 4.2E-43 T 22-04-2016 UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 18 182 6.1E-15 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 7 185 25.893 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 UPA3_RS01380 8c0818ecb1b5504ffdff4646aa8646e5 208 Gene3D G3DSA:3.40.50.300 13 184 3.9E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 PANTHER PTHR18804 1 37 1.3E-15 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.6E-22 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 1.0E-8 T 22-04-2016 UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.265 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 Pfam PF00444 Ribosomal protein L36 1 37 3.3E-18 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 SUPERFAMILY SSF57840 1 37 6.28E-16 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01320 d28a9c087bfea917966c78080d770074 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01000 495035146bd966b30dc354ea8f261725 197 Gene3D G3DSA:2.40.50.140 84 194 1.3E-34 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS01000 495035146bd966b30dc354ea8f261725 197 Pfam PF01588 Putative tRNA binding domain 89 188 1.3E-15 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 UPA3_RS01000 495035146bd966b30dc354ea8f261725 197 Gene3D G3DSA:3.30.1940.10 37 77 1.8E-4 T 22-04-2016 IPR027855 Domain of unknown function DUF4479 UPA3_RS01000 495035146bd966b30dc354ea8f261725 197 SUPERFAMILY SSF50249 85 191 3.43E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold UPA3_RS01000 495035146bd966b30dc354ea8f261725 197 PANTHER PTHR10947 82 188 1.1E-18 T 22-04-2016 UPA3_RS01000 495035146bd966b30dc354ea8f261725 197 PANTHER PTHR10947:SF0 82 188 1.1E-18 T 22-04-2016 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 3 62 14.336 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 Gene3D G3DSA:1.10.287.310 5 66 2.7E-17 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 SUPERFAMILY SSF46561 5 65 1.26E-15 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 PANTHER PTHR10916 5 75 9.4E-12 T 22-04-2016 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 ProSitePatterns PS00579 Ribosomal protein L29 signature. 41 55 - T 22-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 PANTHER PTHR10916:SF0 5 75 9.4E-12 T 22-04-2016 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 TIGRFAM TIGR00012 L29: ribosomal protein uL29 7 62 6.9E-15 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01245 a9d5b64f250cc5d0daea5f598b680b0d 75 Pfam PF00831 Ribosomal L29 protein 6 62 2.2E-15 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00060 1637497bdbaf949a27840b3c816cf6b6 166 Pfam PF00466 Ribosomal protein L10 11 104 2.3E-19 T 22-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 UPA3_RS00060 1637497bdbaf949a27840b3c816cf6b6 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 6 164 23.639 T 22-04-2016 IPR022973 Ribosomal protein L10 UPA3_RS00060 1637497bdbaf949a27840b3c816cf6b6 166 SUPERFAMILY SSF160369 10 163 6.8E-41 T 22-04-2016 UPA3_RS00060 1637497bdbaf949a27840b3c816cf6b6 166 PANTHER PTHR11560 11 164 1.9E-38 T 22-04-2016 UPA3_RS00060 1637497bdbaf949a27840b3c816cf6b6 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 11 45 - T 22-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 PRINTS PR00064 Ribosomal protein L35 signature 38 56 5.7E-16 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 PRINTS PR00064 Ribosomal protein L35 signature 23 37 5.7E-16 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 PRINTS PR00064 Ribosomal protein L35 signature 5 22 5.7E-16 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 SUPERFAMILY SSF143034 5 64 8.76E-18 T 22-04-2016 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 Pfam PF01632 Ribosomal protein L35 6 64 4.1E-19 T 22-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 7 33 - T 22-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 3 62 13.816 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 PANTHER PTHR33343 1 64 9.7E-15 T 22-04-2016 UPA3_RS01190 2c6112c937e09ff084d377167275f808 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 7 64 1.7E-20 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 140 5.1E-35 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 145 33.621 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 PANTHER PTHR34701 2 140 9.4E-25 T 22-04-2016 UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 SUPERFAMILY SSF89447 1 138 1.69E-34 T 22-04-2016 UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 140 3.0E-67 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 Pfam PF02381 MraZ protein, putative antitoxin-like 1 72 3.6E-6 T 22-04-2016 IPR020603 MraZ domain UPA3_RS02020 32b24abd7c28ad5497ebc5810ab6777d 145 Pfam PF02381 MraZ protein, putative antitoxin-like 74 139 3.7E-12 T 22-04-2016 IPR020603 MraZ domain UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 PANTHER PTHR22881 45 147 2.7E-41 T 22-04-2016 UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 42 143 1.0E-37 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 22-04-2016 IPR020549 Endoribonuclease YbeY, conserved site UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 Pfam PF02130 Uncharacterized protein family UPF0054 20 143 1.7E-40 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 SUPERFAMILY SSF55486 10 144 4.58E-40 T 22-04-2016 UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 Gene3D G3DSA:3.40.390.30 13 149 8.7E-44 T 22-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 UPA3_RS02540 6f7d29d3f750eb2c958cc93468164e2a 155 