AL539_RS00010	PF00563	EAL domain
AL539_RS00015	PF09673	AL539_RS00015
AL539_RS00020	PF10502	Signal peptidase, peptidase S26
AL539_RS00035	PF01609	Transposase DDE domain
AL539_RS00035	PF13340	AL539_RS00035
AL539_RS00045	PF10411	Disulfide bond isomerase protein N-terminus
AL539_RS00045	PF13098	Thioredoxin-like domain
AL539_RS00050	PF13750	AL539_RS00050
AL539_RS00050	PF13752	AL539_RS00050
AL539_RS00055	PF04956	AL539_RS00055
AL539_RS00060	PF04956	AL539_RS00060
AL539_RS00065	PF09676	AL539_RS00065
AL539_RS00070	PF03743	Bacterial conjugation TrbI-like protein
AL539_RS00075	PF06586	AL539_RS00075
AL539_RS00080	PF05309	AL539_RS00080
AL539_RS00085	PF07178	AL539_RS00085
AL539_RS00095	PF14348	AL539_RS00095
AL539_RS00105	PF12696	TraM recognition site of TraD and TraG
AL539_RS00105	PF12846	AAA-like domain
AL539_RS00110	PF07514	Putative helicase
AL539_RS00130	PF01131	DNA topoisomerase
AL539_RS00130	PF01396	AL539_RS00130
AL539_RS00130	PF01751	Toprim domain
AL539_RS00140	PF13737	AL539_RS00140
AL539_RS00210	PF02652	AL539_RS00210
AL539_RS00215	PF02754	AL539_RS00215
AL539_RS00220	PF02589	Uncharacterised ACR, YkgG family COG1556
AL539_RS00220	PF11870	AL539_RS00220
AL539_RS00220	PF13183	4Fe-4S dicluster domain
AL539_RS00225	PF02589	Uncharacterised ACR, YkgG family COG1556
AL539_RS00230	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS00230	PF03466	LysR substrate binding domain
AL539_RS00235	PF08447	PAS fold
AL539_RS00245	PF00665	Integrase core domain
AL539_RS00245	PF13936	Helix-turn-helix domain
AL539_RS00290	PF09904	Winged helix-turn helix
AL539_RS00295	PF02195	ParB-like nuclease domain
AL539_RS00295	PF08535	KorB domain
AL539_RS00300	PF13614	AAA domain
AL539_RS00305	PF01863	Protein of unknown function DUF45
AL539_RS00310	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_RS00310	PF04851	Type III restriction enzyme, res subunit
AL539_RS00320	PF01420	Type I restriction modification DNA specificity domain
AL539_RS00325	PF02384	N-6 DNA Methylase
AL539_RS00325	PF12161	HsdM N-terminal domain
AL539_RS00330	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL539_RS00340	PF00589	Phage integrase family
AL539_RS00350	PF08238	Sel1 repeat
AL539_RS00355	PF01936	NYN domain
AL539_RS00355	PF12872	OST-HTH/LOTUS domain
AL539_RS00425	PF03527	AL539_RS00425
AL539_RS00435	PF03527	AL539_RS00435
AL539_RS00435	PF05593	AL539_RS00435
AL539_RS00440	PF13481	AAA domain
AL539_RS00450	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AL539_RS00455	PF13358	DDE superfamily endonuclease
AL539_RS00455	PF13565	AL539_RS00455
AL539_RS00495	PF00565	Staphylococcal nuclease homologue
AL539_RS00510	PF13462	Thioredoxin
AL539_RS00515	PF01343	Peptidase family S49
AL539_RS00585	PF05280	Flagellar transcriptional activator (FlhC)
AL539_RS00595	PF01464	Transglycosylase SLT domain
AL539_RS00600	PF13693	Winged helix-turn-helix DNA-binding
AL539_RS00610	PF07916	AL539_RS00610
AL539_RS00615	PF06122	AL539_RS00615
AL539_RS00620	PF13728	F plasmid transfer operon protein
AL539_RS00625	PF00580	UvrD/REP helicase N-terminal domain
AL539_RS00625	PF13361	UvrD-like helicase C-terminal domain
AL539_RS00630	PF07603	AL539_RS00630
AL539_RS00635	PF03160	Calx-beta domain
AL539_RS00635	PF07603	AL539_RS00635
AL539_RS00650	PF13878	AL539_RS00650
AL539_RS00655	PF05472	DNA replication terminus site-binding protein (Ter protein)
AL539_RS00665	PF01695	IstB-like ATP binding protein
AL539_RS00670	PF03050	AL539_RS00670
AL539_RS00670	PF13005	AL539_RS00670
AL539_RS00670	PF13007	AL539_RS00670
AL539_RS00670	PF13817	AL539_RS00670
AL539_RS00675	PF05717	AL539_RS00675
AL539_RS00695	PF00589	Phage integrase family
AL539_RS00715	PF06496	AL539_RS00715
AL539_RS00720	PF09370	TIM-barrel signal transduction protein
AL539_RS00725	PF06792	Uncharacterised protein family (UPF0261)
AL539_RS00730	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS00735	PF00717	Peptidase S24-like
AL539_RS00740	PF00589	Phage integrase family
AL539_RS00750	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL539_RS00755	PF02384	N-6 DNA Methylase
AL539_RS00755	PF12161	HsdM N-terminal domain
AL539_RS00760	PF01420	Type I restriction modification DNA specificity domain
AL539_RS00765	PF01926	50S ribosome-binding GTPase
AL539_RS00770	PF01926	50S ribosome-binding GTPase
AL539_RS00775	PF14281	AL539_RS00775
AL539_RS00780	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_RS00780	PF04851	Type III restriction enzyme, res subunit
AL539_RS00785	PF01863	Protein of unknown function DUF45
AL539_RS00805	PF00436	Single-strand binding protein family
AL539_RS00810	PF03837	AL539_RS00810
AL539_RS00815	PF09588	YqaJ-like viral recombinase domain
AL539_RS00820	PF07728	AAA domain (dynein-related subfamily)
AL539_RS00820	PF08406	AL539_RS00820
AL539_RS00830	PF11348	AL539_RS00830
AL539_RS00840	PF00092	von Willebrand factor type A domain
AL539_RS00845	PF04002	RadC-like JAB domain
AL539_RS00855	PF08273	Zinc-binding domain of primase-helicase
AL539_RS00855	PF13362	Toprim domain
AL539_RS00865	PF00483	Nucleotidyl transferase
AL539_RS00875	PF03350	AL539_RS00875
AL539_RS00880	PF01548	AL539_RS00880
AL539_RS00880	PF02371	AL539_RS00880
AL539_RS00885	PF00239	Resolvase, N terminal domain
AL539_RS00885	PF13384	Homeodomain-like domain
AL539_RS00890	PF05973	AL539_RS00890
AL539_RS00895	PF13744	Helix-turn-helix domain
AL539_RS00910	PF07205	AL539_RS00910
AL539_RS00925	PF11740	AL539_RS00925
AL539_RS00940	PF00589	Phage integrase family
AL539_RS00945	PF00782	Dual specificity phosphatase, catalytic domain
AL539_RS00965	PF01381	Helix-turn-helix
AL539_RS00990	PF08273	Zinc-binding domain of primase-helicase
AL539_RS00990	PF13362	Toprim domain
AL539_RS01020	PF13023	HD domain
AL539_RS01080	PF01206	Sulfurtransferase TusA
AL539_RS01115	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS01130	PF11284	AL539_RS01130
AL539_RS01150	PF06213	AL539_RS01150
AL539_RS01150	PF13519	von Willebrand factor type A domain
AL539_RS01155	PF11348	AL539_RS01155
AL539_RS01160	PF09588	YqaJ-like viral recombinase domain
AL539_RS01165	PF03837	AL539_RS01165
AL539_RS01175	PF07728	AAA domain (dynein-related subfamily)
AL539_RS01175	PF08406	AL539_RS01175
AL539_RS01195	PF08900	AL539_RS01195
AL539_RS01205	PF01609	Transposase DDE domain
AL539_RS01205	PF13808	AL539_RS01205
AL539_RS01220	PF06986	AL539_RS01220
AL539_RS01230	PF06610	AL539_RS01230
AL539_RS01240	PF02322	AL539_RS01240
AL539_RS01245	PF01654	AL539_RS01245
AL539_RS01255	PF11557	AL539_RS01255
AL539_RS01260	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS01260	PF00672	HAMP domain
AL539_RS01265	PF16576	AL539_RS01265
AL539_RS01270	PF00873	AcrB/AcrD/AcrF family
AL539_RS01275	PF01047	MarR family
AL539_RS01280	PF03547	AL539_RS01280
AL539_RS01285	PF00579	tRNA synthetases class I (W and Y)
AL539_RS01295	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS01305	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS01305	PF12729	AL539_RS01305
AL539_RS01315	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
AL539_RS01320	PF13599	Pentapeptide repeats (9 copies)
AL539_RS01340	PF08401	AL539_RS01340
AL539_RS01390	PF02384	N-6 DNA Methylase
AL539_RS01410	PF02954	Bacterial regulatory protein, Fis family
AL539_RS01420	PF11140	AL539_RS01420
AL539_RS01425	PF04851	Type III restriction enzyme, res subunit
AL539_RS01430	PF01555	DNA methylase
AL539_RS01440	PF00239	Resolvase, N terminal domain
AL539_RS01440	PF07508	Recombinase
AL539_RS01440	PF13408	Recombinase zinc beta ribbon domain
AL539_RS01455	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS01455	PF03466	LysR substrate binding domain
AL539_RS01460	PF13679	AL539_RS01460
AL539_RS01465	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL539_RS01465	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL539_RS01470	PF01037	AsnC family
AL539_RS01470	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS01475	PF01580	FtsK/SpoIIIE family
AL539_RS01475	PF09397	Ftsk gamma domain
AL539_RS01475	PF13491	AL539_RS01475
AL539_RS01480	PF03548	Outer membrane lipoprotein carrier protein LolA
AL539_RS01485	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS01485	PF12002	MgsA AAA+ ATPase C terminal
AL539_RS01485	PF16193	AL539_RS01485
AL539_RS01490	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL539_RS01490	PF02403	Seryl-tRNA synthetase N-terminal domain
AL539_RS01495	PF11860	AL539_RS01495
AL539_RS01505	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL539_RS01510	PF00202	Aminotransferase class-III
AL539_RS01515	PF04055	Radical SAM superfamily
AL539_RS01515	PF06968	Biotin and Thiamin Synthesis associated domain
AL539_RS01520	PF00155	Aminotransferase class I and II
AL539_RS01525	PF08241	Methyltransferase domain
AL539_RS01530	PF13500	AAA domain
AL539_RS01540	PF01435	Peptidase family M48
AL539_RS01545	PF12680	SnoaL-like domain
AL539_RS01550	PF00106	short chain dehydrogenase
AL539_RS01555	PF01593	Flavin containing amine oxidoreductase
AL539_RS01560	PF07103	AL539_RS01560
AL539_RS01565	PF02353	Mycolic acid cyclopropane synthetase
AL539_RS01570	PF11086	AL539_RS01570
AL539_RS01575	PF16036	AL539_RS01575
AL539_RS01580	PF12915	AL539_RS01580
AL539_RS01585	PF00206	Lyase
AL539_RS01585	PF08328	Adenylosuccinate lyase C-terminal
AL539_RS01590	PF04356	Protein of unknown function (DUF489)
AL539_RS01595	PF03054	tRNA methyl transferase
AL539_RS01605	PF00294	pfkB family carbohydrate kinase
AL539_RS01610	PF00816	H-NS histone family
AL539_RS01615	PF03553	AL539_RS01615
AL539_RS01620	PF01634	ATP phosphoribosyltransferase
AL539_RS01620	PF08029	HisG, C-terminal domain
AL539_RS01625	PF00815	Histidinol dehydrogenase
AL539_RS01630	PF00155	Aminotransferase class I and II
AL539_RS01635	PF00475	Imidazoleglycerol-phosphate dehydratase
AL539_RS01635	PF08645	Polynucleotide kinase 3 phosphatase
AL539_RS01640	PF00117	Glutamine amidotransferase class-I
AL539_RS01645	PF00977	Histidine biosynthesis protein
AL539_RS01650	PF00977	Histidine biosynthesis protein
AL539_RS01655	PF01502	Phosphoribosyl-AMP cyclohydrolase
AL539_RS01655	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL539_RS01660	PF02810	SEC-C motif
AL539_RS01665	PF00563	EAL domain
AL539_RS01665	PF08668	HDOD domain
AL539_RS01670	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL539_RS01675	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL539_RS01680	PF01406	tRNA synthetases class I (C) catalytic domain
AL539_RS01680	PF09190	DALR domain
AL539_RS01685	PF00265	Thymidine kinase
AL539_RS01690	PF02698	DUF218 domain
AL539_RS01695	PF01370	NAD dependent epimerase/dehydratase family
AL539_RS01700	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS01700	PF03466	LysR substrate binding domain
AL539_RS01705	PF05232	AL539_RS01705
AL539_RS01710	PF06146	AL539_RS01710
AL539_RS01715	PF01226	Formate/nitrite transporter
AL539_RS01725	PF03649	AL539_RS01725
AL539_RS01730	PF06796	AL539_RS01730
AL539_RS01735	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL539_RS01740	PF00384	Molybdopterin oxidoreductase
AL539_RS01740	PF01568	Molydopterin dinucleotide binding domain
AL539_RS01745	PF02065	Melibiase
AL539_RS01750	PF11449	AL539_RS01750
AL539_RS01755	PF01368	DHH family
AL539_RS01755	PF02833	DHHA2 domain
AL539_RS01760	PF11042	AL539_RS01760
AL539_RS01765	PF00005	ABC transporter
AL539_RS01770	PF00005	ABC transporter
AL539_RS01770	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS01775	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS01775	PF12911	AL539_RS01775
AL539_RS01780	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS01785	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS01790	PF00158	Sigma-54 interaction domain
AL539_RS01790	PF02954	Bacterial regulatory protein, Fis family
AL539_RS01795	PF04012	AL539_RS01795
AL539_RS01800	PF06667	AL539_RS01800
AL539_RS01805	PF04024	AL539_RS01805
AL539_RS01810	PF16576	AL539_RS01810
AL539_RS01815	PF13437	HlyD family secretion protein
AL539_RS01815	PF13533	Biotin-lipoyl like
AL539_RS01820	PF00873	AcrB/AcrD/AcrF family
AL539_RS01825	PF03352	Methyladenine glycosylase
AL539_RS01830	PF03280	Proteobacterial lipase chaperone protein
AL539_RS01835	PF00561	alpha/beta hydrolase fold
AL539_RS01840	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL539_RS01845	PF13091	PLD-like domain
AL539_RS01845	PF13396	AL539_RS01845
AL539_RS01850	PF00209	Sodium:neurotransmitter symporter family
AL539_RS01855	PF00849	RNA pseudouridylate synthase
AL539_RS01860	PF10672	S-adenosylmethionine-dependent methyltransferase
AL539_RS01865	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS01865	PF00175	Oxidoreductase NAD-binding domain
AL539_RS01865	PF00970	Oxidoreductase FAD-binding domain
AL539_RS01870	PF03063	Prismane/CO dehydrogenase family
AL539_RS01875	PF00158	Sigma-54 interaction domain
AL539_RS01875	PF02954	Bacterial regulatory protein, Fis family
AL539_RS01885	PF05433	AL539_RS01885
AL539_RS01890	PF01066	CDP-alcohol phosphatidyltransferase
AL539_RS01895	PF00005	ABC transporter
AL539_RS01905	PF13416	Bacterial extracellular solute-binding protein
AL539_RS01910	PF03724	META domain
AL539_RS01915	PF06945	AL539_RS01915
AL539_RS01930	PF00149	Calcineurin-like phosphoesterase
AL539_RS01930	PF02872	5'-nucleotidase, C-terminal domain
AL539_RS01935	PF00583	Acetyltransferase (GNAT) family
AL539_RS01940	PF01386	Ribosomal L25p family
AL539_RS01945	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS01950	PF00072	Response regulator receiver domain
AL539_RS01950	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS01960	PF00271	Helicase conserved C-terminal domain
AL539_RS01960	PF04851	Type III restriction enzyme, res subunit
AL539_RS01965	PF00849	RNA pseudouridylate synthase
AL539_RS01965	PF01479	S4 domain
AL539_RS01975	PF07690	Major Facilitator Superfamily
AL539_RS01980	PF11140	AL539_RS01980
AL539_RS01985	PF11066	AL539_RS01985
AL539_RS01985	PF13460	NADH(P)-binding
AL539_RS01990	PF01554	MatE
AL539_RS01995	PF00005	ABC transporter
AL539_RS02000	PF02687	AL539_RS02000
AL539_RS02005	PF07143	Hydroxyneurosporene synthase (CrtC)
AL539_RS02005	PF17186	AL539_RS02005
AL539_RS02010	PF06965	Na+/H+ antiporter 1
AL539_RS02015	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS02020	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_RS02020	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_RS02020	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_RS02020	PF09317	AL539_RS02020
AL539_RS02025	PF07055	Enoyl reductase FAD binding domain
AL539_RS02025	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL539_RS02025	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL539_RS02030	PF02080	TrkA-C domain
AL539_RS02030	PF06826	AL539_RS02030
AL539_RS02035	PF00462	Glutaredoxin
AL539_RS02040	PF00465	Iron-containing alcohol dehydrogenase
AL539_RS02045	PF01380	SIS domain
AL539_RS02045	PF01418	Helix-turn-helix domain, rpiR family
AL539_RS02050	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL539_RS02060	PF03956	AL539_RS02060
AL539_RS02065	PF08668	HDOD domain
AL539_RS02080	PF04993	TfoX N-terminal domain
AL539_RS02080	PF04994	TfoX C-terminal domain
AL539_RS02090	PF00072	Response regulator receiver domain
AL539_RS02095	PF00027	Cyclic nucleotide-binding domain
AL539_RS02095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS02100	PF06097	AL539_RS02100
AL539_RS02105	PF00266	Aminotransferase class-V
AL539_RS02110	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS02115	PF00005	ABC transporter
AL539_RS02115	PF00664	ABC transporter transmembrane region
AL539_RS02120	PF00005	ABC transporter
AL539_RS02120	PF00664	ABC transporter transmembrane region
AL539_RS02125	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS02130	PF10014	2OG-Fe dioxygenase
AL539_RS02135	PF00266	Aminotransferase class-V
AL539_RS02140	PF10977	AL539_RS02140
AL539_RS02145	PF00990	GGDEF domain
AL539_RS02145	PF08547	Complex I intermediate-associated protein 30 (CIA30)
AL539_RS02150	PF00939	Sodium:sulfate symporter transmembrane region
AL539_RS02155	PF02698	DUF218 domain
AL539_RS02160	PF00390	Malic enzyme, N-terminal domain
AL539_RS02160	PF03949	Malic enzyme, NAD binding domain
AL539_RS02165	PF00270	DEAD/DEAH box helicase
AL539_RS02165	PF00271	Helicase conserved C-terminal domain
AL539_RS02165	PF04408	Helicase associated domain (HA2)
AL539_RS02175	PF09423	PhoD-like phosphatase
AL539_RS02175	PF16655	AL539_RS02175
AL539_RS02180	PF01259	SAICAR synthetase
AL539_RS02185	PF03846	Cell division inhibitor SulA
AL539_RS02200	PF00691	OmpA family
AL539_RS02200	PF13488	AL539_RS02200
AL539_RS02205	PF10979	AL539_RS02205
AL539_RS02210	PF11813	AL539_RS02210
AL539_RS02215	PF01565	FAD binding domain
AL539_RS02215	PF02913	FAD linked oxidases, C-terminal domain
AL539_RS02215	PF13183	4Fe-4S dicluster domain
AL539_RS02220	PF04191	Phospholipid methyltransferase
AL539_RS02225	PF12119	AL539_RS02225
AL539_RS02230	PF00221	Aromatic amino acid lyase
AL539_RS02235	PF01175	Urocanase
AL539_RS02235	PF17391	AL539_RS02235
AL539_RS02235	PF17392	AL539_RS02235
AL539_RS02240	PF00491	Arginase family
AL539_RS02245	PF01979	Amidohydrolase family
AL539_RS02250	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS02250	PF07702	UTRA domain
AL539_RS02255	PF07070	AL539_RS02255
AL539_RS02260	PF11383	AL539_RS02260
AL539_RS02265	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL539_RS02265	PF02824	TGS domain
AL539_RS02265	PF03129	Anticodon binding domain
AL539_RS02265	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL539_RS02270	PF00707	Translation initiation factor IF-3, C-terminal domain
AL539_RS02270	PF05198	Translation initiation factor IF-3, N-terminal domain
AL539_RS02275	PF01632	Ribosomal protein L35
AL539_RS02280	PF00453	Ribosomal protein L20
AL539_RS02285	PF01906	Putative heavy-metal-binding
AL539_RS02290	PF13443	Cro/C1-type HTH DNA-binding domain
AL539_RS02300	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS02305	PF03176	MMPL family
AL539_RS02310	PF17131	AL539_RS02310
AL539_RS02320	PF01409	tRNA synthetases class II core domain (F)
AL539_RS02320	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AL539_RS02325	PF01588	Putative tRNA binding domain
AL539_RS02325	PF03147	Ferredoxin-fold anticodon binding domain
AL539_RS02325	PF03483	B3/4 domain
AL539_RS02325	PF03484	tRNA synthetase B5 domain
AL539_RS02330	PF03547	AL539_RS02330
AL539_RS02335	PF00216	Bacterial DNA-binding protein
AL539_RS02345	PF05724	Thiopurine S-methyltransferase (TPMT)
AL539_RS02350	PF02222	ATP-grasp domain
AL539_RS02355	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_RS02355	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_RS02360	PF04172	AL539_RS02360
AL539_RS02365	PF03788	AL539_RS02365
AL539_RS02370	PF00929	Exonuclease
AL539_RS02370	PF08411	Exonuclease C-terminal
AL539_RS02375	PF00375	Sodium:dicarboxylate symporter family
AL539_RS02380	PF08732	AL539_RS02380
AL539_RS02385	PF02277	Phosphoribosyltransferase
AL539_RS02390	PF02654	AL539_RS02390
AL539_RS02395	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
AL539_RS02400	PF00300	Histidine phosphatase superfamily (branch 1)
AL539_RS02405	PF01432	Peptidase family M3
AL539_RS02405	PF08439	Oligopeptidase F
AL539_RS02410	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_RS02415	PF01032	FecCD transport family
AL539_RS02420	PF00005	ABC transporter
AL539_RS02425	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL539_RS02430	PF07209	AL539_RS02430
AL539_RS02435	PF07690	Major Facilitator Superfamily
AL539_RS02440	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS02440	PF03466	LysR substrate binding domain
AL539_RS02445	PF00462	Glutaredoxin
AL539_RS02450	PF01863	Protein of unknown function DUF45
AL539_RS02455	PF05971	Protein of unknown function (DUF890)
AL539_RS02465	PF03572	Peptidase family S41
AL539_RS02475	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS02475	PF07729	FCD domain
AL539_RS02480	PF00171	Aldehyde dehydrogenase family
AL539_RS02485	PF05544	Proline racemase
AL539_RS02490	PF01266	FAD dependent oxidoreductase
AL539_RS02495	PF13416	Bacterial extracellular solute-binding protein
AL539_RS02500	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AL539_RS02505	PF00701	Dihydrodipicolinate synthetase family
AL539_RS02510	PF00005	ABC transporter
AL539_RS02510	PF08402	TOBE domain
AL539_RS02515	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS02520	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS02530	PF00801	PKD domain
AL539_RS02530	PF01752	Collagenase
AL539_RS02530	PF08453	Peptidase family M9 N-terminal
AL539_RS02535	PF00557	Metallopeptidase family M24
AL539_RS02535	PF01321	Creatinase/Prolidase N-terminal domain
AL539_RS02535	PF16188	AL539_RS02535
AL539_RS02535	PF16189	AL539_RS02535
AL539_RS02540	PF00005	ABC transporter
AL539_RS02540	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS02545	PF00005	ABC transporter
AL539_RS02545	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS02550	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS02550	PF12911	AL539_RS02550
AL539_RS02555	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS02560	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS02565	PF01546	Peptidase family M20/M25/M40
AL539_RS02565	PF07687	Peptidase dimerisation domain
AL539_RS02570	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS02570	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
AL539_RS02575	PF04209	homogentisate 1,2-dioxygenase
AL539_RS02580	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL539_RS02585	PF13417	Glutathione S-transferase, N-terminal domain
AL539_RS02590	PF10881	AL539_RS02590
AL539_RS02670	PF14412	AL539_RS02670
AL539_RS02695	PF11665	AL539_RS02695
AL539_RS02735	PF08818	Domain of unknown function (DU1801)
AL539_RS02750	PF14234	AL539_RS02750
AL539_RS02755	PF03553	AL539_RS02755
AL539_RS02760	PF00120	Glutamine synthetase, catalytic domain
AL539_RS02770	PF07722	Peptidase C26
AL539_RS02775	PF01381	Helix-turn-helix
AL539_RS02775	PF07883	Cupin domain
AL539_RS02780	PF00171	Aldehyde dehydrogenase family
AL539_RS02785	PF01266	FAD dependent oxidoreductase
AL539_RS02790	PF00795	Carbon-nitrogen hydrolase
AL539_RS02795	PF04371	Porphyromonas-type peptidyl-arginine deiminase
AL539_RS02800	PF00171	Aldehyde dehydrogenase family
AL539_RS02805	PF00202	Aminotransferase class-III
AL539_RS02810	PF00563	EAL domain
AL539_RS02815	PF00892	EamA-like transporter family
AL539_RS02820	PF01047	MarR family
AL539_RS02825	PF04237	YjbR
AL539_RS02830	PF06127	AL539_RS02830
AL539_RS02850	PF00072	Response regulator receiver domain
AL539_RS02850	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS02850	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS02855	PF00563	EAL domain
AL539_RS02855	PF00990	GGDEF domain
AL539_RS02860	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL539_RS02865	PF13431	Tetratricopeptide repeat
AL539_RS02870	PF04204	Homoserine O-succinyltransferase
AL539_RS02880	PF00893	Small Multidrug Resistance protein
AL539_RS02885	PF03279	AL539_RS02885
AL539_RS02890	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
AL539_RS02895	PF01810	AL539_RS02895
AL539_RS02905	PF01235	AL539_RS02905
AL539_RS02930	PF00884	Sulfatase
AL539_RS02935	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL539_RS02940	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS02945	PF00005	ABC transporter
AL539_RS02945	PF00571	CBS domain
AL539_RS02950	PF00027	Cyclic nucleotide-binding domain
AL539_RS02950	PF00571	CBS domain
AL539_RS02950	PF03445	AL539_RS02950
AL539_RS02950	PF10335	AL539_RS02950
AL539_RS02955	PF00929	Exonuclease
AL539_RS02960	PF02028	BCCT family transporter
AL539_RS02965	PF00583	Acetyltransferase (GNAT) family
AL539_RS02970	PF00202	Aminotransferase class-III
AL539_RS02975	PF06339	AL539_RS02975
AL539_RS02980	PF00696	Amino acid kinase family
AL539_RS02985	PF00884	Sulfatase
AL539_RS02985	PF14707	C-terminal region of aryl-sulfatase
AL539_RS02990	PF13414	TPR repeat
AL539_RS02990	PF13432	Tetratricopeptide repeat
AL539_RS02990	PF13435	Cytochrome c554 and c-prime
AL539_RS02995	PF03781	Sulfatase-modifying factor enzyme 1
AL539_RS03000	PF04055	Radical SAM superfamily
AL539_RS03000	PF13186	Iron-sulfur cluster-binding domain
AL539_RS03010	PF12710	haloacid dehalogenase-like hydrolase
AL539_RS03015	PF00884	Sulfatase
AL539_RS03020	PF00884	Sulfatase
AL539_RS03035	PF13437	HlyD family secretion protein
AL539_RS03040	PF02321	Outer membrane efflux protein
AL539_RS03045	PF00691	OmpA family
AL539_RS03055	PF00455	AL539_RS03055
AL539_RS03055	PF08220	DeoR-like helix-turn-helix domain
AL539_RS03060	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_RS03060	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AL539_RS03065	PF03928	Domain of unknown function (DUF336)
AL539_RS03070	PF00990	GGDEF domain
AL539_RS03070	PF02743	Cache domain
AL539_RS03075	PF12570	AL539_RS03075
AL539_RS03085	PF13673	Acetyltransferase (GNAT) domain
AL539_RS03090	PF00939	Sodium:sulfate symporter transmembrane region
AL539_RS03095	PF00027	Cyclic nucleotide-binding domain
AL539_RS03095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS03100	PF00072	Response regulator receiver domain
AL539_RS03105	PF00563	EAL domain
AL539_RS03105	PF00990	GGDEF domain
AL539_RS03105	PF08447	PAS fold
AL539_RS03110	PF01966	HD domain
AL539_RS03110	PF11871	AL539_RS03110
AL539_RS03115	PF01810	AL539_RS03115
AL539_RS03120	PF11230	AL539_RS03120
AL539_RS03125	PF04055	Radical SAM superfamily
AL539_RS03125	PF13353	4Fe-4S single cluster domain
AL539_RS03130	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS03130	PF03466	LysR substrate binding domain
AL539_RS03135	PF03741	AL539_RS03135
AL539_RS03140	PF13640	2OG-Fe(II) oxygenase superfamily
AL539_RS03145	PF01966	HD domain
AL539_RS03150	PF00465	Iron-containing alcohol dehydrogenase
AL539_RS03155	PF03222	Tryptophan/tyrosine permease family
AL539_RS03160	PF13487	HD domain
AL539_RS03170	PF00005	ABC transporter
AL539_RS03175	PF01497	Periplasmic binding protein
AL539_RS03180	PF01032	FecCD transport family
AL539_RS03185	PF00593	TonB dependent receptor
AL539_RS03185	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS03195	PF00005	ABC transporter
AL539_RS03195	PF00664	ABC transporter transmembrane region
AL539_RS03200	PF00005	ABC transporter
AL539_RS03200	PF00664	ABC transporter transmembrane region
AL539_RS03205	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS03210	PF03616	AL539_RS03210
AL539_RS03215	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS03215	PF03466	LysR substrate binding domain
AL539_RS03220	PF03992	Antibiotic biosynthesis monooxygenase
AL539_RS03225	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_RS03230	PF03352	Methyladenine glycosylase
AL539_RS03240	PF00012	Hsp70 protein
AL539_RS03240	PF12531	AL539_RS03240
AL539_RS03245	PF00012	Hsp70 protein
AL539_RS03250	PF10816	AL539_RS03250
AL539_RS03255	PF00990	GGDEF domain
AL539_RS03255	PF03924	CHASE domain
AL539_RS03260	PF00929	Exonuclease
AL539_RS03265	PF05099	Tellurite resistance protein TerB
AL539_RS03270	PF09423	PhoD-like phosphatase
AL539_RS03280	PF06629	AL539_RS03280
AL539_RS03290	PF02525	Flavodoxin-like fold
AL539_RS03295	PF00270	DEAD/DEAH box helicase
AL539_RS03295	PF00271	Helicase conserved C-terminal domain
AL539_RS03295	PF04408	Helicase associated domain (HA2)
AL539_RS03295	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AL539_RS03295	PF11898	AL539_RS03295
AL539_RS03300	PF13505	Outer membrane protein beta-barrel domain
AL539_RS03305	PF13505	Outer membrane protein beta-barrel domain
AL539_RS03310	PF02028	BCCT family transporter
AL539_RS03315	PF13671	AAA domain
AL539_RS03320	PF02397	AL539_RS03320
AL539_RS03325	PF13641	Glycosyltransferase like family 2
AL539_RS03330	PF00534	Glycosyl transferases group 1
AL539_RS03330	PF13439	Glycosyltransferase Family 4
AL539_RS03340	PF13692	Glycosyl transferases group 1
AL539_RS03345	PF04932	AL539_RS03345
AL539_RS03350	PF01943	AL539_RS03350
AL539_RS03355	PF00534	Glycosyl transferases group 1
AL539_RS03360	PF00534	Glycosyl transferases group 1
AL539_RS03360	PF13439	Glycosyltransferase Family 4
AL539_RS03365	PF13439	Glycosyltransferase Family 4
AL539_RS03365	PF13692	Glycosyl transferases group 1
AL539_RS03370	PF00072	Response regulator receiver domain
AL539_RS03370	PF00158	Sigma-54 interaction domain
AL539_RS03370	PF02954	Bacterial regulatory protein, Fis family
AL539_RS03375	PF01627	Hpt domain
AL539_RS03385	PF02563	Polysaccharide biosynthesis/export protein
AL539_RS03385	PF10531	SLBB domain
AL539_RS03390	PF00691	OmpA family
AL539_RS03395	PF13466	STAS domain
AL539_RS03400	PF01068	ATP dependent DNA ligase domain
AL539_RS03400	PF14743	DNA ligase OB-like domain
AL539_RS03405	PF11279	AL539_RS03405
AL539_RS03410	PF01554	MatE
AL539_RS03415	PF00677	Lumazine binding domain
AL539_RS03420	PF14255	AL539_RS03420
AL539_RS03425	PF03881	Fructosamine kinase
AL539_RS03430	PF00072	Response regulator receiver domain
AL539_RS03435	PF00990	GGDEF domain
AL539_RS03440	PF12290	AL539_RS03440
AL539_RS03445	PF00877	NlpC/P60 family
AL539_RS03450	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS03455	PF00293	NUDIX domain
AL539_RS03460	PF00293	NUDIX domain
AL539_RS03475	PF04116	AL539_RS03475
AL539_RS03480	PF03942	AL539_RS03480
AL539_RS03485	PF00480	ROK family
AL539_RS03490	PF11173	AL539_RS03490
AL539_RS03495	PF00994	Probable molybdopterin binding domain
AL539_RS03495	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AL539_RS03495	PF03453	MoeA N-terminal region (domain I and II)
AL539_RS03495	PF03454	MoeA C-terminal region (domain IV)
AL539_RS03500	PF12804	MobA-like NTP transferase domain
AL539_RS03505	PF00005	ABC transporter
AL539_RS03510	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS03515	PF12849	PBP superfamily domain
AL539_RS03520	PF00072	Response regulator receiver domain
AL539_RS03520	PF00158	Sigma-54 interaction domain
AL539_RS03520	PF02954	Bacterial regulatory protein, Fis family
AL539_RS03525	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS03525	PF00672	HAMP domain
AL539_RS03525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS03525	PF17202	AL539_RS03525
AL539_RS03535	PF00005	ABC transporter
AL539_RS03535	PF12848	ABC transporter
AL539_RS03540	PF02634	FdhD/NarQ family
AL539_RS03545	PF11749	AL539_RS03545
AL539_RS03550	PF11748	AL539_RS03550
AL539_RS03555	PF00037	4Fe-4S binding domain
AL539_RS03555	PF12838	4Fe-4S dicluster domain
AL539_RS03560	PF02613	Nitrate reductase delta subunit
AL539_RS03570	PF00384	Molybdopterin oxidoreductase
AL539_RS03570	PF01568	Molydopterin dinucleotide binding domain
AL539_RS03570	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_RS03575	PF13247	4Fe-4S dicluster domain
AL539_RS03580	PF01292	Prokaryotic cytochrome b561
AL539_RS03590	PF03527	AL539_RS03590
AL539_RS03590	PF05593	AL539_RS03590
AL539_RS03595	PF15575	AL539_RS03595
AL539_RS03610	PF15575	AL539_RS03610
AL539_RS03620	PF15575	AL539_RS03620
AL539_RS03625	PF15575	AL539_RS03625
AL539_RS03635	PF15575	AL539_RS03635
AL539_RS03640	PF15575	AL539_RS03640
AL539_RS03650	PF15575	AL539_RS03650
AL539_RS03655	PF15575	AL539_RS03655
AL539_RS03665	PF15575	AL539_RS03665
AL539_RS03670	PF14567	SMI1-KNR4 cell-wall
AL539_RS03675	PF15575	AL539_RS03675
AL539_RS03705	PF12796	Ankyrin repeats (3 copies)
AL539_RS03710	PF00909	Ammonium Transporter Family
AL539_RS03715	PF02146	Sir2 family
AL539_RS03720	PF13416	Bacterial extracellular solute-binding protein
AL539_RS03725	PF13416	Bacterial extracellular solute-binding protein
AL539_RS03730	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS03735	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS03740	PF00005	ABC transporter
AL539_RS03740	PF08402	TOBE domain
AL539_RS03750	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL539_RS03755	PF11205	AL539_RS03755
AL539_RS03760	PF01171	PP-loop family
AL539_RS03765	PF00582	Universal stress protein family
AL539_RS03770	PF00027	Cyclic nucleotide-binding domain
AL539_RS03770	PF13545	Crp-like helix-turn-helix domain
AL539_RS03775	PF13386	AL539_RS03775
AL539_RS03780	PF03597	AL539_RS03780
AL539_RS03785	PF00122	E1-E2 ATPase
AL539_RS03785	PF00403	Heavy-metal-associated domain
AL539_RS03785	PF00702	haloacid dehalogenase-like hydrolase
AL539_RS03785	PF12156	AL539_RS03785
AL539_RS03790	PF05751	AL539_RS03790
AL539_RS03795	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_RS03795	PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
AL539_RS03800	PF05545	AL539_RS03800
AL539_RS03805	PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
AL539_RS03810	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL539_RS03820	PF08495	AL539_RS03820
AL539_RS03820	PF10442	AL539_RS03820
AL539_RS03825	PF00072	Response regulator receiver domain
AL539_RS03825	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS03825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS03830	PF14412	AL539_RS03830
AL539_RS03850	PF12321	AL539_RS03850
AL539_RS03855	PF06303	Organiser of macrodomain of Terminus of chromosome
AL539_RS03855	PF17414	AL539_RS03855
AL539_RS03860	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL539_RS03860	PF13654	AAA domain
AL539_RS03865	PF07977	FabA-like domain
AL539_RS03870	PF04957	Ribosome modulation factor
AL539_RS03875	PF11949	AL539_RS03875
AL539_RS03880	PF00005	ABC transporter
AL539_RS03880	PF12848	ABC transporter
AL539_RS03880	PF16326	AL539_RS03880
AL539_RS03885	PF05768	Glutaredoxin-like domain (DUF836)
AL539_RS03890	PF01170	Putative RNA methylase family UPF0020
AL539_RS03890	PF02926	THUMP domain
AL539_RS03890	PF10672	S-adenosylmethionine-dependent methyltransferase
AL539_RS03895	PF07126	AL539_RS03895
AL539_RS03900	PF01180	Dihydroorotate dehydrogenase
AL539_RS03905	PF05088	AL539_RS03905
AL539_RS03910	PF11197	AL539_RS03910
AL539_RS03915	PF01433	Peptidase family M1
AL539_RS03915	PF11940	Domain of unknown function (DUF3458)
AL539_RS03915	PF17432	AL539_RS03915
AL539_RS03925	PF00595	PDZ domain (Also known as DHR or GLGF)
AL539_RS03925	PF03572	Peptidase family S41
AL539_RS03925	PF08180	AL539_RS03925
AL539_RS03925	PF11818	AL539_RS03925
AL539_RS03930	PF04352	ProQ/FINO family
AL539_RS03930	PF17516	AL539_RS03930
AL539_RS03935	PF13185	GAF domain
AL539_RS03940	PF00005	ABC transporter
AL539_RS03940	PF00664	ABC transporter transmembrane region
AL539_RS03945	PF04403	AL539_RS03945
AL539_RS03950	PF02470	AL539_RS03950
AL539_RS03955	PF01189	NOL1/NOP2/sun family
AL539_RS03955	PF13636	pre-rRNA processing and ribosome biogenesis
AL539_RS03955	PF17125	AL539_RS03955
AL539_RS03960	PF13509	S1 domain
AL539_RS03970	PF14539	Domain of unknown function (DUF4442)
AL539_RS03975	PF00793	DAHP synthetase I family
AL539_RS03980	PF04461	Protein of unknown function (DUF520)
AL539_RS03985	PF10414	Sirohaem synthase dimerisation region
AL539_RS03985	PF13241	Putative NAD(P)-binding
AL539_RS03985	PF14824	Sirohaem biosynthesis protein central
AL539_RS03995	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS04000	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS04005	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS04010	PF00005	ABC transporter
AL539_RS04015	PF01027	Inhibitor of apoptosis-promoting Bax1
AL539_RS04025	PF04358	DsrC like protein
AL539_RS04030	PF00708	Acylphosphatase
AL539_RS04035	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS04040	PF10672	S-adenosylmethionine-dependent methyltransferase
AL539_RS04050	PF02321	Outer membrane efflux protein
AL539_RS04055	PF00691	OmpA family
AL539_RS04090	PF02321	Outer membrane efflux protein
AL539_RS04095	PF00691	OmpA family
AL539_RS04100	PF11042	AL539_RS04100
AL539_RS04105	PF00990	GGDEF domain
AL539_RS04105	PF13424	Tetratricopeptide repeat
AL539_RS04110	PF01614	Bacterial transcriptional regulator
AL539_RS04110	PF09339	IclR helix-turn-helix domain
AL539_RS04115	PF00106	short chain dehydrogenase
AL539_RS04120	PF00248	Aldo/keto reductase family
AL539_RS04125	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS04125	PF03466	LysR substrate binding domain
AL539_RS04130	PF00296	Luciferase-like monooxygenase
