locus-tag class description AL539_RS00015 PF12477 Sex factor F TraW protein N terminal AL539_RS00020 PF10502 Signal peptidase, peptidase S26 AL539_RS00035 PF13340 Putative transposase of IS4/5 family (DUF4096) AL539_RS00045 PF13098 Thioredoxin-like domain AL539_RS00045 PF10411 Disulfide bond isomerase protein N-terminus AL539_RS00075 PF00263 Bacterial type II and III secretion system protein AL539_RS00075 PF03958 Bacterial type II/III secretion system short domain AL539_RS00130 PF01131 DNA topoisomerase AL539_RS00130 PF01751 Toprim domain AL539_RS00140 PF13737 Transposase DDE domain AL539_RS00210 PF02652 L-lactate permease AL539_RS00215 PF02754 Cysteine-rich domain AL539_RS00220 PF02589 LUD domain AL539_RS00220 PF13183 4Fe-4S dicluster domain AL539_RS00220 PF11870 Domain of unknown function (DUF3390) AL539_RS00225 PF02589 LUD domain AL539_RS00230 PF03466 LysR substrate binding domain AL539_RS00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS00295 PF06613 KorB C-terminal beta-barrel domain AL539_RS00295 PF08535 KorB domain AL539_RS00295 PF02195 ParB-like nuclease domain AL539_RS00300 PF13614 AAA domain AL539_RS00310 PF18766 SWI2/SNF2 ATPase AL539_RS00310 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_RS00310 PF11867 Domain of unknown function (DUF3387) AL539_RS00325 PF12161 HsdM N-terminal domain AL539_RS00325 PF02384 N-6 DNA Methylase AL539_RS00340 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS00340 PF00589 Phage integrase family AL539_RS00425 PF05593 RHS Repeat AL539_RS00425 PF03527 RHS protein AL539_RS00435 PF05593 RHS Repeat AL539_RS00435 PF03527 RHS protein AL539_RS00495 PF00565 Staphylococcal nuclease homologue AL539_RS00515 PF01343 Peptidase family S49 AL539_RS00600 PF13693 Winged helix-turn-helix DNA-binding AL539_RS00615 PF06122 Conjugative relaxosome accessory transposon protein AL539_RS00665 PF01695 IstB-like ATP binding protein AL539_RS00670 PF13007 Transposase C of IS166 homeodomain AL539_RS00670 PF03050 Transposase IS66 family AL539_RS00670 PF13817 IS66 C-terminal element AL539_RS00670 PF13005 zinc-finger binding domain of transposase IS66 AL539_RS00720 PF09370 Phosphoenolpyruvate hydrolase-like AL539_RS00735 PF00717 Peptidase S24-like AL539_RS00740 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS00740 PF00589 Phage integrase family AL539_RS00755 PF02384 N-6 DNA Methylase AL539_RS00755 PF12161 HsdM N-terminal domain AL539_RS00760 PF01420 Type I restriction modification DNA specificity domain AL539_RS00770 PF01926 50S ribosome-binding GTPase AL539_RS00780 PF18766 SWI2/SNF2 ATPase AL539_RS00780 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_RS00780 PF11867 Domain of unknown function (DUF3387) AL539_RS00805 PF00436 Single-strand binding protein family AL539_RS00820 PF07728 AAA domain (dynein-related subfamily) AL539_RS00820 PF08406 CbbQ/NirQ/NorQ C-terminal AL539_RS00840 PF00092 von Willebrand factor type A domain AL539_RS00845 PF04002 RadC-like JAB domain AL539_RS00865 PF00483 Nucleotidyl transferase AL539_RS00875 PF03350 Uncharacterized protein family, UPF0114 AL539_RS00880 PF02371 Transposase IS116/IS110/IS902 family AL539_RS00880 PF01548 Transposase AL539_RS00885 PF00239 Resolvase, N terminal domain AL539_RS00885 PF02796 Helix-turn-helix domain of resolvase AL539_RS00895 PF01381 Helix-turn-helix AL539_RS00940 PF00589 Phage integrase family AL539_RS00940 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS01080 PF01206 Sulfurtransferase TusA AL539_RS01115 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS01175 PF07728 AAA domain (dynein-related subfamily) AL539_RS01175 PF08406 CbbQ/NirQ/NorQ C-terminal AL539_RS01205 PF13808 DDE_Tnp_1-associated AL539_RS01205 PF01609 Transposase DDE domain AL539_RS01230 PF06610 L-alanine exporter AL539_RS01240 PF02322 Cytochrome bd terminal oxidase subunit II AL539_RS01245 PF01654 Cytochrome bd terminal oxidase subunit I AL539_RS01260 PF00672 HAMP domain AL539_RS01260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS01260 PF17200 Single Cache domain 2 AL539_RS01265 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS01265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS01270 