locus-tag	class	description
GJQ55_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GJQ55_RS00010	COG0592	DNA-directed DNA polymerase activity
GJQ55_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
GJQ55_RS00035	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
GJQ55_RS00040	COG0751	glycine-tRNA ligase activity
GJQ55_RS00045	COG0752	glycyl-tRNA synthetase alpha subunit
GJQ55_RS00060	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS00065	COG1560	Kdo2-lipid A biosynthetic process
GJQ55_RS00075	COG0589	response to stress
GJQ55_RS00080	COG0659	secondary active sulfate transmembrane transporter activity
GJQ55_RS00085	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
GJQ55_RS00090	COG0569	domain protein
GJQ55_RS00100	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
GJQ55_RS00105	COG0242	peptide deformylase activity
GJQ55_RS00115	COG0758	DNA mediated transformation
GJQ55_RS00120	COG0009	L-threonylcarbamoyladenylate synthase
GJQ55_RS00125	COG0408	coproporphyrinogen oxidase activity
GJQ55_RS00130	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
GJQ55_RS00155	COG0217	transcriptional regulatory protein
GJQ55_RS00170	COG3609	addiction module antidote protein, CC2985 family
GJQ55_RS00180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
GJQ55_RS00185	COG0339	signal peptide processing
GJQ55_RS00210	COG0579	oxidoreductase
GJQ55_RS00230	COG2353	YceI-like domain
GJQ55_RS00235	COG3038	cytochrome b561
GJQ55_RS00240	COG0583	DNA-binding transcription factor activity
GJQ55_RS00250	COG1404	Belongs to the peptidase S8 family
GJQ55_RS00320	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GJQ55_RS00325	COG1349	DNA-binding transcription factor activity
GJQ55_RS00340	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GJQ55_RS00355	COG0218	Necessary for normal cell division and for the maintenance of normal septation
GJQ55_RS00360	COG1108	ABC-type Mn2 Zn2 transport systems permease components
GJQ55_RS00365	COG1121	(ABC) transporter
GJQ55_RS00370	COG0735	belongs to the Fur family
GJQ55_RS00375	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
GJQ55_RS00380	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
GJQ55_RS00385	COG1346	cytolysis
GJQ55_RS00390	COG1380	Effector of murein hydrolase LrgA
GJQ55_RS00400	COG0628	permease
GJQ55_RS00405	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS00415	COG0281	malic enzyme
GJQ55_RS00425	COG1217	gtp-binding protein TYPA
GJQ55_RS00445	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GJQ55_RS00470	COG0006	proline dipeptidase activity
GJQ55_RS00475	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GJQ55_RS00480	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GJQ55_RS00485	COG1607	acyl-coa hydrolase
GJQ55_RS00505	COG0573	inorganic phosphate transmembrane transporter activity
GJQ55_RS00510	COG0581	inorganic phosphate transmembrane transporter activity
GJQ55_RS00515	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
GJQ55_RS00530	COG5002	protein histidine kinase activity
GJQ55_RS00555	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GJQ55_RS00580	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
GJQ55_RS00585	COG3161	chorismate lyase activity
GJQ55_RS00615	COG1301	dicarboxylic acid transport
GJQ55_RS00640	COG2132	Multicopper oxidase
GJQ55_RS00660	COG2050	protein possibly involved in aromatic compounds catabolism
GJQ55_RS00670	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
GJQ55_RS00675	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
GJQ55_RS00680	COG0204	Acyl-transferase
GJQ55_RS00685	COG2840	Smr protein MutS2
GJQ55_RS00700	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_RS00710	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJQ55_RS00715	COG2813	Specifically methylates the guanine in position
GJQ55_RS00715	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJQ55_RS00725	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
GJQ55_RS00730	COG0635	Involved in the biosynthesis of porphyrin-containing compound
GJQ55_RS00735	COG3642	lipopolysaccharide core region biosynthetic process
GJQ55_RS00740	COG0859	PFAM glycosyl transferase family 9
GJQ55_RS00750	COG0527	aspartate kinase activity
GJQ55_RS00755	COG1917	Cupin 2, conserved barrel domain protein
GJQ55_RS00785	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GJQ55_RS00790	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GJQ55_RS00795	COG0140	phosphoribosyl-ATP diphosphatase activity
GJQ55_RS00800	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
GJQ55_RS00805	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
GJQ55_RS00830	COG1073	alpha beta
GJQ55_RS00835	COG0659	secondary active sulfate transmembrane transporter activity
GJQ55_RS00840	COG1872	DUF167
GJQ55_RS00880	COG3639	organic phosphonate transmembrane transporter activity
GJQ55_RS00885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GJQ55_RS00890	COG0842	Transport permease protein
GJQ55_RS00890	COG1129	ABC transporter
GJQ55_RS00895	COG0842	Transport permease protein
GJQ55_RS00900	COG0348	domain, Protein
GJQ55_RS00900	COG3901	Regulator of nitric oxide reductase transcription
GJQ55_RS00905	COG4263	nitrous-oxide reductase activity
GJQ55_RS00920	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
GJQ55_RS00930	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GJQ55_RS00940	COG1012	belongs to the aldehyde dehydrogenase family
GJQ55_RS00950	COG0604	alcohol dehydrogenase
GJQ55_RS00970	COG1283	sodium-dependent phosphate transmembrane transporter activity
GJQ55_RS00975	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
GJQ55_RS00980	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
GJQ55_RS00980	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
GJQ55_RS00985	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
GJQ55_RS01010	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GJQ55_RS01030	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
GJQ55_RS01035	COG0081	regulation of translation
GJQ55_RS01040	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
GJQ55_RS01045	COG0222	ribosome binding
GJQ55_RS01050	COG0085	RNA polymerase activity
GJQ55_RS01060	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
GJQ55_RS01065	COG0049	tRNA binding
GJQ55_RS01070	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GJQ55_RS01075	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GJQ55_RS01080	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GJQ55_RS01085	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GJQ55_RS01090	COG0051	transcription antitermination factor activity, RNA binding
GJQ55_RS01095	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
GJQ55_RS01100	COG0088	Forms part of the polypeptide exit tunnel
GJQ55_RS01105	COG0089	rRNA binding
GJQ55_RS01110	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
GJQ55_RS01115	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GJQ55_RS01120	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
GJQ55_RS01125	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
GJQ55_RS01135	COG0255	Belongs to the universal ribosomal protein uL29 family
GJQ55_RS01140	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GJQ55_RS01145	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
GJQ55_RS01150	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
GJQ55_RS01155	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
GJQ55_RS01160	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GJQ55_RS01165	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
GJQ55_RS01170	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
GJQ55_RS01175	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
GJQ55_RS01180	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GJQ55_RS01185	COG1841	ribosomal large subunit assembly
GJQ55_RS01190	COG0200	Binds to the 23S rRNA
GJQ55_RS01200	COG0257	Belongs to the bacterial ribosomal protein bL36 family
GJQ55_RS01205	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
GJQ55_RS01210	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GJQ55_RS01215	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
GJQ55_RS01220	COG0202	RNA polymerase activity
GJQ55_RS01225	COG0203	ribosomal protein L17
GJQ55_RS01250	COG2771	luxR family
GJQ55_RS01250	COG2200	EAL domain
GJQ55_RS01255	COG2204	response regulator
GJQ55_RS01265	COG1294	oxidase, subunit
GJQ55_RS01270	COG4890	Cyd operon protein YbgT
GJQ55_RS01275	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_RS01290	COG2111	Na H antiporter
GJQ55_RS01290	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
GJQ55_RS01300	COG0651	ATP synthesis coupled electron transport
GJQ55_RS01305	COG1863	multisubunit Na H antiporter MnhE subunit
GJQ55_RS01310	COG2212	antiporter activity
GJQ55_RS01315	COG1320	monovalent cation:proton antiporter activity
GJQ55_RS01325	COG2873	o-acetylhomoserine
GJQ55_RS01340	COG1385	rRNA (uridine-N3-)-methyltransferase activity
GJQ55_RS01350	COG1360	Flagellar Motor Protein
GJQ55_RS01355	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GJQ55_RS01360	COG1722	exodeoxyribonuclease VII activity
GJQ55_RS01365	COG0142	geranyltranstransferase activity
GJQ55_RS01375	COG3852	Histidine kinase