AL539_RS04135	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS04135	PF03466	LysR substrate binding domain
AL539_RS04140	PF07690	Major Facilitator Superfamily
AL539_RS04145	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS04150	PF00107	Zinc-binding dehydrogenase
AL539_RS04150	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS04155	PF01965	DJ-1/PfpI family
AL539_RS04155	PF12833	Helix-turn-helix domain
AL539_RS04160	PF00857	Isochorismatase family
AL539_RS04165	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS04170	PF03773	AL539_RS04170
AL539_RS04175	PF00107	Zinc-binding dehydrogenase
AL539_RS04175	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS04180	PF02574	Homocysteine S-methyltransferase
AL539_RS04185	PF00005	ABC transporter
AL539_RS04190	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS04195	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS04200	PF11777	AL539_RS04200
AL539_RS04205	PF13609	Gram-negative porin
AL539_RS04210	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS04210	PF03466	LysR substrate binding domain
AL539_RS04215	PF16576	AL539_RS04215
AL539_RS04220	PF00873	AcrB/AcrD/AcrF family
AL539_RS04225	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS04225	PF03466	LysR substrate binding domain
AL539_RS04235	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS04235	PF03466	LysR substrate binding domain
AL539_RS04240	PF01810	AL539_RS04240
AL539_RS04245	PF12844	Helix-turn-helix domain
AL539_RS04250	PF06508	Queuosine biosynthesis protein QueC
AL539_RS04255	PF13394	4Fe-4S single cluster domain
AL539_RS04260	PF08282	haloacid dehalogenase-like hydrolase
AL539_RS04265	PF00293	NUDIX domain
AL539_RS04270	PF00089	Trypsin
AL539_RS04270	PF02839	Carbohydrate binding domain
AL539_RS04275	PF00583	Acetyltransferase (GNAT) family
AL539_RS04280	PF00501	AMP-binding enzyme
AL539_RS04280	PF13193	AMP-binding enzyme C-terminal domain
AL539_RS04280	PF16177	AL539_RS04280
AL539_RS04285	PF04303	PrpF protein
AL539_RS04290	PF00330	Aconitase family (aconitate hydratase)
AL539_RS04290	PF00694	Aconitase C-terminal domain
AL539_RS04295	PF00285	Citrate synthase
AL539_RS04300	PF13714	Phosphoenolpyruvate phosphomutase
AL539_RS04305	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS04305	PF07729	FCD domain
AL539_RS04310	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_RS04315	PF03401	Tripartite tricarboxylate transporter family receptor
AL539_RS04320	PF07331	AL539_RS04320
AL539_RS04325	PF01970	AL539_RS04325
AL539_RS04335	PF01925	AL539_RS04335
AL539_RS04340	PF16868	AL539_RS04340
AL539_RS04350	PF05844	YopD protein
AL539_RS04355	PF04888	AL539_RS04355
AL539_RS04360	PF07720	Tetratricopeptide repeat
AL539_RS04365	PF04792	V antigen (LcrV) protein
AL539_RS04370	PF07216	AL539_RS04370
AL539_RS04375	PF09621	AL539_RS04375
AL539_RS04380	PF00771	FHIPEP family
AL539_RS04385	PF14559	Tetratricopeptide repeat
AL539_RS04390	PF09474	AL539_RS04390
AL539_RS04400	PF09059	TyeA
AL539_RS04405	PF07201	HrpJ-like domain
AL539_RS04410	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_RS04410	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL539_RS04415	PF07321	Type III secretion protein YscO
AL539_RS04425	PF01052	Surface presentation of antigens (SPOA)
AL539_RS04430	PF00813	AL539_RS04430
AL539_RS04435	PF01313	AL539_RS04435
AL539_RS04440	PF01311	AL539_RS04440
AL539_RS04445	PF01312	FlhB HrpN YscU SpaS Family
AL539_RS04450	PF12833	Helix-turn-helix domain
AL539_RS04455	PF00892	EamA-like transporter family
AL539_RS04465	PF05932	Tir chaperone protein (CesT) family
AL539_RS04475	PF05932	Tir chaperone protein (CesT) family
AL539_RS04480	PF02661	Fic/DOC family
AL539_RS04485	PF05932	Tir chaperone protein (CesT) family
AL539_RS04490	PF02108	AL539_RS04490
AL539_RS04495	PF06578	AL539_RS04495
AL539_RS04500	PF01514	Secretory protein of YscJ/FliF family
AL539_RS04505	PF17001	AL539_RS04505
AL539_RS04510	PF09025	YopR Core
AL539_RS04515	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
AL539_RS04520	PF09392	Type III secretion needle MxiH like
AL539_RS04525	PF08988	Protein of unknown function (DUF1895)
AL539_RS04530	PF16693	AL539_RS04530
AL539_RS04530	PF16697	AL539_RS04530
AL539_RS04535	PF00263	AL539_RS04535
AL539_RS04535	PF03958	Bacterial type II/III secretion system short domain
AL539_RS04540	PF05932	Tir chaperone protein (CesT) family
AL539_RS04545	PF16806	AL539_RS04545
AL539_RS04550	PF12833	Helix-turn-helix domain
AL539_RS04555	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL539_RS04560	PF05932	Tir chaperone protein (CesT) family
AL539_RS04570	PF00171	Aldehyde dehydrogenase family
AL539_RS04575	PF00158	Sigma-54 interaction domain
AL539_RS04575	PF01590	GAF domain
AL539_RS04575	PF02954	Bacterial regulatory protein, Fis family
AL539_RS04590	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AL539_RS04590	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_RS04595	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL539_RS04600	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AL539_RS04600	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AL539_RS04605	PF12833	Helix-turn-helix domain
AL539_RS04605	PF14526	Integron-associated effector binding protein
AL539_RS04610	PF00593	TonB dependent receptor
AL539_RS04610	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS04615	PF00072	Response regulator receiver domain
AL539_RS04615	PF08279	HTH domain
AL539_RS04615	PF12431	AL539_RS04615
AL539_RS04620	PF00989	PAS fold
AL539_RS04620	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS04620	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL539_RS04620	PF17203	AL539_RS04620
AL539_RS04630	PF02321	Outer membrane efflux protein
AL539_RS04635	PF13437	HlyD family secretion protein
AL539_RS04635	PF13533	Biotin-lipoyl like
AL539_RS04640	PF12698	ABC-2 family transporter protein
AL539_RS04645	PF12698	ABC-2 family transporter protein
AL539_RS04650	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS04650	PF03466	LysR substrate binding domain
AL539_RS04660	PF01734	Patatin-like phospholipase
AL539_RS04665	PF08543	Phosphomethylpyrimidine kinase
AL539_RS04670	PF00155	Aminotransferase class I and II
AL539_RS04675	PF02080	TrkA-C domain
AL539_RS04675	PF06826	AL539_RS04675
AL539_RS04680	PF07869	AL539_RS04680
AL539_RS04685	PF16576	AL539_RS04685
AL539_RS04690	PF04632	AL539_RS04690
AL539_RS04705	PF13091	PLD-like domain
AL539_RS04715	PF11008	AL539_RS04715
AL539_RS04720	PF01810	AL539_RS04720
AL539_RS04725	PF01810	AL539_RS04725
AL539_RS04730	PF07237	Protein of unknown function (DUF1428)
AL539_RS04740	PF03992	Antibiotic biosynthesis monooxygenase
AL539_RS04745	PF03992	Antibiotic biosynthesis monooxygenase
AL539_RS04750	PF01411	tRNA synthetases class II (A)
AL539_RS04750	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL539_RS04755	PF13302	Acetyltransferase (GNAT) domain
AL539_RS04760	PF12464	Maltose acetyltransferase
AL539_RS04760	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_RS04765	PF06271	AL539_RS04765
AL539_RS04770	PF01243	Pyridoxamine 5'-phosphate oxidase
AL539_RS04775	PF09413	Domain of unknown function (DUF2007)
AL539_RS04785	PF16695	AL539_RS04785
AL539_RS04790	PF13527	Acetyltransferase (GNAT) domain
AL539_RS04795	PF05016	Plasmid stabilisation system protein
AL539_RS04810	PF11665	AL539_RS04810
AL539_RS04820	PF04634	Protein of unknown function, DUF600
AL539_RS04825	PF11665	AL539_RS04825
AL539_RS04835	PF11665	AL539_RS04835
AL539_RS04845	PF11665	AL539_RS04845
AL539_RS04870	PF03831	PhnA protein
AL539_RS04870	PF08274	PhnA Zinc-Ribbon
AL539_RS04880	PF11665	AL539_RS04880
AL539_RS04900	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_RS04920	PF11665	AL539_RS04920
AL539_RS04940	PF11665	AL539_RS04940
AL539_RS04960	PF13333	AL539_RS04960
AL539_RS04965	PF00665	Integrase core domain
AL539_RS04965	PF13276	AL539_RS04965
AL539_RS04970	PF01527	Transposase
AL539_RS04975	PF11665	AL539_RS04975
AL539_RS04980	PF00293	NUDIX domain
AL539_RS05005	PF13957	AL539_RS05005
AL539_RS05025	PF11665	AL539_RS05025
AL539_RS05050	PF11665	AL539_RS05050
AL539_RS05055	PF01965	DJ-1/PfpI family
AL539_RS05060	PF13847	Methyltransferase domain
AL539_RS05080	PF07653	Variant SH3 domain
AL539_RS05090	PF10387	Protein of unknown function (DUF2442)
AL539_RS05095	PF13711	AL539_RS05095
AL539_RS05100	PF11665	AL539_RS05100
AL539_RS05110	PF11665	AL539_RS05110
AL539_RS05115	PF11964	SpoIIAA-like
AL539_RS05130	PF01636	Phosphotransferase enzyme family
AL539_RS05145	PF11665	AL539_RS05145
AL539_RS05150	PF04221	RelB antitoxin
AL539_RS05155	PF05016	Plasmid stabilisation system protein
AL539_RS05160	PF06042	Bacterial protein of unknown function (DUF925)
AL539_RS05165	PF11665	AL539_RS05165
AL539_RS05180	PF11665	AL539_RS05180
AL539_RS05185	PF06189	AL539_RS05185
AL539_RS05210	PF11665	AL539_RS05210
AL539_RS05215	PF11665	AL539_RS05215
AL539_RS05230	PF11665	AL539_RS05230
AL539_RS05250	PF13737	AL539_RS05250
AL539_RS05260	PF11665	AL539_RS05260
AL539_RS05265	PF11665	AL539_RS05265
AL539_RS05275	PF11665	AL539_RS05275
AL539_RS05295	PF11665	AL539_RS05295
AL539_RS05315	PF11665	AL539_RS05315
AL539_RS05325	PF11665	AL539_RS05325
AL539_RS05335	PF11665	AL539_RS05335
AL539_RS05345	PF11665	AL539_RS05345
AL539_RS05365	PF11665	AL539_RS05365
AL539_RS05375	PF11665	AL539_RS05375
AL539_RS05390	PF11948	AL539_RS05390
AL539_RS05395	PF11665	AL539_RS05395
AL539_RS05405	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL539_RS05410	PF05016	Plasmid stabilisation system protein
AL539_RS05430	PF13302	Acetyltransferase (GNAT) domain
AL539_RS05445	PF05016	Plasmid stabilisation system protein
AL539_RS05450	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL539_RS05455	PF05016	Plasmid stabilisation system protein
AL539_RS05460	PF11665	AL539_RS05460
AL539_RS05470	PF13508	Acetyltransferase (GNAT) domain
AL539_RS05480	PF11665	AL539_RS05480
AL539_RS05495	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL539_RS05500	PF11665	AL539_RS05500
AL539_RS05510	PF11665	AL539_RS05510
AL539_RS05525	PF11665	AL539_RS05525
AL539_RS05535	PF04607	Region found in RelA / SpoT proteins
AL539_RS05540	PF00589	Phage integrase family
AL539_RS05540	PF13495	Phage integrase, N-terminal SAM-like domain
AL539_RS05545	PF11163	AL539_RS05545
AL539_RS05550	PF13023	HD domain
AL539_RS05555	PF13302	Acetyltransferase (GNAT) domain
AL539_RS05560	PF00158	Sigma-54 interaction domain
AL539_RS05560	PF00989	PAS fold
AL539_RS05565	PF05128	AL539_RS05565
AL539_RS05570	PF04317	AL539_RS05570
AL539_RS05580	PF05681	AL539_RS05580
AL539_RS05580	PF05683	Fumarase C-terminus
AL539_RS05590	PF00425	chorismate binding enzyme
AL539_RS05590	PF04715	Anthranilate synthase component I, N terminal region
AL539_RS05595	PF00072	Response regulator receiver domain
AL539_RS05595	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS05595	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS05600	PF07700	Heme NO binding
AL539_RS05605	PF00293	NUDIX domain
AL539_RS05610	PF03222	Tryptophan/tyrosine permease family
AL539_RS05615	PF03313	AL539_RS05615
AL539_RS05615	PF03315	Serine dehydratase beta chain
AL539_RS05620	PF00563	EAL domain
AL539_RS05625	PF00583	Acetyltransferase (GNAT) family
AL539_RS05630	PF01242	6-pyruvoyl tetrahydropterin synthase
AL539_RS05635	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS05640	PF00152	tRNA synthetases class II (D, K and N)
AL539_RS05640	PF01336	OB-fold nucleic acid binding domain
AL539_RS05650	PF00155	Aminotransferase class I and II
AL539_RS05650	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS05665	PF00155	Aminotransferase class I and II
AL539_RS05670	PF13505	Outer membrane protein beta-barrel domain
AL539_RS05675	PF00027	Cyclic nucleotide-binding domain
AL539_RS05675	PF00571	CBS domain
AL539_RS05675	PF03445	AL539_RS05675
AL539_RS05675	PF10335	AL539_RS05675
AL539_RS05680	PF00929	Exonuclease
AL539_RS05685	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS05685	PF00672	HAMP domain
AL539_RS05685	PF02743	Cache domain
AL539_RS05690	PF02028	BCCT family transporter
AL539_RS05695	PF01047	MarR family
AL539_RS05700	PF00072	Response regulator receiver domain
AL539_RS05700	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS05705	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS05705	PF07730	Histidine kinase
AL539_RS05705	PF17200	AL539_RS05705
AL539_RS05710	PF06808	AL539_RS05710
AL539_RS05715	PF04290	AL539_RS05715
AL539_RS05720	PF03480	Bacterial extracellular solute-binding protein, family 7
AL539_RS05730	PF11201	AL539_RS05730
AL539_RS05735	PF00753	Metallo-beta-lactamase superfamily
AL539_RS05740	PF05951	AL539_RS05740
AL539_RS05745	PF01471	Putative peptidoglycan binding domain
AL539_RS05745	PF03734	L,D-transpeptidase catalytic domain
AL539_RS05750	PF07433	AL539_RS05750
AL539_RS05755	PF09375	Imelysin
AL539_RS05760	PF06537	AL539_RS05760
AL539_RS05765	PF09375	Imelysin
AL539_RS05770	PF00925	GTP cyclohydrolase II
AL539_RS05780	PF03918	Cytochrome C biogenesis protein
AL539_RS05785	PF08534	Redoxin
AL539_RS05790	PF01578	AL539_RS05790
AL539_RS05790	PF16327	AL539_RS05790
AL539_RS05795	PF03916	AL539_RS05795
AL539_RS05800	PF12800	4Fe-4S binding domain
AL539_RS05800	PF13247	4Fe-4S dicluster domain
AL539_RS05805	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
AL539_RS05810	PF02335	Cytochrome c552
AL539_RS05820	PF07719	Tetratricopeptide repeat
AL539_RS05825	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL539_RS05825	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL539_RS05830	PF13489	Methyltransferase domain
AL539_RS05840	PF00317	Ribonucleotide reductase, all-alpha domain
AL539_RS05840	PF02867	Ribonucleotide reductase, barrel domain
AL539_RS05840	PF03477	ATP cone domain
AL539_RS05845	PF00268	Ribonucleotide reductase, small chain
AL539_RS05850	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS05855	PF00994	Probable molybdopterin binding domain
AL539_RS05860	PF13084	AL539_RS05860
AL539_RS05865	PF13740	ACT domain
AL539_RS05870	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL539_RS05875	PF03435	Saccharopine dehydrogenase
AL539_RS05875	PF16653	AL539_RS05875
AL539_RS05880	PF00202	Aminotransferase class-III
AL539_RS05880	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL539_RS05905	PF01066	CDP-alcohol phosphatidyltransferase
AL539_RS05910	PF01541	GIY-YIG catalytic domain
AL539_RS05910	PF02151	UvrB/uvrC motif
AL539_RS05910	PF08459	UvrC Helix-hairpin-helix N-terminal
AL539_RS05910	PF14520	Helix-hairpin-helix domain
AL539_RS05915	PF00072	Response regulator receiver domain
AL539_RS05915	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS05920	PF00136	DNA polymerase family B
AL539_RS05920	PF03104	DNA polymerase family B, exonuclease domain
AL539_RS05930	PF01132	Elongation factor P (EF-P) OB domain
AL539_RS05930	PF08207	Elongation factor P (EF-P) KOW-like domain
AL539_RS05930	PF09285	Elongation factor P, C-terminal
AL539_RS05935	PF04269	Protein of unknown function, DUF440
AL539_RS05940	PF00849	RNA pseudouridylate synthase
AL539_RS05940	PF01479	S4 domain
AL539_RS05945	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL539_RS05950	PF01300	Telomere recombination
AL539_RS05955	PF02811	PHP domain
AL539_RS05960	PF08056	AL539_RS05960
AL539_RS05965	PF00425	chorismate binding enzyme
AL539_RS05965	PF04715	Anthranilate synthase component I, N terminal region
AL539_RS05970	PF00117	Glutamine amidotransferase class-I
AL539_RS05975	PF00591	Glycosyl transferase family, a/b domain
AL539_RS05975	PF02885	Glycosyl transferase family, helical bundle domain
AL539_RS05980	PF00218	Indole-3-glycerol phosphate synthase
AL539_RS05980	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AL539_RS05985	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS05990	PF00290	Tryptophan synthase alpha chain
AL539_RS05995	PF00027	Cyclic nucleotide-binding domain
AL539_RS05995	PF13545	Crp-like helix-turn-helix domain
AL539_RS06000	PF00501	AMP-binding enzyme
AL539_RS06000	PF13193	AMP-binding enzyme C-terminal domain
AL539_RS06010	PF00375	Sodium:dicarboxylate symporter family
AL539_RS06015	PF17327	AL539_RS06015
AL539_RS06020	PF00072	Response regulator receiver domain
AL539_RS06020	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS06020	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS06030	PF04279	AL539_RS06030
AL539_RS06035	PF03061	Thioesterase superfamily
AL539_RS06040	PF03795	YCII-related domain
AL539_RS06045	PF16549	AL539_RS06045
AL539_RS06050	PF01717	Cobalamin-independent synthase, Catalytic domain
AL539_RS06050	PF08267	Cobalamin-independent synthase, N-terminal domain
AL539_RS06055	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS06055	PF03466	LysR substrate binding domain
AL539_RS06060	PF14056	AL539_RS06060
AL539_RS06070	PF00563	EAL domain
AL539_RS06070	PF00571	CBS domain
AL539_RS06070	PF00989	PAS fold
AL539_RS06075	PF04055	Radical SAM superfamily
AL539_RS06075	PF08497	AL539_RS06075
AL539_RS06075	PF11842	AL539_RS06075
AL539_RS06095	PF04138	AL539_RS06095
AL539_RS06100	PF02366	AL539_RS06100
AL539_RS06105	PF00535	Glycosyl transferase family 2
AL539_RS06110	PF00072	Response regulator receiver domain
AL539_RS06110	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS06115	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS06115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS06125	PF00857	Isochorismatase family
AL539_RS06130	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS06130	PF03466	LysR substrate binding domain
AL539_RS06135	PF13437	HlyD family secretion protein
AL539_RS06135	PF13533	Biotin-lipoyl like
AL539_RS06140	PF11168	AL539_RS06140
AL539_RS06140	PF13515	AL539_RS06140
AL539_RS06145	PF01717	Cobalamin-independent synthase, Catalytic domain
AL539_RS06150	PF08908	AL539_RS06150
AL539_RS06155	PF07968	Leukocidin/Hemolysin toxin family
AL539_RS06165	PF00005	ABC transporter
AL539_RS06170	PF02687	AL539_RS06170
AL539_RS06170	PF12704	MacB-like periplasmic core domain
AL539_RS06175	PF02687	AL539_RS06175
AL539_RS06175	PF12704	MacB-like periplasmic core domain
AL539_RS06180	PF02321	Outer membrane efflux protein
AL539_RS06185	PF16576	AL539_RS06185
AL539_RS06195	PF05257	CHAP domain
AL539_RS06205	PF00085	Thioredoxin
AL539_RS06210	PF02683	AL539_RS06210
AL539_RS06210	PF11412	Disulphide bond corrector protein DsbC
AL539_RS06210	PF13899	Thioredoxin-like
AL539_RS06220	PF00072	Response regulator receiver domain
AL539_RS06220	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS06225	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS06225	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS06225	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL539_RS06230	PF13247	4Fe-4S dicluster domain
AL539_RS06235	PF03916	AL539_RS06235
AL539_RS06240	PF00384	Molybdopterin oxidoreductase
AL539_RS06240	PF01568	Molydopterin dinucleotide binding domain
AL539_RS06245	PF00034	Cytochrome c
AL539_RS06250	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_RS06255	PF04403	AL539_RS06255
AL539_RS06260	PF02470	AL539_RS06260
AL539_RS06265	PF03886	Protein of unknown function (DUF330)
AL539_RS06280	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS06285	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL539_RS06290	PF13176	Tetratricopeptide repeat
AL539_RS06290	PF14559	Tetratricopeptide repeat
AL539_RS06295	PF06305	AL539_RS06295
AL539_RS06300	PF00216	Bacterial DNA-binding protein
AL539_RS06305	PF00575	S1 RNA binding domain
AL539_RS06310	PF02224	Cytidylate kinase
AL539_RS06315	PF01343	Peptidase family S49
AL539_RS06315	PF08496	AL539_RS06315
AL539_RS06320	PF00106	short chain dehydrogenase
AL539_RS06325	PF00154	recA bacterial DNA recombination protein
AL539_RS06330	PF00817	impB/mucB/samB family
AL539_RS06335	PF01336	OB-fold nucleic acid binding domain
AL539_RS06335	PF02811	PHP domain
AL539_RS06335	PF07733	Bacterial DNA polymerase III alpha subunit
AL539_RS06335	PF14579	Helix-hairpin-helix motif
AL539_RS06340	PF00072	Response regulator receiver domain
AL539_RS06340	PF01584	CheW-like domain
AL539_RS06345	PF00480	ROK family
AL539_RS06350	PF00224	Pyruvate kinase, barrel domain
AL539_RS06350	PF02887	Pyruvate kinase, alpha/beta domain
AL539_RS06355	PF01734	Patatin-like phospholipase
AL539_RS06365	PF13505	Outer membrane protein beta-barrel domain
AL539_RS06370	PF00209	Sodium:neurotransmitter symporter family
AL539_RS06385	PF00367	phosphotransferase system, EIIB
AL539_RS06385	PF02378	Phosphotransferase system, EIIC
AL539_RS06390	PF01026	TatD related DNase
AL539_RS06395	PF09115	DNA polymerase III, delta subunit, C terminal
AL539_RS06395	PF13177	DNA polymerase III, delta subunit
AL539_RS06400	PF02223	Thymidylate kinase
AL539_RS06405	PF02618	YceG-like family
AL539_RS06410	PF01063	Aminotransferase class IV
AL539_RS06415	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_RS06415	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_RS06420	PF00550	Phosphopantetheine attachment site
AL539_RS06425	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS06430	PF00698	Acyl transferase domain
AL539_RS06435	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL539_RS06435	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL539_RS06440	PF02504	Fatty acid synthesis protein
AL539_RS06445	PF01783	Ribosomal L32p protein family
AL539_RS06450	PF02620	AL539_RS06450
AL539_RS06455	PF02545	Maf-like protein
AL539_RS06460	PF00849	RNA pseudouridylate synthase
AL539_RS06460	PF01479	S4 domain
AL539_RS06470	PF00575	S1 RNA binding domain
AL539_RS06470	PF10150	Ribonuclease E/G family
AL539_RS06480	PF00916	AL539_RS06480
AL539_RS06480	PF01740	STAS domain
AL539_RS06485	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL539_RS06490	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AL539_RS06490	PF12557	Cob(I)alamin adenosyltransferase N terminal
AL539_RS06495	PF05170	AL539_RS06495
AL539_RS06500	PF00485	Phosphoribulokinase / Uridine kinase family
AL539_RS06505	PF10609	ParA/MinD ATPase like
AL539_RS06510	PF01588	Putative tRNA binding domain
AL539_RS06510	PF09334	tRNA synthetases class I (M)
AL539_RS06535	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS06535	PF07840	FadR C-terminal domain
AL539_RS06540	PF06450	AL539_RS06540
AL539_RS06545	PF02600	Disulfide bond formation protein DsbB
AL539_RS06550	PF02810	SEC-C motif
AL539_RS06550	PF03695	Uncharacterised protein family (UPF0149)
AL539_RS06555	PF01207	Dihydrouridine synthase (Dus)
AL539_RS06560	PF00990	GGDEF domain
AL539_RS06565	PF00128	Alpha amylase, catalytic domain
AL539_RS06565	PF02903	Alpha amylase, N-terminal ig-like domain
AL539_RS06570	PF00005	ABC transporter
AL539_RS06575	PF02653	AL539_RS06575
AL539_RS06580	PF04392	ABC transporter substrate binding protein
AL539_RS06585	PF04217	AL539_RS06585
AL539_RS06590	PF00871	Acetokinase family
AL539_RS06595	PF01515	Phosphate acetyl/butaryl transferase
AL539_RS06595	PF07085	DRTGG domain
AL539_RS06595	PF13500	AAA domain
AL539_RS06605	PF13409	Glutathione S-transferase, N-terminal domain
AL539_RS06605	PF13410	Glutathione S-transferase, C-terminal domain
AL539_RS06610	PF00005	ABC transporter
AL539_RS06610	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS06615	PF00005	ABC transporter
AL539_RS06615	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS06620	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS06620	PF12911	AL539_RS06620
AL539_RS06625	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS06630	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS06640	PF02391	MoaE protein
AL539_RS06645	PF02597	ThiS family
AL539_RS06650	PF01967	MoaC family
AL539_RS06655	PF00994	Probable molybdopterin binding domain
AL539_RS06660	PF04055	Radical SAM superfamily
AL539_RS06660	PF06463	Molybdenum Cofactor Synthesis C
AL539_RS06660	PF13353	4Fe-4S single cluster domain
AL539_RS06665	PF01933	Uncharacterised protein family UPF0052
AL539_RS06670	PF01627	Hpt domain
AL539_RS06675	PF00072	Response regulator receiver domain
AL539_RS06675	PF00158	Sigma-54 interaction domain
AL539_RS06675	PF02954	Bacterial regulatory protein, Fis family
AL539_RS06680	PF00271	Helicase conserved C-terminal domain
AL539_RS06680	PF02151	UvrB/uvrC motif
AL539_RS06680	PF04851	Type III restriction enzyme, res subunit
AL539_RS06680	PF12344	Ultra-violet resistance protein B
AL539_RS06690	PF01228	Glycine radical
AL539_RS06690	PF02901	Pyruvate formate lyase
AL539_RS06695	PF02508	AL539_RS06695
AL539_RS06700	PF04060	Putative Fe-S cluster
AL539_RS06700	PF14697	4Fe-4S dicluster domain
AL539_RS06705	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AL539_RS06705	PF10531	SLBB domain
AL539_RS06705	PF12838	4Fe-4S dicluster domain
AL539_RS06705	PF13375	RnfC Barrel sandwich hybrid domain
AL539_RS06710	PF03116	AL539_RS06710
AL539_RS06715	PF04205	FMN-binding domain
AL539_RS06720	PF02508	AL539_RS06720
AL539_RS06725	PF00633	Helix-hairpin-helix motif
AL539_RS06725	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_RS06725	PF10576	Iron-sulfur binding domain of endonuclease III
AL539_RS06730	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS06735	PF10952	AL539_RS06735
AL539_RS06740	PF00691	OmpA family
AL539_RS06750	PF00929	Exonuclease
AL539_RS06755	PF03553	AL539_RS06755
AL539_RS06755	PF13726	AL539_RS06755
AL539_RS06760	PF13743	Thioredoxin
AL539_RS06775	PF00462	Glutaredoxin
AL539_RS06780	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL539_RS06780	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL539_RS06785	PF11993	AL539_RS06785
AL539_RS06790	PF00106	short chain dehydrogenase
AL539_RS06795	PF00171	Aldehyde dehydrogenase family
AL539_RS06795	PF00465	Iron-containing alcohol dehydrogenase
AL539_RS06800	PF01914	AL539_RS06800
AL539_RS06805	PF00520	Ion transport protein
AL539_RS06810	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL539_RS06810	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL539_RS06815	PF03553	AL539_RS06815
AL539_RS06825	PF01627	Hpt domain
AL539_RS06830	PF04245	AL539_RS06830
AL539_RS06835	PF07208	Protein of unknown function (DUF1414)
AL539_RS06840	PF00884	Sulfatase
AL539_RS06840	PF11893	AL539_RS06840
AL539_RS06850	PF00850	Histone deacetylase domain
AL539_RS06855	PF00106	short chain dehydrogenase
AL539_RS06865	PF01131	DNA topoisomerase
AL539_RS06865	PF01751	Toprim domain
AL539_RS06870	PF00881	Nitroreductase family
AL539_RS06875	PF07690	Major Facilitator Superfamily
AL539_RS06880	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_RS06880	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS06885	PF01343	Peptidase family S49
AL539_RS06890	PF00710	Asparaginase
AL539_RS06895	PF07023	AL539_RS06895
AL539_RS06900	PF11207	AL539_RS06900
AL539_RS06905	PF01641	SelR domain
AL539_RS06910	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_RS06910	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_RS06915	PF01263	Aldose 1-epimerase
AL539_RS06920	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS06920	PF17201	AL539_RS06920
AL539_RS06925	PF13847	Methyltransferase domain
AL539_RS06930	PF04187	Protein of unknown function, DUF399
AL539_RS06945	PF00245	Alkaline phosphatase
AL539_RS06950	PF13467	Ribbon-helix-helix domain
AL539_RS06955	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS06960	PF03992	Antibiotic biosynthesis monooxygenase
AL539_RS06965	PF00924	Mechanosensitive ion channel
AL539_RS06970	PF03692	AL539_RS06970
AL539_RS06975	PF04226	AL539_RS06975
AL539_RS06980	PF03692	AL539_RS06980
AL539_RS06985	PF00230	Major intrinsic protein
AL539_RS06990	PF02132	RecR protein
AL539_RS06990	PF13662	Toprim domain
AL539_RS06995	PF02575	YbaB/EbfC DNA-binding family
AL539_RS07000	PF12168	AL539_RS07000
AL539_RS07000	PF12169	DNA polymerase III subunits gamma and tau domain III
AL539_RS07000	PF12170	DNA polymerase III tau subunit V interacting with alpha
AL539_RS07000	PF13177	DNA polymerase III, delta subunit
AL539_RS07005	PF00156	Phosphoribosyl transferase domain
AL539_RS07010	PF04304	AL539_RS07010
AL539_RS07020	PF00072	Response regulator receiver domain
AL539_RS07025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS07025	PF03466	LysR substrate binding domain
AL539_RS07030	PF00156	Phosphoribosyl transferase domain
AL539_RS07030	PF13522	Glutamine amidotransferase domain
AL539_RS07035	PF02674	AL539_RS07035
AL539_RS07040	PF05036	Sporulation related domain
AL539_RS07045	PF08245	Mur ligase middle domain
AL539_RS07050	PF01039	Carboxyl transferase domain
AL539_RS07060	PF01416	tRNA pseudouridine synthase
AL539_RS07070	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL539_RS07070	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL539_RS07075	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_RS07075	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_RS07075	PF11890	Domain of unknown function (DUF3410)
AL539_RS07085	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_RS07085	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_RS07090	PF01266	FAD dependent oxidoreductase
AL539_RS07090	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
AL539_RS07095	PF03358	NADPH-dependent FMN reductase
AL539_RS07105	PF08891	AL539_RS07105
AL539_RS07110	PF04315	AL539_RS07110
AL539_RS07120	PF03458	AL539_RS07120
AL539_RS07125	PF01264	Chorismate synthase
AL539_RS07130	PF05175	Methyltransferase small domain
AL539_RS07135	PF01713	Smr domain
AL539_RS07140	PF00300	Histidine phosphatase superfamily (branch 1)
AL539_RS07145	PF00675	Insulinase (Peptidase family M16)
AL539_RS07145	PF05193	Peptidase M16 inactive domain
AL539_RS07145	PF16187	AL539_RS07145
AL539_RS07155	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS07155	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL539_RS07155	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL539_RS07160	PF00108	Thiolase, N-terminal domain
AL539_RS07160	PF02803	Thiolase, C-terminal domain
AL539_RS07170	PF04542	Sigma-70 region 2
AL539_RS07170	PF08281	Sigma-70, region 4
AL539_RS07175	PF11859	AL539_RS07175
AL539_RS07180	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_RS07185	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_RS07190	PF00589	Phage integrase family
AL539_RS07210	PF06496	AL539_RS07210
AL539_RS07215	PF09370	TIM-barrel signal transduction protein
AL539_RS07220	PF06792	Uncharacterised protein family (UPF0261)
AL539_RS07225	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS07230	PF04333	AL539_RS07230
AL539_RS07235	PF14559	Tetratricopeptide repeat
AL539_RS07240	PF03918	Cytochrome C biogenesis protein
AL539_RS07245	PF08534	Redoxin
AL539_RS07250	PF01578	AL539_RS07250
AL539_RS07250	PF16327	AL539_RS07250
AL539_RS07255	PF03100	CcmE
AL539_RS07260	PF04995	AL539_RS07260
AL539_RS07265	PF01578	AL539_RS07265
AL539_RS07270	PF03379	AL539_RS07270
AL539_RS07275	PF00005	ABC transporter
AL539_RS07280	PF10975	AL539_RS07280
AL539_RS07285	PF01584	CheW-like domain
AL539_RS07290	PF01584	CheW-like domain
AL539_RS07295	PF13614	AAA domain
AL539_RS07300	PF00072	Response regulator receiver domain
AL539_RS07300	PF01339	CheB methylesterase
AL539_RS07305	PF01584	CheW-like domain
AL539_RS07305	PF01627	Hpt domain
AL539_RS07305	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS07305	PF02895	Signal transducing histidine kinase, homodimeric domain
AL539_RS07310	PF04344	Chemotaxis phosphatase, CheZ
AL539_RS07315	PF00072	Response regulator receiver domain
AL539_RS07320	PF04539	Sigma-70 region 3
AL539_RS07320	PF04542	Sigma-70 region 2
AL539_RS07320	PF04545	Sigma-70, region 4
AL539_RS07325	PF10609	ParA/MinD ATPase like
AL539_RS07330	PF00448	SRP54-type protein, GTPase domain
AL539_RS07335	PF00771	FHIPEP family
AL539_RS07340	PF01312	FlhB HrpN YscU SpaS Family
AL539_RS07345	PF01311	AL539_RS07345
AL539_RS07350	PF01313	AL539_RS07350
AL539_RS07355	PF00813	AL539_RS07355
AL539_RS07360	PF04347	AL539_RS07360
AL539_RS07365	PF01052	Surface presentation of antigens (SPOA)
AL539_RS07370	PF01052	Surface presentation of antigens (SPOA)
AL539_RS07370	PF02154	Flagellar motor switch protein FliM
AL539_RS07375	PF03748	AL539_RS07375
AL539_RS07380	PF02120	Flagellar hook-length control protein FliK
AL539_RS07385	PF07978	NIPSNAP
AL539_RS07390	PF02050	Flagellar FliJ protein
AL539_RS07395	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_RS07400	PF02108	AL539_RS07400
AL539_RS07405	PF01706	FliG C-terminal domain
AL539_RS07405	PF14841	FliG middle domain
AL539_RS07405	PF14842	FliG N-terminal domain
AL539_RS07410	PF01514	Secretory protein of YscJ/FliF family
AL539_RS07410	PF08345	AL539_RS07410
AL539_RS07415	PF02049	AL539_RS07415
AL539_RS07420	PF00072	Response regulator receiver domain
AL539_RS07420	PF00158	Sigma-54 interaction domain
AL539_RS07420	PF02954	Bacterial regulatory protein, Fis family
AL539_RS07425	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS07425	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS07425	PF13188	PAS domain
AL539_RS07430	PF00158	Sigma-54 interaction domain
AL539_RS07430	PF02954	Bacterial regulatory protein, Fis family
AL539_RS07430	PF06490	AL539_RS07430
AL539_RS07435	PF02561	Flagellar protein FliS
AL539_RS07445	PF02465	AL539_RS07445
AL539_RS07445	PF07195	AL539_RS07445
AL539_RS07445	PF07196	Flagellin hook IN motif
AL539_RS07450	PF03646	FlaG protein
AL539_RS07455	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS07455	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS07455	PF07196	Flagellin hook IN motif
AL539_RS07460	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS07460	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS07460	PF07196	Flagellin hook IN motif
AL539_RS07470	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS07470	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS07470	PF07196	Flagellin hook IN motif
AL539_RS07475	PF04261	Dyp-type peroxidase family
AL539_RS07480	PF11143	AL539_RS07480
AL539_RS07485	PF11169	AL539_RS07485
AL539_RS07490	PF13698	AL539_RS07490
AL539_RS07495	PF09904	Winged helix-turn helix
AL539_RS07500	PF03960	ArsC family
AL539_RS07505	PF01546	Peptidase family M20/M25/M40
AL539_RS07505	PF07687	Peptidase dimerisation domain
AL539_RS07510	PF02557	D-alanyl-D-alanine carboxypeptidase
AL539_RS07515	PF11446	AL539_RS07515
AL539_RS07520	PF06804	NlpB/DapX lipoprotein
AL539_RS07525	PF00701	Dihydrodipicolinate synthetase family
AL539_RS07530	PF13740	ACT domain
AL539_RS07535	PF00578	AhpC/TSA family
AL539_RS07540	PF01594	AL539_RS07540
AL539_RS07545	PF01206	Sulfurtransferase TusA
AL539_RS07550	PF01435	Peptidase family M48
AL539_RS07550	PF14559	Tetratricopeptide repeat
AL539_RS07555	PF03960	ArsC family
AL539_RS07560	PF03358	NADPH-dependent FMN reductase
AL539_RS07565	PF09842	AL539_RS07565
AL539_RS07570	PF09839	AL539_RS07570
AL539_RS07575	PF00860	Permease family
AL539_RS07580	PF14681	Uracil phosphoribosyltransferase
AL539_RS07585	PF00586	AIR synthase related protein, N-terminal domain
AL539_RS07585	PF02769	AIR synthase related protein, C-terminal domain
AL539_RS07590	PF00551	Formyl transferase
AL539_RS07595	PF13230	Glutamine amidotransferases class-II
AL539_RS07600	PF13580	SIS domain
AL539_RS07605	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_RS07605	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_RS07605	PF09317	AL539_RS07605
AL539_RS07610	PF00916	AL539_RS07610
AL539_RS07610	PF01740	STAS domain
AL539_RS07615	PF13508	Acetyltransferase (GNAT) domain
AL539_RS07620	PF07087	AL539_RS07620
AL539_RS07635	PF00929	Exonuclease
AL539_RS07640	PF00075	RNase H
AL539_RS07645	PF08241	Methyltransferase domain
AL539_RS07650	PF16123	AL539_RS07650
AL539_RS07655	PF01464	Transglycosylase SLT domain
AL539_RS07655	PF01476	LysM domain
AL539_RS07660	PF06930	AL539_RS07660
AL539_RS07665	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS07670	PF00543	Nitrogen regulatory protein P-II
AL539_RS07675	PF00034	Cytochrome c
AL539_RS07680	PF01171	PP-loop family
AL539_RS07680	PF09179	TilS substrate binding domain
AL539_RS07680	PF11734	TilS substrate C-terminal domain
AL539_RS07685	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AL539_RS07690	PF01336	OB-fold nucleic acid binding domain
