locus-tag class description VA249_RS00005 PF00308 Bacterial dnaA protein VA249_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix VA249_RS00005 PF11638 DnaA N-terminal domain VA249_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain VA249_RS00010 PF02767 DNA polymerase III beta subunit, central domain VA249_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain VA249_RS00015 PF02463 RecF/RecN/SMC N terminal domain VA249_RS00020 PF01751 Toprim domain VA249_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS00020 PF18053 DNA gyrase B subunit insert domain VA249_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus VA249_RS00020 PF00204 DNA gyrase B VA249_RS00025 PF00011 Hsp20/alpha crystallin family VA249_RS00030 PF00155 Aminotransferase class I and II VA249_RS00050 PF04972 BON domain VA249_RS00050 PF00263 Bacterial type II and III secretion system protein VA249_RS00050 PF13629 Pilus formation protein N terminal region VA249_RS00065 PF00437 Type II/IV secretion system protein VA249_RS00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS00110 PF00486 Transcriptional regulatory protein, C terminal VA249_RS00110 PF00072 Response regulator receiver domain VA249_RS00115 PF05746 DALR anticodon binding domain VA249_RS00115 PF02092 Glycyl-tRNA synthetase beta subunit VA249_RS00120 PF02091 Glycyl-tRNA synthetase alpha subunit VA249_RS00125 PF01169 Uncharacterized protein family UPF0016 VA249_RS00135 PF01206 Sulfurtransferase TusA VA249_RS00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS00145 PF03466 LysR substrate binding domain VA249_RS00150 PF00107 Zinc-binding dehydrogenase VA249_RS00150 PF08240 Alcohol dehydrogenase GroES-like domain VA249_RS00155 PF00108 Thiolase, N-terminal domain VA249_RS00155 PF02803 Thiolase, C-terminal domain VA249_RS00160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VA249_RS00160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VA249_RS00160 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS00165 PF09186 Domain of unknown function (DUF1949) VA249_RS00165 PF01205 Uncharacterized protein family UPF0029 VA249_RS00170 PF02386 Cation transport protein VA249_RS00175 PF12724 Flavodoxin domain VA249_RS00220 PF03466 LysR substrate binding domain VA249_RS00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS00225 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VA249_RS00225 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VA249_RS00230 PF04380 Membrane fusogenic activity VA249_RS00235 PF00873 AcrB/AcrD/AcrF family VA249_RS00240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS00245 PF00440 Bacterial regulatory proteins, tetR family VA249_RS00245 PF08359 YsiA-like protein, C-terminal region VA249_RS00250 PF00580 UvrD/REP helicase N-terminal domain VA249_RS00250 PF13361 UvrD-like helicase C-terminal domain VA249_RS00255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA249_RS00290 PF00005 ABC transporter VA249_RS00290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS00295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS00300 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS00305 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS00305 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_RS00335 PF00069 Protein kinase domain VA249_RS00340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_RS00340 PF00356 Bacterial regulatory proteins, lacI family VA249_RS00345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS00345 PF03466 LysR substrate binding domain VA249_RS00350 PF00893 Small Multidrug Resistance protein VA249_RS00355 PF00893 Small Multidrug Resistance protein VA249_RS00360 PF00920 Dehydratase family VA249_RS00365 PF01202 Shikimate kinase VA249_RS00370 PF02447 GntP family permease VA249_RS00375 PF01081 KDPG and KHG aldolase VA249_RS00380 PF01042 Endoribonuclease L-PSP VA249_RS00385 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_RS00390 PF00375 Sodium:dicarboxylate symporter family VA249_RS00400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_RS00400 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS00405 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VA249_RS00410 PF01432 Peptidase family M3 VA249_RS00415 PF01037 Lrp/AsnC ligand binding domain VA249_RS00420 PF04445 Putative SAM-dependent methyltransferase VA249_RS00430 PF00892 EamA-like transporter family VA249_RS00435 PF00582 Universal stress protein family VA249_RS00440 PF00210 Ferritin-like domain VA249_RS00445 PF10625 Universal stress protein B (UspB) VA249_RS00455 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS00455 PF00563 EAL domain VA249_RS00455 PF03707 Bacterial signalling protein N terminal repeat VA249_RS00465 PF02646 RmuC family VA249_RS00470 PF01209 ubiE/COQ5 methyltransferase family VA249_RS00475 PF02036 SCP-2 sterol transfer family VA249_RS00480 PF03109 ABC1 family VA249_RS00485 PF02416 mttA/Hcf106 family VA249_RS00490 PF02416 mttA/Hcf106 family VA249_RS00495 PF00902 Sec-independent protein translocase protein (TatC) VA249_RS00500 PF01026 TatD related DNase VA249_RS00505 PF00490 Delta-aminolevulinic acid dehydratase VA249_RS00515 PF01612 3'-5' exonuclease VA249_RS00515 PF00476 DNA polymerase family A VA249_RS00515 PF01367 5'-3' exonuclease, C-terminal SAM fold VA249_RS00515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VA249_RS00520 PF01926 50S ribosome-binding GTPase VA249_RS00525 PF00034 Cytochrome c VA249_RS00535 PF04220 Der GTPase activator (YihI) VA249_RS00540 PF10675 Protein of unknown function (DUF2489) VA249_RS00545 PF06969 HemN C-terminal domain VA249_RS00545 PF04055 Radical SAM superfamily VA249_RS00550 PF00962 Adenosine/AMP deaminase VA249_RS00555 PF00563 EAL domain VA249_RS00555 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS00555 PF03707 Bacterial signalling protein N terminal repeat VA249_RS00560 PF00158 Sigma-54 interaction domain VA249_RS00560 PF02954 Bacterial regulatory protein, Fis family VA249_RS00560 PF00072 Response regulator receiver domain VA249_RS00565 PF00989 PAS fold VA249_RS00565 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS00565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS00575 PF03951 Glutamine synthetase, beta-Grasp domain VA249_RS00575 PF00120 Glutamine synthetase, catalytic domain VA249_RS00580 PF00679 Elongation factor G C-terminus VA249_RS00580 PF00009 Elongation factor Tu GTP binding domain VA249_RS00580 PF03144 Elongation factor Tu domain 2 VA249_RS00595 PF03631 Virulence factor BrkB VA249_RS00600 PF02580 D-Tyr-tRNA(Tyr) deacylase VA249_RS00605 PF09500 Putative thioesterase (yiiD_Cterm) VA249_RS00605 PF00583 Acetyltransferase (GNAT) family VA249_RS00615 PF01293 Phosphoenolpyruvate carboxykinase VA249_RS00620 PF01430 Hsp33 protein VA249_RS00625 PF01479 S4 domain VA249_RS00630 PF11356 Type II secretion system protein C VA249_RS00635 PF03958 Bacterial type II/III secretion system short domain VA249_RS00635 PF00263 Bacterial type II and III secretion system protein VA249_RS00640 PF00437 Type II/IV secretion system protein VA249_RS00650 PF08334 Type II secretion system (T2SS), protein G VA249_RS00650 PF07963 Prokaryotic N-terminal methylation motif VA249_RS00655 PF12019 Type II transport protein GspH VA249_RS00660 PF02501 Type II secretion system (T2SS), protein I VA249_RS00660 PF07963 Prokaryotic N-terminal methylation motif VA249_RS00665 PF11612 Type II secretion system (T2SS), protein J VA249_RS00665 PF07963 Prokaryotic N-terminal methylation motif VA249_RS00670 PF03934 Type II secretion system (T2SS), protein K VA249_RS00675 PF05134 Type II secretion system (T2SS), protein L VA249_RS00675 PF12693 GspL periplasmic domain VA249_RS00680 PF04612 Type II secretion system (T2SS), protein M VA249_RS00685 PF01203 Type II secretion system (T2SS), protein N VA249_RS00690 PF00459 Inositol monophosphatase family VA249_RS00695 PF00293 NUDIX domain VA249_RS00700 PF01106 NifU-like domain VA249_RS00700 PF01521 Iron-sulphur cluster biosynthesis VA249_RS00705 PF00156 Phosphoribosyl transferase domain VA249_RS00710 PF00561 alpha/beta hydrolase fold VA249_RS00720 PF16921 Tex protein YqgF-like domain VA249_RS00720 PF09371 Tex-like protein N-terminal domain VA249_RS00720 PF00575 S1 RNA binding domain VA249_RS00720 PF17674 HHH domain VA249_RS00730 PF01272 Transcription elongation factor, GreA/GreB, C-term VA249_RS00730 PF03449 Transcription elongation factor, N-terminal VA249_RS00735 PF00486 Transcriptional regulatory protein, C terminal VA249_RS00735 PF00072 Response regulator receiver domain VA249_RS00740 PF00672 HAMP domain VA249_RS00740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS00740 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS00745 PF00860 Permease family VA249_RS00750 PF00326 Prolyl oligopeptidase family VA249_RS00750 PF07676 WD40-like Beta Propeller Repeat VA249_RS00755 PF17191 RecG wedge domain VA249_RS00755 PF00271 Helicase conserved C-terminal domain VA249_RS00755 PF00270 DEAD/DEAH box helicase VA249_RS00760 PF00588 SpoU rRNA Methylase family VA249_RS00760 PF12105 SpoU, rRNA methylase, C-terminal VA249_RS00765 PF02824 TGS domain VA249_RS00765 PF04607 Region found in RelA / SpoT proteins VA249_RS00765 PF13291 ACT domain VA249_RS00770 PF01192 RNA polymerase Rpb6 VA249_RS00775 PF00625 Guanylate kinase VA249_RS00795 PF02472 Biopolymer transport protein ExbD/TolR VA249_RS00800 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS00815 PF07715 TonB-dependent Receptor Plug Domain VA249_RS00815 PF00593 TonB dependent receptor VA249_RS00820 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS00825 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS00825 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_RS00830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS00835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS00835 PF00005 ABC transporter VA249_RS00840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS00840 PF00005 ABC transporter VA249_RS00855 PF00892 EamA-like transporter family VA249_RS00870 PF04138 GtrA-like protein VA249_RS00875 PF00535 Glycosyl transferase family 2 VA249_RS00880 PF08340 Domain of unknown function (DUF1732) VA249_RS00880 PF03755 YicC-like family, N-terminal region VA249_RS00885 PF01138 3' exoribonuclease family, domain 1 VA249_RS00885 PF03725 3' exoribonuclease family, domain 2 VA249_RS00890 PF00156 Phosphoribosyl transferase domain VA249_RS00895 PF03279 Bacterial lipid A biosynthesis acyltransferase VA249_RS00900 PF00440 Bacterial regulatory proteins, tetR family VA249_RS00905 PF04127 DNA / pantothenate metabolism flavoprotein VA249_RS00905 PF02441 Flavoprotein VA249_RS00910 PF04002 RadC-like JAB domain VA249_RS00915 PF00830 Ribosomal L28 family VA249_RS00920 PF00471 Ribosomal protein L33 VA249_RS00930 PF06827 Zinc finger found in FPG and IleRS VA249_RS00930 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VA249_RS00930 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VA249_RS00940 PF01467 Cytidylyltransferase-like VA249_RS00945 PF05686 Glycosyl transferase family 90 VA249_RS00950 PF00535 Glycosyl transferase family 2 VA249_RS00955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VA249_RS00960 PF01219 Prokaryotic diacylglycerol kinase VA249_RS00970 PF16363 GDP-mannose 4,6 dehydratase VA249_RS00975 PF00483 Nucleotidyl transferase VA249_RS00980 PF05523 WxcM-like, C-terminal VA249_RS01000 PF00501 AMP-binding enzyme VA249_RS01000 PF13193 AMP-binding enzyme C-terminal domain VA249_RS01005 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VA249_RS01010 PF00535 Glycosyl transferase family 2 VA249_RS01030 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VA249_RS01035 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VA249_RS01040 PF03279 Bacterial lipid A biosynthesis acyltransferase VA249_RS01045 PF01370 NAD dependent epimerase/dehydratase family VA249_RS01050 PF06082 Exopolysaccharide biosynthesis protein YbjH VA249_RS01090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VA249_RS01090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA249_RS01095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA249_RS01095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA249_RS01095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA249_RS01100 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS01105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VA249_RS01125 PF02350 UDP-N-acetylglucosamine 2-epimerase VA249_RS01140 PF01565 FAD binding domain VA249_RS01140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VA249_RS01150 PF00535 Glycosyl transferase family 2 VA249_RS01155 PF01370 NAD dependent epimerase/dehydratase family VA249_RS01160 PF02397 Bacterial sugar transferase VA249_RS01165 PF02719 Polysaccharide biosynthesis protein VA249_RS01170 PF10996 Beta-Casp domain VA249_RS01170 PF00753 Metallo-beta-lactamase superfamily VA249_RS01170 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VA249_RS01175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA249_RS01175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA249_RS01175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA249_RS01180 PF01370 NAD dependent epimerase/dehydratase family VA249_RS01190 PF00121 Triosephosphate isomerase VA249_RS01210 PF00455 DeoR C terminal sensor domain VA249_RS01210 PF08220 DeoR-like helix-turn-helix domain VA249_RS01215 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VA249_RS01220 PF06005 Cell division protein ZapB VA249_RS01225 PF03737 Aldolase/RraA VA249_RS01230 PF01040 UbiA prenyltransferase family VA249_RS01235 PF07724 AAA domain (Cdc48 subfamily) VA249_RS01235 PF00004 ATPase family associated with various cellular activities (AAA) VA249_RS01240 PF00227 Proteasome subunit VA249_RS01250 PF00356 Bacterial regulatory proteins, lacI family VA249_RS01255 PF00270 DEAD/DEAH box helicase VA249_RS01255 PF00271 Helicase conserved C-terminal domain VA249_RS01255 PF18074 Primosomal protein N C-terminal domain VA249_RS01255 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VA249_RS01255 PF17764 3′ DNA-binding domain (3′BD) VA249_RS01260 PF01197 Ribosomal protein L31 VA249_RS01265 PF00338 Ribosomal protein S10p/S20e VA249_RS01270 PF00297 Ribosomal protein L3 VA249_RS01275 PF00573 Ribosomal protein L4/L1 family VA249_RS01280 PF00276 Ribosomal protein L23 VA249_RS01285 PF03947 Ribosomal Proteins L2, C-terminal domain VA249_RS01285 PF00181 Ribosomal Proteins L2, RNA binding domain VA249_RS01290 PF00203 Ribosomal protein S19 VA249_RS01295 PF00237 Ribosomal protein L22p/L17e VA249_RS01300 PF07650 KH domain VA249_RS01300 PF00189 Ribosomal protein S3, C-terminal domain VA249_RS01305 PF00252 Ribosomal protein L16p/L10e VA249_RS01310 PF00831 Ribosomal L29 protein VA249_RS01315 PF00366 Ribosomal protein S17 VA249_RS01320 PF00238 Ribosomal protein L14p/L23e VA249_RS01325 PF00467 KOW motif VA249_RS01325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VA249_RS01330 PF00281 Ribosomal protein L5 VA249_RS01330 PF00673 ribosomal L5P family C-terminus VA249_RS01335 PF00253 Ribosomal protein S14p/S29e VA249_RS01340 PF00410 Ribosomal protein S8 VA249_RS01345 PF00347 Ribosomal protein L6 VA249_RS01350 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VA249_RS01355 PF00333 Ribosomal protein S5, N-terminal domain VA249_RS01355 PF03719 Ribosomal protein S5, C-terminal domain VA249_RS01360 PF00327 Ribosomal protein L30p/L7e VA249_RS01365 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VA249_RS01370 PF00344 SecY translocase VA249_RS01375 PF00444 Ribosomal protein L36 VA249_RS01380 PF00416 Ribosomal protein S13/S18 VA249_RS01385 PF00411 Ribosomal protein S11 VA249_RS01390 PF00163 Ribosomal protein S4/S9 N-terminal domain VA249_RS01390 PF01479 S4 domain VA249_RS01395 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VA249_RS01395 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VA249_RS01395 PF01000 RNA polymerase Rpb3/RpoA insert domain VA249_RS01400 PF01196 Ribosomal protein L17 VA249_RS01410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_RS01410 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA249_RS01420 PF13673 Acetyltransferase (GNAT) domain VA249_RS01425 PF03880 DbpA RNA binding domain VA249_RS01425 PF00270 DEAD/DEAH box helicase VA249_RS01425 PF00271 Helicase conserved C-terminal domain VA249_RS01435 PF02872 5'-nucleotidase, C-terminal domain VA249_RS01435 PF00149 Calcineurin-like phosphoesterase VA249_RS01440 PF10414 Sirohaem synthase dimerisation region VA249_RS01440 PF14824 Sirohaem biosynthesis protein central VA249_RS01440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_RS01445 PF01507 Phosphoadenosine phosphosulfate reductase family VA249_RS01450 PF00009 Elongation factor Tu GTP binding domain VA249_RS01455 PF02080 TrkA-C domain VA249_RS01455 PF03600 Citrate transporter VA249_RS01480 PF00005 ABC transporter VA249_RS01490 PF10795 Protein of unknown function (DUF2607) VA249_RS01495 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VA249_RS01505 PF01625 Peptide methionine sulfoxide reductase VA249_RS01510 PF01103 Surface antigen VA249_RS01510 PF17243 POTRA domain TamA domain 1 VA249_RS01510 PF07244 Surface antigen variable number repeat VA249_RS01515 PF04357 TamB, inner membrane protein subunit of TAM complex VA249_RS01520 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VA249_RS01525 PF00719 Inorganic pyrophosphatase VA249_RS01530 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VA249_RS01535 PF01225 Mur ligase family, catalytic domain VA249_RS01535 PF08245 Mur ligase middle domain VA249_RS01535 PF02875 Mur ligase family, glutamate ligase domain VA249_RS01540 PF02441 Flavoprotein VA249_RS01550 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS01555 PF00005 ABC transporter VA249_RS01570 PF16868 NMT1-like family VA249_RS01575 PF01316 Arginine repressor, DNA binding domain VA249_RS01575 PF02863 Arginine repressor, C-terminal domain VA249_RS01580 PF00056 lactate/malate dehydrogenase, NAD binding domain VA249_RS01580 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VA249_RS01590 PF00348 Polyprenyl synthetase VA249_RS01595 PF00829 Ribosomal prokaryotic L21 protein VA249_RS01600 PF01016 Ribosomal L27 protein VA249_RS01605 PF01926 50S ribosome-binding GTPase VA249_RS01605 PF01018 GTP1/OBG VA249_RS01615 PF06738 Putative threonine/serine exporter VA249_RS01620 PF12821 Threonine/Serine exporter, ThrE VA249_RS01625 PF00186 Dihydrofolate reductase VA249_RS01635 PF04379 ApaG domain VA249_RS01640 PF00398 Ribosomal RNA adenine dimethylase VA249_RS01645 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VA249_RS01650 PF09312 SurA N-terminal domain VA249_RS01655 PF04453 LPS transport system D VA249_RS01655 PF03968 OstA-like protein VA249_RS01660 PF05099 Tellurite resistance protein TerB VA249_RS01660 PF00226 DnaJ domain VA249_RS01670 PF00694 Aconitase C-terminal domain VA249_RS01675 PF00330 Aconitase family (aconitate hydratase) VA249_RS01680 PF00180 Isocitrate/isopropylmalate dehydrogenase VA249_RS01685 PF00682 HMGL-like VA249_RS01685 PF08502 LeuA allosteric (dimerisation) domain VA249_RS01695 PF01569 PAP2 superfamily VA249_RS01705 PF03466 LysR substrate binding domain VA249_RS01705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS01710 PF00501 AMP-binding enzyme VA249_RS01715 PF00205 Thiamine pyrophosphate enzyme, central domain VA249_RS01715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_RS01715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_RS01720 PF10369 Small subunit of acetolactate synthase VA249_RS01725 PF07694 5TMR of 5TMR-LYT VA249_RS01725 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS01735 PF00224 Pyruvate kinase, barrel domain VA249_RS01735 PF02887 Pyruvate kinase, alpha/beta domain VA249_RS01740 PF00455 DeoR C terminal sensor domain VA249_RS01740 PF08220 DeoR-like helix-turn-helix domain VA249_RS01745 PF01380 SIS domain VA249_RS01770 PF00589 Phage integrase family VA249_RS01770 PF02899 Phage integrase, N-terminal SAM-like domain VA249_RS01815 PF04539 Sigma-70 region 3 VA249_RS01815 PF03979 Sigma-70 factor, region 1.1 VA249_RS01815 PF00140 Sigma-70 factor, region 1.2 VA249_RS01815 PF04542 Sigma-70 region 2 VA249_RS01815 PF04545 Sigma-70, region 4 VA249_RS01815 PF04546 Sigma-70, non-essential region VA249_RS01820 PF10410 DnaB-helicase binding domain of primase VA249_RS01820 PF08278 DNA primase DnaG DnaB-binding VA249_RS01820 PF08275 DNA primase catalytic core, N-terminal domain VA249_RS01820 PF01807 CHC2 zinc finger VA249_RS01825 PF09424 Yqey-like protein VA249_RS01830 PF01165 Ribosomal protein S21 VA249_RS01835 PF00814 Glycoprotease family VA249_RS01840 PF00561 alpha/beta hydrolase fold VA249_RS01845 PF02660 Glycerol-3-phosphate acyltransferase VA249_RS01850 PF02152 Dihydroneopterin aldolase VA249_RS01855 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VA249_RS01860 PF02673 Bacitracin resistance protein BacA VA249_RS01865 PF01743 Poly A polymerase head domain VA249_RS01865 PF12627 Probable RNA and SrmB- binding site of polymerase A VA249_RS01865 PF01966 HD domain VA249_RS01870 PF13401 AAA domain VA249_RS01870 PF01471 Putative peptidoglycan binding domain VA249_RS01880 PF08239 Bacterial SH3 domain VA249_RS01885 PF01384 Phosphate transporter family VA249_RS01890 PF01865 Protein of unknown function DUF47 VA249_RS01895 PF01928 CYTH domain VA249_RS01900 PF07885 Ion channel VA249_RS01905 PF00672 HAMP domain VA249_RS01905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS01905 PF02743 Cache domain VA249_RS01910 PF08335 GlnD PII-uridylyltransferase VA249_RS01910 PF03710 Glutamate-ammonia ligase adenylyltransferase VA249_RS01915 PF01467 Cytidylyltransferase-like VA249_RS01915 PF00294 pfkB family carbohydrate kinase VA249_RS01920 PF02321 Outer membrane efflux protein VA249_RS01925 PF00293 NUDIX domain VA249_RS01930 PF06853 Protein of unknown function (DUF1249) VA249_RS01935 PF00149 Calcineurin-like phosphoesterase VA249_RS01940 PF05728 Uncharacterised protein family (UPF0227) VA249_RS01945 PF00204 DNA gyrase B VA249_RS01945 PF01751 Toprim domain VA249_RS01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS01945 PF00986 DNA gyrase B subunit, carboxyl terminus VA249_RS01950 PF03989 DNA gyrase C-terminal domain, beta-propeller VA249_RS01950 PF00521 DNA gyrase/topoisomerase IV, subunit A VA249_RS01955 PF13180 PDZ domain VA249_RS01960 PF00595 PDZ domain VA249_RS01965 PF06295 Protein of unknown function (DUF1043) VA249_RS01970 PF03969 AFG1-like ATPase VA249_RS01975 PF00572 Ribosomal protein L13 VA249_RS01980 PF00380 Ribosomal protein S9/S16 VA249_RS01985 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VA249_RS01985 PF00355 Rieske [2Fe-2S] domain VA249_RS01990 PF00033 Cytochrome b/b6/petB VA249_RS01990 PF00032 Cytochrome b(C-terminal)/b6/petD VA249_RS01995 PF02167 Cytochrome C1 family VA249_RS02000 PF02798 Glutathione S-transferase, N-terminal domain VA249_RS02000 PF00043 Glutathione S-transferase, C-terminal domain VA249_RS02005 PF04386 Stringent starvation protein B VA249_RS02010 PF04972 BON domain VA249_RS02015 PF13580 SIS domain VA249_RS02020 PF02021 Uncharacterised protein family UPF0102 VA249_RS02025 PF04348 LppC putative lipoprotein VA249_RS02030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_RS02040 PF01795 MraW methylase family VA249_RS02045 PF04999 Cell division protein FtsL VA249_RS02050 PF03717 Penicillin-binding Protein dimerisation domain VA249_RS02050 PF00905 Penicillin binding protein transpeptidase domain VA249_RS02055 PF02875 Mur ligase family, glutamate ligase domain VA249_RS02055 PF01225 Mur ligase family, catalytic domain VA249_RS02055 PF08245 Mur ligase middle domain VA249_RS02060 PF01225 Mur ligase family, catalytic domain VA249_RS02060 PF02875 Mur ligase family, glutamate ligase domain VA249_RS02060 PF08245 Mur ligase middle domain VA249_RS02065 PF00953 Glycosyl transferase family 4 VA249_RS02065 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VA249_RS02070 PF02875 Mur ligase family, glutamate ligase domain VA249_RS02070 PF08245 Mur ligase middle domain VA249_RS02075 PF01098 Cell cycle protein VA249_RS02080 PF04101 Glycosyltransferase family 28 C-terminal domain VA249_RS02080 PF03033 Glycosyltransferase family 28 N-terminal domain VA249_RS02085 PF01225 Mur ligase family, catalytic domain VA249_RS02085 PF02875 Mur ligase family, glutamate ligase domain VA249_RS02085 PF08245 Mur ligase middle domain VA249_RS02090 PF03799 Cell division protein FtsQ VA249_RS02090 PF08478 POTRA domain, FtsQ-type VA249_RS02095 PF02491 SHS2 domain inserted in FTSA VA249_RS02100 PF00091 Tubulin/FtsZ family, GTPase domain VA249_RS02100 PF12327 FtsZ family, C-terminal domain VA249_RS02105 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VA249_RS02115 PF02810 SEC-C motif VA249_RS02115 PF07516 SecA Wing and Scaffold domain VA249_RS02115 PF07517 SecA DEAD-like domain VA249_RS02115 PF01043 SecA preprotein cross-linking domain VA249_RS02120 PF00293 NUDIX domain VA249_RS02125 PF05173 Dihydrodipicolinate reductase, C-terminus VA249_RS02125 PF01113 Dihydrodipicolinate reductase, N-terminus VA249_RS02130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VA249_RS02130 PF00117 Glutamine amidotransferase class-I VA249_RS02135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA249_RS02135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VA249_RS02135 PF02142 MGS-like domain VA249_RS02140 PF01925 Sulfite exporter TauE/SafE VA249_RS02145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS02145 PF03466 LysR substrate binding domain VA249_RS02150 PF03458 UPF0126 domain VA249_RS02155 PF01497 Periplasmic binding protein VA249_RS02165 PF01048 Phosphorylase superfamily VA249_RS02175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA249_RS02175 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS02180 PF00310 Glutamine amidotransferases class-II VA249_RS02180 PF04898 Glutamate synthase central domain VA249_RS02180 PF01645 Conserved region in glutamate synthase VA249_RS02180 PF01493 GXGXG motif VA249_RS02185 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS02185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA249_RS02190 PF00310 Glutamine amidotransferases class-II VA249_RS02190 PF04898 Glutamate synthase central domain VA249_RS02190 PF01645 Conserved region in glutamate synthase VA249_RS02190 PF01493 GXGXG motif VA249_RS02195 PF04055 Radical SAM superfamily VA249_RS02195 PF16199 Radical_SAM C-terminal domain VA249_RS02200 PF00072 Response regulator receiver domain VA249_RS02200 PF18415 Histidine kinase receptor ArcB trans-membrane domain VA249_RS02200 PF01627 Hpt domain VA249_RS02200 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS02200 PF00989 PAS fold VA249_RS02210 PF00072 Response regulator receiver domain VA249_RS02210 PF00486 Transcriptional regulatory protein, C terminal VA249_RS02220 PF03737 Aldolase/RraA VA249_RS02230 PF03447 Homoserine dehydrogenase, NAD binding domain VA249_RS02230 PF13840 ACT domain VA249_RS02230 PF00696 Amino acid kinase family VA249_RS02230 PF01842 ACT domain VA249_RS02230 PF00742 Homoserine dehydrogenase VA249_RS02235 PF08544 GHMP kinases C terminal VA249_RS02235 PF00288 GHMP kinases N terminal domain VA249_RS02240 PF00291 Pyridoxal-phosphate dependent enzyme VA249_RS02240 PF14821 Threonine synthase N terminus VA249_RS02245 PF01228 Glycine radical VA249_RS02250 PF01261 Xylose isomerase-like TIM barrel VA249_RS02255 PF03167 Uracil DNA glycosylase superfamily VA249_RS02270 PF01235 Sodium:alanine symporter family VA249_RS02300 PF03883 Peroxide stress protein YaaA VA249_RS02305 PF00270 DEAD/DEAH box helicase VA249_RS02305 PF00271 Helicase conserved C-terminal domain VA249_RS02310 PF05175 Methyltransferase small domain VA249_RS02315 PF05525 Branched-chain amino acid transport protein VA249_RS02320 PF00258 Flavodoxin VA249_RS02325 PF02899 Phage integrase, N-terminal SAM-like domain VA249_RS02325 PF00589 Phage integrase family VA249_RS02330 PF13098 Thioredoxin-like domain VA249_RS02330 PF10411 Disulfide bond isomerase protein N-terminus VA249_RS02345 PF01336 OB-fold nucleic acid binding domain VA249_RS02345 PF00152 tRNA synthetases class II (D, K and N) VA249_RS02350 PF00158 Sigma-54 interaction domain VA249_RS02350 PF00072 Response regulator receiver domain VA249_RS02350 PF02954 Bacterial regulatory protein, Fis family VA249_RS02360 PF00248 Aldo/keto reductase family VA249_RS02370 PF02976 DNA mismatch repair enzyme MutH VA249_RS02375 PF00293 NUDIX domain VA249_RS02380 PF05524 PEP-utilising enzyme, N-terminal VA249_RS02380 PF01590 GAF domain VA249_RS02380 PF00391 PEP-utilising enzyme, mobile domain VA249_RS02380 PF02896 PEP-utilising enzyme, TIM barrel domain VA249_RS02385 PF01925 Sulfite exporter TauE/SafE VA249_RS02390 PF01790 Prolipoprotein diacylglyceryl transferase VA249_RS02395 PF00303 Thymidylate synthase VA249_RS02400 PF02690 Na+/Pi-cotransporter VA249_RS02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS02405 PF03466 LysR substrate binding domain VA249_RS02410 PF01022 Bacterial regulatory protein, arsR family VA249_RS02415 PF01649 Ribosomal protein S20 VA249_RS02420 PF03023 Lipid II flippase MurJ VA249_RS02425 PF06574 FAD synthetase VA249_RS02425 PF01687 Riboflavin kinase VA249_RS02430 PF08264 Anticodon-binding domain of tRNA VA249_RS02430 PF00133 tRNA synthetases class I (I, L, M and V) VA249_RS02430 PF06827 Zinc finger found in FPG and IleRS VA249_RS02435 PF01252 Signal peptidase (SPase) II