AL539_RS00010 SM00052 Putative diguanylate phosphodiesterase AL539_RS00130 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL539_RS00130 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL539_RS00130 SM00493 AL539_RS00130 AL539_RS00295 SM00470 ParB-like nuclease domain AL539_RS00310 SM00487 DEAD-like helicases superfamily AL539_RS00350 SM00671 Sel1-like repeats. AL539_RS00495 SM00318 Staphylococcal nuclease homologues AL539_RS00635 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AL539_RS00665 SM00382 ATPases associated with a variety of cellular activities AL539_RS00780 SM00487 DEAD-like helicases superfamily AL539_RS00820 SM00382 ATPases associated with a variety of cellular activities AL539_RS00840 SM00327 von Willebrand factor (vWF) type A domain AL539_RS00855 SM00778 Zinc-binding domain of primase-helicase AL539_RS00885 SM00857 Resolvase, N terminal domain AL539_RS00895 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS00965 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS00990 SM00778 Zinc-binding domain of primase-helicase AL539_RS01020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS01150 SM00327 von Willebrand factor (vWF) type A domain AL539_RS01260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS01260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS01275 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS01305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS01440 SM00857 Resolvase, N terminal domain AL539_RS01465 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL539_RS01465 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL539_RS01470 SM00344 helix_turn_helix ASNC type AL539_RS01475 SM00843 AL539_RS01475 AL539_RS01485 SM00382 ATPases associated with a variety of cellular activities AL539_RS01515 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS01515 SM00876 Biotin and Thiamin Synthesis associated domain AL539_RS01610 SM00528 Domain in histone-like proteins of HNS family AL539_RS01665 SM00052 Putative diguanylate phosphodiesterase AL539_RS01680 SM00840 AL539_RS01680 AL539_RS01755 SM01131 AL539_RS01755 AL539_RS01765 SM00382 ATPases associated with a variety of cellular activities AL539_RS01770 SM00382 ATPases associated with a variety of cellular activities AL539_RS01790 SM00382 ATPases associated with a variety of cellular activities AL539_RS01845 SM00155 Phospholipase D. Active site motifs. AL539_RS01875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_RS01875 SM00382 ATPases associated with a variety of cellular activities AL539_RS01895 SM00382 ATPases associated with a variety of cellular activities AL539_RS01945 SM00387 Histidine kinase-like ATPases AL539_RS01950 SM00448 cheY-homologous receiver domain AL539_RS01950 SM00862 Transcriptional regulatory protein, C terminal AL539_RS01960 SM00487 DEAD-like helicases superfamily AL539_RS01960 SM00490 helicase superfamily c-terminal domain AL539_RS01965 SM00363 S4 RNA-binding domain AL539_RS01995 SM00382 ATPases associated with a variety of cellular activities AL539_RS02090 SM00448 cheY-homologous receiver domain AL539_RS02095 SM00387 Histidine kinase-like ATPases AL539_RS02115 SM00382 ATPases associated with a variety of cellular activities AL539_RS02120 SM00382 ATPases associated with a variety of cellular activities AL539_RS02145 SM00267 diguanylate cyclase AL539_RS02160 SM00919 Malic enzyme, NAD binding domain AL539_RS02160 SM01274 AL539_RS02160 AL539_RS02165 SM00487 DEAD-like helicases superfamily AL539_RS02165 SM00490 helicase superfamily c-terminal domain AL539_RS02250 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS02250 SM00866 AL539_RS02250 AL539_RS02265 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL539_RS02290 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS02325 SM00873 B3/4 domain AL539_RS02325 SM00874 tRNA synthetase B5 domain AL539_RS02325 SM00896 Ferredoxin-fold anticodon binding domain AL539_RS02335 SM00411 bacterial (prokaryotic) histone like domain AL539_RS02370 SM00479 AL539_RS02370 AL539_RS02400 SM00855 Phosphoglycerate mutase family AL539_RS02420 SM00382 ATPases associated with a variety of cellular activities AL539_RS02465 SM00245 tail specific protease AL539_RS02475 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS02475 SM00895 AL539_RS02475 AL539_RS02505 SM01130 AL539_RS02505 AL539_RS02510 SM00382 ATPases associated with a variety of cellular activities AL539_RS02530 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL539_RS02540 SM00382 ATPases associated with a variety of cellular activities AL539_RS02545 SM00382 ATPases associated with a variety of cellular activities AL539_RS02760 SM01230 AL539_RS02760 AL539_RS02775 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS02810 SM00052 Putative diguanylate phosphodiesterase AL539_RS02820 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS02850 SM00387 Histidine kinase-like ATPases AL539_RS02850 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS02850 SM00448 cheY-homologous receiver domain AL539_RS02855 SM00052 Putative diguanylate phosphodiesterase AL539_RS02855 SM00267 diguanylate cyclase AL539_RS02865 SM00028 Tetratricopeptide repeats AL539_RS02945 SM00382 ATPases associated with a variety of cellular activities AL539_RS02950 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_RS02950 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS02955 SM00479 AL539_RS02955 AL539_RS02990 SM00028 Tetratricopeptide repeats AL539_RS03055 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_RS03055 SM01134 AL539_RS03055 AL539_RS03070 SM00267 diguanylate cyclase AL539_RS03095 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_RS03095 SM00387 Histidine kinase-like ATPases AL539_RS03100 SM00448 cheY-homologous receiver domain AL539_RS03105 SM00052 Putative diguanylate phosphodiesterase AL539_RS03105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_RS03105 SM00091 PAS domain AL539_RS03105 SM00267 diguanylate cyclase AL539_RS03110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS03140 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL539_RS03145 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS03170 SM00382 ATPases associated with a variety of cellular activities AL539_RS03195 SM00382 ATPases associated with a variety of cellular activities AL539_RS03200 SM00382 ATPases associated with a variety of cellular activities AL539_RS03255 SM00267 diguanylate cyclase AL539_RS03255 SM01079 AL539_RS03255 AL539_RS03260 SM00479 AL539_RS03260 AL539_RS03295 SM00382 ATPases associated with a variety of cellular activities AL539_RS03295 SM00487 DEAD-like helicases superfamily AL539_RS03295 SM00490 helicase superfamily c-terminal domain AL539_RS03295 SM00847 Helicase associated domain (HA2) Add an annotation AL539_RS03370 SM00382 ATPases associated with a variety of cellular activities AL539_RS03370 SM00448 cheY-homologous receiver domain AL539_RS03430 SM00448 cheY-homologous receiver domain AL539_RS03435 SM00267 diguanylate cyclase AL539_RS03450 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS03480 SM01144 AL539_RS03480 AL539_RS03495 SM00852 Probable molybdopterin binding domain AL539_RS03505 SM00382 ATPases associated with a variety of cellular activities AL539_RS03520 SM00382 ATPases associated with a variety of cellular activities AL539_RS03520 SM00448 cheY-homologous receiver domain AL539_RS03525 SM00387 Histidine kinase-like ATPases AL539_RS03525 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS03535 SM00382 ATPases associated with a variety of cellular activities AL539_RS03570 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS03670 SM00860 SMI1 / KNR4 family AL539_RS03705 SM00248 ankyrin repeats AL539_RS03740 SM00382 ATPases associated with a variety of cellular activities AL539_RS03770 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_RS03770 SM00419 helix_turn_helix, cAMP Regulatory protein AL539_RS03820 SM00897 FIST N domain AL539_RS03820 SM01204 AL539_RS03820 AL539_RS03825 SM00387 Histidine kinase-like ATPases AL539_RS03825 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS03825 SM00448 cheY-homologous receiver domain AL539_RS03880 SM00382 ATPases associated with a variety of cellular activities AL539_RS03890 SM00981 AL539_RS03890 AL539_RS03925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_RS03925 SM00245 tail specific protease AL539_RS03930 SM00945 ProQ/FINO family AL539_RS03940 SM00382 ATPases associated with a variety of cellular activities AL539_RS03995 