AL539_RS07690	PF02811	PHP domain
AL539_RS07690	PF07733	Bacterial DNA polymerase III alpha subunit
AL539_RS07690	PF14579	Helix-hairpin-helix motif
AL539_RS07695	PF01351	Ribonuclease HII
AL539_RS07700	PF02684	AL539_RS07700
AL539_RS07705	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS07705	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AL539_RS07710	PF07977	FabA-like domain
AL539_RS07715	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS07715	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AL539_RS07715	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_RS07720	PF03938	Outer membrane protein (OmpH-like)
AL539_RS07725	PF01103	Surface antigen
AL539_RS07725	PF07244	Surface antigen variable number repeat
AL539_RS07730	PF02163	Peptidase family M50
AL539_RS07730	PF13180	PDZ domain
AL539_RS07735	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
AL539_RS07735	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
AL539_RS07735	PF13288	DXP reductoisomerase C-terminal domain
AL539_RS07740	PF01148	Cytidylyltransferase family
AL539_RS07745	PF01255	Putative undecaprenyl diphosphate synthase
AL539_RS07750	PF01765	Ribosome recycling factor
AL539_RS07755	PF00696	Amino acid kinase family
AL539_RS07760	PF00889	Elongation factor TS
AL539_RS07765	PF00318	Ribosomal protein S2
AL539_RS07770	PF00557	Metallopeptidase family M24
AL539_RS07775	PF01842	ACT domain
AL539_RS07775	PF01909	Nucleotidyltransferase domain
AL539_RS07775	PF01966	HD domain
AL539_RS07775	PF08335	GlnD PII-uridylyltransferase
AL539_RS07780	PF11944	AL539_RS07780
AL539_RS07785	PF00849	RNA pseudouridylate synthase
AL539_RS07790	PF04287	tRNA pseudouridine synthase C
AL539_RS07795	PF12069	AL539_RS07795
AL539_RS07800	PF11743	AL539_RS07800
AL539_RS07805	PF13302	Acetyltransferase (GNAT) domain
AL539_RS07820	PF02639	AL539_RS07820
AL539_RS07825	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL539_RS07825	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL539_RS07830	PF01370	NAD dependent epimerase/dehydratase family
AL539_RS07835	PF00753	Metallo-beta-lactamase superfamily
AL539_RS07845	PF02655	ATP-grasp domain
AL539_RS07855	PF03806	AL539_RS07855
AL539_RS07860	PF00444	Ribosomal protein L36
AL539_RS07865	PF01197	Ribosomal protein L31
AL539_RS07870	PF01980	Uncharacterised protein family UPF0066
AL539_RS07875	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL539_RS07875	PF03129	Anticodon binding domain
AL539_RS07875	PF04073	Aminoacyl-tRNA editing domain
AL539_RS07880	PF04391	AL539_RS07880
AL539_RS07885	PF06786	AL539_RS07885
AL539_RS07890	PF14056	AL539_RS07890
AL539_RS07895	PF00209	Sodium:neurotransmitter symporter family
AL539_RS07900	PF00704	Glycosyl hydrolases family 18
AL539_RS07905	PF11101	AL539_RS07905
AL539_RS07910	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_RS07915	PF00270	DEAD/DEAH box helicase
AL539_RS07915	PF00271	Helicase conserved C-terminal domain
AL539_RS07915	PF16124	AL539_RS07915
AL539_RS07920	PF00817	impB/mucB/samB family
AL539_RS07920	PF11799	impB/mucB/samB family C-terminal domain
AL539_RS07925	PF10982	Protein of unknown function (DUF2789)
AL539_RS07930	PF00072	Response regulator receiver domain
AL539_RS07930	PF00990	GGDEF domain
AL539_RS07935	PF04400	AL539_RS07935
AL539_RS07940	PF02424	ApbE family
AL539_RS07945	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS07945	PF00175	Oxidoreductase NAD-binding domain
AL539_RS07945	PF00970	Oxidoreductase FAD-binding domain
AL539_RS07950	PF02508	AL539_RS07950
AL539_RS07955	PF02508	AL539_RS07955
AL539_RS07960	PF04205	FMN-binding domain
AL539_RS07965	PF03116	AL539_RS07965
AL539_RS07970	PF05896	AL539_RS07970
AL539_RS07970	PF11973	AL539_RS07970
AL539_RS07975	PF01722	BolA-like protein
AL539_RS07980	PF05175	Methyltransferase small domain
AL539_RS07980	PF08468	Methyltransferase small domain N-terminal
AL539_RS07985	PF03923	AL539_RS07985
AL539_RS07990	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL539_RS07995	PF07690	Major Facilitator Superfamily
AL539_RS08000	PF12973	ChrR Cupin-like domain
AL539_RS08005	PF04542	Sigma-70 region 2
AL539_RS08005	PF04545	Sigma-70, region 4
AL539_RS08010	PF14344	AL539_RS08010
AL539_RS08015	PF02190	ATP-dependent protease La (LON) domain
AL539_RS08025	PF03502	Nucleoside-specific channel-forming protein, Tsx
AL539_RS08030	PF02558	Ketopantoate reductase PanE/ApbA
AL539_RS08030	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AL539_RS08035	PF01965	DJ-1/PfpI family
AL539_RS08040	PF00266	Aminotransferase class-V
AL539_RS08045	PF00990	GGDEF domain
AL539_RS08050	PF02657	Fe-S metabolism associated domain
AL539_RS08055	PF00899	ThiF family
AL539_RS08060	PF03562	MltA specific insert domain
AL539_RS08060	PF06725	3D domain
AL539_RS08070	PF11012	AL539_RS08070
AL539_RS08075	PF00583	Acetyltransferase (GNAT) family
AL539_RS08075	PF00696	Amino acid kinase family
AL539_RS08095	PF13538	UvrD-like helicase C-terminal domain
AL539_RS08095	PF13604	AAA domain
AL539_RS08100	PF00580	UvrD/REP helicase N-terminal domain
AL539_RS08100	PF12705	PD-(D/E)XK nuclease superfamily
AL539_RS08100	PF13361	UvrD-like helicase C-terminal domain
AL539_RS08105	PF04257	Exodeoxyribonuclease V, gamma subunit
AL539_RS08110	PF00884	Sulfatase
AL539_RS08110	PF11893	AL539_RS08110
AL539_RS08115	PF03595	Voltage-dependent anion channel
AL539_RS08120	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS08120	PF03466	LysR substrate binding domain
AL539_RS08125	PF07130	YebG protein
AL539_RS08130	PF01592	NifU-like N terminal domain
AL539_RS08135	PF14057	AL539_RS08135
AL539_RS08140	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_RS08140	PF14789	Tetrahydrodipicolinate N-succinyltransferase middle
AL539_RS08145	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL539_RS08150	PF07690	Major Facilitator Superfamily
AL539_RS08160	PF00230	Major intrinsic protein
AL539_RS08165	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL539_RS08165	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL539_RS08170	PF00455	AL539_RS08170
AL539_RS08170	PF08220	DeoR-like helix-turn-helix domain
AL539_RS08175	PF01266	FAD dependent oxidoreductase
AL539_RS08175	PF16901	AL539_RS08175
AL539_RS08180	PF01544	CorA-like Mg2+ transporter protein
AL539_RS08185	PF05940	AL539_RS08185
AL539_RS08190	PF06094	AIG2-like family
AL539_RS08195	PF13505	Outer membrane protein beta-barrel domain
AL539_RS08200	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS08200	PF13377	Periplasmic binding protein-like domain
AL539_RS08205	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS08205	PF03466	LysR substrate binding domain
AL539_RS08210	PF02417	AL539_RS08210
AL539_RS08215	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS08230	PF03412	Peptidase C39 family
AL539_RS08240	PF13557	AL539_RS08240
AL539_RS08245	PF00501	AMP-binding enzyme
AL539_RS08250	PF06568	AL539_RS08250
AL539_RS08255	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS08255	PF03466	LysR substrate binding domain
AL539_RS08260	PF00009	Elongation factor Tu GTP binding domain
AL539_RS08260	PF00679	Elongation factor G C-terminus
AL539_RS08260	PF03144	Elongation factor Tu domain 2
AL539_RS08260	PF03764	Elongation factor G, domain IV
AL539_RS08260	PF14492	Elongation Factor G, domain II
AL539_RS08265	PF13481	AAA domain
AL539_RS08265	PF13541	Subunit ChlI of Mg-chelatase
AL539_RS08270	PF07238	PilZ domain
AL539_RS08275	PF00702	haloacid dehalogenase-like hydrolase
AL539_RS08280	PF10144	AL539_RS08280
AL539_RS08285	PF01048	Phosphorylase superfamily
AL539_RS08290	PF01676	Metalloenzyme superfamily
AL539_RS08295	PF00591	Glycosyl transferase family, a/b domain
AL539_RS08295	PF02885	Glycosyl transferase family, helical bundle domain
AL539_RS08295	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AL539_RS08300	PF01791	DeoC/LacD family aldolase
AL539_RS08305	PF01773	Na+ dependent nucleoside transporter N-terminus
AL539_RS08305	PF07662	Na+ dependent nucleoside transporter C-terminus
AL539_RS08305	PF07670	Nucleoside recognition
AL539_RS08310	PF01026	TatD related DNase
AL539_RS08315	PF17320	AL539_RS08315
AL539_RS08320	PF00009	Elongation factor Tu GTP binding domain
AL539_RS08320	PF03144	Elongation factor Tu domain 2
AL539_RS08320	PF16658	AL539_RS08320
AL539_RS08325	PF00583	Acetyltransferase (GNAT) family
AL539_RS08330	PF03603	DNA polymerase III psi subunit
AL539_RS08340	PF13527	Acetyltransferase (GNAT) domain
AL539_RS08345	PF02036	SCP-2 sterol transfer family
AL539_RS08355	PF00563	EAL domain
AL539_RS08355	PF00990	GGDEF domain
AL539_RS08355	PF08448	PAS fold
AL539_RS08355	PF13188	PAS domain
AL539_RS08360	PF01136	AL539_RS08360
AL539_RS08365	PF01136	AL539_RS08365
AL539_RS08370	PF01554	MatE
AL539_RS08375	PF01047	MarR family
AL539_RS08385	PF00013	KH domain
AL539_RS08385	PF00575	S1 RNA binding domain
AL539_RS08385	PF01138	3' exoribonuclease family, domain 1
AL539_RS08385	PF03725	3' exoribonuclease family, domain 2
AL539_RS08385	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AL539_RS08390	PF00312	Ribosomal protein S15
AL539_RS08395	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AL539_RS08395	PF09157	Pseudouridine synthase II TruB, C-terminal
AL539_RS08395	PF16198	AL539_RS08395
AL539_RS08400	PF02033	Ribosome-binding factor A
AL539_RS08405	PF00009	Elongation factor Tu GTP binding domain
AL539_RS08405	PF03144	Elongation factor Tu domain 2
AL539_RS08405	PF04760	Translation initiation factor IF-2, N-terminal region
AL539_RS08405	PF08364	AL539_RS08405
AL539_RS08405	PF11987	Translation-initiation factor 2
AL539_RS08410	PF08529	NusA N-terminal domain
AL539_RS08410	PF13184	NusA-like KH domain
AL539_RS08410	PF14520	Helix-hairpin-helix domain
AL539_RS08415	PF02576	Uncharacterised BCR, YhbC family COG0779
AL539_RS08415	PF17384	AL539_RS08415
AL539_RS08430	PF03840	Preprotein translocase SecG subunit
AL539_RS08440	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_RS08440	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_RS08440	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_RS08440	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_RS08445	PF00809	Pterin binding enzyme
AL539_RS08450	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS08450	PF01434	Peptidase family M41
AL539_RS08450	PF06480	FtsH Extracellular
AL539_RS08455	PF01728	FtsJ-like methyltransferase
AL539_RS08460	PF01985	CRS1 / YhbY (CRM) domain
AL539_RS08465	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_RS08465	PF03449	Transcription elongation factor, N-terminal
AL539_RS08470	PF13609	Gram-negative porin
AL539_RS08475	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
AL539_RS08480	PF01769	Divalent cation transporter
AL539_RS08485	PF00579	tRNA synthetases class I (W and Y)
AL539_RS08485	PF01479	S4 domain
AL539_RS08490	PF01551	Peptidase family M23
AL539_RS08490	PF08525	AL539_RS08490
AL539_RS08495	PF00873	AcrB/AcrD/AcrF family
AL539_RS08500	PF16576	AL539_RS08500
AL539_RS08505	PF01521	Iron-sulphur cluster biosynthesis
AL539_RS08510	PF00202	Aminotransferase class-III
AL539_RS08515	PF01594	AL539_RS08515
AL539_RS08520	PF05175	Methyltransferase small domain
AL539_RS08520	PF08468	Methyltransferase small domain N-terminal
AL539_RS08525	PF00072	Response regulator receiver domain
AL539_RS08525	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS08525	PF00672	HAMP domain
AL539_RS08525	PF00989	PAS fold
AL539_RS08525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS08530	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS08535	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS08540	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS08545	PF00005	ABC transporter
AL539_RS08545	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS08550	PF00005	ABC transporter
AL539_RS08550	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS08555	PF00759	Glycosyl hydrolase family 9
AL539_RS08555	PF02927	N-terminal ig-like domain of cellulase
AL539_RS08560	PF01869	BadF/BadG/BcrA/BcrD ATPase family
AL539_RS08565	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL539_RS08565	PF02838	Glycosyl hydrolase family 20, domain 2
AL539_RS08570	PF06165	Glycosyltransferase family 36
AL539_RS08570	PF17167	AL539_RS08570
AL539_RS08575	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_RS08575	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_RS08575	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_RS08575	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_RS08580	PF00005	ABC transporter
AL539_RS08580	PF08402	TOBE domain
AL539_RS08585	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS08590	PF13343	Bacterial extracellular solute-binding protein
AL539_RS08595	PF00909	Ammonium Transporter Family
AL539_RS08600	PF00543	Nitrogen regulatory protein P-II
AL539_RS08605	PF06062	AL539_RS08605
AL539_RS08610	PF00330	Aconitase family (aconitate hydratase)
AL539_RS08610	PF06434	Aconitate hydratase 2 N-terminus
AL539_RS08610	PF11791	Aconitate B N-terminal domain
AL539_RS08615	PF01734	Patatin-like phospholipase
AL539_RS08615	PF07244	Surface antigen variable number repeat
AL539_RS08620	PF00905	Penicillin binding protein transpeptidase domain
AL539_RS08620	PF00912	Transglycosylase
AL539_RS08620	PF14814	Bifunctional transglycosylase second domain
AL539_RS08625	PF00270	DEAD/DEAH box helicase
AL539_RS08625	PF00271	Helicase conserved C-terminal domain
AL539_RS08625	PF04408	Helicase associated domain (HA2)
AL539_RS08625	PF08482	AL539_RS08625
AL539_RS08630	PF03749	Sugar fermentation stimulation protein
AL539_RS08635	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL539_RS08640	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL539_RS08645	PF01743	Poly A polymerase head domain
AL539_RS08645	PF12626	Polymerase A arginine-rich C-terminus
AL539_RS08645	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL539_RS08650	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL539_RS08655	PF02548	Ketopantoate hydroxymethyltransferase
AL539_RS08660	PF02569	Pantoate-beta-alanine ligase
AL539_RS08665	PF03279	AL539_RS08665
AL539_RS08675	PF01061	AL539_RS08675
AL539_RS08680	PF00005	ABC transporter
AL539_RS08685	PF00916	AL539_RS08685
AL539_RS08685	PF01740	STAS domain
AL539_RS08690	PF00484	Carbonic anhydrase
AL539_RS08695	PF00156	Phosphoribosyl transferase domain
AL539_RS08700	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS08705	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_RS08705	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS08710	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL539_RS08710	PF00364	Biotin-requiring enzyme
AL539_RS08710	PF02817	e3 binding domain
AL539_RS08715	PF00456	Transketolase, thiamine diphosphate binding domain
AL539_RS08720	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS08720	PF07729	FCD domain
AL539_RS08725	PF01510	N-acetylmuramoyl-L-alanine amidase
AL539_RS08730	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AL539_RS08730	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AL539_RS08735	PF00114	Pilin (bacterial filament)
AL539_RS08735	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS08740	PF00437	Type II/IV secretion system protein
AL539_RS08740	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AL539_RS08745	PF00482	Type II secretion system (T2SS), protein F
AL539_RS08750	PF01478	Type IV leader peptidase family
AL539_RS08750	PF06750	AL539_RS08750
AL539_RS08755	PF01121	Dephospho-CoA kinase
AL539_RS08760	PF07072	Protein of unknown function (DUF1342)
AL539_RS08765	PF03884	Domain of unknown function (DUF329)
AL539_RS08770	PF01245	Ribosomal protein L19
AL539_RS08775	PF01746	tRNA (Guanine-1)-methyltransferase
AL539_RS08780	PF01782	RimM N-terminal domain
AL539_RS08780	PF05239	PRC-barrel domain
AL539_RS08785	PF00886	Ribosomal protein S16
AL539_RS08790	PF00448	SRP54-type protein, GTPase domain
AL539_RS08790	PF02881	SRP54-type protein, helical bundle domain
AL539_RS08790	PF02978	Signal peptide binding domain
AL539_RS08795	PF01578	AL539_RS08795
AL539_RS08800	PF00571	CBS domain
AL539_RS08800	PF01595	AL539_RS08800
AL539_RS08800	PF03471	Transporter associated domain
AL539_RS08805	PF02664	S-Ribosylhomocysteinase (LuxS)
AL539_RS08815	PF04262	Glutamate-cysteine ligase
AL539_RS08820	PF00675	Insulinase (Peptidase family M16)
AL539_RS08820	PF05193	Peptidase M16 inactive domain
AL539_RS08825	PF09335	AL539_RS08825
AL539_RS08830	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS08830	PF13602	Zinc-binding dehydrogenase
AL539_RS08835	PF03977	AL539_RS08835
AL539_RS08840	PF00364	Biotin-requiring enzyme
AL539_RS08840	PF00682	HMGL-like
AL539_RS08840	PF02436	Conserved carboxylase domain
AL539_RS08845	PF04277	AL539_RS08845
AL539_RS08900	PF02599	Global regulator protein family
AL539_RS08905	PF00696	Amino acid kinase family
AL539_RS08910	PF01411	tRNA synthetases class II (A)
AL539_RS08910	PF02272	DHHA1 domain
AL539_RS08910	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL539_RS08915	PF02631	RecX family
AL539_RS08920	PF00154	recA bacterial DNA recombination protein
AL539_RS08925	PF02464	Competence-damaged protein
AL539_RS08930	PF00488	MutS domain V
AL539_RS08930	PF01624	MutS domain I
AL539_RS08930	PF05188	MutS domain II
AL539_RS08930	PF05190	MutS family domain IV
AL539_RS08930	PF05192	MutS domain III
AL539_RS08935	PF00140	Sigma-70 factor, region 1
AL539_RS08935	PF04539	Sigma-70 region 3
AL539_RS08935	PF04542	Sigma-70 region 2
AL539_RS08935	PF04545	Sigma-70, region 4
AL539_RS08940	PF01476	LysM domain
AL539_RS08940	PF01551	Peptidase family M23
AL539_RS08945	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AL539_RS08950	PF01975	Survival protein SurE
AL539_RS08955	PF01142	tRNA pseudouridine synthase D (TruD)
AL539_RS08960	PF02542	YgbB family
AL539_RS08965	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
AL539_RS08970	PF04977	Septum formation initiator
AL539_RS08975	PF00113	Enolase, C-terminal TIM barrel domain
AL539_RS08975	PF03952	Enolase, N-terminal domain
AL539_RS08980	PF00117	Glutamine amidotransferase class-I
AL539_RS08980	PF06418	CTP synthase N-terminus
AL539_RS08985	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL539_RS08990	PF02824	TGS domain
AL539_RS08990	PF04607	Region found in RelA / SpoT proteins
AL539_RS08990	PF13291	ACT domain
AL539_RS08990	PF13328	HD domain
AL539_RS09000	PF01938	TRAM domain
AL539_RS09000	PF05958	tRNA (Uracil-5-)-methyltransferase
AL539_RS09010	PF00072	Response regulator receiver domain
AL539_RS09010	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS09010	PF01627	Hpt domain
AL539_RS09010	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS09010	PF09984	AL539_RS09010
AL539_RS09015	PF01648	4'-phosphopantetheinyl transferase superfamily
AL539_RS09020	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
AL539_RS09025	PF02565	Recombination protein O C terminal
AL539_RS09025	PF11967	Recombination protein O N terminal
AL539_RS09030	PF01926	50S ribosome-binding GTPase
AL539_RS09030	PF07650	KH domain
AL539_RS09035	PF00035	Double-stranded RNA binding motif
AL539_RS09035	PF14622	Ribonuclease-III-like
AL539_RS09040	PF00717	Peptidase S24-like
AL539_RS09040	PF10502	Signal peptidase, peptidase S26
AL539_RS09045	PF00009	Elongation factor Tu GTP binding domain
AL539_RS09045	PF00679	Elongation factor G C-terminus
AL539_RS09045	PF03144	Elongation factor Tu domain 2
AL539_RS09045	PF06421	GTP-binding protein LepA C-terminus
AL539_RS09050	PF04246	AL539_RS09050
AL539_RS09055	PF03888	MucB/RseB family
AL539_RS09055	PF17188	AL539_RS09055
AL539_RS09060	PF03872	Anti sigma-E protein RseA, N-terminal domain
AL539_RS09060	PF03873	Anti sigma-E protein RseA, C-terminal domain
AL539_RS09065	PF04542	Sigma-70 region 2
AL539_RS09065	PF08281	Sigma-70, region 4
AL539_RS09075	PF00890	FAD binding domain
AL539_RS09075	PF02910	Fumarate reductase flavoprotein C-term
AL539_RS09085	PF03937	Flavinator of succinate dehydrogenase
AL539_RS09090	PF01571	Aminomethyltransferase folate-binding domain
AL539_RS09095	PF04073	Aminoacyl-tRNA editing domain
AL539_RS09100	PF06526	Protein of unknown function (DUF1107)
AL539_RS09105	PF01494	FAD binding domain
AL539_RS09110	PF01494	FAD binding domain
AL539_RS09115	PF03695	Uncharacterised protein family (UPF0149)
AL539_RS09125	PF05164	Cell division protein ZapA
AL539_RS09135	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AL539_RS09140	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AL539_RS09145	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_RS09145	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_RS09150	PF04402	Protein of unknown function (DUF541)
AL539_RS09155	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS09155	PF03466	LysR substrate binding domain
AL539_RS09160	PF01810	AL539_RS09160
AL539_RS09165	PF04073	Aminoacyl-tRNA editing domain
AL539_RS09170	PF00924	Mechanosensitive ion channel
AL539_RS09170	PF05552	Conserved TM helix
AL539_RS09175	PF01116	Fructose-bisphosphate aldolase class-II
AL539_RS09180	PF00162	Phosphoglycerate kinase
AL539_RS09185	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_RS09185	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_RS09190	PF00593	TonB dependent receptor
AL539_RS09190	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS09195	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS09195	PF03466	LysR substrate binding domain
AL539_RS09200	PF00456	Transketolase, thiamine diphosphate binding domain
AL539_RS09200	PF02779	Transketolase, pyrimidine binding domain
AL539_RS09200	PF02780	Transketolase, C-terminal domain
AL539_RS09210	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AL539_RS09210	PF02772	S-adenosylmethionine synthetase, central domain
AL539_RS09210	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AL539_RS09215	PF09955	AL539_RS09215
AL539_RS09220	PF10263	AL539_RS09220
AL539_RS09220	PF17283	AL539_RS09220
AL539_RS09225	PF04231	Endonuclease I
AL539_RS09230	PF04452	RNA methyltransferase
AL539_RS09235	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AL539_RS09235	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AL539_RS09240	PF02622	Uncharacterized ACR, COG1678
AL539_RS09245	PF03652	Uncharacterised protein family (UPF0081)
AL539_RS09250	PF00437	Type II/IV secretion system protein
AL539_RS09255	PF00437	Type II/IV secretion system protein
AL539_RS09260	PF01168	Alanine racemase, N-terminal domain
AL539_RS09265	PF03807	NADP oxidoreductase coenzyme F420-dependent
AL539_RS09265	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AL539_RS09270	PF02325	AL539_RS09270
AL539_RS09275	PF02594	Uncharacterised ACR, YggU family COG1872
AL539_RS09280	PF14467	Domain of unknown function (DUF4426)
AL539_RS09285	PF01725	Ham1 family
AL539_RS09290	PF04055	Radical SAM superfamily
AL539_RS09290	PF06969	HemN C-terminal domain
AL539_RS09295	PF04960	Glutaminase
AL539_RS09300	PF01170	Putative RNA methylase family UPF0020
AL539_RS09305	PF02390	Putative methyltransferase
AL539_RS09310	PF00633	Helix-hairpin-helix motif
AL539_RS09310	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_RS09310	PF14815	NUDIX domain
AL539_RS09320	PF09952	AL539_RS09320
AL539_RS09330	PF00753	Metallo-beta-lactamase superfamily
AL539_RS09330	PF14863	Alkyl sulfatase dimerisation
AL539_RS09330	PF14864	Alkyl sulfatase C-terminal
AL539_RS09340	PF01425	Amidase
AL539_RS09345	PF13599	Pentapeptide repeats (9 copies)
AL539_RS09350	PF13245	Part of AAA domain
AL539_RS09355	PF13175	AAA ATPase domain
AL539_RS09385	PF11665	AL539_RS09385
AL539_RS09395	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS09400	PF11665	AL539_RS09400
AL539_RS09410	PF13673	Acetyltransferase (GNAT) domain
AL539_RS09425	PF13289	AL539_RS09425
AL539_RS09435	PF00589	Phage integrase family
AL539_RS09445	PF00589	Phage integrase family
AL539_RS09455	PF12476	AL539_RS09455
AL539_RS09455	PF13304	AAA domain
AL539_RS09460	PF03235	AL539_RS09460
AL539_RS09465	PF00633	Helix-hairpin-helix motif
AL539_RS09465	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_RS09465	PF14815	NUDIX domain
AL539_RS09475	PF09952	AL539_RS09475
AL539_RS09485	PF00753	Metallo-beta-lactamase superfamily
AL539_RS09485	PF14863	Alkyl sulfatase dimerisation
AL539_RS09485	PF14864	Alkyl sulfatase C-terminal
AL539_RS09495	PF01425	Amidase
AL539_RS09500	PF13599	Pentapeptide repeats (9 copies)
AL539_RS09530	PF11665	AL539_RS09530
AL539_RS09545	PF11665	AL539_RS09545
AL539_RS09550	PF13673	Acetyltransferase (GNAT) domain
AL539_RS09570	PF13289	AL539_RS09570
AL539_RS09580	PF00589	Phage integrase family
AL539_RS09590	PF00589	Phage integrase family
AL539_RS09600	PF12476	AL539_RS09600
AL539_RS09600	PF13304	AAA domain
AL539_RS09605	PF03235	AL539_RS09605
AL539_RS09615	PF04362	Bacterial Fe(2+) trafficking
AL539_RS09620	PF01464	Transglycosylase SLT domain
AL539_RS09620	PF11873	Domain of unknown function (DUF3393)
AL539_RS09660	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS09660	PF17200	AL539_RS09660
AL539_RS09695	PF00171	Aldehyde dehydrogenase family
AL539_RS09740	PF01966	HD domain
AL539_RS09740	PF11871	AL539_RS09740
AL539_RS09745	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS09745	PF13377	Periplasmic binding protein-like domain
AL539_RS09750	PF04794	YdjC-like protein
AL539_RS09755	PF02056	Family 4 glycosyl hydrolase
AL539_RS09755	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL539_RS09760	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AL539_RS09765	PF02378	Phosphotransferase system, EIIC
AL539_RS09770	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS09775	PF01522	Polysaccharide deacetylase
AL539_RS09785	PF00106	short chain dehydrogenase
AL539_RS09790	PF10011	Predicted membrane protein (DUF2254)
AL539_RS09795	PF06271	AL539_RS09795
AL539_RS09800	PF03739	AL539_RS09800
AL539_RS09805	PF03739	AL539_RS09805
AL539_RS09810	PF00883	Cytosol aminopeptidase family, catalytic domain
AL539_RS09810	PF02789	Cytosol aminopeptidase family, N-terminal domain
AL539_RS09815	PF04364	DNA polymerase III chi subunit, HolC
AL539_RS09820	PF00133	tRNA synthetases class I (I, L, M and V)
AL539_RS09820	PF08264	Anticodon-binding domain of tRNA
AL539_RS09820	PF10458	Valyl tRNA synthetase tRNA binding arm
AL539_RS09825	PF09834	AL539_RS09825
AL539_RS09830	PF00583	Acetyltransferase (GNAT) family
AL539_RS09830	PF12802	MarR family
AL539_RS09840	PF06877	Regulator of ribonuclease activity B
AL539_RS09845	PF02274	Amidinotransferase
AL539_RS09850	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL539_RS09850	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL539_RS09860	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL539_RS09860	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL539_RS09865	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AL539_RS09865	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AL539_RS09870	PF01042	Endoribonuclease L-PSP
AL539_RS09875	PF01553	Acyltransferase
AL539_RS09880	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL539_RS09885	PF01722	BolA-like protein
AL539_RS09890	PF13466	STAS domain
AL539_RS09895	PF05494	Toluene tolerance, Ttg2
AL539_RS09900	PF02470	AL539_RS09900
AL539_RS09905	PF02405	AL539_RS09905
AL539_RS09910	PF00005	ABC transporter
AL539_RS09915	PF01699	Sodium/calcium exchanger protein
AL539_RS09920	PF00571	CBS domain
AL539_RS09920	PF01380	SIS domain
AL539_RS09925	PF06835	Lipopolysaccharide-assembly, LptC-related
AL539_RS09930	PF03968	OstA-like protein
AL539_RS09935	PF00005	ABC transporter
AL539_RS09935	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL539_RS09940	PF00309	AL539_RS09940
AL539_RS09940	PF04552	Sigma-54, DNA binding domain
AL539_RS09940	PF04963	Sigma-54 factor, core binding domain
AL539_RS09945	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL539_RS09950	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS09955	PF03668	AL539_RS09955
AL539_RS09960	PF00381	PTS HPr component phosphorylation site
AL539_RS09965	PF00571	CBS domain
AL539_RS09965	PF01769	Divalent cation transporter
AL539_RS09965	PF03448	MgtE intracellular N domain
AL539_RS09970	PF01523	Putative modulator of DNA gyrase
AL539_RS09975	PF04751	Protein of unknown function (DUF615)
AL539_RS09980	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_RS09980	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_RS09985	PF00849	RNA pseudouridylate synthase
AL539_RS09995	PF00176	SNF2 family N-terminal domain
AL539_RS09995	PF00271	Helicase conserved C-terminal domain
AL539_RS09995	PF12137	RNA polymerase recycling family C-terminal
AL539_RS10000	PF02562	PhoH-like protein
AL539_RS10000	PF13638	PIN domain
AL539_RS10005	PF01523	Putative modulator of DNA gyrase
AL539_RS10010	PF00795	Carbon-nitrogen hydrolase
AL539_RS10015	PF13116	AL539_RS10015
AL539_RS10015	PF13502	AL539_RS10015
AL539_RS10020	PF00575	S1 RNA binding domain
AL539_RS10020	PF10150	Ribonuclease E/G family
AL539_RS10025	PF02545	Maf-like protein
AL539_RS10030	PF04093	AL539_RS10030
AL539_RS10035	PF04085	rod shape-determining protein MreC
AL539_RS10040	PF06723	MreB/Mbl protein
AL539_RS10050	PF13737	AL539_RS10050
AL539_RS10060	PF00563	EAL domain
AL539_RS10060	PF00990	GGDEF domain
AL539_RS10060	PF17157	AL539_RS10060
AL539_RS10065	PF00436	Single-strand binding protein family
AL539_RS10070	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS10075	PF00483	Nucleotidyl transferase
AL539_RS10080	PF00005	ABC transporter
AL539_RS10085	PF04932	AL539_RS10085
AL539_RS10085	PF11846	AL539_RS10085
AL539_RS10085	PF15864	AL539_RS10085
AL539_RS10090	PF00266	Aminotransferase class-V
AL539_RS10100	PF00696	Amino acid kinase family
AL539_RS10105	PF00809	Pterin binding enzyme
AL539_RS10105	PF02310	B12 binding domain
AL539_RS10105	PF02574	Homocysteine S-methyltransferase
AL539_RS10105	PF02607	B12 binding domain
AL539_RS10105	PF02965	Vitamin B12 dependent methionine synthase, activation domain
AL539_RS10110	PF00999	Sodium/hydrogen exchanger family
AL539_RS10170	PF01507	Phosphoadenosine phosphosulfate reductase family
AL539_RS10175	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL539_RS10175	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL539_RS10180	PF00175	Oxidoreductase NAD-binding domain
AL539_RS10180	PF00258	Flavodoxin
AL539_RS10180	PF00667	FAD binding domain
AL539_RS10190	PF13505	Outer membrane protein beta-barrel domain
AL539_RS10195	PF09583	AL539_RS10195
AL539_RS10200	PF01207	Dihydrouridine synthase (Dus)
AL539_RS10205	PF01475	Ferric uptake regulator family
AL539_RS10210	PF13690	Chemotaxis phosphatase CheX
AL539_RS10215	PF00342	Phosphoglucose isomerase
AL539_RS10220	PF01894	Uncharacterised protein family UPF0047
AL539_RS10225	PF00842	Alanine racemase, C-terminal domain
AL539_RS10225	PF01168	Alanine racemase, N-terminal domain
AL539_RS10230	PF00772	DnaB-like helicase N terminal domain
AL539_RS10230	PF03796	DnaB-like helicase C terminal domain
AL539_RS10235	PF04338	Protein of unknown function, DUF481
AL539_RS10240	PF01281	Ribosomal protein L9, N-terminal domain
AL539_RS10240	PF03948	Ribosomal protein L9, C-terminal domain
AL539_RS10245	PF01084	Ribosomal protein S18
AL539_RS10250	PF00436	Single-strand binding protein family
AL539_RS10255	PF01250	Ribosomal protein S6
AL539_RS10260	PF00834	Ribulose-phosphate 3 epimerase family
AL539_RS10265	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AL539_RS10270	PF05036	Sporulation related domain
AL539_RS10270	PF13401	AAA domain
AL539_RS10275	PF01761	3-dehydroquinate synthase
AL539_RS10280	PF01202	Shikimate kinase
AL539_RS10285	PF00263	AL539_RS10285
AL539_RS10285	PF03958	Bacterial type II/III secretion system short domain
AL539_RS10290	PF04351	Pilus assembly protein, PilP
AL539_RS10295	PF04350	Pilus assembly protein, PilO
AL539_RS10300	PF05137	AL539_RS10300
AL539_RS10305	PF11104	Type IV pilus assembly protein PilM;
AL539_RS10310	PF00905	Penicillin binding protein transpeptidase domain
AL539_RS10310	PF00912	Transglycosylase
AL539_RS10310	PF17092	AL539_RS10310
AL539_RS10315	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS10315	PF03466	LysR substrate binding domain
AL539_RS10320	PF00462	Glutaredoxin
AL539_RS10320	PF08534	Redoxin
AL539_RS10325	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_RS10325	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS10330	PF12292	AL539_RS10330
AL539_RS10335	PF00206	Lyase
AL539_RS10335	PF00583	Acetyltransferase (GNAT) family
AL539_RS10335	PF14698	Argininosuccinate lyase C-terminal
AL539_RS10340	PF00764	Arginosuccinate synthase
AL539_RS10345	PF00696	Amino acid kinase family
AL539_RS10350	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL539_RS10350	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL539_RS10355	PF01546	Peptidase family M20/M25/M40
AL539_RS10355	PF07687	Peptidase dimerisation domain
AL539_RS10360	PF00311	Phosphoenolpyruvate carboxylase
AL539_RS10365	PF03551	Transcriptional regulator PadR-like family
AL539_RS10365	PF10400	Virulence activator alpha C-term
AL539_RS10370	PF02219	Methylenetetrahydrofolate reductase
AL539_RS10375	PF00696	Amino acid kinase family
AL539_RS10375	PF00742	Homoserine dehydrogenase
AL539_RS10375	PF03447	Homoserine dehydrogenase, NAD binding domain
AL539_RS10380	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL539_RS10385	PF01340	Met Apo-repressor, MetJ
AL539_RS10390	PF00390	Malic enzyme, N-terminal domain
AL539_RS10390	PF03949	Malic enzyme, NAD binding domain
AL539_RS10395	PF00210	Ferritin-like domain
AL539_RS10400	PF04324	BFD-like [2Fe-2S] binding domain
AL539_RS10405	PF00009	Elongation factor Tu GTP binding domain
AL539_RS10405	PF03143	Elongation factor Tu C-terminal domain
AL539_RS10405	PF03144	Elongation factor Tu domain 2
AL539_RS10410	PF00009	Elongation factor Tu GTP binding domain
AL539_RS10410	PF00679	Elongation factor G C-terminus
AL539_RS10410	PF03144	Elongation factor Tu domain 2
AL539_RS10410	PF03764	Elongation factor G, domain IV
AL539_RS10410	PF14492	Elongation Factor G, domain II
AL539_RS10415	PF00177	Ribosomal protein S7p/S5e
AL539_RS10420	PF00164	Ribosomal protein S12/S23
AL539_RS10425	PF04077	DsrH like protein
AL539_RS10430	PF02635	DsrE/DsrF-like family
AL539_RS10435	PF02635	DsrE/DsrF-like family
AL539_RS10440	PF08348	AL539_RS10440
AL539_RS10440	PF13309	AL539_RS10440
AL539_RS10445	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_RS10445	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL539_RS10450	PF13360	PQQ-like domain
AL539_RS10455	PF04102	SlyX
AL539_RS10460	PF01112	Asparaginase
AL539_RS10470	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_RS10475	PF09526	AL539_RS10475
AL539_RS10480	PF00999	Sodium/hydrogen exchanger family
AL539_RS10480	PF02254	TrkA-N domain
AL539_RS10485	PF02525	Flavodoxin-like fold
AL539_RS10490	PF00005	ABC transporter
AL539_RS10490	PF12848	ABC transporter
AL539_RS10495	PF09523	AL539_RS10495
AL539_RS10500	PF00561	alpha/beta hydrolase fold
AL539_RS10505	PF06794	Uncharacterised protein family (UPF0270)
AL539_RS10510	PF00485	Phosphoribulokinase / Uridine kinase family
AL539_RS10515	PF00027	Cyclic nucleotide-binding domain
AL539_RS10515	PF00325	Bacterial regulatory proteins, crp family
AL539_RS10520	PF07063	Domain of unknown function (DUF1338)
AL539_RS10525	PF00171	Aldehyde dehydrogenase family
AL539_RS10530	PF04958	Arginine N-succinyltransferase beta subunit
AL539_RS10535	PF00202	Aminotransferase class-III
AL539_RS10540	PF00117	Glutamine amidotransferase class-I
AL539_RS10545	PF01047	MarR family
AL539_RS10550	PF00892	EamA-like transporter family
AL539_RS10555	PF03358	NADPH-dependent FMN reductase
AL539_RS10560	PF01546	Peptidase family M20/M25/M40
AL539_RS10560	PF07687	Peptidase dimerisation domain
AL539_RS10565	PF03806	AL539_RS10565
AL539_RS10570	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS10570	PF03466	LysR substrate binding domain
AL539_RS10575	PF00932	Lamin Tail Domain
AL539_RS10575	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS10585	PF00579	tRNA synthetases class I (W and Y)
