VAPA_RS00005	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
VAPA_RS00010	SM00480	DNA polymerase III beta subunit
VAPA_RS00015	SM00387	Histidine kinase-like ATPases
VAPA_RS00015	SM00433	TopoisomeraseII
VAPA_RS00060	SM00155	Phospholipase D. Active site motifs.
VAPA_RS00110	SM00327	von Willebrand factor (vWF) type A domain
VAPA_RS00110	SM00609	Vault protein Inter-alpha-Trypsin domain
VAPA_RS00130	SM00387	Histidine kinase-like ATPases
VAPA_RS00130	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS00135	SM00448	cheY-homologous receiver domain
VAPA_RS00135	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS00145	SM00422	helix_turn_helix, mercury resistance
VAPA_RS00165	SM00825	Beta-ketoacyl synthase
VAPA_RS00180	SM00448	cheY-homologous receiver domain
VAPA_RS00180	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS00185	SM00387	Histidine kinase-like ATPases
VAPA_RS00185	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS00215	SM01228	VAPA_RS00215
VAPA_RS00240	SM00470	ParB-like nuclease domain
VAPA_RS00270	SM01118	VAPA_RS00270
VAPA_RS00355	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS00400	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS00410	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00415	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00420	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00460	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS00535	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00595	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS00645	SM00986	Uracil DNA glycosylase superfamily
VAPA_RS00645	SM00987	UreE urease accessory protein, C-terminal domain 
VAPA_RS00670	SM00829	Enoylreductase
VAPA_RS00680	SM00822	VAPA_RS00680
VAPA_RS00690	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS00710	SM01012	VAPA_RS00710
VAPA_RS00720	SM00327	von Willebrand factor (vWF) type A domain
VAPA_RS00745	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00750	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00800	SM00903	Flavin reductase like domain
VAPA_RS00810	SM00155	Phospholipase D. Active site motifs.
VAPA_RS00820	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00825	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00850	SM01230	VAPA_RS00850
VAPA_RS00860	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS00860	SM00895	VAPA_RS00860
VAPA_RS00890	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00905	SM00341	Helicase and RNase D C-terminal
VAPA_RS00905	SM00487	DEAD-like helicases superfamily
VAPA_RS00905	SM00490	helicase superfamily c-terminal domain
VAPA_RS00905	SM00956	VAPA_RS00905
VAPA_RS00920	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS00925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS00925	SM00866	VAPA_RS00925
VAPA_RS00955	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS00960	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS00960	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
VAPA_RS01010	SM01018	B12 binding domain
VAPA_RS01075	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01080	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01100	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS01150	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01150	SM01086	C-terminal, D2-small domain, of ClpB protein
VAPA_RS01185	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS01185	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS01230	SM00219	Tyrosine kinase, catalytic domain
VAPA_RS01360	SM00938	Nitrogen regulatory protein P-II
VAPA_RS01415	SM01005	Alanine racemase, C-terminal domain
VAPA_RS01430	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS01480	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS01505	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01560	SM00448	cheY-homologous receiver domain
VAPA_RS01560	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS01575	SM00825	Beta-ketoacyl synthase
VAPA_RS01625	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01660	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS01670	SM00895	VAPA_RS01670
VAPA_RS01705	SM00845	GatB domain
VAPA_RS01760	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS01765	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS01805	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01855	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS01860	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS01870	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS01910	SM00360	RNA recognition motif
VAPA_RS01925	SM00487	DEAD-like helicases superfamily
VAPA_RS01925	SM00490	helicase superfamily c-terminal domain
VAPA_RS01930	SM00244	prohibitin homologues
VAPA_RS01950	SM00878	Biotin carboxylase C-terminal domain
VAPA_RS02000	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
VAPA_RS02025	SM00829	Enoylreductase
VAPA_RS02035	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02045	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS02120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS02120	SM00895	VAPA_RS02120
VAPA_RS02145	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02150	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02155	SM00822	VAPA_RS02155
VAPA_RS02160	SM00822	VAPA_RS02160
VAPA_RS02190	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02195	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02220	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
VAPA_RS02220	SM00458	Ricin-type beta-trefoil
VAPA_RS02225	SM01133	VAPA_RS02225
VAPA_RS02240	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS02260	SM00866	VAPA_RS02260
VAPA_RS02280	SM00387	Histidine kinase-like ATPases
VAPA_RS02325	SM00448	cheY-homologous receiver domain
VAPA_RS02325	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS02330	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
VAPA_RS02330	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
VAPA_RS02360	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02365	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02440	SM00344	helix_turn_helix ASNC type
VAPA_RS02460	SM00642	Alpha-amylase domain
VAPA_RS02465	SM00642	Alpha-amylase domain
VAPA_RS02470	SM00642	Alpha-amylase domain
VAPA_RS02530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS02530	SM00895	VAPA_RS02530
VAPA_RS02620	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
VAPA_RS02650	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS02695	SM00836	DALR anticodon binding domain
VAPA_RS02695	SM01016	Arginyl tRNA synthetase N terminal dom
VAPA_RS02715	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS02725	SM00155	Phospholipase D. Active site motifs.
VAPA_RS02735	SM00867	YceI-like domain 
VAPA_RS02740	SM00867	YceI-like domain 
VAPA_RS02750	SM00387	Histidine kinase-like ATPases
VAPA_RS02750	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS02750	SM00448	cheY-homologous receiver domain
VAPA_RS02755	SM00981	VAPA_RS02755
VAPA_RS02840	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS02880	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
VAPA_RS02890	SM00460	Transglutaminase/protease-like homologues
VAPA_RS02895	SM01060	VAPA_RS02895
VAPA_RS02910	SM00912	haemagglutination activity domain
VAPA_RS02920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS02920	SM00387	Histidine kinase-like ATPases
VAPA_RS02920	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS02920	SM00448	cheY-homologous receiver domain
VAPA_RS02930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS02930	SM00387	Histidine kinase-like ATPases
VAPA_RS02930	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS02930	SM00448	cheY-homologous receiver domain
VAPA_RS02965	SM00219	Tyrosine kinase, catalytic domain
VAPA_RS02970	SM00925	MltA specific insert domain
VAPA_RS03015	SM00028	Tetratricopeptide repeats
VAPA_RS03020	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS03020	SM01086	C-terminal, D2-small domain, of ClpB protein
VAPA_RS03085	SM00240	Forkhead associated domain
VAPA_RS03090	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS03090	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS03140	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS03140	SM00448	cheY-homologous receiver domain
VAPA_RS03165	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS03180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS03260	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS03285	SM00822	VAPA_RS03285
VAPA_RS03355	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS03360	SM00387	Histidine kinase-like ATPases
VAPA_RS03360	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS03365	SM00448	cheY-homologous receiver domain
VAPA_RS03365	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS03405	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS03410	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS03505	SM00903	Flavin reductase like domain
VAPA_RS03515	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS03570	SM00487	DEAD-like helicases superfamily
VAPA_RS03570	SM00490	helicase superfamily c-terminal domain
VAPA_RS03620	SM00986	Uracil DNA glycosylase superfamily
VAPA_RS03620	SM00987	UreE urease accessory protein, C-terminal domain 
VAPA_RS03655	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
VAPA_RS03655	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
VAPA_RS03660	SM00649	Ribosomal protein L11/L12
VAPA_RS03685	SM00663	RNA polymerase I subunit A N-terminus
VAPA_RS03705	SM00091	PAS domain
VAPA_RS03705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS03705	SM00387	Histidine kinase-like ATPases
VAPA_RS03705	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS03710	SM00448	cheY-homologous receiver domain
VAPA_RS03725	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS03730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS03750	SM00560	LamG-like jellyroll fold domain
VAPA_RS03790	SM00411	bacterial (prokaryotic) histone like domain
VAPA_RS03810	SM00091	PAS domain
VAPA_RS03810	SM00267	diguanylate cyclase
VAPA_RS03815	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
VAPA_RS03815	SM00091	PAS domain
VAPA_RS03815	SM00387	Histidine kinase-like ATPases
VAPA_RS03815	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS03815	SM00448	cheY-homologous receiver domain
VAPA_RS03855	SM00487	DEAD-like helicases superfamily
VAPA_RS03855	SM00490	helicase superfamily c-terminal domain
VAPA_RS03880	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
VAPA_RS03895	SM00829	Enoylreductase