PF00873 AcrB/AcrD/AcrF family AL539_RS01285 PF00579 tRNA synthetases class I (W and Y) AL539_RS01295 PF03372 Endonuclease/Exonuclease/phosphatase family AL539_RS01305 PF00672 HAMP domain AL539_RS01305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS01315 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL539_RS01340 PF08401 Domain of unknown function (DUF1738) AL539_RS01340 PF18818 Metallopeptidase superfamily domain AL539_RS01340 PF13362 Toprim domain AL539_RS01410 PF02954 Bacterial regulatory protein, Fis family AL539_RS01425 PF04851 Type III restriction enzyme, res subunit AL539_RS01425 PF08774 VRR-NUC domain AL539_RS01430 PF18273 Type III R-M EcoP15I C-terminal domain AL539_RS01430 PF01555 DNA methylase AL539_RS01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS01455 PF03466 LysR substrate binding domain AL539_RS01465 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL539_RS01465 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL539_RS01470 PF01037 Lrp/AsnC ligand binding domain AL539_RS01475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL539_RS01475 PF01580 FtsK/SpoIIIE family AL539_RS01475 PF09397 Ftsk gamma domain AL539_RS01475 PF17854 FtsK alpha domain AL539_RS01480 PF03548 Outer membrane lipoprotein carrier protein LolA AL539_RS01485 PF16193 AAA C-terminal domain AL539_RS01485 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS01485 PF12002 MgsA AAA+ ATPase C terminal AL539_RS01490 PF02403 Seryl-tRNA synthetase N-terminal domain AL539_RS01490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL539_RS01505 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL539_RS01510 PF00202 Aminotransferase class-III AL539_RS01515 PF04055 Radical SAM superfamily AL539_RS01515 PF06968 Biotin and Thiamin Synthesis associated domain AL539_RS01520 PF00155 Aminotransferase class I and II AL539_RS01525 PF08241 Methyltransferase domain AL539_RS01540 PF01435 Peptidase family M48 AL539_RS01550 PF00106 short chain dehydrogenase AL539_RS01575 PF16036 Chalcone isomerase-like AL539_RS01585 PF08328 Adenylosuccinate lyase C-terminal AL539_RS01585 PF00206 Lyase AL539_RS01590 PF04356 Protein of unknown function (DUF489) AL539_RS01605 PF00294 pfkB family carbohydrate kinase AL539_RS01610 PF00816 H-NS histone family AL539_RS01615 PF03553 Na+/H+ antiporter family AL539_RS01620 PF01634 ATP phosphoribosyltransferase AL539_RS01620 PF08029 HisG, C-terminal domain AL539_RS01625 PF00815 Histidinol dehydrogenase AL539_RS01630 PF00155 Aminotransferase class I and II AL539_RS01635 PF00475 Imidazoleglycerol-phosphate dehydratase AL539_RS01635 PF08645 Polynucleotide kinase 3 phosphatase AL539_RS01640 PF00117 Glutamine amidotransferase class-I AL539_RS01645 PF00977 Histidine biosynthesis protein AL539_RS01650 PF00977 Histidine biosynthesis protein AL539_RS01655 PF01502 Phosphoribosyl-AMP cyclohydrolase AL539_RS01655 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL539_RS01660 PF02810 SEC-C motif AL539_RS01665 PF08668 HDOD domain AL539_RS01665 PF00563 EAL domain AL539_RS01670 PF00149 Calcineurin-like phosphoesterase AL539_RS01675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL539_RS01680 PF01406 tRNA synthetases class I (C) catalytic domain AL539_RS01680 PF09190 DALR domain AL539_RS01685 PF00265 Thymidine kinase AL539_RS01715 PF01226 Formate/nitrite transporter AL539_RS01725 PF03649 Uncharacterised protein family (UPF0014) AL539_RS01730 PF06796 Periplasmic nitrate reductase protein NapE AL539_RS01735 PF03264 NapC/NirT cytochrome c family, N-terminal region AL539_RS01740 PF01568 Molydopterin dinucleotide binding domain AL539_RS01740 PF18364 Molybdopterin oxidoreductase N-terminal domain AL539_RS01740 PF00384 Molybdopterin oxidoreductase AL539_RS01745 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL539_RS01745 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL539_RS01755 PF01368 DHH family AL539_RS01755 PF02833 DHHA2 domain AL539_RS01765 PF00005 ABC transporter AL539_RS01770 PF00005 ABC transporter AL539_RS01770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS01775 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_RS01775 