AL539_RS10590	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS10595	PF00588	SpoU rRNA Methylase family
AL539_RS10595	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AL539_RS10600	PF00575	S1 RNA binding domain
AL539_RS10600	PF00773	RNB domain
AL539_RS10600	PF08206	Ribonuclease B OB domain
AL539_RS10600	PF08461	Ribonuclease R winged-helix domain
AL539_RS10605	PF02082	Transcriptional regulator
AL539_RS10610	PF00042	Globin
AL539_RS10610	PF00175	Oxidoreductase NAD-binding domain
AL539_RS10610	PF00970	Oxidoreductase FAD-binding domain
AL539_RS10615	PF08238	Sel1 repeat
AL539_RS10625	PF00709	Adenylosuccinate synthetase
AL539_RS10630	PF09838	AL539_RS10630
AL539_RS10635	PF01145	SPFH domain / Band 7 family
AL539_RS10640	PF01145	SPFH domain / Band 7 family
AL539_RS10640	PF12221	AL539_RS10640
AL539_RS10645	PF01926	50S ribosome-binding GTPase
AL539_RS10645	PF13167	AL539_RS10645
AL539_RS10645	PF16360	AL539_RS10645
AL539_RS10650	PF17209	AL539_RS10650
AL539_RS10655	PF01715	IPP transferase
AL539_RS10660	PF01119	DNA mismatch repair protein, C-terminal domain
AL539_RS10660	PF08676	MutL C terminal dimerisation domain
AL539_RS10660	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS10665	PF01476	LysM domain
AL539_RS10665	PF01520	N-acetylmuramoyl-L-alanine amidase
AL539_RS10665	PF11741	AMIN domain
AL539_RS10670	PF02367	Uncharacterised P-loop hydrolase UPF0079
AL539_RS10680	PF08331	AL539_RS10680
AL539_RS10680	PF13484	AL539_RS10680
AL539_RS10745	PF00929	Exonuclease
AL539_RS10750	PF03193	Protein of unknown function, DUF258
AL539_RS10755	PF02666	AL539_RS10755
AL539_RS10760	PF00939	Sodium:sulfate symporter transmembrane region
AL539_RS10765	PF00892	EamA-like transporter family
AL539_RS10770	PF01676	Metalloenzyme superfamily
AL539_RS10770	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AL539_RS10775	PF00581	Rhodanese-like domain
AL539_RS10780	PF02556	Preprotein translocase subunit SecB
AL539_RS10785	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AL539_RS10785	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AL539_RS10790	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS10790	PF06426	Serine acetyltransferase, N-terminal
AL539_RS10795	PF01551	Peptidase family M23
AL539_RS10805	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS10805	PF13972	Bacterial transcriptional repressor
AL539_RS10810	PF04892	AL539_RS10810
AL539_RS10815	PF00152	tRNA synthetases class II (D, K and N)
AL539_RS10820	PF00890	FAD binding domain
AL539_RS10820	PF02910	Fumarate reductase flavoprotein C-term
AL539_RS10825	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL539_RS10825	PF13183	4Fe-4S dicluster domain
AL539_RS10830	PF02300	Fumarate reductase subunit C
AL539_RS10835	PF02313	Fumarate reductase subunit D
AL539_RS10840	PF01145	SPFH domain / Band 7 family
AL539_RS10845	PF01132	Elongation factor P (EF-P) OB domain
AL539_RS10845	PF08207	Elongation factor P (EF-P) KOW-like domain
AL539_RS10845	PF09285	Elongation factor P, C-terminal
AL539_RS10850	PF04055	Radical SAM superfamily
AL539_RS10850	PF13353	4Fe-4S single cluster domain
AL539_RS10855	PF02308	AL539_RS10855
AL539_RS10865	PF00118	TCP-1/cpn60 chaperonin family
AL539_RS10870	PF00166	Chaperonin 10 Kd subunit
AL539_RS10875	PF01554	MatE
AL539_RS10880	PF00365	Phosphofructokinase
AL539_RS10885	PF01545	Cation efflux family
AL539_RS10885	PF16916	AL539_RS10885
AL539_RS10890	PF07813	LTXXQ motif family protein
AL539_RS10895	PF00072	Response regulator receiver domain
AL539_RS10895	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS10900	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS10900	PF00672	HAMP domain
AL539_RS10900	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS10900	PF16527	AL539_RS10900
AL539_RS10905	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL539_RS10905	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL539_RS10910	PF00588	SpoU rRNA Methylase family
AL539_RS10915	PF04186	AL539_RS10915
AL539_RS10920	PF00206	Lyase
AL539_RS10920	PF10415	Fumarase C C-terminus
AL539_RS10925	PF03605	AL539_RS10925
AL539_RS10930	PF02683	AL539_RS10930
AL539_RS10930	PF11412	Disulphide bond corrector protein DsbC
AL539_RS10930	PF13899	Thioredoxin-like
AL539_RS10935	PF00072	Response regulator receiver domain
AL539_RS10935	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS10940	PF00999	Sodium/hydrogen exchanger family
AL539_RS10940	PF02080	TrkA-C domain
AL539_RS10940	PF03471	Transporter associated domain
AL539_RS10945	PF13937	AL539_RS10945
AL539_RS10950	PF00474	Sodium:solute symporter family
AL539_RS10965	PF00206	Lyase
AL539_RS10965	PF10415	Fumarase C C-terminus
AL539_RS10970	PF00072	Response regulator receiver domain
AL539_RS10970	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS10970	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS10970	PF12860	AL539_RS10970
AL539_RS10975	PF12832	MFS_1 like family
AL539_RS10980	PF00027	Cyclic nucleotide-binding domain
AL539_RS10980	PF03445	AL539_RS10980
AL539_RS10980	PF10335	AL539_RS10980
AL539_RS10985	PF00929	Exonuclease
AL539_RS10990	PF00501	AMP-binding enzyme
AL539_RS10990	PF13193	AMP-binding enzyme C-terminal domain
AL539_RS10990	PF16177	AL539_RS10990
AL539_RS10995	PF01220	Dehydroquinase class II
AL539_RS11000	PF00364	Biotin-requiring enzyme
AL539_RS11005	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL539_RS11005	PF02785	Biotin carboxylase C-terminal domain
AL539_RS11005	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL539_RS11015	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AL539_RS11020	PF01207	Dihydrouridine synthase (Dus)
AL539_RS11025	PF02954	Bacterial regulatory protein, Fis family
AL539_RS11030	PF07690	Major Facilitator Superfamily
AL539_RS11035	PF00005	ABC transporter
AL539_RS11035	PF12848	ABC transporter
AL539_RS11100	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL539_RS11100	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL539_RS11100	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL539_RS11105	PF13520	Amino acid permease
AL539_RS11115	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS11120	PF00376	MerR family regulatory protein
AL539_RS11120	PF09278	MerR, DNA binding
AL539_RS11130	PF01808	AICARFT/IMPCHase bienzyme
AL539_RS11130	PF02142	MGS-like domain
AL539_RS11135	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AL539_RS11135	PF02843	Phosphoribosylglycinamide synthetase, C domain
AL539_RS11135	PF02844	Phosphoribosylglycinamide synthetase, N domain
AL539_RS11140	PF07356	AL539_RS11140
AL539_RS11145	PF00216	Bacterial DNA-binding protein
AL539_RS11150	PF00571	CBS domain
AL539_RS11150	PF01595	AL539_RS11150
AL539_RS11155	PF04222	Protein of unknown function (DUF416)
AL539_RS11160	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_RS11165	PF03167	Uracil DNA glycosylase superfamily
AL539_RS11170	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AL539_RS11175	PF00293	NUDIX domain
AL539_RS11175	PF09297	NADH pyrophosphatase zinc ribbon domain
AL539_RS11180	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
AL539_RS11185	PF00623	RNA polymerase Rpb1, domain 2
AL539_RS11185	PF04983	RNA polymerase Rpb1, domain 3
AL539_RS11185	PF04997	RNA polymerase Rpb1, domain 1
AL539_RS11185	PF04998	RNA polymerase Rpb1, domain 5
AL539_RS11185	PF05000	RNA polymerase Rpb1, domain 4
AL539_RS11190	PF00562	RNA polymerase Rpb2, domain 6
AL539_RS11190	PF04560	RNA polymerase Rpb2, domain 7
AL539_RS11190	PF04561	RNA polymerase Rpb2, domain 2
AL539_RS11190	PF04563	RNA polymerase beta subunit
AL539_RS11190	PF04565	RNA polymerase Rpb2, domain 3
AL539_RS11190	PF10385	RNA polymerase beta subunit external 1 domain
AL539_RS11195	PF00542	Ribosomal protein L7/L12 C-terminal domain
AL539_RS11195	PF16320	AL539_RS11195
AL539_RS11200	PF00466	Ribosomal protein L10
AL539_RS11205	PF00687	Ribosomal protein L1p/L10e family
AL539_RS11210	PF00298	Ribosomal protein L11, RNA binding domain
AL539_RS11210	PF03946	Ribosomal protein L11, N-terminal domain
AL539_RS11215	PF00467	KOW motif
AL539_RS11215	PF02357	Transcription termination factor nusG
AL539_RS11220	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AL539_RS11230	PF00009	Elongation factor Tu GTP binding domain
AL539_RS11230	PF03143	Elongation factor Tu C-terminal domain
AL539_RS11230	PF03144	Elongation factor Tu domain 2
AL539_RS11255	PF00485	Phosphoribulokinase / Uridine kinase family
AL539_RS11260	PF02237	Biotin protein ligase C terminal domain
AL539_RS11260	PF03099	Biotin/lipoate A/B protein ligase family
AL539_RS11260	PF08279	HTH domain
AL539_RS11265	PF01565	FAD binding domain
AL539_RS11265	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AL539_RS11270	PF13508	Acetyltransferase (GNAT) domain
AL539_RS11275	PF13091	PLD-like domain
AL539_RS11340	PF00076	RNA recognition motif
AL539_RS11345	PF01177	Asp/Glu/Hydantoin racemase
AL539_RS11350	PF01902	ATP-binding region
AL539_RS11355	PF00593	TonB dependent receptor
AL539_RS11355	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS11360	PF05958	tRNA (Uracil-5-)-methyltransferase
AL539_RS11365	PF07226	AL539_RS11365
AL539_RS11370	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS11375	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_RS11375	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS11380	PF01554	MatE
AL539_RS11385	PF04072	Leucine carboxyl methyltransferase
AL539_RS11395	PF00717	Peptidase S24-like
AL539_RS11395	PF01726	LexA DNA binding domain
AL539_RS11405	PF01553	Acyltransferase
AL539_RS11410	PF01040	UbiA prenyltransferase family
AL539_RS11415	PF04345	Chorismate lyase
AL539_RS11420	PF03748	AL539_RS11420
AL539_RS11425	PF01694	Rhomboid family
AL539_RS11425	PF12122	Protein of unknown function (DUF3582)
AL539_RS11430	PF00581	Rhodanese-like domain
AL539_RS11440	PF00140	Sigma-70 factor, region 1
AL539_RS11440	PF04542	Sigma-70 region 2
AL539_RS11440	PF04545	Sigma-70, region 4
AL539_RS11450	PF00005	ABC transporter
AL539_RS11455	PF00448	SRP54-type protein, GTPase domain
AL539_RS11455	PF02881	SRP54-type protein, helical bundle domain
AL539_RS11460	PF03602	Conserved hypothetical protein 95
AL539_RS11465	PF06611	AL539_RS11465
AL539_RS11470	PF01914	AL539_RS11470
AL539_RS11475	PF10678	AL539_RS11475
AL539_RS11480	PF07947	AL539_RS11480
AL539_RS11490	PF13643	AL539_RS11490
AL539_RS11495	PF10694	Protein of unknown function (DUF2500)
AL539_RS11500	PF01757	AL539_RS11500
AL539_RS11505	PF07690	Major Facilitator Superfamily
AL539_RS11510	PF05706	Cyclin-dependent kinase inhibitor 3 (CDKN3)
AL539_RS11515	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_RS11515	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_RS11520	PF01022	Bacterial regulatory protein, arsR family
AL539_RS11525	PF00563	EAL domain
AL539_RS11525	PF08668	HDOD domain
AL539_RS11530	PF01810	AL539_RS11530
AL539_RS11535	PF12146	Putative lysophospholipase
AL539_RS11540	PF08282	haloacid dehalogenase-like hydrolase
AL539_RS11545	PF01878	EVE domain
AL539_RS11555	PF03942	AL539_RS11555
AL539_RS11560	PF00563	EAL domain
AL539_RS11560	PF00990	GGDEF domain
AL539_RS11560	PF08495	AL539_RS11560
AL539_RS11560	PF10442	AL539_RS11560
AL539_RS11565	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS11570	PF00589	Phage integrase family
AL539_RS11570	PF02899	Phage integrase, N-terminal SAM-like domain
AL539_RS11575	PF04340	Protein of unknown function, DUF484
AL539_RS11580	PF01678	Diaminopimelate epimerase
AL539_RS11585	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL539_RS11585	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL539_RS11595	PF01491	Frataxin-like domain
AL539_RS11600	PF01295	AL539_RS11600
AL539_RS11600	PF12633	AL539_RS11600
AL539_RS11605	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AL539_RS11605	PF03900	Porphobilinogen deaminase, C-terminal domain
AL539_RS11610	PF02602	Uroporphyrinogen-III synthase HemD
AL539_RS11615	PF04375	AL539_RS11615
AL539_RS11620	PF07219	AL539_RS11620
AL539_RS11660	PF00175	Oxidoreductase NAD-binding domain
AL539_RS11665	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS11670	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AL539_RS11680	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_RS11680	PF07497	Rho termination factor, RNA-binding domain
AL539_RS11680	PF07498	Rho termination factor, N-terminal domain
AL539_RS11685	PF00085	Thioredoxin
AL539_RS11690	PF00270	DEAD/DEAH box helicase
AL539_RS11690	PF00271	Helicase conserved C-terminal domain
AL539_RS11695	PF02541	Ppx/GppA phosphatase family
AL539_RS11700	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_RS11700	PF04321	RmlD substrate binding domain
AL539_RS11705	PF02592	AL539_RS11705
AL539_RS11710	PF12305	AL539_RS11710
AL539_RS11715	PF00270	DEAD/DEAH box helicase
AL539_RS11715	PF00271	Helicase conserved C-terminal domain
AL539_RS11715	PF00570	HRDC domain
AL539_RS11715	PF09382	RQC domain
AL539_RS11715	PF16124	AL539_RS11715
AL539_RS11720	PF00892	EamA-like transporter family
AL539_RS11725	PF02311	AraC-like ligand binding domain
AL539_RS11725	PF12833	Helix-turn-helix domain
AL539_RS11730	PF01810	AL539_RS11730
AL539_RS11735	PF01019	Gamma-glutamyltranspeptidase
AL539_RS11745	PF00580	UvrD/REP helicase N-terminal domain
AL539_RS11745	PF13361	UvrD-like helicase C-terminal domain
AL539_RS11750	PF10048	AL539_RS11750
AL539_RS11755	PF05114	Protein of unknown function (DUF692)
AL539_RS11760	PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
AL539_RS11765	PF07681	AL539_RS11765
AL539_RS11775	PF07690	Major Facilitator Superfamily
AL539_RS11780	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS11780	PF03466	LysR substrate binding domain
AL539_RS11785	PF00557	Metallopeptidase family M24
AL539_RS11785	PF01321	Creatinase/Prolidase N-terminal domain
AL539_RS11785	PF16188	AL539_RS11785
AL539_RS11785	PF16189	AL539_RS11785
AL539_RS11790	PF04055	Radical SAM superfamily
AL539_RS11790	PF06968	Biotin and Thiamin Synthesis associated domain
AL539_RS11795	PF05690	Thiazole biosynthesis protein ThiG
AL539_RS11800	PF02597	ThiS family
AL539_RS11805	PF00899	ThiF family
AL539_RS11810	PF02581	Thiamine monophosphate synthase/TENI
AL539_RS11815	PF01964	ThiC family
AL539_RS11815	PF13667	ThiC-associated domain
AL539_RS11820	PF02537	AL539_RS11820
AL539_RS11825	PF00394	Multicopper oxidase
AL539_RS11825	PF07731	Multicopper oxidase
AL539_RS11825	PF07732	Multicopper oxidase
AL539_RS11825	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AL539_RS11840	PF13031	AL539_RS11840
AL539_RS11850	PF03175	DNA polymerase type B, organellar and viral
AL539_RS11875	PF13280	AL539_RS11875
AL539_RS11880	PF10980	Protein of unknown function (DUF2787)
AL539_RS11895	PF00589	Phage integrase family
AL539_RS11895	PF13356	Domain of unknown function (DUF4102)
AL539_RS11955	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS11960	PF07369	Protein of unknown function (DUF1488)
AL539_RS11965	PF01488	Shikimate / quinate 5-dehydrogenase
AL539_RS11965	PF08501	Shikimate dehydrogenase substrate binding domain
AL539_RS11970	PF01218	Coproporphyrinogen III oxidase
AL539_RS11975	PF01300	Telomere recombination
AL539_RS11980	PF00731	AIR carboxylase
AL539_RS11985	PF02222	ATP-grasp domain
AL539_RS11990	PF01396	AL539_RS11990
AL539_RS11995	PF04361	AL539_RS11995
AL539_RS12000	PF02481	DNA recombination-mediator protein A
AL539_RS12005	PF01476	LysM domain
AL539_RS12010	PF01327	Polypeptide deformylase
AL539_RS12015	PF00551	Formyl transferase
AL539_RS12015	PF02911	Formyl transferase, C-terminal domain
AL539_RS12020	PF01029	NusB family
AL539_RS12020	PF01189	NOL1/NOP2/sun family
AL539_RS12025	PF02080	TrkA-C domain
AL539_RS12025	PF02254	TrkA-N domain
AL539_RS12030	PF02386	Cation transport protein
AL539_RS12035	PF11355	AL539_RS12035
AL539_RS12040	PF03006	AL539_RS12040
AL539_RS12045	PF07070	AL539_RS12045
AL539_RS12055	PF06288	Protein of unknown function (DUF1040)
AL539_RS12060	PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
AL539_RS12060	PF12801	AL539_RS12060
AL539_RS12060	PF13746	4Fe-4S dicluster domain
AL539_RS12065	PF01636	Phosphotransferase enzyme family
AL539_RS12070	PF01323	DSBA-like thioredoxin domain
AL539_RS12075	PF01553	Acyltransferase
AL539_RS12080	PF11059	AL539_RS12080
AL539_RS12085	PF01078	Magnesium chelatase, subunit ChlI
AL539_RS12085	PF13335	AL539_RS12085
AL539_RS12085	PF13541	Subunit ChlI of Mg-chelatase
AL539_RS12090	PF00205	Thiamine pyrophosphate enzyme, central domain
AL539_RS12090	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_RS12090	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_RS12095	PF13710	ACT domain
AL539_RS12100	PF01063	Aminotransferase class IV
AL539_RS12105	PF00920	Dehydratase family
AL539_RS12110	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS12110	PF00585	C-terminal regulatory domain of Threonine dehydratase
AL539_RS12115	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS12115	PF03466	LysR substrate binding domain
AL539_RS12120	PF07690	Major Facilitator Superfamily
AL539_RS12125	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS12130	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS12135	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS12135	PF12804	MobA-like NTP transferase domain
AL539_RS12140	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AL539_RS12140	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AL539_RS12145	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_RS12145	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL539_RS12150	PF00231	ATP synthase
AL539_RS12155	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_RS12155	PF00306	ATP synthase alpha/beta chain, C terminal domain
AL539_RS12155	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL539_RS12160	PF00213	ATP synthase delta (OSCP) subunit
AL539_RS12165	PF00430	ATP synthase B/B' CF(0)
AL539_RS12170	PF00137	ATP synthase subunit C
AL539_RS12175	PF00119	ATP synthase A chain
AL539_RS12180	PF03899	AL539_RS12180
AL539_RS12185	PF02195	ParB-like nuclease domain
AL539_RS12190	PF13614	AAA domain
AL539_RS12195	PF02527	rRNA small subunit methyltransferase G
AL539_RS12200	PF01134	Glucose inhibited division protein A
AL539_RS12200	PF13932	GidA associated domain 3
AL539_RS12210	PF00258	Flavodoxin
AL539_RS12215	PF01926	50S ribosome-binding GTPase
AL539_RS12215	PF10396	GTP-binding protein TrmE N-terminus
AL539_RS12215	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
AL539_RS12220	PF02096	60Kd inner membrane protein
AL539_RS12220	PF14849	YidC periplasmic domain
AL539_RS12225	PF01809	AL539_RS12225
AL539_RS12230	PF00825	Ribonuclease P
AL539_RS12235	PF00468	Ribosomal protein L34
AL539_RS12240	PF00005	ABC transporter
AL539_RS12245	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS12250	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS12260	PF00308	Bacterial dnaA  protein
AL539_RS12260	PF08299	Bacterial dnaA protein helix-turn-helix
AL539_RS12260	PF11638	DnaA N-terminal domain
AL539_RS12265	PF00712	DNA polymerase III beta subunit, N-terminal domain
AL539_RS12265	PF02767	DNA polymerase III beta subunit, central domain
AL539_RS12265	PF02768	DNA polymerase III beta subunit, C-terminal domain
AL539_RS12270	PF02463	RecF/RecN/SMC N terminal domain
AL539_RS12275	PF00204	DNA gyrase B
AL539_RS12275	PF00986	DNA gyrase B subunit, carboxyl terminus
AL539_RS12275	PF01751	Toprim domain
AL539_RS12275	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS12285	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_RS12295	PF00011	Hsp20/alpha crystallin family
AL539_RS12300	PF00155	Aminotransferase class I and II
AL539_RS12305	PF00128	Alpha amylase, catalytic domain
AL539_RS12310	PF02092	AL539_RS12310
AL539_RS12310	PF05746	DALR anticodon binding domain
AL539_RS12315	PF02091	Glycyl-tRNA synthetase alpha subunit
AL539_RS12320	PF01169	AL539_RS12320
AL539_RS12330	PF01206	Sulfurtransferase TusA
AL539_RS12340	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS12340	PF03466	LysR substrate binding domain
AL539_RS12345	PF00107	Zinc-binding dehydrogenase
AL539_RS12345	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS12350	PF00108	Thiolase, N-terminal domain
AL539_RS12350	PF02803	Thiolase, C-terminal domain
AL539_RS12355	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS12355	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL539_RS12355	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL539_RS12360	PF01205	Uncharacterized protein family UPF0029
AL539_RS12360	PF09186	Domain of unknown function (DUF1949)
AL539_RS12365	PF02386	Cation transport protein
AL539_RS12370	PF12724	Flavodoxin domain
AL539_RS12410	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS12410	PF03466	LysR substrate binding domain
AL539_RS12415	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AL539_RS12415	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AL539_RS12420	PF04380	AL539_RS12420
AL539_RS12425	PF00873	AcrB/AcrD/AcrF family
AL539_RS12430	PF16576	AL539_RS12430
AL539_RS12435	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS12435	PF16295	AL539_RS12435
AL539_RS12440	PF00580	UvrD/REP helicase N-terminal domain
AL539_RS12440	PF13361	UvrD-like helicase C-terminal domain
AL539_RS12445	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_RS12475	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS12485	PF00005	ABC transporter
AL539_RS12485	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS12490	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS12495	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS12500	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS12500	PF12911	AL539_RS12500
AL539_RS12510	PF05036	Sporulation related domain
AL539_RS12515	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS12515	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL539_RS12520	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS12520	PF03466	LysR substrate binding domain
AL539_RS12525	PF00893	Small Multidrug Resistance protein
AL539_RS12530	PF00893	Small Multidrug Resistance protein
AL539_RS12535	PF00920	Dehydratase family
AL539_RS12540	PF01202	Shikimate kinase
AL539_RS12545	PF02447	AL539_RS12545
AL539_RS12550	PF01081	KDPG and KHG aldolase
AL539_RS12555	PF01048	Phosphorylase superfamily
AL539_RS12560	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS12560	PF03466	LysR substrate binding domain
AL539_RS12565	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_RS12565	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS12570	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
AL539_RS12575	PF01432	Peptidase family M3
AL539_RS12580	PF01037	AsnC family
AL539_RS12580	PF13404	AsnC-type helix-turn-helix domain
AL539_RS12585	PF00563	EAL domain
AL539_RS12585	PF00990	GGDEF domain
AL539_RS12585	PF13426	PAS domain
AL539_RS12590	PF04445	Putative SAM-dependent methyltransferase
AL539_RS12600	PF00892	EamA-like transporter family
AL539_RS12605	PF00582	Universal stress protein family
AL539_RS12610	PF00210	Ferritin-like domain
AL539_RS12615	PF10625	AL539_RS12615
AL539_RS12620	PF03486	HI0933-like protein
AL539_RS12625	PF00158	Sigma-54 interaction domain
AL539_RS12625	PF02954	Bacterial regulatory protein, Fis family
AL539_RS12630	PF04972	BON domain
AL539_RS12635	PF07043	AL539_RS12635
AL539_RS12645	PF01814	Hemerythrin HHE cation binding domain
AL539_RS12650	PF00781	Diacylglycerol kinase catalytic domain
AL539_RS12650	PF00782	Dual specificity phosphatase, catalytic domain
AL539_RS12660	PF09537	Domain of unknown function (DUF2383)
AL539_RS12680	PF01594	AL539_RS12680
AL539_RS12685	PF00563	EAL domain
AL539_RS12685	PF00990	GGDEF domain
AL539_RS12685	PF08448	PAS fold
AL539_RS12685	PF13426	PAS domain
AL539_RS12690	PF00892	EamA-like transporter family
AL539_RS12695	PF02646	AL539_RS12695
AL539_RS12700	PF01209	ubiE/COQ5 methyltransferase family
AL539_RS12705	PF02036	SCP-2 sterol transfer family
AL539_RS12710	PF03109	AL539_RS12710
AL539_RS12715	PF02416	mttA/Hcf106 family
AL539_RS12720	PF02416	mttA/Hcf106 family
AL539_RS12725	PF00902	Sec-independent protein translocase protein (TatC)
AL539_RS12740	PF01026	TatD related DNase
AL539_RS12750	PF00490	Delta-aminolevulinic acid dehydratase
AL539_RS12755	PF00583	Acetyltransferase (GNAT) family
AL539_RS12765	PF00476	DNA polymerase family A
AL539_RS12765	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL539_RS12765	PF01612	3'-5' exonuclease
AL539_RS12765	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL539_RS12770	PF01926	50S ribosome-binding GTPase
AL539_RS12775	PF00034	Cytochrome c
AL539_RS12785	PF13489	Methyltransferase domain
AL539_RS12790	PF04220	AL539_RS12790
AL539_RS12795	PF10675	AL539_RS12795
AL539_RS12800	PF04055	Radical SAM superfamily
AL539_RS12800	PF06969	HemN C-terminal domain
AL539_RS12805	PF00962	Adenosine/AMP deaminase
AL539_RS12810	PF00563	EAL domain
AL539_RS12810	PF00990	GGDEF domain
AL539_RS12810	PF02743	Cache domain
AL539_RS12815	PF00072	Response regulator receiver domain
AL539_RS12815	PF00158	Sigma-54 interaction domain
AL539_RS12815	PF02954	Bacterial regulatory protein, Fis family
AL539_RS12820	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS12820	PF00989	PAS fold
AL539_RS12820	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS12825	PF13511	AL539_RS12825
AL539_RS12830	PF00120	Glutamine synthetase, catalytic domain
AL539_RS12830	PF03951	Glutamine synthetase, beta-Grasp domain
AL539_RS12835	PF00009	Elongation factor Tu GTP binding domain
AL539_RS12835	PF00679	Elongation factor G C-terminus
AL539_RS12835	PF03144	Elongation factor Tu domain 2
AL539_RS12840	PF13521	AAA domain
AL539_RS12845	PF11172	AL539_RS12845
AL539_RS12850	PF03631	AL539_RS12850
AL539_RS12855	PF02580	D-Tyr-tRNA(Tyr) deacylase
AL539_RS12860	PF09500	Putative thioesterase (yiiD_Cterm)
AL539_RS12860	PF13673	Acetyltransferase (GNAT) domain
AL539_RS12865	PF05170	AL539_RS12865
AL539_RS12870	PF01293	Phosphoenolpyruvate carboxykinase
AL539_RS12875	PF01430	Hsp33 protein
AL539_RS12880	PF01479	S4 domain
AL539_RS12885	PF11356	Type IV pilus biogenesis
AL539_RS12890	PF00263	AL539_RS12890
AL539_RS12890	PF03958	Bacterial type II/III secretion system short domain
AL539_RS12895	PF00437	Type II/IV secretion system protein
AL539_RS12900	PF00482	Type II secretion system (T2SS), protein F
AL539_RS12905	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS12905	PF08334	Type II secretion system (T2SS), protein G
AL539_RS12910	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS12910	PF12019	Type II transport protein GspH
AL539_RS12915	PF02501	Type II secretion system (T2SS), protein I
AL539_RS12920	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS12920	PF11612	Type II secretion system (T2SS), protein J
AL539_RS12925	PF03934	Type II secretion system (T2SS), protein K
AL539_RS12930	PF05134	Type II secretion system (T2SS), protein L
AL539_RS12930	PF12693	GspL periplasmic domain
AL539_RS12935	PF04612	Type II secretion system (T2SS), protein M
AL539_RS12940	PF01203	AL539_RS12940
AL539_RS12945	PF00459	Inositol monophosphatase family
AL539_RS12950	PF00293	NUDIX domain
AL539_RS12955	PF01106	NifU-like domain
AL539_RS12955	PF01521	Iron-sulphur cluster biosynthesis
AL539_RS12960	PF00156	Phosphoribosyl transferase domain
AL539_RS12965	PF00561	alpha/beta hydrolase fold
AL539_RS12975	PF00575	S1 RNA binding domain
AL539_RS12975	PF09371	Tex-like protein N-terminal domain
AL539_RS12975	PF12836	Helix-hairpin-helix motif
AL539_RS12975	PF16921	AL539_RS12975
AL539_RS12980	PF05618	Putative ATP-dependant zinc protease
AL539_RS12985	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_RS12985	PF03449	Transcription elongation factor, N-terminal
AL539_RS12990	PF06476	AL539_RS12990
AL539_RS12995	PF00072	Response regulator receiver domain
AL539_RS12995	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS13000	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS13000	PF00672	HAMP domain
AL539_RS13000	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS13005	PF00860	Permease family
AL539_RS13010	PF00270	DEAD/DEAH box helicase
AL539_RS13010	PF00271	Helicase conserved C-terminal domain
AL539_RS13010	PF17191	AL539_RS13010
AL539_RS13015	PF00588	SpoU rRNA Methylase family
AL539_RS13015	PF12105	SpoU, rRNA methylase, C-terminal
AL539_RS13020	PF02824	TGS domain
AL539_RS13020	PF04607	Region found in RelA / SpoT proteins
AL539_RS13020	PF13291	ACT domain
AL539_RS13020	PF13328	HD domain
AL539_RS13025	PF01192	RNA polymerase Rpb6
AL539_RS13030	PF00625	Guanylate kinase
AL539_RS13040	PF13181	Tetratricopeptide repeat
AL539_RS13045	PF03544	Gram-negative bacterial TonB protein C-terminal
AL539_RS13050	PF02472	Biopolymer transport protein ExbD/TolR
AL539_RS13055	PF01618	AL539_RS13055
AL539_RS13060	PF01618	AL539_RS13060
AL539_RS13065	PF11932	AL539_RS13065
AL539_RS13070	PF00593	TonB dependent receptor
AL539_RS13070	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS13080	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS13085	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS13090	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS13095	PF00005	ABC transporter
AL539_RS13095	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS13100	PF00005	ABC transporter
AL539_RS13105	PF06146	AL539_RS13105
AL539_RS13110	PF03755	AL539_RS13110
AL539_RS13110	PF08340	AL539_RS13110
AL539_RS13120	PF01138	3' exoribonuclease family, domain 1
AL539_RS13120	PF03725	3' exoribonuclease family, domain 2
AL539_RS13125	PF00156	Phosphoribosyl transferase domain
AL539_RS13130	PF03279	AL539_RS13130
AL539_RS13135	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS13140	PF02441	Flavoprotein
AL539_RS13140	PF04127	DNA / pantothenate metabolism flavoprotein
AL539_RS13150	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS13150	PF00672	HAMP domain
AL539_RS13150	PF17200	AL539_RS13150
AL539_RS13155	PF04002	RadC-like JAB domain
AL539_RS13160	PF00830	Ribosomal L28 family
AL539_RS13165	PF00471	Ribosomal protein L33
AL539_RS13175	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL539_RS13175	PF06827	Zinc finger found in FPG and IleRS
AL539_RS13175	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AL539_RS13180	PF01755	AL539_RS13180
AL539_RS13185	PF00534	Glycosyl transferases group 1
AL539_RS13190	PF01467	Cytidylyltransferase
AL539_RS13195	PF05686	AL539_RS13195
AL539_RS13200	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL539_RS13205	PF00534	Glycosyl transferases group 1
AL539_RS13205	PF13439	Glycosyltransferase Family 4
AL539_RS13210	PF01219	Prokaryotic diacylglycerol kinase
AL539_RS13215	PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
AL539_RS13220	PF16363	AL539_RS13220
AL539_RS13225	PF00483	Nucleotidyl transferase
AL539_RS13230	PF04321	RmlD substrate binding domain
AL539_RS13235	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
AL539_RS13240	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AL539_RS13255	PF00535	Glycosyl transferase family 2
AL539_RS13260	PF00534	Glycosyl transferases group 1
AL539_RS13260	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
AL539_RS13265	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL539_RS13270	PF03279	AL539_RS13270
AL539_RS13275	PF01370	NAD dependent epimerase/dehydratase family
AL539_RS13280	PF06082	AL539_RS13280
AL539_RS13285	PF06251	Capsule biosynthesis GfcC
AL539_RS13290	PF11102	Group 4 capsule polysaccharide formation lipoprotein gfcB
AL539_RS13300	PF13505	Outer membrane protein beta-barrel domain
AL539_RS13305	PF02563	Polysaccharide biosynthesis/export protein
AL539_RS13305	PF06251	Capsule biosynthesis GfcC
AL539_RS13305	PF10531	SLBB domain
AL539_RS13310	PF02706	Chain length determinant protein
AL539_RS13310	PF13807	AL539_RS13310
AL539_RS13315	PF16363	AL539_RS13315
AL539_RS13320	PF00483	Nucleotidyl transferase
AL539_RS13325	PF04321	RmlD substrate binding domain
AL539_RS13330	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
AL539_RS13335	PF01467	Cytidylyltransferase
AL539_RS13340	PF01943	AL539_RS13340
AL539_RS13345	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
AL539_RS13360	PF00535	Glycosyl transferase family 2
AL539_RS13365	PF00534	Glycosyl transferases group 1
AL539_RS13370	PF02397	AL539_RS13370
AL539_RS13375	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS13375	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_RS13380	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AL539_RS13385	PF02719	Polysaccharide biosynthesis protein
AL539_RS13385	PF13727	CoA-binding domain
AL539_RS13390	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AL539_RS13390	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AL539_RS13390	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AL539_RS13395	PF00753	Metallo-beta-lactamase superfamily
AL539_RS13395	PF07521	RNA-metabolising metallo-beta-lactamase
AL539_RS13395	PF10996	Beta-Casp domain
AL539_RS13400	PF01609	Transposase DDE domain
AL539_RS13400	PF14104	AL539_RS13400
AL539_RS13405	PF00121	Triosephosphate isomerase
AL539_RS13410	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
AL539_RS13415	PF05656	AL539_RS13415
AL539_RS13420	PF11333	AL539_RS13420
AL539_RS13425	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS13430	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
AL539_RS13435	PF06005	Protein of unknown function (DUF904)
AL539_RS13440	PF03737	Demethylmenaquinone methyltransferase
AL539_RS13445	PF01040	UbiA prenyltransferase family
AL539_RS13455	PF11726	AL539_RS13455
AL539_RS13465	PF13280	AL539_RS13465
AL539_RS13470	PF10980	Protein of unknown function (DUF2787)
AL539_RS13475	PF04002	RadC-like JAB domain
AL539_RS13485	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS13485	PF07724	AAA domain (Cdc48 subfamily)
AL539_RS13490	PF00227	Proteasome subunit
AL539_RS13495	PF05036	Sporulation related domain
AL539_RS13500	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS13500	PF13377	Periplasmic binding protein-like domain
AL539_RS13505	PF00270	DEAD/DEAH box helicase
AL539_RS13505	PF00271	Helicase conserved C-terminal domain
AL539_RS13515	PF01197	Ribosomal protein L31
AL539_RS13520	PF00338	Ribosomal protein S10p/S20e
AL539_RS13525	PF00297	Ribosomal protein L3
AL539_RS13530	PF00573	Ribosomal protein L4/L1 family
AL539_RS13535	PF00276	Ribosomal protein L23
AL539_RS13540	PF00181	Ribosomal Proteins L2, RNA binding domain
AL539_RS13540	PF03947	Ribosomal Proteins L2, C-terminal domain
AL539_RS13545	PF00203	Ribosomal protein S19
AL539_RS13550	PF00237	Ribosomal protein L22p/L17e
AL539_RS13555	PF00189	Ribosomal protein S3, C-terminal domain
AL539_RS13555	PF07650	KH domain
AL539_RS13560	PF00252	Ribosomal protein L16p/L10e
AL539_RS13565	PF00831	Ribosomal L29 protein
AL539_RS13570	PF00366	Ribosomal protein S17
AL539_RS13575	PF00238	Ribosomal protein L14p/L23e
AL539_RS13580	PF00467	KOW motif
AL539_RS13580	PF17136	AL539_RS13580
AL539_RS13585	PF00281	Ribosomal protein L5
AL539_RS13585	PF00673	ribosomal L5P family C-terminus
AL539_RS13590	PF00253	Ribosomal protein S14p/S29e
AL539_RS13595	PF00410	Ribosomal protein S8
AL539_RS13600	PF00347	Ribosomal protein L6
AL539_RS13605	PF00861	Ribosomal L18p/L5e family
AL539_RS13610	PF00333	Ribosomal protein S5, N-terminal domain
AL539_RS13610	PF03719	Ribosomal protein S5, C-terminal domain
AL539_RS13615	PF00327	Ribosomal protein L30p/L7e
AL539_RS13620	PF00828	Ribosomal protein L18e/L15
AL539_RS13625	PF00344	SecY translocase
AL539_RS13630	PF00444	Ribosomal protein L36
AL539_RS13635	PF00416	Ribosomal protein S13/S18
AL539_RS13640	PF00411	Ribosomal protein S11
AL539_RS13645	PF00163	Ribosomal protein S4/S9 N-terminal domain
AL539_RS13645	PF01479	S4 domain
AL539_RS13650	PF01000	RNA polymerase Rpb3/RpoA insert domain
AL539_RS13650	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AL539_RS13650	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AL539_RS13655	PF01196	Ribosomal protein L17
AL539_RS13660	PF11075	AL539_RS13660