VAPA_RS03945	SM00925	MltA specific insert domain
VAPA_RS04000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS04010	SM00897	FIST N domain
VAPA_RS04010	SM01204	VAPA_RS04010
VAPA_RS04080	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04170	SM00858	VAPA_RS04170
VAPA_RS04190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS04190	SM00895	VAPA_RS04190
VAPA_RS04210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS04210	SM00866	VAPA_RS04210
VAPA_RS04230	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04235	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04295	SM00822	VAPA_RS04295
VAPA_RS04365	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04390	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS04405	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04510	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04515	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04570	SM00945	ProQ/FINO family
VAPA_RS04575	SM00903	Flavin reductase like domain
VAPA_RS04590	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS04625	SM00363	S4 RNA-binding domain
VAPA_RS04630	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS04735	SM00833	Cobalamin synthesis protein cobW C-terminal domain
VAPA_RS04760	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04760	SM01086	C-terminal, D2-small domain, of ClpB protein
VAPA_RS04830	SM00842	Cell division protein FtsA
VAPA_RS04835	SM00864	Tubulin/FtsZ family, GTPase domain
VAPA_RS04835	SM00865	Tubulin/FtsZ family, C-terminal domain
VAPA_RS04865	SM00563	Phosphate acyltransferases
VAPA_RS04890	SM00955	VAPA_RS04890
VAPA_RS04900	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS04900	SM00448	cheY-homologous receiver domain
VAPA_RS04955	SM00878	Biotin carboxylase C-terminal domain
VAPA_RS04990	SM00644	VAPA_RS04990
VAPA_RS04995	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS04995	SM00448	cheY-homologous receiver domain
VAPA_RS05000	SM00387	Histidine kinase-like ATPases
VAPA_RS05000	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS05015	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05015	SM00962	SRP54-type protein, GTPase domain
VAPA_RS05015	SM00963	SRP54-type protein, helical bundle domain
VAPA_RS05035	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05035	SM00448	cheY-homologous receiver domain
VAPA_RS05045	SM00387	Histidine kinase-like ATPases
VAPA_RS05045	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS05050	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS05070	SM00855	Phosphoglycerate mutase family
VAPA_RS05085	SM00905	Dihydroneopterin aldolase
VAPA_RS05125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS05200	SM01034	Sensors of blue-light using FAD
VAPA_RS05205	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS05230	SM00344	helix_turn_helix ASNC type
VAPA_RS05245	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS05315	SM00861	Transketolase, pyrimidine binding domain
VAPA_RS05335	SM01329	VAPA_RS05335
VAPA_RS05365	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS05425	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05435	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05455	SM01130	VAPA_RS05455
VAPA_RS05465	SM00822	VAPA_RS05465
VAPA_RS05485	SM01209	VAPA_RS05485
VAPA_RS05495	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05515	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05555	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05660	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05665	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05695	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05755	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05765	SM00822	VAPA_RS05765
VAPA_RS05780	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS05795	SM00883	Chaperonin 10 Kd subunit
VAPA_RS05800	SM00155	Phospholipase D. Active site motifs.
VAPA_RS05830	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS05840	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS05840	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
VAPA_RS05845	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS05905	SM01219	VAPA_RS05905
VAPA_RS05915	SM00842	Cell division protein FtsA
VAPA_RS05935	SM00965	Secretin and TonB N terminus short domain
VAPA_RS05950	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
VAPA_RS05970	SM01321	VAPA_RS05970
VAPA_RS05985	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06015	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06075	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS06130	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
VAPA_RS06165	SM00226	Low molecular weight phosphatase family
VAPA_RS06275	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06305	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06310	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06315	SM01119	VAPA_RS06315
VAPA_RS06340	SM00903	Flavin reductase like domain
VAPA_RS06360	SM00014	Acid phosphatase homologues
VAPA_RS06380	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06385	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06450	SM00327	von Willebrand factor (vWF) type A domain
VAPA_RS06480	SM00986	Uracil DNA glycosylase superfamily
VAPA_RS06480	SM00987	UreE urease accessory protein, C-terminal domain 
VAPA_RS06490	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06535	SM00829	Enoylreductase
VAPA_RS06540	SM00448	cheY-homologous receiver domain
VAPA_RS06555	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06580	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS06595	SM00904	Riboflavin kinase
VAPA_RS06600	SM00507	HNH nucleases
VAPA_RS06670	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS06670	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS06675	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06675	SM00843	VAPA_RS06675
VAPA_RS06685	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06700	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06705	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06790	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
VAPA_RS06805	SM00822	VAPA_RS06805
VAPA_RS06820	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
VAPA_RS06965	SM00091	PAS domain
VAPA_RS06965	SM00387	Histidine kinase-like ATPases
VAPA_RS06970	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS06970	SM00448	cheY-homologous receiver domain
VAPA_RS06985	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS06990	SM01116	VAPA_RS06990
VAPA_RS06995	SM00822	VAPA_RS06995
VAPA_RS07000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS07035	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS07055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS07055	SM00895	VAPA_RS07055
VAPA_RS07090	SM00450	Rhodanese Homology Domain
VAPA_RS07120	SM00506	Appr-1"-p processing enzyme
VAPA_RS07130	SM01359	VAPA_RS07130
VAPA_RS07130	SM01360	VAPA_RS07130
VAPA_RS07185	SM00448	cheY-homologous receiver domain
VAPA_RS07185	SM00850	LytTr DNA-binding domain
VAPA_RS07230	SM01068	Putative carbohydrate binding domain
VAPA_RS07265	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS07270	SM00363	S4 RNA-binding domain
VAPA_RS07325	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
VAPA_RS07330	SM00822	VAPA_RS07330
VAPA_RS07335	SM00823	Phosphopantetheine attachment site
VAPA_RS07340	SM00825	Beta-ketoacyl synthase
VAPA_RS07365	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
VAPA_RS07370	SM00838	Elongation factor G C-terminus
VAPA_RS07385	SM00358	Double-stranded RNA binding motif
VAPA_RS07385	SM00535	Ribonuclease III family
VAPA_RS07430	SM00464	Found in ATP-dependent protease La (LON)
VAPA_RS07470	SM00859	Semialdehyde dehydrogenase, NAD binding domain
VAPA_RS07475	SM01329	VAPA_RS07475
VAPA_RS07530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS07530	SM00866	VAPA_RS07530
VAPA_RS07585	SM00899	VAPA_RS07585
VAPA_RS07680	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS07785	SM00479	VAPA_RS07785
VAPA_RS07790	SM00487	DEAD-like helicases superfamily
VAPA_RS07790	SM00490	helicase superfamily c-terminal domain
VAPA_RS07810	SM00829	Enoylreductase
VAPA_RS07815	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS07900	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS07905	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS07915	SM00822	VAPA_RS07915
VAPA_RS07920	SM00822	VAPA_RS07920
VAPA_RS07925	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS07970	SM00858	VAPA_RS07970
VAPA_RS08030	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS08030	SM00448	cheY-homologous receiver domain
VAPA_RS08050	SM01240	VAPA_RS08050
VAPA_RS08085	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
VAPA_RS08085	SM00474	3'-5' exonuclease
VAPA_RS08085	SM00475	5'-3' exonuclease
VAPA_RS08085	SM00482	DNA polymerase A domain
VAPA_RS08105	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS08135	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08140	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08170	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS08195	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08205	SM00450	Rhodanese Homology Domain
VAPA_RS08230	SM00861	Transketolase, pyrimidine binding domain
VAPA_RS08275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS08275	SM00895	VAPA_RS08275
VAPA_RS08295	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08300	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08320	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08345	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS08350	SM01092	CO dehydrogenase flavoprotein C-terminal domain
VAPA_RS08355	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08440	SM00411	bacterial (prokaryotic) histone like domain
VAPA_RS08445	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS08460	SM00830	Chorismate mutase type II
VAPA_RS08475	SM00434	DNA Topoisomerase IV
VAPA_RS08575	SM00852	Probable molybdopterin binding domain
VAPA_RS08580	SM01230	VAPA_RS08580
VAPA_RS08590	SM00387	Histidine kinase-like ATPases
VAPA_RS08590	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS08595	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08595	SM00448	cheY-homologous receiver domain
VAPA_RS08620	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS08625	SM00387	Histidine kinase-like ATPases
VAPA_RS08625	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS08625	SM00448	cheY-homologous receiver domain
VAPA_RS08725	SM00116	Domain in cystathionine beta-synthase and other proteins.