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 6 147 21.469 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 SUPERFAMILY SSF53271 2 205 1.31E-68 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 1 207 44.688 T 22-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 Pfam PF14681 Uracil phosphoribosyltransferase 5 206 2.8E-70 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 Gene3D G3DSA:3.40.50.2020 4 207 1.6E-77 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 PANTHER PTHR10285 1 196 9.0E-83 T 22-04-2016 UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 PANTHER PTHR10285:SF46 1 196 9.0E-83 T 22-04-2016 UPA3_RS00625 d21432270e9d782a14c0a824285ae240 207 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 2 207 7.0E-90 T 22-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 UPA3_RS00685 5dc40439f496b8b7880540b377fbe853 136 Gene3D G3DSA:2.60.15.10 6 90 3.2E-14 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00685 5dc40439f496b8b7880540b377fbe853 136 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 132 15.126 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00685 5dc40439f496b8b7880540b377fbe853 136 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 83 1.2E-13 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00685 5dc40439f496b8b7880540b377fbe853 136 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 91 7.0E-5 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00685 5dc40439f496b8b7880540b377fbe853 136 SUPERFAMILY SSF51344 6 85 1.7E-14 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS00685 5dc40439f496b8b7880540b377fbe853 136 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 133 6.2E-40 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.3E-95 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 PIRSF PIRSF002155 1 227 1.5E-76 T 22-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 Gene3D G3DSA:3.40.50.790 69 159 1.9E-31 T 22-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 Pfam PF00687 Ribosomal protein L1p/L10e family 35 220 1.4E-44 T 22-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 37.063 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 PANTHER PTHR23105 21 228 1.4E-59 T 22-04-2016 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 ProSitePatterns PS01199 Ribosomal protein L1 signature. 120 139 - T 22-04-2016 IPR023673 Ribosomal protein L1, conserved site UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 SUPERFAMILY SSF56808 6 224 6.67E-69 T 22-04-2016 IPR023674 Ribosomal protein L1-like UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 Gene3D G3DSA:3.30.190.20 161 225 6.4E-40 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 Gene3D G3DSA:3.30.190.20 17 68 6.4E-40 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 UPA3_RS02890 f400fd6cccec882aa3214c5ee0845822 229 PANTHER PTHR23105:SF5 21 228 1.4E-59 T 22-04-2016 UPA3_RS01375 e23ed19d391a8ed9a4853c64b1fffc46 109 ProDom PD048972 UPF0154 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED FAMILY YNEF SUPERFAMILY MG335.1 EXPORTED MYCGA5700 48 99 1.0E-23 T 22-04-2016 IPR005359 Protein with unknown function UPF0154 UPA3_RS01375 e23ed19d391a8ed9a4853c64b1fffc46 109 Hamap MF_00363 UPF0154 protein . 41 109 20.005 T 22-04-2016 IPR005359 Protein with unknown function UPF0154 UPA3_RS01375 e23ed19d391a8ed9a4853c64b1fffc46 109 Pfam PF03672 Uncharacterised protein family (UPF0154) 48 104 1.3E-24 T 22-04-2016 IPR005359 Protein with unknown function UPF0154 UPA3_RS01800 82b475fa51afafc767ee13b88fc73df0 224 Pfam PF02224 Cytidylate kinase 7 214 3.1E-62 T 22-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 UPA3_RS01800 82b475fa51afafc767ee13b88fc73df0 224 PANTHER PTHR21299 7 206 1.3E-42 T 22-04-2016 UPA3_RS01800 82b475fa51afafc767ee13b88fc73df0 224 SUPERFAMILY SSF52540 5 215 4.52E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01800 82b475fa51afafc767ee13b88fc73df0 224 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 211 2.4E-63 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 UPA3_RS01800 82b475fa51afafc767ee13b88fc73df0 224 Gene3D G3DSA:3.40.50.300 3 215 2.9E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01800 82b475fa51afafc767ee13b88fc73df0 224 Hamap MF_00238 Cytidylate kinase [cmk]. 5 219 28.328 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 87 5.0E-39 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 PANTHER PTHR33992 7 108 1.5E-13 T 22-04-2016 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 110 12.977 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 Pfam PF00825 Ribonuclease P 3 107 1.0E-21 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 22-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 6 108 3.5E-19 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 SUPERFAMILY SSF54211 2 108 1.59E-21 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold UPA3_RS03210 cd69982e3371440b5688026fbe3951f8 113 Gene3D G3DSA:3.30.230.10 6 109 1.8E-21 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup UPA3_RS03070 638aa3579e05ba8655ad30a37b265650 133 Pfam PF00380 Ribosomal protein S9/S16 13 133 2.3E-44 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 UPA3_RS03070 638aa3579e05ba8655ad30a37b265650 133 ProSitePatterns PS00360 Ribosomal protein S9 signature. 