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS01780 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS01785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS01790 PF00158 Sigma-54 interaction domain AL539_RS01790 PF02954 Bacterial regulatory protein, Fis family AL539_RS01795 PF04012 PspA/IM30 family AL539_RS01800 PF06667 Phage shock protein B AL539_RS01805 PF04024 PspC domain AL539_RS01815 PF13533 Biotin-lipoyl like AL539_RS01820 PF00873 AcrB/AcrD/AcrF family AL539_RS01825 PF03352 Methyladenine glycosylase AL539_RS01830 PF03280 Proteobacterial lipase chaperone protein AL539_RS01835 PF00561 alpha/beta hydrolase fold AL539_RS01840 PF01053 Cys/Met metabolism PLP-dependent enzyme AL539_RS01845 PF13396 Phospholipase_D-nuclease N-terminal AL539_RS01845 PF13091 PLD-like domain AL539_RS01850 PF00209 Sodium:neurotransmitter symporter family AL539_RS01855 PF00849 RNA pseudouridylate synthase AL539_RS01865 PF00970 Oxidoreductase FAD-binding domain AL539_RS01865 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS01865 PF00175 Oxidoreductase NAD-binding domain AL539_RS01870 PF03063 Prismane/CO dehydrogenase family AL539_RS01875 PF00158 Sigma-54 interaction domain AL539_RS01875 PF01590 GAF domain AL539_RS01890 PF01066 CDP-alcohol phosphatidyltransferase AL539_RS01895 PF00005 ABC transporter AL539_RS01900 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS01905 PF13416 Bacterial extracellular solute-binding protein AL539_RS01915 PF06945 Protein of unknown function (DUF1289) AL539_RS01930 PF02872 5'-nucleotidase, C-terminal domain AL539_RS01930 PF00149 Calcineurin-like phosphoesterase AL539_RS01940 PF01386 Ribosomal L25p family AL539_RS01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS01950 PF00072 Response regulator receiver domain AL539_RS01950 PF00486 Transcriptional regulatory protein, C terminal AL539_RS01960 PF04851 Type III restriction enzyme, res subunit AL539_RS01960 PF00271 Helicase conserved C-terminal domain AL539_RS01965 PF00849 RNA pseudouridylate synthase AL539_RS01965 PF01479 S4 domain AL539_RS01975 PF07690 Major Facilitator Superfamily AL539_RS01985 PF13460 NAD(P)H-binding AL539_RS01985 PF11066 Protein of unknown function (DUF2867) AL539_RS01990 PF01554 MatE AL539_RS01995 PF00005 ABC transporter AL539_RS02010 PF06965 Na+/H+ antiporter 1 AL539_RS02015 PF00440 Bacterial regulatory proteins, tetR family AL539_RS02015 PF16295 Tetracyclin repressor-like, C-terminal domain AL539_RS02020 PF09317 Domain of unknown function (DUF1974) AL539_RS02020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_RS02020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_RS02020 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_RS02025 PF07055 Enoyl reductase FAD binding domain AL539_RS02025 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL539_RS02025 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL539_RS02030 PF06826 Predicted Permease Membrane Region AL539_RS02030 PF02080 TrkA-C domain AL539_RS02035 PF00462 Glutaredoxin AL539_RS02040 PF00465 Iron-containing alcohol dehydrogenase AL539_RS02045 PF01418 Helix-turn-helix domain, rpiR family AL539_RS02045 PF01380 SIS domain AL539_RS02050 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL539_RS02060 PF03956 Lysine exporter LysO AL539_RS02080 PF04993 TfoX N-terminal domain AL539_RS02080 PF04994 TfoX C-terminal domain AL539_RS02095 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS02095 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS02105 PF00266 Aminotransferase class-V AL539_RS02110 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS02115 PF00664 ABC transporter transmembrane region AL539_RS02115 PF00005 ABC transporter AL539_RS02120 PF00664 ABC transporter transmembrane region AL539_RS02120 PF00005 ABC transporter AL539_RS02125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS02135 PF00266 Aminotransferase class-V AL539_RS02145 PF00072 Response regulator receiver domain AL539_RS02145 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS02150 PF00939 Sodium:sulfate symporter transmembrane region AL539_RS02155 PF02698 DUF218 domain AL539_RS02160 PF03949 Malic enzyme, NAD binding domain