VAPA_RS08785	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS08795	SM01350	VAPA_RS08795
VAPA_RS08800	SM00474	3'-5' exonuclease
VAPA_RS08835	SM00829	Enoylreductase
VAPA_RS08870	SM00763	PrkA AAA domain
VAPA_RS08875	SM00271	DnaJ molecular chaperone homology domain
VAPA_RS08915	SM00822	VAPA_RS08915
VAPA_RS08920	SM00858	VAPA_RS08920
VAPA_RS08950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS08950	SM00895	VAPA_RS08950
VAPA_RS08960	SM01130	VAPA_RS08960
VAPA_RS08975	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
VAPA_RS09010	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09025	SM00155	Phospholipase D. Active site motifs.
VAPA_RS09040	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS09040	SM00895	VAPA_RS09040
VAPA_RS09060	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09065	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09080	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS09110	SM00116	Domain in cystathionine beta-synthase and other proteins.
VAPA_RS09125	SM00400	zinc finger
VAPA_RS09125	SM00493	VAPA_RS09125
VAPA_RS09205	SM00841	Elongation factor P, C-terminal
VAPA_RS09205	SM01185	VAPA_RS09205
VAPA_RS09215	SM00278	Helix-hairpin-helix DNA-binding motif class 1
VAPA_RS09215	SM00465	GIY-YIG type nucleases (URI domain)
VAPA_RS09240	SM01329	VAPA_RS09240
VAPA_RS09245	SM00411	bacterial (prokaryotic) histone like domain
VAPA_RS09260	SM00855	Phosphoglycerate mutase family
VAPA_RS09285	SM00528	Domain in histone-like proteins of HNS family
VAPA_RS09290	SM00829	Enoylreductase
VAPA_RS09305	SM00257	Lysin motif
VAPA_RS09410	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09420	SM00871	Bacterial transcription activator, effector binding domain
VAPA_RS09435	SM00670	Large family of predicted nucleotide-binding domains
VAPA_RS09470	SM00852	Probable molybdopterin binding domain
VAPA_RS09480	SM01130	VAPA_RS09480
VAPA_RS09495	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09495	SM01086	C-terminal, D2-small domain, of ClpB protein
VAPA_RS09510	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09530	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09575	SM00825	Beta-ketoacyl synthase
VAPA_RS09590	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS09640	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09675	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS09680	SM00151	SWI complex, BAF60b domains
VAPA_RS09700	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
VAPA_RS09725	SM00873	B3/4 domain
VAPA_RS09725	SM00874	tRNA synthetase B5 domain
VAPA_RS09725	SM00896	Ferredoxin-fold anticodon binding domain
VAPA_RS09730	SM00411	bacterial (prokaryotic) histone like domain
VAPA_RS09735	SM00422	helix_turn_helix, mercury resistance
VAPA_RS09780	SM00318	Staphylococcal nuclease homologues
VAPA_RS09805	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
VAPA_RS09820	SM00226	Low molecular weight phosphatase family
VAPA_RS09825	SM00226	Low molecular weight phosphatase family
VAPA_RS09855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS09855	SM00387	Histidine kinase-like ATPases
VAPA_RS09855	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS09860	SM00448	cheY-homologous receiver domain
VAPA_RS09860	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS09875	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS09945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS09945	SM00895	VAPA_RS09945
VAPA_RS09950	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS09955	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS09980	SM00829	Enoylreductase
VAPA_RS10005	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS10010	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS10020	SM00829	Enoylreductase
VAPA_RS10040	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS10085	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS10100	SM00881	CoA binding domain
VAPA_RS10130	SM00091	PAS domain
VAPA_RS10130	SM00387	Histidine kinase-like ATPases
VAPA_RS10150	SM00972	Spore Coat Protein U domain
VAPA_RS10165	SM00972	Spore Coat Protein U domain
VAPA_RS10200	SM00226	Low molecular weight phosphatase family
VAPA_RS10250	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS10265	SM00858	VAPA_RS10265
VAPA_RS10280	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS10300	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
VAPA_RS10310	SM00226	Low molecular weight phosphatase family
VAPA_RS10315	SM00226	Low molecular weight phosphatase family
VAPA_RS10335	SM00052	Putative diguanylate phosphodiesterase
VAPA_RS10345	SM00091	PAS domain
VAPA_RS10345	SM00267	diguanylate cyclase
VAPA_RS10385	SM00642	Alpha-amylase domain
VAPA_RS10390	SM00642	Alpha-amylase domain
VAPA_RS10395	SM00642	Alpha-amylase domain
VAPA_RS10405	SM00642	Alpha-amylase domain
VAPA_RS10410	SM00642	Alpha-amylase domain
VAPA_RS10415	SM00642	Alpha-amylase domain
VAPA_RS10425	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS10430	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS10445	SM00422	helix_turn_helix, mercury resistance
VAPA_RS10480	SM00116	Domain in cystathionine beta-synthase and other proteins.
VAPA_RS10515	SM00155	Phospholipase D. Active site motifs.