VA249_RS02440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_RS02445 PF02401 LytB protein VA249_RS02450 PF04397 LytTr DNA-binding domain VA249_RS02450 PF00072 Response regulator receiver domain VA249_RS02455 PF07694 5TMR of 5TMR-LYT VA249_RS02455 PF06580 Histidine kinase VA249_RS02460 PF02554 Carbon starvation protein CstA VA249_RS02475 PF01380 SIS domain VA249_RS02480 PF03702 Anhydro-N-acetylmuramic acid kinase VA249_RS02485 PF00933 Glycosyl hydrolase family 3 N terminal domain VA249_RS02490 PF00793 DAHP synthetase I family VA249_RS02495 PF01817 Chorismate mutase type II VA249_RS02495 PF02153 Prephenate dehydrogenase VA249_RS02500 PF01551 Peptidase family M23 VA249_RS02500 PF04225 Opacity-associated protein A LysM-like domain VA249_RS02505 PF07238 PilZ domain VA249_RS02510 PF12848 ABC transporter VA249_RS02510 PF00005 ABC transporter VA249_RS02515 PF01464 Transglycosylase SLT domain VA249_RS02515 PF14718 Soluble lytic murein transglycosylase L domain VA249_RS02520 PF01371 Trp repressor protein VA249_RS02525 PF01931 Protein of unknown function DUF84 VA249_RS02530 PF01817 Chorismate mutase type II VA249_RS02530 PF00800 Prephenate dehydratase VA249_RS02535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VA249_RS02540 PF01464 Transglycosylase SLT domain VA249_RS02545 PF13525 Outer membrane lipoprotein VA249_RS02550 PF01479 S4 domain VA249_RS02550 PF00849 RNA pseudouridylate synthase VA249_RS02555 PF02578 Multi-copper polyphenol oxidoreductase laccase VA249_RS02560 PF07724 AAA domain (Cdc48 subfamily) VA249_RS02560 PF17871 AAA lid domain VA249_RS02560 PF00004 ATPase family associated with various cellular activities (AAA) VA249_RS02560 PF02861 Clp amino terminal domain, pathogenicity island component VA249_RS02560 PF10431 C-terminal, D2-small domain, of ClpB protein VA249_RS02645 PF03411 Penicillin-insensitive murein endopeptidase VA249_RS02655 PF00037 4Fe-4S binding domain VA249_RS02660 PF01136 Peptidase family U32 VA249_RS02660 PF16325 Peptidase family U32 C-terminal domain VA249_RS02665 PF04381 Putative exonuclease, RdgC VA249_RS02670 PF00072 Response regulator receiver domain VA249_RS02670 PF00486 Transcriptional regulatory protein, C terminal VA249_RS02675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS02675 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS02675 PF00989 PAS fold VA249_RS02675 PF11808 Phosphate regulon sensor protein PhoR VA249_RS02680 PF12849 PBP superfamily domain VA249_RS02690 PF02503 Polyphosphate kinase middle domain VA249_RS02690 PF13090 Polyphosphate kinase C-terminal domain 2 VA249_RS02690 PF17941 Polyphosphate kinase C-terminal domain 1 VA249_RS02690 PF13089 Polyphosphate kinase N-terminal domain VA249_RS02695 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS02700 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS02705 PF00005 ABC transporter VA249_RS02710 PF01895 PhoU domain VA249_RS02720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS02720 PF03466 LysR substrate binding domain VA249_RS02725 PF03976 Polyphosphate kinase 2 (PPK2) VA249_RS02730 PF03932 CutC family VA249_RS02735 PF10417 C-terminal domain of 1-Cys peroxiredoxin VA249_RS02735 PF00578 AhpC/TSA family VA249_RS02740 PF03466 LysR substrate binding domain VA249_RS02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS02745 PF01274 Malate synthase VA249_RS02750 PF00463 Isocitrate lyase family VA249_RS02755 PF00571 CBS domain VA249_RS02765 PF02547 Queuosine biosynthesis protein VA249_RS02770 PF01702 Queuine tRNA-ribosyltransferase VA249_RS02775 PF02699 Preprotein translocase subunit VA249_RS02780 PF13721 SecD export protein N-terminal TM region VA249_RS02780 PF02355 Protein export membrane protein VA249_RS02780 PF07549 SecD/SecF GG Motif VA249_RS02785 PF02355 Protein export membrane protein VA249_RS02785 PF07549 SecD/SecF GG Motif VA249_RS02790 PF00459 Inositol monophosphatase family VA249_RS02795 PF00588 SpoU rRNA Methylase family VA249_RS02800 PF02082 Transcriptional regulator VA249_RS02805 PF00266 Aminotransferase class-V VA249_RS02810 PF01592 NifU-like N terminal domain VA249_RS02815 PF01521 Iron-sulphur cluster biosynthesis VA249_RS02820 PF00226 DnaJ domain VA249_RS02820 PF07743 HSCB C-terminal oligomerisation domain VA249_RS02825 PF00012 Hsp70 protein VA249_RS02830 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_RS02835 PF04384 Iron-sulphur cluster assembly VA249_RS02840 PF12404 Peptidase VA249_RS02840 PF00883 Cytosol aminopeptidase family, catalytic domain VA249_RS02845 PF00334 Nucleoside diphosphate kinase VA249_RS02850 PF04055 Radical SAM superfamily VA249_RS02855 PF13464 Domain of unknown function (DUF4115) VA249_RS02860 PF04551 GcpE protein VA249_RS02865 PF13393 Histidyl-tRNA synthetase VA249_RS02865 PF03129 Anticodon binding domain VA249_RS02870 PF09976 Tetratricopeptide repeat-like domain VA249_RS02875 PF13360 PQQ-like domain VA249_RS02880 PF01926 50S ribosome-binding GTPase VA249_RS02880 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VA249_RS02895 PF13742 OB-fold nucleic acid binding domain VA249_RS02895 PF02601 Exonuclease VII, large subunit VA249_RS02900 PF00571 CBS domain VA249_RS02900 PF00478 IMP dehydrogenase / GMP reductase domain VA249_RS02905 PF00117 Glutamine amidotransferase class-I VA249_RS02905 PF00958 GMP synthase C terminal domain VA249_RS02905 PF02540 NAD synthase VA249_RS02910 PF01184 GPR1/FUN34/yaaH family VA249_RS02915 PF01235 Sodium:alanine symporter family VA249_RS02920 PF01266 FAD dependent oxidoreductase VA249_RS02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS02925 PF03466 LysR substrate binding domain VA249_RS02930 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_RS02935 PF00202 Aminotransferase class-III VA249_RS02960 PF00145 C-5 cytosine-specific DNA methylase VA249_RS02990 PF01668 SmpB protein VA249_RS02995 PF03364 Polyketide cyclase / dehydrase and lipid transport VA249_RS03000 PF03658 RnfH family Ubiquitin VA249_RS03005 PF04355 SmpA / OmlA family VA249_RS03010 PF02463 RecF/RecN/SMC N terminal domain VA249_RS03015 PF01513 ATP-NAD kinase VA249_RS03020 PF01025 GrpE VA249_RS03025 PF00375 Sodium:dicarboxylate symporter family VA249_RS03030 PF00012 Hsp70 protein VA249_RS03035 PF00226 DnaJ domain VA249_RS03035 PF01556 DnaJ C terminal domain VA249_RS03035 PF00684 DnaJ central domain VA249_RS03040 PF07963 Prokaryotic N-terminal methylation motif VA249_RS03040 PF00114 Pilin (bacterial filament) VA249_RS03065 PF03806 AbgT putative transporter family VA249_RS03070 PF14437 MafB19-like deaminase VA249_RS03075 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS03075 PF01464 Transglycosylase SLT domain VA249_RS03080 PF02769 AIR synthase related protein, C-terminal domain VA249_RS03080 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VA249_RS03080 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VA249_RS03100 PF07687 Peptidase dimerisation domain VA249_RS03100 PF01546 Peptidase family M20/M25/M40 VA249_RS03105 PF00860 Permease family VA249_RS03110 PF00156 Phosphoribosyl transferase domain VA249_RS03115 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VA249_RS03120 PF07417 Sigma factor-binding transcriptional regulator Crl VA249_RS03125 PF01472 PUA domain VA249_RS03125 PF00696 Amino acid kinase family VA249_RS03130 PF00171 Aldehyde dehydrogenase family VA249_RS03135 PF03477 ATP cone domain VA249_RS03140 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_RS03140 PF01872 RibD C-terminal domain VA249_RS03145 PF00677 Lumazine binding domain VA249_RS03155 PF00885 6,7-dimethyl-8-ribityllumazine synthase VA249_RS03160 PF01029 NusB family VA249_RS03165 PF02769 AIR synthase related protein, C-terminal domain VA249_RS03165 PF00586 AIR synthase related protein, N-terminal domain VA249_RS03170 PF04608 Phosphatidylglycerophosphatase A VA249_RS03175 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VA249_RS03175 PF02779 Transketolase, pyrimidine binding domain VA249_RS03175 PF02780 Transketolase, C-terminal domain VA249_RS03180 PF00348 Polyprenyl synthetase VA249_RS03185 PF02609 Exonuclease VII small subunit VA249_RS03190 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS03195 PF00691 OmpA family VA249_RS03195 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA249_RS03200 PF02926 THUMP domain VA249_RS03200 PF02568 Thiamine biosynthesis protein (ThiI) VA249_RS03205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS03205 PF03466 LysR substrate binding domain VA249_RS03215 PF04241 Protein of unknown function (DUF423) VA249_RS03220 PF01728 FtsJ-like methyltransferase VA249_RS03220 PF18125 RlmM ferredoxin-like domain VA249_RS03225 PF01367 5'-3' exonuclease, C-terminal SAM fold VA249_RS03225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VA249_RS03230 PF11892 Domain of unknown function (DUF3412) VA249_RS03230 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VA249_RS03230 PF03641 Possible lysine decarboxylase VA249_RS03235 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS03245 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VA249_RS03245 PF14489 QueF-like protein VA249_RS03250 PF07348 Syd protein (SUKH-2) VA249_RS03255 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VA249_RS03260 PF03180 NLPA lipoprotein VA249_RS03265 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS03270 PF00005 ABC transporter VA249_RS03270 PF09383 NIL domain VA249_RS03280 PF00356 Bacterial regulatory proteins, lacI family VA249_RS03285 PF00367 phosphotransferase system, EIIB VA249_RS03285 PF02378 Phosphotransferase system, EIIC VA249_RS03290 PF00128 Alpha amylase, catalytic domain VA249_RS03290 PF16657 Maltogenic Amylase, C-terminal domain VA249_RS03295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VA249_RS03295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VA249_RS03300 PF00464 Serine hydroxymethyltransferase VA249_RS03305 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VA249_RS03305 PF04055 Radical SAM superfamily VA249_RS03310 PF03099 Biotin/lipoate A/B protein ligase family VA249_RS03315 PF04359 Protein of unknown function (DUF493) VA249_RS03320 PF07943 Penicillin-binding protein 5, C-terminal domain VA249_RS03320 PF00768 D-alanyl-D-alanine carboxypeptidase VA249_RS03325 PF03330 Lytic transglycolase VA249_RS03325 PF05036 Sporulation related domain VA249_RS03330 PF01098 Cell cycle protein VA249_RS03335 PF03717 Penicillin-binding Protein dimerisation domain VA249_RS03335 PF00905 Penicillin binding protein transpeptidase domain VA249_RS03340 PF02590 Predicted SPOUT methyltransferase VA249_RS03350 PF06144 DNA polymerase III, delta subunit VA249_RS03350 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VA249_RS03355 PF04390 Lipopolysaccharide-assembly VA249_RS03360 PF08264 Anticodon-binding domain of tRNA VA249_RS03360 PF00133 tRNA synthetases class I (I, L, M and V) VA249_RS03360 PF13603 Leucyl-tRNA synthetase, Domain 2 VA249_RS03365 PF07295 Zinc-ribbon containing domain VA249_RS03370 PF00795 Carbon-nitrogen hydrolase VA249_RS03375 PF00571 CBS domain VA249_RS03375 PF03471 Transporter associated domain VA249_RS03380 PF02130 Uncharacterized protein family UPF0054 VA249_RS03385 PF02562 PhoH-like protein VA249_RS03390 PF00919 Uncharacterized protein family UPF0004 VA249_RS03390 PF01938 TRAM domain VA249_RS03390 PF04055 Radical SAM superfamily VA249_RS03395 PF01494 FAD binding domain VA249_RS03500 PF01926 50S ribosome-binding GTPase VA249_RS03500 PF06071 Protein of unknown function (DUF933) VA249_RS03505 PF01195 Peptidyl-tRNA hydrolase VA249_RS03510 PF14572 Phosphoribosyl synthetase-associated domain VA249_RS03510 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VA249_RS03515 PF00288 GHMP kinases N terminal domain VA249_RS03515 PF08544 GHMP kinases C terminal VA249_RS03520 PF03550 Outer membrane lipoprotein LolB VA249_RS03525 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VA249_RS03525 PF01488 Shikimate / quinate 5-dehydrogenase VA249_RS03525 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VA249_RS03530 PF00472 RF-1 domain VA249_RS03530 PF03462 PCRF domain VA249_RS03535 PF17827 PrmC N-terminal domain VA249_RS03535 PF13847 Methyltransferase domain VA249_RS03540 PF04247 Invasion gene expression up-regulator, SirB VA249_RS03545 PF13369 Transglutaminase-like superfamily VA249_RS03550 PF00793 DAHP synthetase I family VA249_RS03555 PF02872 5'-nucleotidase, C-terminal domain VA249_RS03555 PF00149 Calcineurin-like phosphoesterase VA249_RS03560 PF04073 Aminoacyl-tRNA editing domain VA249_RS03565 PF00849 RNA pseudouridylate synthase VA249_RS03565 PF01479 S4 domain VA249_RS03570 PF01713 Smr domain VA249_RS03595 PF03173 Putative carbohydrate binding domain VA249_RS03595 PF02838 Glycosyl hydrolase family 20, domain 2 VA249_RS03595 PF00728 Glycosyl hydrolase family 20, catalytic domain VA249_RS03595 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VA249_RS03615 PF00403 Heavy-metal-associated domain VA249_RS03620 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA249_RS03625 PF01389 OmpA-like transmembrane domain VA249_RS03625 PF00691 OmpA family VA249_RS03670 PF01584 CheW-like domain VA249_RS03670 PF00072 Response regulator receiver domain VA249_RS03675 PF03705 CheR methyltransferase, all-alpha domain VA249_RS03675 PF01739 CheR methyltransferase, SAM binding domain VA249_RS03680 PF00460 Flagella basal body rod protein VA249_RS03685 PF00460 Flagella basal body rod protein VA249_RS03685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS03690 PF03963 Flagellar hook capping protein - N-terminal region VA249_RS03690 PF13860 FlgD Ig-like domain VA249_RS03690 PF13861 FlgD Tudor-like domain VA249_RS03695 PF07559 Flagellar basal body protein FlaE VA249_RS03695 PF00460 Flagella basal body rod protein VA249_RS03695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS03700 PF00460 Flagella basal body rod protein VA249_RS03700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS03705 PF00460 Flagella basal body rod protein VA249_RS03705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS03710 PF02107 Flagellar L-ring protein VA249_RS03715 PF02119 Flagellar P-ring protein VA249_RS03720 PF10135 Rod binding protein VA249_RS03720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VA249_RS03725 PF07196 Flagellin hook IN motif VA249_RS03725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS03735 PF00700 Bacterial flagellin C-terminal helical region VA249_RS03735 PF07196 Flagellin hook IN motif VA249_RS03735 PF00669 Bacterial flagellin N-terminal helical region VA249_RS03740 PF00700 Bacterial flagellin C-terminal helical region VA249_RS03740 PF07196 Flagellin hook IN motif VA249_RS03740 PF00669 Bacterial flagellin N-terminal helical region VA249_RS03745 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VA249_RS03750 PF02896 PEP-utilising enzyme, TIM barrel domain VA249_RS03750 PF05524 PEP-utilising enzyme, N-terminal VA249_RS03750 PF00391 PEP-utilising enzyme, mobile domain VA249_RS03755 PF00381 PTS HPr component phosphorylation site VA249_RS03760 PF00291 Pyridoxal-phosphate dependent enzyme VA249_RS03770 PF04354 ZipA, C-terminal FtsZ-binding domain VA249_RS03775 PF00533 BRCA1 C Terminus (BRCT) domain VA249_RS03775 PF12826 Helix-hairpin-helix motif VA249_RS03775 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VA249_RS03775 PF03120 NAD-dependent DNA ligase OB-fold domain VA249_RS03775 PF01653 NAD-dependent DNA ligase adenylation domain VA249_RS03795 PF01957 NfeD-like C-terminal, partner-binding VA249_RS03800 PF16200 C-terminal region of band_7 VA249_RS03800 PF01145 SPFH domain / Band 7 family VA249_RS03805 PF00085 Thioredoxin VA249_RS03810 PF00106 short chain dehydrogenase VA249_RS03815 PF08338 Domain of unknown function (DUF1731) VA249_RS03815 PF01370 NAD dependent epimerase/dehydratase family VA249_RS03820 PF12850 Calcineurin-like phosphoesterase superfamily domain VA249_RS03835 PF17323 Trans-membrane regulatory protein ToxS VA249_RS03840 PF00486 Transcriptional regulatory protein, C terminal VA249_RS03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS03845 PF00183 Hsp90 protein VA249_RS03850 PF05191 Adenylate kinase, active site lid VA249_RS03855 PF00762 Ferrochelatase VA249_RS03860 PF00854 POT family VA249_RS03865 PF02357 Transcription termination factor nusG VA249_RS03870 PF13537 Glutamine amidotransferase domain VA249_RS03870 PF00733 Asparagine synthase VA249_RS03875 PF02254 TrkA-N domain VA249_RS03875 PF00999 Sodium/hydrogen exchanger family VA249_RS03880 PF00480 ROK family VA249_RS03880 PF01047 MarR family VA249_RS03885 PF01979 Amidohydrolase family VA249_RS03890 PF02378 Phosphotransferase system, EIIC VA249_RS03890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VA249_RS03890 PF00367 phosphotransferase system, EIIB VA249_RS03895 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VA249_RS03895 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA249_RS03900 PF01475 Ferric uptake regulator family VA249_RS03905 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_RS03905 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_RS03910 PF00258 Flavodoxin VA249_RS03920 PF12697 Alpha/beta hydrolase family VA249_RS03925 PF03925 SeqA protein C-terminal domain VA249_RS03925 PF17206 SeqA protein N-terminal domain VA249_RS03930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_RS03930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_RS03930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_RS03930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_RS03940 PF01784 NIF3 (NGG1p interacting factor 3) VA249_RS03945 PF00285 Citrate synthase, C-terminal domain VA249_RS03950 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VA249_RS03955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VA249_RS03960 PF02910 Fumarate reductase flavoprotein C-term VA249_RS03960 PF00890 FAD binding domain VA249_RS03965 PF13085 2Fe-2S iron-sulfur cluster binding domain VA249_RS03970 PF16078 2-oxoglutarate dehydrogenase N-terminus VA249_RS03970 PF16870 2-oxoglutarate dehydrogenase C-terminal VA249_RS03970 PF02779 Transketolase, pyrimidine binding domain VA249_RS03970 PF00676 Dehydrogenase E1 component VA249_RS03975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA249_RS03975 PF00364 Biotin-requiring enzyme VA249_RS03975 PF02817 e3 binding domain VA249_RS03980 PF08442 ATP-grasp domain VA249_RS03980 PF00549 CoA-ligase VA249_RS03985 PF02629 CoA binding domain VA249_RS03985 PF00549 CoA-ligase VA249_RS03990 PF00950 ABC 3 transport family VA249_RS03995 PF00005 ABC transporter VA249_RS04000 PF01297 Zinc-uptake complex component A periplasmic VA249_RS04005 PF02311 AraC-like ligand binding domain VA249_RS04005 PF12833 Helix-turn-helix domain VA249_RS04010 PF04023 FeoA domain VA249_RS04015 PF07670 Nucleoside recognition VA249_RS04015 PF02421 Ferrous iron transport protein B VA249_RS04015 PF17910 FeoB cytosolic helical domain VA249_RS04015 PF07664 Ferrous iron transport protein B C terminus VA249_RS04030 PF00750 tRNA synthetases class I (R) VA249_RS04030 PF03485 Arginyl tRNA synthetase N terminal domain VA249_RS04030 PF05746 DALR anticodon binding domain VA249_RS04035 PF06185 YecM protein VA249_RS04040 PF01842 ACT domain VA249_RS04040 PF00551 Formyl transferase VA249_RS04045 PF04851 Type III restriction enzyme, res subunit VA249_RS04045 PF13307 Helicase C-terminal domain VA249_RS04050 PF00814 Glycoprotease family VA249_RS04065 PF00561 alpha/beta hydrolase fold VA249_RS04070 PF13193 AMP-binding enzyme C-terminal domain VA249_RS04070 PF00501 AMP-binding enzyme VA249_RS04075 PF00570 HRDC domain VA249_RS04075 PF01612 3'-5' exonuclease VA249_RS04080 PF03776 Septum formation topological specificity factor MinE VA249_RS04085 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VA249_RS04090 PF05209 Septum formation inhibitor MinC, N-terminal domain VA249_RS04090 PF03775 Septum formation inhibitor MinC, C-terminal domain VA249_RS04095 PF05166 YcgL domain VA249_RS04100 PF13406 Transglycosylase SLT domain VA249_RS04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS04105 PF03466 LysR substrate binding domain VA249_RS04110 PF07670 Nucleoside recognition VA249_RS04110 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_RS04110 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_RS04115 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VA249_RS04115 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VA249_RS04125 PF00571 CBS domain VA249_RS04125 PF03471 Transporter associated domain VA249_RS04125 PF01595 Cyclin M transmembrane N-terminal domain VA249_RS04130 PF00270 DEAD/DEAH box helicase VA249_RS04130 PF00271 Helicase conserved C-terminal domain VA249_RS04135 PF02254 TrkA-N domain VA249_RS04135 PF02080 TrkA-C domain VA249_RS04140 PF02386 Cation transport protein VA249_RS04150 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VA249_RS04160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_RS04160 PF05698 Bacterial trigger factor protein (TF) C-terminus VA249_RS04160 PF05697 Bacterial trigger factor protein (TF) VA249_RS04165 PF00574 Clp protease VA249_RS04170 PF07724 AAA domain (Cdc48 subfamily) VA249_RS04170 PF10431 C-terminal, D2-small domain, of ClpB protein VA249_RS04170 PF06689 ClpX C4-type zinc finger VA249_RS04175 PF02190 ATP-dependent protease La (LON) substrate-binding domain VA249_RS04175 PF05362 Lon protease (S16) C-terminal proteolytic domain VA249_RS04175 PF00004 ATPase family associated with various cellular activities (AAA) VA249_RS04180 PF00216 Bacterial DNA-binding protein VA249_RS04185 PF13145 PPIC-type PPIASE domain VA249_RS04205 PF01966 HD domain VA249_RS04205 PF13286 Phosphohydrolase-associated domain VA249_RS04215 PF00155 Aminotransferase class I and II VA249_RS04220 PF00425 chorismate binding enzyme VA249_RS04225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_RS04225 PF16582 Middle domain of thiamine pyrophosphate VA249_RS04225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_RS04230 PF12697 Alpha/beta hydrolase family VA249_RS04235 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS04240 PF13378 Enolase C-terminal domain-like VA249_RS04245 PF00501 AMP-binding enzyme VA249_RS04245 PF13193 AMP-binding enzyme C-terminal domain VA249_RS04255 PF03601 Conserved hypothetical protein 698 VA249_RS04260 PF07690 Major Facilitator Superfamily VA249_RS04305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS04305 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS04310 PF00873 AcrB/AcrD/AcrF family VA249_RS04315 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_RS04330 PF13847 Methyltransferase domain VA249_RS04335 PF01263 Aldose 1-epimerase VA249_RS04340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_RS04340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_RS04345 PF01641 SelR domain VA249_RS04355 PF07023 Protein of unknown function (DUF1315) VA249_RS04360 PF17763 Glutaminase/Asparaginase C-terminal domain VA249_RS04360 PF00710 Asparaginase, N-terminal VA249_RS04365 PF01343 Peptidase family S49 VA249_RS04370 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS04370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_RS04375 PF00881 Nitroreductase family VA249_RS04380 PF01131 DNA topoisomerase VA249_RS04380 PF01751 Toprim domain VA249_RS04395 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus VA249_RS04395 PF08666 SAF domain VA249_RS04405 PF13378 Enolase C-terminal domain-like VA249_RS04405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VA249_RS04410 PF00850 Histone deacetylase domain VA249_RS04420 PF11893 Domain of unknown function (DUF3413) VA249_RS04420 PF00884 Sulfatase VA249_RS04425 PF07208 Protein of unknown function (DUF1414) VA249_RS04430 PF04245 37-kD nucleoid-associated bacterial protein VA249_RS04445 PF03553 Na+/H+ antiporter family VA249_RS04450 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_RS04450 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_RS04455 PF00520 Ion transport protein VA249_RS04455 PF00027 Cyclic nucleotide-binding domain VA249_RS04460 PF01914 MarC family integral membrane protein VA249_RS04465 PF00171 Aldehyde dehydrogenase family VA249_RS04465 PF00465 Iron-containing alcohol dehydrogenase VA249_RS04480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VA249_RS04480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VA249_RS04485 PF00462 Glutaredoxin VA249_RS04490 PF01966 HD domain VA249_RS04500 PF00005 ABC transporter VA249_RS04500 PF00664 ABC transporter transmembrane region VA249_RS04505 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS04520 PF13726 Na+-H+ antiporter family VA249_RS04520 PF03553 Na+/H+ antiporter family VA249_RS04525 PF00929 Exonuclease VA249_RS04530 PF18393 MotY N-terminal domain VA249_RS04530 PF00691 OmpA family VA249_RS04535 PF10952 Protein of unknown function (DUF2753) VA249_RS04540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS04545 PF00730 HhH-GPD superfamily base excision DNA repair protein VA249_RS04545 PF00633 Helix-hairpin-helix motif VA249_RS04545 PF10576 Iron-sulfur binding domain of endonuclease III VA249_RS04550 PF02508 Rnf-Nqr subunit, membrane protein VA249_RS04555 PF04205 FMN-binding domain VA249_RS04560 PF03116 NQR2, RnfD, RnfE family VA249_RS04565 PF10531 SLBB domain VA249_RS04565 PF13375 RnfC Barrel sandwich hybrid domain VA249_RS04565 PF12838 4Fe-4S dicluster domain VA249_RS04565 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VA249_RS04570 PF04060 Putative Fe-S cluster VA249_RS04575 PF02508 Rnf-Nqr subunit, membrane protein VA249_RS04580 PF02901 Pyruvate formate lyase-like VA249_RS04580 PF01228 Glycine radical VA249_RS04590 PF00271 Helicase conserved C-terminal domain VA249_RS04590 PF17757 UvrB interaction domain VA249_RS04590 PF12344 Ultra-violet resistance protein B VA249_RS04590 PF04851 Type III restriction enzyme, res subunit VA249_RS04590 PF02151 UvrB/uvrC motif VA249_RS04595 PF02954 Bacterial regulatory protein, Fis family VA249_RS04595 PF00072 Response regulator receiver domain VA249_RS04595 PF00158 Sigma-54 interaction domain VA249_RS04600 PF01627 Hpt domain VA249_RS04605 PF01933 Uncharacterised protein family UPF0052 VA249_RS04610 PF04055 Radical SAM superfamily VA249_RS04610 PF06463 Molybdenum Cofactor Synthesis C VA249_RS04615 PF00994 Probable molybdopterin binding domain VA249_RS04620 PF01967 MoaC family VA249_RS04625 PF02597 ThiS family VA249_RS04630 PF02391 MoaE protein VA249_RS04635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS04640 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS04645 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_RS04645 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS04650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS04650 PF00005 ABC transporter VA249_RS04655 PF00005 ABC transporter VA249_RS04655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS04660 PF13416 Bacterial extracellular solute-binding protein VA249_RS04665 PF00850 Histone deacetylase domain VA249_RS04670 PF13409 Glutathione S-transferase, N-terminal domain VA249_RS04675 PF13194 Domain of unknown function (DUF4010) VA249_RS04680 PF07085 DRTGG domain VA249_RS04680 PF01515 Phosphate acetyl/butaryl transferase VA249_RS04685 PF00871 Acetokinase family VA249_RS04690 PF04217 Protein of unknown function, DUF412 VA249_RS04700 PF02653 Branched-chain amino acid transport system / permease component VA249_RS04705 PF00005 ABC transporter VA249_RS04715 PF05230 MASE2 domain VA249_RS04715 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS04720 PF01207 Dihydrouridine synthase (Dus) VA249_RS04725 PF02810 SEC-C motif VA249_RS04725 PF03695 Uncharacterised protein family (UPF0149) VA249_RS04730 PF02600 Disulfide bond formation protein DsbB VA249_RS04735 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VA249_RS04740 PF07840 FadR C-terminal domain VA249_RS04740 PF00392 Bacterial regulatory proteins, gntR family VA249_RS04750 PF01588 Putative tRNA binding domain VA249_RS04750 PF09334 tRNA synthetases class I (M) VA249_RS04755 PF10609 NUBPL iron-transfer P-loop NTPase VA249_RS04760 PF00485 Phosphoribulokinase / Uridine kinase family VA249_RS04765 PF05170 AsmA family VA249_RS04770 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VA249_RS04770 PF12557 Cob(I)alamin adenosyltransferase N terminal VA249_RS04775 PF01451 Low molecular weight phosphotyrosine protein phosphatase VA249_RS04780 PF01740 STAS domain VA249_RS04780 PF00916 Sulfate permease family VA249_RS04785 PF10150 Ribonuclease E/G family VA249_RS04785 PF00575 S1 RNA binding domain VA249_RS04785 PF12111 Polyribonucleotide phosphorylase C terminal VA249_RS04790 PF01479 S4 domain VA249_RS04790 PF00849 RNA pseudouridylate synthase VA249_RS04795 PF02545 Maf-like protein VA249_RS04800 PF02620 Large ribosomal RNA subunit accumulation protein YceD VA249_RS04805 PF01783 Ribosomal L32p protein family VA249_RS04810 PF02504 Fatty acid synthesis protein VA249_RS04815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VA249_RS04815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VA249_RS04820 PF00698 Acyl transferase domain VA249_RS04830 PF00550 Phosphopantetheine attachment site VA249_RS04835 PF00109 Beta-ketoacyl synthase, N-terminal domain VA249_RS04835 PF02801 Beta-ketoacyl synthase, C-terminal domain VA249_RS04840 PF01063 Amino-transferase class IV VA249_RS04845 PF02618 YceG-like family VA249_RS04850 PF02223 Thymidylate kinase VA249_RS04855 PF09115 DNA polymerase III, delta subunit, C terminal