72 90 - T 22-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 UPA3_RS03070 638aa3579e05ba8655ad30a37b265650 133 SUPERFAMILY SSF54211 10 133 5.31E-44 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold UPA3_RS03070 638aa3579e05ba8655ad30a37b265650 133 PANTHER PTHR21569 9 133 1.1E-53 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 UPA3_RS03070 638aa3579e05ba8655ad30a37b265650 133 Gene3D G3DSA:3.30.230.10 9 133 3.3E-46 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup UPA3_RS03070 638aa3579e05ba8655ad30a37b265650 133 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 4 133 33.652 T 22-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid UPA3_RS01755 6a0937f7e2a46bfe60dcf907b1e2e355 57 Pfam PF01783 Ribosomal L32p protein family 2 53 3.1E-20 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 UPA3_RS01755 6a0937f7e2a46bfe60dcf907b1e2e355 57 SUPERFAMILY SSF57829 1 52 7.32E-18 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 UPA3_RS01755 6a0937f7e2a46bfe60dcf907b1e2e355 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 53 5.1E-23 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 UPA3_RS01755 6a0937f7e2a46bfe60dcf907b1e2e355 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 18.4 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 UPA3_RS02915 157da448b653e48039d75fec505f2a22 94 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 16 87 2.7E-5 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 UPA3_RS02915 157da448b653e48039d75fec505f2a22 94 SUPERFAMILY SSF141000 5 87 1.11E-6 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 160 27.336 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 Pfam PF00588 SpoU rRNA Methylase family 2 151 7.4E-32 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 PANTHER PTHR12029:SF31 1 162 4.3E-40 T 22-04-2016 UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 Gene3D G3DSA:3.40.1280.10 1 166 4.8E-46 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 PIRSF PIRSF029256 1 163 2.8E-47 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 PANTHER PTHR12029 1 162 4.3E-40 T 22-04-2016 UPA3_RS01390 6daa8fb35ba1cc8e23aa0d1092411841 172 SUPERFAMILY SSF75217 2 168 2.94E-32 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 SUPERFAMILY SSF52540 11 215 8.15E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Pfam PF16193 AAA C-terminal domain 170 240 1.5E-13 T 22-04-2016 IPR032423 AAA ATPase, C-terminal domain UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Gene3D G3DSA:1.20.272.10 224 319 1.1E-30 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Gene3D G3DSA:3.40.50.300 11 139 6.9E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 PANTHER PTHR13779:SF7 12 408 5.3E-106 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 PANTHER PTHR13779 12 408 5.3E-106 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 377 395 4.9E-5 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 47 66 4.9E-5 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 11 124 4.5E-16 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Gene3D G3DSA:1.10.8.60 140 207 2.5E-9 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 SUPERFAMILY SSF48019 226 406 3.06E-58 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 SMART SM00382 39 151 2.2E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Gene3D G3DSA:1.10.3710.10 321 406 1.5E-22 T 22-04-2016 UPA3_RS01020 53518380aa51a0ae2ce3963bfdca72b5 408 Pfam PF12002 MgsA AAA+ ATPase C terminal 241 404 2.5E-55 T 22-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 36.363 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 204 2.9E-76 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 Gene3D G3DSA:4.10.960.10 87 157 1.9E-20 T 22-04-2016 UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 PANTHER PTHR11229 1 210 1.5E-85 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 ProSitePatterns PS00474 Ribosomal protein L3 signature. 98 121 - T 22-04-2016 IPR019926 Ribosomal protein L3, conserved site UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 Pfam PF00297 Ribosomal protein L3 94 182 1.9E-9 T 22-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 SUPERFAMILY SSF50447 2 211 1.85E-69 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 Gene3D G3DSA:2.40.30.10 3 40 1.4E-8 T 22-04-2016 UPA3_RS01205 366a1842e7e2b4fd9559aab16212d569 233 Gene3D G3DSA:2.40.30.10 158 209 1.4E-8 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 PIRSF PIRSF001123 6 363 1.2E-105 T 22-04-2016 IPR008007 Peptidase M42 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 Gene3D G3DSA:3.40.630.10 7 76 2.7E-69 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 Gene3D G3DSA:3.40.630.10 174 361 2.7E-69 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 SUPERFAMILY SSF101821 75 185 1.19E-24 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 PANTHER PTHR32481 4 363 5.4E-102 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 SUPERFAMILY SSF53187 177 357 2.41E-53 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 SUPERFAMILY SSF53187 10 85 2.41E-53 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 Gene3D G3DSA:2.40.30.40 77 166 7.8E-25 T 22-04-2016 IPR023367 Peptidase M42, domain 2 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 PANTHER PTHR32481:SF0 4 363 5.4E-102 T 22-04-2016 UPA3_RS01460 38ee7e2c4247905f8c6aabd5608bceee 363 Pfam PF05343 M42 glutamyl aminopeptidase 50 344 6.6E-97 T 22-04-2016 IPR008007 Peptidase M42 UPA3_RS02130 1cc3739bdd518632e128a3134d757d1e 218 Gene3D G3DSA:2.30.22.10 163 218 2.9E-10 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 UPA3_RS02130 1cc3739bdd518632e128a3134d757d1e 218 SUPERFAMILY SSF51064 165 218 1.44E-9 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 UPA3_RS02130 1cc3739bdd518632e128a3134d757d1e 218 Hamap MF_01151 Protein GrpE [grpE]. 