VAPA_RS10605	SM00822	VAPA_RS10605
VAPA_RS10630	SM00090	RIO-like kinase
VAPA_RS10680	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS10690	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS10695	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS10710	SM00344	helix_turn_helix ASNC type
VAPA_RS10720	SM00091	PAS domain
VAPA_RS10720	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS10740	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS10765	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS10775	SM00882	Coenzyme A transferase
VAPA_RS10790	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS10795	SM01130	VAPA_RS10795
VAPA_RS10800	SM01130	VAPA_RS10800
VAPA_RS10805	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS10825	SM00822	VAPA_RS10825
VAPA_RS10835	SM00829	Enoylreductase
VAPA_RS10840	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS10850	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS10870	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS10875	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS10890	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS10910	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS10910	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS10950	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS10960	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
VAPA_RS10960	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS10965	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS10970	SM01116	VAPA_RS10970
VAPA_RS10975	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS11005	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS11055	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS11070	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS11095	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS11120	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS11220	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS11245	SM00859	Semialdehyde dehydrogenase, NAD binding domain
VAPA_RS11260	SM00830	Chorismate mutase type II
VAPA_RS11285	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS11290	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS11290	SM00895	VAPA_RS11290
VAPA_RS11315	SM00878	Biotin carboxylase C-terminal domain
VAPA_RS11320	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS11320	SM00876	Biotin and Thiamin Synthesis associated domain
VAPA_RS11340	SM00344	helix_turn_helix ASNC type
VAPA_RS11370	SM00487	DEAD-like helicases superfamily
VAPA_RS11370	SM00490	helicase superfamily c-terminal domain
VAPA_RS11410	SM00479	VAPA_RS11410
VAPA_RS11510	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS11510	SM00448	cheY-homologous receiver domain
VAPA_RS11515	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
VAPA_RS11515	SM00091	PAS domain
VAPA_RS11515	SM00387	Histidine kinase-like ATPases
VAPA_RS11515	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS11575	SM00861	Transketolase, pyrimidine binding domain
VAPA_RS11600	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS11600	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS11610	SM00491	VAPA_RS11610
VAPA_RS11630	SM00363	S4 RNA-binding domain
VAPA_RS11635	SM00562	VAPA_RS11635
VAPA_RS11645	SM00028	Tetratricopeptide repeats
VAPA_RS11670	SM00564	beta-propeller repeat
VAPA_RS11690	SM00244	prohibitin homologues
VAPA_RS11695	SM00244	prohibitin homologues
VAPA_RS11710	SM00788	Adenylosuccinate synthetase
VAPA_RS11730	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS11750	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS11760	SM00967	RNA 2'-O ribose methyltransferase substrate binding
VAPA_RS11770	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS11805	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
VAPA_RS11835	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS11840	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS11845	SM00357	Cold shock protein domain
VAPA_RS11895	SM01119	VAPA_RS11895
VAPA_RS11915	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS11930	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS11940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS11940	SM00895	VAPA_RS11940
VAPA_RS12025	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS12040	SM00855	Phosphoglycerate mutase family
VAPA_RS12075	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12085	SM00448	cheY-homologous receiver domain
VAPA_RS12085	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS12090	SM00091	PAS domain
VAPA_RS12090	SM00387	Histidine kinase-like ATPases
VAPA_RS12090	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS12115	SM00357	Cold shock protein domain
VAPA_RS12115	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12115	SM00959	Rho termination factor, N-terminal domain
VAPA_RS12150	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12160	SM00493	VAPA_RS12160
VAPA_RS12175	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12190	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS12205	SM00852	Probable molybdopterin binding domain
VAPA_RS12215	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS12230	SM00155	Phospholipase D. Active site motifs.
VAPA_RS12305	SM00938	Nitrogen regulatory protein P-II
VAPA_RS12365	SM00917	LeuA allosteric (dimerisation) domain
VAPA_RS12370	SM00917	LeuA allosteric (dimerisation) domain
VAPA_RS12380	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS12395	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS12400	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS12420	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS12425	SM00448	cheY-homologous receiver domain
VAPA_RS12425	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS12430	SM00387	Histidine kinase-like ATPases
VAPA_RS12430	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS12435	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
VAPA_RS12580	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12645	SM00460	Transglutaminase/protease-like homologues
VAPA_RS12670	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS12685	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12760	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12790	SM00968	SMC proteins Flexible Hinge Domain
VAPA_RS12795	SM00771	ZipA, C-terminal domain (FtsZ-binding)
VAPA_RS12800	SM00278	Helix-hairpin-helix DNA-binding motif class 1
VAPA_RS12800	SM00292	breast cancer carboxy-terminal domain
VAPA_RS12800	SM00532	Ligase N family
VAPA_RS12815	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS12840	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
VAPA_RS12850	SM01211	VAPA_RS12850
VAPA_RS12880	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS12915	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12920	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS12950	SM00886	Stress responsive A/B Barrel Domain
VAPA_RS12965	SM00829	Enoylreductase
VAPA_RS13025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS13025	SM00895	VAPA_RS13025
VAPA_RS13110	SM00448	cheY-homologous receiver domain
VAPA_RS13110	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS13115	SM00387	Histidine kinase-like ATPases
VAPA_RS13115	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS13135	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS13155	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
VAPA_RS13160	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS13175	SM00829	Enoylreductase
VAPA_RS13180	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS13190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS13190	SM00895	VAPA_RS13190
VAPA_RS13195	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS13195	SM00732	Likely ribonuclease with RNase H fold.
VAPA_RS13290	SM00248	ankyrin repeats
VAPA_RS13335	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS13335	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS13340	SM00869	Autotransporter beta-domain
VAPA_RS13410	SM00749	bacterial OsmY and nodulation domain
VAPA_RS13425	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS13480	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS13510	SM00986	Uracil DNA glycosylase superfamily
VAPA_RS13510	SM00987	UreE urease accessory protein, C-terminal domain 
VAPA_RS13520	SM00488	VAPA_RS13520
VAPA_RS13520	SM00491	VAPA_RS13520
VAPA_RS13525	SM00387	Histidine kinase-like ATPases
VAPA_RS13525	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS13525	SM00448	cheY-homologous receiver domain
VAPA_RS13530	SM00138	Methyltransferase, chemotaxis proteins 
VAPA_RS13540	SM00387	Histidine kinase-like ATPases
VAPA_RS13540	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS13540	SM00448	cheY-homologous receiver domain
VAPA_RS13545	SM00448	cheY-homologous receiver domain
VAPA_RS13555	SM00240	Forkhead associated domain
VAPA_RS13585	SM00248	ankyrin repeats
VAPA_RS13595	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS13595	SM00448	cheY-homologous receiver domain
VAPA_RS13600	SM00387	Histidine kinase-like ATPases
VAPA_RS13600	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS13635	SM00833	Cobalamin synthesis protein cobW C-terminal domain
VAPA_RS13650	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS13700	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
VAPA_RS13705	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS13765	SM00116	Domain in cystathionine beta-synthase and other proteins.
VAPA_RS13765	SM01240	VAPA_RS13765
VAPA_RS13835	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS13835	SM00322	K homology RNA-binding domain
VAPA_RS13850	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS13890	SM00244	prohibitin homologues
VAPA_RS13905	SM00448	cheY-homologous receiver domain
VAPA_RS13955	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS13955	SM00487	DEAD-like helicases superfamily
VAPA_RS13955	SM00490	helicase superfamily c-terminal domain
VAPA_RS13955	SM00847	Helicase associated domain (HA2)  Add an annotation
VAPA_RS13960	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS13970	SM00829	Enoylreductase
VAPA_RS14005	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14045	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14050	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS14080	SM01209	VAPA_RS14080
VAPA_RS14080	SM01210	VAPA_RS14080
VAPA_RS14100	SM00563	Phosphate acyltransferases
VAPA_RS14110	SM00822	VAPA_RS14110
VAPA_RS14210	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14235	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS14235	SM00387	Histidine kinase-like ATPases
VAPA_RS14235	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS14240	SM00448	cheY-homologous receiver domain
VAPA_RS14240	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS14270	SM00155	Phospholipase D. Active site motifs.