GJQ55_RS01380	COG2204	response regulator
GJQ55_RS01385	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
GJQ55_RS01390	COG2738	Putative neutral zinc metallopeptidase
GJQ55_RS01405	COG0798	PFAM Bile acid sodium symporter
GJQ55_RS01410	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GJQ55_RS01420	COG1064	alcohol dehydrogenase
GJQ55_RS01445	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS01465	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
GJQ55_RS01485	COG4181	ATPase activity
GJQ55_RS01490	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
GJQ55_RS01495	COG0523	cobalamin synthesis protein
GJQ55_RS01505	COG1597	lipid kinase activity
GJQ55_RS01540	COG2267	carboxylic ester hydrolase activity
GJQ55_RS01555	COG1238	metal cluster binding
GJQ55_RS01565	COG1187	pseudouridine synthase activity
GJQ55_RS01620	COG2267	carboxylic ester hydrolase activity
GJQ55_RS01635	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GJQ55_RS01650	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
GJQ55_RS01660	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
GJQ55_RS01675	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GJQ55_RS01675	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GJQ55_RS01680	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
GJQ55_RS01690	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
GJQ55_RS01700	COG0488	(ABC) transporter
GJQ55_RS01710	COG0179	Fumarylacetoacetate (FAA) hydrolase
GJQ55_RS01715	COG0629	single-stranded DNA binding
GJQ55_RS01720	COG2814	Major facilitator Superfamily
GJQ55_RS01760	COG0560	Phosphoserine phosphatase
GJQ55_RS01760	COG3830	Belongs to the UPF0237 family
GJQ55_RS01775	COG0688	phosphatidylethanolamine metabolic process
GJQ55_RS01795	COG1360	Flagellar Motor Protein
GJQ55_RS01800	COG1162	GTPase activity
GJQ55_RS01820	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
GJQ55_RS01820	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
GJQ55_RS01825	COG0802	atpase or kinase
GJQ55_RS01835	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
GJQ55_RS01840	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
GJQ55_RS01845	COG1923	regulation of RNA biosynthetic process
GJQ55_RS01850	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
GJQ55_RS01855	COG0330	HflC and HflK could
GJQ55_RS01860	COG0330	HflC and HflK could
GJQ55_RS01870	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
GJQ55_RS01875	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
GJQ55_RS01885	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
GJQ55_RS01890	COG0235	Class ii aldolase
GJQ55_RS01895	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
GJQ55_RS01905	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
GJQ55_RS01910	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
GJQ55_RS01915	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GJQ55_RS01920	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
GJQ55_RS01925	COG0617	tRNA 3'-terminal CCA addition
GJQ55_RS01940	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GJQ55_RS01955	COG1489	DNA binding
GJQ55_RS01960	COG0436	Aminotransferase
GJQ55_RS01980	COG4191	Histidine kinase
GJQ55_RS02005	COG0417	DNA replication proofreading
GJQ55_RS02015	COG3148	PFAM DTW domain containing protein
GJQ55_RS02025	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
GJQ55_RS02050	COG0793	Belongs to the peptidase S41A family
GJQ55_RS02055	COG4942	peptidase
GJQ55_RS02055	COG4942	peptidase
GJQ55_RS02060	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GJQ55_RS02065	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_RS02070	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
GJQ55_RS02075	COG2133	pyrroloquinoline quinone binding
GJQ55_RS02080	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
GJQ55_RS02090	COG2204	response regulator
GJQ55_RS02095	COG3852	Histidine kinase
GJQ55_RS02105	COG3094	Invasion gene expression up-regulator, SirB
GJQ55_RS02120	COG2119	membrane
GJQ55_RS02145	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
GJQ55_RS02165	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GJQ55_RS02170	COG0671	phosphoesterase, PA-phosphatase related
GJQ55_RS02220	COG0579	oxidoreductase
GJQ55_RS02250	COG0438	transferase activity, transferring glycosyl groups
GJQ55_RS02265	COG2951	lytic endotransglycosylase activity
GJQ55_RS02270	COG0772	Belongs to the SEDS family
GJQ55_RS02275	COG0768	penicillin binding
GJQ55_RS02280	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
GJQ55_RS02295	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
GJQ55_RS02305	COG3300	MHYT domain
GJQ55_RS02305	COG5001	Diguanylate cyclase
GJQ55_RS02325	COG3012	SEC-C Motif Domain Protein
GJQ55_RS02340	COG1686	Belongs to the peptidase S11 family
GJQ55_RS02345	COG2921	Belongs to the UPF0250 family
GJQ55_RS02350	COG0321	lipoyl(octanoyl) transferase activity
GJQ55_RS02365	COG3118	belongs to the thioredoxin family
GJQ55_RS02375	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJQ55_RS02385	COG0142	geranyltranstransferase activity
GJQ55_RS02390	COG0261	This protein binds to 23S rRNA in the presence of protein L20
GJQ55_RS02400	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
GJQ55_RS02405	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
GJQ55_RS02410	COG2877	3-deoxy-8-phosphooctulonate synthase activity
GJQ55_RS02415	COG0268	Binds directly to 16S ribosomal RNA
GJQ55_RS02420	COG0728	peptidoglycan biosynthetic process
GJQ55_RS02425	COG0196	riboflavin kinase activity
GJQ55_RS02430	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GJQ55_RS02440	COG1047	Peptidyl-prolyl cis-trans
GJQ55_RS02445	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
GJQ55_RS02485	COG4968	Prepilin-type N-terminal cleavage methylation domain
GJQ55_RS02500	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GJQ55_RS02500	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
GJQ55_RS02525	COG0028	Belongs to the TPP enzyme family
GJQ55_RS02540	COG1272	protein, Hemolysin III
GJQ55_RS02545	COG2827	Endonuclease containing a URI domain
GJQ55_RS02575	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
GJQ55_RS02610	COG1611	Belongs to the LOG family
GJQ55_RS02615	COG2239	Acts as a magnesium transporter
GJQ55_RS02620	COG0004	ammonium transporteR
GJQ55_RS02630	COG0788	formyltetrahydrofolate deformylase activity
GJQ55_RS02635	COG0183	Belongs to the thiolase family
GJQ55_RS02655	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
GJQ55_RS02660	COG1040	competence protein
GJQ55_RS02665	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
GJQ55_RS02680	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS02685	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS02715	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GJQ55_RS02720	COG0134	indole-3-glycerol-phosphate synthase activity
GJQ55_RS02730	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
GJQ55_RS02740	COG3437	response regulator, receiver
GJQ55_RS02740	COG0784	Response regulator, receiver
GJQ55_RS02750	COG1765	OsmC-like protein
GJQ55_RS02755	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
GJQ55_RS02770	COG2813	Specifically methylates the guanine in position
GJQ55_RS02775	COG0789	Transcriptional regulator
GJQ55_RS02780	COG1366	Belongs to the anti-sigma-factor antagonist family
GJQ55_RS02800	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
GJQ55_RS02805	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GJQ55_RS02845	COG1466	dna polymerase III delta subunit
GJQ55_RS02850	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
GJQ55_RS02870	COG0840	transmembrane signaling receptor activity
GJQ55_RS02875	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
GJQ55_RS02890	COG0583	DNA-binding transcription factor activity
GJQ55_RS02910	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
GJQ55_RS02925	COG4221	oxidoreductase activity
GJQ55_RS02940	COG0415	Belongs to the DNA photolyase family
GJQ55_RS02945	COG0789	Transcriptional regulator
GJQ55_RS02960	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
GJQ55_RS02965	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS02970	COG1090	epimerase
GJQ55_RS02990	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
GJQ55_RS02995	COG0069	glutamate synthase activity
GJQ55_RS03010	COG0840	transmembrane signaling receptor activity
GJQ55_RS03015	COG2096	Adenosyltransferase
GJQ55_RS03025	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
GJQ55_RS03035	COG1666	GTP binding
GJQ55_RS03045	COG1940	carbohydrate kinase activity
GJQ55_RS03060	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
GJQ55_RS03070	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
GJQ55_RS03080	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
GJQ55_RS03090	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
GJQ55_RS03095	COG3258	Cytochrome c
GJQ55_RS03110	COG0783	Belongs to the Dps family
GJQ55_RS03140	COG4191	Histidine kinase
GJQ55_RS03145	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
GJQ55_RS03150	COG0028	Belongs to the TPP enzyme family
GJQ55_RS03155	COG1304	FMN binding
GJQ55_RS03165	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJQ55_RS03175	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