VA249_RS04865 PF00367 phosphotransferase system, EIIB VA249_RS04865 PF02378 Phosphotransferase system, EIIC VA249_RS04885 PF01734 Patatin-like phospholipase VA249_RS04890 PF00224 Pyruvate kinase, barrel domain VA249_RS04890 PF02887 Pyruvate kinase, alpha/beta domain VA249_RS04895 PF00480 ROK family VA249_RS04900 PF01584 CheW-like domain VA249_RS04900 PF00072 Response regulator receiver domain VA249_RS04905 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_RS04905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_RS04905 PF14579 Helix-hairpin-helix motif VA249_RS04905 PF02811 PHP domain VA249_RS04905 PF01336 OB-fold nucleic acid binding domain VA249_RS04920 PF00106 short chain dehydrogenase VA249_RS04925 PF01343 Peptidase family S49 VA249_RS04925 PF08496 Peptidase family S49 N-terminal VA249_RS04930 PF02224 Cytidylate kinase VA249_RS04935 PF00575 S1 RNA binding domain VA249_RS04940 PF00216 Bacterial DNA-binding protein VA249_RS04945 PF06305 Lipopolysaccharide assembly protein A domain VA249_RS04950 PF18073 Rubredoxin metal binding domain VA249_RS04955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VA249_RS04960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS04980 PF03886 ABC-type transport auxiliary lipoprotein component VA249_RS04985 PF02470 MlaD protein VA249_RS04990 PF04403 Paraquat-inducible protein A VA249_RS04995 PF00356 Bacterial regulatory proteins, lacI family VA249_RS05000 PF02929 Beta galactosidase small chain VA249_RS05000 PF16353 Domain of unknown function(DUF4981) VA249_RS05000 PF00703 Glycosyl hydrolases family 2 VA249_RS05000 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_RS05000 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_RS05010 PF02264 LamB porin VA249_RS05015 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA249_RS05015 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA249_RS05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS05025 PF03466 LysR substrate binding domain VA249_RS05035 PF11412 Disulphide bond corrector protein DsbC VA249_RS05035 PF02683 Cytochrome C biogenesis protein transmembrane region VA249_RS05040 PF00085 Thioredoxin VA249_RS05085 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS05085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS05090 PF03466 LysR substrate binding domain VA249_RS05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS05110 PF00672 HAMP domain VA249_RS05110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS05110 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS05115 PF00486 Transcriptional regulatory protein, C terminal VA249_RS05115 PF00072 Response regulator receiver domain VA249_RS05120 PF00535 Glycosyl transferase family 2 VA249_RS05125 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VA249_RS05135 PF00672 HAMP domain VA249_RS05135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS05140 PF13309 HTH domain VA249_RS05140 PF08348 YheO-like PAS domain VA249_RS05145 PF01042 Endoribonuclease L-PSP VA249_RS05150 PF00375 Sodium:dicarboxylate symporter family VA249_RS05155 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS05155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_RS05160 PF11842 Domain of unknown function (DUF3362) VA249_RS05160 PF04055 Radical SAM superfamily VA249_RS05160 PF08497 Radical SAM N-terminal VA249_RS05165 PF00563 EAL domain VA249_RS05165 PF01590 GAF domain VA249_RS05165 PF00360 Phytochrome region VA249_RS05165 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS05180 PF03466 LysR substrate binding domain VA249_RS05185 PF08267 Cobalamin-independent synthase, N-terminal domain VA249_RS05185 PF01717 Cobalamin-independent synthase, Catalytic domain VA249_RS05195 PF03795 YCII-related domain VA249_RS05200 PF03061 Thioesterase superfamily VA249_RS05205 PF04279 Intracellular septation protein A VA249_RS05215 PF00290 Tryptophan synthase alpha chain VA249_RS05220 PF00291 Pyridoxal-phosphate dependent enzyme VA249_RS05225 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VA249_RS05225 PF00218 Indole-3-glycerol phosphate synthase VA249_RS05230 PF00591 Glycosyl transferase family, a/b domain VA249_RS05230 PF02885 Glycosyl transferase family, helical bundle domain VA249_RS05235 PF00117 Glutamine amidotransferase class-I VA249_RS05240 PF00425 chorismate binding enzyme VA249_RS05240 PF04715 Anthranilate synthase component I, N terminal region VA249_RS05245 PF08056 Tryptophan operon leader peptide VA249_RS05250 PF02811 PHP domain VA249_RS05255 PF01300 Telomere recombination VA249_RS05260 PF00849 RNA pseudouridylate synthase VA249_RS05260 PF01479 S4 domain VA249_RS05265 PF04269 Protein of unknown function, DUF440 VA249_RS05270 PF01132 Elongation factor P (EF-P) OB domain VA249_RS05270 PF08207 Elongation factor P (EF-P) KOW-like domain VA249_RS05270 PF09285 Elongation factor P, C-terminal VA249_RS05280 PF00136 DNA polymerase family B VA249_RS05280 PF03104 DNA polymerase family B, exonuclease domain VA249_RS05285 PF00196 Bacterial regulatory proteins, luxR family VA249_RS05285 PF00072 Response regulator receiver domain VA249_RS05290 PF01541 GIY-YIG catalytic domain VA249_RS05290 PF08459 UvrC Helix-hairpin-helix N-terminal VA249_RS05290 PF02151 UvrB/uvrC motif VA249_RS05295 PF01066 CDP-alcohol phosphatidyltransferase VA249_RS05320 PF00202 Aminotransferase class-III VA249_RS05325 PF03435 Saccharopine dehydrogenase NADP binding domain VA249_RS05325 PF16653 Saccharopine dehydrogenase C-terminal domain VA249_RS05330 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA249_RS05335 PF01842 ACT domain VA249_RS05335 PF02153 Prephenate dehydrogenase VA249_RS05345 PF00994 Probable molybdopterin binding domain VA249_RS05355 PF00268 Ribonucleotide reductase, small chain VA249_RS05360 PF00317 Ribonucleotide reductase, all-alpha domain VA249_RS05360 PF02867 Ribonucleotide reductase, barrel domain VA249_RS05360 PF03477 ATP cone domain VA249_RS05370 PF00521 DNA gyrase/topoisomerase IV, subunit A VA249_RS05370 PF03989 DNA gyrase C-terminal domain, beta-propeller VA249_RS05390 PF00925 GTP cyclohydrolase II VA249_RS05395 PF03734 L,D-transpeptidase catalytic domain VA249_RS05395 PF01471 Putative peptidoglycan binding domain VA249_RS05400 PF05951 Bacterial protein of unknown function (DUF882) VA249_RS05405 PF00753 Metallo-beta-lactamase superfamily VA249_RS05420 PF03480 Bacterial extracellular solute-binding protein, family 7 VA249_RS05430 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VA249_RS05435 PF17200 Single Cache domain 2 VA249_RS05435 PF07730 Histidine kinase VA249_RS05440 PF00072 Response regulator receiver domain VA249_RS05440 PF00196 Bacterial regulatory proteins, luxR family VA249_RS05450 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_RS05455 PF00672 HAMP domain VA249_RS05455 PF02743 Cache domain VA249_RS05455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS05460 PF14480 DNA polymerase III polC-type N-terminus I VA249_RS05460 PF00929 Exonuclease VA249_RS05460 PF02811 PHP domain VA249_RS05460 PF14579 Helix-hairpin-helix motif VA249_RS05460 PF11490 DNA polymerase III polC-type N-terminus II VA249_RS05460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_RS05460 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_RS05475 PF00155 Aminotransferase class I and II VA249_RS05490 PF01336 OB-fold nucleic acid binding domain VA249_RS05490 PF00152 tRNA synthetases class II (D, K and N) VA249_RS05495 PF01242 6-pyruvoyl tetrahydropterin synthase VA249_RS05505 PF03313 Serine dehydratase alpha chain VA249_RS05505 PF03315 Serine dehydratase beta chain VA249_RS05510 PF03222 Tryptophan/tyrosine permease family VA249_RS05515 PF00293 NUDIX domain VA249_RS05525 PF00425 chorismate binding enzyme VA249_RS05525 PF04715 Anthranilate synthase component I, N terminal region VA249_RS05540 PF04317 YcjX-like family, DUF463 VA249_RS05545 PF05128 Domain of unknown function (DUF697) VA249_RS05550 PF18024 Helix-turn-helix domain VA249_RS05550 PF00158 Sigma-54 interaction domain VA249_RS05555 PF13302 Acetyltransferase (GNAT) domain VA249_RS05570 PF00589 Phage integrase family VA249_RS05570 PF13495 Phage integrase, N-terminal SAM-like domain VA249_RS05625 PF08378 Nuclease-related domain VA249_RS05650 PF00293 NUDIX domain VA249_RS05695 PF04266 ASCH domain VA249_RS05715 PF04266 ASCH domain VA249_RS05845 PF00293 NUDIX domain VA249_RS05860 PF13649 Methyltransferase domain VA249_RS05980 PF13649 Methyltransferase domain VA249_RS06010 PF00293 NUDIX domain VA249_RS06235 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VA249_RS06240 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VA249_RS06260 PF13091 PLD-like domain VA249_RS06320 PF00293 NUDIX domain VA249_RS06375 PF04266 ASCH domain VA249_RS06470 PF00583 Acetyltransferase (GNAT) family VA249_RS06480 PF00939 Sodium:sulfate symporter transmembrane region VA249_RS06485 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS06485 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS06485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS06490 PF02954 Bacterial regulatory protein, Fis family VA249_RS06490 PF00072 Response regulator receiver domain VA249_RS06490 PF00158 Sigma-54 interaction domain VA249_RS06495 PF00563 EAL domain VA249_RS06495 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS06500 PF11871 Domain of unknown function (DUF3391) VA249_RS06500 PF01966 HD domain VA249_RS06505 PF01810 LysE type translocator VA249_RS06510 PF11230 Protein of unknown function (DUF3029) VA249_RS06515 PF04055 Radical SAM superfamily VA249_RS06520 PF03466 LysR substrate binding domain VA249_RS06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS06525 PF03741 Integral membrane protein TerC family VA249_RS06535 PF00465 Iron-containing alcohol dehydrogenase VA249_RS06540 PF03222 Tryptophan/tyrosine permease family VA249_RS06545 PF00072 Response regulator receiver domain VA249_RS06560 PF00664 ABC transporter transmembrane region VA249_RS06560 PF00005 ABC transporter VA249_RS06565 PF00664 ABC transporter transmembrane region VA249_RS06565 PF00005 ABC transporter VA249_RS06580 PF00012 Hsp70 protein VA249_RS06585 PF00012 Hsp70 protein VA249_RS06595 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS06605 PF00216 Bacterial DNA-binding protein VA249_RS06615 PF05724 Thiopurine S-methyltransferase (TPMT) VA249_RS06620 PF02222 ATP-grasp domain VA249_RS06625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_RS06625 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_RS06630 PF04172 LrgB-like family VA249_RS06635 PF03788 LrgA family VA249_RS06640 PF08411 Exonuclease C-terminal VA249_RS06640 PF00929 Exonuclease VA249_RS06645 PF13460 NAD(P)H-binding VA249_RS06650 PF02277 Phosphoribosyltransferase VA249_RS06655 PF02654 Cobalamin-5-phosphate synthase VA249_RS06660 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VA249_RS06675 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VA249_RS06680 PF01032 FecCD transport family VA249_RS06685 PF00005 ABC transporter VA249_RS06695 PF04204 Homoserine O-succinyltransferase VA249_RS06705 PF00893 Small Multidrug Resistance protein VA249_RS06710 PF13520 Amino acid permease VA249_RS06715 PF01810 LysE type translocator VA249_RS06720 PF03279 Bacterial lipid A biosynthesis acyltransferase VA249_RS06725 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VA249_RS06730 PF01810 LysE type translocator VA249_RS06735 PF01235 Sodium:alanine symporter family VA249_RS06765 PF07690 Major Facilitator Superfamily VA249_RS06770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS06770 PF03466 LysR substrate binding domain VA249_RS06780 PF01863 Protein of unknown function DUF45 VA249_RS06785 PF05971 RNA methyltransferase VA249_RS06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS06790 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS06790 PF09456 RcsC Alpha-Beta-Loop (ABL) VA249_RS06790 PF00072 Response regulator receiver domain VA249_RS06795 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS06795 PF00072 Response regulator receiver domain VA249_RS06805 PF00392 Bacterial regulatory proteins, gntR family VA249_RS06810 PF00171 Aldehyde dehydrogenase family VA249_RS06815 PF05544 Proline racemase VA249_RS06820 PF01593 Flavin containing amine oxidoreductase VA249_RS06830 PF02423 Ornithine cyclodeaminase/mu-crystallin family VA249_RS06835 PF00701 Dihydrodipicolinate synthetase family VA249_RS06840 PF00005 ABC transporter VA249_RS06840 PF08402 TOBE domain VA249_RS06845 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS06850 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS06870 PF07690 Major Facilitator Superfamily VA249_RS06905 PF03466 LysR substrate binding domain VA249_RS06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS06920 PF13533 Biotin-lipoyl like VA249_RS06945 PF07687 Peptidase dimerisation domain VA249_RS06945 PF01546 Peptidase family M20/M25/M40 VA249_RS06955 PF07969 Amidohydrolase family VA249_RS06995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS07000 PF04209 homogentisate 1,2-dioxygenase VA249_RS07010 PF14497 Glutathione S-transferase, C-terminal domain VA249_RS07010 PF02798 Glutathione S-transferase, N-terminal domain VA249_RS07075 PF02397 Bacterial sugar transferase VA249_RS07085 PF13439 Glycosyltransferase Family 4 VA249_RS07085 PF00534 Glycosyl transferases group 1 VA249_RS07090 PF13614 AAA domain VA249_RS07090 PF13807 G-rich domain on putative tyrosine kinase VA249_RS07090 PF02706 Chain length determinant protein VA249_RS07100 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS07100 PF12464 Maltose acetyltransferase VA249_RS07125 PF13439 Glycosyltransferase Family 4 VA249_RS07125 PF00534 Glycosyl transferases group 1 VA249_RS07130 PF00072 Response regulator receiver domain VA249_RS07130 PF00158 Sigma-54 interaction domain VA249_RS07130 PF02954 Bacterial regulatory protein, Fis family VA249_RS07155 PF01740 STAS domain VA249_RS07160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS07160 PF09308 LuxQ, periplasmic VA249_RS07160 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS07160 PF00072 Response regulator receiver domain VA249_RS07170 PF00582 Universal stress protein family VA249_RS07175 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VA249_RS07180 PF00924 Mechanosensitive ion channel VA249_RS07185 PF03729 Short repeat of unknown function (DUF308) VA249_RS07190 PF00892 EamA-like transporter family VA249_RS07205 PF12464 Maltose acetyltransferase VA249_RS07205 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS07210 PF13402 Peptidase M60, enhancin and enhancin-like VA249_RS07210 PF17291 N-terminal domain of M60-like peptidases VA249_RS07210 PF13322 Domain of unknown function (DUF4092) VA249_RS07230 PF01554 MatE VA249_RS07235 PF00677 Lumazine binding domain VA249_RS07245 PF03881 Fructosamine kinase VA249_RS07250 PF01339 CheB methylesterase VA249_RS07250 PF00072 Response regulator receiver domain VA249_RS07255 PF05230 MASE2 domain VA249_RS07255 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS07265 PF00877 NlpC/P60 family VA249_RS07280 PF03942 DTW domain VA249_RS07285 PF00480 ROK family VA249_RS07295 PF00994 Probable molybdopterin binding domain VA249_RS07295 PF03454 MoeA C-terminal region (domain IV) VA249_RS07295 PF03453 MoeA N-terminal region (domain I and II) VA249_RS07300 PF12804 MobA-like NTP transferase domain VA249_RS07305 PF00005 ABC transporter VA249_RS07305 PF08402 TOBE domain VA249_RS07310 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS07315 PF12849 PBP superfamily domain VA249_RS07320 PF00158 Sigma-54 interaction domain VA249_RS07320 PF00072 Response regulator receiver domain VA249_RS07320 PF02954 Bacterial regulatory protein, Fis family VA249_RS07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS07325 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS07345 PF00005 ABC transporter VA249_RS07345 PF12848 ABC transporter VA249_RS07350 PF02634 FdhD/NarQ family VA249_RS07370 PF02613 Nitrate reductase delta subunit VA249_RS07380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_RS07380 PF00384 Molybdopterin oxidoreductase VA249_RS07380 PF01568 Molydopterin dinucleotide binding domain VA249_RS07385 PF13247 4Fe-4S dicluster domain VA249_RS07400 PF02146 Sir2 family VA249_RS07405 PF13416 Bacterial extracellular solute-binding protein VA249_RS07410 PF13416 Bacterial extracellular solute-binding protein VA249_RS07415 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS07420 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS07425 PF00005 ABC transporter VA249_RS07425 PF08402 TOBE domain VA249_RS07445 PF01171 PP-loop family VA249_RS07450 PF00582 Universal stress protein family VA249_RS07455 PF00027 Cyclic nucleotide-binding domain VA249_RS07455 PF13545 Crp-like helix-turn-helix domain VA249_RS07470 PF00403 Heavy-metal-associated domain VA249_RS07480 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VA249_RS07480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA249_RS07495 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA249_RS07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS07510 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS07510 PF09308 LuxQ, periplasmic VA249_RS07510 PF00072 Response regulator receiver domain VA249_RS07525 PF06303 MatP N-terminal domain VA249_RS07525 PF17414 MatP C-terminal ribbon-helix-helix domain VA249_RS07530 PF13654 AAA domain VA249_RS07530 PF05362 Lon protease (S16) C-terminal proteolytic domain VA249_RS07535 PF07977 FabA-like domain VA249_RS07540 PF04957 Ribosome modulation factor VA249_RS07550 PF12848 ABC transporter VA249_RS07550 PF16326 ABC transporter C-terminal domain VA249_RS07550 PF00005 ABC transporter VA249_RS07560 PF01170 Putative RNA methylase family UPF0020 VA249_RS07560 PF02926 THUMP domain VA249_RS07560 PF10672 S-adenosylmethionine-dependent methyltransferase VA249_RS07565 PF07126 Cell-division protein ZapC VA249_RS07570 PF01180 Dihydroorotate dehydrogenase VA249_RS07575 PF05088 Bacterial NAD-glutamate dehydrogenase VA249_RS07585 PF01433 Peptidase family M1 domain VA249_RS07585 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VA249_RS07585 PF11940 Domain of unknown function (DUF3458) Ig-like fold VA249_RS07595 PF03572 Peptidase family S41 VA249_RS07595 PF11818 C-terminal domain of tail specific protease (DUF3340) VA249_RS07595 PF17804 Tail specific protease N-terminal domain VA249_RS07595 PF00595 PDZ domain VA249_RS07600 PF04352 ProQ/FINO family VA249_RS07600 PF17516 ProQ C-terminal domain VA249_RS07605 PF13185 GAF domain VA249_RS07610 PF00664 ABC transporter transmembrane region VA249_RS07610 PF00005 ABC transporter VA249_RS07615 PF04403 Paraquat-inducible protein A VA249_RS07620 PF02470 MlaD protein VA249_RS07625 PF01189 16S rRNA methyltransferase RsmB/F VA249_RS07625 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VA249_RS07625 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VA249_RS07645 PF00793 DAHP synthetase I family VA249_RS07650 PF04461 Protein of unknown function (DUF520) VA249_RS07655 PF10414 Sirohaem synthase dimerisation region VA249_RS07655 PF14824 Sirohaem biosynthesis protein central VA249_RS07655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_RS07660 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS07665 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS07670 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS07675 PF00005 ABC transporter VA249_RS07680 PF01027 Inhibitor of apoptosis-promoting Bax1 VA249_RS07685 PF04358 DsrC like protein VA249_RS07690 PF00708 Acylphosphatase VA249_RS07695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS07695 PF00672 HAMP domain VA249_RS07695 PF12729 Four helix bundle sensory module for signal transduction VA249_RS07700 PF17785 PUA-like domain VA249_RS07700 PF10672 S-adenosylmethionine-dependent methyltransferase VA249_RS07725 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS07730 PF06508 Queuosine biosynthesis protein QueC VA249_RS07735 PF04055 Radical SAM superfamily VA249_RS07755 PF16177 Acetyl-coenzyme A synthetase N-terminus VA249_RS07755 PF13193 AMP-binding enzyme C-terminal domain VA249_RS07755 PF00501 AMP-binding enzyme VA249_RS07760 PF04303 PrpF protein VA249_RS07765 PF00330 Aconitase family (aconitate hydratase) VA249_RS07765 PF00694 Aconitase C-terminal domain VA249_RS07770 PF00285 Citrate synthase, C-terminal domain VA249_RS07780 PF07729 FCD domain VA249_RS07780 PF00392 Bacterial regulatory proteins, gntR family VA249_RS07795 PF01925 Sulfite exporter TauE/SafE VA249_RS07800 PF16868 NMT1-like family VA249_RS07805 PF00873 AcrB/AcrD/AcrF family VA249_RS07810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS07810 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS07815 PF00171 Aldehyde dehydrogenase family VA249_RS07820 PF01590 GAF domain VA249_RS07820 PF02954 Bacterial regulatory protein, Fis family VA249_RS07820 PF00158 Sigma-54 interaction domain VA249_RS07855 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VA249_RS07855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_RS07860 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VA249_RS07865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VA249_RS07865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VA249_RS07880 PF13533 Biotin-lipoyl like VA249_RS07895 PF05368 NmrA-like family VA249_RS07900 PF03466 LysR substrate binding domain VA249_RS07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS07910 PF00696 Amino acid kinase family VA249_RS07910 PF13840 ACT domain VA249_RS07915 PF06339 Ectoine synthase VA249_RS07920 PF00202 Aminotransferase class-III VA249_RS07925 PF00583 Acetyltransferase (GNAT) family VA249_RS07930 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_RS07945 PF00571 CBS domain VA249_RS07945 PF00005 ABC transporter VA249_RS07950 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS07955 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VA249_RS07960 PF01554 MatE VA249_RS07970 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VA249_RS07970 PF00270 DEAD/DEAH box helicase VA249_RS07970 PF11898 Domain of unknown function (DUF3418) VA249_RS07970 PF04408 Helicase associated domain (HA2) VA249_RS07970 PF00271 Helicase conserved C-terminal domain VA249_RS07975 PF02525 Flavodoxin-like fold VA249_RS07980 PF08329 Chitinase A, N-terminal domain VA249_RS07980 PF00704 Glycosyl hydrolases family 18 VA249_RS08005 PF03483 B3/4 domain VA249_RS08005 PF03484 tRNA synthetase B5 domain VA249_RS08005 PF03147 Ferredoxin-fold anticodon binding domain VA249_RS08005 PF01588 Putative tRNA binding domain VA249_RS08005 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VA249_RS08010 PF01409 tRNA synthetases class II core domain (F) VA249_RS08010 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VA249_RS08020 PF01906 Putative heavy-metal-binding VA249_RS08025 PF00453 Ribosomal protein L20 VA249_RS08030 PF01632 Ribosomal protein L35 VA249_RS08035 PF00707 Translation initiation factor IF-3, C-terminal domain VA249_RS08035 PF05198 Translation initiation factor IF-3, N-terminal domain VA249_RS08040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA249_RS08040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA249_RS08040 PF02824 TGS domain VA249_RS08040 PF03129 Anticodon binding domain VA249_RS08055 PF13402 Peptidase M60, enhancin and enhancin-like VA249_RS08055 PF17291 N-terminal domain of M60-like peptidases VA249_RS08055 PF13322 Domain of unknown function (DUF4092) VA249_RS08060 PF00563 EAL domain VA249_RS08060 PF08495 FIST N domain VA249_RS08060 PF10442 FIST C domain VA249_RS08060 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS08125 PF17158 Membrane-associated sensor, integral membrane domain VA249_RS08125 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS08130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS08130 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS08130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS08145 PF07702 UTRA domain VA249_RS08145 PF00392 Bacterial regulatory proteins, gntR family VA249_RS08150 PF01979 Amidohydrolase family VA249_RS08155 PF00491 Arginase family VA249_RS08160 PF17392 Urocanase C-terminal domain VA249_RS08160 PF01175 Urocanase Rossmann-like domain VA249_RS08160 PF17391 Urocanase N-terminal domain VA249_RS08165 PF00221 Aromatic amino acid lyase VA249_RS08180 PF13183 4Fe-4S dicluster domain VA249_RS08180 PF02913 FAD linked oxidases, C-terminal domain VA249_RS08180 PF01565 FAD binding domain VA249_RS08195 PF05736 OprF membrane domain VA249_RS08195 PF00691 OmpA family VA249_RS08215 PF01259 SAICAR synthetase VA249_RS08225 PF11898 Domain of unknown function (DUF3418) VA249_RS08225 PF04408 Helicase associated domain (HA2) VA249_RS08225 PF00271 Helicase conserved C-terminal domain VA249_RS08225 PF00270 DEAD/DEAH box helicase VA249_RS08225 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VA249_RS08230 PF00390 Malic enzyme, N-terminal domain VA249_RS08230 PF03949 Malic enzyme, NAD binding domain VA249_RS08235 PF02698 DUF218 domain VA249_RS08240 PF00939 Sodium:sulfate symporter transmembrane region VA249_RS08245 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS08245 PF08448 PAS fold VA249_RS08255 PF00266 Aminotransferase class-V VA249_RS08265 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS08270 PF00005 ABC transporter VA249_RS08270 PF00664 ABC transporter transmembrane region VA249_RS08275 PF00664 ABC transporter transmembrane region VA249_RS08275 PF00005 ABC transporter VA249_RS08285 PF07694 5TMR of 5TMR-LYT VA249_RS08285 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS08295 PF00266 Aminotransferase class-V VA249_RS08305 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS08305 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS08305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS08320 PF04994 TfoX C-terminal domain VA249_RS08320 PF04993 TfoX N-terminal domain VA249_RS08330 PF03956 Lysine exporter LysO VA249_RS08340 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA249_RS08345 PF01380 SIS domain VA249_RS08345 PF01418 Helix-turn-helix domain, rpiR family VA249_RS08350 PF00465 Iron-containing alcohol dehydrogenase VA249_RS08355 PF00462 Glutaredoxin VA249_RS08360 PF06826 Predicted Permease Membrane Region VA249_RS08360 PF02080 TrkA-C domain VA249_RS08370 PF07055 Enoyl reductase FAD binding domain VA249_RS08370 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VA249_RS08370 PF12241 Trans-2-enoyl-CoA reductase catalytic region VA249_RS08375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS08375 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS08375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS08375 PF09317 Domain of unknown function (DUF1974) VA249_RS08380 PF16295 Tetracyclin repressor-like, C-terminal domain VA249_RS08380 PF00440 Bacterial regulatory proteins, tetR family VA249_RS08385 PF06965 Na+/H+ antiporter 1 VA249_RS08400 PF00005 ABC transporter VA249_RS08405 PF01554 MatE VA249_RS08410 PF11066 Protein of unknown function (DUF2867) VA249_RS08410 PF13460 NAD(P)H-binding VA249_RS08415 PF00356 Bacterial regulatory proteins, lacI family VA249_RS08420 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA249_RS08420 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA249_RS08425 PF00474 Sodium:solute symporter family VA249_RS08435 PF07690 Major Facilitator Superfamily VA249_RS08440 PF00849 RNA pseudouridylate synthase VA249_RS08440 PF01479 S4 domain VA249_RS08445 PF04851 Type III restriction enzyme, res subunit VA249_RS08445 PF00271 Helicase conserved C-terminal domain VA249_RS08455 PF00486 Transcriptional regulatory protein, C terminal VA249_RS08455 PF00072 Response regulator receiver domain VA249_RS08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS08465 PF01386 Ribosomal L25p family VA249_RS08470 PF02872 5'-nucleotidase, C-terminal domain VA249_RS08470 PF00149 Calcineurin-like phosphoesterase VA249_RS08480 PF06945 Protein of unknown function (DUF1289) VA249_RS08490 PF00196 Bacterial regulatory proteins, luxR family VA249_RS08490 PF00072 Response regulator receiver domain VA249_RS08495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS08495 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS08505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA249_RS08505 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS08515 PF09335 SNARE associated Golgi protein VA249_RS08520 PF13416 Bacterial extracellular solute-binding protein VA249_RS08525 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS08530 PF00005 ABC transporter VA249_RS08535 PF01066 CDP-alcohol phosphatidyltransferase VA249_RS08545 PF00158 Sigma-54 interaction domain VA249_RS08545 PF01590 GAF domain VA249_RS08550 PF03063 Prismane/CO dehydrogenase family VA249_RS08555 PF00970 Oxidoreductase FAD-binding domain VA249_RS08555 PF00042 Globin VA249_RS08555 PF00175 Oxidoreductase NAD-binding domain VA249_RS08565 PF00849 RNA pseudouridylate synthase VA249_RS08570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS08570 PF00672 HAMP domain VA249_RS08570 PF12729 Four helix bundle sensory module for signal transduction VA249_RS08575 PF00209 Sodium:neurotransmitter symporter family VA249_RS08580 PF13396 Phospholipase_D-nuclease N-terminal VA249_RS08580 PF13091 PLD-like domain VA249_RS08585 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_RS08590 PF03352 Methyladenine glycosylase VA249_RS08595 PF00873 AcrB/AcrD/AcrF family