CKY39_RS00005	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CKY39_RS00010	SM00480	DNA polymerase III beta subunit
CKY39_RS00015	SM00387	Histidine kinase-like ATPases
CKY39_RS00015	SM00433	TopoisomeraseII
CKY39_RS00050	SM00155	Phospholipase D. Active site motifs.
CKY39_RS00100	SM00327	von Willebrand factor (vWF) type A domain
CKY39_RS00100	SM00609	Vault protein Inter-alpha-Trypsin domain
CKY39_RS00125	SM00387	Histidine kinase-like ATPases
CKY39_RS00125	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS00130	SM00448	cheY-homologous receiver domain
CKY39_RS00130	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS00140	SM00422	helix_turn_helix, mercury resistance
CKY39_RS00160	SM00825	Beta-ketoacyl synthase
CKY39_RS00175	SM00448	cheY-homologous receiver domain
CKY39_RS00175	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS00220	SM00460	Transglutaminase/protease-like homologues
CKY39_RS00225	SM01228	CKY39_RS00225
CKY39_RS00250	SM00470	ParB-like nuclease domain
CKY39_RS00280	SM01118	CKY39_RS00280
CKY39_RS00285	SM00422	helix_turn_helix, mercury resistance
CKY39_RS00315	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00320	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00365	SM00671	Sel1-like repeats.
CKY39_RS00415	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS00450	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS00470	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00490	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00495	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00535	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS00600	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00625	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CKY39_RS00640	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS00640	SM00871	Bacterial transcription activator, effector binding domain
CKY39_RS00700	SM00986	Uracil DNA glycosylase superfamily
CKY39_RS00700	SM00987	UreE urease accessory protein, C-terminal domain 
CKY39_RS00720	SM01012	CKY39_RS00720
CKY39_RS00730	SM00327	von Willebrand factor (vWF) type A domain
CKY39_RS00750	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00755	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00805	SM00903	Flavin reductase like domain
CKY39_RS00835	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS00845	SM00155	Phospholipase D. Active site motifs.
CKY39_RS00860	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00865	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00890	SM01230	CKY39_RS00890
CKY39_RS00900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS00900	SM00895	CKY39_RS00900
CKY39_RS00955	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS00990	SM00341	Helicase and RNase D C-terminal
CKY39_RS00990	SM00487	DEAD-like helicases superfamily
CKY39_RS00990	SM00490	helicase superfamily c-terminal domain
CKY39_RS00990	SM00956	CKY39_RS00990
CKY39_RS01005	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS01010	SM00866	CKY39_RS01010
CKY39_RS01030	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS01035	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS01035	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CKY39_RS01100	SM01018	B12 binding domain
CKY39_RS01165	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01170	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01190	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS01240	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01240	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS01275	SM00331	Sigma factor PP2C-like phosphatases
CKY39_RS01275	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CKY39_RS01315	SM00219	Tyrosine kinase, catalytic domain
CKY39_RS01320	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01330	SM00938	Nitrogen regulatory protein P-II
CKY39_RS01390	SM01005	Alanine racemase, C-terminal domain
CKY39_RS01425	SM01007	Class II Aldolase and Adducin N-terminal domain
CKY39_RS01495	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS01515	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS01560	SM00387	Histidine kinase-like ATPases
CKY39_RS01560	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS01565	SM00448	cheY-homologous receiver domain
CKY39_RS01565	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS01575	SM00825	Beta-ketoacyl synthase
CKY39_RS01635	SM00845	GatB domain
CKY39_RS01695	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS01700	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS01730	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01770	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS01825	SM00487	DEAD-like helicases superfamily
CKY39_RS01825	SM00490	helicase superfamily c-terminal domain
CKY39_RS01830	SM00244	prohibitin homologues
CKY39_RS01850	SM00878	Biotin carboxylase C-terminal domain
CKY39_RS01900	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CKY39_RS01925	SM00829	Enoylreductase
CKY39_RS01935	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS01945	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS02060	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02065	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02090	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CKY39_RS02090	SM00458	Ricin-type beta-trefoil
CKY39_RS02095	SM01133	CKY39_RS02095
CKY39_RS02130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS02130	SM00866	CKY39_RS02130
CKY39_RS02175	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02180	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS02200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS02255	SM00448	cheY-homologous receiver domain
CKY39_RS02255	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS02260	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CKY39_RS02260	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CKY39_RS02295	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02385	SM00642	Alpha-amylase domain
CKY39_RS02395	SM00642	Alpha-amylase domain
CKY39_RS02400	SM00642	Alpha-amylase domain
CKY39_RS02480	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02485	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02505	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS02510	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS02540	SM00822	CKY39_RS02540
CKY39_RS02545	SM00822	CKY39_RS02545
CKY39_RS02600	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
CKY39_RS02635	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS02665	SM00836	DALR anticodon binding domain
CKY39_RS02665	SM01016	Arginyl tRNA synthetase N terminal dom
CKY39_RS02685	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS02695	SM00155	Phospholipase D. Active site motifs.
CKY39_RS02710	SM00867	YceI-like domain 
CKY39_RS02715	SM00867	YceI-like domain 
CKY39_RS02725	SM00387	Histidine kinase-like ATPases
CKY39_RS02725	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS02725	SM00448	cheY-homologous receiver domain
CKY39_RS02730	SM00981	CKY39_RS02730
CKY39_RS02785	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS02835	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS02850	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS02905	SM00912	haemagglutination activity domain
CKY39_RS02925	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS02925	SM00387	Histidine kinase-like ATPases
CKY39_RS02925	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS02925	SM00448	cheY-homologous receiver domain
CKY39_RS02935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS02935	SM00387	Histidine kinase-like ATPases
CKY39_RS02935	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS02935	SM00448	cheY-homologous receiver domain
CKY39_RS02985	SM00219	Tyrosine kinase, catalytic domain
CKY39_RS02990	SM00925	MltA specific insert domain
CKY39_RS03035	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS03035	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS03115	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS03115	SM00448	cheY-homologous receiver domain
CKY39_RS03165	SM00986	Uracil DNA glycosylase superfamily
CKY39_RS03165	SM00987	UreE urease accessory protein, C-terminal domain 
CKY39_RS03200	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CKY39_RS03200	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CKY39_RS03205	SM00649	Ribosomal protein L11/L12
CKY39_RS03230	SM00663	RNA polymerase I subunit A N-terminus
CKY39_RS03250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS03250	SM00387	Histidine kinase-like ATPases
CKY39_RS03250	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS03255	SM00448	cheY-homologous receiver domain
CKY39_RS03340	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS03420	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS03470	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS03475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS03475	SM00387	Histidine kinase-like ATPases
CKY39_RS03475	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS03475	SM00448	cheY-homologous receiver domain
CKY39_RS03480	SM00448	cheY-homologous receiver domain
CKY39_RS03480	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS03525	SM00487	DEAD-like helicases superfamily
CKY39_RS03525	SM00490	helicase superfamily c-terminal domain
CKY39_RS03575	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS03600	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS03620	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CKY39_RS03635	SM00829	Enoylreductase
CKY39_RS03650	SM00822	CKY39_RS03650
CKY39_RS03730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS03740	SM00897	FIST N domain
CKY39_RS03740	SM01204	CKY39_RS03740
CKY39_RS03890	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS03905	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS03960	SM00858	CKY39_RS03960
CKY39_RS03980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS03980	SM00895	CKY39_RS03980
CKY39_RS04005	SM00822	CKY39_RS04005
CKY39_RS04070	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04080	SM00965	Secretin and TonB N terminus short domain
CKY39_RS04105	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS04120	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS04185	SM00893	Electron transfer flavoprotein domain
CKY39_RS04190	SM00893	Electron transfer flavoprotein domain
CKY39_RS04290	SM00945	ProQ/FINO family
CKY39_RS04315	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CKY39_RS04315	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04325	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS04355	SM00363	S4 RNA-binding domain
CKY39_RS04360	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS04380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS04380	SM00895	CKY39_RS04380
CKY39_RS04430	SM01351	CKY39_RS04430
CKY39_RS04455	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS04530	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CKY39_RS04535	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CKY39_RS04560	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04560	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS04630	SM00842	Cell division protein FtsA
CKY39_RS04635	SM00864	Tubulin/FtsZ family, GTPase domain
CKY39_RS04635	SM00865	Tubulin/FtsZ family, C-terminal domain
CKY39_RS04660	SM00028	Tetratricopeptide repeats
CKY39_RS04670	SM00563	Phosphate acyltransferases
CKY39_RS04695	SM00955	CKY39_RS04695
CKY39_RS04705	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS04705	SM00448	cheY-homologous receiver domain
CKY39_RS04795	SM00644	CKY39_RS04795
CKY39_RS04800	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04800	SM00448	cheY-homologous receiver domain
CKY39_RS04805	SM00387	Histidine kinase-like ATPases
CKY39_RS04805	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS04820	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04820	SM00962	SRP54-type protein, GTPase domain
CKY39_RS04820	SM00963	SRP54-type protein, helical bundle domain
CKY39_RS04825	SM00248	ankyrin repeats
CKY39_RS04840	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04840	SM00448	cheY-homologous receiver domain
CKY39_RS04850	SM00387	Histidine kinase-like ATPases
CKY39_RS04850	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS04855	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS04875	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS04875	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS04880	SM00855	Phosphoglycerate mutase family
CKY39_RS04895	SM00905	Dihydroneopterin aldolase
CKY39_RS04925	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS04950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS04970	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS04975	SM01034	Sensors of blue-light using FAD
CKY39_RS05035	SM00344	helix_turn_helix ASNC type
CKY39_RS05060	SM00448	cheY-homologous receiver domain
CKY39_RS05060	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS05065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS05065	SM00387	Histidine kinase-like ATPases
CKY39_RS05065	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS05110	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS05190	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05200	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05220	SM01130	CKY39_RS05220
CKY39_RS05240	SM01209	CKY39_RS05240
CKY39_RS05245	SM01209	CKY39_RS05245
CKY39_RS05250	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05265	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05280	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05325	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS05390	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05495	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05500	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05530	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05590	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05600	SM00822	CKY39_RS05600
CKY39_RS05615	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS05630	SM00883	Chaperonin 10 Kd subunit
CKY39_RS05660	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS05680	SM00155	Phospholipase D. Active site motifs.