AL539_RS13665	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_RS13665	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL539_RS13670	PF04225	Opacity-associated protein A LysM-like domain
AL539_RS13670	PF08525	AL539_RS13670
AL539_RS13675	PF13673	Acetyltransferase (GNAT) domain
AL539_RS13680	PF00270	DEAD/DEAH box helicase
AL539_RS13680	PF00271	Helicase conserved C-terminal domain
AL539_RS13680	PF03880	DbpA RNA binding domain
AL539_RS13685	PF00027	Cyclic nucleotide-binding domain
AL539_RS13690	PF00149	Calcineurin-like phosphoesterase
AL539_RS13690	PF02872	5'-nucleotidase, C-terminal domain
AL539_RS13695	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_RS13700	PF01507	Phosphoadenosine phosphosulfate reductase family
AL539_RS13705	PF00009	Elongation factor Tu GTP binding domain
AL539_RS13710	PF02080	TrkA-C domain
AL539_RS13710	PF03600	Citrate transporter
AL539_RS13715	PF01583	Adenylylsulphate kinase
AL539_RS13720	PF10987	AL539_RS13720
AL539_RS13725	PF11736	Protein of unknown function (DUF3299)
AL539_RS13730	PF02687	AL539_RS13730
AL539_RS13730	PF12704	MacB-like periplasmic core domain
AL539_RS13735	PF00005	ABC transporter
AL539_RS13740	PF10986	AL539_RS13740
AL539_RS13745	PF10795	AL539_RS13745
AL539_RS13750	PF09695	AL539_RS13750
AL539_RS13755	PF06526	Protein of unknown function (DUF1107)
AL539_RS13760	PF01625	Peptide methionine sulfoxide reductase
AL539_RS13765	PF01103	Surface antigen
AL539_RS13765	PF07244	Surface antigen variable number repeat
AL539_RS13765	PF17243	AL539_RS13765
AL539_RS13770	PF04357	AL539_RS13770
AL539_RS13775	PF06094	AIG2-like family
AL539_RS13780	PF10973	AL539_RS13780
AL539_RS13785	PF13737	AL539_RS13785
AL539_RS13795	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS13810	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_RS13815	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS13830	PF00719	Inorganic pyrophosphatase
AL539_RS13835	PF00316	Fructose-1-6-bisphosphatase
AL539_RS13845	PF01225	Mur ligase family, catalytic domain
AL539_RS13845	PF02875	Mur ligase family, glutamate ligase domain
AL539_RS13845	PF08245	Mur ligase middle domain
AL539_RS13850	PF02441	Flavoprotein
AL539_RS13855	PF13343	Bacterial extracellular solute-binding protein
AL539_RS13860	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS13865	PF00005	ABC transporter
AL539_RS13870	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS13870	PF03466	LysR substrate binding domain
AL539_RS13875	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_RS13880	PF00582	Universal stress protein family
AL539_RS13885	PF06808	AL539_RS13885
AL539_RS13885	PF11874	AL539_RS13885
AL539_RS13895	PF16868	AL539_RS13895
AL539_RS13905	PF01316	Arginine repressor, DNA binding domain
AL539_RS13905	PF02863	Arginine repressor, C-terminal domain
AL539_RS13910	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL539_RS13910	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL539_RS13920	PF00348	Polyprenyl synthetase
AL539_RS13925	PF00829	Ribosomal prokaryotic L21 protein
AL539_RS13930	PF01016	Ribosomal L27 protein
AL539_RS13935	PF01018	GTP1/OBG
AL539_RS13935	PF01926	50S ribosome-binding GTPase
AL539_RS13940	PF06738	AL539_RS13940
AL539_RS13945	PF12821	AL539_RS13945
AL539_RS13950	PF00186	Dihydrofolate reductase
AL539_RS13955	PF00149	Calcineurin-like phosphoesterase
AL539_RS13960	PF04379	Protein of unknown function (DUF525)
AL539_RS13965	PF00398	Ribosomal RNA adenine dimethylase
AL539_RS13970	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AL539_RS13975	PF09312	SurA N-terminal domain
AL539_RS13975	PF13616	PPIC-type PPIASE domain
AL539_RS13980	PF03968	OstA-like protein
AL539_RS13980	PF04453	Organic solvent tolerance protein
AL539_RS13985	PF00226	DnaJ domain
AL539_RS13985	PF05099	Tellurite resistance protein TerB
AL539_RS13990	PF04784	AL539_RS13990
AL539_RS13995	PF00694	Aconitase C-terminal domain
AL539_RS14000	PF00330	Aconitase family (aconitate hydratase)
AL539_RS14005	PF00180	Isocitrate/isopropylmalate dehydrogenase
AL539_RS14010	PF00682	HMGL-like
AL539_RS14010	PF08502	LeuA allosteric (dimerisation) domain
AL539_RS14020	PF08239	Bacterial SH3 domain
AL539_RS14025	PF01569	PAP2 superfamily
AL539_RS14030	PF13528	Glycosyl transferase family 1
AL539_RS14035	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS14035	PF03466	LysR substrate binding domain
AL539_RS14040	PF00501	AMP-binding enzyme
AL539_RS14045	PF00205	Thiamine pyrophosphate enzyme, central domain
AL539_RS14045	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_RS14045	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_RS14050	PF10369	Small subunit of acetolactate synthase
AL539_RS14050	PF13710	ACT domain
AL539_RS14055	PF00990	GGDEF domain
AL539_RS14055	PF02743	Cache domain
AL539_RS14055	PF13426	PAS domain
AL539_RS14060	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS14065	PF00224	Pyruvate kinase, barrel domain
AL539_RS14065	PF02887	Pyruvate kinase, alpha/beta domain
AL539_RS14070	PF00455	AL539_RS14070
AL539_RS14070	PF08220	DeoR-like helix-turn-helix domain
AL539_RS14075	PF01380	SIS domain
AL539_RS14075	PF13522	Glutamine amidotransferase domain
AL539_RS14080	PF08721	TnsA endonuclease C terminal
AL539_RS14080	PF08722	TnsA endonuclease N terminal
AL539_RS14085	PF00665	Integrase core domain
AL539_RS14085	PF09299	Mu transposase, C-terminal
AL539_RS14090	PF13401	AAA domain
AL539_RS14095	PF06527	AL539_RS14095
AL539_RS14095	PF15978	AL539_RS14095
AL539_RS14105	PF02384	N-6 DNA Methylase
AL539_RS14105	PF12161	HsdM N-terminal domain
AL539_RS14110	PF01420	Type I restriction modification DNA specificity domain
AL539_RS14115	PF00271	Helicase conserved C-terminal domain
AL539_RS14115	PF04851	Type III restriction enzyme, res subunit
AL539_RS14115	PF08463	AL539_RS14115
AL539_RS14115	PF13643	AL539_RS14115
AL539_RS14120	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
AL539_RS14130	PF00465	Iron-containing alcohol dehydrogenase
AL539_RS14135	PF02733	Dak1 domain
AL539_RS14140	PF02734	DAK2 domain
AL539_RS14145	PF00381	PTS HPr component phosphorylation site
AL539_RS14145	PF00391	PEP-utilising enzyme, mobile domain
AL539_RS14145	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_RS14145	PF03610	PTS system fructose IIA component
AL539_RS14145	PF05524	PEP-utilising enzyme, N-terminal
AL539_RS14150	PF00158	Sigma-54 interaction domain
AL539_RS14150	PF00989	PAS fold
AL539_RS14150	PF02954	Bacterial regulatory protein, Fis family
AL539_RS14155	PF05068	Mannitol repressor
AL539_RS14160	PF01232	Mannitol dehydrogenase Rossmann domain
AL539_RS14160	PF08125	Mannitol dehydrogenase C-terminal domain
AL539_RS14165	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS14165	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS14165	PF02378	Phosphotransferase system, EIIC
AL539_RS14170	PF13444	Acetyltransferase (GNAT) domain
AL539_RS14175	PF04402	Protein of unknown function (DUF541)
AL539_RS14185	PF03180	NLPA lipoprotein
AL539_RS14190	PF00589	Phage integrase family
AL539_RS14190	PF13356	Domain of unknown function (DUF4102)
AL539_RS14205	PF00313	'Cold-shock' DNA-binding domain
AL539_RS14220	PF00313	'Cold-shock' DNA-binding domain
AL539_RS14230	PF07804	HipA-like C-terminal domain
AL539_RS14230	PF13657	HipA N-terminal domain
AL539_RS14245	PF12728	Helix-turn-helix domain
AL539_RS14250	PF01396	AL539_RS14250
AL539_RS14250	PF04471	Restriction endonuclease
AL539_RS14255	PF13175	AAA ATPase domain
AL539_RS14260	PF13245	Part of AAA domain
AL539_RS14260	PF13361	UvrD-like helicase C-terminal domain
AL539_RS14270	PF14350	AL539_RS14270
AL539_RS14280	PF07804	HipA-like C-terminal domain
AL539_RS14280	PF13657	HipA N-terminal domain
AL539_RS14285	PF01381	Helix-turn-helix
AL539_RS14295	PF00140	Sigma-70 factor, region 1
AL539_RS14295	PF03979	Sigma-70 factor, region 1
AL539_RS14295	PF04539	Sigma-70 region 3
AL539_RS14295	PF04542	Sigma-70 region 2
AL539_RS14295	PF04545	Sigma-70, region 4
AL539_RS14295	PF04546	Sigma-70, non-essential region
AL539_RS14300	PF01807	CHC2 zinc finger
AL539_RS14300	PF08275	DNA primase catalytic core, N-terminal domain
AL539_RS14300	PF08278	DNA primase DnaG DnaB-binding
AL539_RS14300	PF10410	DnaB-helicase binding domain of primase
AL539_RS14300	PF13155	Toprim-like
AL539_RS14305	PF09424	Yqey-like protein
AL539_RS14310	PF01165	Ribosomal protein S21
AL539_RS14315	PF00814	Glycoprotease family
AL539_RS14320	PF00561	alpha/beta hydrolase fold
AL539_RS14325	PF02660	AL539_RS14325
AL539_RS14330	PF02152	Dihydroneopterin aldolase
AL539_RS14335	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL539_RS14340	PF02673	AL539_RS14340
AL539_RS14345	PF01743	Poly A polymerase head domain
AL539_RS14345	PF01966	HD domain
AL539_RS14345	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL539_RS14350	PF01471	Putative peptidoglycan binding domain
AL539_RS14350	PF13401	AAA domain
AL539_RS14355	PF16537	AL539_RS14355
AL539_RS14360	PF01019	Gamma-glutamyltranspeptidase
AL539_RS14365	PF08239	Bacterial SH3 domain
AL539_RS14370	PF01384	AL539_RS14370
AL539_RS14375	PF01865	Protein of unknown function DUF47
AL539_RS14380	PF01928	CYTH domain
AL539_RS14380	PF05235	CHAD domain
AL539_RS14385	PF07885	Ion channel
AL539_RS14390	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS14395	PF03710	Glutamate-ammonia ligase adenylyltransferase
AL539_RS14395	PF08335	GlnD PII-uridylyltransferase
AL539_RS14400	PF00294	pfkB family carbohydrate kinase
AL539_RS14400	PF01467	Cytidylyltransferase
AL539_RS14405	PF02321	Outer membrane efflux protein
AL539_RS14410	PF00293	NUDIX domain
AL539_RS14415	PF06853	AL539_RS14415
AL539_RS14420	PF00149	Calcineurin-like phosphoesterase
AL539_RS14425	PF05728	Uncharacterised protein family (UPF0227)
AL539_RS14430	PF00204	DNA gyrase B
AL539_RS14430	PF00986	DNA gyrase B subunit, carboxyl terminus
AL539_RS14430	PF01751	Toprim domain
AL539_RS14430	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS14435	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL539_RS14435	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL539_RS14440	PF13180	PDZ domain
AL539_RS14440	PF13365	Trypsin-like peptidase domain
AL539_RS14445	PF00595	PDZ domain (Also known as DHR or GLGF)
AL539_RS14445	PF13180	PDZ domain
AL539_RS14445	PF13365	Trypsin-like peptidase domain
AL539_RS14450	PF06295	AL539_RS14450
AL539_RS14460	PF03969	AFG1-like ATPase
AL539_RS14470	PF00572	Ribosomal protein L13
AL539_RS14475	PF00380	Ribosomal protein S9/S16
AL539_RS14480	PF00355	Rieske [2Fe-2S] domain
AL539_RS14480	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
AL539_RS14485	PF00032	Cytochrome b(C-terminal)/b6/petD
AL539_RS14485	PF00033	Cytochrome b(N-terminal)/b6/petB
AL539_RS14490	PF02167	Cytochrome C1 family
AL539_RS14495	PF00043	Glutathione S-transferase, C-terminal domain
AL539_RS14495	PF13417	Glutathione S-transferase, N-terminal domain
AL539_RS14500	PF04386	Stringent starvation protein B
AL539_RS14505	PF04972	BON domain
AL539_RS14510	PF13580	SIS domain
AL539_RS14515	PF02021	Uncharacterised protein family UPF0102
AL539_RS14520	PF04348	LppC putative lipoprotein
AL539_RS14525	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_RS14540	PF01795	MraW methylase family
AL539_RS14545	PF04999	AL539_RS14545
AL539_RS14550	PF00905	Penicillin binding protein transpeptidase domain
AL539_RS14550	PF03717	Penicillin-binding Protein dimerisation domain
AL539_RS14555	PF01225	Mur ligase family, catalytic domain
AL539_RS14555	PF02875	Mur ligase family, glutamate ligase domain
AL539_RS14555	PF08245	Mur ligase middle domain
AL539_RS14560	PF01225	Mur ligase family, catalytic domain
AL539_RS14560	PF02875	Mur ligase family, glutamate ligase domain
AL539_RS14560	PF08245	Mur ligase middle domain
AL539_RS14565	PF00953	Glycosyl transferase family 4
AL539_RS14565	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
AL539_RS14570	PF02875	Mur ligase family, glutamate ligase domain
AL539_RS14570	PF08245	Mur ligase middle domain
AL539_RS14575	PF01098	AL539_RS14575
AL539_RS14580	PF03033	Glycosyltransferase family 28 N-terminal domain
AL539_RS14580	PF04101	Glycosyltransferase family 28 C-terminal domain
AL539_RS14585	PF01225	Mur ligase family, catalytic domain
AL539_RS14585	PF02875	Mur ligase family, glutamate ligase domain
AL539_RS14585	PF08245	Mur ligase middle domain
AL539_RS14590	PF03799	Cell division protein FtsQ
AL539_RS14590	PF08478	POTRA domain, FtsQ-type
AL539_RS14595	PF02491	SHS2 domain inserted in FTSA
AL539_RS14595	PF14450	Cell division protein FtsA
AL539_RS14600	PF00091	Tubulin/FtsZ family, GTPase domain
AL539_RS14600	PF12327	FtsZ family, C-terminal domain
AL539_RS14605	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
AL539_RS14610	PF05258	AL539_RS14610
AL539_RS14615	PF01043	SecA preprotein cross-linking domain
AL539_RS14615	PF02810	SEC-C motif
AL539_RS14615	PF07516	SecA Wing and Scaffold domain
AL539_RS14615	PF07517	SecA DEAD-like domain
AL539_RS14620	PF00293	NUDIX domain
AL539_RS14625	PF01113	Dihydrodipicolinate reductase, N-terminus
AL539_RS14625	PF05173	Dihydrodipicolinate reductase, C-terminus
AL539_RS14630	PF00117	Glutamine amidotransferase class-I
AL539_RS14630	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AL539_RS14635	PF02142	MGS-like domain
AL539_RS14635	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL539_RS14635	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL539_RS14650	PF01925	AL539_RS14650
AL539_RS14655	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS14655	PF03466	LysR substrate binding domain
AL539_RS14660	PF03458	AL539_RS14660
AL539_RS14665	PF01497	Periplasmic binding protein
AL539_RS14670	PF03186	AL539_RS14670
AL539_RS14675	PF01048	Phosphorylase superfamily
AL539_RS14680	PF07386	AL539_RS14680
AL539_RS14685	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS14685	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL539_RS14690	PF00310	Glutamine amidotransferases class-II
AL539_RS14690	PF01493	GXGXG motif
AL539_RS14690	PF01645	Conserved region in glutamate synthase
AL539_RS14690	PF04898	Glutamate synthase central domain
AL539_RS14695	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS14695	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL539_RS14700	PF00310	Glutamine amidotransferases class-II
AL539_RS14700	PF01493	GXGXG motif
AL539_RS14700	PF01645	Conserved region in glutamate synthase
AL539_RS14700	PF04898	Glutamate synthase central domain
AL539_RS14705	PF04055	Radical SAM superfamily
AL539_RS14705	PF16199	AL539_RS14705
AL539_RS14710	PF00990	GGDEF domain
AL539_RS14710	PF08448	PAS fold
AL539_RS14710	PF13188	PAS domain
AL539_RS14715	PF00072	Response regulator receiver domain
AL539_RS14715	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS14715	PF01627	Hpt domain
AL539_RS14715	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS14715	PF08448	PAS fold
AL539_RS14725	PF00072	Response regulator receiver domain
AL539_RS14725	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS14735	PF11697	AL539_RS14735
AL539_RS14740	PF03737	Demethylmenaquinone methyltransferase
AL539_RS14755	PF00696	Amino acid kinase family
AL539_RS14755	PF00742	Homoserine dehydrogenase
AL539_RS14755	PF01842	ACT domain
AL539_RS14755	PF03447	Homoserine dehydrogenase, NAD binding domain
AL539_RS14755	PF13840	ACT domain
AL539_RS14760	PF00288	GHMP kinases N terminal domain
AL539_RS14760	PF08544	GHMP kinases C terminal
AL539_RS14765	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS14765	PF14821	Threonine synthase N terminus
AL539_RS14770	PF03358	NADPH-dependent FMN reductase
AL539_RS14775	PF01228	Glycine radical
AL539_RS14780	PF01261	Xylose isomerase-like TIM barrel
AL539_RS14790	PF03167	Uracil DNA glycosylase superfamily
AL539_RS14795	PF01814	Hemerythrin HHE cation binding domain
AL539_RS14800	PF12065	AL539_RS14800
AL539_RS14805	PF01235	AL539_RS14805
AL539_RS14810	PF03883	AL539_RS14810
AL539_RS14815	PF00270	DEAD/DEAH box helicase
AL539_RS14815	PF00271	Helicase conserved C-terminal domain
AL539_RS14820	PF05175	Methyltransferase small domain
AL539_RS14825	PF05525	AL539_RS14825
AL539_RS14830	PF00258	Flavodoxin
AL539_RS14835	PF00589	Phage integrase family
AL539_RS14835	PF02899	Phage integrase, N-terminal SAM-like domain
AL539_RS14840	PF10411	Disulfide bond isomerase protein N-terminus
AL539_RS14840	PF13098	Thioredoxin-like domain
AL539_RS14845	PF01368	DHH family
AL539_RS14845	PF02272	DHHA1 domain
AL539_RS14855	PF00152	tRNA synthetases class II (D, K and N)
AL539_RS14855	PF01336	OB-fold nucleic acid binding domain
AL539_RS14860	PF00158	Sigma-54 interaction domain
AL539_RS14860	PF02954	Bacterial regulatory protein, Fis family
AL539_RS14870	PF00248	Aldo/keto reductase family
AL539_RS14880	PF02976	DNA mismatch repair enzyme MutH
AL539_RS14885	PF00293	NUDIX domain
AL539_RS14890	PF00391	PEP-utilising enzyme, mobile domain
AL539_RS14890	PF01590	GAF domain
AL539_RS14890	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_RS14890	PF05524	PEP-utilising enzyme, N-terminal
AL539_RS14895	PF01925	AL539_RS14895
AL539_RS14900	PF01790	AL539_RS14900
AL539_RS14905	PF00303	Thymidylate synthase
AL539_RS14910	PF08014	AL539_RS14910
AL539_RS14915	PF02690	AL539_RS14915
AL539_RS14920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS14920	PF03466	LysR substrate binding domain
AL539_RS14925	PF01022	Bacterial regulatory protein, arsR family
AL539_RS14930	PF01649	Ribosomal protein S20
AL539_RS14935	PF03023	AL539_RS14935
AL539_RS14940	PF01687	Riboflavin kinase
AL539_RS14940	PF06574	FAD synthetase
AL539_RS14945	PF00133	tRNA synthetases class I (I, L, M and V)
AL539_RS14945	PF06827	Zinc finger found in FPG and IleRS
AL539_RS14945	PF08264	Anticodon-binding domain of tRNA
AL539_RS14950	PF01252	AL539_RS14950
AL539_RS14955	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_RS14960	PF02401	LytB protein
AL539_RS14965	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL539_RS14970	PF00072	Response regulator receiver domain
AL539_RS14970	PF04397	LytTr DNA-binding domain
AL539_RS14975	PF06580	AL539_RS14975
AL539_RS14975	PF07694	5TMR of 5TMR-LYT
AL539_RS14975	PF13492	GAF domain
AL539_RS14980	PF02554	AL539_RS14980
AL539_RS14980	PF13722	AL539_RS14980
AL539_RS14985	PF10973	AL539_RS14985
AL539_RS14995	PF13580	SIS domain
AL539_RS15000	PF03702	Uncharacterised protein family (UPF0075)
AL539_RS15005	PF00933	Glycosyl hydrolase family 3 N terminal domain
AL539_RS15010	PF00793	DAHP synthetase I family
AL539_RS15015	PF01817	Chorismate mutase type II
AL539_RS15015	PF02153	Prephenate dehydrogenase
AL539_RS15020	PF01551	Peptidase family M23
AL539_RS15025	PF07238	PilZ domain
AL539_RS15030	PF00005	ABC transporter
AL539_RS15030	PF12848	ABC transporter
AL539_RS15035	PF01464	Transglycosylase SLT domain
AL539_RS15035	PF14718	Soluble lytic murein transglycosylase L domain
AL539_RS15040	PF01371	Trp repressor protein
AL539_RS15045	PF01931	Protein of unknown function DUF84
AL539_RS15050	PF00800	Prephenate dehydratase
AL539_RS15050	PF01817	Chorismate mutase type II
AL539_RS15055	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL539_RS15060	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS15060	PF01464	Transglycosylase SLT domain
AL539_RS15065	PF13525	Outer membrane lipoprotein
AL539_RS15070	PF00849	RNA pseudouridylate synthase
AL539_RS15070	PF01479	S4 domain
AL539_RS15075	PF02578	Multi-copper polyphenol oxidoreductase laccase
AL539_RS15080	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS15080	PF02861	Clp amino terminal domain
AL539_RS15080	PF07724	AAA domain (Cdc48 subfamily)
AL539_RS15080	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_RS15125	PF08921	Domain of unknown function (DUF1904)
AL539_RS15130	PF03411	Penicillin-insensitive murein endopeptidase
AL539_RS15145	PF00037	4Fe-4S binding domain
AL539_RS15150	PF01136	AL539_RS15150
AL539_RS15150	PF16325	AL539_RS15150
AL539_RS15155	PF04381	Putative exonuclease, RdgC
AL539_RS15165	PF00072	Response regulator receiver domain
AL539_RS15165	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS15170	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS15170	PF00989	PAS fold
AL539_RS15170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS15170	PF11808	AL539_RS15170
AL539_RS15175	PF12849	PBP superfamily domain
AL539_RS15180	PF02541	Ppx/GppA phosphatase family
AL539_RS15185	PF02503	Polyphosphate kinase middle domain
AL539_RS15185	PF13089	Polyphosphate kinase N-terminal domain
AL539_RS15185	PF13090	Polyphosphate kinase C-terminal domain
AL539_RS15190	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS15195	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS15200	PF00005	ABC transporter
AL539_RS15205	PF01895	PhoU domain
AL539_RS15210	PF03976	Polyphosphate kinase 2 (PPK2)
AL539_RS15215	PF03932	CutC family
AL539_RS15220	PF00578	AhpC/TSA family
AL539_RS15220	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL539_RS15225	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS15225	PF03466	LysR substrate binding domain
AL539_RS15230	PF01274	Malate synthase
AL539_RS15235	PF00463	Isocitrate lyase family
AL539_RS15240	PF00571	CBS domain
AL539_RS15245	PF00089	Trypsin
AL539_RS15250	PF02547	Queuosine biosynthesis protein
AL539_RS15255	PF01702	Queuine tRNA-ribosyltransferase
AL539_RS15260	PF02699	Preprotein translocase subunit
AL539_RS15265	PF02355	Protein export membrane protein
AL539_RS15265	PF07549	SecD/SecF GG Motif
AL539_RS15265	PF13721	SecD export protein N-terminal TM region
AL539_RS15270	PF02355	Protein export membrane protein
AL539_RS15270	PF07549	SecD/SecF GG Motif
AL539_RS15285	PF00459	Inositol monophosphatase family
AL539_RS15290	PF00588	SpoU rRNA Methylase family
AL539_RS15295	PF02082	Transcriptional regulator
AL539_RS15300	PF00266	Aminotransferase class-V
AL539_RS15305	PF01592	NifU-like N terminal domain
AL539_RS15310	PF01521	Iron-sulphur cluster biosynthesis
AL539_RS15315	PF00226	DnaJ domain
AL539_RS15315	PF07743	HSCB C-terminal oligomerisation domain
AL539_RS15320	PF00012	Hsp70 protein
AL539_RS15325	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS15330	PF04384	Iron-sulphur cluster assembly
AL539_RS15335	PF00883	Cytosol aminopeptidase family, catalytic domain
AL539_RS15335	PF12404	AL539_RS15335
AL539_RS15340	PF00334	Nucleoside diphosphate kinase
AL539_RS15345	PF04055	Radical SAM superfamily
AL539_RS15350	PF13413	Helix-turn-helix domain
AL539_RS15350	PF13464	AL539_RS15350
AL539_RS15355	PF04551	GcpE protein
AL539_RS15360	PF03129	Anticodon binding domain
AL539_RS15360	PF13393	Histidyl-tRNA synthetase
AL539_RS15365	PF09976	Tetratricopeptide repeat
AL539_RS15370	PF13360	PQQ-like domain
AL539_RS15375	PF01926	50S ribosome-binding GTPase
AL539_RS15375	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AL539_RS15385	PF07191	zinc-ribbons
AL539_RS15390	PF02601	AL539_RS15390
AL539_RS15390	PF13742	AL539_RS15390
AL539_RS15395	PF00478	IMP dehydrogenase / GMP reductase domain
AL539_RS15395	PF00571	CBS domain
AL539_RS15400	PF00117	Glutamine amidotransferase class-I
AL539_RS15400	PF00958	GMP synthase C terminal domain
AL539_RS15400	PF02540	NAD synthase
AL539_RS15405	PF03553	AL539_RS15405
AL539_RS15410	PF00182	Chitinase class I
AL539_RS15415	PF01184	AL539_RS15415
AL539_RS15420	PF01235	AL539_RS15420
AL539_RS15425	PF01266	FAD dependent oxidoreductase
AL539_RS15430	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS15430	PF03466	LysR substrate binding domain
AL539_RS15435	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL539_RS15440	PF00202	Aminotransferase class-III
AL539_RS15445	PF05853	Prokaryotic protein of unknown function (DUF849)
AL539_RS15450	PF03553	AL539_RS15450
AL539_RS15455	PF09335	AL539_RS15455
AL539_RS15460	PF00583	Acetyltransferase (GNAT) family
AL539_RS15460	PF00795	Carbon-nitrogen hydrolase
AL539_RS15465	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS15465	PF03466	LysR substrate binding domain
AL539_RS15470	PF13505	Outer membrane protein beta-barrel domain
AL539_RS15475	PF01764	Lipase (class 3)
AL539_RS15485	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL539_RS15490	PF09952	AL539_RS15490
AL539_RS15495	PF00149	Calcineurin-like phosphoesterase
AL539_RS15505	PF11140	AL539_RS15505
AL539_RS15510	PF00563	EAL domain
AL539_RS15515	PF00563	EAL domain
AL539_RS15515	PF00990	GGDEF domain
AL539_RS15520	PF12833	Helix-turn-helix domain
AL539_RS15525	PF00563	EAL domain
AL539_RS15535	PF13276	AL539_RS15535
AL539_RS15540	PF00665	Integrase core domain
AL539_RS15545	PF00990	GGDEF domain
AL539_RS15550	PF01381	Helix-turn-helix
AL539_RS15550	PF07883	Cupin domain
AL539_RS15555	PF03483	B3/4 domain
AL539_RS15565	PF00589	Phage integrase family
AL539_RS15585	PF07804	HipA-like C-terminal domain
AL539_RS15585	PF13657	HipA N-terminal domain
AL539_RS15605	PF13737	AL539_RS15605
AL539_RS15645	PF00239	Resolvase, N terminal domain
AL539_RS15650	PF01863	Protein of unknown function DUF45
AL539_RS15655	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_RS15655	PF04851	Type III restriction enzyme, res subunit
AL539_RS15655	PF11867	AL539_RS15655
AL539_RS15660	PF01420	Type I restriction modification DNA specificity domain
AL539_RS15665	PF02384	N-6 DNA Methylase
AL539_RS15665	PF12161	HsdM N-terminal domain
AL539_RS15675	PF02384	N-6 DNA Methylase
AL539_RS15680	PF01420	Type I restriction modification DNA specificity domain
AL539_RS15690	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AL539_RS15700	PF00589	Phage integrase family
AL539_RS15700	PF13356	Domain of unknown function (DUF4102)
AL539_RS15700	PF14659	Phage integrase, N-terminal SAM-like domain
AL539_RS15710	PF01668	SmpB protein
AL539_RS15715	PF03364	Polyketide cyclase / dehydrase and lipid transport
AL539_RS15720	PF03658	RnfH family Ubiquitin
AL539_RS15725	PF04355	SmpA / OmlA family
AL539_RS15730	PF00583	Acetyltransferase (GNAT) family
AL539_RS15735	PF02463	RecF/RecN/SMC N terminal domain
AL539_RS15740	PF11301	AL539_RS15740
AL539_RS15745	PF01513	ATP-NAD kinase
AL539_RS15750	PF01025	GrpE
AL539_RS15755	PF00375	Sodium:dicarboxylate symporter family
AL539_RS15760	PF00012	Hsp70 protein
AL539_RS15765	PF00226	DnaJ domain
AL539_RS15765	PF00684	DnaJ central domain
AL539_RS15765	PF01556	DnaJ C terminal domain
AL539_RS15770	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS15770	PF16732	AL539_RS15770
AL539_RS15775	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS15775	PF12019	Type II transport protein GspH
AL539_RS15790	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS15795	PF03806	AL539_RS15795
AL539_RS15800	PF14437	AL539_RS15800
AL539_RS15810	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS15810	PF01464	Transglycosylase SLT domain
AL539_RS15815	PF02769	AIR synthase related protein, C-terminal domain
AL539_RS15815	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AL539_RS15820	PF12286	AL539_RS15820
AL539_RS15830	PF00593	TonB dependent receptor
AL539_RS15830	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS15835	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_RS15840	PF11810	AL539_RS15840
AL539_RS15845	PF01546	Peptidase family M20/M25/M40
AL539_RS15845	PF07687	Peptidase dimerisation domain
AL539_RS15850	PF00860	Permease family
AL539_RS15855	PF00156	Phosphoribosyl transferase domain
AL539_RS15860	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
AL539_RS15865	PF07417	Transcriptional regulator Crl
AL539_RS15870	PF00696	Amino acid kinase family
AL539_RS15870	PF01472	PUA domain
AL539_RS15875	PF00171	Aldehyde dehydrogenase family
AL539_RS15880	PF03477	ATP cone domain
AL539_RS15885	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_RS15885	PF01872	RibD C-terminal domain
AL539_RS15890	PF00677	Lumazine binding domain
AL539_RS15895	PF00925	GTP cyclohydrolase II
AL539_RS15895	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL539_RS15900	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AL539_RS15905	PF01029	NusB family
AL539_RS15910	PF00586	AIR synthase related protein, N-terminal domain
AL539_RS15910	PF02769	AIR synthase related protein, C-terminal domain
AL539_RS15915	PF04608	Phosphatidylglycerophosphatase A
AL539_RS15920	PF02779	Transketolase, pyrimidine binding domain
AL539_RS15920	PF02780	Transketolase, C-terminal domain
AL539_RS15920	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
AL539_RS15925	PF00348	Polyprenyl synthetase
AL539_RS15930	PF02609	Exonuclease VII small subunit
AL539_RS15935	PF01618	AL539_RS15935
AL539_RS15940	PF00691	OmpA family
AL539_RS15940	PF13677	AL539_RS15940
AL539_RS15945	PF02568	Thiamine biosynthesis protein (ThiI)
AL539_RS15945	PF02926	THUMP domain
AL539_RS15950	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS15950	PF03466	LysR substrate binding domain
AL539_RS15960	PF04241	AL539_RS15960
AL539_RS15965	PF01728	FtsJ-like methyltransferase
AL539_RS15970	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL539_RS15970	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL539_RS15975	PF03641	Possible lysine decarboxylase
AL539_RS15975	PF11892	Domain of unknown function (DUF3412)
AL539_RS15975	PF14793	Domain of unknown function (DUF4478)
AL539_RS15980	PF00990	GGDEF domain
AL539_RS15990	PF14489	QueF-like protein
AL539_RS15990	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
AL539_RS15995	PF07348	Syd protein (SUKH-2)
AL539_RS16000	PF10071	AL539_RS16000
AL539_RS16005	PF03180	NLPA lipoprotein
AL539_RS16010	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS16015	PF00005	ABC transporter
AL539_RS16015	PF09383	NIL domain
AL539_RS16020	PF13242	HAD-hyrolase-like
AL539_RS16025	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS16025	PF13377	Periplasmic binding protein-like domain
AL539_RS16030	PF00367	phosphotransferase system, EIIB
AL539_RS16030	PF02378	Phosphotransferase system, EIIC
AL539_RS16035	PF00128	Alpha amylase, catalytic domain
AL539_RS16035	PF16657	AL539_RS16035
AL539_RS16045	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS16050	PF02588	AL539_RS16050
AL539_RS16055	PF00464	Serine hydroxymethyltransferase
AL539_RS16060	PF04055	Radical SAM superfamily
AL539_RS16060	PF16881	AL539_RS16060
AL539_RS16065	PF03099	Biotin/lipoate A/B protein ligase family
AL539_RS16070	PF04359	Protein of unknown function (DUF493)
AL539_RS16075	PF00768	D-alanyl-D-alanine carboxypeptidase
AL539_RS16075	PF07943	Penicillin-binding protein 5, C-terminal domain
AL539_RS16080	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
AL539_RS16080	PF05036	Sporulation related domain
AL539_RS16085	PF01098	AL539_RS16085
AL539_RS16090	PF00905	Penicillin binding protein transpeptidase domain
AL539_RS16090	PF03717	Penicillin-binding Protein dimerisation domain
AL539_RS16095	PF02590	Predicted SPOUT methyltransferase
AL539_RS16100	PF02410	Oligomerisation domain
AL539_RS16105	PF06144	DNA polymerase III, delta subunit
AL539_RS16105	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
AL539_RS16110	PF04390	Lipopolysaccharide-assembly
AL539_RS16115	PF00133	tRNA synthetases class I (I, L, M and V)
AL539_RS16115	PF08264	Anticodon-binding domain of tRNA
AL539_RS16115	PF13603	Leucyl-tRNA synthetase, Domain 2
AL539_RS16120	PF07295	AL539_RS16120
AL539_RS16125	PF00795	Carbon-nitrogen hydrolase
AL539_RS16130	PF00571	CBS domain
AL539_RS16130	PF03471	Transporter associated domain
AL539_RS16135	PF02130	Uncharacterized protein family UPF0054
AL539_RS16140	PF02562	PhoH-like protein
AL539_RS16145	PF00919	Uncharacterized protein family UPF0004
AL539_RS16145	PF01938	TRAM domain
AL539_RS16145	PF04055	Radical SAM superfamily
AL539_RS16155	PF01494	FAD binding domain
AL539_RS16265	PF01926	50S ribosome-binding GTPase
AL539_RS16265	PF06071	Protein of unknown function (DUF933)
AL539_RS16270	PF01195	Peptidyl-tRNA hydrolase
AL539_RS16275	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AL539_RS16275	PF14572	Phosphoribosyl synthetase-associated domain
AL539_RS16280	PF00288	GHMP kinases N terminal domain
AL539_RS16280	PF08544	GHMP kinases C terminal
AL539_RS16285	PF03550	Outer membrane lipoprotein LolB
AL539_RS16290	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AL539_RS16290	PF01488	Shikimate / quinate 5-dehydrogenase
AL539_RS16290	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AL539_RS16295	PF00472	RF-1 domain
AL539_RS16295	PF03462	PCRF domain
AL539_RS16300	PF13847	Methyltransferase domain
AL539_RS16305	PF04247	AL539_RS16305
AL539_RS16310	PF13369	AL539_RS16310
AL539_RS16310	PF13371	Tetratricopeptide repeat
AL539_RS16315	PF00793	DAHP synthetase I family
AL539_RS16320	PF00149	Calcineurin-like phosphoesterase
AL539_RS16320	PF02872	5'-nucleotidase, C-terminal domain
AL539_RS16325	PF04073	Aminoacyl-tRNA editing domain
AL539_RS16330	PF00849	RNA pseudouridylate synthase
AL539_RS16330	PF01479	S4 domain
AL539_RS16335	PF01713	Smr domain
AL539_RS16340	PF11346	AL539_RS16340
AL539_RS16355	PF01963	AL539_RS16355
AL539_RS16360	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL539_RS16360	PF02838	Glycosyl hydrolase family 20, domain 2
AL539_RS16360	PF03173	Putative carbohydrate binding domain
AL539_RS16360	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AL539_RS16365	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AL539_RS16370	PF04214	AL539_RS16370
AL539_RS16375	PF00122	E1-E2 ATPase
AL539_RS16375	PF00403	Heavy-metal-associated domain
AL539_RS16375	PF00702	haloacid dehalogenase-like hydrolase
AL539_RS16385	PF13609	Gram-negative porin
AL539_RS16390	PF09829	AL539_RS16390
AL539_RS16395	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL539_RS16400	PF00691	OmpA family
AL539_RS16400	PF01389	OmpA-like transmembrane domain
AL539_RS16415	PF16538	AL539_RS16415
AL539_RS16415	PF16539	AL539_RS16415
AL539_RS16415	PF16548	AL539_RS16415
AL539_RS16425	PF02169	LPP20 lipoprotein
AL539_RS16430	PF05130	FlgN protein
AL539_RS16435	PF04316	Anti-sigma-28 factor, FlgM
AL539_RS16440	PF13144	SAF-like
AL539_RS16445	PF00072	Response regulator receiver domain
AL539_RS16445	PF01584	CheW-like domain
AL539_RS16450	PF01739	CheR methyltransferase, SAM binding domain
AL539_RS16450	PF03705	CheR methyltransferase, all-alpha domain
AL539_RS16460	PF00460	Flagella basal body rod protein
AL539_RS16460	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS16465	PF03963	AL539_RS16465
AL539_RS16465	PF13860	FlgD Ig-like domain
AL539_RS16465	PF13861	FlgD Tudor-like domain
AL539_RS16470	PF00460	Flagella basal body rod protein
AL539_RS16470	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS16470	PF07559	Flagellar basal body protein FlaE
AL539_RS16475	PF00460	Flagella basal body rod protein
AL539_RS16475	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS16480	PF00460	Flagella basal body rod protein
AL539_RS16480	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS16485	PF02107	AL539_RS16485
AL539_RS16490	PF02119	AL539_RS16490
AL539_RS16495	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL539_RS16495	PF10135	AL539_RS16495
AL539_RS16500	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS16505	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS16510	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS16510	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS16510	PF07196	Flagellin hook IN motif
AL539_RS16520	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS16520	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS16520	PF07196	Flagellin hook IN motif
AL539_RS16525	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS16525	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS16525	PF07196	Flagellin hook IN motif
AL539_RS16530	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL539_RS16535	PF00391	PEP-utilising enzyme, mobile domain
AL539_RS16535	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_RS16535	PF05524	PEP-utilising enzyme, N-terminal
AL539_RS16540	PF00381	PTS HPr component phosphorylation site
AL539_RS16550	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS16555	PF07264	Etoposide-induced protein 2
AL539_RS16560	PF04354	ZipA, C-terminal FtsZ-binding domain
AL539_RS16565	PF00533	BRCA1 C Terminus (BRCT) domain