AL539_RS02160 PF00390 Malic enzyme, N-terminal domain AL539_RS02165 PF00270 DEAD/DEAH box helicase AL539_RS02165 PF11898 Domain of unknown function (DUF3418) AL539_RS02165 PF00271 Helicase conserved C-terminal domain AL539_RS02165 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL539_RS02165 PF04408 Helicase associated domain (HA2) AL539_RS02175 PF09423 PhoD-like phosphatase AL539_RS02175 PF16655 PhoD-like phosphatase, N-terminal domain AL539_RS02180 PF01259 SAICAR synthetase AL539_RS02200 PF00691 OmpA family AL539_RS02200 PF05736 OprF membrane domain AL539_RS02215 PF13183 4Fe-4S dicluster domain AL539_RS02215 PF01565 FAD binding domain AL539_RS02215 PF02913 FAD linked oxidases, C-terminal domain AL539_RS02220 PF04191 Phospholipid methyltransferase AL539_RS02230 PF00221 Aromatic amino acid lyase AL539_RS02235 PF17392 Urocanase C-terminal domain AL539_RS02235 PF01175 Urocanase Rossmann-like domain AL539_RS02235 PF17391 Urocanase N-terminal domain AL539_RS02240 PF00491 Arginase family AL539_RS02245 PF01979 Amidohydrolase family AL539_RS02250 PF07702 UTRA domain AL539_RS02250 PF00392 Bacterial regulatory proteins, gntR family AL539_RS02265 PF02824 TGS domain AL539_RS02265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL539_RS02265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL539_RS02265 PF03129 Anticodon binding domain AL539_RS02270 PF05198 Translation initiation factor IF-3, N-terminal domain AL539_RS02270 PF00707 Translation initiation factor IF-3, C-terminal domain AL539_RS02275 PF01632 Ribosomal protein L35 AL539_RS02280 PF00453 Ribosomal protein L20 AL539_RS02285 PF01906 Putative heavy-metal-binding AL539_RS02320 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL539_RS02320 PF01409 tRNA synthetases class II core domain (F) AL539_RS02325 PF03483 B3/4 domain AL539_RS02325 PF03484 tRNA synthetase B5 domain AL539_RS02325 PF03147 Ferredoxin-fold anticodon binding domain AL539_RS02325 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL539_RS02325 PF01588 Putative tRNA binding domain AL539_RS02335 PF00216 Bacterial DNA-binding protein AL539_RS02345 PF05724 Thiopurine S-methyltransferase (TPMT) AL539_RS02350 PF02222 ATP-grasp domain AL539_RS02355 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_RS02355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_RS02360 PF04172 LrgB-like family AL539_RS02365 PF03788 LrgA family AL539_RS02370 PF00929 Exonuclease AL539_RS02370 PF08411 Exonuclease C-terminal AL539_RS02375 PF00375 Sodium:dicarboxylate symporter family AL539_RS02380 PF13460 NAD(P)H-binding AL539_RS02385 PF02277 Phosphoribosyltransferase AL539_RS02390 PF02654 Cobalamin-5-phosphate synthase AL539_RS02395 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL539_RS02410 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL539_RS02415 PF01032 FecCD transport family AL539_RS02420 PF00005 ABC transporter AL539_RS02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS02440 PF03466 LysR substrate binding domain AL539_RS02450 PF01863 Protein of unknown function DUF45 AL539_RS02455 PF05971 RNA methyltransferase AL539_RS02475 PF00392 Bacterial regulatory proteins, gntR family AL539_RS02480 PF00171 Aldehyde dehydrogenase family AL539_RS02485 PF05544 Proline racemase AL539_RS02490 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL539_RS02490 PF01266 FAD dependent oxidoreductase AL539_RS02500 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL539_RS02505 PF00701 Dihydrodipicolinate synthetase family AL539_RS02510 PF00005 ABC transporter AL539_RS02510 PF08402 TOBE domain AL539_RS02515 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS02520 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS02530 PF01752 Collagenase AL539_RS02530 PF08453 Peptidase family M9 N-terminal AL539_RS02540 PF00005 ABC transporter AL539_RS02540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS02545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS02545 PF00005 ABC transporter AL539_RS02550 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS02550 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_RS02555 