CKY39_RS05765	SM01219	CKY39_RS05765
CKY39_RS05775	SM00842	Cell division protein FtsA
CKY39_RS05810	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CKY39_RS05830	SM01321	CKY39_RS05830
CKY39_RS05845	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS05880	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CKY39_RS06040	SM00984	UDP binding domain
CKY39_RS06100	SM00226	Low molecular weight phosphatase family
CKY39_RS06185	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS06235	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS06255	SM00271	DnaJ molecular chaperone homology domain
CKY39_RS06270	SM00965	Secretin and TonB N terminus short domain
CKY39_RS06285	SM00912	haemagglutination activity domain
CKY39_RS06305	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06305	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS06305	SM01043	Bacterial transcriptional activator domain
CKY39_RS06320	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CKY39_RS06335	SM00226	Low molecular weight phosphatase family
CKY39_RS06340	SM00226	Low molecular weight phosphatase family
CKY39_RS06350	SM00448	cheY-homologous receiver domain
CKY39_RS06410	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06430	SM00912	haemagglutination activity domain
CKY39_RS06475	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06480	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06485	SM01119	CKY39_RS06485
CKY39_RS06505	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS06565	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06570	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06590	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS06615	SM00903	Flavin reductase like domain
CKY39_RS06630	SM00822	CKY39_RS06630
CKY39_RS06640	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06645	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06710	SM00327	von Willebrand factor (vWF) type A domain
CKY39_RS06740	SM00986	Uracil DNA glycosylase superfamily
CKY39_RS06740	SM00987	UreE urease accessory protein, C-terminal domain 
CKY39_RS06750	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS06800	SM00829	Enoylreductase
CKY39_RS06805	SM00448	cheY-homologous receiver domain
CKY39_RS06850	SM00988	UreE urease accessory protein, N-terminal domain
CKY39_RS06855	SM00966	SpoVT / AbrB like domain 
CKY39_RS06865	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS06895	SM00387	Histidine kinase-like ATPases
CKY39_RS06895	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS06895	SM00448	cheY-homologous receiver domain
CKY39_RS06900	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS06900	SM00448	cheY-homologous receiver domain
CKY39_RS06920	SM00957	SecA DEAD-like domain
CKY39_RS06920	SM00958	SecA preprotein cross-linking domain
CKY39_RS06980	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS07010	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CKY39_RS07035	SM01091	Transporter associated domain
CKY39_RS07050	SM00937	CKY39_RS07050
CKY39_RS07070	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS07085	SM00344	helix_turn_helix ASNC type
CKY39_RS07100	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS07155	SM00978	CKY39_RS07155
CKY39_RS07175	SM00834	Putative regulatory protein
CKY39_RS07205	SM01034	Sensors of blue-light using FAD
CKY39_RS07220	SM00749	bacterial OsmY and nodulation domain
CKY39_RS07245	SM00387	Histidine kinase-like ATPases
CKY39_RS07250	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS07250	SM00448	cheY-homologous receiver domain
CKY39_RS07255	SM00448	cheY-homologous receiver domain
CKY39_RS07270	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CKY39_RS07270	SM00245	tail specific protease
CKY39_RS07275	SM00855	Phosphoglycerate mutase family
CKY39_RS07280	SM00450	Rhodanese Homology Domain
CKY39_RS07380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS07380	SM00895	CKY39_RS07380
CKY39_RS07390	SM01329	CKY39_RS07390
CKY39_RS07410	SM00344	helix_turn_helix ASNC type
CKY39_RS07465	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS07485	SM00450	Rhodanese Homology Domain
CKY39_RS07500	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS07505	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS07540	SM00822	CKY39_RS07540
CKY39_RS07565	SM00448	cheY-homologous receiver domain
CKY39_RS07570	SM00387	Histidine kinase-like ATPases
CKY39_RS07615	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS07630	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS07655	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS07695	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS07705	SM00387	Histidine kinase-like ATPases
CKY39_RS07705	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS07710	SM00387	Histidine kinase-like ATPases
CKY39_RS07750	SM00463	Small MutS-related domain
CKY39_RS07815	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS07830	SM00271	DnaJ molecular chaperone homology domain
CKY39_RS08035	SM00528	Domain in histone-like proteins of HNS family
CKY39_RS08065	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS08085	SM00858	CKY39_RS08085
CKY39_RS08130	SM00047	Lysozyme subfamily 2
CKY39_RS08135	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CKY39_RS08145	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CKY39_RS08145	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS08150	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CKY39_RS08150	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CKY39_RS08150	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS08155	SM00260	Two component signalling adaptor domain
CKY39_RS08160	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CKY39_RS08160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS08220	SM00448	cheY-homologous receiver domain
CKY39_RS08220	SM00850	LytTr DNA-binding domain
CKY39_RS08275	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS08355	SM00073	Histidine Phosphotransfer domain
CKY39_RS08355	SM00260	Two component signalling adaptor domain
CKY39_RS08355	SM00387	Histidine kinase-like ATPases
CKY39_RS08355	SM01231	CKY39_RS08355
CKY39_RS08365	SM00138	Methyltransferase, chemotaxis proteins 
CKY39_RS08375	SM00448	cheY-homologous receiver domain
CKY39_RS08380	SM00448	cheY-homologous receiver domain
CKY39_RS08400	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS08400	SM00962	SRP54-type protein, GTPase domain
CKY39_RS08440	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS08485	SM00387	Histidine kinase-like ATPases
CKY39_RS08485	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS08490	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS08490	SM00448	cheY-homologous receiver domain
CKY39_RS08585	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS08590	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS08630	SM00387	Histidine kinase-like ATPases
CKY39_RS08630	SM01049	CKY39_RS08630
CKY39_RS08635	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS08635	SM00448	cheY-homologous receiver domain
CKY39_RS08660	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS08785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS08785	SM00895	CKY39_RS08785
CKY39_RS08800	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS08825	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS08850	SM00671	Sel1-like repeats.