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS04010 SM00382 ATPases associated with a variety of cellular activities AL539_RS04035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS04040 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL539_RS04105 SM00028 Tetratricopeptide repeats AL539_RS04105 SM00267 diguanylate cyclase AL539_RS04110 SM00346 helix_turn_helix isocitrate lyase regulation AL539_RS04150 SM00829 Enoylreductase AL539_RS04155 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS04165 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS04165 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_RS04175 SM00829 Enoylreductase AL539_RS04185 SM00382 ATPases associated with a variety of cellular activities AL539_RS04195 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS04195 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_RS04245 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS04270 SM00020 Trypsin-like serine protease AL539_RS04270 SM00495 Chitin-binding domain type 3 AL539_RS04305 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS04305 SM00895 AL539_RS04305 AL539_RS04410 SM00382 ATPases associated with a variety of cellular activities AL539_RS04450 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS04550 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS04575 SM00382 ATPases associated with a variety of cellular activities AL539_RS04590 SM01350 AL539_RS04590 AL539_RS04605 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS04605 SM00871 Bacterial transcription activator, effector binding domain AL539_RS04615 SM00448 cheY-homologous receiver domain AL539_RS04620 SM00091 PAS domain AL539_RS04620 SM00387 Histidine kinase-like ATPases AL539_RS04705 SM00155 Phospholipase D. Active site motifs. AL539_RS04750 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL539_RS04760 SM01266 AL539_RS04760 AL539_RS05125 SM00860 SMI1 / KNR4 family AL539_RS05535 SM00954 Region found in RelA / SpoT proteins AL539_RS05560 SM00091 PAS domain AL539_RS05560 SM00382 ATPases associated with a variety of cellular activities AL539_RS05595 SM00387 Histidine kinase-like ATPases AL539_RS05595 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS05595 SM00448 cheY-homologous receiver domain AL539_RS05620 SM00052 Putative diguanylate phosphodiesterase AL539_RS05635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS05635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS05650 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS05675 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_RS05675 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS05680 SM00479 AL539_RS05680 AL539_RS05685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS05685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS05695 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS05700 SM00421 helix_turn_helix, Lux Regulon AL539_RS05700 SM00448 cheY-homologous receiver domain AL539_RS05705 SM00387 Histidine kinase-like ATPases AL539_RS05705 SM01049 AL539_RS05705 AL539_RS05735 SM00849 Metallo-beta-lactamase superfamily AL539_RS05825 SM00434 DNA Topoisomerase IV AL539_RS05855 SM00852 Probable molybdopterin binding domain AL539_RS05910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_RS05910 SM00465 GIY-YIG type nucleases (URI domain) AL539_RS05915 SM00421 helix_turn_helix, Lux Regulon AL539_RS05915 SM00448 cheY-homologous receiver domain AL539_RS05920 SM00486 DNA polymerase type-B family AL539_RS05930 SM00841 Elongation factor P, C-terminal AL539_RS05930 SM01185 AL539_RS05930 AL539_RS05940 SM00363 S4 RNA-binding domain AL539_RS05955 SM00481 DNA polymerase alpha chain like domain AL539_RS05995 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_RS05995 SM00419 helix_turn_helix, cAMP Regulatory protein AL539_RS06020 SM00387 Histidine kinase-like ATPases AL539_RS06020 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS06020 SM00448 cheY-homologous receiver domain AL539_RS06070 SM00052 Putative diguanylate phosphodiesterase AL539_RS06070 SM00091 PAS domain AL539_RS06075 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS06110 SM00448 cheY-homologous receiver domain AL539_RS06110 SM00862 Transcriptional regulatory protein, C terminal AL539_RS06115 SM00387 Histidine kinase-like ATPases AL539_RS06115 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS06165 SM00382 ATPases associated with a variety of cellular activities AL539_RS06220 SM00421 helix_turn_helix, Lux Regulon AL539_RS06220 SM00448 cheY-homologous receiver domain AL539_RS06225 SM00387 Histidine kinase-like ATPases AL539_RS06225 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS06240 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS06285 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL539_RS06290 SM00028 Tetratricopeptide repeats AL539_RS06300 SM00411 bacterial (prokaryotic) histone like domain AL539_RS06305 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS06320 SM00822 AL539_RS06320 AL539_RS06335 SM00481 DNA polymerase alpha chain like domain AL539_RS06340 SM00260 Two component signalling adaptor domain AL539_RS06340 SM00448 cheY-homologous receiver domain AL539_RS06415 SM00825 Beta-ketoacyl synthase AL539_RS06425 SM00822 AL539_RS06425 AL539_RS06430 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL539_RS06460 SM00363 S4 RNA-binding domain AL539_RS06470 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS06485 SM00226 Low molecular weight phosphatase family AL539_RS06535 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS06560 SM00267 diguanylate cyclase AL539_RS06565 SM00642 Alpha-amylase domain AL539_RS06570 SM00382 ATPases associated with a variety of cellular activities AL539_RS06610 SM00382 ATPases associated with a variety of cellular activities AL539_RS06615 SM00382 ATPases associated with a variety of cellular activities AL539_RS06655 SM00852 Probable molybdopterin binding domain AL539_RS06660 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS06675 SM00382 ATPases associated with a variety of cellular activities AL539_RS06675 SM00448 cheY-homologous receiver domain AL539_RS06680 SM00487 DEAD-like helicases superfamily AL539_RS06680 SM00490 helicase superfamily c-terminal domain AL539_RS06715 SM00900 AL539_RS06715 AL539_RS06725 SM00478 endonuclease III AL539_RS06725 SM00525 AL539_RS06725 AL539_RS06750 SM00479 AL539_RS06750 AL539_RS06810 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL539_RS06865 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL539_RS06865 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL539_RS06865 SM00493 AL539_RS06865 AL539_RS06890 SM00870 AL539_RS06890 AL539_RS06910 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS06920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS06920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS06945 SM00098 Alkaline phosphatase homologues AL539_RS06990 SM00493 AL539_RS06990 AL539_RS07000 SM00382 ATPases associated with a variety of cellular activities AL539_RS07020 SM00448 cheY-homologous receiver domain AL539_RS07070 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL539_RS07085 SM00825 Beta-ketoacyl synthase AL539_RS07135 SM00463 Small MutS-related domain AL539_RS07140 SM00855 Phosphoglycerate mutase family AL539_RS07275 SM00382 ATPases associated with a variety of cellular activities AL539_RS07285 SM00260 Two component signalling adaptor domain AL539_RS07290 SM00260 Two component signalling adaptor domain AL539_RS07300 SM00448 cheY-homologous receiver domain AL539_RS07305 SM00073 Histidine Phosphotransfer domain AL539_RS07305 SM00260 Two component signalling adaptor domain AL539_RS07305 SM00387 Histidine kinase-like ATPases AL539_RS07305 SM01231 AL539_RS07305 AL539_RS07315 SM00448 cheY-homologous receiver domain AL539_RS07330 SM00382 ATPases associated with a variety of cellular activities AL539_RS07330 SM00962 SRP54-type protein, GTPase domain AL539_RS07395 SM00382 ATPases associated with a variety of cellular activities AL539_RS07420 SM00382 ATPases associated with a variety of cellular activities AL539_RS07420 SM00448 cheY-homologous receiver domain AL539_RS07425 SM00387 Histidine kinase-like ATPases AL539_RS07425 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS07430 SM00382 ATPases associated with a variety of cellular activities AL539_RS07525 SM01130 AL539_RS07525 AL539_RS07550 SM00028 Tetratricopeptide repeats AL539_RS07635 SM00479 AL539_RS07635 AL539_RS07650 SM00849 Metallo-beta-lactamase superfamily