21 218 11.304 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 UPA3_RS02130 1cc3739bdd518632e128a3134d757d1e 218 Pfam PF01025 GrpE 57 218 5.5E-27 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 22-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 104 2.5E-29 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 99 18.402 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 SMART SM00739 3 30 1.1E-6 T 22-04-2016 IPR005824 KOW UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 Pfam PF00467 KOW motif 6 37 7.1E-8 T 22-04-2016 IPR005824 KOW UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 104 2.7E-21 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 PANTHER PTHR12903 3 106 7.4E-30 T 22-04-2016 UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 SUPERFAMILY SSF50104 3 102 2.63E-27 T 22-04-2016 IPR008991 Translation protein SH3-like domain UPA3_RS01260 896ddee55bf86af351d6a914358a9e59 110 Gene3D G3DSA:2.30.30.30 3 94 2.1E-18 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 120 3.4E-39 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 121 20.736 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 120 5.0E-27 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 Gene3D G3DSA:1.20.5.710 3 51 1.8E-21 T 22-04-2016 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 Gene3D G3DSA:3.30.1390.10 52 120 1.2E-23 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 SUPERFAMILY SSF48300 4 51 3.27E-14 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 SUPERFAMILY SSF54736 52 120 2.44E-18 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 120 6.7E-22 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 UPA3_RS00065 098fdee1bb231bf865286496741d2ff6 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 3.1E-19 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 SUPERFAMILY SSF51735 118 266 9.65E-15 T 22-04-2016 IPR016040 NAD(P)-binding domain UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 PANTHER PTHR10025 89 266 3.1E-13 T 22-04-2016 UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 PANTHER PTHR10025:SF5 89 266 3.1E-13 T 22-04-2016 UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 248 266 1.366971E-9 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 146 166 1.366971E-9 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 195 224 1.366971E-9 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 Gene3D G3DSA:3.40.50.720 128 256 2.4E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain UPA3_RS01775 ab997608c4967d36cd2413dd58cc9ac7 269 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 126 268 5.6E-26 T 22-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 PANTHER PTHR13832:SF278 1 241 2.1E-32 T 22-04-2016 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 SMART SM00332 1 245 4.4E-6 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 SUPERFAMILY SSF81606 1 244 3.4E-43 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 PANTHER PTHR13832 1 241 2.1E-32 T 22-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 Gene3D G3DSA:3.60.40.10 1 243 5.5E-43 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 Pfam PF13672 Protein phosphatase 2C 12 217 2.3E-9 T 22-04-2016 UPA3_RS01120 20c79ef7bfabe59bf79301183229558b 247 SMART SM00331 7 247 1.7E-4 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 UPA3_RS02400 8a5ed024897ce9cc5ce2bb20a55110fa 255 Gene3D G3DSA:3.40.50.620 18 236 2.5E-46 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold UPA3_RS02400 8a5ed024897ce9cc5ce2bb20a55110fa 255 TIGRFAM TIGR00552 nadE: NAD+ synthetase 6 236 3.1E-39 T 22-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 UPA3_RS02400 8a5ed024897ce9cc5ce2bb20a55110fa 255 SUPERFAMILY SSF52402 11 238 8.38E-51 T 22-04-2016 UPA3_RS02400 8a5ed024897ce9cc5ce2bb20a55110fa 255 PANTHER PTHR23090 19 235 1.2E-31 T 22-04-2016 UPA3_RS02400 8a5ed024897ce9cc5ce2bb20a55110fa 255 Pfam PF02540 NAD synthase 18 235 3.5E-36 T 22-04-2016 IPR022310 NAD/GMP synthase UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 Gene3D G3DSA:3.30.1340.10 1 81 2.9E-23 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.5E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.5E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.5E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 2.3E-21 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 Pfam PF00381 PTS HPr component phosphorylation site 3 81 4.2E-19 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 PANTHER PTHR33705 1 86 2.3E-19 T 22-04-2016 UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 SUPERFAMILY SSF55594 1 81 5.36E-19 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like UPA3_RS03125 453cc491f882c2d70f0befdeb2de86ca 87 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 22-04-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 SUPERFAMILY SSF50486 205 303 3.14E-21 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 PANTHER PTHR11138 3 299 3.2E-76 T 22-04-2016 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 301 5.0E-75 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 Pfam PF02911 Formyl transferase, C-terminal domain 204 300 4.2E-18 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 SUPERFAMILY SSF53328 1 202 2.09E-50 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 3 303 26.257 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 Pfam PF00551 Formyl transferase 4 169 1.2E-28 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 Gene3D G3DSA:3.10.25.10 207 301 1.8E-17 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02415 