AL539_RS16565	PF01653	NAD-dependent DNA ligase adenylation domain
AL539_RS16565	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AL539_RS16565	PF03120	NAD-dependent DNA ligase OB-fold domain
AL539_RS16565	PF12826	Helix-hairpin-helix motif
AL539_RS16565	PF14520	Helix-hairpin-helix domain
AL539_RS16580	PF01957	NfeD-like C-terminal, partner-binding
AL539_RS16585	PF01145	SPFH domain / Band 7 family
AL539_RS16585	PF16200	AL539_RS16585
AL539_RS16590	PF00085	Thioredoxin
AL539_RS16590	PF14559	Tetratricopeptide repeat
AL539_RS16590	PF14561	Tetratricopeptide repeat
AL539_RS16600	PF00106	short chain dehydrogenase
AL539_RS16605	PF01370	NAD dependent epimerase/dehydratase family
AL539_RS16605	PF08338	Domain of unknown function (DUF1731)
AL539_RS16610	PF07556	AL539_RS16610
AL539_RS16615	PF07556	AL539_RS16615
AL539_RS16625	PF00571	CBS domain
AL539_RS16635	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL539_RS16640	PF10262	Rdx family
AL539_RS16645	PF01925	AL539_RS16645
AL539_RS16650	PF17323	AL539_RS16650
AL539_RS16655	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS16660	PF00183	Hsp90 protein
AL539_RS16660	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS16665	PF00406	Adenylate kinase
AL539_RS16665	PF05191	Adenylate kinase, active site lid
AL539_RS16670	PF00762	Ferrochelatase
AL539_RS16675	PF00854	POT family
AL539_RS16680	PF02357	Transcription termination factor nusG
AL539_RS16685	PF00733	Asparagine synthase
AL539_RS16685	PF13537	Glutamine amidotransferase domain
AL539_RS16690	PF00999	Sodium/hydrogen exchanger family
AL539_RS16690	PF02254	TrkA-N domain
AL539_RS16695	PF00480	ROK family
AL539_RS16700	PF01979	Amidohydrolase family
AL539_RS16710	PF00367	phosphotransferase system, EIIB
AL539_RS16710	PF02378	Phosphotransferase system, EIIC
AL539_RS16715	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL539_RS16715	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AL539_RS16720	PF01475	Ferric uptake regulator family
AL539_RS16725	PF14539	Domain of unknown function (DUF4442)
AL539_RS16730	PF00258	Flavodoxin
AL539_RS16735	PF10981	AL539_RS16735
AL539_RS16740	PF12697	Alpha/beta hydrolase family
AL539_RS16745	PF03925	SeqA protein
AL539_RS16745	PF17206	AL539_RS16745
AL539_RS16750	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_RS16750	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_RS16750	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_RS16750	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_RS16755	PF08907	AL539_RS16755
AL539_RS16760	PF01784	NIF3 (NGG1p interacting factor 3)
AL539_RS16765	PF00285	Citrate synthase
AL539_RS16770	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AL539_RS16780	PF00890	FAD binding domain
AL539_RS16780	PF02910	Fumarate reductase flavoprotein C-term
AL539_RS16785	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL539_RS16785	PF13534	4Fe-4S dicluster domain
AL539_RS16790	PF00676	Dehydrogenase E1 component
AL539_RS16790	PF02779	Transketolase, pyrimidine binding domain
AL539_RS16790	PF16078	AL539_RS16790
AL539_RS16790	PF16870	AL539_RS16790
AL539_RS16795	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL539_RS16795	PF00364	Biotin-requiring enzyme
AL539_RS16795	PF02817	e3 binding domain
AL539_RS16800	PF00549	CoA-ligase
AL539_RS16800	PF08442	ATP-grasp domain
AL539_RS16805	PF00549	CoA-ligase
AL539_RS16805	PF02629	CoA binding domain
AL539_RS16810	PF00950	AL539_RS16810
AL539_RS16815	PF00005	ABC transporter
AL539_RS16820	PF01297	Periplasmic solute binding protein family
AL539_RS16825	PF12833	Helix-turn-helix domain
AL539_RS16830	PF04023	FeoA domain
AL539_RS16835	PF02421	Ferrous iron transport protein B
AL539_RS16835	PF07664	AL539_RS16835
AL539_RS16835	PF07670	Nucleoside recognition
AL539_RS16840	PF09012	FeoC like transcriptional regulator
AL539_RS16845	PF03350	AL539_RS16845
AL539_RS16850	PF01230	HIT domain
AL539_RS16855	PF00750	tRNA synthetases class I (R)
AL539_RS16855	PF03485	Arginyl tRNA synthetase N terminal domain
AL539_RS16855	PF05746	DALR anticodon binding domain
AL539_RS16865	PF06185	YecM protein
AL539_RS16870	PF00551	Formyl transferase
AL539_RS16870	PF01842	ACT domain
AL539_RS16875	PF04851	Type III restriction enzyme, res subunit
AL539_RS16875	PF13307	Helicase C-terminal domain
AL539_RS16880	PF00814	Glycoprotease family
AL539_RS16890	PF03843	AL539_RS16890
AL539_RS16895	PF00561	alpha/beta hydrolase fold
AL539_RS16900	PF00501	AMP-binding enzyme
AL539_RS16900	PF13193	AMP-binding enzyme C-terminal domain
AL539_RS16905	PF00570	HRDC domain
AL539_RS16905	PF01612	3'-5' exonuclease
AL539_RS16910	PF03776	Septum formation topological specificity factor MinE
AL539_RS16915	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL539_RS16920	PF03775	Septum formation inhibitor MinC, C-terminal domain
AL539_RS16920	PF05209	Septum formation inhibitor MinC, N-terminal domain
AL539_RS16925	PF05166	YcgL domain
AL539_RS16930	PF13406	Transglycosylase SLT domain
AL539_RS16935	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS16935	PF03466	LysR substrate binding domain
AL539_RS16940	PF01773	Na+ dependent nucleoside transporter N-terminus
AL539_RS16940	PF07662	Na+ dependent nucleoside transporter C-terminus
AL539_RS16940	PF07670	Nucleoside recognition
AL539_RS16945	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AL539_RS16945	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AL539_RS16955	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_RS16955	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_RS16960	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS16970	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_RS16970	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_RS16975	PF11659	AL539_RS16975
AL539_RS16980	PF03176	MMPL family
AL539_RS16985	PF03548	Outer membrane lipoprotein carrier protein LolA
AL539_RS16990	PF13279	Thioesterase-like superfamily
AL539_RS16995	PF00221	Aromatic amino acid lyase
AL539_RS17000	PF00535	Glycosyl transferase family 2
AL539_RS17000	PF03279	AL539_RS17000
AL539_RS17010	PF00501	AMP-binding enzyme
AL539_RS17010	PF13193	AMP-binding enzyme C-terminal domain
AL539_RS17015	PF04279	AL539_RS17015
AL539_RS17020	PF00550	Phosphopantetheine attachment site
AL539_RS17025	PF00550	Phosphopantetheine attachment site
AL539_RS17030	PF01553	Acyltransferase
AL539_RS17035	PF13723	AL539_RS17035
AL539_RS17050	PF01494	FAD binding domain
AL539_RS17055	PF01464	Transglycosylase SLT domain
AL539_RS17060	PF00270	DEAD/DEAH box helicase
AL539_RS17060	PF00271	Helicase conserved C-terminal domain
AL539_RS17065	PF02080	TrkA-C domain
AL539_RS17065	PF02254	TrkA-N domain
AL539_RS17070	PF02386	Cation transport protein
AL539_RS17075	PF05547	AL539_RS17075
AL539_RS17085	PF02696	AL539_RS17085
AL539_RS17090	PF03480	Bacterial extracellular solute-binding protein, family 7
AL539_RS17095	PF04290	AL539_RS17095
AL539_RS17100	PF06808	AL539_RS17100
AL539_RS17110	PF00072	Response regulator receiver domain
AL539_RS17110	PF00158	Sigma-54 interaction domain
AL539_RS17110	PF02954	Bacterial regulatory protein, Fis family
AL539_RS17115	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS17115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS17125	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_RS17125	PF05697	Bacterial trigger factor protein (TF)
AL539_RS17125	PF05698	Bacterial trigger factor protein (TF) C-terminus
AL539_RS17130	PF00574	Clp protease
AL539_RS17135	PF06689	ClpX C4-type zinc finger
AL539_RS17135	PF07724	AAA domain (Cdc48 subfamily)
AL539_RS17135	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_RS17140	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS17140	PF02190	ATP-dependent protease La (LON) domain
AL539_RS17140	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL539_RS17145	PF00216	Bacterial DNA-binding protein
AL539_RS17150	PF13616	PPIC-type PPIASE domain
AL539_RS17150	PF13624	SurA N-terminal domain
AL539_RS17155	PF12836	Helix-hairpin-helix motif
AL539_RS17160	PF01694	Rhomboid family
AL539_RS17165	PF03942	AL539_RS17165
AL539_RS17170	PF01966	HD domain
AL539_RS17170	PF13286	Phosphohydrolase-associated domain
AL539_RS17175	PF13023	HD domain
AL539_RS17180	PF00155	Aminotransferase class I and II
AL539_RS17185	PF00425	chorismate binding enzyme
AL539_RS17190	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_RS17190	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_RS17190	PF16582	AL539_RS17190
AL539_RS17195	PF12697	Alpha/beta hydrolase family
AL539_RS17200	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS17205	PF13378	Enolase C-terminal domain-like
AL539_RS17210	PF00501	AMP-binding enzyme
AL539_RS17220	PF03601	AL539_RS17220
AL539_RS17225	PF01553	Acyltransferase
AL539_RS17225	PF07690	Major Facilitator Superfamily
AL539_RS17230	PF13305	WHG domain
AL539_RS17235	PF04280	Tim44-like domain
AL539_RS17275	PF16576	AL539_RS17275
AL539_RS17280	PF00873	AcrB/AcrD/AcrF family
AL539_RS17285	PF13505	Outer membrane protein beta-barrel domain
AL539_RS17290	PF06844	Protein of unknown function (DUF1244)
AL539_RS17295	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS17300	PF01037	AsnC family
AL539_RS17300	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS17310	PF13622	Thioesterase-like superfamily
AL539_RS17315	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL539_RS17320	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL539_RS17330	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS17330	PF00990	GGDEF domain
AL539_RS17340	PF00588	SpoU rRNA Methylase family
AL539_RS17345	PF00571	CBS domain
AL539_RS17350	PF00122	E1-E2 ATPase
AL539_RS17350	PF00403	Heavy-metal-associated domain
AL539_RS17350	PF00702	haloacid dehalogenase-like hydrolase
AL539_RS17355	PF01048	Phosphorylase superfamily
AL539_RS17360	PF09002	Domain of unknown function (DUF1887)
AL539_RS17365	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS17370	PF01230	HIT domain
AL539_RS17380	PF07233	Protein of unknown function (DUF1425)
AL539_RS17385	PF13036	Protein of unknown function (DUF3897)
AL539_RS17390	PF01636	Phosphotransferase enzyme family
AL539_RS17395	PF05728	Uncharacterised protein family (UPF0227)
AL539_RS17400	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS17405	PF13302	Acetyltransferase (GNAT) domain
AL539_RS17410	PF10972	AL539_RS17410
AL539_RS17415	PF00270	DEAD/DEAH box helicase
AL539_RS17415	PF00271	Helicase conserved C-terminal domain
AL539_RS17415	PF02559	CarD-like/TRCF domain
AL539_RS17415	PF03461	TRCF domain
AL539_RS17425	PF02687	AL539_RS17425
AL539_RS17425	PF12704	MacB-like periplasmic core domain
AL539_RS17430	PF00005	ABC transporter
AL539_RS17435	PF02687	AL539_RS17435
AL539_RS17435	PF12704	MacB-like periplasmic core domain
AL539_RS17440	PF09835	AL539_RS17440
AL539_RS17445	PF00753	Metallo-beta-lactamase superfamily
AL539_RS17445	PF03772	AL539_RS17445
AL539_RS17450	PF00005	ABC transporter
AL539_RS17450	PF00664	ABC transporter transmembrane region
AL539_RS17455	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
AL539_RS17460	PF03966	Trm112p-like protein
AL539_RS17465	PF02348	Cytidylyltransferase
AL539_RS17470	PF04293	AL539_RS17470
AL539_RS17475	PF04285	AL539_RS17475
AL539_RS17480	PF06798	AL539_RS17480
AL539_RS17480	PF08298	PrkA AAA domain
AL539_RS17490	PF03887	YfbU domain
AL539_RS17495	PF01891	Cobalt uptake substrate-specific transmembrane region
AL539_RS17500	PF04055	Radical SAM superfamily
AL539_RS17500	PF13353	4Fe-4S single cluster domain
AL539_RS17505	PF09982	Uncharacterized protein conserved in bacteria (DUF2219)
AL539_RS17510	PF01228	Glycine radical
AL539_RS17510	PF02901	Pyruvate formate lyase
AL539_RS17515	PF11840	AL539_RS17515
AL539_RS17530	PF00005	ABC transporter
AL539_RS17535	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS17540	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS17545	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS17550	PF17291	AL539_RS17550
AL539_RS17555	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS17560	PF10689	AL539_RS17560
AL539_RS17565	PF07445	Primosomal replication protein priB and priC
AL539_RS17570	PF01925	AL539_RS17570
AL539_RS17575	PF04851	Type III restriction enzyme, res subunit
AL539_RS17575	PF13307	Helicase C-terminal domain
AL539_RS17580	PF13609	Gram-negative porin
AL539_RS17585	PF09829	AL539_RS17585
AL539_RS17590	PF00849	RNA pseudouridylate synthase
AL539_RS17595	PF03971	Monomeric isocitrate dehydrogenase
AL539_RS17600	PF00313	'Cold-shock' DNA-binding domain
AL539_RS17605	PF02617	ATP-dependent Clp protease adaptor protein ClpS
AL539_RS17610	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS17610	PF02861	Clp amino terminal domain
AL539_RS17610	PF07724	AAA domain (Cdc48 subfamily)
AL539_RS17610	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_RS17615	PF01176	Translation initiation factor 1A / IF-1
AL539_RS17620	PF04376	AL539_RS17620
AL539_RS17620	PF04377	AL539_RS17620
AL539_RS17625	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
AL539_RS17630	PF05433	AL539_RS17630
AL539_RS17635	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL539_RS17640	PF10692	Protein of unknown function (DUF2498)
AL539_RS17645	PF01131	DNA topoisomerase
AL539_RS17645	PF01396	AL539_RS17645
AL539_RS17645	PF01751	Toprim domain
AL539_RS17645	PF08272	Topoisomerase I zinc-ribbon-like
AL539_RS17650	PF00483	Nucleotidyl transferase
AL539_RS17655	PF00534	Glycosyl transferases group 1
AL539_RS17655	PF08323	Starch synthase catalytic domain
AL539_RS17660	PF00561	alpha/beta hydrolase fold
AL539_RS17665	PF09413	Domain of unknown function (DUF2007)
AL539_RS17670	PF09335	AL539_RS17670
AL539_RS17675	PF04993	TfoX N-terminal domain
AL539_RS17675	PF04994	TfoX C-terminal domain
AL539_RS17680	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS17680	PF13377	Periplasmic binding protein-like domain
AL539_RS17685	PF02613	Nitrate reductase delta subunit
AL539_RS17690	PF00072	Response regulator receiver domain
AL539_RS17690	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS17695	PF02698	DUF218 domain
AL539_RS17700	PF08241	Methyltransferase domain
AL539_RS17705	PF03882	KicB killing factor
AL539_RS17705	PF17192	AL539_RS17705
AL539_RS17705	PF17193	AL539_RS17705
AL539_RS17710	PF04288	MukE-like family
AL539_RS17715	PF04310	MukB N-terminal
AL539_RS17715	PF13558	Putative exonuclease SbcCD, C subunit
AL539_RS17715	PF16330	AL539_RS17715
AL539_RS17725	PF14397	AL539_RS17725
AL539_RS17730	PF14400	AL539_RS17730
AL539_RS17730	PF14402	AL539_RS17730
AL539_RS17735	PF05618	Putative ATP-dependant zinc protease
AL539_RS17745	PF08003	Protein of unknown function (DUF1698)
AL539_RS17750	PF13649	Methyltransferase domain
AL539_RS17755	PF01904	Protein of unknown function DUF72
AL539_RS17760	PF00152	tRNA synthetases class II (D, K and N)
AL539_RS17760	PF01336	OB-fold nucleic acid binding domain
AL539_RS17760	PF02938	GAD domain
AL539_RS17765	PF01709	Transcriptional regulator
AL539_RS17770	PF02075	Crossover junction endodeoxyribonuclease RuvC
AL539_RS17775	PF01330	RuvA N terminal domain
AL539_RS17775	PF07499	RuvA, C-terminal domain
AL539_RS17775	PF14520	Helix-hairpin-helix domain
AL539_RS17780	PF05491	Holliday junction DNA helicase ruvB C-terminus
AL539_RS17780	PF05496	Holliday junction DNA helicase ruvB N-terminus
AL539_RS17785	PF01654	AL539_RS17785
AL539_RS17790	PF02322	AL539_RS17790
AL539_RS17795	PF08173	AL539_RS17795
AL539_RS17800	PF09600	AL539_RS17800
AL539_RS17805	PF03061	Thioesterase superfamily
AL539_RS17810	PF01618	AL539_RS17810
AL539_RS17815	PF02472	Biopolymer transport protein ExbD/TolR
AL539_RS17820	PF06519	TolA C-terminal
AL539_RS17825	PF04052	TolB amino-terminal domain
AL539_RS17825	PF07676	WD40-like Beta Propeller Repeat
AL539_RS17830	PF00691	OmpA family
AL539_RS17835	PF13174	Tetratricopeptide repeat
AL539_RS17835	PF13432	Tetratricopeptide repeat
AL539_RS17835	PF16331	AL539_RS17835
AL539_RS17840	PF02445	Quinolinate synthetase A protein
AL539_RS17845	PF07885	Ion channel
AL539_RS17850	PF03994	AL539_RS17850
AL539_RS17855	PF06693	AL539_RS17855
AL539_RS17860	PF03738	Glutathionylspermidine synthase preATP-grasp
AL539_RS17865	PF03695	Uncharacterised protein family (UPF0149)
AL539_RS17870	PF05936	AL539_RS17870
AL539_RS17875	PF00691	OmpA family
AL539_RS17875	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL539_RS17880	PF06744	AL539_RS17880
AL539_RS17880	PF06761	AL539_RS17880
AL539_RS17880	PF14331	AL539_RS17880
AL539_RS17885	PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
AL539_RS17890	PF13672	Protein phosphatase 2C
AL539_RS17895	PF06812	AL539_RS17895
AL539_RS17900	PF05591	AL539_RS17900
AL539_RS17905	PF05943	AL539_RS17905
AL539_RS17910	PF05943	AL539_RS17910
AL539_RS17915	PF07024	ImpE protein
AL539_RS17920	PF04965	Gene 25-like lysozyme
AL539_RS17925	PF05947	AL539_RS17925
AL539_RS17930	PF06996	AL539_RS17930
AL539_RS17935	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS17935	PF07724	AAA domain (Cdc48 subfamily)
AL539_RS17935	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_RS17940	PF05638	Protein of unknown function (DUF796)
AL539_RS17945	PF05954	Phage late control gene D protein (GPD)
AL539_RS17950	PF05488	PAAR motif
AL539_RS17960	PF00149	Calcineurin-like phosphoesterase
AL539_RS17960	PF12320	Type 5 capsule protein repressor C-terminal domain
AL539_RS17965	PF13476	AAA domain
AL539_RS17965	PF13558	Putative exonuclease SbcCD, C subunit
AL539_RS17970	PF00031	Cystatin domain
AL539_RS17975	PF08212	Lipocalin-like domain
AL539_RS17980	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_RS17985	PF03606	AL539_RS17985
AL539_RS17990	PF00034	Cytochrome c
AL539_RS17995	PF01212	Beta-eliminating lyase
AL539_RS18000	PF00293	NUDIX domain
AL539_RS18005	PF07728	AAA domain (dynein-related subfamily)
AL539_RS18005	PF12592	Protein of unknown function (DUF3763)
AL539_RS18010	PF05762	VWA domain containing CoxE-like protein
AL539_RS18025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS18025	PF03466	LysR substrate binding domain
AL539_RS18030	PF01565	FAD binding domain
AL539_RS18030	PF09330	D-lactate dehydrogenase, membrane binding
AL539_RS18035	PF05437	AL539_RS18035
AL539_RS18040	PF03591	AL539_RS18040
AL539_RS18045	PF00842	Alanine racemase, C-terminal domain
AL539_RS18045	PF01168	Alanine racemase, N-terminal domain
AL539_RS18050	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS18050	PF12729	AL539_RS18050
AL539_RS18065	PF00128	Alpha amylase, catalytic domain
AL539_RS18075	PF01764	Lipase (class 3)
AL539_RS18080	PF05235	CHAD domain
AL539_RS18100	PF00296	Luciferase-like monooxygenase
AL539_RS18105	PF00990	GGDEF domain
AL539_RS18110	PF09084	NMT1/THI5 like
AL539_RS18115	PF00990	GGDEF domain
AL539_RS18115	PF08447	PAS fold
AL539_RS18125	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_RS18125	PF14760	Rnk N-terminus
AL539_RS18130	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL539_RS18130	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL539_RS18130	PF04324	BFD-like [2Fe-2S] binding domain
AL539_RS18130	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS18135	PF13806	Rieske-like [2Fe-2S] domain
AL539_RS18140	PF01226	Formate/nitrite transporter
AL539_RS18145	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_RS18150	PF13778	AL539_RS18150
AL539_RS18155	PF01936	NYN domain
AL539_RS18160	PF03605	AL539_RS18160
AL539_RS18170	PF11575	AL539_RS18170
AL539_RS18175	PF00593	TonB dependent receptor
AL539_RS18175	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS18180	PF11661	AL539_RS18180
AL539_RS18185	PF13302	Acetyltransferase (GNAT) domain
AL539_RS18190	PF11756	AL539_RS18190
AL539_RS18195	PF07690	Major Facilitator Superfamily
AL539_RS18200	PF00085	Thioredoxin
AL539_RS18205	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL539_RS18205	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL539_RS18210	PF07394	AL539_RS18210
AL539_RS18215	PF08811	AL539_RS18215
AL539_RS18220	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AL539_RS18225	PF01238	Phosphomannose isomerase type I
AL539_RS18230	PF07690	Major Facilitator Superfamily
AL539_RS18235	PF05231	AL539_RS18235
AL539_RS18235	PF07730	Histidine kinase
AL539_RS18240	PF00072	Response regulator receiver domain
AL539_RS18240	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS18245	PF07690	Major Facilitator Superfamily
AL539_RS18250	PF02634	FdhD/NarQ family
AL539_RS18255	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS18255	PF03466	LysR substrate binding domain
AL539_RS18265	PF00384	Molybdopterin oxidoreductase
AL539_RS18265	PF01568	Molydopterin dinucleotide binding domain
AL539_RS18270	PF10517	AL539_RS18270
AL539_RS18275	PF04224	AL539_RS18275
AL539_RS18280	PF02567	Phenazine biosynthesis-like protein
AL539_RS18285	PF01177	Asp/Glu/Hydantoin racemase
AL539_RS18290	PF00581	Rhodanese-like domain
AL539_RS18290	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_RS18290	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS18295	PF01022	Bacterial regulatory protein, arsR family
AL539_RS18300	PF04143	AL539_RS18300
AL539_RS18310	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS18320	PF03477	ATP cone domain
AL539_RS18320	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AL539_RS18325	PF13353	4Fe-4S single cluster domain
AL539_RS18330	PF01554	MatE
AL539_RS18335	PF02311	AraC-like ligand binding domain
AL539_RS18335	PF12833	Helix-turn-helix domain
AL539_RS18340	PF00155	Aminotransferase class I and II
AL539_RS18345	PF05618	Putative ATP-dependant zinc protease
AL539_RS18355	PF04076	Bacterial OB fold (BOF) protein
AL539_RS18360	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AL539_RS18360	PF13500	AAA domain
AL539_RS18365	PF13531	Bacterial extracellular solute-binding protein
AL539_RS18370	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS18375	PF00005	ABC transporter
AL539_RS18375	PF03459	TOBE domain
AL539_RS18380	PF11269	Protein of unknown function (DUF3069)
AL539_RS18385	PF00072	Response regulator receiver domain
AL539_RS18385	PF00990	GGDEF domain
AL539_RS18390	PF00990	GGDEF domain
AL539_RS18395	PF10719	AL539_RS18395
AL539_RS18400	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AL539_RS18405	PF13358	DDE superfamily endonuclease
AL539_RS18405	PF13565	AL539_RS18405
AL539_RS18415	PF10115	AL539_RS18415
AL539_RS18420	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL539_RS18420	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL539_RS18420	PF12769	Domain of unknown function (DUF3814)
AL539_RS18425	PF02233	NAD(P) transhydrogenase beta subunit
AL539_RS18430	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS18430	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS18430	PF11884	Domain of unknown function (DUF3404)
AL539_RS18435	PF00072	Response regulator receiver domain
AL539_RS18435	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS18440	PF11060	AL539_RS18440
AL539_RS18445	PF13729	AL539_RS18445
AL539_RS18450	PF03701	AL539_RS18450
AL539_RS18455	PF00582	Universal stress protein family
AL539_RS18465	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS18465	PF03466	LysR substrate binding domain
AL539_RS18485	PF01253	Translation initiation factor SUI1
AL539_RS18490	PF11782	AL539_RS18490
AL539_RS18495	PF01820	D-ala D-ala ligase N-terminus
AL539_RS18495	PF07478	D-ala D-ala ligase C-terminus
AL539_RS18500	PF05036	Sporulation related domain
AL539_RS18505	PF00583	Acetyltransferase (GNAT) family
AL539_RS18505	PF13380	CoA binding domain
AL539_RS18505	PF13549	ATP-grasp domain
AL539_RS18505	PF13607	Succinyl-CoA ligase like flavodoxin domain
AL539_RS18510	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS18510	PF03466	LysR substrate binding domain
AL539_RS18515	PF00593	TonB dependent receptor
AL539_RS18515	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS18525	PF16363	AL539_RS18525
AL539_RS18530	PF00672	HAMP domain
AL539_RS18530	PF00989	PAS fold
AL539_RS18530	PF00990	GGDEF domain
AL539_RS18530	PF13426	PAS domain
AL539_RS18530	PF17152	AL539_RS18530
AL539_RS18535	PF03746	LamB/YcsF family
AL539_RS18540	PF02682	Allophanate hydrolase subunit 1
AL539_RS18545	PF02626	Allophanate hydrolase subunit 2
AL539_RS18550	PF01266	FAD dependent oxidoreductase
AL539_RS18560	PF00005	ABC transporter
AL539_RS18565	PF13472	GDSL-like Lipase/Acylhydrolase family
AL539_RS18570	PF07055	Enoyl reductase FAD binding domain
AL539_RS18570	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL539_RS18570	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL539_RS18575	PF00563	EAL domain
AL539_RS18575	PF00990	GGDEF domain
AL539_RS18575	PF13185	GAF domain
AL539_RS18580	PF09818	Predicted ATPase of the ABC class
AL539_RS18585	PF00226	DnaJ domain
AL539_RS18585	PF12339	AL539_RS18585
AL539_RS18590	PF03171	2OG-Fe(II) oxygenase superfamily
AL539_RS18590	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
AL539_RS18595	PF09997	AL539_RS18595
AL539_RS18600	PF03091	CutA1 divalent ion tolerance protein
AL539_RS18610	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS18610	PF12793	AL539_RS18610
AL539_RS18615	PF11869	AL539_RS18615
AL539_RS18620	PF03061	Thioesterase superfamily
AL539_RS18625	PF01435	Peptidase family M48
AL539_RS18635	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_RS18640	PF12262	AL539_RS18640
AL539_RS18645	PF06004	Bacterial protein of unknown function (DUF903)
AL539_RS18650	PF03831	PhnA protein
AL539_RS18650	PF08274	PhnA Zinc-Ribbon
AL539_RS18660	PF03741	AL539_RS18660
AL539_RS18665	PF00149	Calcineurin-like phosphoesterase
AL539_RS18665	PF02872	5'-nucleotidase, C-terminal domain
AL539_RS18670	PF11398	Protein of unknown function (DUF2813)
AL539_RS18675	PF06496	AL539_RS18675
AL539_RS18680	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS18680	PF03466	LysR substrate binding domain
AL539_RS18685	PF00571	CBS domain
AL539_RS18685	PF01226	Formate/nitrite transporter
AL539_RS18690	PF04264	YceI-like domain
AL539_RS18695	PF01292	Prokaryotic cytochrome b561
AL539_RS18700	PF09932	AL539_RS18700
AL539_RS18710	PF00563	EAL domain
AL539_RS18715	PF00270	DEAD/DEAH box helicase
AL539_RS18715	PF00271	Helicase conserved C-terminal domain
AL539_RS18720	PF04336	AL539_RS18720
AL539_RS18730	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS18740	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS18750	PF05981	AL539_RS18750
AL539_RS18755	PF00294	pfkB family carbohydrate kinase
AL539_RS18760	PF01268	Formate--tetrahydrofolate ligase
AL539_RS18765	PF00483	Nucleotidyl transferase
AL539_RS18770	PF00704	Glycosyl hydrolases family 18
AL539_RS18770	PF06483	AL539_RS18770
AL539_RS18770	PF14600	Cellulose-binding domain
AL539_RS18780	PF06719	AL539_RS18780
AL539_RS18780	PF12833	Helix-turn-helix domain
AL539_RS18785	PF00465	Iron-containing alcohol dehydrogenase
AL539_RS18790	PF07947	AL539_RS18790
AL539_RS18795	PF00005	ABC transporter
AL539_RS18800	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS18805	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS18810	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS18815	PF00563	EAL domain
AL539_RS18820	PF13275	S4 domain
AL539_RS18825	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS18830	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS18830	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL539_RS18835	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS18835	PF00381	PTS HPr component phosphorylation site
AL539_RS18840	PF00294	pfkB family carbohydrate kinase
AL539_RS18845	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS18845	PF02378	Phosphotransferase system, EIIC
AL539_RS18855	PF00873	AcrB/AcrD/AcrF family
AL539_RS18860	PF13533	Biotin-lipoyl like
AL539_RS18865	PF16576	AL539_RS18865
AL539_RS18870	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS18875	PF01571	Aminomethyltransferase folate-binding domain
AL539_RS18875	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AL539_RS18880	PF01381	Helix-turn-helix
AL539_RS18880	PF07883	Cupin domain
AL539_RS18885	PF00464	Serine hydroxymethyltransferase
AL539_RS18890	PF01597	Glycine cleavage H-protein
AL539_RS18895	PF02347	Glycine cleavage system P-protein
AL539_RS18900	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS18910	PF00753	Metallo-beta-lactamase superfamily
AL539_RS18915	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS18915	PF03466	LysR substrate binding domain
AL539_RS18920	PF00892	EamA-like transporter family
AL539_RS18925	PF02627	Carboxymuconolactone decarboxylase family
AL539_RS18930	PF12833	Helix-turn-helix domain
AL539_RS18935	PF14317	AL539_RS18935
AL539_RS18940	PF16691	AL539_RS18940
AL539_RS18945	PF01212	Beta-eliminating lyase
AL539_RS18950	PF15575	AL539_RS18950
AL539_RS18955	PF00929	Exonuclease
AL539_RS18965	PF00005	ABC transporter
AL539_RS18965	PF00664	ABC transporter transmembrane region
AL539_RS18975	PF04307	AL539_RS18975
AL539_RS18985	PF02253	Phospholipase A1
AL539_RS18990	PF11158	AL539_RS18990
AL539_RS18995	PF01609	Transposase DDE domain
AL539_RS18995	PF14104	AL539_RS18995
AL539_RS19000	PF13411	MerR HTH family regulatory protein
AL539_RS19005	PF01327	Polypeptide deformylase
AL539_RS19030	PF13521	AAA domain
AL539_RS19040	PF01769	Divalent cation transporter
AL539_RS19040	PF03448	MgtE intracellular N domain
AL539_RS19045	PF00582	Universal stress protein family
AL539_RS19050	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL539_RS19055	PF03061	Thioesterase superfamily
AL539_RS19060	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS19065	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_RS19070	PF03206	AL539_RS19070
AL539_RS19075	PF01757	AL539_RS19075
AL539_RS19080	PF08808	AL539_RS19080
AL539_RS19085	PF09722	AL539_RS19085
AL539_RS19090	PF00141	Peroxidase
AL539_RS19095	PF01645	Conserved region in glutamate synthase
AL539_RS19095	PF09360	Iron-binding zinc finger CDGSH type
AL539_RS19100	PF04073	Aminoacyl-tRNA editing domain
AL539_RS19105	PF00171	Aldehyde dehydrogenase family
AL539_RS19110	PF13302	Acetyltransferase (GNAT) domain
AL539_RS19115	PF00293	NUDIX domain
AL539_RS19120	PF00892	EamA-like transporter family
AL539_RS19125	PF00893	Small Multidrug Resistance protein
AL539_RS19130	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_RS19140	PF01124	MAPEG family
AL539_RS19145	PF00892	EamA-like transporter family
AL539_RS19150	PF01925	AL539_RS19150
AL539_RS19155	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS19160	PF00072	Response regulator receiver domain
AL539_RS19160	PF01584	CheW-like domain
AL539_RS19170	PF00072	Response regulator receiver domain
AL539_RS19170	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS19175	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS19180	PF00990	GGDEF domain
AL539_RS19185	PF00072	Response regulator receiver domain
AL539_RS19185	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS19190	PF00072	Response regulator receiver domain
AL539_RS19190	PF00563	EAL domain
AL539_RS19195	PF00072	Response regulator receiver domain
AL539_RS19195	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS19195	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS19195	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS19200	PF01926	50S ribosome-binding GTPase
AL539_RS19205	PF00155	Aminotransferase class I and II
AL539_RS19210	PF00072	Response regulator receiver domain
AL539_RS19210	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS19215	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS19220	PF00583	Acetyltransferase (GNAT) family
AL539_RS19225	PF00487	AL539_RS19225
AL539_RS19230	PF03606	AL539_RS19230
AL539_RS19240	PF07690	Major Facilitator Superfamily
AL539_RS19245	PF08774	VRR-NUC domain
AL539_RS19250	PF13505	Outer membrane protein beta-barrel domain
AL539_RS19255	PF04076	Bacterial OB fold (BOF) protein
AL539_RS19260	PF00781	Diacylglycerol kinase catalytic domain
AL539_RS19265	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS19265	PF03466	LysR substrate binding domain
AL539_RS19270	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_RS19275	PF13584	AL539_RS19275
AL539_RS19280	PF13519	von Willebrand factor type A domain
AL539_RS19285	PF00092	von Willebrand factor type A domain
AL539_RS19290	PF14316	AL539_RS19290
AL539_RS19295	PF01882	AL539_RS19295
AL539_RS19300	PF07726	ATPase family associated with various cellular activities (AAA)
AL539_RS19305	PF04055	Radical SAM superfamily
AL539_RS19305	PF13186	Iron-sulfur cluster-binding domain
AL539_RS19310	PF00884	Sulfatase
AL539_RS19310	PF14707	C-terminal region of aryl-sulfatase
AL539_RS19315	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS19315	PF03466	LysR substrate binding domain
AL539_RS19320	PF00884	Sulfatase
AL539_RS19320	PF14707	C-terminal region of aryl-sulfatase
AL539_RS19325	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS19330	PF06934	AL539_RS19330
AL539_RS19340	PF00072	Response regulator receiver domain
AL539_RS19340	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS19340	PF01627	Hpt domain
AL539_RS19340	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS19345	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL539_RS19350	PF02142	MGS-like domain
AL539_RS19355	PF00580	UvrD/REP helicase N-terminal domain
AL539_RS19355	PF12462	AL539_RS19355
AL539_RS19355	PF13361	UvrD-like helicase C-terminal domain
AL539_RS19360	PF12805	AL539_RS19360
AL539_RS19360	PF13515	AL539_RS19360
AL539_RS19385	PF10688	AL539_RS19385
AL539_RS19390	PF09981	Uncharacterized protein conserved in bacteria (DUF2218)
AL539_RS19395	PF00593	TonB dependent receptor
AL539_RS19395	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS19405	PF13411	MerR HTH family regulatory protein
AL539_RS19410	PF00005	ABC transporter
AL539_RS19415	PF01032	FecCD transport family
AL539_RS19420	PF01032	FecCD transport family
AL539_RS19425	PF01497	Periplasmic binding protein
AL539_RS19430	PF00027	Cyclic nucleotide-binding domain
AL539_RS19435	PF01048	Phosphorylase superfamily
AL539_RS19440	PF04973	AL539_RS19440
AL539_RS19450	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS19450	PF13377	Periplasmic binding protein-like domain
AL539_RS19455	PF00294	pfkB family carbohydrate kinase
AL539_RS19460	PF13407	Periplasmic binding protein domain
AL539_RS19465	PF02653	AL539_RS19465
AL539_RS19470	PF00005	ABC transporter
AL539_RS19475	PF05025	RbsD / FucU transport protein family
AL539_RS19480	PF00563	EAL domain
AL539_RS19480	PF00990	GGDEF domain
AL539_RS19490	PF13645	AL539_RS19490
AL539_RS19505	PF09335	AL539_RS19505
AL539_RS19515	PF13590	Domain of unknown function (DUF4136)
AL539_RS19525	PF04116	AL539_RS19525
AL539_RS19530	PF10974	AL539_RS19530
AL539_RS19535	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL539_RS19535	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AL539_RS19540	PF02566	OsmC-like protein
AL539_RS19545	PF00072	Response regulator receiver domain
AL539_RS19545	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS19545	PF01627	Hpt domain
AL539_RS19545	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS19550	PF00034	Cytochrome c
AL539_RS19550	PF03150	Di-haem cytochrome c peroxidase
AL539_RS19555	PF01957	NfeD-like C-terminal, partner-binding
AL539_RS19560	PF01145	SPFH domain / Band 7 family
AL539_RS19570	PF00881	Nitroreductase family
AL539_RS19575	PF00005	ABC transporter
AL539_RS19580	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS19585	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL539_RS19590	PF00732	GMC oxidoreductase
AL539_RS19590	PF05199	GMC oxidoreductase
AL539_RS19595	PF00171	Aldehyde dehydrogenase family
AL539_RS19600	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS19600	PF13977	Bacterial transcriptional repressor
AL539_RS19605	PF00990	GGDEF domain
AL539_RS19610	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS19615	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_RS19615	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_RS19620	PF16113	AL539_RS19620