AL539_RS07655 SM00257 Lysin motif AL539_RS07670 SM00938 Nitrogen regulatory protein P-II AL539_RS07680 SM00977 TilS substrate C-terminal domain AL539_RS07690 SM00481 DNA polymerase alpha chain like domain AL539_RS07720 SM00935 Outer membrane protein (OmpH-like) AL539_RS07730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_RS07775 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS07835 SM00849 Metallo-beta-lactamase superfamily AL539_RS07900 SM00495 Chitin-binding domain type 3 AL539_RS07900 SM00636 AL539_RS07900 AL539_RS07915 SM00487 DEAD-like helicases superfamily AL539_RS07915 SM00490 helicase superfamily c-terminal domain AL539_RS07930 SM00267 diguanylate cyclase AL539_RS07930 SM00448 cheY-homologous receiver domain AL539_RS07960 SM00900 AL539_RS07960 AL539_RS08015 SM00464 Found in ATP-dependent protease La (LON) AL539_RS08045 SM00267 diguanylate cyclase AL539_RS08060 SM00925 MltA specific insert domain AL539_RS08170 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_RS08170 SM01134 AL539_RS08170 AL539_RS08200 SM00354 helix_turn _helix lactose operon repressor AL539_RS08215 SM00421 helix_turn_helix, Lux Regulon AL539_RS08260 SM00838 Elongation factor G C-terminus AL539_RS08260 SM00889 Elongation factor G, domain IV AL539_RS08265 SM00382 ATPases associated with a variety of cellular activities AL539_RS08295 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL539_RS08300 SM01133 AL539_RS08300 AL539_RS08355 SM00052 Putative diguanylate phosphodiesterase AL539_RS08355 SM00091 PAS domain AL539_RS08355 SM00267 diguanylate cyclase AL539_RS08375 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS08380 SM00028 Tetratricopeptide repeats AL539_RS08385 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS08385 SM00322 K homology RNA-binding domain AL539_RS08390 SM01387 AL539_RS08390 AL539_RS08410 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS08450 SM00382 ATPases associated with a variety of cellular activities AL539_RS08460 SM01103 AL539_RS08460 AL539_RS08485 SM00363 S4 RNA-binding domain AL539_RS08525 SM00091 PAS domain AL539_RS08525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS08525 SM00387 Histidine kinase-like ATPases AL539_RS08525 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS08525 SM00448 cheY-homologous receiver domain AL539_RS08545 SM00382 ATPases associated with a variety of cellular activities AL539_RS08550 SM00382 ATPases associated with a variety of cellular activities AL539_RS08570 SM01068 Putative carbohydrate binding domain AL539_RS08580 SM00382 ATPases associated with a variety of cellular activities AL539_RS08600 SM00938 Nitrogen regulatory protein P-II AL539_RS08625 SM00487 DEAD-like helicases superfamily AL539_RS08625 SM00490 helicase superfamily c-terminal domain AL539_RS08625 SM00847 Helicase associated domain (HA2) Add an annotation AL539_RS08680 SM00382 ATPases associated with a variety of cellular activities AL539_RS08690 SM00947 Carbonic anhydrase AL539_RS08720 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS08720 SM00895 AL539_RS08720 AL539_RS08725 SM00644 AL539_RS08725 AL539_RS08790 SM00382 ATPases associated with a variety of cellular activities AL539_RS08790 SM00962 SRP54-type protein, GTPase domain AL539_RS08790 SM00963 SRP54-type protein, helical bundle domain AL539_RS08800 SM01091 Transporter associated domain AL539_RS08830 SM00829 Enoylreductase AL539_RS08910 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL539_RS08920 SM00382 ATPases associated with a variety of cellular activities AL539_RS08930 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL539_RS08930 SM00534 ATPase domain of DNA mismatch repair MUTS family AL539_RS08940 SM00257 Lysin motif AL539_RS08975 SM01192 AL539_RS08975 AL539_RS08975 SM01193 AL539_RS08975 AL539_RS08990 SM00954 Region found in RelA / SpoT proteins AL539_RS09010 SM00073 Histidine Phosphotransfer domain AL539_RS09010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS09010 SM00387 Histidine kinase-like ATPases AL539_RS09010 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS09010 SM00448 cheY-homologous receiver domain AL539_RS09035 SM00358 Double-stranded RNA binding motif AL539_RS09035 SM00535 Ribonuclease III family AL539_RS09045 SM00838 Elongation factor G C-terminus AL539_RS09185 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS09200 SM00861 Transketolase, pyrimidine binding domain AL539_RS09220 SM00731 SprT homologues. AL539_RS09245 SM00732 Likely ribonuclease with RNase H fold. AL539_RS09255 SM00382 ATPases associated with a variety of cellular activities AL539_RS09275 SM01152 AL539_RS09275 AL539_RS09290 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS09310 SM00478 endonuclease III AL539_RS09330 SM00849 Metallo-beta-lactamase superfamily AL539_RS09465 SM00478 endonuclease III AL539_RS09485 SM00849 Metallo-beta-lactamase superfamily AL539_RS09660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS09660 SM01049 AL539_RS09660 AL539_RS09740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS09745 SM00354 helix_turn _helix lactose operon repressor AL539_RS09775 SM00495 Chitin-binding domain type 3 AL539_RS09830 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS09875 SM00563 Phosphate acyltransferases AL539_RS09910 SM00382 ATPases associated with a variety of cellular activities AL539_RS09920 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS09935 SM00382 ATPases associated with a variety of cellular activities AL539_RS09965 SM00924 MgtE intracellular N domain AL539_RS09995 SM00487 DEAD-like helicases superfamily AL539_RS09995 SM00490 helicase superfamily c-terminal domain AL539_RS10000 SM00670 Large family of predicted nucleotide-binding domains AL539_RS10020 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS10060 SM00052 Putative diguanylate phosphodiesterase AL539_RS10060 SM00267 diguanylate cyclase AL539_RS10070 SM00421 helix_turn_helix, Lux Regulon AL539_RS10105 SM01018 B12 binding domain AL539_RS10225 SM01005 Alanine racemase, C-terminal domain AL539_RS10285 SM00965 Secretin and TonB N terminus short domain AL539_RS10305 SM00842 Cell division protein FtsA AL539_RS10350 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL539_RS10390 SM00919 Malic enzyme, NAD binding domain AL539_RS10390 SM01274 AL539_RS10390 AL539_RS10410 SM00838 Elongation factor G C-terminus AL539_RS10410 SM00889 Elongation factor G, domain IV AL539_RS10450 SM00320 WD40 repeats AL539_RS10490 SM00382 ATPases associated with a variety of cellular activities AL539_RS10515 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_RS10515 SM00419 helix_turn_helix, cAMP Regulatory protein AL539_RS10520 SM01150 AL539_RS10520 AL539_RS10545 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS10595 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL539_RS10600 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS10600 SM00357 Cold shock protein domain AL539_RS10600 SM00955 AL539_RS10600 AL539_RS10615 SM00671 Sel1-like repeats. AL539_RS10625 SM00788 Adenylosuccinate synthetase AL539_RS10635 SM00244 prohibitin homologues AL539_RS10640 SM00244 prohibitin homologues AL539_RS10660 SM00853 MutL C terminal dimerisation domain AL539_RS10660 SM01340 AL539_RS10660 AL539_RS10665 SM00257 Lysin motif AL539_RS10665 SM00646 AL539_RS10665 AL539_RS10745 SM00479 AL539_RS10745 AL539_RS10775 SM00450 Rhodanese Homology Domain AL539_RS10790 SM00971 Serine acetyltransferase, N-terminal AL539_RS10845 SM00841 Elongation factor P, C-terminal AL539_RS10845 SM01185 AL539_RS10845 AL539_RS10870 SM00883 Chaperonin 10 Kd subunit AL539_RS10895 SM00448 cheY-homologous receiver domain AL539_RS10895 SM00862 Transcriptional regulatory protein, C terminal AL539_RS10900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS10900 SM00387 Histidine kinase-like ATPases AL539_RS10900 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS10935 SM00421 helix_turn_helix, Lux Regulon AL539_RS10935 SM00448 cheY-homologous receiver domain AL539_RS10940 SM01091 Transporter associated domain AL539_RS10970 SM00387 Histidine kinase-like ATPases AL539_RS10970 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS10970 SM00448 cheY-homologous receiver domain AL539_RS10985 SM00479 AL539_RS10985 AL539_RS11005 SM00878 Biotin carboxylase C-terminal domain AL539_RS11035 SM00382 ATPases associated with a variety of cellular activities AL539_RS11115 SM00862 Transcriptional regulatory protein, C terminal AL539_RS11120 SM00422 helix_turn_helix, mercury resistance AL539_RS11130 