VA249_RS08600 PF13533 Biotin-lipoyl like VA249_RS08605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS08620 PF06667 Phage shock protein B VA249_RS08625 PF04012 PspA/IM30 family VA249_RS08630 PF02954 Bacterial regulatory protein, Fis family VA249_RS08630 PF00158 Sigma-54 interaction domain VA249_RS08635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS08640 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS08645 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_RS08645 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS08650 PF00005 ABC transporter VA249_RS08650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS08655 PF00005 ABC transporter VA249_RS08665 PF01368 DHH family VA249_RS08665 PF02833 DHHA2 domain VA249_RS08675 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA249_RS08675 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA249_RS08680 PF00384 Molybdopterin oxidoreductase VA249_RS08680 PF18364 Molybdopterin oxidoreductase N-terminal domain VA249_RS08680 PF01568 Molydopterin dinucleotide binding domain VA249_RS08685 PF03264 NapC/NirT cytochrome c family, N-terminal region VA249_RS08690 PF06796 Periplasmic nitrate reductase protein NapE VA249_RS08695 PF03649 Uncharacterised protein family (UPF0014) VA249_RS08705 PF01226 Formate/nitrite transporter VA249_RS08730 PF02698 DUF218 domain VA249_RS08735 PF00265 Thymidine kinase VA249_RS08740 PF09190 DALR domain VA249_RS08740 PF01406 tRNA synthetases class I (C) catalytic domain VA249_RS08745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA249_RS08750 PF00149 Calcineurin-like phosphoesterase VA249_RS08755 PF00563 EAL domain VA249_RS08755 PF08668 HDOD domain VA249_RS08760 PF02810 SEC-C motif VA249_RS08765 PF01502 Phosphoribosyl-AMP cyclohydrolase VA249_RS08765 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VA249_RS08770 PF00977 Histidine biosynthesis protein VA249_RS08775 PF00977 Histidine biosynthesis protein VA249_RS08780 PF00117 Glutamine amidotransferase class-I VA249_RS08785 PF08645 Polynucleotide kinase 3 phosphatase VA249_RS08785 PF00475 Imidazoleglycerol-phosphate dehydratase VA249_RS08790 PF00155 Aminotransferase class I and II VA249_RS08795 PF00815 Histidinol dehydrogenase VA249_RS08800 PF08029 HisG, C-terminal domain VA249_RS08800 PF01634 ATP phosphoribosyltransferase VA249_RS08810 PF03553 Na+/H+ antiporter family VA249_RS08815 PF00816 H-NS histone family VA249_RS08820 PF00294 pfkB family carbohydrate kinase VA249_RS08835 PF04356 Protein of unknown function (DUF489) VA249_RS08840 PF08328 Adenylosuccinate lyase C-terminal VA249_RS08840 PF00206 Lyase VA249_RS08850 PF16036 Chalcone isomerase-like VA249_RS08875 PF00106 short chain dehydrogenase VA249_RS08885 PF01435 Peptidase family M48 VA249_RS08895 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VA249_RS08905 PF08241 Methyltransferase domain VA249_RS08910 PF00155 Aminotransferase class I and II VA249_RS08915 PF06968 Biotin and Thiamin Synthesis associated domain VA249_RS08915 PF04055 Radical SAM superfamily VA249_RS08920 PF00202 Aminotransferase class-III VA249_RS08925 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA249_RS08930 PF02403 Seryl-tRNA synthetase N-terminal domain VA249_RS08930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA249_RS08940 PF03548 Outer membrane lipoprotein carrier protein LolA VA249_RS08945 PF01580 FtsK/SpoIIIE family VA249_RS08945 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VA249_RS08945 PF09397 Ftsk gamma domain VA249_RS08945 PF17854 FtsK alpha domain VA249_RS08950 PF01037 Lrp/AsnC ligand binding domain VA249_RS08955 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VA249_RS08955 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VA249_RS08965 PF03466 LysR substrate binding domain VA249_RS08965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS08975 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VA249_RS08980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_RS08980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_RS08985 PF07859 alpha/beta hydrolase fold VA249_RS09000 PF01081 KDPG and KHG aldolase VA249_RS09005 PF00294 pfkB family carbohydrate kinase VA249_RS09010 PF07883 Cupin domain VA249_RS09015 PF05426 Alginate lyase VA249_RS09015 PF07940 Heparinase II/III-like protein VA249_RS09020 PF07940 Heparinase II/III-like protein VA249_RS09020 PF05426 Alginate lyase VA249_RS09025 PF04074 YhcH/YjgK/YiaL VA249_RS09030 PF01554 MatE VA249_RS09035 PF07729 FCD domain VA249_RS09035 PF00392 Bacterial regulatory proteins, gntR family VA249_RS09040 PF07729 FCD domain VA249_RS09040 PF00392 Bacterial regulatory proteins, gntR family VA249_RS09045 PF00571 CBS domain VA249_RS09050 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_RS09050 PF02811 PHP domain VA249_RS09050 PF00929 Exonuclease VA249_RS09050 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_RS09050 PF14579 Helix-hairpin-helix motif VA249_RS09070 PF00474 Sodium:solute symporter family VA249_RS09095 PF00873 AcrB/AcrD/AcrF family VA249_RS09100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS09100 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS09110 PF03831 PhnA domain VA249_RS09110 PF08274 PhnA Zinc-Ribbon VA249_RS09140 PF00270 DEAD/DEAH box helicase VA249_RS09140 PF09382 RQC domain VA249_RS09140 PF00271 Helicase conserved C-terminal domain VA249_RS09140 PF00570 HRDC domain VA249_RS09140 PF16124 RecQ zinc-binding VA249_RS09160 PF00271 Helicase conserved C-terminal domain VA249_RS09160 PF00270 DEAD/DEAH box helicase VA249_RS09165 PF12137 RNA polymerase recycling family C-terminal VA249_RS09165 PF00176 SNF2 family N-terminal domain VA249_RS09165 PF18339 RapA N-terminal Tudor like domain 1 VA249_RS09165 PF18337 RapA N-terminal Tudor like domain VA249_RS09165 PF00271 Helicase conserved C-terminal domain VA249_RS09170 PF01227 GTP cyclohydrolase I VA249_RS09175 PF06508 Queuosine biosynthesis protein QueC VA249_RS09180 PF04055 Radical SAM superfamily VA249_RS09230 PF09313 Domain of unknown function (DUF1971) VA249_RS09230 PF03848 Tellurite resistance protein TehB VA249_RS09250 PF03747 ADP-ribosylglycohydrolase VA249_RS09260 PF00271 Helicase conserved C-terminal domain VA249_RS09260 PF08463 EcoEI R protein C-terminal VA249_RS09260 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_RS09260 PF04851 Type III restriction enzyme, res subunit VA249_RS09330 PF13356 Arm DNA-binding domain VA249_RS09330 PF00589 Phage integrase family VA249_RS09340 PF06610 L-alanine exporter VA249_RS09345 PF00072 Response regulator receiver domain VA249_RS09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS09345 PF09308 LuxQ, periplasmic VA249_RS09345 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS09360 PF02445 Quinolinate synthetase A protein VA249_RS09365 PF13174 Tetratricopeptide repeat VA249_RS09365 PF16331 TolA binding protein trimerisation VA249_RS09370 PF00691 OmpA family VA249_RS09375 PF04052 TolB amino-terminal domain VA249_RS09375 PF07676 WD40-like Beta Propeller Repeat VA249_RS09385 PF02472 Biopolymer transport protein ExbD/TolR VA249_RS09390 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS09395 PF03061 Thioesterase superfamily VA249_RS09405 PF08173 Membrane bound YbgT-like protein VA249_RS09410 PF02322 Cytochrome bd terminal oxidase subunit II VA249_RS09415 PF01654 Cytochrome bd terminal oxidase subunit I VA249_RS09420 PF05496 Holliday junction DNA helicase RuvB P-loop domain VA249_RS09420 PF17864 RuvB AAA lid domain VA249_RS09420 PF05491 RuvB C-terminal winged helix domain VA249_RS09425 PF07499 RuvA, C-terminal domain VA249_RS09425 PF01330 RuvA N terminal domain VA249_RS09430 PF02075 Crossover junction endodeoxyribonuclease RuvC VA249_RS09435 PF00152 tRNA synthetases class II (D, K and N) VA249_RS09435 PF02938 GAD domain VA249_RS09435 PF01336 OB-fold nucleic acid binding domain VA249_RS09440 PF01904 Protein of unknown function DUF72 VA249_RS09445 PF13649 Methyltransferase domain VA249_RS09450 PF08003 Protein of unknown function (DUF1698) VA249_RS09455 PF18030 RimK PreATP-grasp domain VA249_RS09455 PF08443 RimK-like ATP-grasp domain VA249_RS09475 PF00356 Bacterial regulatory proteins, lacI family VA249_RS09480 PF13416 Bacterial extracellular solute-binding protein VA249_RS09485 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS09490 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS09495 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_RS09495 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VA249_RS09495 PF00703 Glycosyl hydrolases family 2 VA249_RS09495 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_RS09500 PF17912 MalK OB fold domain VA249_RS09500 PF00005 ABC transporter VA249_RS09505 PF07745 Glycosyl hydrolase family 53 VA249_RS09515 PF04310 MukB N-terminal VA249_RS09515 PF16330 MukB hinge domain VA249_RS09520 PF04288 MukE-like family VA249_RS09525 PF03882 MukF winged-helix domain VA249_RS09525 PF17193 MukF C-terminal domain VA249_RS09525 PF17192 MukF middle domain VA249_RS09530 PF13847 Methyltransferase domain VA249_RS09535 PF02698 DUF218 domain VA249_RS09540 PF00072 Response regulator receiver domain VA249_RS09540 PF00486 Transcriptional regulatory protein, C terminal VA249_RS09545 PF02613 Nitrate reductase delta subunit VA249_RS09550 PF00356 Bacterial regulatory proteins, lacI family VA249_RS09555 PF04993 TfoX N-terminal domain VA249_RS09555 PF04994 TfoX C-terminal domain VA249_RS09575 PF08323 Starch synthase catalytic domain VA249_RS09575 PF00534 Glycosyl transferases group 1 VA249_RS09580 PF00483 Nucleotidyl transferase VA249_RS09585 PF01396 Topoisomerase DNA binding C4 zinc finger VA249_RS09585 PF01751 Toprim domain VA249_RS09585 PF08272 Topoisomerase I zinc-ribbon-like VA249_RS09585 PF01131 DNA topoisomerase VA249_RS09590 PF10692 Protein of unknown function (DUF2498) VA249_RS09595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VA249_RS09605 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VA249_RS09610 PF04376 Arginine-tRNA-protein transferase, N terminus VA249_RS09610 PF04377 Arginine-tRNA-protein transferase, C terminus VA249_RS09615 PF01176 Translation initiation factor 1A / IF-1 VA249_RS09620 PF10431 C-terminal, D2-small domain, of ClpB protein VA249_RS09620 PF02861 Clp amino terminal domain, pathogenicity island component VA249_RS09620 PF07724 AAA domain (Cdc48 subfamily) VA249_RS09620 PF00004 ATPase family associated with various cellular activities (AAA) VA249_RS09620 PF17871 AAA lid domain VA249_RS09625 PF02617 ATP-dependent Clp protease adaptor protein ClpS VA249_RS09630 PF00313 'Cold-shock' DNA-binding domain VA249_RS09635 PF03971 Monomeric isocitrate dehydrogenase VA249_RS09640 PF00849 RNA pseudouridylate synthase VA249_RS09645 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA249_RS09655 PF06733 DEAD_2 VA249_RS09655 PF13307 Helicase C-terminal domain VA249_RS09660 PF01925 Sulfite exporter TauE/SafE VA249_RS09665 PF07445 Primosomal replication protein priC VA249_RS09670 PF10689 Protein of unknown function (DUF2496) VA249_RS09675 PF03372 Endonuclease/Exonuclease/phosphatase family VA249_RS09680 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS09685 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS09690 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS09695 PF00005 ABC transporter VA249_RS09710 PF01228 Glycine radical VA249_RS09710 PF02901 Pyruvate formate lyase-like VA249_RS09720 PF04055 Radical SAM superfamily VA249_RS09730 PF03887 YfbU domain VA249_RS09735 PF06798 PrkA serine protein kinase C-terminal domain VA249_RS09735 PF08298 PrkA AAA domain VA249_RS09745 PF04293 SpoVR like protein VA249_RS09750 PF02348 Cytidylyltransferase VA249_RS09755 PF03966 Trm112p-like protein VA249_RS09760 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VA249_RS09765 PF00664 ABC transporter transmembrane region VA249_RS09765 PF00005 ABC transporter VA249_RS09770 PF03772 Competence protein VA249_RS09770 PF00753 Metallo-beta-lactamase superfamily VA249_RS09780 PF12704 MacB-like periplasmic core domain VA249_RS09780 PF02687 FtsX-like permease family VA249_RS09785 PF00005 ABC transporter VA249_RS09790 PF12704 MacB-like periplasmic core domain VA249_RS09790 PF02687 FtsX-like permease family VA249_RS09800 PF02559 CarD-like/TRCF domain VA249_RS09800 PF17757 UvrB interaction domain VA249_RS09800 PF03461 TRCF domain VA249_RS09800 PF00271 Helicase conserved C-terminal domain VA249_RS09800 PF00270 DEAD/DEAH box helicase VA249_RS09815 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS09820 PF05728 Uncharacterised protein family (UPF0227) VA249_RS09825 PF01636 Phosphotransferase enzyme family VA249_RS09830 PF13036 Peptidoglycan-synthase activator LpoB VA249_RS09830 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VA249_RS09845 PF01230 HIT domain VA249_RS09850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS09850 PF00672 HAMP domain VA249_RS09860 PF01048 Phosphorylase superfamily VA249_RS09865 PF00403 Heavy-metal-associated domain VA249_RS09870 PF01554 MatE VA249_RS09875 PF00571 CBS domain VA249_RS09875 PF00478 IMP dehydrogenase / GMP reductase domain VA249_RS09885 PF00037 4Fe-4S binding domain VA249_RS09885 PF11953 Domain of unknown function (DUF3470) VA249_RS09890 PF08032 RNA 2'-O ribose methyltransferase substrate binding VA249_RS09890 PF00588 SpoU rRNA Methylase family VA249_RS09900 PF05230 MASE2 domain VA249_RS09900 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS09910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VA249_RS09915 PF09619 Type III secretion system lipoprotein chaperone (YscW) VA249_RS09925 PF01037 Lrp/AsnC ligand binding domain VA249_RS09925 PF13404 AsnC-type helix-turn-helix domain VA249_RS09930 PF00291 Pyridoxal-phosphate dependent enzyme VA249_RS09945 PF00924 Mechanosensitive ion channel VA249_RS09945 PF05552 Conserved TM helix VA249_RS09950 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA249_RS09955 PF06826 Predicted Permease Membrane Region VA249_RS09960 PF04226 Transglycosylase associated protein VA249_RS09965 PF03692 Putative zinc- or iron-chelating domain VA249_RS09970 PF03692 Putative zinc- or iron-chelating domain VA249_RS09975 PF00230 Major intrinsic protein VA249_RS09980 PF02132 RecR protein VA249_RS09980 PF13662 Toprim domain VA249_RS09985 PF02575 YbaB/EbfC DNA-binding family VA249_RS09990 PF12169 DNA polymerase III subunits gamma and tau domain III VA249_RS09990 PF12170 DNA polymerase III tau subunit V interacting with alpha VA249_RS09995 PF00156 Phosphoribosyl transferase domain VA249_RS10000 PF04304 Protein of unknown function (DUF454) VA249_RS10005 PF00072 Response regulator receiver domain VA249_RS10010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS10010 PF03466 LysR substrate binding domain VA249_RS10015 PF00156 Phosphoribosyl transferase domain VA249_RS10020 PF02674 Colicin V production protein VA249_RS10025 PF05036 Sporulation related domain VA249_RS10030 PF02875 Mur ligase family, glutamate ligase domain VA249_RS10030 PF08245 Mur ligase middle domain VA249_RS10035 PF01039 Carboxyl transferase domain VA249_RS10035 PF17848 Acetyl-coA carboxylase zinc finger domain VA249_RS10040 PF01416 tRNA pseudouridine synthase VA249_RS10050 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_RS10050 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_RS10055 PF11890 Domain of unknown function (DUF3410) VA249_RS10055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_RS10055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_RS10060 PF02801 Beta-ketoacyl synthase, C-terminal domain VA249_RS10060 PF00109 Beta-ketoacyl synthase, N-terminal domain VA249_RS10065 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VA249_RS10065 PF01266 FAD dependent oxidoreductase VA249_RS10070 PF03358 NADPH-dependent FMN reductase VA249_RS10075 PF08891 YfcL protein VA249_RS10080 PF04315 Elongation factor P hydroxylase VA249_RS10085 PF03458 UPF0126 domain VA249_RS10090 PF01264 Chorismate synthase VA249_RS10095 PF05175 Methyltransferase small domain VA249_RS10100 PF01713 Smr domain VA249_RS10105 PF00300 Histidine phosphatase superfamily (branch 1) VA249_RS10110 PF16187 Middle or third domain of peptidase_M16 VA249_RS10110 PF05193 Peptidase M16 inactive domain VA249_RS10110 PF00675 Insulinase (Peptidase family M16) VA249_RS10120 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS10120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VA249_RS10120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VA249_RS10125 PF00108 Thiolase, N-terminal domain VA249_RS10125 PF02803 Thiolase, C-terminal domain VA249_RS10130 PF08281 Sigma-70, region 4 VA249_RS10130 PF04542 Sigma-70 region 2 VA249_RS10140 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_RS10145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_RS10150 PF04333 MlaA lipoprotein VA249_RS10155 PF03918 Cytochrome C biogenesis protein VA249_RS10160 PF03918 Cytochrome C biogenesis protein VA249_RS10165 PF08534 Redoxin VA249_RS10170 PF01578 Cytochrome C assembly protein VA249_RS10170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VA249_RS10175 PF03100 CcmE VA249_RS10185 PF01578 Cytochrome C assembly protein VA249_RS10190 PF03379 CcmB protein VA249_RS10195 PF00005 ABC transporter VA249_RS10205 PF01584 CheW-like domain VA249_RS10215 PF13614 AAA domain VA249_RS10220 PF01339 CheB methylesterase VA249_RS10220 PF00072 Response regulator receiver domain VA249_RS10225 PF00072 Response regulator receiver domain VA249_RS10225 PF01584 CheW-like domain VA249_RS10225 PF01627 Hpt domain VA249_RS10225 PF02895 Signal transducing histidine kinase, homodimeric domain VA249_RS10225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS10230 PF04344 Chemotaxis phosphatase, CheZ VA249_RS10235 PF00072 Response regulator receiver domain VA249_RS10240 PF04542 Sigma-70 region 2 VA249_RS10240 PF04545 Sigma-70, region 4 VA249_RS10240 PF04539 Sigma-70 region 3 VA249_RS10245 PF10609 NUBPL iron-transfer P-loop NTPase VA249_RS10250 PF00448 SRP54-type protein, GTPase domain VA249_RS10255 PF00771 FHIPEP family VA249_RS10260 PF01312 FlhB HrpN YscU SpaS Family VA249_RS10265 PF01311 Bacterial export proteins, family 1 VA249_RS10270 PF01313 Bacterial export proteins, family 3 VA249_RS10275 PF00813 FliP family VA249_RS10280 PF04347 Flagellar biosynthesis protein, FliO VA249_RS10285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA249_RS10290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA249_RS10290 PF02154 Flagellar motor switch protein FliM VA249_RS10310 PF18269 T3SS EscN ATPase C-terminal domain VA249_RS10310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_RS10320 PF14841 FliG middle domain VA249_RS10320 PF14842 FliG N-terminal domain VA249_RS10320 PF01706 FliG C-terminal domain VA249_RS10325 PF01514 Secretory protein of YscJ/FliF family VA249_RS10325 PF08345 Flagellar M-ring protein C-terminal VA249_RS10330 PF02049 Flagellar hook-basal body complex protein FliE VA249_RS10335 PF02954 Bacterial regulatory protein, Fis family VA249_RS10335 PF00158 Sigma-54 interaction domain VA249_RS10335 PF00072 Response regulator receiver domain VA249_RS10340 PF13188 PAS domain VA249_RS10340 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS10345 PF06490 Flagellar regulatory protein FleQ VA249_RS10345 PF00158 Sigma-54 interaction domain VA249_RS10345 PF02954 Bacterial regulatory protein, Fis family VA249_RS10350 PF02561 Flagellar protein FliS VA249_RS10360 PF07196 Flagellin hook IN motif VA249_RS10360 PF07195 Flagellar hook-associated protein 2 C-terminus VA249_RS10360 PF02465 Flagellar hook-associated protein 2 N-terminus VA249_RS10365 PF03646 FlaG protein VA249_RS10370 PF00700 Bacterial flagellin C-terminal helical region VA249_RS10370 PF07196 Flagellin hook IN motif VA249_RS10370 PF00669 Bacterial flagellin N-terminal helical region VA249_RS10375 PF00700 Bacterial flagellin C-terminal helical region VA249_RS10375 PF07196 Flagellin hook IN motif VA249_RS10375 PF00669 Bacterial flagellin N-terminal helical region VA249_RS10380 PF00700 Bacterial flagellin C-terminal helical region VA249_RS10380 PF00669 Bacterial flagellin N-terminal helical region VA249_RS10380 PF07196 Flagellin hook IN motif VA249_RS10385 PF04261 Dyp-type peroxidase family VA249_RS10390 PF11143 Protein of unknown function (DUF2919) VA249_RS10410 PF03960 ArsC family VA249_RS10415 PF07687 Peptidase dimerisation domain VA249_RS10415 PF01546 Peptidase family M20/M25/M40 VA249_RS10430 PF06804 NlpB/DapX lipoprotein VA249_RS10435 PF00701 Dihydrodipicolinate synthetase family VA249_RS10440 PF01842 ACT domain VA249_RS10470 PF00578 AhpC/TSA family VA249_RS10480 PF01381 Helix-turn-helix VA249_RS10505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VA249_RS10520 PF01594 AI-2E family transporter VA249_RS10530 PF13181 Tetratricopeptide repeat VA249_RS10530 PF01435 Peptidase family M48 VA249_RS10535 PF03960 ArsC family VA249_RS10540 PF03358 NADPH-dependent FMN reductase VA249_RS10555 PF00860 Permease family VA249_RS10565 PF00586 AIR synthase related protein, N-terminal domain VA249_RS10565 PF02769 AIR synthase related protein, C-terminal domain VA249_RS10570 PF00551 Formyl transferase VA249_RS10575 PF13230 Glutamine amidotransferases class-II VA249_RS10580 PF13580 SIS domain VA249_RS10585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS10585 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS10585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS10585 PF09317 Domain of unknown function (DUF1974) VA249_RS10600 PF00929 Exonuclease VA249_RS10605 PF00075 RNase H VA249_RS10610 PF08241 Methyltransferase domain VA249_RS10615 PF16123 Hydroxyacylglutathione hydrolase C-terminus VA249_RS10615 PF00753 Metallo-beta-lactamase superfamily VA249_RS10620 PF01464 Transglycosylase SLT domain VA249_RS10620 PF01476 LysM domain VA249_RS10635 PF00543 Nitrogen regulatory protein P-II VA249_RS10640 PF00034 Cytochrome c VA249_RS10645 PF09179 TilS substrate binding domain VA249_RS10645 PF01171 PP-loop family VA249_RS10645 PF11734 TilS substrate C-terminal domain VA249_RS10650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VA249_RS10655 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_RS10655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_RS10655 PF02811 PHP domain VA249_RS10655 PF01336 OB-fold nucleic acid binding domain VA249_RS10655 PF14579 Helix-hairpin-helix motif VA249_RS10660 PF01351 Ribonuclease HII VA249_RS10665 PF02684 Lipid-A-disaccharide synthetase VA249_RS10670 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VA249_RS10670 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS10675 PF07977 FabA-like domain VA249_RS10680 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS10680 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VA249_RS10685 PF03938 Outer membrane protein (OmpH-like) VA249_RS10690 PF01103 Surface antigen VA249_RS10690 PF07244 Surface antigen variable number repeat VA249_RS10695 PF17820 PDZ domain VA249_RS10695 PF02163 Peptidase family M50 VA249_RS10700 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VA249_RS10700 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VA249_RS10700 PF13288 DXP reductoisomerase C-terminal domain VA249_RS10710 PF01255 Putative undecaprenyl diphosphate synthase VA249_RS10715 PF01765 Ribosome recycling factor VA249_RS10720 PF00696 Amino acid kinase family VA249_RS10725 PF00889 Elongation factor TS VA249_RS10730 PF00318 Ribosomal protein S2 VA249_RS10735 PF00557 Metallopeptidase family M24 VA249_RS10740 PF01842 ACT domain VA249_RS10740 PF08335 GlnD PII-uridylyltransferase VA249_RS10740 PF01966 HD domain VA249_RS10740 PF01909 Nucleotidyltransferase domain VA249_RS10745 PF11944 Protein of unknown function (DUF3461) VA249_RS10750 PF00849 RNA pseudouridylate synthase VA249_RS10755 PF04287 tRNA pseudouridine synthase C VA249_RS10780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VA249_RS10785 PF03806 AbgT putative transporter family VA249_RS10790 PF18389 TrmO C-terminal domain VA249_RS10790 PF01980 tRNA-methyltransferase O VA249_RS10795 PF04073 Aminoacyl-tRNA editing domain VA249_RS10795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA249_RS10795 PF03129 Anticodon binding domain VA249_RS10805 PF06786 Uncharacterised protein family (UPF0253) VA249_RS10815 PF00209 Sodium:neurotransmitter symporter family VA249_RS10825 PF01272 Transcription elongation factor, GreA/GreB, C-term VA249_RS10825 PF03449 Transcription elongation factor, N-terminal VA249_RS10830 PF09382 RQC domain VA249_RS10830 PF00271 Helicase conserved C-terminal domain VA249_RS10830 PF00570 HRDC domain VA249_RS10830 PF16124 RecQ zinc-binding VA249_RS10830 PF00270 DEAD/DEAH box helicase VA249_RS10835 PF00817 impB/mucB/samB family VA249_RS10835 PF11799 impB/mucB/samB family C-terminal domain VA249_RS10835 PF11798 IMS family HHH motif VA249_RS10840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS10845 PF00072 Response regulator receiver domain VA249_RS10845 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS10855 PF02424 ApbE family VA249_RS10860 PF00970 Oxidoreductase FAD-binding domain VA249_RS10860 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_RS10860 PF00175 Oxidoreductase NAD-binding domain VA249_RS10865 PF02508 Rnf-Nqr subunit, membrane protein VA249_RS10870 PF02508 Rnf-Nqr subunit, membrane protein VA249_RS10875 PF04205 FMN-binding domain VA249_RS10880 PF03116 NQR2, RnfD, RnfE family VA249_RS10885 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VA249_RS10885 PF11973 NQRA C-terminal domain VA249_RS10890 PF01722 BolA-like protein VA249_RS10895 PF05175 Methyltransferase small domain VA249_RS10905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA249_RS10910 PF07690 Major Facilitator Superfamily VA249_RS10920 PF04542 Sigma-70 region 2 VA249_RS10920 PF04545 Sigma-70, region 4 VA249_RS10935 PF03502 Nucleoside-specific channel-forming protein, Tsx VA249_RS10940 PF08546 Ketopantoate reductase PanE/ApbA C terminal VA249_RS10940 PF02558 Ketopantoate reductase PanE/ApbA VA249_RS10945 PF01965 DJ-1/PfpI family VA249_RS10950 PF00266 Aminotransferase class-V VA249_RS10955 PF02657 Fe-S metabolism associated domain VA249_RS10960 PF00899 ThiF family VA249_RS10965 PF06725 3D domain VA249_RS10965 PF03562 MltA specific insert domain VA249_RS10975 PF00696 Amino acid kinase family VA249_RS10975 PF00583 Acetyltransferase (GNAT) family VA249_RS10985 PF13538 UvrD-like helicase C-terminal domain VA249_RS10990 PF12705 PD-(D/E)XK nuclease superfamily VA249_RS10990 PF00580 UvrD/REP helicase N-terminal domain VA249_RS10990 PF13361 UvrD-like helicase C-terminal domain VA249_RS10995 PF17946 RecC C-terminal domain VA249_RS11005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS11005 PF03466 LysR substrate binding domain VA249_RS11010 PF07130 YebG protein VA249_RS11025 PF14602 Hexapeptide repeat of succinyl-transferase VA249_RS11025 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VA249_RS11030 PF02595 Glycerate kinase family VA249_RS11035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_RS11035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_RS11040 PF01261 Xylose isomerase-like TIM barrel VA249_RS11045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_RS11045 PF00205 Thiamine pyrophosphate enzyme, central domain VA249_RS11045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_RS11050 PF04115 Ureidoglycolate lyase VA249_RS11060 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VA249_RS11070 PF01546 Peptidase family M20/M25/M40 VA249_RS11075 PF02615 Malate/L-lactate dehydrogenase VA249_RS11080 PF11392 Protein of unknown function (DUF2877) VA249_RS11085 PF06545 Protein of unknown function (DUF1116) VA249_RS11090 PF02629 CoA binding domain VA249_RS11090 PF00549 CoA-ligase VA249_RS11095 PF03466 LysR substrate binding domain VA249_RS11095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS11100 PF00696 Amino acid kinase family VA249_RS11105 PF07883 Cupin domain VA249_RS11105 PF05899 Protein of unknown function (DUF861) VA249_RS11110 PF00266 Aminotransferase class-V VA249_RS11120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_RS11120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_RS11125 PF01266 FAD dependent oxidoreductase VA249_RS11125 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VA249_RS11130 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VA249_RS11130 PF01464 Transglycosylase SLT domain VA249_RS11145 PF00356 Bacterial regulatory proteins, lacI family VA249_RS11150 PF01263 Aldose 1-epimerase VA249_RS11155 PF00288 GHMP kinases N terminal domain VA249_RS11155 PF10509 Galactokinase galactose-binding signature VA249_RS11155 PF08544 GHMP kinases C terminal VA249_RS11160 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA249_RS11160 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA249_RS11165 PF16363 GDP-mannose 4,6 dehydratase VA249_RS11170 PF00356 Bacterial regulatory proteins, lacI family VA249_RS11175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS11175 PF03466 LysR substrate binding domain VA249_RS11185 PF00501 AMP-binding enzyme VA249_RS11190 PF03764 Elongation factor G, domain IV VA249_RS11190 PF03144 Elongation factor Tu domain 2 VA249_RS11190 PF00679 Elongation factor G C-terminus VA249_RS11190 PF14492 Elongation Factor G, domain II VA249_RS11190 PF00009 Elongation factor Tu GTP binding domain VA249_RS11195 PF18073 Rubredoxin metal binding domain VA249_RS11205 PF18429 