CKY39_RS08885	SM00155	Phospholipase D. Active site motifs.
CKY39_RS08890	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS08890	SM00448	cheY-homologous receiver domain
CKY39_RS08895	SM00387	Histidine kinase-like ATPases
CKY39_RS08895	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS08895	SM00448	cheY-homologous receiver domain
CKY39_RS08940	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CKY39_RS08965	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS08970	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS08985	SM01329	CKY39_RS08985
CKY39_RS09000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS09000	SM00895	CKY39_RS09000
CKY39_RS09030	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS09030	SM00895	CKY39_RS09030
CKY39_RS09070	SM00831	Cation transporter/ATPase, N-terminus
CKY39_RS09090	SM00226	Low molecular weight phosphatase family
CKY39_RS09125	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CKY39_RS09130	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS09145	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09175	SM00825	Beta-ketoacyl synthase
CKY39_RS09200	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS09215	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS09250	SM00487	DEAD-like helicases superfamily
CKY39_RS09250	SM00490	helicase superfamily c-terminal domain
CKY39_RS09255	SM00450	Rhodanese Homology Domain
CKY39_RS09275	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS09285	SM01007	Class II Aldolase and Adducin N-terminal domain
CKY39_RS09300	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09310	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS09315	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS09320	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS09345	SM01091	Transporter associated domain
CKY39_RS09360	SM00788	Adenylosuccinate synthetase
CKY39_RS09375	SM00028	Tetratricopeptide repeats
CKY39_RS09530	SM01240	CKY39_RS09530
CKY39_RS09560	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CKY39_RS09560	SM00474	3'-5' exonuclease
CKY39_RS09560	SM00475	5'-3' exonuclease
CKY39_RS09560	SM00482	DNA polymerase A domain
CKY39_RS09595	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS09625	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09645	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS09655	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09660	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09720	SM00450	Rhodanese Homology Domain
CKY39_RS09735	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS09745	SM00248	ankyrin repeats
CKY39_RS09775	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09785	SM00450	Rhodanese Homology Domain
CKY39_RS09810	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS09855	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS09865	SM00895	CKY39_RS09865
CKY39_RS09910	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS09910	SM00895	CKY39_RS09910
CKY39_RS09930	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09935	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09970	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS09975	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CKY39_RS09980	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS09985	SM00327	von Willebrand factor (vWF) type A domain
CKY39_RS10000	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS10005	SM01130	CKY39_RS10005
CKY39_RS10100	SM00411	bacterial (prokaryotic) histone like domain
CKY39_RS10105	SM00316	Ribosomal protein S1-like RNA-binding domain
CKY39_RS10120	SM00830	Chorismate mutase type II
CKY39_RS10135	SM00434	DNA Topoisomerase IV
CKY39_RS10210	SM00919	Malic enzyme, NAD binding domain
CKY39_RS10210	SM01274	CKY39_RS10210
CKY39_RS10215	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS10240	SM00822	CKY39_RS10240
CKY39_RS10260	SM00387	Histidine kinase-like ATPases
CKY39_RS10260	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS10265	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS10265	SM00448	cheY-homologous receiver domain
CKY39_RS10275	SM00612	CKY39_RS10275
CKY39_RS10305	SM00796	Allophanate hydrolase subunit 1
CKY39_RS10310	SM00797	Allophanate hydrolase subunit 2
CKY39_RS10405	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS10435	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS10455	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS10455	SM00448	cheY-homologous receiver domain
CKY39_RS10460	SM00387	Histidine kinase-like ATPases
CKY39_RS10475	SM00869	Autotransporter beta-domain
CKY39_RS10550	SM00822	CKY39_RS10550
CKY39_RS10565	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS10660	SM00829	Enoylreductase
CKY39_RS10670	SM00829	Enoylreductase
CKY39_RS10695	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS10750	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS10795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS10825	SM00014	Acid phosphatase homologues
CKY39_RS10835	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS10840	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS10875	SM00822	CKY39_RS10875
CKY39_RS10900	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS10910	SM00448	cheY-homologous receiver domain
CKY39_RS10910	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS10935	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS10955	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS10955	SM00448	cheY-homologous receiver domain
CKY39_RS10960	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS10960	SM00448	cheY-homologous receiver domain
CKY39_RS10995	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS10995	SM00895	CKY39_RS10995
CKY39_RS11055	SM00852	Probable molybdopterin binding domain
CKY39_RS11060	SM01230	CKY39_RS11060
CKY39_RS11070	SM00387	Histidine kinase-like ATPases
CKY39_RS11070	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS11075	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS11075	SM00448	cheY-homologous receiver domain
CKY39_RS11090	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS11100	SM00852	Probable molybdopterin binding domain
CKY39_RS11105	SM00852	Probable molybdopterin binding domain
CKY39_RS11170	SM00448	cheY-homologous receiver domain
CKY39_RS11170	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS11180	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS11180	SM00387	Histidine kinase-like ATPases
CKY39_RS11180	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS11235	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS11240	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS11275	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS11305	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS11320	SM00564	beta-propeller repeat
CKY39_RS11345	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS11380	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS11395	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CKY39_RS11405	SM00422	helix_turn_helix, mercury resistance
CKY39_RS11490	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS11575	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS11585	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS11595	SM01350	CKY39_RS11595
CKY39_RS11600	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS11640	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS11660	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CKY39_RS11670	SM00474	3'-5' exonuclease
CKY39_RS11700	SM00829	Enoylreductase
CKY39_RS11740	SM00763	PrkA AAA domain
CKY39_RS11745	SM00271	DnaJ molecular chaperone homology domain
CKY39_RS11790	SM00822	CKY39_RS11790
CKY39_RS11795	SM00858	CKY39_RS11795
CKY39_RS11825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS11825	SM00895	CKY39_RS11825
CKY39_RS11835	SM01130	CKY39_RS11835
CKY39_RS11880	SM00155	Phospholipase D. Active site motifs.