SM00798 AICARFT/IMPCHase bienzyme AL539_RS11130 SM00851 MGS-like domain AL539_RS11135 SM01209 AL539_RS11135 AL539_RS11135 SM01210 AL539_RS11135 AL539_RS11145 SM00411 bacterial (prokaryotic) histone like domain AL539_RS11150 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS11165 SM00986 Uracil DNA glycosylase superfamily AL539_RS11165 SM00987 UreE urease accessory protein, C-terminal domain AL539_RS11185 SM00663 RNA polymerase I subunit A N-terminus AL539_RS11210 SM00649 Ribosomal protein L11/L12 AL539_RS11215 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL539_RS11215 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL539_RS11275 SM00155 Phospholipase D. Active site motifs. AL539_RS11340 SM00360 RNA recognition motif AL539_RS11405 SM00563 Phosphate acyltransferases AL539_RS11430 SM00450 Rhodanese Homology Domain AL539_RS11450 SM00382 ATPases associated with a variety of cellular activities AL539_RS11455 SM00382 ATPases associated with a variety of cellular activities AL539_RS11455 SM00962 SRP54-type protein, GTPase domain AL539_RS11455 SM00963 SRP54-type protein, helical bundle domain AL539_RS11515 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS11520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_RS11525 SM00052 Putative diguanylate phosphodiesterase AL539_RS11555 SM01144 AL539_RS11555 AL539_RS11560 SM00052 Putative diguanylate phosphodiesterase AL539_RS11560 SM00897 FIST N domain AL539_RS11560 SM01204 AL539_RS11560 AL539_RS11595 SM01219 AL539_RS11595 AL539_RS11620 SM00028 Tetratricopeptide repeats AL539_RS11680 SM00357 Cold shock protein domain AL539_RS11680 SM00382 ATPases associated with a variety of cellular activities AL539_RS11680 SM00959 Rho termination factor, N-terminal domain AL539_RS11690 SM00487 DEAD-like helicases superfamily AL539_RS11690 SM00490 helicase superfamily c-terminal domain AL539_RS11715 SM00341 Helicase and RNase D C-terminal AL539_RS11715 SM00487 DEAD-like helicases superfamily AL539_RS11715 SM00490 helicase superfamily c-terminal domain AL539_RS11715 SM00956 AL539_RS11715 AL539_RS11725 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS11790 SM00876 Biotin and Thiamin Synthesis associated domain AL539_RS11980 SM01001 AIR carboxylase AL539_RS12005 SM00257 Lysin motif AL539_RS12075 SM00563 Phosphate acyltransferases AL539_RS12085 SM00382 ATPases associated with a variety of cellular activities AL539_RS12125 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS12145 SM00382 ATPases associated with a variety of cellular activities AL539_RS12185 SM00470 ParB-like nuclease domain AL539_RS12200 SM01228 AL539_RS12200 AL539_RS12225 SM01234 AL539_RS12225 AL539_RS12240 SM00382 ATPases associated with a variety of cellular activities AL539_RS12250 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS12250 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_RS12260 SM00382 ATPases associated with a variety of cellular activities AL539_RS12260 SM00760 Bacterial dnaA protein helix-turn-helix domain AL539_RS12265 SM00480 DNA polymerase III beta subunit AL539_RS12275 SM00387 Histidine kinase-like ATPases AL539_RS12275 SM00433 TopoisomeraseII AL539_RS12305 SM00642 Alpha-amylase domain AL539_RS12345 SM00829 Enoylreductase AL539_RS12485 SM00382 ATPases associated with a variety of cellular activities AL539_RS12515 SM00354 helix_turn _helix lactose operon repressor AL539_RS12580 SM00344 helix_turn_helix ASNC type AL539_RS12585 SM00052 Putative diguanylate phosphodiesterase AL539_RS12585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_RS12585 SM00091 PAS domain AL539_RS12585 SM00267 diguanylate cyclase AL539_RS12625 SM00382 ATPases associated with a variety of cellular activities AL539_RS12630 SM00749 bacterial OsmY and nodulation domain AL539_RS12650 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL539_RS12650 SM00195 Dual specificity phosphatase, catalytic domain AL539_RS12650 SM00404 Protein tyrosine phosphatase, catalytic domain motif AL539_RS12685 SM00052 Putative diguanylate phosphodiesterase AL539_RS12685 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_RS12685 SM00091 PAS domain AL539_RS12685 SM00267 diguanylate cyclase AL539_RS12750 SM01004 Delta-aminolevulinic acid dehydratase AL539_RS12765 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL539_RS12765 SM00474 3'-5' exonuclease AL539_RS12765 SM00475 5'-3' exonuclease AL539_RS12765 SM00482 DNA polymerase A domain AL539_RS12800 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS12810 SM00052 Putative diguanylate phosphodiesterase AL539_RS12810 SM00267 diguanylate cyclase AL539_RS12810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS12815 SM00382 ATPases associated with a variety of cellular activities AL539_RS12815 SM00448 cheY-homologous receiver domain AL539_RS12820 SM00091 PAS domain AL539_RS12820 SM00387 Histidine kinase-like ATPases AL539_RS12820 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS12830 SM01230 AL539_RS12830 AL539_RS12880 SM00363 S4 RNA-binding domain AL539_RS12895 SM00382 ATPases associated with a variety of cellular activities AL539_RS12975 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS12975 SM00732 Likely ribonuclease with RNase H fold. AL539_RS12995 SM00448 cheY-homologous receiver domain AL539_RS12995 SM00862 Transcriptional regulatory protein, C terminal AL539_RS13000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS13000 SM00387 Histidine kinase-like ATPases AL539_RS13000 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS13010 SM00487 DEAD-like helicases superfamily AL539_RS13010 SM00490 helicase superfamily c-terminal domain AL539_RS13020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS13020 SM00954 Region found in RelA / SpoT proteins AL539_RS13025 SM01409 AL539_RS13025 AL539_RS13030 SM00072 Guanylate kinase homologues. AL539_RS13040 SM00028 Tetratricopeptide repeats AL539_RS13095 SM00382 ATPases associated with a variety of cellular activities AL539_RS13100 SM00382 ATPases associated with a variety of cellular activities AL539_RS13150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS13150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS13150 SM01049 AL539_RS13150 AL539_RS13175 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL539_RS13175 SM01232 AL539_RS13175 AL539_RS13195 SM00672 Putative lipopolysaccharide-modifying enzyme. AL539_RS13390 SM00984 UDP binding domain AL539_RS13395 SM00849 Metallo-beta-lactamase superfamily AL539_RS13395 SM01027 Beta-Casp domain AL539_RS13485 SM00382 ATPases associated with a variety of cellular activities AL539_RS13485 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_RS13500 SM00354 helix_turn _helix lactose operon repressor AL539_RS13505 SM00487 DEAD-like helicases superfamily AL539_RS13505 SM00490 helicase superfamily c-terminal domain AL539_RS13520 SM01403 AL539_RS13520 AL539_RS13540 SM01382 AL539_RS13540 AL539_RS13540 SM01383 AL539_RS13540 AL539_RS13555 SM00322 K homology RNA-binding domain AL539_RS13575 SM01374 AL539_RS13575 AL539_RS13580 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL539_RS13645 SM00363 S4 RNA-binding domain AL539_RS13645 SM01390 AL539_RS13645 AL539_RS13650 SM00662 RNA polymerases D AL539_RS13680 SM00487 DEAD-like helicases superfamily AL539_RS13680 SM00490 helicase superfamily c-terminal domain AL539_RS13735 SM00382 ATPases associated with a variety of cellular activities AL539_RS13795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS13815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS13865 SM00382 ATPases associated with a variety of cellular activities AL539_RS13965 SM00650 Ribosomal RNA adenine dimethylases AL539_RS13985 SM00271 DnaJ molecular chaperone homology domain AL539_RS14005 SM01329 AL539_RS14005 AL539_RS14010 SM00917 LeuA allosteric (dimerisation) domain AL539_RS14025 SM00014 Acid phosphatase homologues AL539_RS14055 SM00267 diguanylate cyclase AL539_RS14060 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS14070 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_RS14070 SM01134 AL539_RS14070 AL539_RS14115 SM00487 DEAD-like helicases superfamily AL539_RS14140 SM01120 AL539_RS14140 AL539_RS14170 SM00563 Phosphate acyltransferases AL539_RS14205 SM00357 Cold shock protein domain AL539_RS14220 SM00357 Cold shock protein domain AL539_RS14285 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS14300 SM00400 zinc finger AL539_RS14300 SM00493 AL539_RS14300 AL539_RS14300 SM00766 DNA primase DnaG DnaB-binding AL539_RS14325 SM01207 