VAPA_RS14275	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14275	SM01086	C-terminal, D2-small domain, of ClpB protein
VAPA_RS14285	SM01329	VAPA_RS14285
VAPA_RS14345	SM00870	VAPA_RS14345
VAPA_RS14380	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS14380	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS14410	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14420	SM01103	VAPA_RS14420
VAPA_RS14445	SM00851	MGS-like domain
VAPA_RS14445	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
VAPA_RS14455	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
VAPA_RS14490	SM00935	Outer membrane protein (OmpH-like)
VAPA_RS14555	SM00822	VAPA_RS14555
VAPA_RS14560	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS14560	SM00357	Cold shock protein domain
VAPA_RS14560	SM00955	VAPA_RS14560
VAPA_RS14585	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS14605	SM00954	Region found in RelA / SpoT proteins
VAPA_RS14615	SM00822	VAPA_RS14615
VAPA_RS14630	SM00448	cheY-homologous receiver domain
VAPA_RS14630	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS14635	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS14635	SM00387	Histidine kinase-like ATPases
VAPA_RS14635	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS14650	SM00487	DEAD-like helicases superfamily
VAPA_RS14650	SM00490	helicase superfamily c-terminal domain
VAPA_RS14650	SM00982	VAPA_RS14650
VAPA_RS14650	SM01058	CarD-like/TRCF domain
VAPA_RS14680	SM00478	endonuclease III
VAPA_RS14690	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS14695	SM00855	Phosphoglycerate mutase family
VAPA_RS14770	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14820	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS14855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS14855	SM00895	VAPA_RS14855
VAPA_RS14930	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14985	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14985	SM00464	Found in ATP-dependent protease La (LON)
VAPA_RS14990	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS14990	SM00994	ClpX C4-type zinc finger
VAPA_RS14990	SM01086	C-terminal, D2-small domain, of ClpB protein
VAPA_RS15080	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15085	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15090	SM00060	Fibronectin type 3 domain
VAPA_RS15105	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15150	SM00448	cheY-homologous receiver domain
VAPA_RS15150	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS15155	SM00387	Histidine kinase-like ATPases
VAPA_RS15155	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS15160	SM00363	S4 RNA-binding domain
VAPA_RS15175	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15190	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
VAPA_RS15195	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
VAPA_RS15195	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
VAPA_RS15220	SM00861	Transketolase, pyrimidine binding domain
VAPA_RS15250	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15255	SM00961	Ribulose bisphosphate carboxylase, small chain
VAPA_RS15295	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15300	SM00564	beta-propeller repeat
VAPA_RS15310	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS15335	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15350	SM00327	von Willebrand factor (vWF) type A domain
VAPA_RS15390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS15390	SM00387	Histidine kinase-like ATPases
VAPA_RS15395	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS15395	SM00448	cheY-homologous receiver domain
VAPA_RS15475	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15480	SM00905	Dihydroneopterin aldolase
VAPA_RS15560	SM00478	endonuclease III
VAPA_RS15565	SM00840	VAPA_RS15565
VAPA_RS15570	SM00028	Tetratricopeptide repeats
VAPA_RS15705	SM00481	DNA polymerase alpha chain like domain
VAPA_RS15710	SM00450	Rhodanese Homology Domain
VAPA_RS15715	SM00448	cheY-homologous receiver domain
VAPA_RS15715	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS15720	SM00387	Histidine kinase-like ATPases
VAPA_RS15720	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS15780	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS15780	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS15790	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS15810	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS15840	SM01217	VAPA_RS15840
VAPA_RS15865	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15905	SM00834	Putative regulatory protein
VAPA_RS15915	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15920	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS15940	SM00387	Histidine kinase-like ATPases
VAPA_RS15940	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS15940	SM00448	cheY-homologous receiver domain
VAPA_RS15945	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS15945	SM00448	cheY-homologous receiver domain
VAPA_RS15960	SM00387	Histidine kinase-like ATPases
VAPA_RS15960	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS15975	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS15985	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS16055	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS16070	SM00822	VAPA_RS16070
VAPA_RS16090	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
VAPA_RS16175	SM00823	Phosphopantetheine attachment site
VAPA_RS16175	SM00825	Beta-ketoacyl synthase
VAPA_RS16175	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
VAPA_RS16180	SM00823	Phosphopantetheine attachment site
VAPA_RS16250	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS16250	SM00448	cheY-homologous receiver domain
VAPA_RS16280	SM00481	DNA polymerase alpha chain like domain
VAPA_RS16325	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS16360	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS16395	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS16400	SM01092	CO dehydrogenase flavoprotein C-terminal domain
VAPA_RS16425	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS16440	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
VAPA_RS16460	SM00855	Phosphoglycerate mutase family
VAPA_RS16465	SM00271	DnaJ molecular chaperone homology domain
VAPA_RS16535	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS16605	SM00882	Coenzyme A transferase
VAPA_RS16610	SM00882	Coenzyme A transferase
VAPA_RS16615	SM00091	PAS domain
VAPA_RS16615	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS16685	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS16710	SM00014	Acid phosphatase homologues
VAPA_RS16720	SM00448	cheY-homologous receiver domain
VAPA_RS16720	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS16725	SM00387	Histidine kinase-like ATPases
VAPA_RS16725	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS16735	SM00822	VAPA_RS16735
VAPA_RS16830	SM01144	VAPA_RS16830
VAPA_RS16915	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS16925	SM00448	cheY-homologous receiver domain
VAPA_RS16925	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS16930	SM00387	Histidine kinase-like ATPases
VAPA_RS16930	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS16975	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17020	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
VAPA_RS17030	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
VAPA_RS17075	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17080	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17100	SM00893	Electron transfer flavoprotein domain
VAPA_RS17105	SM00893	Electron transfer flavoprotein domain
VAPA_RS17120	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17130	SM00460	Transglutaminase/protease-like homologues
VAPA_RS17150	SM00825	Beta-ketoacyl synthase
VAPA_RS17165	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17210	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17215	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17225	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS17225	SM00420	helix_turn_helix, Deoxyribose operon repressor
VAPA_RS17225	SM01134	VAPA_RS17225
VAPA_RS17240	SM00287	Bacterial SH3 domain homologues
VAPA_RS17260	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS17265	SM00460	Transglutaminase/protease-like homologues
VAPA_RS17275	SM00460	Transglutaminase/protease-like homologues
VAPA_RS17285	SM00091	PAS domain
VAPA_RS17285	SM00387	Histidine kinase-like ATPases
VAPA_RS17290	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS17290	SM00448	cheY-homologous receiver domain
VAPA_RS17345	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17355	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS17375	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17380	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS17380	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
VAPA_RS17420	SM00434	DNA Topoisomerase IV
VAPA_RS17425	SM00612	VAPA_RS17425
VAPA_RS17435	SM00387	Histidine kinase-like ATPases
VAPA_RS17435	SM00433	TopoisomeraseII
VAPA_RS17450	SM01130	VAPA_RS17450
VAPA_RS17460	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS17520	SM01192	VAPA_RS17520
VAPA_RS17520	SM01193	VAPA_RS17520
VAPA_RS17605	SM00646	VAPA_RS17605
VAPA_RS17625	SM00853	MutL C terminal dimerisation domain
VAPA_RS17625	SM01340	VAPA_RS17625
VAPA_RS17640	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS17650	SM00895	VAPA_RS17650
VAPA_RS17660	SM00858	VAPA_RS17660
VAPA_RS17725	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17730	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17755	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS17760	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17815	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
VAPA_RS17820	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
VAPA_RS17865	SM00829	Enoylreductase
VAPA_RS17870	SM00316	Ribosomal protein S1-like RNA-binding domain
VAPA_RS17870	SM00322	K homology RNA-binding domain
VAPA_RS17875	SM01387	VAPA_RS17875
VAPA_RS17905	SM01012	VAPA_RS17905
VAPA_RS17920	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS17925	SM01012	VAPA_RS17925
VAPA_RS17935	SM00220	Serine/Threonine protein kinases, catalytic domain
VAPA_RS17935	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS17935	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS17950	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
VAPA_RS17970	SM00965	Secretin and TonB N terminus short domain
VAPA_RS17975	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS18055	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS18080	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS18100	SM00852	Probable molybdopterin binding domain
VAPA_RS18130	SM00448	cheY-homologous receiver domain
VAPA_RS18130	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS18135	SM00387	Histidine kinase-like ATPases
VAPA_RS18135	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS18160	SM00422	helix_turn_helix, mercury resistance
VAPA_RS18190	SM00344	helix_turn_helix ASNC type
VAPA_RS18215	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS18240	SM00052	Putative diguanylate phosphodiesterase
VAPA_RS18240	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
VAPA_RS18240	SM00267	diguanylate cyclase
VAPA_RS18240	SM01079	VAPA_RS18240
VAPA_RS18265	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
VAPA_RS18290	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
VAPA_RS18290	SM00534	ATPase domain of DNA mismatch repair MUTS family
VAPA_RS18320	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS18340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS18345	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS18345	SM00448	cheY-homologous receiver domain
VAPA_RS18360	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS18375	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS18425	SM00387	Histidine kinase-like ATPases
VAPA_RS18430	SM00448	cheY-homologous receiver domain
VAPA_RS18430	SM00850	LytTr DNA-binding domain
VAPA_RS18465	SM00850	LytTr DNA-binding domain
VAPA_RS18500	SM00116	Domain in cystathionine beta-synthase and other proteins.