Domain of unknown function (DUF5609) VA249_RS11215 PF01048 Phosphorylase superfamily VA249_RS11220 PF01676 Metalloenzyme superfamily VA249_RS11225 PF02885 Glycosyl transferase family, helical bundle domain VA249_RS11225 PF00591 Glycosyl transferase family, a/b domain VA249_RS11225 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VA249_RS11230 PF01791 DeoC/LacD family aldolase VA249_RS11235 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_RS11235 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_RS11235 PF07670 Nucleoside recognition VA249_RS11240 PF01026 TatD related DNase VA249_RS11250 PF00009 Elongation factor Tu GTP binding domain VA249_RS11250 PF03144 Elongation factor Tu domain 2 VA249_RS11250 PF16658 Class II release factor RF3, C-terminal domain VA249_RS11270 PF13508 Acetyltransferase (GNAT) domain VA249_RS11275 PF02036 SCP-2 sterol transfer family VA249_RS11280 PF03707 Bacterial signalling protein N terminal repeat VA249_RS11280 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS11280 PF00563 EAL domain VA249_RS11285 PF01136 Peptidase family U32 VA249_RS11290 PF01136 Peptidase family U32 VA249_RS11295 PF01554 MatE VA249_RS11300 PF01047 MarR family VA249_RS11305 PF07719 Tetratricopeptide repeat VA249_RS11305 PF13181 Tetratricopeptide repeat VA249_RS11310 PF00013 KH domain VA249_RS11310 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VA249_RS11310 PF01138 3' exoribonuclease family, domain 1 VA249_RS11310 PF03725 3' exoribonuclease family, domain 2 VA249_RS11310 PF00575 S1 RNA binding domain VA249_RS11315 PF00312 Ribosomal protein S15 VA249_RS11320 PF09157 Pseudouridine synthase II TruB, C-terminal VA249_RS11320 PF01509 TruB family pseudouridylate synthase (N terminal domain) VA249_RS11320 PF16198 tRNA pseudouridylate synthase B C-terminal domain VA249_RS11325 PF02033 Ribosome-binding factor A VA249_RS11330 PF00009 Elongation factor Tu GTP binding domain VA249_RS11330 PF11987 Translation-initiation factor 2 VA249_RS11330 PF08364 Bacterial translation initiation factor IF-2 associated region VA249_RS11330 PF04760 Translation initiation factor IF-2, N-terminal region VA249_RS11335 PF13184 NusA-like KH domain VA249_RS11335 PF08529 NusA N-terminal domain VA249_RS11335 PF00575 S1 RNA binding domain VA249_RS11340 PF02576 RimP N-terminal domain VA249_RS11340 PF17384 RimP C-terminal SH3 domain VA249_RS11355 PF03840 Preprotein translocase SecG subunit VA249_RS11360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_RS11360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_RS11360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_RS11360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_RS11365 PF00809 Pterin binding enzyme VA249_RS11370 PF00004 ATPase family associated with various cellular activities (AAA) VA249_RS11370 PF17862 AAA+ lid domain VA249_RS11370 PF06480 FtsH Extracellular VA249_RS11370 PF01434 Peptidase family M41 VA249_RS11375 PF01728 FtsJ-like methyltransferase VA249_RS11380 PF01985 CRS1 / YhbY (CRM) domain VA249_RS11385 PF03449 Transcription elongation factor, N-terminal VA249_RS11385 PF01272 Transcription elongation factor, GreA/GreB, C-term VA249_RS11390 PF13609 Gram-negative porin VA249_RS11395 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VA249_RS11405 PF00579 tRNA synthetases class I (W and Y) VA249_RS11410 PF01476 LysM domain VA249_RS11410 PF08525 Opacity-associated protein A N-terminal motif VA249_RS11410 PF01551 Peptidase family M23 VA249_RS11415 PF00873 AcrB/AcrD/AcrF family VA249_RS11420 PF13533 Biotin-lipoyl like VA249_RS11425 PF01521 Iron-sulphur cluster biosynthesis VA249_RS11430 PF00202 Aminotransferase class-III VA249_RS11435 PF01594 AI-2E family transporter VA249_RS11440 PF05175 Methyltransferase small domain VA249_RS11440 PF08468 Methyltransferase small domain N-terminal VA249_RS11445 PF00072 Response regulator receiver domain VA249_RS11445 PF09308 LuxQ, periplasmic VA249_RS11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS11445 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS11450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS11455 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS11460 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS11460 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_RS11465 PF00005 ABC transporter VA249_RS11465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS11470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS11470 PF00005 ABC transporter VA249_RS11480 PF01869 BadF/BadG/BcrA/BcrD ATPase family VA249_RS11485 PF00728 Glycosyl hydrolase family 20, catalytic domain VA249_RS11485 PF02838 Glycosyl hydrolase family 20, domain 2 VA249_RS11490 PF06165 Glycosyltransferase family 36 VA249_RS11490 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VA249_RS11495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_RS11495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_RS11495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_RS11495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_RS11500 PF00005 ABC transporter VA249_RS11500 PF08402 TOBE domain VA249_RS11510 PF13416 Bacterial extracellular solute-binding protein VA249_RS11515 PF00909 Ammonium Transporter Family VA249_RS11520 PF00543 Nitrogen regulatory protein P-II VA249_RS11525 PF06062 Uncharacterised protein family (UPF0231) VA249_RS11530 PF05651 Putative sugar diacid recognition VA249_RS11530 PF17853 GGDEF-like domain VA249_RS11530 PF13556 PucR C-terminal helix-turn-helix domain VA249_RS11535 PF02447 GntP family permease VA249_RS11540 PF02595 Glycerate kinase family VA249_RS11545 PF11791 Aconitate B N-terminal domain VA249_RS11545 PF06434 Aconitate hydratase 2 N-terminus VA249_RS11545 PF00330 Aconitase family (aconitate hydratase) VA249_RS11550 PF01734 Patatin-like phospholipase VA249_RS11555 PF00912 Transglycosylase VA249_RS11555 PF14814 Bifunctional transglycosylase second domain VA249_RS11555 PF00905 Penicillin binding protein transpeptidase domain VA249_RS11560 PF08482 ATP-dependent helicase C-terminal VA249_RS11560 PF04408 Helicase associated domain (HA2) VA249_RS11560 PF00270 DEAD/DEAH box helicase VA249_RS11560 PF00271 Helicase conserved C-terminal domain VA249_RS11565 PF03749 Sugar fermentation stimulation protein RE domain VA249_RS11565 PF17746 SfsA N-terminal OB domain VA249_RS11570 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA249_RS11575 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA249_RS11580 PF12626 Polymerase A arginine-rich C-terminus VA249_RS11580 PF01743 Poly A polymerase head domain VA249_RS11580 PF12627 Probable RNA and SrmB- binding site of polymerase A VA249_RS11585 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VA249_RS11590 PF02548 Ketopantoate hydroxymethyltransferase VA249_RS11595 PF02569 Pantoate-beta-alanine ligase VA249_RS11600 PF01061 ABC-2 type transporter VA249_RS11605 PF00005 ABC transporter VA249_RS11610 PF01740 STAS domain VA249_RS11610 PF00916 Sulfate permease family VA249_RS11615 PF00484 Carbonic anhydrase VA249_RS11620 PF00156 Phosphoribosyl transferase domain VA249_RS11625 PF00440 Bacterial regulatory proteins, tetR family VA249_RS11630 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS11630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_RS11635 PF02817 e3 binding domain VA249_RS11635 PF00364 Biotin-requiring enzyme VA249_RS11635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA249_RS11640 PF17831 Pyruvate dehydrogenase E1 component middle domain VA249_RS11640 PF00456 Transketolase, thiamine diphosphate binding domain VA249_RS11645 PF00392 Bacterial regulatory proteins, gntR family VA249_RS11645 PF07729 FCD domain VA249_RS11650 PF01510 N-acetylmuramoyl-L-alanine amidase VA249_RS11655 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VA249_RS11655 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VA249_RS11660 PF07963 Prokaryotic N-terminal methylation motif VA249_RS11660 PF00114 Pilin (bacterial filament) VA249_RS11665 PF00437 Type II/IV secretion system protein VA249_RS11665 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VA249_RS11670 PF00482 Type II secretion system (T2SS), protein F VA249_RS11675 PF06750 Bacterial Peptidase A24 N-terminal domain VA249_RS11675 PF01478 Type IV leader peptidase family VA249_RS11680 PF01121 Dephospho-CoA kinase VA249_RS11685 PF07072 Cell division protein VA249_RS11690 PF03884 DNA gyrase inhibitor YacG VA249_RS11695 PF01245 Ribosomal protein L19 VA249_RS11700 PF01746 tRNA (Guanine-1)-methyltransferase VA249_RS11705 PF05239 PRC-barrel domain VA249_RS11705 PF01782 RimM N-terminal domain VA249_RS11710 PF00886 Ribosomal protein S16 VA249_RS11715 PF00448 SRP54-type protein, GTPase domain VA249_RS11715 PF02881 SRP54-type protein, helical bundle domain VA249_RS11715 PF02978 Signal peptide binding domain VA249_RS11720 PF01578 Cytochrome C assembly protein VA249_RS11725 PF01595 Cyclin M transmembrane N-terminal domain VA249_RS11725 PF03471 Transporter associated domain VA249_RS11725 PF00571 CBS domain VA249_RS11730 PF02664 S-Ribosylhomocysteinase (LuxS) VA249_RS11740 PF04262 Glutamate-cysteine ligase VA249_RS11745 PF00675 Insulinase (Peptidase family M16) VA249_RS11745 PF05193 Peptidase M16 inactive domain VA249_RS11750 PF09335 SNARE associated Golgi protein VA249_RS11755 PF08240 Alcohol dehydrogenase GroES-like domain VA249_RS11755 PF00107 Zinc-binding dehydrogenase VA249_RS11760 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VA249_RS11765 PF00364 Biotin-requiring enzyme VA249_RS11765 PF00682 HMGL-like VA249_RS11765 PF02436 Conserved carboxylase domain VA249_RS11770 PF04277 Oxaloacetate decarboxylase, gamma chain VA249_RS11775 PF00196 Bacterial regulatory proteins, luxR family VA249_RS11855 PF02599 Global regulator protein family VA249_RS11860 PF00696 Amino acid kinase family VA249_RS11860 PF01842 ACT domain VA249_RS11860 PF13840 ACT domain VA249_RS11865 PF02272 DHHA1 domain VA249_RS11865 PF01411 tRNA synthetases class II (A) VA249_RS11865 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA249_RS11870 PF02631 RecX family VA249_RS11875 PF00154 recA bacterial DNA recombination protein VA249_RS11880 PF02464 Competence-damaged protein VA249_RS11885 PF00488 MutS domain V VA249_RS11885 PF05192 MutS domain III VA249_RS11885 PF05190 MutS family domain IV VA249_RS11885 PF01624 MutS domain I VA249_RS11885 PF05188 MutS domain II VA249_RS11890 PF00140 Sigma-70 factor, region 1.2 VA249_RS11890 PF04542 Sigma-70 region 2 VA249_RS11890 PF04539 Sigma-70 region 3 VA249_RS11890 PF04545 Sigma-70, region 4 VA249_RS11895 PF01476 LysM domain VA249_RS11895 PF01551 Peptidase family M23 VA249_RS11905 PF01975 Survival protein SurE VA249_RS11910 PF01142 tRNA pseudouridine synthase D (TruD) VA249_RS11915 PF02542 YgbB family VA249_RS11920 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VA249_RS11925 PF04977 Septum formation initiator VA249_RS11930 PF00113 Enolase, C-terminal TIM barrel domain VA249_RS11930 PF03952 Enolase, N-terminal domain VA249_RS11935 PF06418 CTP synthase N-terminus VA249_RS11935 PF00117 Glutamine amidotransferase class-I VA249_RS11940 PF03819 MazG nucleotide pyrophosphohydrolase domain VA249_RS11945 PF13291 ACT domain VA249_RS11945 PF04607 Region found in RelA / SpoT proteins VA249_RS11945 PF02824 TGS domain VA249_RS11950 PF05958 tRNA (Uracil-5-)-methyltransferase VA249_RS11950 PF01938 TRAM domain VA249_RS11955 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VA249_RS11955 PF00672 HAMP domain VA249_RS11955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS11955 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS11955 PF01627 Hpt domain VA249_RS11955 PF00072 Response regulator receiver domain VA249_RS11960 PF01648 4'-phosphopantetheinyl transferase superfamily VA249_RS11965 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VA249_RS11970 PF02565 Recombination protein O C terminal VA249_RS11970 PF11967 Recombination protein O N terminal VA249_RS11975 PF07650 KH domain VA249_RS11975 PF01926 50S ribosome-binding GTPase VA249_RS11980 PF00035 Double-stranded RNA binding motif VA249_RS11980 PF14622 Ribonuclease-III-like VA249_RS11985 PF10502 Signal peptidase, peptidase S26 VA249_RS11990 PF03144 Elongation factor Tu domain 2 VA249_RS11990 PF00679 Elongation factor G C-terminus VA249_RS11990 PF00009 Elongation factor Tu GTP binding domain VA249_RS11990 PF06421 GTP-binding protein LepA C-terminus VA249_RS12000 PF03888 MucB/RseB N-terminal domain VA249_RS12000 PF17188 MucB/RseB C-terminal domain VA249_RS12005 PF03872 Anti sigma-E protein RseA, N-terminal domain VA249_RS12005 PF03873 Anti sigma-E protein RseA, C-terminal domain VA249_RS12010 PF04542 Sigma-70 region 2 VA249_RS12010 PF08281 Sigma-70, region 4 VA249_RS12015 PF02910 Fumarate reductase flavoprotein C-term VA249_RS12015 PF00890 FAD binding domain VA249_RS12020 PF03937 Flavinator of succinate dehydrogenase VA249_RS12040 PF01494 FAD binding domain VA249_RS12045 PF01494 FAD binding domain VA249_RS12050 PF03695 Uncharacterised protein family (UPF0149) VA249_RS12055 PF05164 Cell division protein ZapA VA249_RS12065 PF01812 5-formyltetrahydrofolate cyclo-ligase family VA249_RS12070 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VA249_RS12075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_RS12075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_RS12075 PF01842 ACT domain VA249_RS12080 PF04402 Protein of unknown function (DUF541) VA249_RS12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS12085 PF03466 LysR substrate binding domain VA249_RS12090 PF01810 LysE type translocator VA249_RS12100 PF00924 Mechanosensitive ion channel VA249_RS12100 PF05552 Conserved TM helix VA249_RS12105 PF01116 Fructose-bisphosphate aldolase class-II VA249_RS12110 PF00162 Phosphoglycerate kinase VA249_RS12115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_RS12115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_RS12125 PF02779 Transketolase, pyrimidine binding domain VA249_RS12125 PF00456 Transketolase, thiamine diphosphate binding domain VA249_RS12125 PF02780 Transketolase, C-terminal domain VA249_RS12135 PF00438 S-adenosylmethionine synthetase, N-terminal domain VA249_RS12135 PF02773 S-adenosylmethionine synthetase, C-terminal domain VA249_RS12135 PF02772 S-adenosylmethionine synthetase, central domain VA249_RS12145 PF10263 SprT-like family VA249_RS12145 PF17283 SprT-like zinc ribbon domain VA249_RS12150 PF04231 Endonuclease I VA249_RS12155 PF04452 RNA methyltransferase VA249_RS12160 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VA249_RS12160 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VA249_RS12165 PF02622 Uncharacterized ACR, COG1678 VA249_RS12170 PF03652 Holliday junction resolvase VA249_RS12175 PF00437 Type II/IV secretion system protein VA249_RS12180 PF00437 Type II/IV secretion system protein VA249_RS12185 PF01168 Alanine racemase, N-terminal domain VA249_RS12190 PF03807 NADP oxidoreductase coenzyme F420-dependent VA249_RS12190 PF14748 Pyrroline-5-carboxylate reductase dimerisation VA249_RS12195 PF02325 YGGT family VA249_RS12200 PF02594 Uncharacterised ACR, YggU family COG1872 VA249_RS12210 PF01725 Ham1 family VA249_RS12215 PF06969 HemN C-terminal domain VA249_RS12215 PF04055 Radical SAM superfamily VA249_RS12220 PF04960 Glutaminase VA249_RS12225 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA249_RS12230 PF02390 Putative methyltransferase VA249_RS12235 PF00730 HhH-GPD superfamily base excision DNA repair protein VA249_RS12235 PF00633 Helix-hairpin-helix motif VA249_RS12235 PF10576 Iron-sulfur binding domain of endonuclease III VA249_RS12235 PF14815 NUDIX domain VA249_RS12240 PF04362 Bacterial Fe(2+) trafficking VA249_RS12245 PF01464 Transglycosylase SLT domain VA249_RS12245 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VA249_RS12285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS12285 PF00672 HAMP domain VA249_RS12285 PF17200 Single Cache domain 2 VA249_RS12315 PF00171 Aldehyde dehydrogenase family VA249_RS12350 PF00072 Response regulator receiver domain VA249_RS12355 PF00583 Acetyltransferase (GNAT) family VA249_RS12355 PF00795 Carbon-nitrogen hydrolase VA249_RS12380 PF03739 Lipopolysaccharide export system permease LptF/LptG VA249_RS12385 PF03739 Lipopolysaccharide export system permease LptF/LptG VA249_RS12390 PF02789 Cytosol aminopeptidase family, N-terminal domain VA249_RS12390 PF00883 Cytosol aminopeptidase family, catalytic domain VA249_RS12395 PF04364 DNA polymerase III chi subunit, HolC VA249_RS12400 PF00133 tRNA synthetases class I (I, L, M and V) VA249_RS12400 PF10458 Valyl tRNA synthetase tRNA binding arm VA249_RS12400 PF08264 Anticodon-binding domain of tRNA VA249_RS12410 PF00583 Acetyltransferase (GNAT) family VA249_RS12420 PF06877 Regulator of ribonuclease activity B VA249_RS12430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VA249_RS12430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VA249_RS12440 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VA249_RS12440 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VA249_RS12445 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VA249_RS12445 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VA249_RS12450 PF01042 Endoribonuclease L-PSP VA249_RS12455 PF01553 Acyltransferase VA249_RS12460 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VA249_RS12465 PF01722 BolA-like protein VA249_RS12475 PF05494 MlaC protein VA249_RS12480 PF02470 MlaD protein VA249_RS12485 PF02405 Permease MlaE VA249_RS12490 PF00005 ABC transporter VA249_RS12495 PF01699 Sodium/calcium exchanger protein VA249_RS12500 PF01380 SIS domain VA249_RS12500 PF00571 CBS domain VA249_RS12510 PF03968 OstA-like protein VA249_RS12515 PF00005 ABC transporter VA249_RS12515 PF12399 Branched-chain amino acid ATP-binding cassette transporter VA249_RS12520 PF00309 Sigma-54 factor, Activator interacting domain (AID) VA249_RS12520 PF04552 Sigma-54, DNA binding domain VA249_RS12520 PF04963 Sigma-54 factor, core binding domain VA249_RS12525 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VA249_RS12530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_RS12535 PF03668 P-loop ATPase protein family VA249_RS12540 PF00381 PTS HPr component phosphorylation site VA249_RS12545 PF00571 CBS domain VA249_RS12545 PF03448 MgtE intracellular N domain VA249_RS12545 PF01769 Divalent cation transporter VA249_RS12550 PF01523 Putative modulator of DNA gyrase VA249_RS12555 PF04751 Protein of unknown function (DUF615) VA249_RS12560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_RS12560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_RS12565 PF00849 RNA pseudouridylate synthase VA249_RS12570 PF18337 RapA N-terminal Tudor like domain VA249_RS12570 PF18339 RapA N-terminal Tudor like domain 1 VA249_RS12570 PF00176 SNF2 family N-terminal domain VA249_RS12570 PF12137 RNA polymerase recycling family C-terminal VA249_RS12570 PF00271 Helicase conserved C-terminal domain VA249_RS12575 PF02562 PhoH-like protein VA249_RS12575 PF13638 PIN domain VA249_RS12580 PF01523 Putative modulator of DNA gyrase VA249_RS12585 PF00795 Carbon-nitrogen hydrolase VA249_RS12590 PF13502 AsmA-like C-terminal region VA249_RS12590 PF13116 Protein of unknown function VA249_RS12595 PF10150 Ribonuclease E/G family VA249_RS12595 PF00575 S1 RNA binding domain VA249_RS12600 PF02545 Maf-like protein VA249_RS12605 PF04093 rod shape-determining protein MreD VA249_RS12610 PF04085 rod shape-determining protein MreC VA249_RS12650 PF07963 Prokaryotic N-terminal methylation motif VA249_RS12660 PF00482 Type II secretion system (T2SS), protein F VA249_RS12665 PF00437 Type II/IV secretion system protein VA249_RS12665 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VA249_RS12675 PF13401 AAA domain VA249_RS12675 PF01471 Putative peptidoglycan binding domain VA249_RS12680 PF00263 Bacterial type II and III secretion system protein VA249_RS12680 PF03958 Bacterial type II/III secretion system short domain VA249_RS12700 PF00563 EAL domain VA249_RS12700 PF17157 Gammaproteobacterial periplasmic sensor domain VA249_RS12700 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS12705 PF00436 Single-strand binding protein family VA249_RS12710 PF00196 Bacterial regulatory proteins, luxR family VA249_RS12715 PF00483 Nucleotidyl transferase VA249_RS12720 PF00005 ABC transporter VA249_RS12720 PF17755 UvrA DNA-binding domain VA249_RS12720 PF17760 UvrA interaction domain VA249_RS12730 PF00266 Aminotransferase class-V VA249_RS12735 PF00696 Amino acid kinase family VA249_RS12735 PF01842 ACT domain VA249_RS12740 PF02310 B12 binding domain VA249_RS12740 PF02607 B12 binding domain VA249_RS12740 PF02965 Vitamin B12 dependent methionine synthase, activation domain VA249_RS12740 PF00809 Pterin binding enzyme VA249_RS12740 PF02574 Homocysteine S-methyltransferase VA249_RS12745 PF00999 Sodium/hydrogen exchanger family VA249_RS12830 PF01507 Phosphoadenosine phosphosulfate reductase family VA249_RS12835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA249_RS12835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA249_RS12840 PF00175 Oxidoreductase NAD-binding domain VA249_RS12840 PF00258 Flavodoxin VA249_RS12840 PF00667 FAD binding domain VA249_RS12860 PF01207 Dihydrouridine synthase (Dus) VA249_RS12865 PF01475 Ferric uptake regulator family VA249_RS12875 PF00342 Phosphoglucose isomerase VA249_RS12880 PF01894 Uncharacterised protein family UPF0047 VA249_RS12890 PF00842 Alanine racemase, C-terminal domain VA249_RS12890 PF01168 Alanine racemase, N-terminal domain VA249_RS12895 PF00772 DnaB-like helicase N terminal domain VA249_RS12895 PF03796 DnaB-like helicase C terminal domain VA249_RS12905 PF01281 Ribosomal protein L9, N-terminal domain VA249_RS12905 PF03948 Ribosomal protein L9, C-terminal domain VA249_RS12910 PF01084 Ribosomal protein S18 VA249_RS12915 PF00436 Single-strand binding protein family VA249_RS12920 PF01250 Ribosomal protein S6 VA249_RS12925 PF00834 Ribulose-phosphate 3 epimerase family VA249_RS12930 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA249_RS12940 PF01761 3-dehydroquinate synthase VA249_RS12945 PF01202 Shikimate kinase VA249_RS12950 PF07660 Secretin and TonB N terminus short domain VA249_RS12950 PF00263 Bacterial type II and III secretion system protein VA249_RS12950 PF11741 AMIN domain VA249_RS12950 PF03958 Bacterial type II/III secretion system short domain VA249_RS12975 PF17092 Penicillin-binding protein OB-like domain VA249_RS12975 PF00912 Transglycosylase VA249_RS12975 PF00905 Penicillin binding protein transpeptidase domain VA249_RS12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS12980 PF03466 LysR substrate binding domain VA249_RS12985 PF00462 Glutaredoxin VA249_RS12985 PF08534 Redoxin VA249_RS12995 PF00206 Lyase VA249_RS12995 PF14698 Argininosuccinate lyase C-terminal VA249_RS12995 PF00583 Acetyltransferase (GNAT) family VA249_RS13000 PF00764 Arginosuccinate synthase VA249_RS13005 PF00696 Amino acid kinase family VA249_RS13010 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_RS13010 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_RS13015 PF07687 Peptidase dimerisation domain VA249_RS13015 PF01546 Peptidase family M20/M25/M40 VA249_RS13020 PF00311 Phosphoenolpyruvate carboxylase VA249_RS13030 PF02219 Methylenetetrahydrofolate reductase VA249_RS13035 PF00696 Amino acid kinase family VA249_RS13035 PF03447 Homoserine dehydrogenase, NAD binding domain VA249_RS13035 PF00742 Homoserine dehydrogenase VA249_RS13040 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_RS13045 PF01340 Met Apo-repressor, MetJ VA249_RS13050 PF00390 Malic enzyme, N-terminal domain VA249_RS13050 PF03949 Malic enzyme, NAD binding domain VA249_RS13055 PF00210 Ferritin-like domain VA249_RS13060 PF04324 BFD-like [2Fe-2S] binding domain VA249_RS13065 PF00009 Elongation factor Tu GTP binding domain VA249_RS13065 PF03144 Elongation factor Tu domain 2 VA249_RS13065 PF03143 Elongation factor Tu C-terminal domain VA249_RS13070 PF03144 Elongation factor Tu domain 2 VA249_RS13070 PF00009 Elongation factor Tu GTP binding domain VA249_RS13070 PF14492 Elongation Factor G, domain II VA249_RS13070 PF03764 Elongation factor G, domain IV VA249_RS13070 PF00679 Elongation factor G C-terminus VA249_RS13075 PF00177 Ribosomal protein S7p/S5e VA249_RS13080 PF00164 Ribosomal protein S12/S23 VA249_RS13085 PF04077 DsrH like protein VA249_RS13090 PF02635 DsrE/DsrF-like family VA249_RS13095 PF02635 DsrE/DsrF-like family VA249_RS13100 PF08348 YheO-like PAS domain VA249_RS13100 PF13309 HTH domain VA249_RS13105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_RS13105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA249_RS13115 PF04102 SlyX VA249_RS13120 PF01112 Asparaginase VA249_RS13125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_RS13135 PF02254 TrkA-N domain VA249_RS13135 PF00999 Sodium/hydrogen exchanger family VA249_RS13140 PF02525 Flavodoxin-like fold VA249_RS13145 PF00005 ABC transporter VA249_RS13145 PF12848 ABC transporter VA249_RS13155 PF00561 alpha/beta hydrolase fold VA249_RS13160 PF06794 Uncharacterised protein family (UPF0270) VA249_RS13165 PF00485 Phosphoribulokinase / Uridine kinase family VA249_RS13170 PF00027 Cyclic nucleotide-binding domain VA249_RS13170 PF13545 Crp-like helix-turn-helix domain VA249_RS13180 PF00171 Aldehyde dehydrogenase family VA249_RS13185 PF04958 Arginine N-succinyltransferase beta subunit VA249_RS13190 PF00202 Aminotransferase class-III VA249_RS13195 PF00117 Glutamine amidotransferase class-I VA249_RS13200 PF00579 tRNA synthetases class I (W and Y) VA249_RS13205 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS13210 PF00588 SpoU rRNA Methylase family VA249_RS13210 PF08032 RNA 2'-O ribose methyltransferase substrate binding VA249_RS13215 PF17876 Cold shock domain VA249_RS13215 PF08461 Ribonuclease R winged-helix domain VA249_RS13215 PF08206 Ribonuclease B OB domain VA249_RS13215 PF00773 RNB domain VA249_RS13215 PF00575 S1 RNA binding domain VA249_RS13220 PF02082 Transcriptional regulator VA249_RS13225 PF00042 Globin VA249_RS13225 PF00175 Oxidoreductase NAD-binding domain VA249_RS13225 PF00970 Oxidoreductase FAD-binding domain VA249_RS13230 PF08238 Sel1 repeat VA249_RS13235 PF00709 Adenylosuccinate synthetase VA249_RS13240 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VA249_RS13245 PF01145 SPFH domain / Band 7 family VA249_RS13250 PF01145 SPFH domain / Band 7 family VA249_RS13250 PF12221 Bacterial membrane protein N terminal VA249_RS13255 PF01926 50S ribosome-binding GTPase VA249_RS13255 PF16360 GTP-binding GTPase Middle Region VA249_RS13255 PF13167 GTP-binding GTPase N-terminal VA249_RS13260 PF17209 Hfq protein VA249_RS13270 PF08676 MutL C terminal dimerisation domain VA249_RS13270 PF01119 DNA mismatch repair protein, C-terminal domain VA249_RS13275 PF01520 N-acetylmuramoyl-L-alanine amidase VA249_RS13280 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VA249_RS13285 PF08331 Domain of unknown function (DUF1730) VA249_RS13360 PF00929 Exonuclease VA249_RS13365 PF03193 RsgA GTPase VA249_RS13370 PF02666 Phosphatidylserine decarboxylase VA249_RS13380 PF00939 Sodium:sulfate symporter transmembrane region VA249_RS13385 PF00672 HAMP domain VA249_RS13385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS13385 PF02743 Cache domain VA249_RS13400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VA249_RS13400 PF01676 Metalloenzyme superfamily VA249_RS13405 PF00581 Rhodanese-like domain VA249_RS13410 PF02556 Preprotein translocase subunit SecB VA249_RS13415 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VA249_RS13415 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VA249_RS13420 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS13420 PF06426 Serine acetyltransferase, N-terminal VA249_RS13425 PF01551 Peptidase family M23 VA249_RS13435 PF08360 QacR-like protein, C-terminal region VA249_RS13435 PF00440 Bacterial regulatory proteins, tetR family VA249_RS13445 PF00152 tRNA synthetases class II (D, K and N) VA249_RS13450 PF00890 FAD binding domain VA249_RS13450 PF02910 Fumarate reductase flavoprotein C-term VA249_RS13455 PF13085 2Fe-2S iron-sulfur cluster binding domain VA249_RS13455 PF13183 4Fe-4S dicluster domain VA249_RS13460 PF02300 Fumarate reductase subunit C VA249_RS13465 PF02313 Fumarate reductase subunit D VA249_RS13470 PF08207 Elongation factor P (EF-P) KOW-like domain VA249_RS13470 PF09285 Elongation factor P, C-terminal VA249_RS13470 PF01132 Elongation factor P (EF-P) OB domain VA249_RS13475 PF04055 Radical SAM superfamily VA249_RS13480 PF02308 MgtC family VA249_RS13490 PF00118 TCP-1/cpn60 chaperonin family VA249_RS13495 PF00166 Chaperonin 10 Kd subunit VA249_RS13500 PF01554 MatE VA249_RS13505 PF00365 Phosphofructokinase VA249_RS13510 PF16916 Dimerisation domain of Zinc Transporter VA249_RS13510 PF01545 Cation efflux family VA249_RS13515 PF07813 LTXXQ motif family protein VA249_RS13520 PF00486 Transcriptional regulatory protein, C terminal VA249_RS13520 PF00072 Response regulator receiver domain VA249_RS13525 PF00672 HAMP domain VA249_RS13525 PF16527 Two-component sensor protein CpxA, periplasmic domain VA249_RS13525 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS13525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS13530 PF00588 SpoU rRNA Methylase family VA249_RS13535 PF04186 FxsA cytoplasmic membrane protein VA249_RS13540 PF00206 Lyase VA249_RS13540 PF10415 