7c6de2e3b3c47b72652517b106b963ce 305 Gene3D G3DSA:3.40.50.170 2 205 1.1E-51 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 UPA3_RS02225 8fd210e3fefb9f7a14c98114bc5d6bb8 254 SUPERFAMILY SSF116965 1 252 1.83E-78 T 22-04-2016 UPA3_RS02225 8fd210e3fefb9f7a14c98114bc5d6bb8 254 Gene3D G3DSA:1.10.472.40 172 250 8.5E-7 T 22-04-2016 IPR023344 Uncharacterised domain MG237, C-terminal UPA3_RS02225 8fd210e3fefb9f7a14c98114bc5d6bb8 254 Pfam PF11428 Protein of unknown function (DUF3196) 4 251 3.7E-96 T 22-04-2016 IPR024503 Protein of unknown function DUF3196 UPA3_RS01415 2ba2918b8647ee272448115095505151 152 Gene3D G3DSA:3.30.428.10 1 110 3.0E-32 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 UPA3_RS01415 2ba2918b8647ee272448115095505151 152 PANTHER PTHR23089 3 109 4.2E-30 T 22-04-2016 IPR001310 Histidine triad (HIT) protein UPA3_RS01415 2ba2918b8647ee272448115095505151 152 PANTHER PTHR23089:SF7 3 109 4.2E-30 T 22-04-2016 UPA3_RS01415 2ba2918b8647ee272448115095505151 152 PRINTS PR00332 Histidine triad family signature 94 104 9.0E-14 T 22-04-2016 IPR001310 Histidine triad (HIT) protein UPA3_RS01415 2ba2918b8647ee272448115095505151 152 PRINTS PR00332 Histidine triad family signature 26 44 9.0E-14 T 22-04-2016 IPR001310 Histidine triad (HIT) protein UPA3_RS01415 2ba2918b8647ee272448115095505151 152 PRINTS PR00332 Histidine triad family signature 5 21 9.0E-14 T 22-04-2016 IPR001310 Histidine triad (HIT) protein UPA3_RS01415 2ba2918b8647ee272448115095505151 152 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 22-04-2016 IPR019808 Histidine triad, conserved site UPA3_RS01415 2ba2918b8647ee272448115095505151 152 Pfam PF01230 HIT domain 12 108 3.7E-19 T 22-04-2016 IPR001310 Histidine triad (HIT) protein UPA3_RS01415 2ba2918b8647ee272448115095505151 152 SUPERFAMILY SSF54197 1 113 8.04E-32 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 UPA3_RS02550 9fea36cd098768ef22bf5bc91c83b2ac 238 Pfam PF02565 Recombination protein O C terminal 86 229 8.2E-7 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 UPA3_RS02550 9fea36cd098768ef22bf5bc91c83b2ac 238 TIGRFAM TIGR00613 reco: DNA repair protein RecO 6 231 3.9E-16 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 UPA3_RS02550 9fea36cd098768ef22bf5bc91c83b2ac 238 SUPERFAMILY SSF57863 105 224 1.54E-8 T 22-04-2016 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 PANTHER PTHR11076 1 357 2.8E-91 T 22-04-2016 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 SUPERFAMILY SSF100879 248 356 5.69E-19 T 22-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 Hamap MF_01113 DNA polymerase IV [dinB]. 6 358 31.115 T 22-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 Gene3D G3DSA:3.30.70.270 71 169 5.1E-28 T 22-04-2016 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 Gene3D G3DSA:3.30.1490.100 248 352 2.6E-20 T 22-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 SUPERFAMILY SSF56672 3 235 9.78E-66 T 22-04-2016 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 Pfam PF11799 impB/mucB/samB family C-terminal domain 247 354 1.9E-15 T 22-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS02295 492c9c036801985e68e4c38a2a3e3918 360 Pfam PF00817 impB/mucB/samB family 12 160 3.2E-45 T 22-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 UPA3_RS02305 f8d5baf8bb03d0b9860833de239eec43 83 Gene3D G3DSA:2.60.260.20 1 76 1.9E-5 T 22-04-2016 UPA3_RS02305 f8d5baf8bb03d0b9860833de239eec43 83 SMART SM00988 10 75 7.7E-8 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS02305 f8d5baf8bb03d0b9860833de239eec43 83 SUPERFAMILY SSF69287 1 77 3.01E-6 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 Gene3D G3DSA:3.30.1370.10 168 223 3.6E-4 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 Hamap MF_00335 Ribonuclease Y [rny]. 6 470 17.498 T 22-04-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 Gene3D G3DSA:1.10.3210.10 272 441 3.0E-33 T 22-04-2016 IPR006674 HD domain UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 SMART SM00471 281 387 4.8E-10 T 22-04-2016 IPR003607 HD/PDEase domain UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 TIGRFAM TIGR00277 HDIG: HDIG domain 281 358 1.1E-19 T 22-04-2016 IPR006675 HDIG domain UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 Pfam PF01966 HD domain 286 377 9.6E-17 T 22-04-2016 IPR006674 HD domain UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 SUPERFAMILY SSF109604 264 404 1.3E-27 T 22-04-2016 UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 SUPERFAMILY SSF54791 164 227 1.17E-6 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 UPA3_RS00440 a5b48f3042b4600528c12e293211b979 473 PANTHER PTHR12826 170 470 3.8E-57 T 22-04-2016 UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 Gene3D G3DSA:3.30.1330.30 5 106 3.2E-18 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 Gene3D G3DSA:3.40.1280.10 109 255 5.6E-41 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 Pfam PF00588 SpoU rRNA Methylase family 115 253 8.4E-36 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 SMART SM00967 33 108 3.8E-4 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 SUPERFAMILY SSF55315 3 105 1.77E-18 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 PANTHER PTHR12029 2 255 6.8E-52 T 22-04-2016 UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 SUPERFAMILY SSF75217 110 255 1.24E-38 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases UPA3_RS01720 dcb907d59f6fae2badf92eb3ec8ab0f5 257 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 33 107 6.4E-12 