CKY39_RS11900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS11900	SM00895	CKY39_RS11900
CKY39_RS11925	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS11930	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS11950	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS11975	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS11990	SM00400	zinc finger
CKY39_RS11990	SM00493	CKY39_RS11990
CKY39_RS12075	SM00841	Elongation factor P, C-terminal
CKY39_RS12075	SM01185	CKY39_RS12075
CKY39_RS12095	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CKY39_RS12095	SM00465	GIY-YIG type nucleases (URI domain)
CKY39_RS12120	SM01329	CKY39_RS12120
CKY39_RS12125	SM00411	bacterial (prokaryotic) histone like domain
CKY39_RS12445	SM00855	Phosphoglycerate mutase family
CKY39_RS12465	SM00528	Domain in histone-like proteins of HNS family
CKY39_RS12470	SM00829	Enoylreductase
CKY39_RS12485	SM00257	Lysin motif
CKY39_RS12535	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CKY39_RS12610	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS12650	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS12665	SM00871	Bacterial transcription activator, effector binding domain
CKY39_RS12680	SM00670	Large family of predicted nucleotide-binding domains
CKY39_RS12720	SM00852	Probable molybdopterin binding domain
CKY39_RS12730	SM01130	CKY39_RS12730
CKY39_RS12745	SM00014	Acid phosphatase homologues
CKY39_RS12755	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS12755	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS12775	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS12795	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS12855	SM00825	Beta-ketoacyl synthase
CKY39_RS12870	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS12915	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS12920	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS12985	SM00822	CKY39_RS12985
CKY39_RS12990	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS13015	SM01192	CKY39_RS13015
CKY39_RS13015	SM01193	CKY39_RS13015
CKY39_RS13060	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CKY39_RS13075	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS13085	SM01130	CKY39_RS13085
CKY39_RS13115	SM00387	Histidine kinase-like ATPases
CKY39_RS13115	SM00433	TopoisomeraseII
CKY39_RS13125	SM00434	DNA Topoisomerase IV
CKY39_RS13175	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS13180	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13200	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS13215	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS13215	SM00448	cheY-homologous receiver domain
CKY39_RS13240	SM00387	Histidine kinase-like ATPases
CKY39_RS13240	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS13240	SM00448	cheY-homologous receiver domain
CKY39_RS13250	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS13260	SM00881	CoA binding domain
CKY39_RS13315	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS13315	SM00448	cheY-homologous receiver domain
CKY39_RS13320	SM00091	PAS domain
CKY39_RS13320	SM00387	Histidine kinase-like ATPases
CKY39_RS13335	SM00460	Transglutaminase/protease-like homologues
CKY39_RS13340	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS13340	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CKY39_RS13350	SM00460	Transglutaminase/protease-like homologues
CKY39_RS13355	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS13380	SM00287	Bacterial SH3 domain homologues
CKY39_RS13390	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS13390	SM00420	helix_turn_helix, Deoxyribose operon repressor
CKY39_RS13390	SM01134	CKY39_RS13390
CKY39_RS13405	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13450	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13465	SM00825	Beta-ketoacyl synthase
CKY39_RS13495	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13510	SM00893	Electron transfer flavoprotein domain
CKY39_RS13515	SM00893	Electron transfer flavoprotein domain
CKY39_RS13535	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13540	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13570	SM00869	Autotransporter beta-domain
CKY39_RS13575	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS13600	SM00822	CKY39_RS13600
CKY39_RS13695	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS13745	SM00972	Spore Coat Protein U domain
CKY39_RS13760	SM00972	Spore Coat Protein U domain
CKY39_RS13785	SM00387	Histidine kinase-like ATPases
CKY39_RS13785	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS13790	SM00448	cheY-homologous receiver domain
CKY39_RS13790	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS13815	SM00869	Autotransporter beta-domain
CKY39_RS13820	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS13880	SM01144	CKY39_RS13880
CKY39_RS13915	SM00155	Phospholipase D. Active site motifs.
CKY39_RS14025	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS14060	SM00822	CKY39_RS14060
CKY39_RS14075	SM00387	Histidine kinase-like ATPases
CKY39_RS14075	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS14080	SM00448	cheY-homologous receiver domain
CKY39_RS14080	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS14090	SM00014	Acid phosphatase homologues
CKY39_RS14170	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS14220	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS14260	SM00091	PAS domain
CKY39_RS14260	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS14265	SM00882	Coenzyme A transferase
CKY39_RS14270	SM00882	Coenzyme A transferase
CKY39_RS14355	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS14370	SM00271	DnaJ molecular chaperone homology domain
CKY39_RS14375	SM00855	Phosphoglycerate mutase family
CKY39_RS14430	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CKY39_RS14470	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS14515	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS14545	SM00481	DNA polymerase alpha chain like domain
CKY39_RS14580	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
CKY39_RS14630	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS14650	SM00460	Transglutaminase/protease-like homologues
CKY39_RS14685	SM00448	cheY-homologous receiver domain
CKY39_RS14685	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS14705	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS14720	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CKY39_RS14740	SM00822	CKY39_RS14740
CKY39_RS14755	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS14830	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS14845	SM00244	prohibitin homologues
CKY39_RS14860	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS14870	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS14870	SM00448	cheY-homologous receiver domain
CKY39_RS14875	SM00387	Histidine kinase-like ATPases
CKY39_RS14875	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS14875	SM00448	cheY-homologous receiver domain
CKY39_RS14910	SM00834	Putative regulatory protein
CKY39_RS14960	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS14985	SM01217	CKY39_RS14985
CKY39_RS15010	SM01007	Class II Aldolase and Adducin N-terminal domain
CKY39_RS15020	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS15020	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS15095	SM00450	Rhodanese Homology Domain
CKY39_RS15215	SM00028	Tetratricopeptide repeats
CKY39_RS15225	SM00478	endonuclease III
CKY39_RS15290	SM00857	Resolvase, N terminal domain
CKY39_RS15320	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS15320	SM00448	cheY-homologous receiver domain
CKY39_RS15325	SM00387	Histidine kinase-like ATPases
CKY39_RS15380	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS15380	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS15390	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS15395	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS15415	SM00363	S4 RNA-binding domain
CKY39_RS15420	SM00387	Histidine kinase-like ATPases
CKY39_RS15420	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS15425	SM00448	cheY-homologous receiver domain
CKY39_RS15425	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS15470	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS15485	SM00060	Fibronectin type 3 domain
CKY39_RS15490	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS15495	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS15595	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS15595	SM00994	ClpX C4-type zinc finger
CKY39_RS15595	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS15655	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS15720	SM00822	CKY39_RS15720
CKY39_RS15735	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS15735	SM00895	CKY39_RS15735
CKY39_RS15770	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS15925	SM00855	Phosphoglycerate mutase family
CKY39_RS15935	SM00478	endonuclease III
CKY39_RS15935	SM00525	CKY39_RS15935
CKY39_RS15965	SM00487	DEAD-like helicases superfamily
CKY39_RS15965	SM00490	helicase superfamily c-terminal domain
CKY39_RS15965	SM00982	CKY39_RS15965
CKY39_RS15965	SM01058	CarD-like/TRCF domain
CKY39_RS15980	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS15980	SM00387	Histidine kinase-like ATPases
CKY39_RS15980	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS15985	SM00448	cheY-homologous receiver domain
CKY39_RS15985	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS16000	SM00822	CKY39_RS16000
CKY39_RS16045	SM00857	Resolvase, N terminal domain
CKY39_RS16055	SM00954	Region found in RelA / SpoT proteins
CKY39_RS16100	SM00470	ParB-like nuclease domain
CKY39_RS16310	SM00857	Resolvase, N terminal domain
CKY39_RS16315	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS16330	SM00316	Ribosomal protein S1-like RNA-binding domain
CKY39_RS16330	SM00357	Cold shock protein domain
CKY39_RS16330	SM00955	CKY39_RS16330
CKY39_RS16335	SM00822	CKY39_RS16335
CKY39_RS16405	SM00935	Outer membrane protein (OmpH-like)
CKY39_RS16440	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CKY39_RS16445	SM00851	MGS-like domain
CKY39_RS16445	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CKY39_RS16470	SM01103	CKY39_RS16470
CKY39_RS16480	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS16510	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS16510	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS16545	SM00870	CKY39_RS16545
CKY39_RS16610	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS16655	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS16655	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS16680	SM01006	Siderophore biosynthesis protein domain
CKY39_RS16690	SM00387	Histidine kinase-like ATPases
CKY39_RS16690	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS16695	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS16695	SM00448	cheY-homologous receiver domain
CKY39_RS16705	SM00248	ankyrin repeats
CKY39_RS16735	SM00240	Forkhead associated domain
CKY39_RS16750	SM00448	cheY-homologous receiver domain
CKY39_RS16755	SM00387	Histidine kinase-like ATPases
CKY39_RS16755	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS16755	SM00448	cheY-homologous receiver domain
CKY39_RS16765	SM00138	Methyltransferase, chemotaxis proteins 
CKY39_RS16770	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CKY39_RS16770	SM00387	Histidine kinase-like ATPases
CKY39_RS16770	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS16770	SM00448	cheY-homologous receiver domain
CKY39_RS16775	SM00488	CKY39_RS16775
CKY39_RS16775	SM00491	CKY39_RS16775
CKY39_RS16815	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS16850	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS16855	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS16860	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS16870	SM00450	Rhodanese Homology Domain
CKY39_RS16895	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS16940	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS16960	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS16960	SM00387	Histidine kinase-like ATPases
CKY39_RS16960	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS16960	SM00448	cheY-homologous receiver domain
CKY39_RS16965	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS16965	SM00448	cheY-homologous receiver domain
CKY39_RS16995	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS17055	SM00248	ankyrin repeats
CKY39_RS17165	SM00316	Ribosomal protein S1-like RNA-binding domain
CKY39_RS17165	SM00732	Likely ribonuclease with RNase H fold.