Fumarase C C-terminus VA249_RS13545 PF03605 Anaerobic c4-dicarboxylate membrane transporter VA249_RS13550 PF02683 Cytochrome C biogenesis protein transmembrane region VA249_RS13550 PF11412 Disulphide bond corrector protein DsbC VA249_RS13555 PF00072 Response regulator receiver domain VA249_RS13555 PF00196 Bacterial regulatory proteins, luxR family VA249_RS13560 PF01914 MarC family integral membrane protein VA249_RS13570 PF00474 Sodium:solute symporter family VA249_RS13580 PF01627 Hpt domain VA249_RS13580 PF00672 HAMP domain VA249_RS13580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS13580 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS13580 PF00072 Response regulator receiver domain VA249_RS13585 PF12832 MFS_1 like family VA249_RS13600 PF00501 AMP-binding enzyme VA249_RS13600 PF16177 Acetyl-coenzyme A synthetase N-terminus VA249_RS13600 PF13193 AMP-binding enzyme C-terminal domain VA249_RS13605 PF01220 Dehydroquinase class II VA249_RS13610 PF00364 Biotin-requiring enzyme VA249_RS13615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA249_RS13615 PF00289 Biotin carboxylase, N-terminal domain VA249_RS13615 PF02785 Biotin carboxylase C-terminal domain VA249_RS13625 PF01207 Dihydrouridine synthase (Dus) VA249_RS13630 PF02954 Bacterial regulatory protein, Fis family VA249_RS13635 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS13635 PF08448 PAS fold VA249_RS13715 PF01276 Orn/Lys/Arg decarboxylase, major domain VA249_RS13715 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VA249_RS13715 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VA249_RS13720 PF13520 Amino acid permease VA249_RS13725 PF00486 Transcriptional regulatory protein, C terminal VA249_RS13725 PF18500 CadC C-terminal domain 1 VA249_RS13730 PF13411 MerR HTH family regulatory protein VA249_RS13735 PF02142 MGS-like domain VA249_RS13735 PF01808 AICARFT/IMPCHase bienzyme VA249_RS13740 PF02843 Phosphoribosylglycinamide synthetase, C domain VA249_RS13740 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VA249_RS13740 PF02844 Phosphoribosylglycinamide synthetase, N domain VA249_RS13755 PF00216 Bacterial DNA-binding protein VA249_RS13760 PF00571 CBS domain VA249_RS13760 PF01595 Cyclin M transmembrane N-terminal domain VA249_RS13770 PF04222 Protein of unknown function (DUF416) VA249_RS13775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_RS13780 PF03167 Uracil DNA glycosylase superfamily VA249_RS13785 PF01208 Uroporphyrinogen decarboxylase (URO-D) VA249_RS13790 PF09297 NADH pyrophosphatase zinc ribbon domain VA249_RS13790 PF00293 NUDIX domain VA249_RS13795 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VA249_RS13800 PF00623 RNA polymerase Rpb1, domain 2 VA249_RS13800 PF04983 RNA polymerase Rpb1, domain 3 VA249_RS13800 PF05000 RNA polymerase Rpb1, domain 4 VA249_RS13800 PF04998 RNA polymerase Rpb1, domain 5 VA249_RS13800 PF04997 RNA polymerase Rpb1, domain 1 VA249_RS13805 PF04560 RNA polymerase Rpb2, domain 7 VA249_RS13805 PF10385 RNA polymerase beta subunit external 1 domain VA249_RS13805 PF04565 RNA polymerase Rpb2, domain 3 VA249_RS13805 PF04561 RNA polymerase Rpb2, domain 2 VA249_RS13805 PF00562 RNA polymerase Rpb2, domain 6 VA249_RS13805 PF04563 RNA polymerase beta subunit VA249_RS13810 PF00542 Ribosomal protein L7/L12 C-terminal domain VA249_RS13810 PF16320 Ribosomal protein L7/L12 dimerisation domain VA249_RS13815 PF00466 Ribosomal protein L10 VA249_RS13820 PF00687 Ribosomal protein L1p/L10e family VA249_RS13825 PF00298 Ribosomal protein L11, RNA binding domain VA249_RS13825 PF03946 Ribosomal protein L11, N-terminal domain VA249_RS13830 PF02357 Transcription termination factor nusG VA249_RS13830 PF00467 KOW motif VA249_RS13835 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VA249_RS13840 PF00009 Elongation factor Tu GTP binding domain VA249_RS13840 PF03144 Elongation factor Tu domain 2 VA249_RS13840 PF03143 Elongation factor Tu C-terminal domain VA249_RS13865 PF00485 Phosphoribulokinase / Uridine kinase family VA249_RS13870 PF03099 Biotin/lipoate A/B protein ligase family VA249_RS13870 PF08279 HTH domain VA249_RS13870 PF02237 Biotin protein ligase C terminal domain VA249_RS13875 PF01565 FAD binding domain VA249_RS13875 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VA249_RS13885 PF13091 PLD-like domain VA249_RS13920 PF01177 Asp/Glu/Hydantoin racemase VA249_RS13930 PF07715 TonB-dependent Receptor Plug Domain VA249_RS13930 PF00593 TonB dependent receptor VA249_RS13935 PF05958 tRNA (Uracil-5-)-methyltransferase VA249_RS13945 PF00440 Bacterial regulatory proteins, tetR family VA249_RS13950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_RS13950 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS13955 PF01554 MatE VA249_RS13965 PF01726 LexA DNA binding domain VA249_RS13965 PF00717 Peptidase S24-like VA249_RS13970 PF01553 Acyltransferase VA249_RS13980 PF01040 UbiA prenyltransferase family VA249_RS13985 PF04345 Chorismate lyase VA249_RS13990 PF03748 Flagellar basal body-associated protein FliL VA249_RS13995 PF01694 Rhomboid family VA249_RS13995 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VA249_RS14000 PF00581 Rhodanese-like domain VA249_RS14005 PF00140 Sigma-70 factor, region 1.2 VA249_RS14005 PF04545 Sigma-70, region 4 VA249_RS14005 PF04542 Sigma-70 region 2 VA249_RS14010 PF18075 FtsX extracellular domain VA249_RS14015 PF00005 ABC transporter VA249_RS14020 PF02881 SRP54-type protein, helical bundle domain VA249_RS14020 PF00448 SRP54-type protein, GTPase domain VA249_RS14050 PF10694 Protein of unknown function (DUF2500) VA249_RS14075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_RS14075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_RS14080 PF01022 Bacterial regulatory protein, arsR family VA249_RS14085 PF01810 LysE type translocator VA249_RS14090 PF12146 Serine aminopeptidase, S33 VA249_RS14110 PF03942 DTW domain VA249_RS14115 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS14120 PF00589 Phage integrase family VA249_RS14120 PF02899 Phage integrase, N-terminal SAM-like domain VA249_RS14130 PF01678 Diaminopimelate epimerase VA249_RS14135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA249_RS14135 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA249_RS14145 PF01491 Frataxin-like domain VA249_RS14150 PF12633 Adenylate cyclase NT domain VA249_RS14150 PF01295 Adenylate cyclase, class-I VA249_RS14155 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VA249_RS14155 PF03900 Porphobilinogen deaminase, C-terminal domain VA249_RS14160 PF02602 Uroporphyrinogen-III synthase HemD VA249_RS14165 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VA249_RS14205 PF00175 Oxidoreductase NAD-binding domain VA249_RS14210 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_RS14215 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VA249_RS14225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_RS14225 PF07497 Rho termination factor, RNA-binding domain VA249_RS14225 PF07498 Rho termination factor, N-terminal domain VA249_RS14230 PF00085 Thioredoxin VA249_RS14235 PF00270 DEAD/DEAH box helicase VA249_RS14235 PF00271 Helicase conserved C-terminal domain VA249_RS14240 PF02541 Ppx/GppA phosphatase family VA249_RS14245 PF02592 Putative vitamin uptake transporter VA249_RS14255 PF00570 HRDC domain VA249_RS14255 PF00271 Helicase conserved C-terminal domain VA249_RS14255 PF00270 DEAD/DEAH box helicase VA249_RS14255 PF09382 RQC domain VA249_RS14255 PF16124 RecQ zinc-binding VA249_RS14260 PF00892 EamA-like transporter family VA249_RS14270 PF01810 LysE type translocator VA249_RS14280 PF00580 UvrD/REP helicase N-terminal domain VA249_RS14280 PF13361 UvrD-like helicase C-terminal domain VA249_RS14290 PF05114 Protein of unknown function (DUF692) VA249_RS14310 PF07690 Major Facilitator Superfamily VA249_RS14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS14315 PF03466 LysR substrate binding domain VA249_RS14320 PF01321 Creatinase/Prolidase N-terminal domain VA249_RS14320 PF00557 Metallopeptidase family M24 VA249_RS14320 PF01321 Creatinase/Prolidase N-terminal domain VA249_RS14320 PF00557 Metallopeptidase family M24 VA249_RS14325 PF06968 Biotin and Thiamin Synthesis associated domain VA249_RS14325 PF04055 Radical SAM superfamily VA249_RS14330 PF05690 Thiazole biosynthesis protein ThiG VA249_RS14335 PF02597 ThiS family VA249_RS14340 PF00899 ThiF family VA249_RS14345 PF02581 Thiamine monophosphate synthase VA249_RS14350 PF01964 Radical SAM ThiC family VA249_RS14350 PF13667 ThiC-associated domain VA249_RS14355 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VA249_RS14395 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS14400 PF07369 Protein of unknown function (DUF1488) VA249_RS14405 PF01488 Shikimate / quinate 5-dehydrogenase VA249_RS14405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VA249_RS14405 PF08501 Shikimate dehydrogenase substrate binding domain VA249_RS14410 PF01218 Coproporphyrinogen III oxidase VA249_RS14415 PF01300 Telomere recombination VA249_RS14420 PF00731 AIR carboxylase VA249_RS14425 PF02222 ATP-grasp domain VA249_RS14425 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VA249_RS14430 PF01396 Topoisomerase DNA binding C4 zinc finger VA249_RS14435 PF04361 Protein of unknown function (DUF494) VA249_RS14440 PF02481 DNA recombination-mediator protein A VA249_RS14440 PF17782 DprA winged helix domain VA249_RS14450 PF01327 Polypeptide deformylase VA249_RS14455 PF02911 Formyl transferase, C-terminal domain VA249_RS14455 PF00551 Formyl transferase VA249_RS14460 PF01189 16S rRNA methyltransferase RsmB/F VA249_RS14460 PF01029 NusB family VA249_RS14465 PF02254 TrkA-N domain VA249_RS14465 PF02080 TrkA-C domain VA249_RS14470 PF02386 Cation transport protein VA249_RS14480 PF03006 Haemolysin-III related VA249_RS14485 PF07070 SpoOM protein VA249_RS14495 PF06288 Protein of unknown function (DUF1040) VA249_RS14500 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VA249_RS14500 PF13746 4Fe-4S dicluster domain VA249_RS14500 PF12801 4Fe-4S binding domain VA249_RS14505 PF01636 Phosphotransferase enzyme family VA249_RS14510 PF01323 DSBA-like thioredoxin domain VA249_RS14515 PF01553 Acyltransferase VA249_RS14525 PF01078 Magnesium chelatase, subunit ChlI VA249_RS14525 PF13335 Magnesium chelatase, subunit ChlI C-terminal VA249_RS14530 PF00205 Thiamine pyrophosphate enzyme, central domain VA249_RS14530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_RS14530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_RS14540 PF01063 Amino-transferase class IV VA249_RS14545 PF00920 Dehydratase family VA249_RS14550 PF00291 Pyridoxal-phosphate dependent enzyme VA249_RS14550 PF00585 C-terminal regulatory domain of Threonine dehydratase VA249_RS14555 PF03466 LysR substrate binding domain VA249_RS14555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS14560 PF07690 Major Facilitator Superfamily VA249_RS14565 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS14565 PF12804 MobA-like NTP transferase domain VA249_RS14570 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VA249_RS14570 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VA249_RS14575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_RS14575 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA249_RS14580 PF00231 ATP synthase VA249_RS14585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_RS14585 PF00306 ATP synthase alpha/beta chain, C terminal domain VA249_RS14585 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA249_RS14590 PF00213 ATP synthase delta (OSCP) subunit VA249_RS14595 PF00430 ATP synthase B/B' CF(0) VA249_RS14600 PF00137 ATP synthase subunit C VA249_RS14605 PF00119 ATP synthase A chain VA249_RS14610 PF03899 ATP synthase I chain VA249_RS14615 PF17762 HTH domain found in ParB protein VA249_RS14615 PF02195 ParB-like nuclease domain VA249_RS14620 PF13614 AAA domain VA249_RS14625 PF02527 rRNA small subunit methyltransferase G VA249_RS14630 PF13932 GidA associated domain VA249_RS14630 PF01134 Glucose inhibited division protein A VA249_RS14635 PF00258 Flavodoxin VA249_RS14640 PF01926 50S ribosome-binding GTPase VA249_RS14640 PF10396 GTP-binding protein TrmE N-terminus VA249_RS14640 PF12631 MnmE helical domain VA249_RS14645 PF14849 YidC periplasmic domain VA249_RS14645 PF02096 60Kd inner membrane protein VA249_RS14650 PF01809 Putative membrane protein insertion efficiency factor VA249_RS14655 PF00825 Ribonuclease P VA249_RS14660 PF00468 Ribosomal protein L34 VA249_RS14665 PF00005 ABC transporter VA249_RS14670 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS14675 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS14685 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS14690 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS14695 PF00232 Glycosyl hydrolase family 1 VA249_RS14700 PF00005 ABC transporter VA249_RS14700 PF08402 TOBE domain VA249_RS14705 PF00356 Bacterial regulatory proteins, lacI family VA249_RS14715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS14720 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS14725 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS14725 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_RS14730 PF00005 ABC transporter VA249_RS14730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS14735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_RS14735 PF00005 ABC transporter VA249_RS14745 PF00356 Bacterial regulatory proteins, lacI family VA249_RS14760 PF12833 Helix-turn-helix domain VA249_RS14765 PF01915 Glycosyl hydrolase family 3 C-terminal domain VA249_RS14765 PF14310 Fibronectin type III-like domain VA249_RS14765 PF00933 Glycosyl hydrolase family 3 N terminal domain VA249_RS14770 PF01554 MatE VA249_RS14780 PF03480 Bacterial extracellular solute-binding protein, family 7 VA249_RS14785 PF00849 RNA pseudouridylate synthase VA249_RS14800 PF17152 Periplasmic sensor domain VA249_RS14800 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS14810 PF05656 Protein of unknown function (DUF805) VA249_RS14815 PF00756 Putative esterase VA249_RS14820 PF08240 Alcohol dehydrogenase GroES-like domain VA249_RS14820 PF00107 Zinc-binding dehydrogenase VA249_RS14825 PF00797 N-acetyltransferase VA249_RS14830 PF03466 LysR substrate binding domain VA249_RS14830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS14840 PF00326 Prolyl oligopeptidase family VA249_RS14850 PF01810 LysE type translocator VA249_RS14855 PF01037 Lrp/AsnC ligand binding domain VA249_RS14865 PF00893 Small Multidrug Resistance protein VA249_RS14875 PF01554 MatE VA249_RS14890 PF13599 Pentapeptide repeats (9 copies) VA249_RS14895 PF03922 OmpW family VA249_RS14900 PF16868 NMT1-like family VA249_RS14910 PF13533 Biotin-lipoyl like VA249_RS14915 PF07690 Major Facilitator Superfamily VA249_RS14925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS14930 PF01810 LysE type translocator VA249_RS14935 PF00672 HAMP domain VA249_RS14935 PF02743 Cache domain VA249_RS14935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS14975 PF00114 Pilin (bacterial filament) VA249_RS14975 PF07963 Prokaryotic N-terminal methylation motif VA249_RS15005 PF03264 NapC/NirT cytochrome c family, N-terminal region VA249_RS15010 PF00384 Molybdopterin oxidoreductase VA249_RS15010 PF18364 Molybdopterin oxidoreductase N-terminal domain VA249_RS15010 PF01568 Molydopterin dinucleotide binding domain VA249_RS15020 PF02581 Thiamine monophosphate synthase VA249_RS15025 PF02110 Hydroxyethylthiazole kinase family VA249_RS15030 PF03070 TENA/THI-4/PQQC family VA249_RS15035 PF09084 NMT1/THI5 like VA249_RS15040 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS15045 PF00005 ABC transporter VA249_RS15050 PF08543 Phosphomethylpyrimidine kinase VA249_RS15055 PF01523 Putative modulator of DNA gyrase VA249_RS15060 PF01523 Putative modulator of DNA gyrase VA249_RS15065 PF04013 Putative SAM-dependent RNA methyltransferase VA249_RS15125 PF10928 Protein of unknown function (DUF2810) VA249_RS15130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_RS15130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_RS15140 PF03009 Glycerophosphoryl diester phosphodiesterase family VA249_RS15145 PF00072 Response regulator receiver domain VA249_RS15145 PF00486 Transcriptional regulatory protein, C terminal VA249_RS15150 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS15150 PF00672 HAMP domain VA249_RS15150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS15150 PF16750 Sensor domain of 2-component histidine kinase VA249_RS15155 PF07715 TonB-dependent Receptor Plug Domain VA249_RS15155 PF00593 TonB dependent receptor VA249_RS15165 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS15170 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS15175 PF02472 Biopolymer transport protein ExbD/TolR VA249_RS15190 PF13609 Gram-negative porin VA249_RS15195 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA249_RS15195 PF00326 Prolyl oligopeptidase family VA249_RS15200 PF07690 Major Facilitator Superfamily VA249_RS15205 PF00491 Arginase family VA249_RS15210 PF17944 Arginine decarboxylase C-terminal helical extension VA249_RS15210 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA249_RS15210 PF17810 Arginine decarboxylase helical bundle domain VA249_RS15215 PF00753 Metallo-beta-lactamase superfamily VA249_RS15220 PF18030 RimK PreATP-grasp domain VA249_RS15220 PF08443 RimK-like ATP-grasp domain VA249_RS15225 PF18030 RimK PreATP-grasp domain VA249_RS15225 PF08443 RimK-like ATP-grasp domain VA249_RS15230 PF03466 LysR substrate binding domain VA249_RS15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS15245 PF00232 Glycosyl hydrolase family 1 VA249_RS15250 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS15250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS15250 PF02743 Cache domain VA249_RS15255 PF00072 Response regulator receiver domain VA249_RS15255 PF02954 Bacterial regulatory protein, Fis family VA249_RS15255 PF00158 Sigma-54 interaction domain VA249_RS15260 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS15260 PF08448 PAS fold VA249_RS15265 PF05525 Branched-chain amino acid transport protein VA249_RS15280 PF01266 FAD dependent oxidoreductase VA249_RS15290 PF03116 NQR2, RnfD, RnfE family VA249_RS15295 PF01212 Beta-eliminating lyase VA249_RS15310 PF07670 Nucleoside recognition VA249_RS15310 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_RS15310 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_RS15320 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS15320 PF00563 EAL domain VA249_RS15320 PF03707 Bacterial signalling protein N terminal repeat VA249_RS15335 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS15340 PF00875 DNA photolyase VA249_RS15340 PF03441 FAD binding domain of DNA photolyase VA249_RS15345 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VA249_RS15360 PF01625 Peptide methionine sulfoxide reductase VA249_RS15360 PF01641 SelR domain VA249_RS15365 PF02566 OsmC-like protein VA249_RS15370 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS15370 PF14602 Hexapeptide repeat of succinyl-transferase VA249_RS15370 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VA249_RS15390 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS15410 PF00924 Mechanosensitive ion channel VA249_RS15410 PF12795 Mechanosensitive ion channel porin domain VA249_RS15410 PF12794 Mechanosensitive ion channel inner membrane domain 1 VA249_RS15415 PF18027 Cytosolic carboxypeptidase N-terminal domain VA249_RS15415 PF00246 Zinc carboxypeptidase VA249_RS15420 PF00691 OmpA family VA249_RS15420 PF01389 OmpA-like transmembrane domain VA249_RS15430 PF01566 Natural resistance-associated macrophage protein VA249_RS15435 PF00854 POT family VA249_RS15440 PF03315 Serine dehydratase beta chain VA249_RS15440 PF03313 Serine dehydratase alpha chain VA249_RS15465 PF01464 Transglycosylase SLT domain VA249_RS15465 PF01476 LysM domain VA249_RS15485 PF00460 Flagella basal body rod protein VA249_RS15490 PF00460 Flagella basal body rod protein VA249_RS15490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS15495 PF03963 Flagellar hook capping protein - N-terminal region VA249_RS15495 PF13860 FlgD Ig-like domain VA249_RS15495 PF13861 FlgD Tudor-like domain VA249_RS15500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS15500 PF00460 Flagella basal body rod protein VA249_RS15500 PF07559 Flagellar basal body protein FlaE VA249_RS15505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS15505 PF00460 Flagella basal body rod protein VA249_RS15510 PF00460 Flagella basal body rod protein VA249_RS15510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS15515 PF02107 Flagellar L-ring protein VA249_RS15520 PF02119 Flagellar P-ring protein VA249_RS15525 PF10135 Rod binding protein VA249_RS15525 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VA249_RS15530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_RS15530 PF00460 Flagella basal body rod protein VA249_RS15545 PF13472 GDSL-like Lipase/Acylhydrolase family VA249_RS15545 PF02348 Cytidylyltransferase VA249_RS15550 PF03102 NeuB family VA249_RS15550 PF08666 SAF domain VA249_RS15555 PF02350 UDP-N-acetylglucosamine 2-epimerase VA249_RS15575 PF01070 FMN-dependent dehydrogenase VA249_RS15580 PF03466 LysR substrate binding domain VA249_RS15580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS15605 PF00691 OmpA family VA249_RS15605 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA249_RS15610 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS15615 PF04542 Sigma-70 region 2 VA249_RS15615 PF04545 Sigma-70, region 4 VA249_RS15620 PF03748 Flagellar basal body-associated protein FliL VA249_RS15635 PF02561 Flagellar protein FliS VA249_RS15640 PF07195 Flagellar hook-associated protein 2 C-terminus VA249_RS15640 PF02465 Flagellar hook-associated protein 2 N-terminus VA249_RS15640 PF07196 Flagellin hook IN motif VA249_RS15655 PF00669 Bacterial flagellin N-terminal helical region VA249_RS15655 PF00700 Bacterial flagellin C-terminal helical region VA249_RS15665 PF00771 FHIPEP family VA249_RS15670 PF01312 FlhB HrpN YscU SpaS Family VA249_RS15675 PF01311 Bacterial export proteins, family 1 VA249_RS15680 PF01313 Bacterial export proteins, family 3 VA249_RS15685 PF00813 FliP family VA249_RS15690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA249_RS15705 PF00072 Response regulator receiver domain VA249_RS15705 PF00158 Sigma-54 interaction domain VA249_RS15705 PF02954 Bacterial regulatory protein, Fis family VA249_RS15710 PF02049 Flagellar hook-basal body complex protein FliE VA249_RS15715 PF01514 Secretory protein of YscJ/FliF family VA249_RS15715 PF08345 Flagellar M-ring protein C-terminal VA249_RS15720 PF14842 FliG N-terminal domain VA249_RS15720 PF01706 FliG C-terminal domain VA249_RS15720 PF14841 FliG middle domain VA249_RS15730 PF18269 T3SS EscN ATPase C-terminal domain VA249_RS15730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_RS15755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS15760 PF03466 LysR substrate binding domain VA249_RS15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS15780 PF00486 Transcriptional regulatory protein, C terminal VA249_RS15780 PF00072 Response regulator receiver domain VA249_RS15785 PF08448 PAS fold VA249_RS15785 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS15785 PF00072 Response regulator receiver domain VA249_RS15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS15785 PF13426 PAS domain VA249_RS15790 PF00266 Aminotransferase class-V VA249_RS15800 PF03707 Bacterial signalling protein N terminal repeat VA249_RS15800 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS15800 PF00563 EAL domain VA249_RS15805 PF00155 Aminotransferase class I and II VA249_RS15810 PF00107 Zinc-binding dehydrogenase VA249_RS15810 PF08240 Alcohol dehydrogenase GroES-like domain VA249_RS15850 PF00924 Mechanosensitive ion channel VA249_RS15860 PF01070 FMN-dependent dehydrogenase VA249_RS15865 PF03466 LysR substrate binding domain VA249_RS15865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS15870 PF00326 Prolyl oligopeptidase family VA249_RS15870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA249_RS15880 PF13654 AAA domain VA249_RS15880 PF05362 Lon protease (S16) C-terminal proteolytic domain VA249_RS15885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS15885 PF12729 Four helix bundle sensory module for signal transduction VA249_RS15885 PF00672 HAMP domain VA249_RS15890 PF12945 Flagellar protein YcgR VA249_RS15890 PF07238 PilZ domain VA249_RS15895 PF00583 Acetyltransferase (GNAT) family VA249_RS15900 PF12800 4Fe-4S binding domain VA249_RS15900 PF12838 4Fe-4S dicluster domain VA249_RS15905 PF12801 4Fe-4S binding domain VA249_RS15905 PF12837 4Fe-4S binding domain VA249_RS15910 PF01022 Bacterial regulatory protein, arsR family VA249_RS15925 PF00005 ABC transporter VA249_RS15925 PF12558 ATP-binding cassette cobalt transporter VA249_RS15930 PF07155 ECF-type riboflavin transporter, S component VA249_RS15935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS15935 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS15940 PF11742 Protein of unknown function (DUF3302) VA249_RS15950 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS15965 PF01048 Phosphorylase superfamily VA249_RS15970 PF08349 Protein of unknown function (DUF1722) VA249_RS15975 PF13411 MerR HTH family regulatory protein VA249_RS15980 PF03441 FAD binding domain of DNA photolyase VA249_RS15980 PF00875 DNA photolyase VA249_RS15985 PF01476 LysM domain VA249_RS15985 PF03734 L,D-transpeptidase catalytic domain VA249_RS15985 PF17969 L,D-transpeptidase C-terminal domain VA249_RS15995 PF00271 Helicase conserved C-terminal domain VA249_RS15995 PF00270 DEAD/DEAH box helicase VA249_RS16000 PF12849 PBP superfamily domain VA249_RS16005 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS16010 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS16015 PF00005 ABC transporter VA249_RS16020 PF17151 Periplasmic sensor domain VA249_RS16020 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS16030 PF13519 von Willebrand factor type A domain VA249_RS16045 PF01882 Protein of unknown function DUF58 VA249_RS16050 PF07726 ATPase family associated with various cellular activities (AAA) VA249_RS16050 PF17863 AAA lid domain VA249_RS16055 PF00672 HAMP domain VA249_RS16055 PF02743 Cache domain VA249_RS16055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS16065 PF00196 Bacterial regulatory proteins, luxR family VA249_RS16070 PF14602 Hexapeptide repeat of succinyl-transferase VA249_RS16070 PF12464 Maltose acetyltransferase VA249_RS16080 PF00360 Phytochrome region VA249_RS16080 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS16080 PF01590 GAF domain VA249_RS16080 PF00563 EAL domain VA249_RS16095 PF00691 OmpA family VA249_RS16105 PF02378 Phosphotransferase system, EIIC VA249_RS16110 PF02378 Phosphotransferase system, EIIC VA249_RS16115 PF00127 Copper binding proteins, plastocyanin/azurin family VA249_RS16125 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS16130 PF00375 Sodium:dicarboxylate symporter family VA249_RS16135 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS16140 PF10282 Lactonase, 7-bladed beta-propeller VA249_RS16145 PF01161 Phosphatidylethanolamine-binding protein VA249_RS16155 PF01758 Sodium Bile acid symporter family VA249_RS16185 PF03222 Tryptophan/tyrosine permease family VA249_RS16190 PF02743 Cache domain VA249_RS16190 PF00672 HAMP domain VA249_RS16190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS16195 PF07670 Nucleoside recognition VA249_RS16215 PF01476 LysM domain VA249_RS16215 PF08525 Opacity-associated protein A N-terminal motif VA249_RS16215 PF01551 Peptidase family M23 VA249_RS16225 PF00462 Glutaredoxin VA249_RS16230 PF00892 EamA-like transporter family VA249_RS16245 PF01557 Fumarylacetoacetate (FAA) hydrolase family VA249_RS16260 PF01661 Macro domain VA249_RS16265 PF01810 LysE type translocator VA249_RS16270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_RS16270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_RS16270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_RS16270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_RS16275 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VA249_RS16275 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VA249_RS16280 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA249_RS16285 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VA249_RS16290 PF00510 Cytochrome c oxidase subunit III VA249_RS16310 PF02628 Cytochrome oxidase assembly protein VA249_RS16315 PF01040 UbiA prenyltransferase family VA249_RS16320 PF01389 OmpA-like transmembrane domain VA249_RS16320 PF00691 OmpA family VA249_RS16325 PF00793 DAHP synthetase I family VA249_RS16330 PF08447 PAS fold VA249_RS16330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS16335 PF00456 Transketolase, thiamine diphosphate binding domain VA249_RS16335 PF02779 Transketolase, pyrimidine binding domain VA249_RS16335 PF02780 Transketolase, C-terminal domain VA249_RS16340 PF00923 Transaldolase/Fructose-6-phosphate aldolase VA249_RS16350 PF08329 Chitinase A, N-terminal domain VA249_RS16350 PF00704 Glycosyl hydrolases family 18 VA249_RS16355 PF00581 Rhodanese-like domain VA249_RS16375 PF00899 ThiF family VA249_RS16380 PF00994 Probable molybdopterin binding domain VA249_RS16380 PF03454 MoeA C-terminal region (domain