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PANTHER PTHR11817 1 16 4.3E-109 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PANTHER PTHR11817 37 374 4.3E-109 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 SUPERFAMILY SSF51621 181 362 1.5E-70 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 SUPERFAMILY SSF51621 4 95 1.5E-70 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 Pfam PF00224 Pyruvate kinase, barrel domain 3 362 2.2E-89 T 22-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 4 431 6.2E-113 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PANTHER PTHR11817:SF3 1 16 4.3E-109 T 22-04-2016 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PANTHER PTHR11817:SF3 37 374 4.3E-109 T 22-04-2016 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 SUPERFAMILY SSF50800 91 192 1.31E-15 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 Gene3D G3DSA:3.20.20.60 194 358 1.4E-80 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 Gene3D G3DSA:3.20.20.60 4 93 1.4E-80 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 Gene3D G3DSA:2.40.33.10 94 193 1.4E-14 T 22-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 241 267 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 268 292 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 293 317 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 318 336 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 80 96 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 211 225 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS00975 6f5a70da9a51119ed1b32bb923540790 474 PRINTS PR01050 Pyruvate kinase family signature 337 353 6.0E-48 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 ProSitePatterns PS00646 Ribosomal protein S13 signature. 95 108 - T 22-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 127 28.917 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 PANTHER PTHR10871 1 128 2.1E-64 T 22-04-2016 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 Gene3D G3DSA:1.10.8.50 1 79 7.8E-30 T 22-04-2016 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 SUPERFAMILY SSF46946 2 130 5.45E-46 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 Gene3D G3DSA:4.10.910.10 81 130 3.3E-29 T 22-04-2016 IPR027437 30s ribosomal protein S13, C-terminal UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 Pfam PF00416 Ribosomal protein S13/S18 3 116 1.4E-35 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 122 1.3E-49 T 22-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01325 f0b55fcf5b9f591bcb04bff715717f28 132 PIRSF PIRSF002134 1 132 2.8E-43 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 UPA3_RS01840 c3da8b34152d9d5c67715297fcf6f981 221 SUPERFAMILY SSF53335 8 110 4.5E-9 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS01840 c3da8b34152d9d5c67715297fcf6f981 221 PIRSF PIRSF018637 1 220 3.9E-40 T 22-04-2016 IPR006901 tRNA methyltransferase TrmK GO:0016429 UPA3_RS01840 c3da8b34152d9d5c67715297fcf6f981 221 PANTHER PTHR38451 1 152 6.2E-29 T 22-04-2016 UPA3_RS01840 c3da8b34152d9d5c67715297fcf6f981 221 Gene3D G3DSA:3.40.50.150 9 95 1.7E-9 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS01840 c3da8b34152d9d5c67715297fcf6f981 221 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 20 218 1.1E-66 T 22-04-2016 IPR006901 tRNA methyltransferase TrmK GO:0016429 UPA3_RS01645 34fecd2a37d32594dddd2b7bb90ca4db 191 SUPERFAMILY SSF53067 6 91 7.12E-16 T 22-04-2016 UPA3_RS01645 34fecd2a37d32594dddd2b7bb90ca4db 191 Pfam PF00814 Glycoprotease family 37 125 5.8E-11 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 UPA3_RS01645 34fecd2a37d32594dddd2b7bb90ca4db 191 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 7 152 2.6E-28 T 22-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 UPA3_RS01645 34fecd2a37d32594dddd2b7bb90ca4db 191 Gene3D G3DSA:3.30.420.40 7 123 1.2E-16 T 22-04-2016 UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 Pfam PF00333 Ribosomal protein S5, N-terminal domain 49 112 1.5E-28 T 22-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 Gene3D G3DSA:3.30.160.20 46 111 1.8E-29 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 Gene3D G3DSA:3.30.230.10 115 198 4.9E-32 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 PANTHER PTHR13718 48 203 1.3E-69 T 22-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 SUPERFAMILY SSF54211 118 197 6.07E-26 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 202 33.394 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 SUPERFAMILY SSF54768 45 113 2.3E-23 T 22-04-2016 UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 47 201 6.8E-64 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 ProSitePatterns PS00585 Ribosomal protein S5 signature. 66 98 - T 22-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site UPA3_RS01290 03011c2430be4e3a61b66f220ae969b9 203 Pfam PF03719 Ribosomal protein S5, C-terminal domain 126 196 8.3E-30 T 22-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 UPA3_RS02380 c5ed277c2cd4fa9a73e2cc8924282608 219 Pfam PF00834 Ribulose-phosphate 3 epimerase family 5 200 1.0E-42 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 UPA3_RS02380 c5ed277c2cd4fa9a73e2cc8924282608 219 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 32 46 - T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 UPA3_RS02380 c5ed277c2cd4fa9a73e2cc8924282608 219 PANTHER PTHR11749:SF3 1 203 2.3E-32 T 22-04-2016 UPA3_RS02380 c5ed277c2cd4fa9a73e2cc8924282608 219 Gene3D G3DSA:3.20.20.70 4 213 1.5E-42 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 UPA3_RS02380 