CKY39_RS17170	SM00387	Histidine kinase-like ATPases
CKY39_RS17175	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS17175	SM00448	cheY-homologous receiver domain
CKY39_RS17230	SM00965	Secretin and TonB N terminus short domain
CKY39_RS17245	SM00473	divergent subfamily of APPLE domains
CKY39_RS17350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS17350	SM00895	CKY39_RS17350
CKY39_RS17385	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS17395	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS17425	SM00829	Enoylreductase
CKY39_RS17445	SM00886	Stress responsive A/B Barrel Domain
CKY39_RS17480	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS17485	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS17515	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CKY39_RS17525	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS17570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS17570	SM00895	CKY39_RS17570
CKY39_RS17575	SM01211	CKY39_RS17575
CKY39_RS17585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CKY39_RS17595	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS17595	SM00448	cheY-homologous receiver domain
CKY39_RS17625	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS17645	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CKY39_RS17645	SM00292	breast cancer carboxy-terminal domain
CKY39_RS17645	SM00532	Ligase N family
CKY39_RS17650	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CKY39_RS17655	SM00968	SMC proteins Flexible Hinge Domain
CKY39_RS17680	SM00822	CKY39_RS17680
CKY39_RS17775	SM00028	Tetratricopeptide repeats
CKY39_RS17790	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS17835	SM00830	Chorismate mutase type II
CKY39_RS17880	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CKY39_RS17885	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS17915	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS17915	SM01240	CKY39_RS17915
CKY39_RS18005	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18045	SM00244	prohibitin homologues
CKY39_RS18055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS18055	SM00895	CKY39_RS18055
CKY39_RS18120	SM00387	Histidine kinase-like ATPases
CKY39_RS18120	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS18120	SM00448	cheY-homologous receiver domain
CKY39_RS18125	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS18125	SM00448	cheY-homologous receiver domain
CKY39_RS18130	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS18130	SM00448	cheY-homologous receiver domain
CKY39_RS18140	SM00387	Histidine kinase-like ATPases
CKY39_RS18140	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS18140	SM00448	cheY-homologous receiver domain
CKY39_RS18145	SM00052	Putative diguanylate phosphodiesterase
CKY39_RS18155	SM00448	cheY-homologous receiver domain
CKY39_RS18220	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18220	SM00487	DEAD-like helicases superfamily
CKY39_RS18220	SM00490	helicase superfamily c-terminal domain
CKY39_RS18220	SM00847	Helicase associated domain (HA2)  Add an annotation
CKY39_RS18225	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18270	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18285	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS18295	SM00870	CKY39_RS18295
CKY39_RS18340	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS18345	SM00895	CKY39_RS18345
CKY39_RS18365	SM00316	Ribosomal protein S1-like RNA-binding domain
CKY39_RS18395	SM01209	CKY39_RS18395
CKY39_RS18395	SM01210	CKY39_RS18395
CKY39_RS18415	SM00563	Phosphate acyltransferases
CKY39_RS18445	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18485	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS18515	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS18520	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS18565	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS18575	SM00450	Rhodanese Homology Domain
CKY39_RS18595	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18600	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS18615	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS18620	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS18645	SM00460	Transglutaminase/protease-like homologues
CKY39_RS18660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS18660	SM00387	Histidine kinase-like ATPases
CKY39_RS18660	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS18665	SM00448	cheY-homologous receiver domain
CKY39_RS18665	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS18770	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS18800	SM00387	Histidine kinase-like ATPases
CKY39_RS18800	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS18805	SM00448	cheY-homologous receiver domain
CKY39_RS18805	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS18860	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CKY39_RS18870	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS18960	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS18965	SM00829	Enoylreductase
CKY39_RS19000	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS19000	SM00448	cheY-homologous receiver domain
CKY39_RS19005	SM00387	Histidine kinase-like ATPases
CKY39_RS19010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CKY39_RS19015	SM00387	Histidine kinase-like ATPases
CKY39_RS19015	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS19020	SM00448	cheY-homologous receiver domain
CKY39_RS19020	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS19025	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS19050	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS19055	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS19070	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS19085	SM00917	LeuA allosteric (dimerisation) domain
CKY39_RS19140	SM00938	Nitrogen regulatory protein P-II
CKY39_RS19175	SM00422	helix_turn_helix, mercury resistance
CKY39_RS19245	SM00155	Phospholipase D. Active site motifs.
CKY39_RS19275	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS19285	SM00852	Probable molybdopterin binding domain
CKY39_RS19300	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS19320	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS19335	SM00493	CKY39_RS19335
CKY39_RS19345	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS19380	SM00357	Cold shock protein domain
CKY39_RS19380	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS19380	SM00959	Rho termination factor, N-terminal domain
CKY39_RS19405	SM00091	PAS domain
CKY39_RS19405	SM00387	Histidine kinase-like ATPases
CKY39_RS19405	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS19410	SM00448	cheY-homologous receiver domain
CKY39_RS19410	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS19420	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS19450	SM00855	Phosphoglycerate mutase family
CKY39_RS19465	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS19470	SM00290	Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger
CKY39_RS19555	SM00857	Resolvase, N terminal domain
CKY39_RS19660	SM00507	HNH nucleases
CKY39_RS19705	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS19710	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS19845	SM00344	helix_turn_helix ASNC type
CKY39_RS19875	SM00357	Cold shock protein domain
CKY39_RS19885	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS19900	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
CKY39_RS19935	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS19945	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CKY39_RS19960	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS20005	SM00788	Adenylosuccinate synthetase
CKY39_RS20020	SM00244	prohibitin homologues
CKY39_RS20045	SM00564	beta-propeller repeat
CKY39_RS20070	SM00028	Tetratricopeptide repeats
CKY39_RS20080	SM00562	CKY39_RS20080
CKY39_RS20085	SM00363	S4 RNA-binding domain
CKY39_RS20105	SM00491	CKY39_RS20105
CKY39_RS20115	SM00331	Sigma factor PP2C-like phosphatases
CKY39_RS20115	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CKY39_RS20140	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS20200	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CKY39_RS20200	SM00091	PAS domain
CKY39_RS20200	SM00387	Histidine kinase-like ATPases
CKY39_RS20200	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS20205	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS20205	SM00448	cheY-homologous receiver domain
CKY39_RS20260	SM00823	Phosphopantetheine attachment site
CKY39_RS20335	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS20335	SM00448	cheY-homologous receiver domain
CKY39_RS20355	SM00479	CKY39_RS20355
CKY39_RS20395	SM00487	DEAD-like helicases superfamily
CKY39_RS20395	SM00490	helicase superfamily c-terminal domain
CKY39_RS20425	SM00344	helix_turn_helix ASNC type
CKY39_RS20440	SM00878	Biotin carboxylase C-terminal domain
CKY39_RS20470	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS20705	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS20715	SM00448	cheY-homologous receiver domain
CKY39_RS20730	SM00895	CKY39_RS20730
CKY39_RS20760	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS20790	SM00344	helix_turn_helix ASNC type
CKY39_RS20850	SM00965	Secretin and TonB N terminus short domain
CKY39_RS20870	SM00248	ankyrin repeats
CKY39_RS20945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS20960	SM00090	RIO-like kinase
CKY39_RS20975	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
CKY39_RS20975	SM00508	Cysteine-rich motif following a subset of SET domains
CKY39_RS20995	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS21005	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CKY39_RS21045	SM00028	Tetratricopeptide repeats
CKY39_RS21055	SM00822	CKY39_RS21055
CKY39_RS21160	SM00155	Phospholipase D. Active site motifs.