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS02560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS02565 PF07687 Peptidase dimerisation domain AL539_RS02565 PF01546 Peptidase family M20/M25/M40 AL539_RS02570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS02575 PF04209 homogentisate 1,2-dioxygenase AL539_RS02585 PF14497 Glutathione S-transferase, C-terminal domain AL539_RS02585 PF02798 Glutathione S-transferase, N-terminal domain AL539_RS02755 PF03553 Na+/H+ antiporter family AL539_RS02760 PF00120 Glutamine synthetase, catalytic domain AL539_RS02770 PF07722 Peptidase C26 AL539_RS02775 PF07883 Cupin domain AL539_RS02775 PF01381 Helix-turn-helix AL539_RS02780 PF00171 Aldehyde dehydrogenase family AL539_RS02785 PF01266 FAD dependent oxidoreductase AL539_RS02790 PF00795 Carbon-nitrogen hydrolase AL539_RS02795 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL539_RS02800 PF00171 Aldehyde dehydrogenase family AL539_RS02805 PF00202 Aminotransferase class-III AL539_RS02810 PF12792 CSS motif domain associated with EAL AL539_RS02810 PF00563 EAL domain AL539_RS02820 PF01047 MarR family AL539_RS02825 PF04237 YjbR AL539_RS02850 PF00072 Response regulator receiver domain AL539_RS02850 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS02850 PF01627 Hpt domain AL539_RS02850 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL539_RS02850 PF00672 HAMP domain AL539_RS02855 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS02855 PF00563 EAL domain AL539_RS02855 PF03707 Bacterial signalling protein N terminal repeat AL539_RS02870 PF04204 Homoserine O-succinyltransferase AL539_RS02880 PF00893 Small Multidrug Resistance protein AL539_RS02885 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_RS02890 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL539_RS02895 PF01810 LysE type translocator AL539_RS02905 PF01235 Sodium:alanine symporter family AL539_RS02930 PF00884 Sulfatase AL539_RS02935 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL539_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS02945 PF00005 ABC transporter AL539_RS02945 PF00571 CBS domain AL539_RS02960 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS02965 PF00583 Acetyltransferase (GNAT) family AL539_RS02970 PF00202 Aminotransferase class-III AL539_RS02975 PF06339 Ectoine synthase AL539_RS02980 PF00696 Amino acid kinase family AL539_RS02980 PF13840 ACT domain AL539_RS02985 PF00884 Sulfatase AL539_RS02995 PF03781 Sulfatase-modifying factor enzyme 1 AL539_RS03000 PF04055 Radical SAM superfamily AL539_RS03000 PF13186 Iron-sulfur cluster-binding domain AL539_RS03015 PF00884 Sulfatase AL539_RS03020 PF00884 Sulfatase AL539_RS03040 PF02321 Outer membrane efflux protein AL539_RS03055 PF08220 DeoR-like helix-turn-helix domain AL539_RS03055 PF00455 DeoR C terminal sensor domain AL539_RS03060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL539_RS03060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL539_RS03065 PF03928 Haem-degrading AL539_RS03070 PF00072 Response regulator receiver domain AL539_RS03070 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS03090 PF00939 Sodium:sulfate symporter transmembrane region AL539_RS03095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS03095 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS03100 PF00158 Sigma-54 interaction domain AL539_RS03100 PF02954 Bacterial regulatory protein, Fis family AL539_RS03100 PF00072 Response regulator receiver domain AL539_RS03105 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS03105 PF03707 Bacterial signalling protein N terminal repeat AL539_RS03105 PF00563 EAL domain AL539_RS03110 PF01966 HD domain AL539_RS03110 PF11871 Domain of unknown function (DUF3391) AL539_RS03115 PF01810 LysE type translocator AL539_RS03120 PF11230 Protein of unknown function (DUF3029) AL539_RS03125 PF04055 Radical SAM superfamily AL539_RS03135 PF03741 Integral membrane protein TerC family AL539_RS03145 PF01966 HD domain AL539_RS03150 PF00465 Iron-containing alcohol dehydrogenase AL539_RS03155 PF03222 Tryptophan/tyrosine permease family AL539_RS03160 PF00072 Response regulator receiver domain AL539_RS03160 PF01966 HD domain AL539_RS03170 PF00005 ABC transporter