GJQ55_RS03180	COG0733	neurotransmitter:sodium symporter activity
GJQ55_RS03190	COG2914	Belongs to the UPF0125 (RnfH) family
GJQ55_RS03205	COG0497	DNA recombination
GJQ55_RS03210	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GJQ55_RS03215	COG0443	Heat shock 70 kDa protein
GJQ55_RS03220	COG0484	heat shock protein binding
GJQ55_RS03225	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
GJQ55_RS03250	COG1607	acyl-coa hydrolase
GJQ55_RS03255	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GJQ55_RS03270	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
GJQ55_RS03280	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GJQ55_RS03285	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJQ55_RS03290	COG0149	triose-phosphate isomerase activity
GJQ55_RS03305	COG0779	Required for maturation of 30S ribosomal subunits
GJQ55_RS03310	COG0195	Participates in both transcription termination and antitermination
GJQ55_RS03315	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
GJQ55_RS03320	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
GJQ55_RS03325	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
GJQ55_RS03335	COG1185	polyribonucleotide nucleotidyltransferase activity
GJQ55_RS03360	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GJQ55_RS03365	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
GJQ55_RS03385	COG3695	enzyme binding
GJQ55_RS03395	COG1804	L-carnitine dehydratase bile acid-inducible protein F
GJQ55_RS03400	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS03405	COG0183	Belongs to the thiolase family
GJQ55_RS03410	COG1024	Enoyl-CoA hydratase
GJQ55_RS03410	COG1250	3-hydroxyacyl-CoA dehydrogenase
GJQ55_RS03415	COG3437	response regulator, receiver
GJQ55_RS03415	COG0784	Response regulator, receiver
GJQ55_RS03425	COG0840	transmembrane signaling receptor activity
GJQ55_RS03435	COG0193	aminoacyl-tRNA hydrolase activity
GJQ55_RS03440	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
GJQ55_RS03455	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
GJQ55_RS03460	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
GJQ55_RS03470	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
GJQ55_RS03475	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
GJQ55_RS03480	COG2890	protein-(glutamine-N5) methyltransferase activity
GJQ55_RS03485	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJQ55_RS03495	COG0792	nuclease activity
GJQ55_RS03535	COG0500	methyltransferase
GJQ55_RS03545	COG2067	long-chain fatty acid transport protein
GJQ55_RS03605	COG0811	peptide transport
GJQ55_RS03610	COG0811	peptide transport
GJQ55_RS03615	COG0848	biopolymer transport protein
GJQ55_RS03620	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
GJQ55_RS03640	COG2937	Belongs to the GPAT DAPAT family
GJQ55_RS03645	COG2900	Belongs to the SlyX family
GJQ55_RS03680	COG0105	UTP biosynthetic process
GJQ55_RS03685	COG0820	rRNA (adenine-C2-)-methyltransferase activity
GJQ55_RS03700	COG0124	histidyl-tRNA synthetase
GJQ55_RS03705	COG2976	Protein conserved in bacteria
GJQ55_RS03715	COG1160	GTP binding
GJQ55_RS03730	COG1024	Enoyl-CoA hydratase
GJQ55_RS03735	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS03745	COG2832	Protein of unknown function (DUF454)
GJQ55_RS03765	COG4771	TonB-dependent receptor
GJQ55_RS03790	COG0471	metal ion transport
GJQ55_RS03795	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GJQ55_RS03795	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GJQ55_RS03800	COG4536	flavin adenine dinucleotide binding
GJQ55_RS03810	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GJQ55_RS03815	COG2862	Uncharacterized protein family, UPF0114
GJQ55_RS03820	COG3781	membrane
GJQ55_RS03855	COG2193	ferroxidase activity
GJQ55_RS03875	COG2084	Dehydrogenase
GJQ55_RS03880	COG3622	Belongs to the hyi family
GJQ55_RS03885	COG3313	Fe-S protein
GJQ55_RS03895	COG3706	GGDEF domain
GJQ55_RS03900	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GJQ55_RS03905	COG0346	lactoylglutathione lyase activity
GJQ55_RS03925	COG2171	N-acyltransferase activity
GJQ55_RS03930	COG1393	Belongs to the ArsC family
GJQ55_RS03950	COG1918	ferrous iron import across plasma membrane
GJQ55_RS03950	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
GJQ55_RS03970	COG2264	protein methyltransferase activity
GJQ55_RS03975	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
GJQ55_RS03980	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GJQ55_RS03985	COG1192	Involved in chromosome partitioning
GJQ55_RS03990	COG0084	hydrolase, TatD family'
GJQ55_RS04005	COG0741	lytic transglycosylase activity
GJQ55_RS04010	COG2264	protein methyltransferase activity
GJQ55_RS04025	COG0776	regulation of translation
GJQ55_RS04040	COG0284	orotidine-5'-phosphate decarboxylase activity
GJQ55_RS04055	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJQ55_RS04065	COG0438	transferase activity, transferring glycosyl groups
GJQ55_RS04085	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
GJQ55_RS04095	COG0438	transferase activity, transferring glycosyl groups
GJQ55_RS04125	COG1210	Utp--glucose-1-phosphate uridylyltransferase
GJQ55_RS04155	COG1442	glycosyl transferase family 8
GJQ55_RS04155	COG1216	Glycosyl transferase, family 2
GJQ55_RS04180	COG1215	transferase activity, transferring glycosyl groups
GJQ55_RS04190	COG3039	Transposase
GJQ55_RS04205	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
GJQ55_RS04240	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJQ55_RS04255	COG1024	Enoyl-CoA hydratase
GJQ55_RS04260	COG0583	DNA-binding transcription factor activity
GJQ55_RS04270	COG1741	Belongs to the pirin family
GJQ55_RS04290	COG0676	glucose-6-phosphate 1-epimerase activity
GJQ55_RS04300	COG0717	Belongs to the dCTP deaminase family
GJQ55_RS04325	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
GJQ55_RS04345	COG3243	poly(R)-hydroxyalkanoic acid synthase
GJQ55_RS04375	COG0582	viral genome integration into host DNA
GJQ55_RS04385	COG0789	Transcriptional regulator
GJQ55_RS04405	COG2132	Multicopper oxidase
GJQ55_RS04440	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS04445	COG5002	protein histidine kinase activity
GJQ55_RS04450	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS04515	COG2217	Heavy metal translocating P-type atpase
GJQ55_RS04540	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GJQ55_RS04600	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
GJQ55_RS04615	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
GJQ55_RS04625	COG1793	dna ligase
GJQ55_RS04640	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GJQ55_RS04670	COG0316	Belongs to the HesB IscA family
GJQ55_RS04675	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
GJQ55_RS04680	COG0719	Fe-S assembly protein
GJQ55_RS04685	COG0396	ATPase activity
GJQ55_RS04690	COG0719	Fe-S assembly protein
GJQ55_RS04705	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
GJQ55_RS04715	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GJQ55_RS04720	COG2252	PERMEase
GJQ55_RS04775	COG1393	Belongs to the ArsC family
GJQ55_RS04780	COG1295	ribonuclease BN
GJQ55_RS04795	COG0033	Phosphoglucomutase
GJQ55_RS04805	COG3112	Uncharacterised protein family (UPF0231)
GJQ55_RS04810	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GJQ55_RS04815	COG0418	dihydroorotase activity
GJQ55_RS04825	COG0137	argininosuccinate synthase activity
GJQ55_RS04830	COG1451	nucleotide metabolic process
GJQ55_RS04835	COG0583	DNA-binding transcription factor activity
GJQ55_RS04855	COG0840	transmembrane signaling receptor activity
GJQ55_RS04875	COG0300	oxidoreductase activity
GJQ55_RS04880	COG1025	Belongs to the peptidase M16 family
GJQ55_RS04890	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS04915	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
GJQ55_RS04925	COG2203	Gaf domain
GJQ55_RS04925	COG3706	GGDEF domain
GJQ55_RS04925	COG4251	negative regulation of phosphorylation
GJQ55_RS04925	COG5001	Diguanylate cyclase
GJQ55_RS04930	COG0204	Acyl-transferase
GJQ55_RS04940	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GJQ55_RS04950	COG2992	FlgJ-related protein
GJQ55_RS04990	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
GJQ55_RS04995	COG0077	Prephenate dehydratase
GJQ55_RS04995	COG1605	Chorismate mutase
GJQ55_RS05000	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
GJQ55_RS05005	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
GJQ55_RS05010	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
GJQ55_RS05025	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
GJQ55_RS05030	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
GJQ55_RS05040	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GJQ55_RS05045	COG0436	Aminotransferase
GJQ55_RS05050	COG0556	nucleotide-excision repair
GJQ55_RS05065	COG3154	lipid carrier protein
GJQ55_RS05070	COG0826	peptidase U32
GJQ55_RS05075	COG0826	peptidase U32
GJQ55_RS05110	COG3256	nitric oxide reductase
GJQ55_RS05115	COG2010	Cytochrome c
GJQ55_RS05120	COG0714	Associated with various cellular activities
GJQ55_RS05125	COG4771	TonB-dependent receptor
GJQ55_RS05150	COG3850	Histidine kinase