CKY39_RS21190	SM00965	Secretin and TonB N terminus short domain
CKY39_RS21195	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CKY39_RS21210	SM00912	haemagglutination activity domain
CKY39_RS21225	SM00965	Secretin and TonB N terminus short domain
CKY39_RS21235	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS21300	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS21300	SM00448	cheY-homologous receiver domain
CKY39_RS21355	SM00858	CKY39_RS21355
CKY39_RS21385	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS21450	SM00344	helix_turn_helix ASNC type
CKY39_RS21530	SM00912	haemagglutination activity domain
CKY39_RS21545	SM00965	Secretin and TonB N terminus short domain
CKY39_RS21565	SM00226	Low molecular weight phosphatase family
CKY39_RS21625	SM00838	Elongation factor G C-terminus
CKY39_RS21625	SM00889	Elongation factor G, domain IV
CKY39_RS21635	SM00486	DNA polymerase type-B family
CKY39_RS21675	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS21690	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS21730	SM00984	UDP binding domain
CKY39_RS21775	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS21775	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS21850	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CKY39_RS21930	SM00344	helix_turn_helix ASNC type
CKY39_RS21940	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS21955	SM01007	Class II Aldolase and Adducin N-terminal domain
CKY39_RS21960	SM01130	CKY39_RS21960
CKY39_RS22020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS22020	SM00895	CKY39_RS22020
CKY39_RS22050	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CKY39_RS22125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS22125	SM00895	CKY39_RS22125
CKY39_RS22165	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS22215	SM00881	CoA binding domain
CKY39_RS22235	SM00895	CKY39_RS22235
CKY39_RS22235	SM00903	Flavin reductase like domain
CKY39_RS22290	SM00422	helix_turn_helix, mercury resistance
CKY39_RS22295	SM00411	bacterial (prokaryotic) histone like domain
CKY39_RS22300	SM00873	B3/4 domain
CKY39_RS22300	SM00874	tRNA synthetase B5 domain
CKY39_RS22300	SM00896	Ferredoxin-fold anticodon binding domain
CKY39_RS22325	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CKY39_RS22340	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS22360	SM00151	SWI complex, BAF60b domains
CKY39_RS22365	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS22445	SM00646	CKY39_RS22445
CKY39_RS22460	SM00422	helix_turn_helix, mercury resistance
CKY39_RS22520	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS22535	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS22545	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS22555	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS22555	SM00895	CKY39_RS22555
CKY39_RS22565	SM00858	CKY39_RS22565
CKY39_RS22595	SM00912	haemagglutination activity domain
CKY39_RS22660	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS22665	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS22705	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS22710	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS22765	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CKY39_RS22770	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CKY39_RS22815	SM00829	Enoylreductase
CKY39_RS22820	SM00316	Ribosomal protein S1-like RNA-binding domain
CKY39_RS22820	SM00322	K homology RNA-binding domain
CKY39_RS22825	SM01387	CKY39_RS22825
CKY39_RS22835	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS22865	SM01012	CKY39_RS22865
CKY39_RS22880	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS22885	SM01012	CKY39_RS22885
CKY39_RS22895	SM00220	Serine/Threonine protein kinases, catalytic domain
CKY39_RS22895	SM00331	Sigma factor PP2C-like phosphatases
CKY39_RS22895	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CKY39_RS22915	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CKY39_RS23010	SM00822	CKY39_RS23010
CKY39_RS23015	SM00829	Enoylreductase
CKY39_RS23020	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS23040	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS23055	SM00852	Probable molybdopterin binding domain
CKY39_RS23110	SM00448	cheY-homologous receiver domain
CKY39_RS23110	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS23115	SM00387	Histidine kinase-like ATPases
CKY39_RS23115	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS23135	SM00422	helix_turn_helix, mercury resistance
CKY39_RS23145	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS23155	SM00829	Enoylreductase
CKY39_RS23205	SM00344	helix_turn_helix ASNC type
CKY39_RS23245	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS23290	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS23300	SM00112	Cadherin repeats.
CKY39_RS23300	SM00327	von Willebrand factor (vWF) type A domain
CKY39_RS23305	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS23305	SM00448	cheY-homologous receiver domain
CKY39_RS23310	SM00387	Histidine kinase-like ATPases
CKY39_RS23310	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS23340	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CKY39_RS23340	SM00534	ATPase domain of DNA mismatch repair MUTS family
CKY39_RS23375	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS23375	SM00448	cheY-homologous receiver domain
CKY39_RS23380	SM00387	Histidine kinase-like ATPases
CKY39_RS23400	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS23420	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS23435	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS23435	SM00895	CKY39_RS23435
CKY39_RS23445	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS23500	SM00387	Histidine kinase-like ATPases
CKY39_RS23505	SM00448	cheY-homologous receiver domain
CKY39_RS23505	SM00850	LytTr DNA-binding domain
CKY39_RS23555	SM00850	LytTr DNA-binding domain
CKY39_RS23590	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS23615	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS23625	SM00422	helix_turn_helix, mercury resistance
CKY39_RS23635	SM00822	CKY39_RS23635
CKY39_RS23640	SM00448	cheY-homologous receiver domain
CKY39_RS23670	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CKY39_RS23690	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS23810	SM00878	Biotin carboxylase C-terminal domain
CKY39_RS23815	SM00796	Allophanate hydrolase subunit 1
CKY39_RS23820	SM00797	Allophanate hydrolase subunit 2
CKY39_RS23830	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS23880	SM00318	Staphylococcal nuclease homologues
CKY39_RS23885	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS23895	SM00822	CKY39_RS23895
CKY39_RS23905	SM00829	Enoylreductase
CKY39_RS23935	SM00965	Secretin and TonB N terminus short domain
CKY39_RS23955	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS23965	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
CKY39_RS23980	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS23980	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS23990	SM00822	CKY39_RS23990
CKY39_RS24005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS24005	SM00895	CKY39_RS24005
CKY39_RS24010	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS24025	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24115	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24120	SM00487	DEAD-like helicases superfamily
CKY39_RS24120	SM00490	helicase superfamily c-terminal domain
CKY39_RS24130	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CKY39_RS24150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS24150	SM00895	CKY39_RS24150
CKY39_RS24170	SM01007	Class II Aldolase and Adducin N-terminal domain
CKY39_RS24195	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS24215	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24340	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS24340	SM00478	endonuclease III
CKY39_RS24340	SM01009	AlkA N-terminal domain
CKY39_RS24415	SM00965	Secretin and TonB N terminus short domain
CKY39_RS24435	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24445	SM01006	Siderophore biosynthesis protein domain
CKY39_RS24460	SM00823	Phosphopantetheine attachment site
CKY39_RS24465	SM00823	Phosphopantetheine attachment site
CKY39_RS24470	SM00823	Phosphopantetheine attachment site
CKY39_RS24475	SM00822	CKY39_RS24475
CKY39_RS24475	SM00823	Phosphopantetheine attachment site
CKY39_RS24475	SM00825	Beta-ketoacyl synthase
CKY39_RS24475	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CKY39_RS24480	SM00823	Phosphopantetheine attachment site
CKY39_RS24490	SM00923	MbtH-like protein
CKY39_RS24525	SM00960	Roadblock/LC7 domain
CKY39_RS24540	SM00903	Flavin reductase like domain
CKY39_RS24555	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS24585	SM00387	Histidine kinase-like ATPases
CKY39_RS24585	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS24690	SM01207	CKY39_RS24690
CKY39_RS24750	SM00919	Malic enzyme, NAD binding domain
CKY39_RS24750	SM01274	CKY39_RS24750
CKY39_RS24770	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS24775	SM01130	CKY39_RS24775
CKY39_RS24800	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24830	SM00387	Histidine kinase-like ATPases
CKY39_RS24830	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS24835	SM00448	cheY-homologous receiver domain
CKY39_RS24835	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS24850	SM00387	Histidine kinase-like ATPases
CKY39_RS24850	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS24855	SM00448	cheY-homologous receiver domain
CKY39_RS24855	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS24885	SM00344	helix_turn_helix ASNC type
CKY39_RS24910	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24945	SM00507	HNH nucleases
CKY39_RS24955	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS24970	SM00507	HNH nucleases
CKY39_RS25000	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS25005	SM00822	CKY39_RS25005
CKY39_RS25020	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS25025	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS25115	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS25120	SM00829	Enoylreductase
CKY39_RS25145	SM00479	CKY39_RS25145
CKY39_RS25235	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS25270	SM00422	helix_turn_helix, mercury resistance
CKY39_RS25320	SM00487	DEAD-like helicases superfamily
CKY39_RS25320	SM00490	helicase superfamily c-terminal domain
CKY39_RS25385	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS25455	SM00344	helix_turn_helix ASNC type
CKY39_RS25490	SM00899	CKY39_RS25490