IV) VA249_RS16380 PF03453 MoeA N-terminal region (domain I and II) VA249_RS16385 PF01227 GTP cyclohydrolase I VA249_RS16390 PF01566 Natural resistance-associated macrophage protein VA249_RS16400 PF00654 Voltage gated chloride channel VA249_RS16415 PF00248 Aldo/keto reductase family VA249_RS16420 PF00072 Response regulator receiver domain VA249_RS16430 PF03853 YjeF-related protein N-terminus VA249_RS16430 PF01256 Carbohydrate kinase VA249_RS16435 PF00478 IMP dehydrogenase / GMP reductase domain VA249_RS16440 PF03222 Tryptophan/tyrosine permease family VA249_RS16445 PF00691 OmpA family VA249_RS16445 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA249_RS16450 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS16455 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VA249_RS16455 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VA249_RS16455 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VA249_RS16455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_RS16455 PF10371 Domain of unknown function VA249_RS16465 PF13721 SecD export protein N-terminal TM region VA249_RS16465 PF07549 SecD/SecF GG Motif VA249_RS16465 PF02355 Protein export membrane protein VA249_RS16470 PF07549 SecD/SecF GG Motif VA249_RS16470 PF02355 Protein export membrane protein VA249_RS16475 PF03553 Na+/H+ antiporter family VA249_RS16480 PF03616 Sodium/glutamate symporter VA249_RS16490 PF00072 Response regulator receiver domain VA249_RS16490 PF00486 Transcriptional regulatory protein, C terminal VA249_RS16495 PF13493 Domain of unknown function (DUF4118) VA249_RS16495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS16495 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS16495 PF02702 Osmosensitive K+ channel His kinase sensor domain VA249_RS16515 PF00583 Acetyltransferase (GNAT) family VA249_RS16520 PF03358 NADPH-dependent FMN reductase VA249_RS16525 PF00141 Peroxidase VA249_RS16530 PF13533 Biotin-lipoyl like VA249_RS16540 PF01979 Amidohydrolase family VA249_RS16545 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA249_RS16560 PF00440 Bacterial regulatory proteins, tetR family VA249_RS16560 PF13977 BetI-type transcriptional repressor, C-terminal VA249_RS16565 PF00171 Aldehyde dehydrogenase family VA249_RS16570 PF00732 GMC oxidoreductase VA249_RS16570 PF05199 GMC oxidoreductase VA249_RS16575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VA249_RS16580 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS16585 PF00005 ABC transporter VA249_RS16585 PF00571 CBS domain VA249_RS16590 PF00881 Nitroreductase family VA249_RS16595 PF01145 SPFH domain / Band 7 family VA249_RS16610 PF00563 EAL domain VA249_RS16610 PF13188 PAS domain VA249_RS16610 PF03707 Bacterial signalling protein N terminal repeat VA249_RS16610 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS16615 PF09308 LuxQ, periplasmic VA249_RS16615 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS16615 PF00072 Response regulator receiver domain VA249_RS16630 PF04116 Fatty acid hydroxylase superfamily VA249_RS16645 PF01451 Low molecular weight phosphotyrosine protein phosphatase VA249_RS16650 PF00842 Alanine racemase, C-terminal domain VA249_RS16650 PF01757 Acyltransferase family VA249_RS16650 PF01168 Alanine racemase, N-terminal domain VA249_RS16665 PF03808 Glycosyl transferase WecB/TagA/CpsF family VA249_RS16675 PF13439 Glycosyltransferase Family 4 VA249_RS16675 PF00534 Glycosyl transferases group 1 VA249_RS16705 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA249_RS16705 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA249_RS16705 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA249_RS16710 PF02350 UDP-N-acetylglucosamine 2-epimerase VA249_RS16715 PF13807 G-rich domain on putative tyrosine kinase VA249_RS16715 PF02706 Chain length determinant protein VA249_RS16715 PF13614 AAA domain VA249_RS16730 PF02397 Bacterial sugar transferase VA249_RS16760 PF01177 Asp/Glu/Hydantoin racemase VA249_RS16770 PF01048 Phosphorylase superfamily VA249_RS16775 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS16775 PF00563 EAL domain VA249_RS16780 PF05025 RbsD / FucU transport protein family VA249_RS16785 PF07690 Major Facilitator Superfamily VA249_RS16795 PF00294 pfkB family carbohydrate kinase VA249_RS16800 PF00356 Bacterial regulatory proteins, lacI family VA249_RS16810 PF13411 MerR HTH family regulatory protein VA249_RS16830 PF12805 FUSC-like inner membrane protein yccS VA249_RS16835 PF13361 UvrD-like helicase C-terminal domain VA249_RS16835 PF00580 UvrD/REP helicase N-terminal domain VA249_RS16835 PF12462 DNA helicase IV / RNA helicase N terminal VA249_RS16840 PF02142 MGS-like domain VA249_RS16845 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_RS16850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS16850 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS16850 PF01627 Hpt domain VA249_RS16850 PF00072 Response regulator receiver domain VA249_RS16850 PF00672 HAMP domain VA249_RS16870 PF00884 Sulfatase VA249_RS16875 PF00884 Sulfatase VA249_RS16885 PF07726 ATPase family associated with various cellular activities (AAA) VA249_RS16885 PF17863 AAA lid domain VA249_RS16900 PF00092 von Willebrand factor type A domain VA249_RS16915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_RS16915 PF01872 RibD C-terminal domain VA249_RS16920 PF03466 LysR substrate binding domain VA249_RS16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS16925 PF04076 Bacterial OB fold (BOF) protein VA249_RS16940 PF03781 Sulfatase-modifying factor enzyme 1 VA249_RS16945 PF04055 Radical SAM superfamily VA249_RS16945 PF13186 Iron-sulfur cluster-binding domain VA249_RS16955 PF08774 VRR-NUC domain VA249_RS16955 PF18081 Fanconi anemia-associated nuclease SAP domain VA249_RS16970 PF03606 C4-dicarboxylate anaerobic carrier VA249_RS16985 PF00072 Response regulator receiver domain VA249_RS16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS16990 PF00155 Aminotransferase class I and II VA249_RS16995 PF01926 50S ribosome-binding GTPase VA249_RS17000 PF00881 Nitroreductase family VA249_RS17005 PF00072 Response regulator receiver domain VA249_RS17005 PF01584 CheW-like domain VA249_RS17010 PF07963 Prokaryotic N-terminal methylation motif VA249_RS17020 PF00892 EamA-like transporter family VA249_RS17025 PF01124 MAPEG family VA249_RS17035 PF01569 PAP2 superfamily VA249_RS17045 PF00892 EamA-like transporter family VA249_RS17055 PF00171 Aldehyde dehydrogenase family VA249_RS17065 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_RS17080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_RS17085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS17090 PF12320 Type 5 capsule protein repressor C-terminal domain VA249_RS17090 PF00149 Calcineurin-like phosphoesterase VA249_RS17095 PF13476 AAA domain VA249_RS17105 PF00704 Glycosyl hydrolases family 18 VA249_RS17125 PF08212 Lipocalin-like domain VA249_RS17135 PF02347 Glycine cleavage system P-protein VA249_RS17140 PF01597 Glycine cleavage H-protein VA249_RS17145 PF00464 Serine hydroxymethyltransferase VA249_RS17155 PF08669 Glycine cleavage T-protein C-terminal barrel domain VA249_RS17155 PF01571 Aminomethyltransferase folate-binding domain VA249_RS17165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS17175 PF00873 AcrB/AcrD/AcrF family VA249_RS17185 PF02378 Phosphotransferase system, EIIC VA249_RS17185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_RS17190 PF00294 pfkB family carbohydrate kinase VA249_RS17195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_RS17195 PF00381 PTS HPr component phosphorylation site VA249_RS17200 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_RS17200 PF00356 Bacterial regulatory proteins, lacI family VA249_RS17220 PF00924 Mechanosensitive ion channel VA249_RS17235 PF01914 MarC family integral membrane protein VA249_RS17240 PF03448 MgtE intracellular N domain VA249_RS17240 PF01769 Divalent cation transporter VA249_RS17240 PF00571 CBS domain VA249_RS17250 PF01699 Sodium/calcium exchanger protein VA249_RS17260 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS17265 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS17270 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS17275 PF00005 ABC transporter VA249_RS17280 PF00465 Iron-containing alcohol dehydrogenase VA249_RS17285 PF06719 AraC-type transcriptional regulator N-terminus VA249_RS17285 PF12833 Helix-turn-helix domain VA249_RS17290 PF00483 Nucleotidyl transferase VA249_RS17295 PF01268 Formate--tetrahydrofolate ligase VA249_RS17300 PF00294 pfkB family carbohydrate kinase VA249_RS17315 PF11849 Domain of unknown function (DUF3369) VA249_RS17320 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS17325 PF04336 Acyl carrier protein phosphodiesterase VA249_RS17330 PF00270 DEAD/DEAH box helicase VA249_RS17330 PF00271 Helicase conserved C-terminal domain VA249_RS17345 PF01292 Prokaryotic cytochrome b561 VA249_RS17350 PF04264 YceI-like domain VA249_RS17355 PF01226 Formate/nitrite transporter VA249_RS17360 PF03466 LysR substrate binding domain VA249_RS17360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS17365 PF06496 Protein of unknown function (DUF1097) VA249_RS17370 PF11398 Protein of unknown function (DUF2813) VA249_RS17375 PF02872 5'-nucleotidase, C-terminal domain VA249_RS17375 PF00149 Calcineurin-like phosphoesterase VA249_RS17380 PF03741 Integral membrane protein TerC family VA249_RS17400 PF12262 Bacterial virulence factor lipase N-terminal VA249_RS17405 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_RS17420 PF03061 Thioesterase superfamily VA249_RS17430 PF12793 Sugar transport-related sRNA regulator N-term VA249_RS17430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS17455 PF00684 DnaJ central domain VA249_RS17455 PF00226 DnaJ domain VA249_RS17455 PF01556 DnaJ C terminal domain VA249_RS17465 PF00563 EAL domain VA249_RS17465 PF03707 Bacterial signalling protein N terminal repeat VA249_RS17465 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS17465 PF13188 PAS domain VA249_RS17470 PF07055 Enoyl reductase FAD binding domain VA249_RS17470 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VA249_RS17470 PF12241 Trans-2-enoyl-CoA reductase catalytic region VA249_RS17475 PF13472 GDSL-like Lipase/Acylhydrolase family VA249_RS17480 PF00005 ABC transporter VA249_RS17495 PF02626 Carboxyltransferase domain, subdomain A and B VA249_RS17500 PF02682 Carboxyltransferase domain, subdomain C and D VA249_RS17505 PF03746 LamB/YcsF family VA249_RS17510 PF13426 PAS domain VA249_RS17510 PF08448 PAS fold VA249_RS17510 PF00563 EAL domain VA249_RS17510 PF08447 PAS fold VA249_RS17510 PF05231 MASE1 VA249_RS17510 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS17515 PF16363 GDP-mannose 4,6 dehydratase VA249_RS17520 PF04886 PT repeat VA249_RS17520 PF00593 TonB dependent receptor VA249_RS17520 PF07715 TonB-dependent Receptor Plug Domain VA249_RS17525 PF03466 LysR substrate binding domain VA249_RS17525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS17530 PF13380 CoA binding domain VA249_RS17530 PF00583 Acetyltransferase (GNAT) family VA249_RS17530 PF13607 Succinyl-CoA ligase like flavodoxin domain VA249_RS17540 PF01820 D-ala D-ala ligase N-terminus VA249_RS17540 PF07478 D-ala D-ala ligase C-terminus VA249_RS17550 PF01253 Translation initiation factor SUI1 VA249_RS17575 PF03701 Uncharacterised protein family (UPF0181) VA249_RS17590 PF00072 Response regulator receiver domain VA249_RS17590 PF00486 Transcriptional regulatory protein, C terminal VA249_RS17600 PF02233 NAD(P) transhydrogenase beta subunit VA249_RS17605 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VA249_RS17605 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VA249_RS17605 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VA249_RS17620 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS17635 PF00360 Phytochrome region VA249_RS17635 PF01590 GAF domain VA249_RS17635 PF00563 EAL domain VA249_RS17635 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS17645 PF00005 ABC transporter VA249_RS17645 PF03459 TOBE domain VA249_RS17650 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS17660 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VA249_RS17660 PF07685 CobB/CobQ-like glutamine amidotransferase domain VA249_RS17665 PF04076 Bacterial OB fold (BOF) protein VA249_RS17675 PF08443 RimK-like ATP-grasp domain VA249_RS17675 PF18030 RimK PreATP-grasp domain VA249_RS17680 PF00155 Aminotransferase class I and II VA249_RS17685 PF12833 Helix-turn-helix domain VA249_RS17690 PF01554 MatE VA249_RS17700 PF13597 Anaerobic ribonucleoside-triphosphate reductase VA249_RS17700 PF03477 ATP cone domain VA249_RS17715 PF04143 Sulphur transport VA249_RS17725 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS17725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_RS17740 PF01979 Amidohydrolase family VA249_RS17775 PF01594 AI-2E family transporter VA249_RS17785 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS17785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS17800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VA249_RS17800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VA249_RS17805 PF00085 Thioredoxin VA249_RS17810 PF07690 Major Facilitator Superfamily VA249_RS17815 PF11756 Nitrous oxide-stimulated promoter VA249_RS17820 PF13302 Acetyltransferase (GNAT) domain VA249_RS17840 PF10414 Sirohaem synthase dimerisation region VA249_RS17840 PF14824 Sirohaem biosynthesis protein central VA249_RS17840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_RS17845 PF01226 Formate/nitrite transporter VA249_RS17850 PF13806 Rieske-like [2Fe-2S] domain VA249_RS17855 PF18267 Rubredoxin NAD+ reductase C-terminal domain VA249_RS17855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA249_RS17855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA249_RS17855 PF04324 BFD-like [2Fe-2S] binding domain VA249_RS17855 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS17860 PF07694 5TMR of 5TMR-LYT VA249_RS17860 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS17910 PF01565 FAD binding domain VA249_RS17910 PF09330 D-lactate dehydrogenase, membrane binding VA249_RS17920 PF05762 VWA domain containing CoxE-like protein VA249_RS17925 PF07728 AAA domain (dynein-related subfamily) VA249_RS17925 PF17868 AAA lid domain VA249_RS17925 PF12592 Protein of unknown function (DUF3763) VA249_RS17935 PF01212 Beta-eliminating lyase VA249_RS17940 PF00034 Cytochrome c VA249_RS17945 PF03606 C4-dicarboxylate anaerobic carrier VA249_RS17955 PF07690 Major Facilitator Superfamily VA249_RS17975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS17975 PF03466 LysR substrate binding domain VA249_RS17995 PF00664 ABC transporter transmembrane region VA249_RS17995 PF00005 ABC transporter VA249_RS18030 PF00501 AMP-binding enzyme VA249_RS18030 PF13193 AMP-binding enzyme C-terminal domain VA249_RS18060 PF00873 AcrB/AcrD/AcrF family VA249_RS18065 PF13533 Biotin-lipoyl like VA249_RS18070 PF03616 Sodium/glutamate symporter VA249_RS18075 PF01594 AI-2E family transporter VA249_RS18115 PF18267 Rubredoxin NAD+ reductase C-terminal domain VA249_RS18115 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS18115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA249_RS18115 PF13806 Rieske-like [2Fe-2S] domain VA249_RS18115 PF04324 BFD-like [2Fe-2S] binding domain VA249_RS18115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA249_RS18120 PF00005 ABC transporter VA249_RS18125 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS18135 PF08376 Nitrate and nitrite sensing VA249_RS18135 PF03861 ANTAR domain VA249_RS18140 PF01738 Dienelactone hydrolase family VA249_RS18145 PF02885 Glycosyl transferase family, helical bundle domain VA249_RS18145 PF00591 Glycosyl transferase family, a/b domain VA249_RS18150 PF10414 Sirohaem synthase dimerisation region VA249_RS18150 PF14824 Sirohaem biosynthesis protein central VA249_RS18150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_RS18155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_RS18155 PF01568 Molydopterin dinucleotide binding domain VA249_RS18155 PF00384 Molybdopterin oxidoreductase VA249_RS18165 PF03222 Tryptophan/tyrosine permease family VA249_RS18175 PF00082 Subtilase family VA249_RS18175 PF01483 Proprotein convertase P-domain VA249_RS18185 PF00245 Alkaline phosphatase VA249_RS18190 PF18719 ArlS sensor domain VA249_RS18190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS18190 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS18195 PF00072 Response regulator receiver domain VA249_RS18195 PF00486 Transcriptional regulatory protein, C terminal VA249_RS18215 PF00012 Hsp70 protein VA249_RS18230 PF00676 Dehydrogenase E1 component VA249_RS18235 PF02779 Transketolase, pyrimidine binding domain VA249_RS18235 PF02780 Transketolase, C-terminal domain VA249_RS18240 PF00364 Biotin-requiring enzyme VA249_RS18240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA249_RS18240 PF02817 e3 binding domain VA249_RS18245 PF00766 Electron transfer flavoprotein FAD-binding domain VA249_RS18245 PF01012 Electron transfer flavoprotein domain VA249_RS18250 PF01012 Electron transfer flavoprotein domain VA249_RS18260 PF02424 ApbE family VA249_RS18265 PF03358 NADPH-dependent FMN reductase VA249_RS18265 PF04205 FMN-binding domain VA249_RS18265 PF00890 FAD binding domain VA249_RS18270 PF00043 Glutathione S-transferase, C-terminal domain VA249_RS18270 PF02798 Glutathione S-transferase, N-terminal domain VA249_RS18275 PF03466 LysR substrate binding domain VA249_RS18275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS18290 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS18295 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS18300 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_RS18305 PF00005 ABC transporter VA249_RS18325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_RS18325 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS18335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_RS18335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_RS18340 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS18345 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS18350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS18350 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS18350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS18355 PF00171 Aldehyde dehydrogenase family VA249_RS18360 PF02803 Thiolase, C-terminal domain VA249_RS18360 PF00108 Thiolase, N-terminal domain VA249_RS18365 PF00376 MerR family regulatory protein VA249_RS18365 PF09278 MerR, DNA binding VA249_RS18370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS18370 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS18370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS18375 PF01039 Carboxyl transferase domain VA249_RS18380 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS18385 PF00682 HMGL-like VA249_RS18395 PF00034 Cytochrome c VA249_RS18400 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA249_RS18410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA249_RS18410 PF00034 Cytochrome c VA249_RS18415 PF00871 Acetokinase family VA249_RS18420 PF03880 DbpA RNA binding domain VA249_RS18420 PF00270 DEAD/DEAH box helicase VA249_RS18420 PF00271 Helicase conserved C-terminal domain VA249_RS18425 PF00773 RNB domain VA249_RS18425 PF00575 S1 RNA binding domain VA249_RS18425 PF08206 Ribonuclease B OB domain VA249_RS18430 PF12833 Helix-turn-helix domain VA249_RS18440 PF12849 PBP superfamily domain VA249_RS18445 PF01575 MaoC like domain VA249_RS18470 PF03466 LysR substrate binding domain VA249_RS18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS18475 PF12146 Serine aminopeptidase, S33 VA249_RS18530 PF08448 PAS fold VA249_RS18530 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS18535 PF00860 Permease family VA249_RS18540 PF00005 ABC transporter VA249_RS18560 PF00271 Helicase conserved C-terminal domain VA249_RS18560 PF00270 DEAD/DEAH box helicase VA249_RS18565 PF07683 Cobalamin synthesis protein cobW C-terminal domain VA249_RS18565 PF02492 CobW/HypB/UreG, nucleotide-binding domain VA249_RS18575 PF01470 Pyroglutamyl peptidase VA249_RS18595 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) VA249_RS18610 PF12843 Putative quorum-sensing-regulated virulence factor VA249_RS18635 PF01329 Pterin 4 alpha carbinolamine dehydratase VA249_RS18640 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VA249_RS18645 PF13193 AMP-binding enzyme C-terminal domain VA249_RS18645 PF00501 AMP-binding enzyme VA249_RS18655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS18665 PF00892 EamA-like transporter family VA249_RS18680 PF00465 Iron-containing alcohol dehydrogenase VA249_RS18685 PF07995 Glucose / Sorbosone dehydrogenase VA249_RS18695 PF00210 Ferritin-like domain VA249_RS18700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS18700 PF00672 HAMP domain VA249_RS18710 PF12704 MacB-like periplasmic core domain VA249_RS18710 PF02687 FtsX-like permease family VA249_RS18710 PF00005 ABC transporter VA249_RS18715 PF02687 FtsX-like permease family VA249_RS18715 PF00005 ABC transporter VA249_RS18715 PF12704 MacB-like periplasmic core domain VA249_RS18730 PF00313 'Cold-shock' DNA-binding domain VA249_RS18760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA249_RS18760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_RS18785 PF00196 Bacterial regulatory proteins, luxR family VA249_RS18785 PF00072 Response regulator receiver domain VA249_RS18790 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS18795 PF00472 RF-1 domain VA249_RS18800 PF00672 HAMP domain VA249_RS18800 PF12729 Four helix bundle sensory module for signal transduction VA249_RS18800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS18805 PF00873 AcrB/AcrD/AcrF family VA249_RS18810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS18815 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_RS18820 PF01546 Peptidase family M20/M25/M40 VA249_RS18820 PF07687 Peptidase dimerisation domain VA249_RS18835 PF00072 Response regulator receiver domain VA249_RS18835 PF00196 Bacterial regulatory proteins, luxR family VA249_RS18840 PF00672 HAMP domain VA249_RS18840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS18840 PF07730 Histidine kinase VA249_RS18840 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VA249_RS18845 PF12838 4Fe-4S dicluster domain VA249_RS18845 PF13187 4Fe-4S dicluster domain VA249_RS18855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_RS18855 PF00384 Molybdopterin oxidoreductase VA249_RS18855 PF01568 Molydopterin dinucleotide binding domain VA249_RS18860 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VA249_RS18865 PF03264 NapC/NirT cytochrome c family, N-terminal region VA249_RS18875 PF00561 alpha/beta hydrolase fold VA249_RS18875 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VA249_RS18885 PF02803 Thiolase, C-terminal domain VA249_RS18885 PF00108 Thiolase, N-terminal domain VA249_RS18890 PF00106 short chain dehydrogenase VA249_RS18895 PF07549 SecD/SecF GG Motif VA249_RS18895 PF02355 Protein export membrane protein VA249_RS18900 PF07549 SecD/SecF GG Motif VA249_RS18900 PF02355 Protein export membrane protein VA249_RS18900 PF13721 SecD export protein N-terminal TM region VA249_RS18915 PF01037 Lrp/AsnC ligand binding domain VA249_RS18915 PF13404 AsnC-type helix-turn-helix domain VA249_RS18925 PF00072 Response regulator receiver domain VA249_RS18925 PF09308 LuxQ, periplasmic VA249_RS18925 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS18930 PF13407 Periplasmic binding protein domain VA249_RS18935 PF01541 GIY-YIG catalytic domain VA249_RS18940 PF04337 Protein of unknown function, DUF480 VA249_RS18950 PF04363 Protein of unknown function (DUF496) VA249_RS18955 PF01554 MatE VA249_RS18960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA249_RS18965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_RS18965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_RS19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19040 PF03466 LysR substrate binding domain VA249_RS19050 PF00873 AcrB/AcrD/AcrF family VA249_RS19065 PF00155 Aminotransferase class I and II VA249_RS19065 PF00392 Bacterial regulatory proteins, gntR family VA249_RS19075 PF12833 Helix-turn-helix domain VA249_RS19085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS19085 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS19090 PF03109 ABC1 family VA249_RS19095 PF00571 CBS domain VA249_RS19095 PF01769 Divalent cation transporter VA249_RS19095 PF03448 MgtE intracellular N domain VA249_RS19100 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VA249_RS19105 PF07969 Amidohydrolase family VA249_RS19120 PF01966 HD domain VA249_RS19130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VA249_RS19135 PF00255 Glutathione peroxidase VA249_RS19145 PF01323 DSBA-like thioredoxin domain VA249_RS19160 PF00106 short chain dehydrogenase VA249_RS19165 PF00072 Response regulator receiver domain VA249_RS19165 PF00486 Transcriptional regulatory protein, C terminal VA249_RS19170 PF00672 HAMP domain VA249_RS19170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS19170 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS19180 PF08019 Phosphoethanolamine transferase EptA/EptB VA249_RS19180 PF00884 Sulfatase VA249_RS19195 PF07690 Major Facilitator Superfamily VA249_RS19220 PF03466 LysR substrate binding domain VA249_RS19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19225 PF02525 Flavodoxin-like fold VA249_RS19230 PF00999 Sodium/hydrogen exchanger family VA249_RS19230 PF02254 TrkA-N domain VA249_RS19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19240 PF03466 LysR substrate binding domain VA249_RS19265 PF00128 Alpha amylase, catalytic domain VA249_RS19275 PF01584 CheW-like domain VA249_RS19275 PF00072 Response regulator receiver domain VA249_RS19285 PF01243 Pyridoxamine 5'-phosphate oxidase VA249_RS19290 PF06228 Haem utilisation ChuX/HutX VA249_RS19295 PF04055 Radical SAM superfamily VA249_RS19300 PF03544 Gram-negative bacterial TonB protein C-terminal VA249_RS19305 PF01618 MotA/TolQ/ExbB proton channel family VA249_RS19310 PF02472 Biopolymer transport protein ExbD/TolR VA249_RS19320 PF01032 FecCD transport family VA249_RS19325 PF00005 ABC transporter VA249_RS19360 PF07729 FCD domain VA249_RS19360 PF00392 Bacterial regulatory proteins, gntR family VA249_RS19370 PF01467 Cytidylyltransferase-like VA249_RS19375 PF02540 NAD synthase VA249_RS19380 PF03473 MOSC domain VA249_RS19380 PF03476 MOSC N-terminal beta barrel domain VA249_RS19380 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_RS19380 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_RS19380 PF03473 MOSC domain VA249_RS19380 PF03476 MOSC N-terminal beta barrel domain VA249_RS19385 PF01679 Proteolipid membrane potential modulator VA249_RS19390 PF01979 Amidohydrolase family VA249_RS19395 PF05661 Protein of unknown function (DUF808) VA249_RS19435 PF08220 DeoR-like helix-turn-helix domain VA249_RS19435 PF00455 DeoR C terminal sensor domain VA249_RS19440 PF01791 DeoC/LacD family aldolase VA249_RS19445 PF00294 pfkB family carbohydrate kinase VA249_RS19450 PF07690 Major Facilitator Superfamily VA249_RS19480 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS19485 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS19485 PF14785 Maltose transport system permease protein MalF P2 domain VA249_RS19490 PF01547 Bacterial extracellular solute-binding protein VA249_RS19500 PF08402 TOBE domain VA249_RS19500 PF00005 ABC transporter VA249_RS19505 PF04266 ASCH domain VA249_RS19510 PF00440 Bacterial regulatory proteins, tetR family VA249_RS19510 PF16925 Tetracyclin repressor-like, C-terminal domain VA249_RS19515 PF00107 Zinc-binding dehydrogenase VA249_RS19515 PF16884 N-terminal domain of oxidoreductase VA249_RS19525 PF00199 Catalase VA249_RS19525 PF06628 Catalase-related immune-responsive VA249_RS19530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_RS19530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_RS19540 PF03466 LysR substrate binding domain VA249_RS19540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_RS19560 PF12833 Helix-turn-helix domain VA249_RS19565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_RS19565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_RS19570 PF01238 Phosphomannose isomerase type I VA249_RS19580 PF02056 Family 4 glycosyl hydrolase VA249_RS19580 PF11975 Family 4 glycosyl hydrolase C-terminal domain VA249_RS19585 PF12833 Helix-turn-helix domain VA249_RS19595 PF01048 Phosphorylase superfamily VA249_RS19605 PF07670 Nucleoside recognition VA249_RS19605 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_RS19605 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_RS19610 PF02525 Flavodoxin-like fold VA249_RS19615 PF00860 Permease family VA249_RS19620 PF01979 Amidohydrolase family VA249_RS19630 PF01979 Amidohydrolase family VA249_RS19635 PF12838 4Fe-4S dicluster domain VA249_RS19635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VA249_RS19635 PF01568 Molydopterin dinucleotide binding domain VA249_RS19635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_RS19635 PF00384 Molybdopterin oxidoreductase VA249_RS19650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS19655 PF00873 AcrB/AcrD/AcrF family VA249_RS19680 PF00698 Acyl transferase domain VA249_RS19680 PF00109 