VAPA_RS18510	SM00422	helix_turn_helix, mercury resistance
VAPA_RS18520	SM00822	VAPA_RS18520
VAPA_RS18525	SM00448	cheY-homologous receiver domain
VAPA_RS18550	SM00833	Cobalamin synthesis protein cobW C-terminal domain
VAPA_RS18660	SM00318	Staphylococcal nuclease homologues
VAPA_RS18680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS18680	SM00895	VAPA_RS18680
VAPA_RS18685	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS18700	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS18770	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS18775	SM00487	DEAD-like helicases superfamily
VAPA_RS18775	SM00490	helicase superfamily c-terminal domain
VAPA_RS18795	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS18815	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS18815	SM00895	VAPA_RS18815
VAPA_RS18835	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS18860	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS18885	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS18990	SM00450	Rhodanese Homology Domain
VAPA_RS19010	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS19010	SM00478	endonuclease III
VAPA_RS19010	SM01009	AlkA N-terminal domain
VAPA_RS19060	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19075	SM01006	Siderophore biosynthesis protein domain
VAPA_RS19090	SM00823	Phosphopantetheine attachment site
VAPA_RS19090	SM00824	Thioesterase
VAPA_RS19095	SM00823	Phosphopantetheine attachment site
VAPA_RS19100	SM00823	Phosphopantetheine attachment site
VAPA_RS19100	SM01294	VAPA_RS19100
VAPA_RS19105	SM00822	VAPA_RS19105
VAPA_RS19105	SM00823	Phosphopantetheine attachment site
VAPA_RS19105	SM00825	Beta-ketoacyl synthase
VAPA_RS19105	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
VAPA_RS19110	SM00823	Phosphopantetheine attachment site
VAPA_RS19130	SM00923	MbtH-like protein
VAPA_RS19170	SM00014	Acid phosphatase homologues
VAPA_RS19265	SM01207	VAPA_RS19265
VAPA_RS19305	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19315	SM00937	VAPA_RS19315
VAPA_RS19365	SM01092	CO dehydrogenase flavoprotein C-terminal domain
VAPA_RS19370	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS19390	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
VAPA_RS19400	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
VAPA_RS19405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS19405	SM00866	VAPA_RS19405
VAPA_RS19410	SM00858	VAPA_RS19410
VAPA_RS19445	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS19460	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS19490	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS19505	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS19520	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS19540	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19545	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS19550	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS19580	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19585	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19610	SM00869	Autotransporter beta-domain
VAPA_RS19620	SM01091	Transporter associated domain
VAPA_RS19635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS19660	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS19670	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19685	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS19695	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS19715	SM00450	Rhodanese Homology Domain
VAPA_RS19725	SM00487	DEAD-like helicases superfamily
VAPA_RS19725	SM00490	helicase superfamily c-terminal domain
VAPA_RS19770	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS19800	SM00829	Enoylreductase
VAPA_RS19810	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS19865	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS19880	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
VAPA_RS19885	SM01092	CO dehydrogenase flavoprotein C-terminal domain
VAPA_RS19890	SM00923	MbtH-like protein
VAPA_RS19900	SM00823	Phosphopantetheine attachment site
VAPA_RS19960	SM00831	Cation transporter/ATPase, N-terminus
VAPA_RS20005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS20005	SM00895	VAPA_RS20005
VAPA_RS20025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS20025	SM00895	VAPA_RS20025
VAPA_RS20065	SM01130	VAPA_RS20065
VAPA_RS20075	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS20085	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
VAPA_RS20085	SM00508	Cysteine-rich motif following a subset of SET domains
VAPA_RS20090	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS20125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS20125	SM00895	VAPA_RS20125
VAPA_RS20160	SM00091	PAS domain
VAPA_RS20160	SM00387	Histidine kinase-like ATPases
VAPA_RS20160	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS20165	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS20165	SM00448	cheY-homologous receiver domain
VAPA_RS20190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS20190	SM00895	VAPA_RS20190
VAPA_RS20235	SM00919	Malic enzyme, NAD binding domain
VAPA_RS20235	SM01274	VAPA_RS20235
VAPA_RS20240	SM01130	VAPA_RS20240
VAPA_RS20265	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS20320	SM00344	helix_turn_helix ASNC type
VAPA_RS20375	SM00450	Rhodanese Homology Domain
VAPA_RS20470	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS20470	SM00448	cheY-homologous receiver domain
VAPA_RS20475	SM00387	Histidine kinase-like ATPases
VAPA_RS20475	SM01049	VAPA_RS20475
VAPA_RS20480	SM00450	Rhodanese Homology Domain
VAPA_RS20530	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS20535	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS20565	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS20585	SM00481	DNA polymerase alpha chain like domain
VAPA_RS20610	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS20610	SM00448	cheY-homologous receiver domain
VAPA_RS20615	SM00387	Histidine kinase-like ATPases
VAPA_RS20615	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS20675	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS20690	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS20735	SM00387	Histidine kinase-like ATPases
VAPA_RS20740	SM00448	cheY-homologous receiver domain
VAPA_RS20760	SM00822	VAPA_RS20760
VAPA_RS20815	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
VAPA_RS20845	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS20865	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
VAPA_RS20870	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
VAPA_RS20915	SM01329	VAPA_RS20915
VAPA_RS20925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS20925	SM00895	VAPA_RS20925
VAPA_RS21030	SM00450	Rhodanese Homology Domain
VAPA_RS21035	SM00855	Phosphoglycerate mutase family
VAPA_RS21040	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
VAPA_RS21040	SM00245	tail specific protease
VAPA_RS21055	SM00448	cheY-homologous receiver domain
VAPA_RS21060	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS21060	SM00448	cheY-homologous receiver domain
VAPA_RS21065	SM00387	Histidine kinase-like ATPases
VAPA_RS21095	SM00749	bacterial OsmY and nodulation domain
VAPA_RS21110	SM01034	Sensors of blue-light using FAD
VAPA_RS21140	SM00834	Putative regulatory protein
VAPA_RS21160	SM00978	VAPA_RS21160
VAPA_RS21205	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS21230	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS21230	SM00962	SRP54-type protein, GTPase domain
VAPA_RS21250	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS21255	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
VAPA_RS21255	SM00450	Rhodanese Homology Domain
VAPA_RS21280	SM00448	cheY-homologous receiver domain
VAPA_RS21285	SM00448	cheY-homologous receiver domain
VAPA_RS21295	SM00138	Methyltransferase, chemotaxis proteins 
VAPA_RS21305	SM00073	Histidine Phosphotransfer domain
VAPA_RS21305	SM00260	Two component signalling adaptor domain
VAPA_RS21305	SM00387	Histidine kinase-like ATPases
VAPA_RS21305	SM01231	VAPA_RS21305
VAPA_RS21385	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS21445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS21445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS21450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS21450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS21455	SM00260	Two component signalling adaptor domain
VAPA_RS21460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS21460	SM01049	VAPA_RS21460
VAPA_RS21465	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS21470	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
VAPA_RS21470	SM00091	PAS domain
VAPA_RS21470	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS21475	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS21475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS21480	SM00260	Two component signalling adaptor domain
VAPA_RS21485	SM00047	Lysozyme subfamily 2
VAPA_RS21530	SM00858	VAPA_RS21530
VAPA_RS21545	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS21545	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS21560	SM00937	VAPA_RS21560
VAPA_RS21580	SM01091	Transporter associated domain
VAPA_RS21605	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
VAPA_RS21635	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS21695	SM00957	SecA DEAD-like domain
VAPA_RS21695	SM00958	SecA preprotein cross-linking domain
VAPA_RS21730	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS21730	SM00448	cheY-homologous receiver domain
VAPA_RS21735	SM00387	Histidine kinase-like ATPases
VAPA_RS21735	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS21735	SM00448	cheY-homologous receiver domain
VAPA_RS21765	SM00966	SpoVT / AbrB like domain 
VAPA_RS21770	SM00988	UreE urease accessory protein, N-terminal domain
VAPA_RS21810	SM00448	cheY-homologous receiver domain
VAPA_RS21810	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS21825	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS21825	SM00387	Histidine kinase-like ATPases
VAPA_RS21825	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS21830	SM00448	cheY-homologous receiver domain
VAPA_RS21830	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS21865	SM00411	bacterial (prokaryotic) histone like domain
VAPA_RS22140	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS22155	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS22155	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS22160	SM00220	Serine/Threonine protein kinases, catalytic domain
VAPA_RS22170	SM00072	Guanylate kinase homologues.