CKY39_RS25530	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS25595	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS25595	SM00866	CKY39_RS25595
CKY39_RS25645	SM01329	CKY39_RS25645
CKY39_RS25650	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CKY39_RS25695	SM00464	Found in ATP-dependent protease La (LON)
CKY39_RS25765	SM00358	Double-stranded RNA binding motif
CKY39_RS25765	SM00535	Ribonuclease III family
CKY39_RS25780	SM00838	Elongation factor G C-terminus
CKY39_RS25785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CKY39_RS25810	SM00825	Beta-ketoacyl synthase
CKY39_RS25815	SM00823	Phosphopantetheine attachment site
CKY39_RS25825	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CKY39_RS25880	SM00363	S4 RNA-binding domain
CKY39_RS25930	SM01068	Putative carbohydrate binding domain
CKY39_RS25985	SM00448	cheY-homologous receiver domain
CKY39_RS25985	SM00850	LytTr DNA-binding domain
CKY39_RS26010	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS26010	SM00448	cheY-homologous receiver domain
CKY39_RS26015	SM00091	PAS domain
CKY39_RS26015	SM00387	Histidine kinase-like ATPases
CKY39_RS26015	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS26105	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS26130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS26130	SM00895	CKY39_RS26130
CKY39_RS26165	SM01116	CKY39_RS26165
CKY39_RS26325	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CKY39_RS26340	SM00822	CKY39_RS26340
CKY39_RS26355	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CKY39_RS26425	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS26430	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CKY39_RS26440	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS26445	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS26460	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS26470	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS26470	SM00843	CKY39_RS26470
CKY39_RS26475	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS26475	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS26545	SM00507	HNH nucleases
CKY39_RS26550	SM00904	Riboflavin kinase
CKY39_RS26565	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS26585	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS26615	SM00448	cheY-homologous receiver domain
CKY39_RS26615	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS26635	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS26635	SM00387	Histidine kinase-like ATPases
CKY39_RS26635	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS26640	SM00448	cheY-homologous receiver domain
CKY39_RS26640	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS26645	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS26670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS26745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CKY39_RS26770	SM00448	cheY-homologous receiver domain
CKY39_RS26770	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS26775	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CKY39_RS26775	SM00091	PAS domain
CKY39_RS26775	SM00387	Histidine kinase-like ATPases
CKY39_RS26775	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS26775	SM00448	cheY-homologous receiver domain
CKY39_RS26780	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS26780	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS26795	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS26855	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS26880	SM01119	CKY39_RS26880
CKY39_RS26900	SM00965	Secretin and TonB N terminus short domain
CKY39_RS26920	SM00091	PAS domain
CKY39_RS26920	SM00267	diguanylate cyclase
CKY39_RS26930	SM00052	Putative diguanylate phosphodiesterase
CKY39_RS26935	SM00972	Spore Coat Protein U domain
CKY39_RS26950	SM00972	Spore Coat Protein U domain
CKY39_RS26980	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS27000	SM00829	Enoylreductase
CKY39_RS27005	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS27010	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS27035	SM00829	Enoylreductase
CKY39_RS27060	SM00257	Lysin motif
CKY39_RS27090	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS27100	SM00387	Histidine kinase-like ATPases
CKY39_RS27100	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS27100	SM00448	cheY-homologous receiver domain
CKY39_RS27105	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS27105	SM00448	cheY-homologous receiver domain
CKY39_RS27130	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27160	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS27175	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS27190	SM00331	Sigma factor PP2C-like phosphatases
CKY39_RS27190	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CKY39_RS27195	SM00220	Serine/Threonine protein kinases, catalytic domain
CKY39_RS27205	SM00072	Guanylate kinase homologues.
CKY39_RS27210	SM01409	CKY39_RS27210
CKY39_RS27215	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CKY39_RS27215	SM00954	Region found in RelA / SpoT proteins
CKY39_RS27225	SM00318	Staphylococcal nuclease homologues
CKY39_RS27235	SM00411	bacterial (prokaryotic) histone like domain
CKY39_RS27265	SM00857	Resolvase, N terminal domain
CKY39_RS27340	SM00478	endonuclease III
CKY39_RS27350	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CKY39_RS27350	SM01232	CKY39_RS27350
CKY39_RS27375	SM01400	CKY39_RS27375
CKY39_RS27410	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27415	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27450	SM00855	Phosphoglycerate mutase family
CKY39_RS27470	SM00797	Allophanate hydrolase subunit 2
CKY39_RS27475	SM00796	Allophanate hydrolase subunit 1
CKY39_RS27510	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27510	SM00962	SRP54-type protein, GTPase domain
CKY39_RS27510	SM00963	SRP54-type protein, helical bundle domain
CKY39_RS27525	SM00387	Histidine kinase-like ATPases
CKY39_RS27525	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS27525	SM00448	cheY-homologous receiver domain
CKY39_RS27530	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS27530	SM00448	cheY-homologous receiver domain
CKY39_RS27705	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS27745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS27745	SM00895	CKY39_RS27745
CKY39_RS27765	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS27770	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CKY39_RS27800	SM00244	prohibitin homologues
CKY39_RS27805	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27860	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CKY39_RS27860	SM00458	Ricin-type beta-trefoil
CKY39_RS27880	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27885	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27895	SM01119	CKY39_RS27895
CKY39_RS27915	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS27950	SM00869	Autotransporter beta-domain
CKY39_RS27970	SM00882	Coenzyme A transferase
CKY39_RS27975	SM00882	Coenzyme A transferase
CKY39_RS27980	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS27990	SM00028	Tetratricopeptide repeats
CKY39_RS28010	SM00858	CKY39_RS28010
CKY39_RS28040	SM00028	Tetratricopeptide repeats
CKY39_RS28065	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28080	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28130	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28195	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS28200	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28205	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28230	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS28235	SM00563	Phosphate acyltransferases
CKY39_RS28255	SM00732	Likely ribonuclease with RNase H fold.
CKY39_RS28285	SM00448	cheY-homologous receiver domain
CKY39_RS28290	SM00448	cheY-homologous receiver domain
CKY39_RS28330	SM00798	AICARFT/IMPCHase bienzyme
CKY39_RS28330	SM00851	MGS-like domain
CKY39_RS28380	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28390	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS28465	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28500	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CKY39_RS28560	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28560	SM00989	CKY39_RS28560
CKY39_RS28620	SM00881	CoA binding domain
CKY39_RS28640	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS28670	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS28720	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28725	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28760	SM00822	CKY39_RS28760
CKY39_RS28765	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS28810	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS28815	SM00869	Autotransporter beta-domain
CKY39_RS28895	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS28920	SM00563	Phosphate acyltransferases
CKY39_RS28935	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS28945	SM00881	CoA binding domain
CKY39_RS28965	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS28975	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS28995	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS29005	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CKY39_RS29110	SM00996	S-adenosyl-L-homocysteine hydrolase
CKY39_RS29110	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CKY39_RS29170	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS29205	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS29255	SM00331	Sigma factor PP2C-like phosphatases
CKY39_RS29255	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CKY39_RS29290	SM00346	helix_turn_helix isocitrate lyase regulation
CKY39_RS29315	SM00878	Biotin carboxylase C-terminal domain
CKY39_RS29345	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS29400	SM00947	Carbonic anhydrase
CKY39_RS29405	SM00422	helix_turn_helix, mercury resistance
CKY39_RS29410	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS29415	SM00364	Leucine-rich repeats, bacterial type
CKY39_RS29415	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CKY39_RS29440	SM00563	Phosphate acyltransferases
CKY39_RS29460	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CKY39_RS29470	SM00014	Acid phosphatase homologues
CKY39_RS29475	SM00870	CKY39_RS29475
CKY39_RS29490	SM01091	Transporter associated domain
CKY39_RS29500	SM00344	helix_turn_helix ASNC type
CKY39_RS29510	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS29525	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS29555	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS29560	SM00155	Phospholipase D. Active site motifs.