GJQ55_RS05155	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
GJQ55_RS05160	COG1140	nitrate reductase beta subunit
GJQ55_RS05165	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
GJQ55_RS05170	COG2181	nitrate reductase activity
GJQ55_RS05175	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJQ55_RS05185	COG2223	nitrite transmembrane transporter activity
GJQ55_RS05195	COG2223	nitrite transmembrane transporter activity
GJQ55_RS05220	COG0314	molybdopterin synthase activity
GJQ55_RS05225	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
GJQ55_RS05230	COG0315	cyclic pyranopterin monophosphate synthase activity
GJQ55_RS05235	COG0521	Mo-molybdopterin cofactor biosynthetic process
GJQ55_RS05240	COG0746	molybdenum cofactor guanylyltransferase activity
GJQ55_RS05245	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
GJQ55_RS05250	COG2197	response regulator
GJQ55_RS05265	COG3604	Transcriptional regulator
GJQ55_RS05275	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
GJQ55_RS05280	COG0521	Mo-molybdopterin cofactor biosynthetic process
GJQ55_RS05285	COG0693	protein deglycase activity
GJQ55_RS05300	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
GJQ55_RS05305	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
GJQ55_RS05310	COG0291	Belongs to the bacterial ribosomal protein bL35 family
GJQ55_RS05315	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GJQ55_RS05320	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
GJQ55_RS05325	COG0072	phenylalanine-tRNA ligase activity
GJQ55_RS05330	COG0776	regulation of translation
GJQ55_RS05355	COG1136	(ABC) transporter
GJQ55_RS05355	COG0577	efflux transmembrane transporter activity
GJQ55_RS05360	COG0577	efflux transmembrane transporter activity
GJQ55_RS05360	COG1136	(ABC) transporter
GJQ55_RS05375	COG3122	Protein conserved in bacteria
GJQ55_RS05385	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
GJQ55_RS05395	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_RS05400	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS05405	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS05415	COG3022	response to hydroperoxide
GJQ55_RS05430	COG2267	carboxylic ester hydrolase activity
GJQ55_RS05435	COG2925	Exonuclease
GJQ55_RS05440	COG0659	secondary active sulfate transmembrane transporter activity
GJQ55_RS05445	COG3174	membrane
GJQ55_RS05470	COG0668	transmembrane transport
GJQ55_RS05475	COG0730	response to heat
GJQ55_RS05480	COG0513	Belongs to the DEAD box helicase family
GJQ55_RS05485	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GJQ55_RS05490	COG1946	Acyl-CoA thioesterase
GJQ55_RS05510	COG0739	heme binding
GJQ55_RS05540	COG0519	Catalyzes the synthesis of GMP from XMP
GJQ55_RS05540	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GJQ55_RS05545	COG3093	addiction module antidote protein HigA
GJQ55_RS05570	COG1278	Cold shock
GJQ55_RS05580	COG3268	Saccharopine dehydrogenase
GJQ55_RS05590	COG0545	Peptidyl-prolyl cis-trans isomerase
GJQ55_RS05600	COG1054	Belongs to the UPF0176 family
GJQ55_RS05615	COG4660	Part of a membrane complex involved in electron transport
GJQ55_RS05620	COG4659	FMN binding
GJQ55_RS05625	COG4658	electron transport chain
GJQ55_RS05630	COG4656	Part of a membrane complex involved in electron transport
GJQ55_RS05635	COG2878	Part of a membrane complex involved in electron transport
GJQ55_RS05640	COG4657	Part of a membrane complex involved in electron transport
GJQ55_RS05650	COG0601	transmembrane transport
GJQ55_RS05655	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
GJQ55_RS05670	COG0489	protein tyrosine kinase activity
GJQ55_RS05675	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJQ55_RS05675	COG1902	pentaerythritol trinitrate reductase activity
GJQ55_RS05730	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
GJQ55_RS05735	COG0732	type I restriction modification DNA specificity domain
GJQ55_RS05750	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
GJQ55_RS05755	COG0741	lytic transglycosylase activity
GJQ55_RS05760	COG0442	prolyl-tRNA aminoacylation
GJQ55_RS05770	COG2818	Glycosylase
GJQ55_RS05800	COG0243	molybdopterin cofactor binding
GJQ55_RS05805	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJQ55_RS05815	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJQ55_RS05830	COG3707	response regulator
GJQ55_RS05835	COG1116	anion transmembrane transporter activity
GJQ55_RS05840	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
GJQ55_RS05845	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
GJQ55_RS05885	COG0686	Belongs to the AlaDH PNT family
GJQ55_RS05890	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
GJQ55_RS05895	COG1074	ATP-dependent DNA helicase activity
GJQ55_RS05900	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GJQ55_RS05920	COG1944	ATP diphosphatase activity
GJQ55_RS05925	COG0439	Biotin carboxylase
GJQ55_RS05940	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
GJQ55_RS05945	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
GJQ55_RS05950	COG0784	Response regulator, receiver
GJQ55_RS05950	COG0835	chemotaxis
GJQ55_RS05955	COG0633	Ferredoxin
GJQ55_RS05955	COG3217	Mosc domain protein beta barrel domain protein
GJQ55_RS05960	COG2084	Dehydrogenase
GJQ55_RS05975	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
GJQ55_RS05980	COG1053	succinate dehydrogenase
GJQ55_RS06025	COG1131	(ABC) transporter
GJQ55_RS06030	COG0842	Transport permease protein
GJQ55_RS06055	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJQ55_RS06075	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
GJQ55_RS06080	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
GJQ55_RS06090	COG2850	peptidyl-arginine hydroxylation
GJQ55_RS06110	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
GJQ55_RS06125	COG3267	Type II secretory pathway component ExeA
GJQ55_RS06125	COG3409	Peptidoglycan-binding domain 1 protein
GJQ55_RS06135	COG1199	ATP-dependent helicase activity
GJQ55_RS06150	COG4591	ABC-type transport system involved in lipoprotein release permease component
GJQ55_RS06170	COG0811	peptide transport
GJQ55_RS06175	COG0848	biopolymer transport protein
GJQ55_RS06180	COG1132	(ABC) transporter
GJQ55_RS06185	COG1663	tetraacyldisaccharide 4'-kinase activity
GJQ55_RS06190	COG2835	tetraacyldisaccharide 4'-kinase activity
GJQ55_RS06195	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GJQ55_RS06205	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJQ55_RS06210	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GJQ55_RS06215	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJQ55_RS06220	COG0215	cysteine-tRNA ligase activity
GJQ55_RS06250	COG0544	peptidyl-prolyl cis-trans isomerase activity
GJQ55_RS06255	COG0740	serine-type endopeptidase activity
GJQ55_RS06260	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
GJQ55_RS06265	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GJQ55_RS06275	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJQ55_RS06290	COG1388	LysM domain
GJQ55_RS06290	COG0741	lytic transglycosylase activity
GJQ55_RS06325	COG0640	Transcriptional regulator
GJQ55_RS06330	COG1477	protein flavinylation
GJQ55_RS06340	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GJQ55_RS06355	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
GJQ55_RS06365	COG2915	High frequency lysogenization protein hflD homolog
GJQ55_RS06390	COG1278	Cold shock
GJQ55_RS06395	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
GJQ55_RS06400	COG0542	response to heat
GJQ55_RS06405	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
GJQ55_RS06410	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
GJQ55_RS06415	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
GJQ55_RS06430	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
GJQ55_RS06435	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
GJQ55_RS06440	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GJQ55_RS06445	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
GJQ55_RS06460	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GJQ55_RS06465	COG2920	part of a sulfur-relay system
GJQ55_RS06480	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
GJQ55_RS06490	COG0123	including yeast histone deacetylase and acetoin utilization protein
GJQ55_RS06500	COG2197	response regulator
GJQ55_RS06545	COG0560	Phosphoserine phosphatase
GJQ55_RS06585	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
GJQ55_RS06605	COG2186	Transcriptional regulator
GJQ55_RS06610	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
GJQ55_RS06615	COG0372	Belongs to the citrate synthase family
GJQ55_RS06630	COG2828	Protein conserved in bacteria
GJQ55_RS06640	COG1530	ribonuclease E activity
GJQ55_RS06650	COG0564	pseudouridine synthase activity
GJQ55_RS06655	COG0546	phosphoglycolate phosphatase activity
GJQ55_RS06660	COG0616	signal peptide processing
GJQ55_RS06665	COG1399	metal-binding, possibly nucleic acid-binding protein
GJQ55_RS06670	COG0333	Belongs to the bacterial ribosomal protein bL32 family
GJQ55_RS06675	COG0416	fatty acid biosynthetic process
GJQ55_RS06680	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
GJQ55_RS06690	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GJQ55_RS06695	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