AL539_RS14325 AL539_RS14330 SM00905 Dihydroneopterin aldolase AL539_RS14350 SM00382 ATPases associated with a variety of cellular activities AL539_RS14365 SM00287 Bacterial SH3 domain homologues AL539_RS14380 SM00880 AL539_RS14380 AL539_RS14380 SM01118 AL539_RS14380 AL539_RS14390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS14430 SM00387 Histidine kinase-like ATPases AL539_RS14430 SM00433 TopoisomeraseII AL539_RS14435 SM00434 DNA Topoisomerase IV AL539_RS14440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_RS14445 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_RS14505 SM00749 bacterial OsmY and nodulation domain AL539_RS14595 SM00842 Cell division protein FtsA AL539_RS14600 SM00864 Tubulin/FtsZ family, GTPase domain AL539_RS14600 SM00865 Tubulin/FtsZ family, C-terminal domain AL539_RS14615 SM00957 SecA DEAD-like domain AL539_RS14615 SM00958 SecA preprotein cross-linking domain AL539_RS14630 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL539_RS14635 SM00851 MGS-like domain AL539_RS14635 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL539_RS14705 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS14710 SM00091 PAS domain AL539_RS14710 SM00267 diguanylate cyclase AL539_RS14715 SM00073 Histidine Phosphotransfer domain AL539_RS14715 SM00091 PAS domain AL539_RS14715 SM00387 Histidine kinase-like ATPases AL539_RS14715 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS14715 SM00448 cheY-homologous receiver domain AL539_RS14725 SM00448 cheY-homologous receiver domain AL539_RS14725 SM00862 Transcriptional regulatory protein, C terminal AL539_RS14780 SM00518 AP endonuclease family 2 AL539_RS14790 SM00986 Uracil DNA glycosylase superfamily AL539_RS14790 SM00987 UreE urease accessory protein, C-terminal domain AL539_RS14815 SM00487 DEAD-like helicases superfamily AL539_RS14815 SM00490 helicase superfamily c-terminal domain AL539_RS14860 SM00382 ATPases associated with a variety of cellular activities AL539_RS14880 SM00927 DNA mismatch repair enzyme MutH AL539_RS14890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_RS14910 SM01154 AL539_RS14910 AL539_RS14925 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_RS14940 SM00904 Riboflavin kinase AL539_RS14965 SM00226 Low molecular weight phosphatase family AL539_RS14970 SM00448 cheY-homologous receiver domain AL539_RS14970 SM00850 LytTr DNA-binding domain AL539_RS15015 SM00830 Chorismate mutase type II AL539_RS15030 SM00382 ATPases associated with a variety of cellular activities AL539_RS15050 SM00830 Chorismate mutase type II AL539_RS15060 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS15070 SM00363 S4 RNA-binding domain AL539_RS15080 SM00382 ATPases associated with a variety of cellular activities AL539_RS15080 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_RS15165 SM00448 cheY-homologous receiver domain AL539_RS15165 SM00862 Transcriptional regulatory protein, C terminal AL539_RS15170 SM00091 PAS domain AL539_RS15170 SM00387 Histidine kinase-like ATPases AL539_RS15170 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS15200 SM00382 ATPases associated with a variety of cellular activities AL539_RS15240 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS15245 SM00020 Trypsin-like serine protease AL539_RS15260 SM01323 AL539_RS15260 AL539_RS15315 SM00271 DnaJ molecular chaperone homology domain AL539_RS15340 SM00562 AL539_RS15340 AL539_RS15350 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS15370 SM00564 beta-propeller repeat AL539_RS15375 SM00382 ATPases associated with a variety of cellular activities AL539_RS15395 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS15395 SM01240 AL539_RS15395 AL539_RS15410 SM00495 Chitin-binding domain type 3 AL539_RS15515 SM00052 Putative diguanylate phosphodiesterase AL539_RS15515 SM00267 diguanylate cyclase AL539_RS15520 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS15525 SM00052 Putative diguanylate phosphodiesterase AL539_RS15545 SM00267 diguanylate cyclase AL539_RS15550 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS15555 SM00873 B3/4 domain AL539_RS15645 SM00857 Resolvase, N terminal domain AL539_RS15655 SM00487 DEAD-like helicases superfamily AL539_RS15765 SM00271 DnaJ molecular chaperone homology domain AL539_RS15810 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS15815 SM01211 AL539_RS15815 AL539_RS15870 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL539_RS15920 SM00861 Transketolase, pyrimidine binding domain AL539_RS15945 SM00981 AL539_RS15945 AL539_RS15970 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL539_RS15970 SM00475 5'-3' exonuclease AL539_RS15980 SM00267 diguanylate cyclase AL539_RS15985 SM00028 Tetratricopeptide repeats AL539_RS16015 SM00382 ATPases associated with a variety of cellular activities AL539_RS16015 SM00930 AL539_RS16015 AL539_RS16025 SM00354 helix_turn _helix lactose operon repressor AL539_RS16035 SM00642 Alpha-amylase domain AL539_RS16045 SM00862 Transcriptional regulatory protein, C terminal AL539_RS16060 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS16075 SM00936 Penicillin-binding protein 5, C-terminal domain AL539_RS16130 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS16130 SM01091 Transporter associated domain AL539_RS16145 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS16275 SM01400 AL539_RS16275 AL539_RS16295 SM00937 AL539_RS16295 AL539_RS16330 SM00363 S4 RNA-binding domain AL539_RS16335 SM00463 Small MutS-related domain AL539_RS16360 SM01081 Putative carbohydrate binding domain AL539_RS16440 SM00858 AL539_RS16440 AL539_RS16445 SM00260 Two component signalling adaptor domain AL539_RS16445 SM00448 cheY-homologous receiver domain AL539_RS16450 SM00138 Methyltransferase, chemotaxis proteins AL539_RS16495 SM00047 Lysozyme subfamily 2 AL539_RS16560 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL539_RS16565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_RS16565 SM00292 breast cancer carboxy-terminal domain AL539_RS16565 SM00532 Ligase N family AL539_RS16585 SM00244 prohibitin homologues AL539_RS16620 SM00938 Nitrogen regulatory protein P-II AL539_RS16625 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS16655 SM00862 Transcriptional regulatory protein, C terminal AL539_RS16660 SM00387 Histidine kinase-like ATPases AL539_RS16680 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL539_RS16790 SM00861 Transketolase, pyrimidine binding domain AL539_RS16805 SM00881 CoA binding domain AL539_RS16815 SM00382 ATPases associated with a variety of cellular activities AL539_RS16825 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS16830 SM00899 AL539_RS16830 AL539_RS16855 SM00836 DALR anticodon binding domain AL539_RS16855 SM01016 Arginyl tRNA synthetase N terminal dom AL539_RS16875 SM00487 DEAD-like helicases superfamily AL539_RS16875 SM00491 AL539_RS16875 AL539_RS16905 SM00474 3'-5' exonuclease AL539_RS16955 SM00825 Beta-ketoacyl synthase AL539_RS16960 SM00822 AL539_RS16960 AL539_RS16970 SM00825 Beta-ketoacyl synthase AL539_RS17030 SM00563 Phosphate acyltransferases AL539_RS17060 SM00487 DEAD-like helicases superfamily AL539_RS17060 SM00490 helicase superfamily c-terminal domain AL539_RS17110 SM00382 ATPases associated with a variety of cellular activities AL539_RS17110 SM00448 cheY-homologous receiver domain AL539_RS17115 SM00387 Histidine kinase-like ATPases AL539_RS17115 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS17135 SM00382 ATPases associated with a variety of cellular activities AL539_RS17135 SM00994 ClpX C4-type zinc finger AL539_RS17135 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_RS17140 SM00382 ATPases associated with a variety of cellular activities AL539_RS17140 SM00464 Found in ATP-dependent protease La (LON) AL539_RS17145 SM00411 bacterial (prokaryotic) histone like domain AL539_RS17155 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_RS17165 SM01144 AL539_RS17165 AL539_RS17170 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS17175 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS17205 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL539_RS17225 SM00563 Phosphate acyltransferases AL539_RS17235 SM00978 AL539_RS17235 AL539_RS17300 SM00344 helix_turn_helix ASNC type AL539_RS17330 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS17330 SM00267 diguanylate cyclase AL539_RS17345 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS17365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS17365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS17415 