CKY39_RS29610	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS29670	SM00878	Biotin carboxylase C-terminal domain
CKY39_RS29735	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CKY39_RS29745	SM00344	helix_turn_helix ASNC type
CKY39_RS29750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS29750	SM00895	CKY39_RS29750
CKY39_RS29785	SM01130	CKY39_RS29785
CKY39_RS29810	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS29825	SM00749	bacterial OsmY and nodulation domain
CKY39_RS29950	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS29965	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30020	SM00729	Elongator protein 3, MiaB family, Radical SAM
CKY39_RS30110	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS30140	SM00829	Enoylreductase
CKY39_RS30160	SM00965	Secretin and TonB N terminus short domain
CKY39_RS30180	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CKY39_RS30190	SM00387	Histidine kinase-like ATPases
CKY39_RS30190	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS30195	SM00448	cheY-homologous receiver domain
CKY39_RS30195	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS30280	SM00322	K homology RNA-binding domain
CKY39_RS30295	SM01382	CKY39_RS30295
CKY39_RS30295	SM01383	CKY39_RS30295
CKY39_RS30325	SM01403	CKY39_RS30325
CKY39_RS30335	SM00838	Elongation factor G C-terminus
CKY39_RS30335	SM00889	Elongation factor G, domain IV
CKY39_RS30350	SM00936	Penicillin-binding protein 5, C-terminal domain 
CKY39_RS30375	SM01004	Delta-aminolevulinic acid dehydratase
CKY39_RS30405	SM00822	CKY39_RS30405
CKY39_RS30430	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30435	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30450	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS30485	SM00257	Lysin motif
CKY39_RS30490	SM00354	helix_turn _helix lactose operon repressor
CKY39_RS30495	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS30510	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30525	SM00450	Rhodanese Homology Domain
CKY39_RS30555	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CKY39_RS30560	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS30595	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30625	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CKY39_RS30650	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS30670	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS30755	SM00387	Histidine kinase-like ATPases
CKY39_RS30770	SM00829	Enoylreductase
CKY39_RS30785	SM00387	Histidine kinase-like ATPases
CKY39_RS30785	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS30790	SM00448	cheY-homologous receiver domain
CKY39_RS30790	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS30800	SM00363	S4 RNA-binding domain
CKY39_RS30825	SM00195	Dual specificity phosphatase, catalytic domain
CKY39_RS30830	SM00829	Enoylreductase
CKY39_RS30860	SM00448	cheY-homologous receiver domain
CKY39_RS30860	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS30960	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS30970	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CKY39_RS31035	SM00419	helix_turn_helix, cAMP Regulatory protein
CKY39_RS31045	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS31065	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS31095	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS31100	SM00564	beta-propeller repeat
CKY39_RS31130	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS31150	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS31155	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS31160	SM00822	CKY39_RS31160
CKY39_RS31190	SM00347	helix_turn_helix multiple antibiotic resistance protein
CKY39_RS31360	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS31420	SM00857	Resolvase, N terminal domain
CKY39_RS31435	SM00662	RNA polymerases D
CKY39_RS31440	SM00363	S4 RNA-binding domain
CKY39_RS31440	SM01390	CKY39_RS31440
CKY39_RS31505	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CKY39_RS31510	SM01374	CKY39_RS31510
CKY39_RS31585	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS31585	SM01086	C-terminal, D2-small domain, of ClpB protein
CKY39_RS31620	SM00028	Tetratricopeptide repeats
CKY39_RS31705	SM00878	Biotin carboxylase C-terminal domain
CKY39_RS31710	SM00796	Allophanate hydrolase subunit 1
CKY39_RS31710	SM00797	Allophanate hydrolase subunit 2
CKY39_RS31735	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS31735	SM00895	CKY39_RS31735
CKY39_RS31785	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS31800	SM00487	DEAD-like helicases superfamily
CKY39_RS31800	SM00490	helicase superfamily c-terminal domain
CKY39_RS31855	SM00563	Phosphate acyltransferases
CKY39_RS31865	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS31870	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CKY39_RS31895	SM00420	helix_turn_helix, Deoxyribose operon repressor
CKY39_RS31895	SM01134	CKY39_RS31895
CKY39_RS31935	SM00530	Helix-turn-helix XRE-family like proteins 
CKY39_RS31960	SM00344	helix_turn_helix ASNC type
CKY39_RS32005	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS32040	SM00257	Lysin motif
CKY39_RS32070	SM01323	CKY39_RS32070
CKY39_RS32080	SM00344	helix_turn_helix ASNC type
CKY39_RS32090	SM00960	Roadblock/LC7 domain
CKY39_RS32105	SM00062	Bacterial periplasmic substrate-binding proteins
CKY39_RS32105	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CKY39_RS32150	SM00869	Autotransporter beta-domain
CKY39_RS32160	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS32210	SM01007	Class II Aldolase and Adducin N-terminal domain
CKY39_RS32235	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS32235	SM00895	CKY39_RS32235
CKY39_RS32240	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS32245	SM00344	helix_turn_helix ASNC type
CKY39_RS32270	SM00342	helix_turn_helix, arabinose operon control protein
CKY39_RS32280	SM00421	helix_turn_helix, Lux Regulon
CKY39_RS32280	SM00448	cheY-homologous receiver domain
CKY39_RS32285	SM00091	PAS domain
CKY39_RS32285	SM00387	Histidine kinase-like ATPases
CKY39_RS32285	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS32350	SM01322	CKY39_RS32350
CKY39_RS32445	SM00849	Metallo-beta-lactamase superfamily
CKY39_RS32450	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CKY39_RS32450	SM01080	CKY39_RS32450
CKY39_RS32455	SM00240	Forkhead associated domain
CKY39_RS32460	SM00331	Sigma factor PP2C-like phosphatases
CKY39_RS32460	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CKY39_RS32470	SM00881	CoA binding domain
CKY39_RS32480	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CKY39_RS32515	SM00382	ATPases associated with a variety of cellular activities
CKY39_RS32525	SM00448	cheY-homologous receiver domain
CKY39_RS32525	SM00862	Transcriptional regulatory protein, C terminal
CKY39_RS32540	SM00387	Histidine kinase-like ATPases
CKY39_RS32540	SM00388	His Kinase A (phosphoacceptor) domain
CKY39_RS32560	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
CKY39_RS32565	SM00151	SWI complex, BAF60b domains
CKY39_RS32565	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CKY39_RS32565	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CKY39_RS32565	SM00493	CKY39_RS32565
CKY39_RS32630	SM00344	helix_turn_helix ASNC type
CKY39_RS32635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS32650	SM00487	DEAD-like helicases superfamily
CKY39_RS32650	SM00490	helicase superfamily c-terminal domain
CKY39_RS32675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CKY39_RS32675	SM00895	CKY39_RS32675
CKY39_RS32735	SM00880	CKY39_RS32735
CKY39_RS32735	SM01118	CKY39_RS32735
CKY39_RS32770	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CKY39_RS32775	SM00861	Transketolase, pyrimidine binding domain
CKY39_RS32795	SM01011	Aminopeptidase P, N-terminal domain
CKY39_RS32830	SM01359	CKY39_RS32830
CKY39_RS32830	SM01360	CKY39_RS32830
CKY39_RS32875	SM00919	Malic enzyme, NAD binding domain
CKY39_RS32875	SM01274	CKY39_RS32875
CKY39_RS32890	SM00650	Ribosomal RNA adenine dimethylases
CKY39_RS32975	SM00360	RNA recognition motif
CKY39_RS32995	SM00116	Domain in cystathionine beta-synthase and other proteins.
CKY39_RS33010	SM00100	Cyclic nucleotide-monophosphate binding domain
CKY39_RS33025	SM01234	CKY39_RS33025