GJQ55_RS06700	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
GJQ55_RS06705	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
GJQ55_RS06710	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
GJQ55_RS06740	COG0811	peptide transport
GJQ55_RS06745	COG0811	peptide transport
GJQ55_RS06750	COG0848	biopolymer transport protein
GJQ55_RS06765	COG0708	Exodeoxyribonuclease III
GJQ55_RS06775	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_RS06775	COG0301	tRNA thio-modification
GJQ55_RS06790	COG1309	transcriptional regulator
GJQ55_RS06815	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GJQ55_RS06885	COG0316	Belongs to the HesB IscA family
GJQ55_RS06885	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
GJQ55_RS06895	COG0534	Mate efflux family protein
GJQ55_RS06900	COG0584	glycerophosphoryl diester phosphodiesterase
GJQ55_RS06905	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJQ55_RS06915	COG0616	signal peptide processing
GJQ55_RS06925	COG2853	Lipoprotein
GJQ55_RS06930	COG1643	Atp-dependent helicase
GJQ55_RS06935	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_RS06940	COG2267	carboxylic ester hydrolase activity
GJQ55_RS06945	COG2030	dehydratase
GJQ55_RS07005	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GJQ55_RS07025	COG2983	Belongs to the UPF0260 family
GJQ55_RS07030	COG3100	YcgL domain-containing protein
GJQ55_RS07040	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
GJQ55_RS07045	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
GJQ55_RS07050	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GJQ55_RS07065	COG1067	ATP-dependent peptidase activity
GJQ55_RS07070	COG2198	Histidine kinase
GJQ55_RS07070	COG0784	Response regulator, receiver
GJQ55_RS07070	COG2205	protein histidine kinase activity
GJQ55_RS07100	COG0824	Thioesterase
GJQ55_RS07105	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GJQ55_RS07110	COG5265	(ABC) transporter
GJQ55_RS07140	COG0667	Aldo Keto reductase
GJQ55_RS07145	COG3118	belongs to the thioredoxin family
GJQ55_RS07165	COG0714	Associated with various cellular activities
GJQ55_RS07180	COG1286	toxin biosynthetic process
GJQ55_RS07190	COG0285	dihydrofolate synthase activity
GJQ55_RS07195	COG0159	tryptophan synthase activity
GJQ55_RS07200	COG0133	tryptophan synthase activity
GJQ55_RS07205	COG0135	phosphoribosylanthranilate isomerase activity
GJQ55_RS07210	COG0101	tRNA pseudouridine synthase activity
GJQ55_RS07225	COG0473	3-isopropylmalate dehydrogenase activity
GJQ55_RS07230	COG0066	3-isopropylmalate dehydratase activity
GJQ55_RS07235	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
GJQ55_RS07245	COG0589	response to stress
GJQ55_RS07265	COG2813	Specifically methylates the guanine in position
GJQ55_RS07280	COG0826	peptidase U32
GJQ55_RS07300	COG0406	alpha-ribazole phosphatase activity
GJQ55_RS07310	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
GJQ55_RS07320	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS07340	COG3263	regulation of cellular component size
GJQ55_RS07380	COG1846	Transcriptional regulator
GJQ55_RS07385	COG0386	Belongs to the glutathione peroxidase family
GJQ55_RS07390	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GJQ55_RS07395	COG0436	Aminotransferase
GJQ55_RS07420	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GJQ55_RS07425	COG0243	molybdopterin cofactor binding
GJQ55_RS07430	COG1049	propionate catabolic process, 2-methylcitrate cycle
GJQ55_RS07445	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GJQ55_RS07450	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
GJQ55_RS07460	COG0204	Acyl-transferase
GJQ55_RS07465	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
GJQ55_RS07475	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GJQ55_RS07500	COG0189	ligase activity
GJQ55_RS07510	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GJQ55_RS07515	COG1187	pseudouridine synthase activity
GJQ55_RS07520	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
GJQ55_RS07525	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GJQ55_RS07530	COG1335	isochorismatase
GJQ55_RS07535	COG2837	iron assimilation
GJQ55_RS07540	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
GJQ55_RS07545	COG4977	sequence-specific DNA binding
GJQ55_RS07550	COG3228	Belongs to the MtfA family
GJQ55_RS07570	COG1598	PFAM Uncharacterised protein family UPF0150
GJQ55_RS07585	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
GJQ55_RS07615	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
GJQ55_RS07635	COG4771	TonB-dependent receptor
GJQ55_RS07645	COG3278	Belongs to the heme-copper respiratory oxidase family
GJQ55_RS07660	COG2010	Cytochrome c
GJQ55_RS07675	COG2217	Heavy metal translocating P-type atpase
GJQ55_RS07690	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
GJQ55_RS07695	COG0037	tRNA processing
GJQ55_RS07705	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJQ55_RS07710	COG0484	heat shock protein binding
GJQ55_RS07730	COG2885	chlorophyll binding
GJQ55_RS07740	COG0271	Belongs to the BolA IbaG family
GJQ55_RS07755	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
GJQ55_RS07770	COG0640	Transcriptional regulator
GJQ55_RS07805	COG3706	GGDEF domain
GJQ55_RS07815	COG0302	gtp cyclohydrolase
GJQ55_RS07820	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJQ55_RS07835	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS07845	COG0318	PFAM AMP-dependent synthetase and ligase
GJQ55_RS07850	COG3239	Fatty acid desaturase
GJQ55_RS07860	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GJQ55_RS07880	COG0789	Transcriptional regulator
GJQ55_RS07885	COG3706	GGDEF domain
GJQ55_RS07885	COG4251	negative regulation of phosphorylation
GJQ55_RS07885	COG5001	Diguanylate cyclase
GJQ55_RS07885	COG2203	Gaf domain
GJQ55_RS07890	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
GJQ55_RS07910	COG3323	Protein of unknown function (DUF1653)
GJQ55_RS07910	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GJQ55_RS07935	COG0564	pseudouridine synthase activity
GJQ55_RS07945	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GJQ55_RS07970	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
GJQ55_RS07975	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GJQ55_RS07980	COG2226	methyltransferase
GJQ55_RS07995	COG0525	valine-tRNA ligase activity
GJQ55_RS08020	COG3384	dioxygenase
GJQ55_RS08085	COG1819	glycosyl
GJQ55_RS08125	COG0525	valine-tRNA ligase activity
GJQ55_RS08130	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
GJQ55_RS08150	COG0386	Belongs to the glutathione peroxidase family
GJQ55_RS08175	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
GJQ55_RS08190	COG1862	Preprotein translocase
GJQ55_RS08195	COG0343	queuine tRNA-ribosyltransferase activity
GJQ55_RS08200	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
GJQ55_RS08230	COG2203	Gaf domain
GJQ55_RS08230	COG3706	GGDEF domain
GJQ55_RS08230	COG4251	negative regulation of phosphorylation
GJQ55_RS08230	COG5001	Diguanylate cyclase
GJQ55_RS08235	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GJQ55_RS08240	COG0300	oxidoreductase activity
GJQ55_RS08250	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
GJQ55_RS08255	COG2945	thiolester hydrolase activity
GJQ55_RS08260	COG0175	sulfate reduction
GJQ55_RS08275	COG3001	Fructosamine kinase
GJQ55_RS08280	COG0259	pyridoxamine-phosphate oxidase activity
GJQ55_RS08290	COG0795	lipopolysaccharide-transporting ATPase activity
GJQ55_RS08295	COG0795	lipopolysaccharide-transporting ATPase activity
GJQ55_RS08300	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
GJQ55_RS08305	COG0778	Nitroreductase
GJQ55_RS08320	COG0300	oxidoreductase activity
GJQ55_RS08335	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
GJQ55_RS08350	COG1805	sodium ion transport
GJQ55_RS08355	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
GJQ55_RS08365	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
GJQ55_RS08395	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
GJQ55_RS08420	COG0326	Molecular chaperone. Has ATPase activity
GJQ55_RS08425	COG0352	thiamine-phosphate diphosphorylase activity
GJQ55_RS08430	COG2022	thiamine diphosphate biosynthetic process
GJQ55_RS08445	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
GJQ55_RS08485	COG0800	Aldolase
GJQ55_RS08495	COG0363	glucosamine-6-phosphate deaminase activity
GJQ55_RS08510	COG0545	Peptidyl-prolyl cis-trans isomerase
GJQ55_RS08530	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GJQ55_RS08535	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GJQ55_RS08545	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GJQ55_RS08555	COG0425	Belongs to the sulfur carrier protein TusA family
GJQ55_RS08560	COG4783	chaperone-mediated protein folding
GJQ55_RS08565	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
GJQ55_RS08580	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
GJQ55_RS08590	COG0823	Involved in the tonB-independent uptake of proteins
GJQ55_RS08610	COG0824	Thioesterase
GJQ55_RS08615	COG2255	four-way junction helicase activity
GJQ55_RS08620	COG0632	four-way junction helicase activity
GJQ55_RS08645	COG0583	DNA-binding transcription factor activity