SM00487 DEAD-like helicases superfamily AL539_RS17415 SM00490 helicase superfamily c-terminal domain AL539_RS17415 SM00982 AL539_RS17415 AL539_RS17415 SM01058 CarD-like/TRCF domain AL539_RS17430 SM00382 ATPases associated with a variety of cellular activities AL539_RS17445 SM00849 Metallo-beta-lactamase superfamily AL539_RS17450 SM00382 ATPases associated with a variety of cellular activities AL539_RS17480 SM00763 PrkA AAA domain AL539_RS17530 SM00382 ATPases associated with a variety of cellular activities AL539_RS17535 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS17535 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_RS17550 SM01276 AL539_RS17550 AL539_RS17575 SM00491 AL539_RS17575 AL539_RS17600 SM00357 Cold shock protein domain AL539_RS17610 SM00382 ATPases associated with a variety of cellular activities AL539_RS17610 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_RS17615 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS17645 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL539_RS17645 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL539_RS17645 SM00493 AL539_RS17645 AL539_RS17680 SM00354 helix_turn _helix lactose operon repressor AL539_RS17690 SM00448 cheY-homologous receiver domain AL539_RS17690 SM00862 Transcriptional regulatory protein, C terminal AL539_RS17775 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_RS17780 SM00382 ATPases associated with a variety of cellular activities AL539_RS17835 SM00028 Tetratricopeptide repeats AL539_RS17890 SM00331 Sigma factor PP2C-like phosphatases AL539_RS17890 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL539_RS17935 SM00382 ATPases associated with a variety of cellular activities AL539_RS17935 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_RS18005 SM00382 ATPases associated with a variety of cellular activities AL539_RS18045 SM01005 Alanine racemase, C-terminal domain AL539_RS18050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS18050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS18065 SM00642 Alpha-amylase domain AL539_RS18080 SM00880 AL539_RS18080 AL539_RS18105 SM00267 diguanylate cyclase AL539_RS18115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_RS18115 SM00267 diguanylate cyclase AL539_RS18235 SM00387 Histidine kinase-like ATPases AL539_RS18240 SM00421 helix_turn_helix, Lux Regulon AL539_RS18240 SM00448 cheY-homologous receiver domain AL539_RS18290 SM00450 Rhodanese Homology Domain AL539_RS18295 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_RS18335 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS18375 SM00382 ATPases associated with a variety of cellular activities AL539_RS18385 SM00267 diguanylate cyclase AL539_RS18385 SM00448 cheY-homologous receiver domain AL539_RS18390 SM00267 diguanylate cyclase AL539_RS18420 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL539_RS18420 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL539_RS18430 SM00387 Histidine kinase-like ATPases AL539_RS18430 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS18435 SM00448 cheY-homologous receiver domain AL539_RS18435 SM00862 Transcriptional regulatory protein, C terminal AL539_RS18505 SM00881 CoA binding domain AL539_RS18530 SM00091 PAS domain AL539_RS18530 SM00267 diguanylate cyclase AL539_RS18530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS18540 SM00796 Allophanate hydrolase subunit 1 AL539_RS18545 SM00797 Allophanate hydrolase subunit 2 AL539_RS18560 SM00382 ATPases associated with a variety of cellular activities AL539_RS18575 SM00052 Putative diguanylate phosphodiesterase AL539_RS18575 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_RS18575 SM00267 diguanylate cyclase AL539_RS18585 SM00271 DnaJ molecular chaperone homology domain AL539_RS18650 SM00782 PhnA Zinc-Ribbon AL539_RS18685 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_RS18690 SM00867 YceI-like domain AL539_RS18710 SM00052 Putative diguanylate phosphodiesterase AL539_RS18715 SM00487 DEAD-like helicases superfamily AL539_RS18715 SM00490 helicase superfamily c-terminal domain AL539_RS18730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS18770 SM00495 Chitin-binding domain type 3 AL539_RS18770 SM00636 AL539_RS18770 AL539_RS18780 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS18795 SM00382 ATPases associated with a variety of cellular activities AL539_RS18805 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS18805 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_RS18815 SM00052 Putative diguanylate phosphodiesterase AL539_RS18830 SM00354 helix_turn _helix lactose operon repressor AL539_RS18880 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS18910 SM00849 Metallo-beta-lactamase superfamily AL539_RS18930 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS18955 SM00479 AL539_RS18955 AL539_RS18965 SM00382 ATPases associated with a variety of cellular activities AL539_RS19000 SM00422 helix_turn_helix, mercury resistance AL539_RS19040 SM00924 MgtE intracellular N domain AL539_RS19080 SM00953 AL539_RS19080 AL539_RS19095 SM00704 CDGSH-type zinc finger. Function unknown. AL539_RS19160 SM00260 Two component signalling adaptor domain AL539_RS19160 SM00448 cheY-homologous receiver domain AL539_RS19170 SM00421 helix_turn_helix, Lux Regulon AL539_RS19170 SM00448 cheY-homologous receiver domain AL539_RS19180 SM00267 diguanylate cyclase AL539_RS19185 SM00421 helix_turn_helix, Lux Regulon AL539_RS19185 SM00448 cheY-homologous receiver domain AL539_RS19190 SM00052 Putative diguanylate phosphodiesterase AL539_RS19190 SM00448 cheY-homologous receiver domain AL539_RS19195 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS19195 SM00387 Histidine kinase-like ATPases AL539_RS19195 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS19195 SM00448 cheY-homologous receiver domain AL539_RS19210 SM00387 Histidine kinase-like ATPases AL539_RS19210 SM00448 cheY-homologous receiver domain AL539_RS19245 SM00990 AL539_RS19245 AL539_RS19260 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL539_RS19285 SM00327 von Willebrand factor (vWF) type A domain AL539_RS19325 SM00862 Transcriptional regulatory protein, C terminal AL539_RS19340 SM00073 Histidine Phosphotransfer domain AL539_RS19340 SM00387 Histidine kinase-like ATPases AL539_RS19340 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS19340 SM00448 cheY-homologous receiver domain AL539_RS19350 SM00851 MGS-like domain AL539_RS19405 SM00422 helix_turn_helix, mercury resistance AL539_RS19410 SM00382 ATPases associated with a variety of cellular activities AL539_RS19450 SM00354 helix_turn _helix lactose operon repressor AL539_RS19470 SM00382 ATPases associated with a variety of cellular activities AL539_RS19480 SM00052 Putative diguanylate phosphodiesterase AL539_RS19480 SM00267 diguanylate cyclase AL539_RS19535 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL539_RS19545 SM00387 Histidine kinase-like ATPases AL539_RS19545 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS19545 SM00448 cheY-homologous receiver domain AL539_RS19560 SM00244 prohibitin homologues AL539_RS19575 SM00382 ATPases associated with a variety of cellular activities AL539_RS19605 SM00028 Tetratricopeptide repeats AL539_RS19605 SM00267 diguanylate cyclase AL539_RS19610 SM00822 AL539_RS19610 AL539_RS19645 SM00422 helix_turn_helix, mercury resistance AL539_RS19665 SM00878 Biotin carboxylase C-terminal domain AL539_RS19690 SM01266 AL539_RS19690 AL539_RS19695 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS19785 SM00382 ATPases associated with a variety of cellular activities AL539_RS19810 SM00382 ATPases associated with a variety of cellular activities AL539_RS19825 SM00893 Electron transfer flavoprotein domain AL539_RS19830 SM00893 Electron transfer flavoprotein domain AL539_RS19850 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS19850 SM00866 AL539_RS19850 AL539_RS19895 SM00822 AL539_RS19895 AL539_RS19905 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS19945 SM00240 Forkhead associated domain AL539_RS19965 SM00344 helix_turn_helix ASNC type AL539_RS20000 SM00220 Serine/Threonine protein kinases, catalytic domain AL539_RS20035 SM00382 ATPases associated with a variety of cellular activities AL539_RS20035 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_RS20040 SM00382 ATPases associated with a variety of cellular activities AL539_RS20105 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS20175 SM01240 AL539_RS20175 