VAPA_RS22175	SM01409	VAPA_RS22175
VAPA_RS22180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
VAPA_RS22180	SM00954	Region found in RelA / SpoT proteins
VAPA_RS22230	SM00478	endonuclease III
VAPA_RS22240	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
VAPA_RS22240	SM01232	VAPA_RS22240
VAPA_RS22245	SM00028	Tetratricopeptide repeats
VAPA_RS22265	SM01400	VAPA_RS22265
VAPA_RS22300	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22305	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22360	SM00855	Phosphoglycerate mutase family
VAPA_RS22385	SM00797	Allophanate hydrolase subunit 2
VAPA_RS22390	SM00796	Allophanate hydrolase subunit 1
VAPA_RS22425	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22425	SM00962	SRP54-type protein, GTPase domain
VAPA_RS22425	SM00963	SRP54-type protein, helical bundle domain
VAPA_RS22435	SM00387	Histidine kinase-like ATPases
VAPA_RS22435	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS22435	SM00448	cheY-homologous receiver domain
VAPA_RS22440	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS22440	SM00448	cheY-homologous receiver domain
VAPA_RS22585	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS22630	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS22635	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
VAPA_RS22655	SM00244	prohibitin homologues
VAPA_RS22660	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22690	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS22690	SM00387	Histidine kinase-like ATPases
VAPA_RS22690	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS22700	SM00448	cheY-homologous receiver domain
VAPA_RS22700	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS22715	SM00422	helix_turn_helix, mercury resistance
VAPA_RS22730	SM00882	Coenzyme A transferase
VAPA_RS22735	SM00882	Coenzyme A transferase
VAPA_RS22740	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS22750	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS22755	SM00028	Tetratricopeptide repeats
VAPA_RS22770	SM00858	VAPA_RS22770
VAPA_RS22800	SM00028	Tetratricopeptide repeats
VAPA_RS22820	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22835	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22885	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS22955	SM00881	CoA binding domain
VAPA_RS22975	SM00091	PAS domain
VAPA_RS22990	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS22995	SM00749	bacterial OsmY and nodulation domain
VAPA_RS23040	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23045	SM00567	E-Z type HEAT repeats
VAPA_RS23055	SM00327	von Willebrand factor (vWF) type A domain
VAPA_RS23155	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23170	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS23170	SM00448	cheY-homologous receiver domain
VAPA_RS23175	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS23175	SM00448	cheY-homologous receiver domain
VAPA_RS23180	SM00448	cheY-homologous receiver domain
VAPA_RS23180	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS23185	SM00387	Histidine kinase-like ATPases
VAPA_RS23185	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS23230	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS23235	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS23245	SM00487	DEAD-like helicases superfamily
VAPA_RS23245	SM00490	helicase superfamily c-terminal domain
VAPA_RS23270	SM00966	SpoVT / AbrB like domain 
VAPA_RS23305	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23310	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS23320	SM00563	Phosphate acyltransferases
VAPA_RS23340	SM00732	Likely ribonuclease with RNase H fold.
VAPA_RS23360	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS23365	SM00073	Histidine Phosphotransfer domain
VAPA_RS23365	SM00260	Two component signalling adaptor domain
VAPA_RS23365	SM00387	Histidine kinase-like ATPases
VAPA_RS23365	SM00448	cheY-homologous receiver domain
VAPA_RS23365	SM01231	VAPA_RS23365
VAPA_RS23370	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
VAPA_RS23380	SM00448	cheY-homologous receiver domain
VAPA_RS23385	SM00448	cheY-homologous receiver domain
VAPA_RS23420	SM00798	AICARFT/IMPCHase bienzyme
VAPA_RS23420	SM00851	MGS-like domain
VAPA_RS23455	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23465	SM00354	helix_turn _helix lactose operon repressor
VAPA_RS23525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS23555	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23580	SM00563	Phosphate acyltransferases
VAPA_RS23595	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS23605	SM00881	CoA binding domain
VAPA_RS23635	SM00278	Helix-hairpin-helix DNA-binding motif class 1
VAPA_RS23670	SM00363	S4 RNA-binding domain
VAPA_RS23725	SM00996	S-adenosyl-L-homocysteine hydrolase
VAPA_RS23725	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
VAPA_RS23745	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS23765	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS23800	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23830	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS23895	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS23910	SM00878	Biotin carboxylase C-terminal domain
VAPA_RS23940	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS23965	SM00369	Leucine-rich repeats, typical (most populated) subfamily
VAPA_RS23970	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS23975	SM00422	helix_turn_helix, mercury resistance
VAPA_RS23980	SM00947	Carbonic anhydrase
VAPA_RS24020	SM00563	Phosphate acyltransferases
VAPA_RS24040	SM00046	Diacylglycerol kinase catalytic domain (presumed)
VAPA_RS24050	SM00014	Acid phosphatase homologues
VAPA_RS24055	SM00870	VAPA_RS24055
VAPA_RS24070	SM00947	Carbonic anhydrase
VAPA_RS24120	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24140	SM01091	Transporter associated domain
VAPA_RS24150	SM00344	helix_turn_helix ASNC type
VAPA_RS24160	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS24175	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS24230	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24235	SM00155	Phospholipase D. Active site motifs.