AL539_RS19625	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS19630	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_RS19630	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_RS19630	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_RS19635	PF00171	Aldehyde dehydrogenase family
AL539_RS19640	PF00108	Thiolase, N-terminal domain
AL539_RS19640	PF02803	Thiolase, C-terminal domain
AL539_RS19645	PF00376	MerR family regulatory protein
AL539_RS19645	PF09278	MerR, DNA binding
AL539_RS19650	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_RS19650	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_RS19650	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_RS19655	PF01039	Carboxyl transferase domain
AL539_RS19660	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS19665	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL539_RS19665	PF00364	Biotin-requiring enzyme
AL539_RS19665	PF02785	Biotin carboxylase C-terminal domain
AL539_RS19665	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL539_RS19670	PF00682	HMGL-like
AL539_RS19675	PF08895	AL539_RS19675
AL539_RS19680	PF00924	Mechanosensitive ion channel
AL539_RS19690	PF12464	Maltose acetyltransferase
AL539_RS19690	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_RS19695	PF00155	Aminotransferase class I and II
AL539_RS19695	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS19700	PF01654	AL539_RS19700
AL539_RS19705	PF02322	AL539_RS19705
AL539_RS19710	PF10617	AL539_RS19710
AL539_RS19720	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS19725	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS19725	PF03466	LysR substrate binding domain
AL539_RS19730	PF03306	Alpha-acetolactate decarboxylase
AL539_RS19735	PF00205	Thiamine pyrophosphate enzyme, central domain
AL539_RS19735	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_RS19735	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_RS19740	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS19745	PF02028	BCCT family transporter
AL539_RS19750	PF05724	Thiopurine S-methyltransferase (TPMT)
AL539_RS19775	PF05724	Thiopurine S-methyltransferase (TPMT)
AL539_RS19780	PF00501	AMP-binding enzyme
AL539_RS19785	PF00005	ABC transporter
AL539_RS19790	PF13458	Periplasmic binding protein
AL539_RS19795	PF02653	AL539_RS19795
AL539_RS19800	PF02653	AL539_RS19800
AL539_RS19805	PF00501	AMP-binding enzyme
AL539_RS19810	PF00005	ABC transporter
AL539_RS19810	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL539_RS19820	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL539_RS19820	PF13450	NAD(P)-binding Rossmann-like domain
AL539_RS19825	PF01012	Electron transfer flavoprotein domain
AL539_RS19830	PF00766	Electron transfer flavoprotein FAD-binding domain
AL539_RS19830	PF01012	Electron transfer flavoprotein domain
AL539_RS19835	PF00501	AMP-binding enzyme
AL539_RS19835	PF13193	AMP-binding enzyme C-terminal domain
AL539_RS19840	PF00367	phosphotransferase system, EIIB
AL539_RS19840	PF02378	Phosphotransferase system, EIIC
AL539_RS19845	PF02056	Family 4 glycosyl hydrolase
AL539_RS19845	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL539_RS19850	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS19850	PF07702	UTRA domain
AL539_RS19855	PF03334	AL539_RS19855
AL539_RS19860	PF04066	AL539_RS19860
AL539_RS19865	PF01899	AL539_RS19865
AL539_RS19870	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AL539_RS19875	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AL539_RS19880	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AL539_RS19880	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AL539_RS19880	PF04039	AL539_RS19880
AL539_RS19880	PF13244	AL539_RS19880
AL539_RS19890	PF00582	Universal stress protein family
AL539_RS19895	PF00106	short chain dehydrogenase
AL539_RS19900	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS19900	PF03466	LysR substrate binding domain
AL539_RS19905	PF02311	AraC-like ligand binding domain
AL539_RS19905	PF12833	Helix-turn-helix domain
AL539_RS19910	PF07690	Major Facilitator Superfamily
AL539_RS19925	PF13665	AL539_RS19925
AL539_RS19930	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL539_RS19935	PF05936	AL539_RS19935
AL539_RS19940	PF12790	Type VI secretion lipoprotein
AL539_RS19945	PF00498	FHA domain
AL539_RS19955	PF06812	AL539_RS19955
AL539_RS19960	PF06744	AL539_RS19960
AL539_RS19960	PF06761	AL539_RS19960
AL539_RS19960	PF14331	AL539_RS19960
AL539_RS19965	PF01037	AsnC family
AL539_RS19965	PF13404	AsnC-type helix-turn-helix domain
AL539_RS19970	PF06996	AL539_RS19970
AL539_RS19975	PF05947	AL539_RS19975
AL539_RS19980	PF04965	Gene 25-like lysozyme
AL539_RS19985	PF05943	AL539_RS19985
AL539_RS19990	PF05591	AL539_RS19990
AL539_RS19995	PF06812	AL539_RS19995
AL539_RS19995	PF16989	AL539_RS19995
AL539_RS20000	PF00069	Protein kinase domain
AL539_RS20010	PF09937	AL539_RS20010
AL539_RS20025	PF05954	Phage late control gene D protein (GPD)
AL539_RS20030	PF05638	Protein of unknown function (DUF796)
AL539_RS20035	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_RS20035	PF07724	AAA domain (Cdc48 subfamily)
AL539_RS20035	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_RS20040	PF00158	Sigma-54 interaction domain
AL539_RS20040	PF02954	Bacterial regulatory protein, Fis family
AL539_RS20040	PF13185	GAF domain
AL539_RS20045	PF00691	OmpA family
AL539_RS20065	PF01551	Peptidase family M23
AL539_RS20090	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS20090	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS20090	PF02378	Phosphotransferase system, EIIC
AL539_RS20095	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS20100	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS20105	PF12833	Helix-turn-helix domain
AL539_RS20110	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS20110	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS20110	PF02378	Phosphotransferase system, EIIC
AL539_RS20115	PF01238	Phosphomannose isomerase type I
AL539_RS20120	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_RS20125	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_RS20130	PF07971	Glycosyl hydrolase family 92
AL539_RS20135	PF07971	Glycosyl hydrolase family 92
AL539_RS20140	PF07971	Glycosyl hydrolase family 92
AL539_RS20145	PF07971	Glycosyl hydrolase family 92
AL539_RS20150	PF07971	Glycosyl hydrolase family 92
AL539_RS20175	PF00478	IMP dehydrogenase / GMP reductase domain
AL539_RS20180	PF01256	Carbohydrate kinase
AL539_RS20180	PF03853	YjeF-related protein N-terminus
AL539_RS20185	PF00989	PAS fold
AL539_RS20190	PF00072	Response regulator receiver domain
AL539_RS20195	PF00248	Aldo/keto reductase family
AL539_RS20210	PF00654	Voltage gated chloride channel
AL539_RS20215	PF03595	Voltage-dependent anion channel
AL539_RS20220	PF01227	GTP cyclohydrolase I
AL539_RS20225	PF00994	Probable molybdopterin binding domain
AL539_RS20225	PF03453	MoeA N-terminal region (domain I and II)
AL539_RS20225	PF03454	MoeA C-terminal region (domain IV)
AL539_RS20230	PF00899	ThiF family
AL539_RS20235	PF16130	AL539_RS20235
AL539_RS20245	PF00581	Rhodanese-like domain
AL539_RS20250	PF04198	Putative sugar-binding domain
AL539_RS20265	PF00923	Transaldolase
AL539_RS20270	PF00456	Transketolase, thiamine diphosphate binding domain
AL539_RS20270	PF02779	Transketolase, pyrimidine binding domain
AL539_RS20270	PF02780	Transketolase, C-terminal domain
AL539_RS20275	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS20275	PF08447	PAS fold
AL539_RS20280	PF07690	Major Facilitator Superfamily
AL539_RS20285	PF00793	DAHP synthetase I family
AL539_RS20295	PF00691	OmpA family
AL539_RS20295	PF13505	Outer membrane protein beta-barrel domain
AL539_RS20300	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS20305	PF00472	RF-1 domain
AL539_RS20310	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS20315	PF00873	AcrB/AcrD/AcrF family
AL539_RS20320	PF16576	AL539_RS20320
AL539_RS20325	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_RS20330	PF01546	Peptidase family M20/M25/M40
AL539_RS20330	PF07687	Peptidase dimerisation domain
AL539_RS20345	PF00072	Response regulator receiver domain
AL539_RS20345	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS20350	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS20350	PF07730	Histidine kinase
AL539_RS20350	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AL539_RS20355	PF12838	4Fe-4S dicluster domain
AL539_RS20360	PF03927	NapD protein
AL539_RS20365	PF00384	Molybdopterin oxidoreductase
AL539_RS20365	PF01568	Molydopterin dinucleotide binding domain
AL539_RS20365	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_RS20370	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AL539_RS20375	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL539_RS20380	PF09574	AL539_RS20380
AL539_RS20385	PF07167	AL539_RS20385
AL539_RS20390	PF09361	AL539_RS20390
AL539_RS20395	PF00108	Thiolase, N-terminal domain
AL539_RS20395	PF02803	Thiolase, C-terminal domain
AL539_RS20400	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS20405	PF01810	AL539_RS20405
AL539_RS20415	PF02355	Protein export membrane protein
AL539_RS20415	PF07549	SecD/SecF GG Motif
AL539_RS20420	PF02355	Protein export membrane protein
AL539_RS20420	PF07549	SecD/SecF GG Motif
AL539_RS20420	PF13721	SecD export protein N-terminal TM region
AL539_RS20430	PF08239	Bacterial SH3 domain
AL539_RS20445	PF13649	Methyltransferase domain
AL539_RS20450	PF01037	AsnC family
AL539_RS20450	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS20455	PF00892	EamA-like transporter family
AL539_RS20460	PF07238	PilZ domain
AL539_RS20460	PF12945	Flagellar protein YcgR
AL539_RS20465	PF11168	AL539_RS20465
AL539_RS20470	PF13437	HlyD family secretion protein
AL539_RS20470	PF13533	Biotin-lipoyl like
AL539_RS20475	PF01047	MarR family
AL539_RS20480	PF00072	Response regulator receiver domain
AL539_RS20480	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS20480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS20480	PF09308	LuxQ, periplasmic
AL539_RS20485	PF13407	Periplasmic binding protein domain
AL539_RS20495	PF01541	GIY-YIG catalytic domain
AL539_RS20500	PF04337	Protein of unknown function, DUF480
AL539_RS20510	PF04363	AL539_RS20510
AL539_RS20515	PF01554	MatE
AL539_RS20520	PF00072	Response regulator receiver domain
AL539_RS20520	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS20520	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS20525	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_RS20525	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_RS20540	PF01810	AL539_RS20540
AL539_RS20545	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS20545	PF03466	LysR substrate binding domain
AL539_RS20550	PF01037	AsnC family
AL539_RS20550	PF13404	AsnC-type helix-turn-helix domain
AL539_RS20560	PF13520	Amino acid permease
AL539_RS20565	PF00155	Aminotransferase class I and II
AL539_RS20565	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS20570	PF12900	Pyridoxamine 5'-phosphate oxidase
AL539_RS20575	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS20575	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS20580	PF00072	Response regulator receiver domain
AL539_RS20580	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS20600	PF12625	AL539_RS20600
AL539_RS20600	PF12833	Helix-turn-helix domain
AL539_RS20610	PF13533	Biotin-lipoyl like
AL539_RS20615	PF03109	AL539_RS20615
AL539_RS20620	PF01769	Divalent cation transporter
AL539_RS20620	PF03448	MgtE intracellular N domain
AL539_RS20625	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AL539_RS20630	PF07969	Amidohydrolase family
AL539_RS20635	PF01966	HD domain
AL539_RS20640	PF13443	Cro/C1-type HTH DNA-binding domain
AL539_RS20650	PF01553	Acyltransferase
AL539_RS20650	PF07690	Major Facilitator Superfamily
AL539_RS20660	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL539_RS20665	PF00255	Glutathione peroxidase
AL539_RS20670	PF11911	AL539_RS20670
AL539_RS20680	PF01323	DSBA-like thioredoxin domain
AL539_RS20695	PF00072	Response regulator receiver domain
AL539_RS20695	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS20700	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS20700	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS20710	PF01219	Prokaryotic diacylglycerol kinase
AL539_RS20715	PF00884	Sulfatase
AL539_RS20715	PF08019	AL539_RS20715
AL539_RS20720	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_RS20725	PF03733	AL539_RS20725
AL539_RS20735	PF01734	Patatin-like phospholipase
AL539_RS20740	PF02678	Pirin
AL539_RS20740	PF05726	Pirin C-terminal cupin domain
AL539_RS20745	PF00313	'Cold-shock' DNA-binding domain
AL539_RS20760	PF00962	Adenosine/AMP deaminase
AL539_RS20765	PF08534	Redoxin
AL539_RS20770	PF05036	Sporulation related domain
AL539_RS20775	PF00768	D-alanyl-D-alanine carboxypeptidase
AL539_RS20775	PF07943	Penicillin-binding protein 5, C-terminal domain
AL539_RS20785	PF02798	Glutathione S-transferase, N-terminal domain
AL539_RS20785	PF13410	Glutathione S-transferase, C-terminal domain
AL539_RS20795	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AL539_RS20795	PF08244	Glycosyl hydrolases family 32 C terminal
AL539_RS20800	PF00294	pfkB family carbohydrate kinase
AL539_RS20805	PF00367	phosphotransferase system, EIIB
AL539_RS20805	PF02378	Phosphotransferase system, EIIC
AL539_RS20810	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS20810	PF13377	Periplasmic binding protein-like domain
AL539_RS20815	PF02264	LamB porin
AL539_RS20815	PF11471	AL539_RS20815
AL539_RS20830	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS20835	PF00950	AL539_RS20835
AL539_RS20840	PF01297	Periplasmic solute binding protein family
AL539_RS20850	PF12973	ChrR Cupin-like domain
AL539_RS20855	PF04325	Protein of unknown function (DUF465)
AL539_RS20860	PF00106	short chain dehydrogenase
AL539_RS20865	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS20865	PF03466	LysR substrate binding domain
AL539_RS20870	PF06445	GyrI-like small molecule binding domain
AL539_RS20870	PF12833	Helix-turn-helix domain
AL539_RS20875	PF00155	Aminotransferase class I and II
AL539_RS20890	PF13698	AL539_RS20890
AL539_RS20905	PF00270	DEAD/DEAH box helicase
AL539_RS20905	PF00271	Helicase conserved C-terminal domain
AL539_RS20910	PF17389	AL539_RS20910
AL539_RS20915	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS20915	PF03466	LysR substrate binding domain
AL539_RS20920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS20920	PF03466	LysR substrate binding domain
AL539_RS20925	PF04399	Glutaredoxin 2, C terminal domain
AL539_RS20925	PF13417	Glutathione S-transferase, N-terminal domain
AL539_RS20930	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_RS20935	PF00107	Zinc-binding dehydrogenase
AL539_RS20935	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS20940	PF12973	ChrR Cupin-like domain
AL539_RS20945	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS20950	PF12625	AL539_RS20950
AL539_RS20950	PF12833	Helix-turn-helix domain
AL539_RS20960	PF00557	Metallopeptidase family M24
AL539_RS20960	PF01321	Creatinase/Prolidase N-terminal domain
AL539_RS20965	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_RS20970	PF01037	AsnC family
AL539_RS20970	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS20975	PF00171	Aldehyde dehydrogenase family
AL539_RS20980	PF00202	Aminotransferase class-III
AL539_RS20985	PF09831	AL539_RS20985
AL539_RS20990	PF01810	AL539_RS20990
AL539_RS20995	PF12614	AL539_RS20995
AL539_RS21000	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21000	PF03466	LysR substrate binding domain
AL539_RS21005	PF00709	Adenylosuccinate synthetase
AL539_RS21010	PF00710	Asparaginase
AL539_RS21015	PF03618	AL539_RS21015
AL539_RS21020	PF00391	PEP-utilising enzyme, mobile domain
AL539_RS21020	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AL539_RS21020	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_RS21030	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS21035	PF00579	tRNA synthetases class I (W and Y)
AL539_RS21040	PF13416	Bacterial extracellular solute-binding protein
AL539_RS21060	PF02028	BCCT family transporter
AL539_RS21065	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS21065	PF07702	UTRA domain
AL539_RS21070	PF13343	Bacterial extracellular solute-binding protein
AL539_RS21075	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL539_RS21080	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS21085	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS21090	PF00005	ABC transporter
AL539_RS21090	PF08402	TOBE domain
AL539_RS21095	PF12710	haloacid dehalogenase-like hydrolase
AL539_RS21100	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS21110	PF00873	AcrB/AcrD/AcrF family
AL539_RS21130	PF00873	AcrB/AcrD/AcrF family
AL539_RS21135	PF13437	HlyD family secretion protein
AL539_RS21135	PF13533	Biotin-lipoyl like
AL539_RS21140	PF13091	PLD-like domain
AL539_RS21145	PF13649	Methyltransferase domain
AL539_RS21150	PF04266	ASCH domain
AL539_RS21155	PF13181	Tetratricopeptide repeat
AL539_RS21160	PF09622	AL539_RS21160
AL539_RS21165	PF00376	MerR family regulatory protein
AL539_RS21165	PF09278	MerR, DNA binding
AL539_RS21170	PF07690	Major Facilitator Superfamily
AL539_RS21180	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21180	PF03466	LysR substrate binding domain
AL539_RS21185	PF07755	Protein of unknown function (DUF1611)
AL539_RS21185	PF17396	AL539_RS21185
AL539_RS21190	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AL539_RS21190	PF13378	Enolase C-terminal domain-like
AL539_RS21200	PF00009	Elongation factor Tu GTP binding domain
AL539_RS21200	PF00679	Elongation factor G C-terminus
AL539_RS21200	PF03764	Elongation factor G, domain IV
AL539_RS21200	PF14492	Elongation Factor G, domain II
AL539_RS21210	PF01636	Phosphotransferase enzyme family
AL539_RS21215	PF04400	AL539_RS21215
AL539_RS21220	PF02579	Dinitrogenase iron-molybdenum cofactor
AL539_RS21225	PF02001	AL539_RS21225
AL539_RS21235	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS21240	PF00005	ABC transporter
AL539_RS21245	PF04170	NlpE N-terminal domain
AL539_RS21250	PF06629	AL539_RS21250
AL539_RS21255	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS21255	PF12793	AL539_RS21255
AL539_RS21260	PF01389	OmpA-like transmembrane domain
AL539_RS21265	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21265	PF03466	LysR substrate binding domain
AL539_RS21270	PF00892	EamA-like transporter family
AL539_RS21275	PF13489	Methyltransferase domain
AL539_RS21280	PF05433	AL539_RS21280
AL539_RS21290	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AL539_RS21295	PF00293	NUDIX domain
AL539_RS21300	PF00857	Isochorismatase family
AL539_RS21305	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS21310	PF00892	EamA-like transporter family
AL539_RS21315	PF00455	AL539_RS21315
AL539_RS21315	PF08220	DeoR-like helix-turn-helix domain
AL539_RS21320	PF01625	Peptide methionine sulfoxide reductase
AL539_RS21325	PF03060	Nitronate monooxygenase
AL539_RS21330	PF13520	Amino acid permease
AL539_RS21335	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
AL539_RS21340	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
AL539_RS21345	PF12833	Helix-turn-helix domain
AL539_RS21350	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS21360	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS21365	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21365	PF03466	LysR substrate binding domain
AL539_RS21370	PF01810	AL539_RS21370
AL539_RS21380	PF00118	TCP-1/cpn60 chaperonin family
AL539_RS21385	PF00166	Chaperonin 10 Kd subunit
AL539_RS21390	PF00581	Rhodanese-like domain
AL539_RS21395	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_RS21400	PF11216	AL539_RS21400
AL539_RS21405	PF01070	FMN-dependent dehydrogenase
AL539_RS21410	PF00999	Sodium/hydrogen exchanger family
AL539_RS21410	PF02254	TrkA-N domain
AL539_RS21415	PF10101	AL539_RS21415
AL539_RS21425	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS21430	PF00460	Flagella basal body rod protein
AL539_RS21430	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS21435	PF10135	AL539_RS21435
AL539_RS21440	PF02119	AL539_RS21440
AL539_RS21445	PF02107	AL539_RS21445
AL539_RS21450	PF00460	Flagella basal body rod protein
AL539_RS21450	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS21455	PF00460	Flagella basal body rod protein
AL539_RS21455	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS21460	PF00460	Flagella basal body rod protein
AL539_RS21460	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS21460	PF07559	Flagellar basal body protein FlaE
AL539_RS21465	PF03963	AL539_RS21465
AL539_RS21465	PF13860	FlgD Ig-like domain
AL539_RS21465	PF13861	FlgD Tudor-like domain
AL539_RS21470	PF00460	Flagella basal body rod protein
AL539_RS21470	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_RS21475	PF00460	Flagella basal body rod protein
AL539_RS21480	PF13144	SAF-like
AL539_RS21485	PF04316	Anti-sigma-28 factor, FlgM
AL539_RS21490	PF05130	FlgN protein
AL539_RS21495	PF01464	Transglycosylase SLT domain
AL539_RS21500	PF00293	NUDIX domain
AL539_RS21505	PF03891	AL539_RS21505
AL539_RS21515	PF02698	DUF218 domain
AL539_RS21520	PF03313	AL539_RS21520
AL539_RS21520	PF03315	Serine dehydratase beta chain
AL539_RS21530	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21530	PF03466	LysR substrate binding domain
AL539_RS21535	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21535	PF03466	LysR substrate binding domain
AL539_RS21540	PF00691	OmpA family
AL539_RS21540	PF01389	OmpA-like transmembrane domain
AL539_RS21545	PF00246	Zinc carboxypeptidase
AL539_RS21550	PF01266	FAD dependent oxidoreductase
AL539_RS21555	PF11777	AL539_RS21555
AL539_RS21560	PF04393	AL539_RS21560
AL539_RS21565	PF13505	Outer membrane protein beta-barrel domain
AL539_RS21570	PF00892	EamA-like transporter family
AL539_RS21575	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS21575	PF07702	UTRA domain
AL539_RS21580	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS21585	PF00005	ABC transporter
AL539_RS21585	PF08402	TOBE domain
AL539_RS21590	PF13343	Bacterial extracellular solute-binding protein
AL539_RS21595	PF00266	Aminotransferase class-V
AL539_RS21600	PF00202	Aminotransferase class-III
AL539_RS21605	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS21615	PF00082	Subtilase family
AL539_RS21615	PF01483	Proprotein convertase P-domain
AL539_RS21615	PF02225	PA domain
AL539_RS21615	PF05922	Peptidase inhibitor I9
AL539_RS21620	PF00657	GDSL-like Lipase/Acylhydrolase
AL539_RS21625	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS21635	PF02321	Outer membrane efflux protein
AL539_RS21640	PF00005	ABC transporter
AL539_RS21640	PF02687	AL539_RS21640
AL539_RS21640	PF12704	MacB-like periplasmic core domain
AL539_RS21650	PF13737	AL539_RS21650
AL539_RS21660	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_RS21665	PF00194	Eukaryotic-type carbonic anhydrase
AL539_RS21670	PF09695	AL539_RS21670
AL539_RS21680	PF00293	NUDIX domain
AL539_RS21685	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS21690	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21690	PF03466	LysR substrate binding domain
AL539_RS21700	PF08279	HTH domain
AL539_RS21700	PF13280	AL539_RS21700
AL539_RS21725	PF12464	Maltose acetyltransferase
AL539_RS21725	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_RS21730	PF02566	OsmC-like protein
AL539_RS21735	PF01625	Peptide methionine sulfoxide reductase
AL539_RS21735	PF01641	SelR domain
AL539_RS21740	PF10013	AL539_RS21740
AL539_RS21745	PF00106	short chain dehydrogenase
AL539_RS21750	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
AL539_RS21755	PF00875	DNA photolyase
AL539_RS21755	PF03441	FAD binding domain of DNA photolyase
AL539_RS21760	PF00990	GGDEF domain
AL539_RS21770	PF01381	Helix-turn-helix
AL539_RS21770	PF06114	Domain of unknown function (DUF955)
AL539_RS21770	PF12268	AL539_RS21770
AL539_RS21775	PF00990	GGDEF domain
AL539_RS21775	PF03924	CHASE domain
AL539_RS21780	PF13532	2OG-Fe(II) oxygenase superfamily
AL539_RS21785	PF12060	AL539_RS21785
AL539_RS21790	PF01773	Na+ dependent nucleoside transporter N-terminus
AL539_RS21790	PF07662	Na+ dependent nucleoside transporter C-terminus
AL539_RS21790	PF07670	Nucleoside recognition
AL539_RS21805	PF11140	AL539_RS21805
AL539_RS21810	PF01212	Beta-eliminating lyase
AL539_RS21815	PF03116	AL539_RS21815
AL539_RS21820	PF01654	AL539_RS21820
AL539_RS21825	PF02322	AL539_RS21825
AL539_RS21830	PF10617	AL539_RS21830
AL539_RS21840	PF01266	FAD dependent oxidoreductase
AL539_RS21845	PF06808	AL539_RS21845
AL539_RS21850	PF16868	AL539_RS21850
AL539_RS21860	PF05525	AL539_RS21860
AL539_RS21865	PF00990	GGDEF domain
AL539_RS21870	PF00072	Response regulator receiver domain
AL539_RS21870	PF00158	Sigma-54 interaction domain
AL539_RS21870	PF02954	Bacterial regulatory protein, Fis family
AL539_RS21875	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS21875	PF13426	PAS domain
AL539_RS21880	PF00232	Glycosyl hydrolase family 1
AL539_RS21885	PF05787	Bacterial protein of unknown function (DUF839)
AL539_RS21890	PF04320	AL539_RS21890
AL539_RS21895	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS21895	PF03466	LysR substrate binding domain
AL539_RS21900	PF17263	AL539_RS21900
AL539_RS21905	PF12706	Beta-lactamase superfamily domain
AL539_RS21910	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS21910	PF14246	AefR-like transcriptional repressor, C-terminal region
AL539_RS21920	PF08443	RimK-like ATP-grasp domain
AL539_RS21925	PF05618	Putative ATP-dependant zinc protease
AL539_RS21930	PF00753	Metallo-beta-lactamase superfamily
AL539_RS21935	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL539_RS21940	PF00491	Arginase family
AL539_RS21945	PF07690	Major Facilitator Superfamily
AL539_RS21950	PF00326	Prolyl oligopeptidase family
AL539_RS21950	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_RS21955	PF13609	Gram-negative porin
AL539_RS21965	PF00950	AL539_RS21965
AL539_RS21970	PF00005	ABC transporter
AL539_RS21975	PF01297	Periplasmic solute binding protein family
AL539_RS21990	PF10670	AL539_RS21990
AL539_RS21995	PF10029	AL539_RS21995
AL539_RS22000	PF16357	AL539_RS22000
AL539_RS22010	PF03544	Gram-negative bacterial TonB protein C-terminal
AL539_RS22015	PF02472	Biopolymer transport protein ExbD/TolR
AL539_RS22020	PF01618	AL539_RS22020
AL539_RS22025	PF01618	AL539_RS22025
AL539_RS22030	PF11932	AL539_RS22030
AL539_RS22035	PF00593	TonB dependent receptor
AL539_RS22035	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS22040	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS22040	PF00672	HAMP domain
AL539_RS22040	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS22040	PF16750	AL539_RS22040
AL539_RS22045	PF00072	Response regulator receiver domain
AL539_RS22045	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS22050	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL539_RS22055	PF03734	L,D-transpeptidase catalytic domain
AL539_RS22060	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_RS22060	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_RS22065	PF10928	Protein of unknown function (DUF2810)
AL539_RS22115	PF11286	AL539_RS22115
AL539_RS22120	PF04013	Putative SAM-dependent RNA methyltransferase
AL539_RS22125	PF01523	Putative modulator of DNA gyrase
AL539_RS22130	PF01523	Putative modulator of DNA gyrase
AL539_RS22135	PF08543	Phosphomethylpyrimidine kinase
AL539_RS22140	PF00005	ABC transporter
AL539_RS22145	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS22150	PF09084	NMT1/THI5 like
AL539_RS22155	PF03070	TENA/THI-4/PQQC family
AL539_RS22160	PF02110	Hydroxyethylthiazole kinase family
AL539_RS22165	PF02581	Thiamine monophosphate synthase/TENI
AL539_RS22170	PF01569	PAP2 superfamily
AL539_RS22175	PF00384	Molybdopterin oxidoreductase
AL539_RS22175	PF01568	Molydopterin dinucleotide binding domain
AL539_RS22180	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL539_RS22185	PF13302	Acetyltransferase (GNAT) domain
AL539_RS22190	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS22195	PF00583	Acetyltransferase (GNAT) family
AL539_RS22200	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS22205	PF00583	Acetyltransferase (GNAT) family
AL539_RS22210	PF07963	Prokaryotic N-terminal methylation motif
AL539_RS22220	PF00892	EamA-like transporter family
AL539_RS22225	PF00155	Aminotransferase class I and II
AL539_RS22225	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS22230	PF02595	Glycerate kinase family
AL539_RS22235	PF02447	AL539_RS22235
AL539_RS22240	PF05651	AL539_RS22240
AL539_RS22240	PF13556	PucR C-terminal helix-turn-helix domain
AL539_RS22255	PF01432	Peptidase family M3
AL539_RS22260	PF06041	Bacterial protein of unknown function (DUF924)
AL539_RS22265	PF13642	protein structure with unknown function
AL539_RS22270	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS22275	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS22280	PF12706	Beta-lactamase superfamily domain
AL539_RS22285	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AL539_RS22290	PF07690	Major Facilitator Superfamily
AL539_RS22295	PF16576	AL539_RS22295
AL539_RS22300	PF03922	OmpW family
AL539_RS22305	PF00805	Pentapeptide repeats (8 copies)
AL539_RS22305	PF13599	Pentapeptide repeats (9 copies)
AL539_RS22310	PF07883	Cupin domain
AL539_RS22315	PF12710	haloacid dehalogenase-like hydrolase
AL539_RS22320	PF03067	Chitin binding domain
AL539_RS22325	PF01037	AsnC family
AL539_RS22325	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS22330	PF01810	AL539_RS22330
AL539_RS22335	PF04954	Siderophore-interacting protein
AL539_RS22335	PF08021	Siderophore-interacting FAD-binding domain
AL539_RS22340	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS22340	PF03466	LysR substrate binding domain
AL539_RS22345	PF00797	N-acetyltransferase
AL539_RS22350	PF00107	Zinc-binding dehydrogenase
AL539_RS22350	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS22355	PF00756	Putative esterase
AL539_RS22365	PF00990	GGDEF domain
AL539_RS22375	PF08282	haloacid dehalogenase-like hydrolase
AL539_RS22380	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS22380	PF03466	LysR substrate binding domain
AL539_RS22385	PF00753	Metallo-beta-lactamase superfamily
AL539_RS22390	PF01323	DSBA-like thioredoxin domain
AL539_RS22395	PF00849	RNA pseudouridylate synthase
AL539_RS22400	PF01554	MatE
AL539_RS22405	PF00990	GGDEF domain
AL539_RS22415	PF06865	Protein of unknown function (DUF1255)
AL539_RS22420	PF11012	AL539_RS22420
AL539_RS22430	PF13737	AL539_RS22430
AL539_RS22440	PF12146	Putative lysophospholipase
AL539_RS22445	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS22450	PF01757	AL539_RS22450
AL539_RS22455	PF03600	Citrate transporter
AL539_RS22460	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_RS22465	PF02588	AL539_RS22465
AL539_RS22475	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL539_RS22475	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AL539_RS22480	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_RS22480	PF02805	Metal binding domain of Ada
AL539_RS22480	PF06029	AlkA N-terminal domain
AL539_RS22480	PF12833	Helix-turn-helix domain
AL539_RS22490	PF07681	AL539_RS22490
AL539_RS22495	PF02678	Pirin
AL539_RS22500	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS22500	PF03466	LysR substrate binding domain
AL539_RS22505	PF04219	AL539_RS22505
AL539_RS22510	PF11280	AL539_RS22510
AL539_RS22515	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL539_RS22525	PF03616	AL539_RS22525
AL539_RS22530	PF00392	Bacterial regulatory proteins, gntR family
AL539_RS22535	PF00005	ABC transporter
AL539_RS22545	PF03616	AL539_RS22545
AL539_RS22555	PF14247	AL539_RS22555
AL539_RS22560	PF04134	AL539_RS22560
AL539_RS22565	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS22565	PF17200	AL539_RS22565
AL539_RS22570	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL539_RS22575	PF10026	AL539_RS22575
AL539_RS22580	PF00072	Response regulator receiver domain
AL539_RS22580	PF04397	LytTr DNA-binding domain
AL539_RS22585	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS22585	PF06580	AL539_RS22585
AL539_RS22595	PF17131	AL539_RS22595
AL539_RS22600	PF02687	AL539_RS22600
AL539_RS22600	PF12704	MacB-like periplasmic core domain
AL539_RS22605	PF00005	ABC transporter
AL539_RS22615	PF01098	AL539_RS22615
AL539_RS22620	PF01709	Transcriptional regulator
AL539_RS22625	PF11686	AL539_RS22625
AL539_RS22630	PF00072	Response regulator receiver domain
AL539_RS22630	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS22630	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS22630	PF17149	AL539_RS22630
AL539_RS22635	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS22640	PF00925	GTP cyclohydrolase II
AL539_RS22640	PF08719	Domain of unknown function (DUF1768)
AL539_RS22650	PF00005	ABC transporter
AL539_RS22655	PF00005	ABC transporter
AL539_RS22655	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS22665	PF11826	AL539_RS22665
AL539_RS22670	PF13614	AAA domain
AL539_RS22675	PF02195	ParB-like nuclease domain
AL539_RS22680	PF05127	Helicase
AL539_RS22680	PF08351	Domain of unknown function (DUF1726)
AL539_RS22680	PF13718	GNAT acetyltransferase 2
AL539_RS22685	PF03961	AL539_RS22685
AL539_RS22690	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS22695	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS22695	PF03466	LysR substrate binding domain
AL539_RS22710	PF00367	phosphotransferase system, EIIB
AL539_RS22710	PF02378	Phosphotransferase system, EIIC
AL539_RS22715	PF01380	SIS domain
AL539_RS22725	PF01380	SIS domain
AL539_RS22725	PF01418	Helix-turn-helix domain, rpiR family
AL539_RS22730	PF00246	Zinc carboxypeptidase
AL539_RS22735	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS22740	PF03358	NADPH-dependent FMN reductase
AL539_RS22750	PF00924	Mechanosensitive ion channel
AL539_RS22755	PF00005	ABC transporter
AL539_RS22755	PF00664	ABC transporter transmembrane region
AL539_RS22760	PF00563	EAL domain
AL539_RS22760	PF00990	GGDEF domain
AL539_RS22760	PF16448	AL539_RS22760
AL539_RS22765	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
AL539_RS22770	PF13437	HlyD family secretion protein
AL539_RS22770	PF13533	Biotin-lipoyl like
AL539_RS22775	PF00072	Response regulator receiver domain
AL539_RS22775	PF02954	Bacterial regulatory protein, Fis family
AL539_RS22780	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS22780	PF02743	Cache domain
AL539_RS22785	PF01243	Pyridoxamine 5'-phosphate oxidase
AL539_RS22785	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AL539_RS22790	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS22790	PF08448	PAS fold
AL539_RS22795	PF12833	Helix-turn-helix domain
AL539_RS22800	PF00171	Aldehyde dehydrogenase family
AL539_RS22800	PF01619	Proline dehydrogenase
AL539_RS22800	PF14850	DNA-binding domain of Proline dehydrogenase
AL539_RS22810	PF00474	Sodium:solute symporter family
AL539_RS22815	PF13302	Acetyltransferase (GNAT) domain
AL539_RS22820	PF00076	RNA recognition motif
AL539_RS22830	PF13302	Acetyltransferase (GNAT) domain
AL539_RS22840	PF01037	AsnC family
AL539_RS22840	PF13412	Winged helix-turn-helix DNA-binding
AL539_RS22850	PF00005	ABC transporter
AL539_RS22850	PF00664	ABC transporter transmembrane region
AL539_RS22855	PF02274	Amidinotransferase
AL539_RS22860	PF00270	DEAD/DEAH box helicase
AL539_RS22860	PF00271	Helicase conserved C-terminal domain
AL539_RS22865	PF03473	MOSC domain
AL539_RS22865	PF03475	3-alpha domain
AL539_RS22870	PF12833	Helix-turn-helix domain
AL539_RS22875	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS22885	PF04542	Sigma-70 region 2
AL539_RS22885	PF08281	Sigma-70, region 4
AL539_RS22890	PF01965	DJ-1/PfpI family
AL539_RS22900	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS22900	PF03466	LysR substrate binding domain
AL539_RS22905	PF00188	Cysteine-rich secretory protein family