GJQ55_RS08655	COG0793	Belongs to the peptidase S41A family
GJQ55_RS08660	COG0425	Belongs to the sulfur carrier protein TusA family
GJQ55_RS08665	COG0183	Belongs to the thiolase family
GJQ55_RS08670	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_RS08695	COG1643	Atp-dependent helicase
GJQ55_RS08710	COG0307	riboflavin synthase, alpha
GJQ55_RS08745	COG3130	regulation of translation
GJQ55_RS08765	COG0714	Associated with various cellular activities
GJQ55_RS08780	COG2304	oxidoreductase activity
GJQ55_RS08795	COG1858	cytochrome C peroxidase
GJQ55_RS08800	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GJQ55_RS08805	COG3115	cell septum assembly
GJQ55_RS08805	COG3115	cell septum assembly
GJQ55_RS08825	COG2860	membrane
GJQ55_RS08830	COG0840	transmembrane signaling receptor activity
GJQ55_RS08845	COG0183	Belongs to the thiolase family
GJQ55_RS08850	COG1250	3-hydroxyacyl-CoA dehydrogenase
GJQ55_RS08850	COG1024	Enoyl-CoA hydratase
GJQ55_RS08865	COG0488	(ABC) transporter
GJQ55_RS08935	COG0308	aminopeptidase N
GJQ55_RS08950	COG0705	Rhomboid family
GJQ55_RS08955	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GJQ55_RS08960	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
GJQ55_RS09015	COG2169	Transcriptional regulator
GJQ55_RS09020	COG0429	hydrolase of the alpha beta-hydrolase fold
GJQ55_RS09030	COG0681	Belongs to the peptidase S26 family
GJQ55_RS09045	COG2095	MarC family integral membrane protein
GJQ55_RS09060	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GJQ55_RS09080	COG2198	Histidine kinase
GJQ55_RS09080	COG2205	protein histidine kinase activity
GJQ55_RS09080	COG0784	Response regulator, receiver
GJQ55_RS09090	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
GJQ55_RS09115	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GJQ55_RS09120	COG1138	Cytochrome C-type biogenesis protein
GJQ55_RS09125	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
GJQ55_RS09140	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
GJQ55_RS09145	COG4133	protoheme IX ABC transporter activity
GJQ55_RS09155	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GJQ55_RS09165	COG1285	pathogenesis
GJQ55_RS09170	COG0402	S-adenosylhomocysteine deaminase activity
GJQ55_RS09185	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_RS09200	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
GJQ55_RS09215	COG0009	L-threonylcarbamoyladenylate synthase
GJQ55_RS09220	COG0613	PHP domain protein
GJQ55_RS09225	COG2350	Protein conserved in bacteria
GJQ55_RS09235	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GJQ55_RS09245	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
GJQ55_RS09245	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GJQ55_RS09270	COG0633	Ferredoxin
GJQ55_RS09270	COG0543	2 iron, 2 sulfur cluster binding
GJQ55_RS09280	COG2081	HI0933 family
GJQ55_RS09290	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GJQ55_RS09295	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJQ55_RS09300	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJQ55_RS09330	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GJQ55_RS09335	COG0575	Belongs to the CDS family
GJQ55_RS09340	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GJQ55_RS09345	COG0233	cytoplasmic translational termination
GJQ55_RS09350	COG0528	UMP kinase activity
GJQ55_RS09355	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
GJQ55_RS09360	COG0052	Belongs to the universal ribosomal protein uS2 family
GJQ55_RS09365	COG0024	Methionine aminopeptidase
GJQ55_RS09370	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
GJQ55_RS09375	COG1741	Belongs to the pirin family
GJQ55_RS09380	COG0513	Belongs to the DEAD box helicase family
GJQ55_RS09400	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
GJQ55_RS09405	COG0602	queuosine metabolic process
GJQ55_RS09410	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_RS09410	COG3321	synthase
GJQ55_RS09410	COG0604	alcohol dehydrogenase
GJQ55_RS09420	COG3085	chromosome segregation
GJQ55_RS09425	COG0189	ligase activity
GJQ55_RS09425	COG4067	protein conserved in archaea
GJQ55_RS09430	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
GJQ55_RS09445	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
GJQ55_RS09450	COG0583	DNA-binding transcription factor activity
GJQ55_RS09455	COG2205	protein histidine kinase activity
GJQ55_RS09460	COG0745	RESPONSE REGULATOR receiver
GJQ55_RS09465	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GJQ55_RS09475	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GJQ55_RS09485	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
GJQ55_RS09515	COG0835	chemotaxis
GJQ55_RS09525	COG1192	Involved in chromosome partitioning
GJQ55_RS09535	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GJQ55_RS09545	COG0643	Histidine kinase
GJQ55_RS09545	COG2198	Histidine kinase
GJQ55_RS09545	COG0784	Response regulator, receiver
GJQ55_RS09575	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GJQ55_RS09580	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GJQ55_RS09590	COG1987	bacterial-type flagellum assembly
GJQ55_RS09655	COG1677	Flagellar hook-basal body complex protein FliE
GJQ55_RS09685	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
GJQ55_RS09690	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
GJQ55_RS09755	COG1706	bacterial-type flagellum-dependent cell motility
GJQ55_RS09760	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
GJQ55_RS09765	COG4786	Flagellar basal body rod
GJQ55_RS09770	COG4787	bacterial-type flagellum-dependent cell motility
GJQ55_RS09780	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
GJQ55_RS09790	COG1815	bacterial-type flagellum-dependent cell motility
GJQ55_RS09800	COG0784	Response regulator, receiver
GJQ55_RS09800	COG0835	chemotaxis
GJQ55_RS09820	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
GJQ55_RS09845	COG0393	Putative heavy-metal-binding
GJQ55_RS09855	COG4783	chaperone-mediated protein folding
GJQ55_RS09860	COG0492	ferredoxin-NADP+ reductase activity
GJQ55_RS09885	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
GJQ55_RS09900	COG0564	pseudouridine synthase activity
GJQ55_RS09905	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GJQ55_RS09910	COG0335	large ribosomal subunit rRNA binding
GJQ55_RS09915	COG0336	Belongs to the RNA methyltransferase TrmD family
GJQ55_RS09920	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
GJQ55_RS09925	COG0228	four-way junction DNA binding
GJQ55_RS09930	COG1283	sodium-dependent phosphate transmembrane transporter activity
GJQ55_RS09970	COG0047	phosphoribosylformylglycinamidine synthase activity
GJQ55_RS09970	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
GJQ55_RS09975	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
GJQ55_RS09990	COG0023	Translation Initiation Factor
GJQ55_RS09995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GJQ55_RS09995	COG4191	Histidine kinase
GJQ55_RS10000	COG1522	sequence-specific DNA binding
GJQ55_RS10005	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GJQ55_RS10010	COG0210	DNA helicase
GJQ55_RS10020	COG0625	glutathione transferase activity
GJQ55_RS10030	COG4191	Histidine kinase
GJQ55_RS10030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GJQ55_RS10035	COG3123	guanosine phosphorylase activity
GJQ55_RS10045	COG3530	Putative quorum-sensing-regulated virulence factor
GJQ55_RS10050	COG0519	Catalyzes the synthesis of GMP from XMP
GJQ55_RS10050	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GJQ55_RS10075	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
GJQ55_RS10090	COG1968	undecaprenyl-diphosphatase activity
GJQ55_RS10095	COG1214	PFAM Peptidase M22, glycoprotease
GJQ55_RS10105	COG0563	adenylate kinase activity
GJQ55_RS10110	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
GJQ55_RS10115	COG3956	TIGRFAM MazG family protein
GJQ55_RS10120	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJQ55_RS10125	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GJQ55_RS10135	COG5002	protein histidine kinase activity
GJQ55_RS10135	COG2205	protein histidine kinase activity
GJQ55_RS10135	COG0784	Response regulator, receiver
GJQ55_RS10140	COG0736	holo-[acyl-carrier-protein] synthase activity
GJQ55_RS10150	COG1381	Involved in DNA repair and RecF pathway recombination
GJQ55_RS10155	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
GJQ55_RS10160	COG0571	ribonuclease III activity
GJQ55_RS10170	COG0481	GTPase activity
GJQ55_RS10175	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GJQ55_RS10225	COG1024	Enoyl-CoA hydratase
GJQ55_RS10235	COG0596	Alpha beta hydrolase
GJQ55_RS10245	COG0488	(ABC) transporter
GJQ55_RS10275	COG0189	ligase activity
GJQ55_RS10285	COG0084	hydrolase, TatD family'
GJQ55_RS10295	COG0513	Belongs to the DEAD box helicase family
GJQ55_RS10300	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_RS10305	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
GJQ55_RS10355	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
GJQ55_RS10380	COG1132	(ABC) transporter
GJQ55_RS10385	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJQ55_RS10395	COG0705	Rhomboid family
GJQ55_RS10400	COG1024	Enoyl-CoA hydratase