Beta-ketoacyl synthase, N-terminal domain VA249_RS19680 PF08240 Alcohol dehydrogenase GroES-like domain VA249_RS19680 PF02801 Beta-ketoacyl synthase, C-terminal domain VA249_RS19680 PF08659 KR domain VA249_RS19680 PF14765 Polyketide synthase dehydratase VA249_RS19680 PF00550 Phosphopantetheine attachment site VA249_RS19680 PF16197 Ketoacyl-synthetase C-terminal extension VA249_RS19695 PF00293 NUDIX domain VA249_RS19700 PF00583 Acetyltransferase (GNAT) family VA249_RS19705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA249_RS19705 PF00326 Prolyl oligopeptidase family VA249_RS19715 PF00582 Universal stress protein family VA249_RS19720 PF02357 Transcription termination factor nusG VA249_RS19735 PF01734 Patatin-like phospholipase VA249_RS19740 PF02678 Pirin VA249_RS19740 PF05726 Pirin C-terminal cupin domain VA249_RS19745 PF00313 'Cold-shock' DNA-binding domain VA249_RS19755 PF00462 Glutaredoxin VA249_RS19755 PF08534 Redoxin VA249_RS19765 PF00768 D-alanyl-D-alanine carboxypeptidase VA249_RS19765 PF07943 Penicillin-binding protein 5, C-terminal domain VA249_RS19770 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_RS19775 PF02525 Flavodoxin-like fold VA249_RS19780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19780 PF03466 LysR substrate binding domain VA249_RS19785 PF02798 Glutathione S-transferase, N-terminal domain VA249_RS19795 PF01872 RibD C-terminal domain VA249_RS19800 PF01928 CYTH domain VA249_RS19820 PF00106 short chain dehydrogenase VA249_RS19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19830 PF03466 LysR substrate binding domain VA249_RS19835 PF01497 Periplasmic binding protein VA249_RS19835 PF12833 Helix-turn-helix domain VA249_RS19840 PF00155 Aminotransferase class I and II VA249_RS19870 PF00271 Helicase conserved C-terminal domain VA249_RS19870 PF00270 DEAD/DEAH box helicase VA249_RS19875 PF01965 DJ-1/PfpI family VA249_RS19890 PF00582 Universal stress protein family VA249_RS19895 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VA249_RS19910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS19910 PF03466 LysR substrate binding domain VA249_RS19915 PF00709 Adenylosuccinate synthetase VA249_RS19935 PF08240 Alcohol dehydrogenase GroES-like domain VA249_RS19935 PF00107 Zinc-binding dehydrogenase VA249_RS19940 PF02378 Phosphotransferase system, EIIC VA249_RS19940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_RS19945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_RS19950 PF00011 Hsp20/alpha crystallin family VA249_RS19955 PF00012 Hsp70 protein VA249_RS19960 PF00226 DnaJ domain VA249_RS19960 PF01556 DnaJ C terminal domain VA249_RS19960 PF00684 DnaJ central domain VA249_RS19965 PF03618 Kinase/pyrophosphorylase VA249_RS19970 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VA249_RS19970 PF02896 PEP-utilising enzyme, TIM barrel domain VA249_RS19970 PF00391 PEP-utilising enzyme, mobile domain VA249_RS19980 PF04976 DMSO reductase anchor subunit (DmsC) VA249_RS19985 PF12800 4Fe-4S binding domain VA249_RS19985 PF13247 4Fe-4S dicluster domain VA249_RS19990 PF00384 Molybdopterin oxidoreductase VA249_RS19990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_RS19990 PF01568 Molydopterin dinucleotide binding domain VA249_RS19995 PF02613 Nitrate reductase delta subunit VA249_RS20005 PF00196 Bacterial regulatory proteins, luxR family VA249_RS20010 PF00579 tRNA synthetases class I (W and Y) VA249_RS20020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20020 PF03466 LysR substrate binding domain VA249_RS20025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS20030 PF00873 AcrB/AcrD/AcrF family VA249_RS20035 PF02321 Outer membrane efflux protein VA249_RS20040 PF03616 Sodium/glutamate symporter VA249_RS20050 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_RS20050 PF00703 Glycosyl hydrolases family 2 VA249_RS20050 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VA249_RS20050 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_RS20055 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_RS20075 PF00873 AcrB/AcrD/AcrF family VA249_RS20085 PF00873 AcrB/AcrD/AcrF family VA249_RS20090 PF13533 Biotin-lipoyl like VA249_RS20095 PF13091 PLD-like domain VA249_RS20125 PF00486 Transcriptional regulatory protein, C terminal VA249_RS20135 PF18500 CadC C-terminal domain 1 VA249_RS20135 PF00486 Transcriptional regulatory protein, C terminal VA249_RS20145 PF09278 MerR, DNA binding VA249_RS20145 PF00376 MerR family regulatory protein VA249_RS20150 PF14492 Elongation Factor G, domain II VA249_RS20150 PF03764 Elongation factor G, domain IV VA249_RS20150 PF00009 Elongation factor Tu GTP binding domain VA249_RS20150 PF03144 Elongation factor Tu domain 2 VA249_RS20150 PF00679 Elongation factor G C-terminus VA249_RS20170 PF02001 Protein of unknown function DUF134 VA249_RS20180 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS20185 PF00005 ABC transporter VA249_RS20185 PF00571 CBS domain VA249_RS20190 PF04170 NlpE N-terminal domain VA249_RS20190 PF17185 NlpE C-terminal OB domain VA249_RS20195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20195 PF03466 LysR substrate binding domain VA249_RS20215 PF06942 GlpM protein VA249_RS20225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VA249_RS20225 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VA249_RS20235 PF00857 Isochorismatase family VA249_RS20245 PF00080 Copper/zinc superoxide dismutase (SODC) VA249_RS20260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS20265 PF01625 Peptide methionine sulfoxide reductase VA249_RS20265 PF01641 SelR domain VA249_RS20285 PF00581 Rhodanese-like domain VA249_RS20305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20305 PF03466 LysR substrate binding domain VA249_RS20310 PF13409 Glutathione S-transferase, N-terminal domain VA249_RS20315 PF03358 NADPH-dependent FMN reductase VA249_RS20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20320 PF03466 LysR substrate binding domain VA249_RS20325 PF09905 DNA-binding protein VF530 VA249_RS20330 PF12848 ABC transporter VA249_RS20330 PF00005 ABC transporter VA249_RS20345 PF07690 Major Facilitator Superfamily VA249_RS20350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20350 PF03466 LysR substrate binding domain VA249_RS20370 PF13533 Biotin-lipoyl like VA249_RS20380 PF01594 AI-2E family transporter VA249_RS20385 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA249_RS20395 PF00970 Oxidoreductase FAD-binding domain VA249_RS20395 PF00175 Oxidoreductase NAD-binding domain VA249_RS20405 PF09905 DNA-binding protein VF530 VA249_RS20410 PF03466 LysR substrate binding domain VA249_RS20410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20420 PF03466 LysR substrate binding domain VA249_RS20430 PF12706 Beta-lactamase superfamily domain VA249_RS20445 PF07943 Penicillin-binding protein 5, C-terminal domain VA249_RS20445 PF00768 D-alanyl-D-alanine carboxypeptidase VA249_RS20450 PF00561 alpha/beta hydrolase fold VA249_RS20460 PF02469 Fasciclin domain VA249_RS20470 PF18416 N-acetylglucosamine binding protein domain 2 VA249_RS20470 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VA249_RS20485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS20485 PF00672 HAMP domain VA249_RS20485 PF17200 Single Cache domain 2 VA249_RS20490 PF01734 Patatin-like phospholipase VA249_RS20495 PF00465 Iron-containing alcohol dehydrogenase VA249_RS20500 PF00596 Class II Aldolase and Adducin N-terminal domain VA249_RS20505 PF05025 RbsD / FucU transport protein family VA249_RS20510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_RS20510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_RS20515 PF02952 L-fucose isomerase, C-terminal domain VA249_RS20515 PF07881 L-fucose isomerase, first N-terminal domain VA249_RS20515 PF07882 L-fucose isomerase, second N-terminal domain VA249_RS20520 PF07690 Major Facilitator Superfamily VA249_RS20525 PF00455 DeoR C terminal sensor domain VA249_RS20525 PF08220 DeoR-like helix-turn-helix domain VA249_RS20530 PF01914 MarC family integral membrane protein VA249_RS20535 PF05958 tRNA (Uracil-5-)-methyltransferase VA249_RS20540 PF00881 Nitroreductase family VA249_RS20565 PF00375 Sodium:dicarboxylate symporter family VA249_RS20570 PF06803 Protein of unknown function (DUF1232) VA249_RS20575 PF01546 Peptidase family M20/M25/M40 VA249_RS20575 PF07687 Peptidase dimerisation domain VA249_RS20580 PF07670 Nucleoside recognition VA249_RS20585 PF07670 Nucleoside recognition VA249_RS20590 PF00128 Alpha amylase, catalytic domain VA249_RS20595 PF00912 Transglycosylase VA249_RS20600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_RS20600 PF00128 Alpha amylase, catalytic domain VA249_RS20600 PF02806 Alpha amylase, C-terminal all-beta domain VA249_RS20605 PF02446 4-alpha-glucanotransferase VA249_RS20610 PF00343 Carbohydrate phosphorylase VA249_RS20615 PF17874 MalT-like TPR region VA249_RS20615 PF00196 Bacterial regulatory proteins, luxR family VA249_RS20630 PF02630 SCO1/SenC VA249_RS20640 PF02378 Phosphotransferase system, EIIC VA249_RS20640 PF00367 phosphotransferase system, EIIB VA249_RS20645 PF03193 RsgA GTPase VA249_RS20650 PF00375 Sodium:dicarboxylate symporter family VA249_RS20655 PF08543 Phosphomethylpyrimidine kinase VA249_RS20665 PF13520 Amino acid permease VA249_RS20670 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VA249_RS20670 PF01276 Orn/Lys/Arg decarboxylase, major domain VA249_RS20670 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VA249_RS20685 PF03714 Bacterial pullanase-associated domain VA249_RS20685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_RS20685 PF11852 Domain of unknown function (DUF3372) VA249_RS20685 PF18494 Pullulanase Ins domain VA249_RS20685 PF17967 Pullulanase N2 domain VA249_RS20695 PF02264 LamB porin VA249_RS20700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_RS20700 PF00128 Alpha amylase, catalytic domain VA249_RS20705 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS20705 PF17158 Membrane-associated sensor, integral membrane domain VA249_RS20710 PF02796 Helix-turn-helix domain of resolvase VA249_RS20710 PF00239 Resolvase, N terminal domain VA249_RS20715 PF07690 Major Facilitator Superfamily VA249_RS20720 PF00892 EamA-like transporter family VA249_RS20725 PF07715 TonB-dependent Receptor Plug Domain VA249_RS20725 PF00593 TonB dependent receptor VA249_RS20730 PF03466 LysR substrate binding domain VA249_RS20730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20735 PF01497 Periplasmic binding protein VA249_RS20740 PF01032 FecCD transport family VA249_RS20745 PF01032 FecCD transport family VA249_RS20750 PF00005 ABC transporter VA249_RS20755 PF00440 Bacterial regulatory proteins, tetR family VA249_RS20755 PF08360 QacR-like protein, C-terminal region VA249_RS20765 PF13533 Biotin-lipoyl like VA249_RS20780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20780 PF03466 LysR substrate binding domain VA249_RS20785 PF00857 Isochorismatase family VA249_RS20795 PF02629 CoA binding domain VA249_RS20795 PF00549 CoA-ligase VA249_RS20800 PF06545 Protein of unknown function (DUF1116) VA249_RS20805 PF00696 Amino acid kinase family VA249_RS20815 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VA249_RS20825 PF16325 Peptidase family U32 C-terminal domain VA249_RS20825 PF01136 Peptidase family U32 VA249_RS20840 PF00005 ABC transporter VA249_RS20845 PF02687 FtsX-like permease family VA249_RS20845 PF12704 MacB-like periplasmic core domain VA249_RS20870 PF00578 AhpC/TSA family VA249_RS20870 PF10417 C-terminal domain of 1-Cys peroxiredoxin VA249_RS20875 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS20875 PF13192 Thioredoxin domain VA249_RS20880 PF00313 'Cold-shock' DNA-binding domain VA249_RS20885 PF00202 Aminotransferase class-III VA249_RS20890 PF01037 Lrp/AsnC ligand binding domain VA249_RS20895 PF01321 Creatinase/Prolidase N-terminal domain VA249_RS20895 PF00557 Metallopeptidase family M24 VA249_RS20915 PF12833 Helix-turn-helix domain VA249_RS20920 PF06441 Epoxide hydrolase N terminus VA249_RS20950 PF07282 Putative transposase DNA-binding domain VA249_RS20950 PF12323 Helix-turn-helix domain VA249_RS20950 PF01385 Probable transposase VA249_RS20960 PF00271 Helicase conserved C-terminal domain VA249_RS20960 PF00270 DEAD/DEAH box helicase VA249_RS20970 PF07859 alpha/beta hydrolase fold VA249_RS20980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS20980 PF03466 LysR substrate binding domain VA249_RS20985 PF03786 D-mannonate dehydratase (UxuA) VA249_RS20990 PF01232 Mannitol dehydrogenase Rossmann domain VA249_RS20990 PF08125 Mannitol dehydrogenase C-terminal domain VA249_RS20995 PF02614 Glucuronate isomerase VA249_RS21000 PF00294 pfkB family carbohydrate kinase VA249_RS21005 PF01081 KDPG and KHG aldolase VA249_RS21025 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_RS21025 PF00703 Glycosyl hydrolases family 2 VA249_RS21025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_RS21030 PF10688 Bacterial inner membrane protein VA249_RS21035 PF07729 FCD domain VA249_RS21035 PF00392 Bacterial regulatory proteins, gntR family VA249_RS21040 PF03573 outer membrane porin, OprD family VA249_RS21055 PF00664 ABC transporter transmembrane region VA249_RS21055 PF00005 ABC transporter VA249_RS21065 PF01037 Lrp/AsnC ligand binding domain VA249_RS21095 PF00474 Sodium:solute symporter family VA249_RS21105 PF00171 Aldehyde dehydrogenase family VA249_RS21105 PF01619 Proline dehydrogenase VA249_RS21105 PF14850 DNA-binding domain of Proline dehydrogenase VA249_RS21105 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VA249_RS21110 PF12833 Helix-turn-helix domain VA249_RS21120 PF01243 Pyridoxamine 5'-phosphate oxidase VA249_RS21120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VA249_RS21125 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS21125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS21125 PF02743 Cache domain VA249_RS21130 PF02954 Bacterial regulatory protein, Fis family VA249_RS21130 PF00072 Response regulator receiver domain VA249_RS21130 PF00158 Sigma-54 interaction domain VA249_RS21135 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS21150 PF00664 ABC transporter transmembrane region VA249_RS21150 PF00005 ABC transporter VA249_RS21150 PF03412 Peptidase C39 family VA249_RS21160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_RS21165 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_RS21175 PF13718 GNAT acetyltransferase 2 VA249_RS21175 PF05127 Helicase VA249_RS21180 PF02195 ParB-like nuclease domain VA249_RS21180 PF08775 ParB family VA249_RS21185 PF18607 ParA helix turn helix domain VA249_RS21185 PF13614 AAA domain VA249_RS21210 PF01709 Transcriptional regulator VA249_RS21215 PF01098 Cell cycle protein VA249_RS21225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS21230 PF03466 LysR substrate binding domain VA249_RS21230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS21240 PF00005 ABC transporter VA249_RS21260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS21260 PF06580 Histidine kinase VA249_RS21260 PF13492 GAF domain VA249_RS21260 PF07694 5TMR of 5TMR-LYT VA249_RS21265 PF04397 LytTr DNA-binding domain VA249_RS21265 PF00072 Response regulator receiver domain VA249_RS21275 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA249_RS21285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS21285 PF03466 LysR substrate binding domain VA249_RS21330 PF08534 Redoxin VA249_RS21335 PF02630 SCO1/SenC VA249_RS21365 PF03466 LysR substrate binding domain VA249_RS21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS21375 PF03616 Sodium/glutamate symporter VA249_RS21385 PF00005 ABC transporter VA249_RS21390 PF03616 Sodium/glutamate symporter VA249_RS21400 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VA249_RS21415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS21415 PF03466 LysR substrate binding domain VA249_RS21425 PF00730 HhH-GPD superfamily base excision DNA repair protein VA249_RS21425 PF06029 AlkA N-terminal domain VA249_RS21430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VA249_RS21430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VA249_RS21440 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VA249_RS21445 PF03600 Citrate transporter VA249_RS21450 PF01168 Alanine racemase, N-terminal domain VA249_RS21450 PF00842 Alanine racemase, C-terminal domain VA249_RS21450 PF01757 Acyltransferase family VA249_RS21470 PF06865 Pyrimidine/purine nucleoside phosphorylase VA249_RS21485 PF00356 Bacterial regulatory proteins, lacI family VA249_RS21490 PF17912 MalK OB fold domain VA249_RS21490 PF00005 ABC transporter VA249_RS21495 PF00356 Bacterial regulatory proteins, lacI family VA249_RS21500 PF07745 Glycosyl hydrolase family 53 VA249_RS21520 PF13610 DDE domain VA249_RS21525 PF00302 Chloramphenicol acetyltransferase VA249_RS21530 PF01609 Transposase DDE domain VA249_RS21530 PF05598 Transposase domain (DUF772) VA249_RS21540 PF00809 Pterin binding enzyme VA249_RS21545 PF07690 Major Facilitator Superfamily VA249_RS21625 PF14492 Elongation Factor G, domain II VA249_RS21625 PF03764 Elongation factor G, domain IV VA249_RS21625 PF00009 Elongation factor Tu GTP binding domain VA249_RS21625 PF00679 Elongation factor G C-terminus VA249_RS21640 PF12833 Helix-turn-helix domain VA249_RS21645 PF00440 Bacterial regulatory proteins, tetR family VA249_RS21650 PF07690 Major Facilitator Superfamily VA249_RS21655 PF02909 Tetracyclin repressor-like, C-terminal domain VA249_RS21655 PF00440 Bacterial regulatory proteins, tetR family VA249_RS21765 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS21800 PF00005 ABC transporter VA249_RS21920 PF13614 AAA domain VA249_RS22055 PF05922 Peptidase inhibitor I9 VA249_RS22055 PF00082 Subtilase family VA249_RS22145 PF01068 ATP dependent DNA ligase domain VA249_RS22145 PF14743 DNA ligase OB-like domain VA249_RS22205 PF00580 UvrD/REP helicase N-terminal domain VA249_RS22205 PF13361 UvrD-like helicase C-terminal domain VA249_RS22390 PF17149 Periplasmic sensor domain found in signal transduction proteins VA249_RS22390 PF00672 HAMP domain VA249_RS22390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS22390 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS22390 PF01627 Hpt domain VA249_RS22390 PF00072 Response regulator receiver domain VA249_RS22420 PF00270 DEAD/DEAH box helicase VA249_RS22420 PF17764 3′ DNA-binding domain (3′BD) VA249_RS22420 PF18074 Primosomal protein N C-terminal domain VA249_RS22420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VA249_RS22420 PF00271 Helicase conserved C-terminal domain VA249_RS22525 PF13361 UvrD-like helicase C-terminal domain VA249_RS22525 PF00580 UvrD/REP helicase N-terminal domain VA249_RS22630 PF01145 SPFH domain / Band 7 family VA249_RS22630 PF16200 C-terminal region of band_7 VA249_RS22660 PF00929 Exonuclease VA249_RS22705 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VA249_RS22730 PF01381 Helix-turn-helix VA249_RS22740 PF00578 AhpC/TSA family VA249_RS22815 PF11799 impB/mucB/samB family C-terminal domain VA249_RS22815 PF00817 impB/mucB/samB family VA249_RS22835 PF10544 T5orf172 domain VA249_RS22940 PF01555 DNA methylase VA249_RS22965 PF02311 AraC-like ligand binding domain VA249_RS22965 PF12833 Helix-turn-helix domain VA249_RS22975 PF02610 L-arabinose isomerase VA249_RS22975 PF11762 L-arabinose isomerase C-terminal domain VA249_RS22980 PF00596 Class II Aldolase and Adducin N-terminal domain VA249_RS22985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_RS22985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_RS22990 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_RS22995 PF00005 ABC transporter VA249_RS23015 PF00672 HAMP domain VA249_RS23015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS23015 PF12729 Four helix bundle sensory module for signal transduction VA249_RS23020 PF10509 Galactokinase galactose-binding signature VA249_RS23020 PF08544 GHMP kinases C terminal VA249_RS23020 PF00288 GHMP kinases N terminal domain VA249_RS23025 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA249_RS23025 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA249_RS23030 PF16363 GDP-mannose 4,6 dehydratase VA249_RS23035 PF00672 HAMP domain VA249_RS23035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_RS23035 PF12729 Four helix bundle sensory module for signal transduction VA249_RS23045 PF13358 DDE superfamily endonuclease VA249_RS23050 PF02264 LamB porin VA249_RS23055 PF02449 Beta-galactosidase VA249_RS23055 PF08533 Beta-galactosidase C-terminal domain VA249_RS23055 PF08532 Beta-galactosidase trimerisation domain VA249_RS23060 PF07745 Glycosyl hydrolase family 53 VA249_RS23065 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS23070 PF00528 Binding-protein-dependent transport system inner membrane component VA249_RS23075 PF13416 Bacterial extracellular solute-binding protein VA249_RS23085 PF00005 ABC transporter VA249_RS23095 PF00266 Aminotransferase class-V VA249_RS23100 PF00202 Aminotransferase class-III VA249_RS23105 PF13419 Haloacid dehalogenase-like hydrolase VA249_RS23115 PF07859 alpha/beta hydrolase fold VA249_RS23125 PF01638 HxlR-like helix-turn-helix VA249_RS23135 PF01177 Asp/Glu/Hydantoin racemase VA249_RS23140 PF01569 PAP2 superfamily VA249_RS23145 PF13382 Adenine deaminase C-terminal domain VA249_RS23145 PF01979 Amidohydrolase family VA249_RS23150 PF07883 Cupin domain VA249_RS23150 PF12833 Helix-turn-helix domain VA249_RS23185 PF01575 MaoC like domain VA249_RS23195 PF00501 AMP-binding enzyme VA249_RS23195 PF13193 AMP-binding enzyme C-terminal domain VA249_RS23200 PF00561 alpha/beta hydrolase fold VA249_RS23205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_RS23205 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_RS23210 PF00171 Aldehyde dehydrogenase family VA249_RS23235 PF07044 Protein of unknown function (DUF1329) VA249_RS23240 PF01613 Flavin reductase like domain VA249_RS23245 PF01557 Fumarylacetoacetate (FAA) hydrolase family VA249_RS23250 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation VA249_RS23250 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_RS23255 PF07836 DmpG-like communication domain VA249_RS23255 PF00682 HMGL-like VA249_RS23265 PF08775 ParB family VA249_RS23265 PF02195 ParB-like nuclease domain VA249_RS23270 PF13614 AAA domain VA249_RS23280 PF07690 Major Facilitator Superfamily VA249_RS23285 PF16123 Hydroxyacylglutathione hydrolase C-terminus VA249_RS23285 PF00753 Metallo-beta-lactamase superfamily VA249_RS23290 PF00501 AMP-binding enzyme VA249_RS23290 PF13193 AMP-binding enzyme C-terminal domain VA249_RS23295 PF00890 FAD binding domain VA249_RS23300 PF13193 AMP-binding enzyme C-terminal domain VA249_RS23300 PF00501 AMP-binding enzyme VA249_RS23310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_RS23330 PF18642 Immunomodulating metalloprotease helical domain VA249_RS23330 PF18650 Immunomodulating metalloprotease N-terminal domain VA249_RS23330 PF13402 Peptidase M60, enhancin and enhancin-like VA249_RS23340 PF01575 MaoC like domain VA249_RS23345 PF02803 Thiolase, C-terminal domain VA249_RS23345 PF00108 Thiolase, N-terminal domain VA249_RS23350 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS23360 PF17158 Membrane-associated sensor, integral membrane domain VA249_RS23360 PF00990 Diguanylate cyclase, GGDEF domain VA249_RS23385 PF14667 Polysaccharide biosynthesis C-terminal domain VA249_RS23390 PF01451 Low molecular weight phosphotyrosine protein phosphatase VA249_RS23405 PF00535 Glycosyl transferase family 2 VA249_RS23415 PF00535 Glycosyl transferase family 2 VA249_RS23430 PF00512 His Kinase A (phospho-acceptor) domain VA249_RS23430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_RS23435 PF00072 Response regulator receiver domain VA249_RS23435 PF00158 Sigma-54 interaction domain VA249_RS23435 PF02954 Bacterial regulatory protein, Fis family VA249_RS23445 PF02899 Phage integrase, N-terminal SAM-like domain VA249_RS23445 PF00589 Phage integrase family VA249_RS23455 PF13439 Glycosyltransferase Family 4 VA249_RS23455 PF00534 Glycosyl transferases group 1 VA249_RS23460 PF08544 GHMP kinases C terminal VA249_RS23460 PF00288 GHMP kinases N terminal domain VA249_RS23465 PF13580 SIS domain VA249_RS23485 PF01040 UbiA prenyltransferase family VA249_RS23515 PF13614 AAA domain VA249_RS23515 PF13807 G-rich domain on putative tyrosine kinase VA249_RS23515 PF02706 Chain length determinant protein VA249_RS23530 PF02397 Bacterial sugar transferase VA249_RS23535 PF01522 Polysaccharide deacetylase VA249_RS23555 PF00733 Asparagine synthase VA249_RS23555 PF13537 Glutamine amidotransferase domain VA249_RS23560 PF00534 Glycosyl transferases group 1 VA249_RS23560 PF13439 Glycosyltransferase Family 4 VA249_RS23565 PF00534 Glycosyl transferases group 1 VA249_RS23565 PF13439 Glycosyltransferase Family 4 VA249_RS23570 PF09318 Glycosyl transferase 1 domain A VA249_RS23570 PF00534 Glycosyl transferases group 1 VA249_RS23585 PF02811 PHP domain VA249_RS23585 PF11490 DNA polymerase III polC-type N-terminus II VA249_RS23585 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_RS23585 PF00929 Exonuclease VA249_RS23585 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_RS23585 PF14579 Helix-hairpin-helix motif VA249_RS23595 PF00483 Nucleotidyl transferase VA249_RS23600 PF07722 Peptidase C26 VA249_RS23605 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VA249_RS23605 PF00391 PEP-utilising enzyme, mobile domain VA249_RS23610 PF01507 Phosphoadenosine phosphosulfate reductase family VA249_RS23615 PF00009 Elongation factor Tu GTP binding domain VA249_RS23620 PF02080 TrkA-C domain VA249_RS23620 PF03600 Citrate transporter VA249_RS23630 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS23630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS23630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS23635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS23635 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS23635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS23665 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS23675 PF00766 Electron transfer flavoprotein FAD-binding domain VA249_RS23675 PF01012 Electron transfer flavoprotein domain VA249_RS23680 PF01012 Electron transfer flavoprotein domain VA249_RS23700 PF12833 Helix-turn-helix domain VA249_RS23700 PF02311 AraC-like ligand binding domain VA249_RS23705 PF00175 Oxidoreductase NAD-binding domain VA249_RS23705 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_RS23705 PF00970 Oxidoreductase FAD-binding domain VA249_RS23710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS23710 PF08028 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS23735 PF07549 SecD/SecF GG Motif VA249_RS23735 PF02355 Protein export membrane protein VA249_RS23735 PF13721 SecD export protein N-terminal TM region VA249_RS23740 PF07549 SecD/SecF GG Motif VA249_RS23740 PF02355 Protein export membrane protein VA249_RS23745 PF01699 Sodium/calcium exchanger protein VA249_RS23755 PF00571 CBS domain VA249_RS23755 PF03448 MgtE intracellular N domain VA249_RS23755 PF01769 Divalent cation transporter VA249_RS23760 PF01914 MarC family integral membrane protein VA249_RS23765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS23765 PF03466 LysR substrate binding domain VA249_RS23770 PF00924 Mechanosensitive ion channel VA249_RS23785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_RS23785 PF00529 HlyD membrane-fusion protein of T1SS VA249_RS23790 PF01594 AI-2E family transporter VA249_RS23795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VA249_RS23795 PF12833 Helix-turn-helix domain VA249_RS23800 PF02810 SEC-C motif VA249_RS23800 PF01043 SecA preprotein cross-linking domain VA249_RS23800 PF07516 SecA Wing and Scaffold domain VA249_RS23800 PF07517 SecA DEAD-like domain VA249_RS23805 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VA249_RS23810 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VA249_RS23815 PF01425 Amidase VA249_RS23820 PF00106 short chain dehydrogenase VA249_RS23825 PF02803 Thiolase, C-terminal domain VA249_RS23825 PF00108 Thiolase, N-terminal domain VA249_RS23830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS23830 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS23830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS23835 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_RS23835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_RS23835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_RS23840 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS23845 PF03060 Nitronate monooxygenase VA249_RS23850 PF00378 Enoyl-CoA hydratase/isomerase VA249_RS23855 PF01144 Coenzyme A transferase VA249_RS23860 PF01144 Coenzyme A transferase VA249_RS23865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_RS23900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_RS23900 PF03466 LysR substrate binding domain VA249_RS23905 PF13091 PLD-like domain VA249_RS23915 PF00135 Carboxylesterase family VA249_RS23930 PF03458 UPF0126 domain VA249_RS23945 PF01103 Surface antigen VA249_RS23945 PF07244 Surface antigen variable number repeat VA249_RS23945 PF17243 POTRA domain TamA domain 1 VA249_RS23950 PF07969 Amidohydrolase family VA249_RS23960 PF01548 Transposase VA249_RS23960 PF02371 Transposase IS116/IS110/IS902 family VA249_RS24000 PF00392 Bacterial regulatory proteins, gntR family VA249_RS24000 PF07702 UTRA domain