AL539_RS20190 SM00448 cheY-homologous receiver domain AL539_RS20225 SM00852 Probable molybdopterin binding domain AL539_RS20245 SM00450 Rhodanese Homology Domain AL539_RS20270 SM00861 Transketolase, pyrimidine binding domain AL539_RS20275 SM00091 PAS domain AL539_RS20275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS20310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS20345 SM00421 helix_turn_helix, Lux Regulon AL539_RS20345 SM00448 cheY-homologous receiver domain AL539_RS20350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS20350 SM00387 Histidine kinase-like ATPases AL539_RS20365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS20400 SM00822 AL539_RS20400 AL539_RS20450 SM00344 helix_turn_helix ASNC type AL539_RS20475 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS20480 SM00387 Histidine kinase-like ATPases AL539_RS20480 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS20480 SM00448 cheY-homologous receiver domain AL539_RS20495 SM00465 GIY-YIG type nucleases (URI domain) AL539_RS20520 SM00387 Histidine kinase-like ATPases AL539_RS20520 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS20520 SM00448 cheY-homologous receiver domain AL539_RS20525 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS20550 SM00344 helix_turn_helix ASNC type AL539_RS20565 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS20575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS20575 SM00387 Histidine kinase-like ATPases AL539_RS20575 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS20580 SM00448 cheY-homologous receiver domain AL539_RS20580 SM00862 Transcriptional regulatory protein, C terminal AL539_RS20600 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS20620 SM00924 MgtE intracellular N domain AL539_RS20635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_RS20640 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS20650 SM00563 Phosphate acyltransferases AL539_RS20695 SM00448 cheY-homologous receiver domain AL539_RS20695 SM00862 Transcriptional regulatory protein, C terminal AL539_RS20700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS20700 SM00387 Histidine kinase-like ATPases AL539_RS20700 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS20745 SM00357 Cold shock protein domain AL539_RS20775 SM00936 Penicillin-binding protein 5, C-terminal domain AL539_RS20795 SM00640 Glycosyl hydrolases family 32 AL539_RS20810 SM00354 helix_turn _helix lactose operon repressor AL539_RS20830 SM00822 AL539_RS20830 AL539_RS20870 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS20870 SM00871 Bacterial transcription activator, effector binding domain AL539_RS20905 SM00487 DEAD-like helicases superfamily AL539_RS20905 SM00490 helicase superfamily c-terminal domain AL539_RS20935 SM00829 Enoylreductase AL539_RS20950 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS20970 SM00344 helix_turn_helix ASNC type AL539_RS21005 SM00788 Adenylosuccinate synthetase AL539_RS21010 SM00870 AL539_RS21010 AL539_RS21030 SM00421 helix_turn_helix, Lux Regulon AL539_RS21065 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS21065 SM00866 AL539_RS21065 AL539_RS21090 SM00382 ATPases associated with a variety of cellular activities AL539_RS21140 SM00155 Phospholipase D. Active site motifs. AL539_RS21150 SM01022 AL539_RS21150 AL539_RS21155 SM00028 Tetratricopeptide repeats AL539_RS21165 SM00422 helix_turn_helix, mercury resistance AL539_RS21190 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL539_RS21200 SM00838 Elongation factor G C-terminus AL539_RS21200 SM00889 Elongation factor G, domain IV AL539_RS21240 SM00382 ATPases associated with a variety of cellular activities AL539_RS21315 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_RS21315 SM01134 AL539_RS21315 AL539_RS21345 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS21385 SM00883 Chaperonin 10 Kd subunit AL539_RS21390 SM00450 Rhodanese Homology Domain AL539_RS21405 SM01240 AL539_RS21405 AL539_RS21480 SM00858 AL539_RS21480 AL539_RS21545 SM00631 AL539_RS21545 AL539_RS21575 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS21575 SM00866 AL539_RS21575 AL539_RS21585 SM00382 ATPases associated with a variety of cellular activities AL539_RS21640 SM00382 ATPases associated with a variety of cellular activities AL539_RS21665 SM01057 Eukaryotic-type carbonic anhydrase AL539_RS21725 SM01266 AL539_RS21725 AL539_RS21760 SM00267 diguanylate cyclase AL539_RS21770 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS21775 SM00267 diguanylate cyclase AL539_RS21775 SM01079 AL539_RS21775 AL539_RS21865 SM00267 diguanylate cyclase AL539_RS21870 SM00382 ATPases associated with a variety of cellular activities AL539_RS21870 SM00448 cheY-homologous receiver domain AL539_RS21875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_RS21875 SM00387 Histidine kinase-like ATPases AL539_RS21930 SM00849 Metallo-beta-lactamase superfamily AL539_RS21970 SM00382 ATPases associated with a variety of cellular activities AL539_RS22040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS22040 SM00387 Histidine kinase-like ATPases AL539_RS22040 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS22045 SM00448 cheY-homologous receiver domain AL539_RS22045 SM00862 Transcriptional regulatory protein, C terminal AL539_RS22140 SM00382 ATPases associated with a variety of cellular activities AL539_RS22170 SM00014 Acid phosphatase homologues AL539_RS22190 SM00822 AL539_RS22190 AL539_RS22225 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS22320 SM00495 Chitin-binding domain type 3 AL539_RS22325 SM00344 helix_turn_helix ASNC type AL539_RS22350 SM00829 Enoylreductase AL539_RS22365 SM00267 diguanylate cyclase AL539_RS22385 SM00849 Metallo-beta-lactamase superfamily AL539_RS22405 SM00267 diguanylate cyclase AL539_RS22480 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS22480 SM01009 AlkA N-terminal domain AL539_RS22530 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_RS22535 SM00382 ATPases associated with a variety of cellular activities AL539_RS22565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS22565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS22565 SM01049 AL539_RS22565 AL539_RS22580 SM00448 cheY-homologous receiver domain AL539_RS22580 SM00850 LytTr DNA-binding domain AL539_RS22585 SM00387 Histidine kinase-like ATPases AL539_RS22605 SM00382 ATPases associated with a variety of cellular activities AL539_RS22630 SM00387 Histidine kinase-like ATPases AL539_RS22630 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS22630 SM00448 cheY-homologous receiver domain AL539_RS22650 SM00382 ATPases associated with a variety of cellular activities AL539_RS22655 SM00382 ATPases associated with a variety of cellular activities AL539_RS22675 SM00470 ParB-like nuclease domain AL539_RS22755 SM00382 ATPases associated with a variety of cellular activities AL539_RS22760 SM00052 Putative diguanylate phosphodiesterase AL539_RS22760 SM00267 diguanylate cyclase AL539_RS22775 SM00448 cheY-homologous receiver domain AL539_RS22780 SM00387 Histidine kinase-like ATPases AL539_RS22790 SM00421 helix_turn_helix, Lux Regulon AL539_RS22795 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS22820 SM00360 RNA recognition motif AL539_RS22840 SM00344 helix_turn_helix ASNC type AL539_RS22850 SM00382 ATPases associated with a variety of cellular activities AL539_RS22860 SM00487 DEAD-like helicases superfamily AL539_RS22860 SM00490 helicase superfamily c-terminal domain AL539_RS22870 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS22875 SM00829 Enoylreductase AL539_RS22930 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_RS22955 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS22955 SM00871 Bacterial transcription activator, effector binding domain AL539_RS22960 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS22985 SM00382 ATPases associated with a variety of cellular activities AL539_RS23055 SM00382 ATPases associated with a variety of cellular activities AL539_RS23060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS23060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS23095 SM00857 Resolvase, N terminal domain AL539_RS23100 SM00354 helix_turn _helix lactose operon repressor AL539_RS23135 SM00354 helix_turn _helix lactose operon repressor AL539_RS23190 SM00642 Alpha-amylase domain AL539_RS23210 SM00642 Alpha-amylase domain AL539_RS23220 SM00642 Alpha-amylase domain AL539_RS23225 SM00671 Sel1-like repeats. AL539_RS23230 SM00966 