GJQ55_RS10405	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
GJQ55_RS10410	COG2814	Major facilitator Superfamily
GJQ55_RS10415	COG1309	transcriptional regulator
GJQ55_RS10435	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GJQ55_RS10440	COG1702	phosphate starvation-inducible protein PhoH
GJQ55_RS10450	COG4535	Mg2 and Co2 transporter CorC
GJQ55_RS10455	COG0815	Transfers the fatty acyl group on membrane lipoproteins
GJQ55_RS10465	COG0494	nUDIX hydrolase
GJQ55_RS10470	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
GJQ55_RS10475	COG0653	protein targeting
GJQ55_RS10480	COG0739	heme binding
GJQ55_RS10500	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
GJQ55_RS10505	COG1181	Belongs to the D-alanine--D-alanine ligase family
GJQ55_RS10510	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GJQ55_RS10515	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
GJQ55_RS10520	COG0772	Belongs to the SEDS family
GJQ55_RS10525	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
GJQ55_RS10530	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
GJQ55_RS10535	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
GJQ55_RS10540	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GJQ55_RS10550	COG3116	cell division
GJQ55_RS10555	COG0275	rRNA processing
GJQ55_RS10580	COG0450	alkyl hydroperoxide reductase
GJQ55_RS10600	COG1309	transcriptional regulator
GJQ55_RS10605	COG0509	glycine decarboxylation via glycine cleavage system
GJQ55_RS10620	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
GJQ55_RS10625	COG0579	oxidoreductase
GJQ55_RS10630	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
GJQ55_RS10640	COG3630	sodium ion export across plasma membrane
GJQ55_RS10655	COG0625	glutathione transferase activity
GJQ55_RS10660	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GJQ55_RS10665	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJQ55_RS10670	COG2226	methyltransferase
GJQ55_RS10675	COG1322	Protein conserved in bacteria
GJQ55_RS10690	COG3023	N-Acetylmuramoyl-L-alanine amidase
GJQ55_RS10695	COG1115	amino acid carrier protein
GJQ55_RS10725	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
GJQ55_RS10730	COG0237	dephospho-CoA kinase activity
GJQ55_RS10735	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
GJQ55_RS10760	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
GJQ55_RS10765	COG2264	protein methyltransferase activity
GJQ55_RS10775	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GJQ55_RS10785	COG0138	bifunctional purine biosynthesis protein purh
GJQ55_RS10790	COG0151	Belongs to the GarS family
GJQ55_RS10795	COG0784	Response regulator, receiver
GJQ55_RS10795	COG5002	protein histidine kinase activity
GJQ55_RS10800	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GJQ55_RS10805	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
GJQ55_RS10815	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
GJQ55_RS10820	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
GJQ55_RS10825	COG3178	'Phosphotransferase
GJQ55_RS10830	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
GJQ55_RS10835	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJQ55_RS10840	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
GJQ55_RS10845	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
GJQ55_RS10850	COG2967	ApaG domain
GJQ55_RS10855	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GJQ55_RS10860	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJQ55_RS10885	COG0617	tRNA 3'-terminal CCA addition
GJQ55_RS10890	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
GJQ55_RS10890	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GJQ55_RS10895	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GJQ55_RS10900	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
GJQ55_RS10905	COG0828	Belongs to the bacterial ribosomal protein bS21 family
GJQ55_RS10910	COG1610	YqeY-like protein
GJQ55_RS10915	COG0358	DNA primase activity
GJQ55_RS10940	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
GJQ55_RS10965	COG0697	spore germination
GJQ55_RS10970	COG1280	lysine exporter protein (LysE YggA)
GJQ55_RS11000	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJQ55_RS11025	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
GJQ55_RS11030	COG0527	aspartate kinase activity
GJQ55_RS11035	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GJQ55_RS11055	COG0596	Alpha beta hydrolase
GJQ55_RS11060	COG1252	NADH dehydrogenase
GJQ55_RS11065	COG2137	regulation of response to DNA damage stimulus
GJQ55_RS11070	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
GJQ55_RS11075	COG1546	Belongs to the CinA family
GJQ55_RS11080	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
GJQ55_RS11085	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
GJQ55_RS11105	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
GJQ55_RS11110	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
GJQ55_RS11115	COG0585	pseudouridine synthase activity
GJQ55_RS11120	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GJQ55_RS11125	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
GJQ55_RS11140	COG0504	CTP synthase activity
GJQ55_RS11150	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GJQ55_RS11165	COG0840	transmembrane signaling receptor activity
GJQ55_RS11175	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GJQ55_RS11180	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GJQ55_RS11190	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
GJQ55_RS11195	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
GJQ55_RS11200	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GJQ55_RS11205	COG5007	Belongs to the BolA IbaG family
GJQ55_RS11215	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
GJQ55_RS11220	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
GJQ55_RS11225	COG1127	ABC transporter
GJQ55_RS11245	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
GJQ55_RS11250	COG1137	ATPase activity
GJQ55_RS11270	COG1660	Displays ATPase and GTPase activities
GJQ55_RS11280	COG2239	Acts as a magnesium transporter
GJQ55_RS11290	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GJQ55_RS11300	COG1530	ribonuclease E activity
GJQ55_RS11305	COG0424	maF-like protein
GJQ55_RS11315	COG1792	Involved in formation and maintenance of cell shape
GJQ55_RS11320	COG1077	Cell shape determining protein MreB Mrl
GJQ55_RS11325	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GJQ55_RS11330	COG0154	amidase activity
GJQ55_RS11335	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GJQ55_RS11345	COG2969	positive regulation of protein catabolic process
GJQ55_RS11350	COG0625	glutathione transferase activity
GJQ55_RS11355	COG2857	Cytochrome c1
GJQ55_RS11360	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
GJQ55_RS11365	COG0723	plastoquinol--plastocyanin reductase activity
GJQ55_RS11370	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GJQ55_RS11385	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
GJQ55_RS11395	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
GJQ55_RS11405	COG0456	acetyltransferase
GJQ55_RS11415	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GJQ55_RS11420	COG1477	protein flavinylation
GJQ55_RS11430	COG0018	arginyl-trna synthetase
GJQ55_RS11435	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
GJQ55_RS11450	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
GJQ55_RS11455	COG1687	branched-chain amino acid
GJQ55_RS11465	COG0129	dihydroxy-acid dehydratase activity
GJQ55_RS11470	COG1119	ATPase activity
GJQ55_RS11475	COG0537	adenosine 5'-monophosphoramidase activity
GJQ55_RS11495	COG1183	phosphatidylcholine synthase activity
GJQ55_RS11505	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
GJQ55_RS11510	COG2200	EAL domain
GJQ55_RS11520	COG2166	iron-sulfur cluster assembly
GJQ55_RS11525	COG0840	transmembrane signaling receptor activity
GJQ55_RS11530	COG1136	(ABC) transporter
GJQ55_RS11530	COG0577	efflux transmembrane transporter activity
GJQ55_RS11535	COG0577	efflux transmembrane transporter activity
GJQ55_RS11535	COG1136	(ABC) transporter
GJQ55_RS11555	COG0126	phosphoglycerate kinase activity
GJQ55_RS11565	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
GJQ55_RS11575	COG0252	asparaginase activity
GJQ55_RS11580	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
GJQ55_RS11595	COG0564	pseudouridine synthase activity
GJQ55_RS11620	COG4115	mRNA cleavage
GJQ55_RS11625	COG2161	toxin-antitoxin pair type II binding
GJQ55_RS11630	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
GJQ55_RS11635	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GJQ55_RS11645	COG0583	DNA-binding transcription factor activity
GJQ55_RS11655	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GJQ55_RS11660	COG0730	response to heat
GJQ55_RS11680	COG0826	peptidase U32
GJQ55_RS11695	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
GJQ55_RS11700	COG2315	Protein conserved in bacteria
GJQ55_RS11735	COG0305	Participates in initiation and elongation during chromosome replication
GJQ55_RS11740	COG0359	binds to the 23S rRNA
GJQ55_RS11750	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GJQ55_RS11755	COG0360	Binds together with S18 to 16S ribosomal RNA