VAPA_RS24285	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS24335	SM00878	Biotin carboxylase C-terminal domain
VAPA_RS24400	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS24415	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
VAPA_RS24435	SM00344	helix_turn_helix ASNC type
VAPA_RS24460	SM00749	bacterial OsmY and nodulation domain
VAPA_RS24480	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS24610	SM00903	Flavin reductase like domain
VAPA_RS24635	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24665	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24710	SM00487	DEAD-like helicases superfamily
VAPA_RS24710	SM00490	helicase superfamily c-terminal domain
VAPA_RS24750	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24770	SM00014	Acid phosphatase homologues
VAPA_RS24790	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24810	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS24865	SM00729	Elongator protein 3, MiaB family, Radical SAM
VAPA_RS24890	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS24905	SM00829	Enoylreductase
VAPA_RS24910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
VAPA_RS24910	SM00387	Histidine kinase-like ATPases
VAPA_RS24910	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS24915	SM00448	cheY-homologous receiver domain
VAPA_RS24915	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS24990	SM00322	K homology RNA-binding domain
VAPA_RS25005	SM01382	VAPA_RS25005
VAPA_RS25005	SM01383	VAPA_RS25005
VAPA_RS25035	SM01403	VAPA_RS25035
VAPA_RS25045	SM00838	Elongation factor G C-terminus
VAPA_RS25045	SM00889	Elongation factor G, domain IV
VAPA_RS25060	SM00936	Penicillin-binding protein 5, C-terminal domain 
VAPA_RS25085	SM01004	Delta-aminolevulinic acid dehydratase
VAPA_RS25115	SM00822	VAPA_RS25115
VAPA_RS25140	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25145	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25160	SM00342	helix_turn_helix, arabinose operon control protein
VAPA_RS25195	SM00257	Lysin motif
VAPA_RS25200	SM00450	Rhodanese Homology Domain
VAPA_RS25250	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
VAPA_RS25315	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25325	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS25375	SM00387	Histidine kinase-like ATPases
VAPA_RS25390	SM00829	Enoylreductase
VAPA_RS25405	SM00387	Histidine kinase-like ATPases
VAPA_RS25405	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS25410	SM00448	cheY-homologous receiver domain
VAPA_RS25410	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS25420	SM00363	S4 RNA-binding domain
VAPA_RS25435	SM00195	Dual specificity phosphatase, catalytic domain
VAPA_RS25440	SM00829	Enoylreductase
VAPA_RS25445	SM00448	cheY-homologous receiver domain
VAPA_RS25445	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS25450	SM00387	Histidine kinase-like ATPases
VAPA_RS25450	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS25495	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS25515	SM00419	helix_turn_helix, cAMP Regulatory protein
VAPA_RS25525	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25545	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25590	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS25595	SM00564	beta-propeller repeat
VAPA_RS25605	SM00564	beta-propeller repeat
VAPA_RS25615	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS25635	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS25660	SM00861	Transketolase, pyrimidine binding domain
VAPA_RS25665	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS25670	SM00822	VAPA_RS25670
VAPA_RS25700	SM00347	helix_turn_helix multiple antibiotic resistance protein
VAPA_RS25735	SM00662	RNA polymerases D
VAPA_RS25740	SM00363	S4 RNA-binding domain
VAPA_RS25740	SM01390	VAPA_RS25740
VAPA_RS25800	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
VAPA_RS25805	SM01374	VAPA_RS25805
VAPA_RS25840	SM00487	DEAD-like helicases superfamily
VAPA_RS25840	SM00490	helicase superfamily c-terminal domain
VAPA_RS25895	SM00563	Phosphate acyltransferases
VAPA_RS25905	SM00530	Helix-turn-helix XRE-family like proteins 
VAPA_RS25910	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
VAPA_RS25915	SM00986	Uracil DNA glycosylase superfamily
VAPA_RS25915	SM00987	UreE urease accessory protein, C-terminal domain 
VAPA_RS25935	SM00420	helix_turn_helix, Deoxyribose operon repressor
VAPA_RS25935	SM01134	VAPA_RS25935
VAPA_RS25965	SM01001	AIR carboxylase
VAPA_RS25990	SM00344	helix_turn_helix ASNC type
VAPA_RS26035	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS26070	SM00257	Lysin motif
VAPA_RS26100	SM01323	VAPA_RS26100
VAPA_RS26110	SM00344	helix_turn_helix ASNC type
VAPA_RS26115	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS26115	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
VAPA_RS26165	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS26215	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS26240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS26240	SM00895	VAPA_RS26240
VAPA_RS26250	SM00344	helix_turn_helix ASNC type
VAPA_RS26260	SM00925	MltA specific insert domain
VAPA_RS26275	SM00421	helix_turn_helix, Lux Regulon
VAPA_RS26275	SM00448	cheY-homologous receiver domain
VAPA_RS26280	SM00091	PAS domain
VAPA_RS26280	SM00387	Histidine kinase-like ATPases
VAPA_RS26280	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS26350	SM01322	VAPA_RS26350
VAPA_RS26470	SM00984	UDP binding domain
VAPA_RS26485	SM00849	Metallo-beta-lactamase superfamily
VAPA_RS26490	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
VAPA_RS26490	SM01080	VAPA_RS26490
VAPA_RS26495	SM00240	Forkhead associated domain
VAPA_RS26500	SM00331	Sigma factor PP2C-like phosphatases
VAPA_RS26500	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
VAPA_RS26510	SM00881	CoA binding domain
VAPA_RS26520	SM00859	Semialdehyde dehydrogenase, NAD binding domain
VAPA_RS26530	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS26540	SM00448	cheY-homologous receiver domain
VAPA_RS26540	SM00862	Transcriptional regulatory protein, C terminal
VAPA_RS26545	SM00387	Histidine kinase-like ATPases
VAPA_RS26545	SM00388	His Kinase A (phosphoacceptor) domain
VAPA_RS26560	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
VAPA_RS26565	SM00151	SWI complex, BAF60b domains
VAPA_RS26565	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
VAPA_RS26565	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
VAPA_RS26565	SM00493	VAPA_RS26565
VAPA_RS26605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS26625	SM00487	DEAD-like helicases superfamily
VAPA_RS26625	SM00490	helicase superfamily c-terminal domain
VAPA_RS26640	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS26640	SM00895	VAPA_RS26640
VAPA_RS26670	SM01130	VAPA_RS26670
VAPA_RS26700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS26700	SM00895	VAPA_RS26700
VAPA_RS26725	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS26745	SM01007	Class II Aldolase and Adducin N-terminal domain
VAPA_RS26765	SM00345	helix_turn_helix gluconate operon transcriptional repressor
VAPA_RS26765	SM00895	VAPA_RS26765
VAPA_RS26780	SM00062	Bacterial periplasmic substrate-binding proteins
VAPA_RS26790	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS26800	SM00880	VAPA_RS26800
VAPA_RS26800	SM01118	VAPA_RS26800
VAPA_RS26855	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
VAPA_RS26860	SM00861	Transketolase, pyrimidine binding domain
VAPA_RS26875	SM01011	Aminopeptidase P, N-terminal domain
VAPA_RS26915	SM00919	Malic enzyme, NAD binding domain
VAPA_RS26915	SM01274	VAPA_RS26915
VAPA_RS26930	SM00650	Ribosomal RNA adenine dimethylases
VAPA_RS27015	SM00360	RNA recognition motif
VAPA_RS27035	SM00116	Domain in cystathionine beta-synthase and other proteins.
VAPA_RS27050	SM00100	Cyclic nucleotide-monophosphate binding domain
VAPA_RS27065	SM01234	VAPA_RS27065
VAPA_RS27510	SM00382	ATPases associated with a variety of cellular activities
VAPA_RS28095	SM00346	helix_turn_helix isocitrate lyase regulation
VAPA_RS29140	SM00878	Biotin carboxylase C-terminal domain
VAPA_RS30915	SM00663	RNA polymerase I subunit A N-terminus
VAPA_RS31175	SM00829	Enoylreductase
VAPA_RS33570	SM00235	Zinc-dependent metalloprotease
VAPA_RS33630	SM00112	Cadherin repeats.
VAPA_RS33630	SM00327	von Willebrand factor (vWF) type A domain
VAPA_RS33705	SM00382	ATPases associated with a variety of cellular activities