c5ed277c2cd4fa9a73e2cc8924282608 219 SUPERFAMILY SSF51366 4 215 8.63E-39 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 UPA3_RS02380 c5ed277c2cd4fa9a73e2cc8924282608 219 PANTHER PTHR11749 1 203 2.3E-32 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 UPA3_RS00215 e1096985c2414dd79f62d657345aad65 120 Pfam PF04193 PQ loop repeat 9 60 5.3E-10 T 22-04-2016 IPR006603 PQ-loop repeat UPA3_RS00710 dd81625cb918389fae639d403c5e4b1f 99 PRINTS PR00125 ATP synthase delta subunit signature 69 87 3.9E-6 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00710 dd81625cb918389fae639d403c5e4b1f 99 PRINTS PR00125 ATP synthase delta subunit signature 54 69 3.9E-6 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS00710 dd81625cb918389fae639d403c5e4b1f 99 Pfam PF00213 ATP synthase delta (OSCP) subunit 16 90 1.2E-16 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 UPA3_RS02960 46a633c9b28f01cf8ae83d16da6620c4 169 SUPERFAMILY SSF55729 2 167 2.03E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase UPA3_RS02960 46a633c9b28f01cf8ae83d16da6620c4 169 PANTHER PTHR23091 46 169 2.8E-17 T 22-04-2016 UPA3_RS02960 46a633c9b28f01cf8ae83d16da6620c4 169 Gene3D G3DSA:3.40.630.30 2 169 2.7E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase UPA3_RS02960 46a633c9b28f01cf8ae83d16da6620c4 169 Pfam PF00583 Acetyltransferase (GNAT) family 60 148 2.4E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 UPA3_RS00505 c529a58f63937598fb638449eb9c761e 173 SUPERFAMILY SSF116734 22 171 2.94E-19 T 22-04-2016 UPA3_RS00505 c529a58f63937598fb638449eb9c761e 173 Pfam PF01420 Type I restriction modification DNA specificity domain 12 154 1.0E-9 T 22-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 UPA3_RS01505 4dca5e4ac4ed570c10b5622f4da132ff 196 SUPERFAMILY SSF46689 7 67 9.75E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 UPA3_RS01505 4dca5e4ac4ed570c10b5622f4da132ff 196 Gene3D G3DSA:1.10.10.60 12 53 7.3E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 UPA3_RS03090 50e39382d02a9cb95353940a49210f12 166 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 114 164 8.6E-16 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 UPA3_RS03090 50e39382d02a9cb95353940a49210f12 166 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 115 163 3.4E-10 T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 UPA3_RS03090 50e39382d02a9cb95353940a49210f12 166 Gene3D G3DSA:1.20.5.1030 112 163 1.1E-10 T 22-04-2016 UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 Pfam PF05175 Methyltransferase small domain 97 196 6.5E-17 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 PANTHER PTHR18895:SF64 47 290 1.4E-40 T 22-04-2016 UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 20 261 7.1E-40 T 22-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 PANTHER PTHR18895 47 290 1.4E-40 T 22-04-2016 UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 SUPERFAMILY SSF53335 1 265 4.92E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS00030 958d1714e732d299dbdb8603679da43a 290 Gene3D G3DSA:3.40.50.150 88 281 2.3E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase UPA3_RS01615 b469454538f00429c3741fd22006248e 303 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 7 288 5.8E-89 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 UPA3_RS01615 b469454538f00429c3741fd22006248e 303 SUPERFAMILY SSF51658 6 296 1.31E-83 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain UPA3_RS01615 b469454538f00429c3741fd22006248e 303 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 220 236 - T 22-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 UPA3_RS01615 b469454538f00429c3741fd22006248e 303 Hamap MF_00152 Probable endonuclease 4 [nfo]. 6 291 43.184 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 UPA3_RS01615 b469454538f00429c3741fd22006248e 303 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 181 188 - T 22-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 UPA3_RS01615 b469454538f00429c3741fd22006248e 303 Pfam PF01261 Xylose isomerase-like TIM barrel 25 244 2.6E-33 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain UPA3_RS01615 b469454538f00429c3741fd22006248e 303 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 75 83 - T 22-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 UPA3_RS01615 b469454538f00429c3741fd22006248e 303 Gene3D G3DSA:3.20.20.150 6 289 1.2E-89 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain UPA3_RS01615 b469454538f00429c3741fd22006248e 303 PANTHER PTHR21445 1 294 2.1E-82 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 UPA3_RS01615 b469454538f00429c3741fd22006248e 303 SMART SM00518 7 291 3.5E-139 T 22-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 PANTHER PTHR33317 1 141 6.3E-25 T 22-04-2016 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 145 20.901 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 SMART SM00732 1 110 8.0E-30 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 4 141 4.0E-23 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 Pfam PF03652 Holliday junction resolvase 1 142 1.3E-33 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 Gene3D G3DSA:3.30.420.140 1 144 3.9E-34 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 UPA3_RS01940 9595dd16b96bdfcbab5ef58b05874f83 147 SUPERFAMILY SSF53098 1 143 1.17E-29 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 UPA3_RS01680 05789dfa2d41348fecc04d807132c00a 83 Gene3D G3DSA:3.30.1230.10 3 82 4.9E-8 T 22-04-2016 IPR007393 Domain of unknown function DUF448 UPA3_RS01680 