AL539_RS22910	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS22920	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS22920	PF13192	Thioredoxin domain
AL539_RS22925	PF00578	AhpC/TSA family
AL539_RS22925	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL539_RS22930	PF01047	MarR family
AL539_RS22935	PF02566	OsmC-like protein
AL539_RS22945	PF05016	Plasmid stabilisation system protein
AL539_RS22950	PF02698	DUF218 domain
AL539_RS22955	PF06445	GyrI-like small molecule binding domain
AL539_RS22955	PF12833	Helix-turn-helix domain
AL539_RS22960	PF12833	Helix-turn-helix domain
AL539_RS22965	PF13302	Acetyltransferase (GNAT) domain
AL539_RS22970	PF11212	AL539_RS22970
AL539_RS22975	PF07143	Hydroxyneurosporene synthase (CrtC)
AL539_RS22975	PF17186	AL539_RS22975
AL539_RS22980	PF02687	AL539_RS22980
AL539_RS22985	PF00005	ABC transporter
AL539_RS22990	PF11730	AL539_RS22990
AL539_RS22995	PF01136	AL539_RS22995
AL539_RS23000	PF03625	Domain of unknown function DUF302
AL539_RS23005	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL539_RS23005	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL539_RS23010	PF04183	IucA / IucC family
AL539_RS23010	PF06276	Ferric iron reductase FhuF-like transporter
AL539_RS23015	PF07690	Major Facilitator Superfamily
AL539_RS23020	PF04183	IucA / IucC family
AL539_RS23020	PF06276	Ferric iron reductase FhuF-like transporter
AL539_RS23030	PF00593	TonB dependent receptor
AL539_RS23030	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS23035	PF00593	TonB dependent receptor
AL539_RS23035	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS23040	PF01497	Periplasmic binding protein
AL539_RS23045	PF01032	FecCD transport family
AL539_RS23050	PF01032	FecCD transport family
AL539_RS23055	PF00005	ABC transporter
AL539_RS23060	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS23060	PF00672	HAMP domain
AL539_RS23060	PF02743	Cache domain
AL539_RS23065	PF00675	Insulinase (Peptidase family M16)
AL539_RS23065	PF05193	Peptidase M16 inactive domain
AL539_RS23070	PF04519	AL539_RS23070
AL539_RS23075	PF01551	Peptidase family M23
AL539_RS23085	PF01852	START domain
AL539_RS23090	PF07690	Major Facilitator Superfamily
AL539_RS23095	PF00239	Resolvase, N terminal domain
AL539_RS23095	PF02796	Helix-turn-helix domain of resolvase
AL539_RS23100	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS23100	PF13377	Periplasmic binding protein-like domain
AL539_RS23105	PF00474	Sodium:solute symporter family
AL539_RS23110	PF07366	SnoaL-like polyketide cyclase
AL539_RS23115	PF07366	SnoaL-like polyketide cyclase
AL539_RS23120	PF06808	AL539_RS23120
AL539_RS23125	PF04290	AL539_RS23125
AL539_RS23130	PF03480	Bacterial extracellular solute-binding protein, family 7
AL539_RS23135	PF00356	Bacterial regulatory proteins, lacI family
AL539_RS23135	PF13377	Periplasmic binding protein-like domain
AL539_RS23140	PF03328	HpcH/HpaI aldolase/citrate lyase family
AL539_RS23145	PF00815	Histidinol dehydrogenase
AL539_RS23150	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS23160	PF12146	Putative lysophospholipase
AL539_RS23170	PF12680	SnoaL-like domain
AL539_RS23175	PF07690	Major Facilitator Superfamily
AL539_RS23185	PF03313	AL539_RS23185
AL539_RS23185	PF03315	Serine dehydratase beta chain
AL539_RS23190	PF00128	Alpha amylase, catalytic domain
AL539_RS23190	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL539_RS23195	PF02264	LamB porin
AL539_RS23200	PF07148	AL539_RS23200
AL539_RS23210	PF00128	Alpha amylase, catalytic domain
AL539_RS23215	PF02018	Carbohydrate binding domain
AL539_RS23215	PF04231	Endonuclease I
AL539_RS23220	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL539_RS23220	PF03714	Bacterial pullanase-associated domain
AL539_RS23220	PF11852	Domain of unknown function (DUF3372)
AL539_RS23225	PF08238	Sel1 repeat
AL539_RS23230	PF04014	Antidote-toxin recognition MazE
AL539_RS23235	PF08543	Phosphomethylpyrimidine kinase
AL539_RS23240	PF00375	Sodium:dicarboxylate symporter family
AL539_RS23245	PF03193	Protein of unknown function, DUF258
AL539_RS23250	PF00367	phosphotransferase system, EIIB
AL539_RS23255	PF02630	SCO1/SenC
AL539_RS23265	PF04018	AL539_RS23265
AL539_RS23270	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS23275	PF00343	Carbohydrate phosphorylase
AL539_RS23280	PF02446	4-alpha-glucanotransferase
AL539_RS23285	PF00128	Alpha amylase, catalytic domain
AL539_RS23285	PF02806	Alpha amylase, C-terminal all-beta domain
AL539_RS23285	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL539_RS23290	PF00912	Transglycosylase
AL539_RS23295	PF00128	Alpha amylase, catalytic domain
AL539_RS23300	PF13462	Thioredoxin
AL539_RS23310	PF07670	Nucleoside recognition
AL539_RS23315	PF07670	Nucleoside recognition
AL539_RS23320	PF01546	Peptidase family M20/M25/M40
AL539_RS23320	PF07687	Peptidase dimerisation domain
AL539_RS23325	PF06803	AL539_RS23325
AL539_RS23340	PF00375	Sodium:dicarboxylate symporter family
AL539_RS23345	PF08874	AL539_RS23345
AL539_RS23350	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS23350	PF03466	LysR substrate binding domain
AL539_RS23355	PF08803	Putative mono-oxygenase ydhR
AL539_RS23370	PF13737	AL539_RS23370
AL539_RS23380	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL539_RS23385	PF02563	Polysaccharide biosynthesis/export protein
AL539_RS23385	PF10531	SLBB domain
AL539_RS23390	PF00881	Nitroreductase family
AL539_RS23395	PF01914	AL539_RS23395
AL539_RS23400	PF01734	Patatin-like phospholipase
AL539_RS23405	PF03067	Chitin binding domain
AL539_RS23410	PF02469	Fasciclin domain
AL539_RS23415	PF00875	DNA photolyase
AL539_RS23415	PF03441	FAD binding domain of DNA photolyase
AL539_RS23425	PF00581	Rhodanese-like domain
AL539_RS23430	PF00561	alpha/beta hydrolase fold
AL539_RS23435	PF00768	D-alanyl-D-alanine carboxypeptidase
AL539_RS23435	PF07943	Penicillin-binding protein 5, C-terminal domain
AL539_RS23440	PF00128	Alpha amylase, catalytic domain
AL539_RS23440	PF09985	Domain of unknown function (DUF2223)
AL539_RS23445	PF12833	Helix-turn-helix domain
AL539_RS23450	PF00881	Nitroreductase family
AL539_RS23455	PF03992	Antibiotic biosynthesis monooxygenase
AL539_RS23460	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS23460	PF03466	LysR substrate binding domain
AL539_RS23465	PF09905	Uncharacterized conserved protein (DUF2132)
AL539_RS23470	PF13279	Thioesterase-like superfamily
AL539_RS23475	PF00175	Oxidoreductase NAD-binding domain
AL539_RS23475	PF00970	Oxidoreductase FAD-binding domain
AL539_RS23480	PF06271	AL539_RS23480
AL539_RS23485	PF09829	AL539_RS23485
AL539_RS23490	PF01594	AL539_RS23490
AL539_RS23495	PF07885	Ion channel
AL539_RS23500	PF16576	AL539_RS23500
AL539_RS23505	PF07869	AL539_RS23505
AL539_RS23510	PF02321	Outer membrane efflux protein
AL539_RS23515	PF04632	AL539_RS23515
AL539_RS23525	PF00892	EamA-like transporter family
AL539_RS23530	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS23530	PF03466	LysR substrate binding domain
AL539_RS23535	PF07690	Major Facilitator Superfamily
AL539_RS23540	PF00583	Acetyltransferase (GNAT) family
AL539_RS23545	PF00583	Acetyltransferase (GNAT) family
AL539_RS23550	PF10973	AL539_RS23550
AL539_RS23555	PF00072	Response regulator receiver domain
AL539_RS23555	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS23560	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS23560	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS23565	PF06123	AL539_RS23565
AL539_RS23570	PF10990	AL539_RS23570
AL539_RS23575	PF00923	Transaldolase
AL539_RS23580	PF04055	Radical SAM superfamily
AL539_RS23580	PF13353	4Fe-4S single cluster domain
AL539_RS23585	PF01228	Glycine radical
AL539_RS23585	PF02901	Pyruvate formate lyase
AL539_RS23590	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS23595	PF04982	AL539_RS23595
AL539_RS23600	PF09493	AL539_RS23600
AL539_RS23605	PF08000	Bacterial PH domain
AL539_RS23620	PF00691	OmpA family
AL539_RS23620	PF13677	AL539_RS23620
AL539_RS23625	PF01618	AL539_RS23625
AL539_RS23630	PF04542	Sigma-70 region 2
AL539_RS23630	PF04545	Sigma-70, region 4
AL539_RS23635	PF03748	AL539_RS23635
AL539_RS23640	PF02120	Flagellar hook-length control protein FliK
AL539_RS23650	PF02561	Flagellar protein FliS
AL539_RS23655	PF02465	AL539_RS23655
AL539_RS23655	PF07195	AL539_RS23655
AL539_RS23655	PF07196	Flagellin hook IN motif
AL539_RS23665	PF00669	Bacterial flagellin N-terminal helical region
AL539_RS23665	PF00700	Bacterial flagellin C-terminal helical region
AL539_RS23670	PF00563	EAL domain
AL539_RS23675	PF00771	FHIPEP family
AL539_RS23680	PF01312	FlhB HrpN YscU SpaS Family
AL539_RS23685	PF01311	AL539_RS23685
AL539_RS23690	PF01313	AL539_RS23690
AL539_RS23695	PF00813	AL539_RS23695
AL539_RS23700	PF01052	Surface presentation of antigens (SPOA)
AL539_RS23705	PF01052	Surface presentation of antigens (SPOA)
AL539_RS23710	PF00691	OmpA family
AL539_RS23715	PF00158	Sigma-54 interaction domain
AL539_RS23715	PF02954	Bacterial regulatory protein, Fis family
AL539_RS23720	PF02049	AL539_RS23720
AL539_RS23725	PF01514	Secretory protein of YscJ/FliF family
AL539_RS23725	PF08345	AL539_RS23725
AL539_RS23730	PF01706	FliG C-terminal domain
AL539_RS23730	PF14841	FliG middle domain
AL539_RS23730	PF14842	FliG N-terminal domain
AL539_RS23735	PF02108	AL539_RS23735
AL539_RS23740	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_RS23745	PF02050	Flagellar FliJ protein
AL539_RS23750	PF00089	Trypsin
AL539_RS23755	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS23755	PF03466	LysR substrate binding domain
AL539_RS23760	PF00892	EamA-like transporter family
AL539_RS23765	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
AL539_RS23775	PF07361	Cytochrome b562
AL539_RS23785	PF03929	AL539_RS23785
AL539_RS23790	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_RS23795	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS23795	PF03466	LysR substrate binding domain
AL539_RS23805	PF06468	Spondin_N
AL539_RS23810	PF06468	Spondin_N
AL539_RS23815	PF00072	Response regulator receiver domain
AL539_RS23815	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS23820	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS23825	PF00080	Copper/zinc superoxide dismutase (SODC)
AL539_RS23830	PF00266	Aminotransferase class-V
AL539_RS23835	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS23840	PF00563	EAL domain
AL539_RS23840	PF00990	GGDEF domain
AL539_RS23845	PF00155	Aminotransferase class I and II
AL539_RS23850	PF00107	Zinc-binding dehydrogenase
AL539_RS23850	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_RS23855	PF05229	AL539_RS23855
AL539_RS23860	PF05229	AL539_RS23860
AL539_RS23865	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AL539_RS23870	PF00577	Outer membrane usher protein
AL539_RS23875	PF05229	AL539_RS23875
AL539_RS23880	PF00194	Eukaryotic-type carbonic anhydrase
AL539_RS23885	PF00924	Mechanosensitive ion channel
AL539_RS23895	PF01070	FMN-dependent dehydrogenase
AL539_RS23900	PF02652	AL539_RS23900
AL539_RS23905	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS23905	PF03466	LysR substrate binding domain
AL539_RS23910	PF00326	Prolyl oligopeptidase family
AL539_RS23910	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_RS23915	PF00005	ABC transporter
AL539_RS23915	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_RS23925	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL539_RS23925	PF13654	AAA domain
AL539_RS23930	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS23930	PF00672	HAMP domain
AL539_RS23935	PF13609	Gram-negative porin
AL539_RS23940	PF07238	PilZ domain
AL539_RS23940	PF12945	Flagellar protein YcgR
AL539_RS23945	PF14542	GCN5-related N-acetyl-transferase
AL539_RS23950	PF02958	Ecdysteroid kinase
AL539_RS23955	PF00583	Acetyltransferase (GNAT) family
AL539_RS23960	PF12800	4Fe-4S binding domain
AL539_RS23960	PF12838	4Fe-4S dicluster domain
AL539_RS23965	PF12801	AL539_RS23965
AL539_RS23965	PF13187	4Fe-4S dicluster domain
AL539_RS23970	PF07690	Major Facilitator Superfamily
AL539_RS23975	PF14145	AL539_RS23975
AL539_RS23980	PF02361	Cobalt transport protein
AL539_RS23985	PF00005	ABC transporter
AL539_RS23985	PF12558	AL539_RS23985
AL539_RS23990	PF07155	ECF-type riboflavin transporter, S component
AL539_RS23995	PF13533	Biotin-lipoyl like
AL539_RS24000	PF11742	AL539_RS24000
AL539_RS24005	PF00990	GGDEF domain
AL539_RS24020	PF01048	Phosphorylase superfamily
AL539_RS24025	PF04463	AL539_RS24025
AL539_RS24025	PF08349	AL539_RS24025
AL539_RS24030	PF13411	MerR HTH family regulatory protein
AL539_RS24035	PF00875	DNA photolyase
AL539_RS24035	PF03441	FAD binding domain of DNA photolyase
AL539_RS24040	PF01476	LysM domain
AL539_RS24040	PF03734	L,D-transpeptidase catalytic domain
AL539_RS24045	PF04728	Lipoprotein leucine-zipper
AL539_RS24050	PF00270	DEAD/DEAH box helicase
AL539_RS24050	PF00271	Helicase conserved C-terminal domain
AL539_RS24055	PF00326	Prolyl oligopeptidase family
AL539_RS24055	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_RS24060	PF00593	TonB dependent receptor
AL539_RS24060	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS24065	PF01483	Proprotein convertase P-domain
AL539_RS24070	PF07603	AL539_RS24070
AL539_RS24075	PF07603	AL539_RS24075
AL539_RS24080	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS24080	PF00672	HAMP domain
AL539_RS24085	PF12849	PBP superfamily domain
AL539_RS24090	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS24095	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS24100	PF00005	ABC transporter
AL539_RS24105	PF00990	GGDEF domain
AL539_RS24110	PF13584	AL539_RS24110
AL539_RS24115	PF13519	von Willebrand factor type A domain
AL539_RS24120	PF00092	von Willebrand factor type A domain
AL539_RS24125	PF14316	AL539_RS24125
AL539_RS24130	PF01882	AL539_RS24130
AL539_RS24135	PF07726	ATPase family associated with various cellular activities (AAA)
AL539_RS24140	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS24140	PF00672	HAMP domain
AL539_RS24150	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS24155	PF00196	Bacterial regulatory proteins, luxR family
AL539_RS24160	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL539_RS24165	PF00005	ABC transporter
AL539_RS24170	PF13437	HlyD family secretion protein
AL539_RS24170	PF13533	Biotin-lipoyl like
AL539_RS24175	PF00924	Mechanosensitive ion channel
AL539_RS24180	PF01032	FecCD transport family
AL539_RS24185	PF01497	Periplasmic binding protein
AL539_RS24190	PF00005	ABC transporter
AL539_RS24200	PF00005	ABC transporter
AL539_RS24200	PF00664	ABC transporter transmembrane region
AL539_RS24205	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS24205	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_RS24205	PF13493	Domain of unknown function (DUF4118)
AL539_RS24210	PF00072	Response regulator receiver domain
AL539_RS24210	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS24215	PF02254	TrkA-N domain
AL539_RS24220	PF02386	Cation transport protein
AL539_RS24225	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS24225	PF03466	LysR substrate binding domain
AL539_RS24230	PF02028	BCCT family transporter
AL539_RS24235	PF00355	Rieske [2Fe-2S] domain
AL539_RS24235	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
AL539_RS24240	PF00171	Aldehyde dehydrogenase family
AL539_RS24245	PF00301	Rubredoxin
AL539_RS24245	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS24250	PF01266	FAD dependent oxidoreductase
AL539_RS24255	PF06249	Ethanolamine utilisation protein EutQ
AL539_RS24260	PF00127	Copper binding proteins, plastocyanin/azurin family
AL539_RS24265	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS24275	PF00158	Sigma-54 interaction domain
AL539_RS24275	PF01590	GAF domain
AL539_RS24280	PF00258	Flavodoxin
AL539_RS24280	PF00301	Rubredoxin
AL539_RS24280	PF00753	Metallo-beta-lactamase superfamily
AL539_RS24285	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS24290	PF09313	Domain of unknown function (DUF1971)
AL539_RS24295	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_RS24295	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_RS24300	PF00199	Catalase
AL539_RS24300	PF06628	Catalase-related immune-responsive
AL539_RS24305	PF00043	Glutathione S-transferase, C-terminal domain
AL539_RS24305	PF02798	Glutathione S-transferase, N-terminal domain
AL539_RS24310	PF00107	Zinc-binding dehydrogenase
AL539_RS24310	PF16884	AL539_RS24310
AL539_RS24315	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS24315	PF16925	AL539_RS24315
AL539_RS24320	PF04266	ASCH domain
AL539_RS24325	PF04892	AL539_RS24325
AL539_RS24330	PF01943	AL539_RS24330
AL539_RS24330	PF14667	Polysaccharide biosynthesis C-terminal domain
AL539_RS24335	PF13579	Glycosyl transferase 4-like domain
AL539_RS24335	PF13692	Glycosyl transferases group 1
AL539_RS24340	PF10364	AL539_RS24340
AL539_RS24345	PF04932	AL539_RS24345
AL539_RS24350	PF00534	Glycosyl transferases group 1
AL539_RS24350	PF13439	Glycosyltransferase Family 4
AL539_RS24355	PF10364	AL539_RS24355
AL539_RS24360	PF02706	Chain length determinant protein
AL539_RS24360	PF13614	AAA domain
AL539_RS24360	PF13807	AL539_RS24360
AL539_RS24365	PF02563	Polysaccharide biosynthesis/export protein
AL539_RS24365	PF10531	SLBB domain
AL539_RS24370	PF10082	AL539_RS24370
AL539_RS24375	PF02397	AL539_RS24375
AL539_RS24375	PF13727	CoA-binding domain
AL539_RS24380	PF00005	ABC transporter
AL539_RS24380	PF08402	TOBE domain
AL539_RS24385	PF13416	Bacterial extracellular solute-binding protein
AL539_RS24390	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS24390	PF14785	Maltose transport system permease protein MalF P2 domain
AL539_RS24395	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS24405	PF03061	Thioesterase superfamily
AL539_RS24410	PF00892	EamA-like transporter family
AL539_RS24415	PF12833	Helix-turn-helix domain
AL539_RS24420	PF00005	ABC transporter
AL539_RS24425	PF00005	ABC transporter
AL539_RS24425	PF00664	ABC transporter transmembrane region
AL539_RS24430	PF00593	TonB dependent receptor
AL539_RS24430	PF07715	TonB-dependent Receptor Plug Domain
AL539_RS24435	PF01497	Periplasmic binding protein
AL539_RS24440	PF01032	FecCD transport family
AL539_RS24445	PF01032	FecCD transport family
AL539_RS24450	PF00246	Zinc carboxypeptidase
AL539_RS24455	PF05661	AL539_RS24455
AL539_RS24460	PF01979	Amidohydrolase family
AL539_RS24470	PF01679	AL539_RS24470
AL539_RS24475	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_RS24475	PF00175	Oxidoreductase NAD-binding domain
AL539_RS24475	PF00970	Oxidoreductase FAD-binding domain
AL539_RS24475	PF03473	MOSC domain
AL539_RS24475	PF03476	MOSC N-terminal beta barrel domain
AL539_RS24480	PF02540	NAD synthase
AL539_RS24485	PF01467	Cytidylyltransferase
AL539_RS24500	PF01553	Acyltransferase
AL539_RS24510	PF07383	AL539_RS24510
AL539_RS24515	PF04175	Protein of unknown function (DUF406)
AL539_RS24525	PF00005	ABC transporter
AL539_RS24530	PF01032	FecCD transport family
AL539_RS24535	PF01497	Periplasmic binding protein
AL539_RS24540	PF02472	Biopolymer transport protein ExbD/TolR
AL539_RS24545	PF01618	AL539_RS24545
AL539_RS24550	PF03544	Gram-negative bacterial TonB protein C-terminal
AL539_RS24555	PF04055	Radical SAM superfamily
AL539_RS24560	PF06228	Haem utilisation ChuX/HutX
AL539_RS24565	PF01243	Pyridoxamine 5'-phosphate oxidase
AL539_RS24570	PF01923	Cobalamin adenosyltransferase
AL539_RS24575	PF00072	Response regulator receiver domain
AL539_RS24575	PF01584	CheW-like domain
AL539_RS24580	PF13616	PPIC-type PPIASE domain
AL539_RS24585	PF01554	MatE
AL539_RS24590	PF00005	ABC transporter
AL539_RS24595	PF00005	ABC transporter
AL539_RS24600	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS24605	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS24610	PF00455	AL539_RS24610
AL539_RS24610	PF08220	DeoR-like helix-turn-helix domain
AL539_RS24615	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_RS24615	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_RS24620	PF07005	Protein of unknown function, DUF1537
AL539_RS24620	PF17042	AL539_RS24620
AL539_RS24625	PF00596	Class II Aldolase and Adducin N-terminal domain
AL539_RS24630	PF01261	Xylose isomerase-like TIM barrel
AL539_RS24635	PF01370	NAD dependent epimerase/dehydratase family
AL539_RS24640	PF02447	AL539_RS24640
AL539_RS24645	PF02583	Metal-sensitive transcriptional repressor
AL539_RS24650	PF03824	AL539_RS24650
AL539_RS24660	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS24660	PF00672	HAMP domain
AL539_RS24660	PF17203	AL539_RS24660
AL539_RS24665	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS24665	PF03466	LysR substrate binding domain
AL539_RS24670	PF01039	Carboxyl transferase domain
AL539_RS24680	PF01752	Collagenase
AL539_RS24680	PF04151	Bacterial pre-peptidase C-terminal domain
AL539_RS24680	PF08453	Peptidase family M9 N-terminal
AL539_RS24685	PF09016	Pas factor saposin fold
AL539_RS24690	PF02627	Carboxymuconolactone decarboxylase family
AL539_RS24695	PF13411	MerR HTH family regulatory protein
AL539_RS24700	PF00128	Alpha amylase, catalytic domain
AL539_RS24705	PF12840	Helix-turn-helix domain
AL539_RS24715	PF00999	Sodium/hydrogen exchanger family
AL539_RS24715	PF02254	TrkA-N domain
AL539_RS24720	PF02525	Flavodoxin-like fold
AL539_RS24725	PF00582	Universal stress protein family
AL539_RS24730	PF00005	ABC transporter
AL539_RS24735	PF00326	Prolyl oligopeptidase family
AL539_RS24735	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_RS24745	PF13437	HlyD family secretion protein
AL539_RS24745	PF13533	Biotin-lipoyl like
AL539_RS24750	PF00873	AcrB/AcrD/AcrF family
AL539_RS24755	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_RS24765	PF13302	Acetyltransferase (GNAT) domain
AL539_RS24775	PF00990	GGDEF domain
AL539_RS24775	PF01590	GAF domain
AL539_RS24780	PF13354	Beta-lactamase enzyme family
AL539_RS24790	PF00873	AcrB/AcrD/AcrF family
AL539_RS24795	PF11604	Copper binding periplasmic protein CusF
AL539_RS24795	PF16576	AL539_RS24795
AL539_RS24800	PF02321	Outer membrane efflux protein
AL539_RS24810	PF00037	4Fe-4S binding domain
AL539_RS24810	PF00384	Molybdopterin oxidoreductase
AL539_RS24810	PF01568	Molydopterin dinucleotide binding domain
AL539_RS24810	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_RS24810	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS24810	PF13510	2Fe-2S iron-sulfur cluster binding domain
AL539_RS24810	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL539_RS24820	PF12698	ABC-2 family transporter protein
AL539_RS24825	PF00005	ABC transporter
AL539_RS24830	PF13437	HlyD family secretion protein
AL539_RS24835	PF02567	Phenazine biosynthesis-like protein
AL539_RS24840	PF01161	Phosphatidylethanolamine-binding protein
AL539_RS24845	PF12833	Helix-turn-helix domain
AL539_RS24850	PF01758	Sodium Bile acid symporter family
AL539_RS24855	PF01022	Bacterial regulatory protein, arsR family
AL539_RS24860	PF02525	Flavodoxin-like fold
AL539_RS24865	PF01638	HxlR-like helix-turn-helix
AL539_RS24875	PF13737	AL539_RS24875
AL539_RS24880	PF08534	Redoxin
AL539_RS24885	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_RS24885	PF12793	AL539_RS24885
AL539_RS24890	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS24890	PF03466	LysR substrate binding domain
AL539_RS24895	PF00248	Aldo/keto reductase family
AL539_RS24900	PF03928	Domain of unknown function (DUF336)
AL539_RS24910	PF13560	Helix-turn-helix domain
AL539_RS24920	PF03222	Tryptophan/tyrosine permease family
AL539_RS24930	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS24930	PF00672	HAMP domain
AL539_RS24930	PF02743	Cache domain
AL539_RS24935	PF07670	Nucleoside recognition
AL539_RS24945	PF06912	AL539_RS24945
AL539_RS24950	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_RS24960	PF01551	Peptidase family M23
AL539_RS24960	PF04225	Opacity-associated protein A LysM-like domain
AL539_RS24965	PF00563	EAL domain
AL539_RS24965	PF00990	GGDEF domain
AL539_RS24970	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS24970	PF03466	LysR substrate binding domain
AL539_RS24975	PF07690	Major Facilitator Superfamily
AL539_RS24990	PF00462	Glutaredoxin
AL539_RS24995	PF00892	EamA-like transporter family
AL539_RS25000	PF13609	Gram-negative porin
AL539_RS25005	PF13609	Gram-negative porin
AL539_RS25010	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL539_RS25015	PF05437	AL539_RS25015
AL539_RS25020	PF03591	AL539_RS25020
AL539_RS25025	PF02311	AraC-like ligand binding domain
AL539_RS25025	PF12833	Helix-turn-helix domain
AL539_RS25030	PF01810	AL539_RS25030
AL539_RS25035	PF00583	Acetyltransferase (GNAT) family
AL539_RS25040	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_RS25040	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_RS25040	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_RS25040	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_RS25045	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL539_RS25045	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
AL539_RS25045	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_RS25050	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL539_RS25055	PF04442	Cytochrome c oxidase assembly protein CtaG/Cox11
AL539_RS25060	PF00510	Cytochrome c oxidase subunit III
AL539_RS25065	PF11137	AL539_RS25065
AL539_RS25070	PF02104	AL539_RS25070
AL539_RS25080	PF02628	AL539_RS25080
AL539_RS25085	PF01040	UbiA prenyltransferase family
AL539_RS25090	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_RS25090	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL539_RS25095	PF13462	Thioredoxin
AL539_RS25100	PF00691	OmpA family
AL539_RS25105	PF00462	Glutaredoxin
AL539_RS25115	PF07152	YaeQ protein
AL539_RS25120	PF00313	'Cold-shock' DNA-binding domain
AL539_RS25125	PF03889	AL539_RS25125
AL539_RS25130	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS25130	PF00990	GGDEF domain
AL539_RS25135	PF00140	Sigma-70 factor, region 1
AL539_RS25135	PF04542	Sigma-70 region 2
AL539_RS25135	PF04545	Sigma-70, region 4
AL539_RS25145	PF00005	ABC transporter
AL539_RS25145	PF00664	ABC transporter transmembrane region
AL539_RS25150	PF00005	ABC transporter
AL539_RS25150	PF00664	ABC transporter transmembrane region
AL539_RS25155	PF02321	Outer membrane efflux protein
AL539_RS25160	PF00072	Response regulator receiver domain
AL539_RS25165	PF13437	HlyD family secretion protein
AL539_RS25185	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS25185	PF00672	HAMP domain
AL539_RS25185	PF12729	AL539_RS25185
AL539_RS25190	PF00210	Ferritin-like domain
AL539_RS25195	PF13419	Haloacid dehalogenase-like hydrolase
AL539_RS25200	PF07995	Glucose / Sorbosone dehydrogenase
AL539_RS25205	PF00465	Iron-containing alcohol dehydrogenase
AL539_RS25215	PF00892	EamA-like transporter family
AL539_RS25220	PF01545	Cation efflux family
AL539_RS25225	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS25225	PF03466	LysR substrate binding domain
AL539_RS25230	PF13489	Methyltransferase domain
AL539_RS25235	PF00501	AMP-binding enzyme
AL539_RS25240	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
AL539_RS25245	PF01329	Pterin 4 alpha carbinolamine dehydratase
AL539_RS25255	PF08888	HopJ type III effector protein
AL539_RS25260	PF06945	AL539_RS25260
AL539_RS25260	PF14375	AL539_RS25260
AL539_RS25265	PF12843	AL539_RS25265
AL539_RS25270	PF00239	Resolvase, N terminal domain
AL539_RS25270	PF07508	Recombinase
AL539_RS25280	PF01051	Initiator Replication protein
AL539_RS25305	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_RS25305	PF04851	Type III restriction enzyme, res subunit
AL539_RS25305	PF11867	AL539_RS25305
AL539_RS25320	PF01420	Type I restriction modification DNA specificity domain
AL539_RS25325	PF02384	N-6 DNA Methylase
AL539_RS25325	PF12161	HsdM N-terminal domain
AL539_RS25330	PF00589	Phage integrase family
AL539_RS25365	PF01906	Putative heavy-metal-binding
AL539_RS25380	PF12358	AL539_RS25380
AL539_RS25445	PF09905	Uncharacterized conserved protein (DUF2132)
AL539_RS25450	PF11840	AL539_RS25450
AL539_RS25455	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_RS25465	PF00313	'Cold-shock' DNA-binding domain
AL539_RS25475	PF01470	Pyroglutamyl peptidase
AL539_RS25485	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_RS25490	PF00270	DEAD/DEAH box helicase
AL539_RS25490	PF00271	Helicase conserved C-terminal domain
AL539_RS25505	PF01614	Bacterial transcriptional regulator
AL539_RS25505	PF08279	HTH domain
AL539_RS25510	PF00563	EAL domain
AL539_RS25510	PF12792	AL539_RS25510
AL539_RS25515	PF00005	ABC transporter
AL539_RS25520	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS25520	PF08447	PAS fold
AL539_RS25530	PF01575	MaoC like domain
AL539_RS25535	PF12849	PBP superfamily domain
AL539_RS25540	PF11225	AL539_RS25540
AL539_RS25545	PF12833	Helix-turn-helix domain
AL539_RS25550	PF00575	S1 RNA binding domain
AL539_RS25550	PF00773	RNB domain
AL539_RS25550	PF08206	Ribonuclease B OB domain
AL539_RS25555	PF00270	DEAD/DEAH box helicase
AL539_RS25555	PF00271	Helicase conserved C-terminal domain
AL539_RS25555	PF03880	DbpA RNA binding domain
AL539_RS25570	PF00871	Acetokinase family
AL539_RS25575	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS25575	PF03466	LysR substrate binding domain
AL539_RS25580	PF01738	Dienelactone hydrolase family
AL539_RS25585	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
AL539_RS25600	PF01925	AL539_RS25600
AL539_RS25605	PF02311	AraC-like ligand binding domain
AL539_RS25605	PF12833	Helix-turn-helix domain
AL539_RS25610	PF08856	AL539_RS25610
AL539_RS25615	PF01475	Ferric uptake regulator family
AL539_RS25620	PF01979	Amidohydrolase family
AL539_RS25625	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_RS25630	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_RS25635	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_RS25640	PF01551	Peptidase family M23
AL539_RS25640	PF04225	Opacity-associated protein A LysM-like domain
AL539_RS25650	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_RS25650	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL539_RS25655	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_RS25655	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL539_RS25660	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL539_RS25670	PF01914	AL539_RS25670
AL539_RS25675	PF06146	AL539_RS25675
AL539_RS25685	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_RS25685	PF08447	PAS fold
AL539_RS25685	PF13426	PAS domain
AL539_RS25690	PF00892	EamA-like transporter family
AL539_RS25695	PF00682	HMGL-like
AL539_RS25700	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS25705	PF01039	Carboxyl transferase domain
AL539_RS25710	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_RS25710	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_RS25710	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_RS25715	PF00376	MerR family regulatory protein
AL539_RS25715	PF09278	MerR, DNA binding
AL539_RS25720	PF00108	Thiolase, N-terminal domain
AL539_RS25720	PF02803	Thiolase, C-terminal domain
AL539_RS25725	PF00171	Aldehyde dehydrogenase family
AL539_RS25730	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_RS25730	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_RS25730	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_RS25735	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_RS25740	PF16113	AL539_RS25740
AL539_RS25745	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_RS25745	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_RS25750	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_RS25755	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL539_RS25755	PF06481	COX Aromatic Rich Motif
AL539_RS25760	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL539_RS25765	PF00510	Cytochrome c oxidase subunit III
AL539_RS25770	PF03626	AL539_RS25770
AL539_RS25775	PF01040	UbiA prenyltransferase family
AL539_RS25780	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_RS25785	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS25785	PF03466	LysR substrate binding domain
AL539_RS25790	PF01042	Endoribonuclease L-PSP
AL539_RS25795	PF00171	Aldehyde dehydrogenase family
AL539_RS25800	PF01244	Membrane dipeptidase (Peptidase family M19)
AL539_RS25805	PF02028	BCCT family transporter
AL539_RS25815	PF12525	AL539_RS25815
AL539_RS25820	PF12680	SnoaL-like domain
AL539_RS25825	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL539_RS25835	PF00005	ABC transporter
AL539_RS25840	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_RS25845	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS25850	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS25855	PF00775	Dioxygenase
AL539_RS25860	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS25860	PF03466	LysR substrate binding domain
AL539_RS25865	PF13417	Glutathione S-transferase, N-terminal domain
AL539_RS25870	PF01965	DJ-1/PfpI family
AL539_RS25875	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_RS25875	PF03466	LysR substrate binding domain
AL539_RS25880	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL539_RS25880	PF13450	NAD(P)-binding Rossmann-like domain
AL539_RS25885	PF00766	Electron transfer flavoprotein FAD-binding domain
AL539_RS25885	PF01012	Electron transfer flavoprotein domain
AL539_RS25890	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL539_RS25890	PF00364	Biotin-requiring enzyme
AL539_RS25890	PF02817	e3 binding domain
AL539_RS25895	PF02779	Transketolase, pyrimidine binding domain
AL539_RS25895	PF02780	Transketolase, C-terminal domain
AL539_RS25900	PF00676	Dehydrogenase E1 component
AL539_RS25905	PF08883	Dopa 4,5-dioxygenase family
AL539_RS25915	PF00012	Hsp70 protein
AL539_RS25920	PF04314	Protein of unknown function (DUF461)
AL539_RS25955	PF00072	Response regulator receiver domain
AL539_RS25955	PF00486	Transcriptional regulatory protein, C terminal
AL539_RS25960	PF00512	His Kinase A (phospho-acceptor) domain
AL539_RS25965	PF06445	GyrI-like small molecule binding domain
AL539_RS25965	PF10604	Polyketide cyclase / dehydrase and lipid transport
AL539_RS25975	PF00082	Subtilase family
AL539_RS25975	PF01483	Proprotein convertase P-domain
AL539_RS25985	PF00990	GGDEF domain
AL539_RS25985	PF13374	Tetratricopeptide repeat
AL539_RS25995	PF03222	Tryptophan/tyrosine permease family
AL539_RS26000	PF00583	Acetyltransferase (GNAT) family
AL539_RS26005	PF00384	Molybdopterin oxidoreductase
AL539_RS26005	PF01568	Molydopterin dinucleotide binding domain
AL539_RS26005	PF04324	BFD-like [2Fe-2S] binding domain
AL539_RS26005	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_RS26010	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_RS26015	PF00591	Glycosyl transferase family, a/b domain
AL539_RS26015	PF02885	Glycosyl transferase family, helical bundle domain
AL539_RS26020	PF01738	Dienelactone hydrolase family
AL539_RS26025	PF03861	ANTAR domain
AL539_RS26035	PF13379	NMT1-like family
AL539_RS26050	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_RS26055	PF00005	ABC transporter
AL539_RS26060	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL539_RS26060	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL539_RS26060	PF04324	BFD-like [2Fe-2S] binding domain
AL539_RS26060	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_RS26065	PF13806	Rieske-like [2Fe-2S] domain
AL539_RS26070	PF03479	Domain of unknown function (DUF296)
AL539_RS26075	PF00440	Bacterial regulatory proteins, tetR family
AL539_RS26080	PF00043	Glutathione S-transferase, C-terminal domain
AL539_RS26080	PF13417	Glutathione S-transferase, N-terminal domain
AL539_RS26090	PF00072	Response regulator receiver domain
AL539_RS26090	PF07228	Stage II sporulation protein E (SpoIIE)
AL539_RS26095	PF13581	Histidine kinase-like ATPase domain
AL539_RS26105	PF01627	Hpt domain
AL539_RS26110	PF00069	Protein kinase domain
AL539_RS26115	PF00498	FHA domain
AL539_RS26120	PF12790	Type VI secretion lipoprotein