GJQ55_RS11770	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
GJQ55_RS11775	COG0288	reversible hydration of carbon dioxide
GJQ55_RS11785	COG0439	Biotin carboxylase
GJQ55_RS11795	COG3634	alkyl hydroperoxide reductase activity
GJQ55_RS11800	COG0450	alkyl hydroperoxide reductase
GJQ55_RS11810	COG0557	exoribonuclease II activity
GJQ55_RS11820	COG0840	transmembrane signaling receptor activity
GJQ55_RS11825	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
GJQ55_RS11830	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
GJQ55_RS11835	COG1047	Peptidyl-prolyl cis-trans
GJQ55_RS11855	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GJQ55_RS11865	COG0254	rRNA binding
GJQ55_RS11870	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
GJQ55_RS11875	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
GJQ55_RS11880	COG1309	transcriptional regulator
GJQ55_RS11890	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
GJQ55_RS11900	COG0493	'glutamate synthase
GJQ55_RS11905	COG0069	glutamate synthase activity
GJQ55_RS11905	COG0070	glutamate synthase
GJQ55_RS11905	COG0067	glutamate synthase
GJQ55_RS11915	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
GJQ55_RS11920	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
GJQ55_RS11955	COG0277	FAD linked oxidase domain protein
GJQ55_RS11960	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GJQ55_RS11965	COG0107	imidazoleglycerol-phosphate synthase activity
GJQ55_RS11970	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
GJQ55_RS11980	COG0131	Imidazoleglycerol-phosphate dehydratase
GJQ55_RS12000	COG1194	a g-specific adenine glycosylase
GJQ55_RS12005	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
GJQ55_RS12045	COG0739	heme binding
GJQ55_RS12055	COG0316	Belongs to the HesB IscA family
GJQ55_RS12070	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
GJQ55_RS12080	COG1981	membrane
GJQ55_RS12085	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
GJQ55_RS12105	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GJQ55_RS12110	COG1757	Na H antiporter
GJQ55_RS12125	COG0121	glutamine amidotransferase
GJQ55_RS12145	COG1785	Belongs to the alkaline phosphatase family
GJQ55_RS12150	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
GJQ55_RS12155	COG1305	Transglutaminase-like
GJQ55_RS12165	COG0714	Associated with various cellular activities
GJQ55_RS12170	COG0640	Transcriptional regulator
GJQ55_RS12175	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
GJQ55_RS12185	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
GJQ55_RS12190	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
GJQ55_RS12205	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJQ55_RS12215	COG0463	Glycosyl transferase, family 2
GJQ55_RS12225	COG3307	-O-antigen
GJQ55_RS12235	COG2201	protein-glutamate methylesterase activity
GJQ55_RS12240	COG0784	Response regulator, receiver
GJQ55_RS12240	COG2198	Histidine kinase
GJQ55_RS12240	COG0643	Histidine kinase
GJQ55_RS12245	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
GJQ55_RS12250	COG0840	transmembrane signaling receptor activity
GJQ55_RS12270	COG0189	ligase activity
GJQ55_RS12280	COG1678	Uncharacterized ACR, COG1678
GJQ55_RS12285	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
GJQ55_RS12290	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
GJQ55_RS12295	COG0540	Belongs to the ATCase OTCase family
GJQ55_RS12305	COG1519	Transferase
GJQ55_RS12310	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
GJQ55_RS12310	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
GJQ55_RS12315	COG1560	Kdo2-lipid A biosynthetic process
GJQ55_RS12325	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
GJQ55_RS12340	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
GJQ55_RS12340	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GJQ55_RS12360	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
GJQ55_RS12365	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
GJQ55_RS12375	COG0730	response to heat
GJQ55_RS12385	COG2989	Protein conserved in bacteria
GJQ55_RS12390	COG3108	Peptidase M15
GJQ55_RS12395	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
GJQ55_RS12400	COG0494	nUDIX hydrolase
GJQ55_RS12425	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
GJQ55_RS12430	COG0210	DNA helicase
GJQ55_RS12445	COG0004	ammonium transporteR
GJQ55_RS12450	COG0347	Belongs to the P(II) protein family
GJQ55_RS12480	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS12485	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_RS12500	COG1028	Short-chain dehydrogenase reductase Sdr
GJQ55_RS12505	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
GJQ55_RS12510	COG1538	Outer membrane efflux protein
GJQ55_RS12515	COG0494	nUDIX hydrolase
GJQ55_RS12525	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
GJQ55_RS12530	COG3150	esterase
GJQ55_RS12545	COG1741	Belongs to the pirin family
GJQ55_RS12575	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
GJQ55_RS12585	COG1011	Hydrolase
GJQ55_RS12605	COG0513	Belongs to the DEAD box helicase family
GJQ55_RS12620	COG1704	LemA family
GJQ55_RS12625	COG0501	Belongs to the peptidase M48B family
GJQ55_RS12635	COG2177	Part of the ABC transporter FtsEX involved in
GJQ55_RS12640	COG2884	Cell division ATP-binding protein ftsE
GJQ55_RS12645	COG0552	protein localization to endoplasmic reticulum
GJQ55_RS12655	COG0742	ribosomal rna small subunit methyltransferase
GJQ55_RS12680	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
GJQ55_RS12685	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GJQ55_RS12690	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
GJQ55_RS12695	COG0405	Gamma-glutamyltransferase
GJQ55_RS12700	COG1434	Gram-negative-bacterium-type cell wall biogenesis
GJQ55_RS12715	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GJQ55_RS12720	COG0227	Belongs to the bacterial ribosomal protein bL28 family
GJQ55_RS12725	COG2003	Belongs to the UPF0758 family
GJQ55_RS12735	COG0756	dUTP diphosphatase activity
GJQ55_RS12745	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GJQ55_RS12750	COG1309	transcriptional regulator
GJQ55_RS12760	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
GJQ55_RS12770	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
GJQ55_RS12775	COG1561	YicC-like family, N-terminal region
GJQ55_RS12785	COG1758	RNA polymerase activity
GJQ55_RS12790	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJQ55_RS12805	COG0583	DNA-binding transcription factor activity
GJQ55_RS12810	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
GJQ55_RS12825	COG0501	Belongs to the peptidase M48B family
GJQ55_RS12830	COG4774	siderophore transport
GJQ55_RS12850	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
GJQ55_RS12870	COG1960	acyl-CoA dehydrogenase activity
GJQ55_RS12875	COG0471	metal ion transport
GJQ55_RS12875	COG3273	potassium ion transport
GJQ55_RS12885	COG0471	metal ion transport
GJQ55_RS12885	COG3273	potassium ion transport
GJQ55_RS12895	COG0494	nUDIX hydrolase
GJQ55_RS12900	COG1011	Hydrolase
GJQ55_RS12905	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
GJQ55_RS12910	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
GJQ55_RS12915	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
GJQ55_RS12985	COG2183	response to ionizing radiation
GJQ55_RS12995	COG2918	glutathione biosynthetic process
GJQ55_RS13005	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
GJQ55_RS13040	COG0488	(ABC) transporter
GJQ55_RS13050	COG1253	flavin adenine dinucleotide binding
GJQ55_RS13055	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
GJQ55_RS13060	COG4988	ABC transporter
GJQ55_RS13080	COG0220	tRNA (guanine-N7-)-methyltransferase activity
GJQ55_RS13085	COG2363	Small membrane protein
GJQ55_RS13090	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
GJQ55_RS13100	COG0668	transmembrane transport
GJQ55_RS13115	COG2959	enzyme of heme biosynthesis
GJQ55_RS13125	COG0181	hydroxymethylbilane synthase activity
GJQ55_RS13135	COG3275	phosphorelay sensor kinase activity
GJQ55_RS13140	COG0165	Argininosuccinate lyase
GJQ55_RS13150	COG3300	MHYT domain
GJQ55_RS13150	COG5001	Diguanylate cyclase
GJQ55_RS13175	COG0355	proton-transporting ATP synthase activity, rotational mechanism
GJQ55_RS13180	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
GJQ55_RS13185	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
GJQ55_RS13190	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GJQ55_RS13200	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
GJQ55_RS13210	COG0356	it plays a direct role in the translocation of protons across the membrane
GJQ55_RS13220	COG1475	DNA binding
GJQ55_RS13225	COG1192	Involved in chromosome partitioning
GJQ55_RS13235	COG0477	Major facilitator Superfamily
GJQ55_RS13275	COG0445	tRNA wobble uridine modification
GJQ55_RS13300	COG3038	cytochrome b561
GJQ55_RS13315	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GJQ55_RS13320	COG0706	membrane insertase activity
GJQ55_RS13325	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
GJQ55_RS13330	COG0594	ribonuclease P activity
GJQ55_RS13335	COG0230	Belongs to the bacterial ribosomal protein bL34 family