05789dfa2d41348fecc04d807132c00a 83 SUPERFAMILY SSF64376 3 81 1.03E-8 T 22-04-2016 IPR007393 Domain of unknown function DUF448 UPA3_RS01680 05789dfa2d41348fecc04d807132c00a 83 Pfam PF04296 Protein of unknown function (DUF448) 8 76 2.0E-6 T 22-04-2016 IPR007393 Domain of unknown function DUF448 UPA3_RS00350 cab5996f5fe095044e15745b86918ca6 204 Gene3D G3DSA:1.10.10.10 3 51 4.1E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain UPA3_RS00350 cab5996f5fe095044e15745b86918ca6 204 SUPERFAMILY SSF46785 3 54 1.09E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain UPA3_RS00350 cab5996f5fe095044e15745b86918ca6 204 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 50 1.1E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 SMART SM00411 8 97 1.3E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 Pfam PF00216 Bacterial DNA-binding protein 9 97 6.6E-23 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 PRINTS PR01727 Prokaryotic integration host factor signature 81 95 6.0E-7 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 PRINTS PR01727 Prokaryotic integration host factor signature 47 62 6.0E-7 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 PRINTS PR01727 Prokaryotic integration host factor signature 65 78 6.0E-7 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 PANTHER PTHR33175 9 117 4.2E-20 T 22-04-2016 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 Gene3D G3DSA:4.10.520.10 9 98 2.6E-22 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 UPA3_RS01470 5a394bd5e270e9dae20f6c81205e0674 130 SUPERFAMILY SSF47729 9 97 1.24E-22 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 UPA3_RS02530 867fe2aff922d6c30268f4bc917ad39d 173 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 7 171 8.4E-62 T 22-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 UPA3_RS02530 867fe2aff922d6c30268f4bc917ad39d 173 PANTHER PTHR32315 4 173 3.2E-74 T 22-04-2016 UPA3_RS02530 867fe2aff922d6c30268f4bc917ad39d 173 Pfam PF00156 Phosphoribosyl transferase domain 37 151 5.2E-14 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 UPA3_RS02530 867fe2aff922d6c30268f4bc917ad39d 173 Gene3D G3DSA:3.40.50.2020 5 172 2.3E-60 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like UPA3_RS02530 867fe2aff922d6c30268f4bc917ad39d 173 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 7 173 35.82 T 22-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 UPA3_RS02530 867fe2aff922d6c30268f4bc917ad39d 173 SUPERFAMILY SSF53271 8 167 1.09E-47 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 PANTHER PTHR24220 8 218 7.3E-71 T 22-04-2016 UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 Gene3D G3DSA:3.40.50.300 2 226 7.0E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 SUPERFAMILY SSF52540 5 226 1.78E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 SMART SM00382 32 213 4.7E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 PANTHER PTHR24220:SF523 8 218 7.3E-71 T 22-04-2016 UPA3_RS00490 891831325da65e8af51cec3ba8b67ace 236 Pfam PF00005 ABC transporter 25 165 4.6E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 UPA3_RS01975 987fdd48c6cfe85348b82a1601ba55dd 77 SUPERFAMILY SSF57997 12 76 7.85E-5 T 22-04-2016 UPA3_RS03220 fbf4a523b7e419a097e7586f1eb0c4bf 124 SUPERFAMILY SSF116734 1 63 1.52E-7 T 22-04-2016 UPA3_RS00475 ebfcf6bf2850e03a0ca78e3264fd60cd 567 PANTHER PTHR37292:SF1 1 561 1.8E-41 T 22-04-2016 UPA3_RS00475 ebfcf6bf2850e03a0ca78e3264fd60cd 567 PANTHER PTHR37292 1 561 1.8E-41 T 22-04-2016 UPA3_RS00475 ebfcf6bf2850e03a0ca78e3264fd60cd 567 Pfam PF03235 Protein of unknown function DUF262 17 258 2.6E-34 T 22-04-2016 IPR004919 Domain of unknown function DUF262 UPA3_RS00720 40f8c0c9a2f0f568e69c1a277066cff8 130 SUPERFAMILY SSF81573 37 89 5.75E-5 T 22-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain UPA3_RS00720 40f8c0c9a2f0f568e69c1a277066cff8 130 Pfam PF00430 ATP synthase B/B' CF(0) 2 105 3.4E-12 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 UPA3_RS00720 40f8c0c9a2f0f568e69c1a277066cff8 130 PANTHER PTHR33445 1 130 1.1E-12 T 22-04-2016 UPA3_RS00510 41b89724da118022c60f5daf489b9110 91 SUPERFAMILY SSF116734 5 81 1.8E-13 T 22-04-2016 UPA3_RS00510 41b89724da118022c60f5daf489b9110 91 Pfam PF01420 Type I restriction modification DNA specificity domain 5 67 6.3E-11 T 22-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 UPA3_RS01970 dd6b92fbeba09365cc1bbdaad27ff478 249 Pfam PF07198 Protein of unknown function (DUF1410) 64 141 5.8E-14 T 22-04-2016 IPR009849 Domain of unknown function DUF1410 UPA3_RS00585 c6fe05234d3446a20aa043ecf2091666 375 SUPERFAMILY SSF53098 12 182 2.98E-15 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 UPA3_RS00585 c6fe05234d3446a20aa043ecf2091666 375 Gene3D G3DSA:3.30.420.10 12 185 3.4E-13 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 UPA3_RS02455 bb146b024a5a55c70ea90580491ab26b 83 SMART SM00988 10 75 3.4E-7 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS02455 bb146b024a5a55c70ea90580491ab26b 83 SUPERFAMILY SSF69287 1 77 8.24E-6 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal UPA3_RS02455 bb146b024a5a55c70ea90580491ab26b 83 Gene3D G3DSA:2.60.260.20 1 76 4.7E-5 T 22-04-2016 UPA3_RS02485 e759ea6bf515278b551bd4eef37d0e51 116 PIRSF PIRSF028340 1 116 2.7E-57 T 22-04-2016 IPR016881 Uncharacterised conserved protein UCP028340 UPA3_RS01050 a4500e4177adfc807110ce24272f44a9 74 SUPERFAMILY SSF55008 5 68 2.88E-8 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 UPA3_RS01050 a4500e4177adfc807110ce24272f44a9 74 Gene3D G3DSA:3.30.70.100 10 70 1.0E-9 T 22-04-2016