SpoVT / AbrB like domain AL539_RS23270 SM00421 helix_turn_helix, Lux Regulon AL539_RS23285 SM00642 Alpha-amylase domain AL539_RS23295 SM00642 Alpha-amylase domain AL539_RS23380 SM00226 Low molecular weight phosphatase family AL539_RS23410 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AL539_RS23425 SM00450 Rhodanese Homology Domain AL539_RS23435 SM00936 Penicillin-binding protein 5, C-terminal domain AL539_RS23440 SM00642 Alpha-amylase domain AL539_RS23445 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS23555 SM00448 cheY-homologous receiver domain AL539_RS23555 SM00862 Transcriptional regulatory protein, C terminal AL539_RS23560 SM00387 Histidine kinase-like ATPases AL539_RS23560 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS23715 SM00382 ATPases associated with a variety of cellular activities AL539_RS23740 SM00382 ATPases associated with a variety of cellular activities AL539_RS23750 SM00020 Trypsin-like serine protease AL539_RS23770 SM00481 DNA polymerase alpha chain like domain AL539_RS23815 SM00448 cheY-homologous receiver domain AL539_RS23815 SM00862 Transcriptional regulatory protein, C terminal AL539_RS23820 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS23835 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS23840 SM00052 Putative diguanylate phosphodiesterase AL539_RS23840 SM00267 diguanylate cyclase AL539_RS23850 SM00829 Enoylreductase AL539_RS23855 SM00972 Spore Coat Protein U domain AL539_RS23860 SM00972 Spore Coat Protein U domain AL539_RS23875 SM00972 Spore Coat Protein U domain AL539_RS23880 SM01057 Eukaryotic-type carbonic anhydrase AL539_RS23915 SM00382 ATPases associated with a variety of cellular activities AL539_RS23930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS23930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS23950 SM00587 ZnF_C4 abd HLH domain containing kinases domain AL539_RS23985 SM00382 ATPases associated with a variety of cellular activities AL539_RS24005 SM00267 diguanylate cyclase AL539_RS24010 SM00028 Tetratricopeptide repeats AL539_RS24030 SM00422 helix_turn_helix, mercury resistance AL539_RS24040 SM00257 Lysin motif AL539_RS24050 SM00487 DEAD-like helicases superfamily AL539_RS24050 SM00490 helicase superfamily c-terminal domain AL539_RS24080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS24080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS24100 SM00382 ATPases associated with a variety of cellular activities AL539_RS24105 SM00267 diguanylate cyclase AL539_RS24115 SM00327 von Willebrand factor (vWF) type A domain AL539_RS24120 SM00327 von Willebrand factor (vWF) type A domain AL539_RS24140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS24140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS24150 SM00421 helix_turn_helix, Lux Regulon AL539_RS24155 SM00421 helix_turn_helix, Lux Regulon AL539_RS24165 SM00382 ATPases associated with a variety of cellular activities AL539_RS24190 SM00382 ATPases associated with a variety of cellular activities AL539_RS24200 SM00382 ATPases associated with a variety of cellular activities AL539_RS24205 SM00387 Histidine kinase-like ATPases AL539_RS24205 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS24210 SM00448 cheY-homologous receiver domain AL539_RS24210 SM00862 Transcriptional regulatory protein, C terminal AL539_RS24275 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_RS24275 SM00382 ATPases associated with a variety of cellular activities AL539_RS24280 SM00849 Metallo-beta-lactamase superfamily AL539_RS24300 SM01060 AL539_RS24300 AL539_RS24310 SM00829 Enoylreductase AL539_RS24320 SM01022 AL539_RS24320 AL539_RS24380 SM00382 ATPases associated with a variety of cellular activities AL539_RS24415 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS24420 SM00382 ATPases associated with a variety of cellular activities AL539_RS24425 SM00382 ATPases associated with a variety of cellular activities AL539_RS24525 SM00382 ATPases associated with a variety of cellular activities AL539_RS24555 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_RS24575 SM00260 Two component signalling adaptor domain AL539_RS24575 SM00448 cheY-homologous receiver domain AL539_RS24590 SM00382 ATPases associated with a variety of cellular activities AL539_RS24595 SM00382 ATPases associated with a variety of cellular activities AL539_RS24610 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_RS24610 SM01134 AL539_RS24610 AL539_RS24625 SM01007 Class II Aldolase and Adducin N-terminal domain AL539_RS24660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS24660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS24695 SM00422 helix_turn_helix, mercury resistance AL539_RS24700 SM00642 Alpha-amylase domain AL539_RS24705 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_RS24730 SM00382 ATPases associated with a variety of cellular activities AL539_RS24775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_RS24775 SM00267 diguanylate cyclase AL539_RS24810 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS24825 SM00382 ATPases associated with a variety of cellular activities AL539_RS24845 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS24855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_RS24910 SM00530 Helix-turn-helix XRE-family like proteins AL539_RS24930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS24930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS24965 SM00052 Putative diguanylate phosphodiesterase AL539_RS24965 SM00267 diguanylate cyclase AL539_RS25025 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS25115 SM01322 AL539_RS25115 AL539_RS25120 SM00357 Cold shock protein domain AL539_RS25130 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS25130 SM00267 diguanylate cyclase AL539_RS25145 SM00382 ATPases associated with a variety of cellular activities AL539_RS25150 SM00382 ATPases associated with a variety of cellular activities AL539_RS25160 SM00448 cheY-homologous receiver domain AL539_RS25185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS25185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_RS25270 SM00857 Resolvase, N terminal domain AL539_RS25305 SM00487 DEAD-like helicases superfamily AL539_RS25465 SM00357 Cold shock protein domain AL539_RS25485 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25490 SM00487 DEAD-like helicases superfamily AL539_RS25490 SM00490 helicase superfamily c-terminal domain AL539_RS25510 SM00052 Putative diguanylate phosphodiesterase AL539_RS25515 SM00382 ATPases associated with a variety of cellular activities AL539_RS25520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS25545 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS25550 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_RS25550 SM00357 Cold shock protein domain AL539_RS25550 SM00955 AL539_RS25550 AL539_RS25555 SM00487 DEAD-like helicases superfamily AL539_RS25555 SM00490 helicase superfamily c-terminal domain AL539_RS25605 SM00342 helix_turn_helix, arabinose operon control protein AL539_RS25650 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25655 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25685 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_RS25685 SM00091 PAS domain AL539_RS25685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_RS25715 SM00422 helix_turn_helix, mercury resistance AL539_RS25750 SM00822 AL539_RS25750 AL539_RS25835 SM00382 ATPases associated with a variety of cellular activities AL539_RS25840 SM00062 Bacterial periplasmic substrate-binding proteins AL539_RS25840 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_RS25885 SM00893 Electron transfer flavoprotein domain AL539_RS25895 SM00861 Transketolase, pyrimidine binding domain AL539_RS25955 SM00448 cheY-homologous receiver domain AL539_RS25955 SM00862 Transcriptional regulatory protein, C terminal AL539_RS25960 SM00388 His Kinase A (phosphoacceptor) domain AL539_RS25965 SM00871 Bacterial transcription activator, effector binding domain AL539_RS25985 SM00028 Tetratricopeptide repeats AL539_RS25985 SM00267 diguanylate cyclase AL539_RS26005 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS26025 SM01012 AL539_RS26025 AL539_RS26055 SM00382 ATPases associated with a variety of cellular activities AL539_RS26090 SM00331 Sigma factor PP2C-like phosphatases AL539_RS26090 SM00448 cheY-homologous receiver domain AL539_RS26110 SM00220 Serine/Threonine protein kinases, catalytic domain AL539_RS26115 SM00240 Forkhead associated domain