AL539_RS03175 PF01497 Periplasmic binding protein AL539_RS03180 PF01032 FecCD transport family AL539_RS03185 PF07715 TonB-dependent Receptor Plug Domain AL539_RS03185 PF00593 TonB dependent receptor AL539_RS03195 PF00664 ABC transporter transmembrane region AL539_RS03195 PF00005 ABC transporter AL539_RS03200 PF00005 ABC transporter AL539_RS03200 PF00664 ABC transporter transmembrane region AL539_RS03205 PF07963 Prokaryotic N-terminal methylation motif AL539_RS03205 PF08334 Type II secretion system (T2SS), protein G AL539_RS03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS03215 PF03466 LysR substrate binding domain AL539_RS03225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL539_RS03225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL539_RS03240 PF00012 Hsp70 protein AL539_RS03245 PF00012 Hsp70 protein AL539_RS03255 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS03290 PF02525 Flavodoxin-like fold AL539_RS03295 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL539_RS03295 PF00270 DEAD/DEAH box helicase AL539_RS03295 PF04408 Helicase associated domain (HA2) AL539_RS03295 PF00271 Helicase conserved C-terminal domain AL539_RS03295 PF11898 Domain of unknown function (DUF3418) AL539_RS03310 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS03320 PF02397 Bacterial sugar transferase AL539_RS03330 PF13439 Glycosyltransferase Family 4 AL539_RS03330 PF00534 Glycosyl transferases group 1 AL539_RS03360 PF13439 Glycosyltransferase Family 4 AL539_RS03360 PF00534 Glycosyl transferases group 1 AL539_RS03365 PF13439 Glycosyltransferase Family 4 AL539_RS03365 PF00534 Glycosyl transferases group 1 AL539_RS03370 PF02954 Bacterial regulatory protein, Fis family AL539_RS03370 PF00072 Response regulator receiver domain AL539_RS03370 PF00158 Sigma-54 interaction domain AL539_RS03385 PF02563 Polysaccharide biosynthesis/export protein AL539_RS03385 PF10531 SLBB domain AL539_RS03395 PF01740 STAS domain AL539_RS03400 PF14743 DNA ligase OB-like domain AL539_RS03400 PF01068 ATP dependent DNA ligase domain AL539_RS03410 PF01554 MatE AL539_RS03415 PF00677 Lumazine binding domain AL539_RS03425 PF03881 Fructosamine kinase AL539_RS03430 PF00072 Response regulator receiver domain AL539_RS03430 PF01339 CheB methylesterase AL539_RS03435 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS03435 PF05230 MASE2 domain AL539_RS03445 PF00877 NlpC/P60 family AL539_RS03480 PF03942 DTW domain AL539_RS03485 PF00480 ROK family AL539_RS03495 PF03453 MoeA N-terminal region (domain I and II) AL539_RS03495 PF00994 Probable molybdopterin binding domain AL539_RS03495 PF03454 MoeA C-terminal region (domain IV) AL539_RS03500 PF12804 MobA-like NTP transferase domain AL539_RS03505 PF08402 TOBE domain AL539_RS03505 PF00005 ABC transporter AL539_RS03510 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS03515 PF12849 PBP superfamily domain AL539_RS03520 PF00072 Response regulator receiver domain AL539_RS03520 PF00158 Sigma-54 interaction domain AL539_RS03520 PF02954 Bacterial regulatory protein, Fis family AL539_RS03525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS03525 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS03535 PF00005 ABC transporter AL539_RS03535 PF12848 ABC transporter AL539_RS03540 PF02634 FdhD/NarQ family AL539_RS03560 PF02613 Nitrate reductase delta subunit AL539_RS03570 PF01568 Molydopterin dinucleotide binding domain AL539_RS03570 PF00384 Molybdopterin oxidoreductase AL539_RS03570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS03575 PF13247 4Fe-4S dicluster domain AL539_RS03590 PF05593 RHS Repeat AL539_RS03590 PF03527 RHS protein AL539_RS03710 PF00909 Ammonium Transporter Family AL539_RS03715 PF02146 Sir2 family AL539_RS03720 PF13416 Bacterial extracellular solute-binding protein AL539_RS03725 PF13416 Bacterial extracellular solute-binding protein AL539_RS03730 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS03735 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS03740 PF08402 TOBE domain AL539_RS03740 PF00005 ABC transporter AL539_RS03760 PF01171 PP-loop family AL539_RS03765 PF00582 Universal stress protein family AL539_RS03770 PF13545 Crp-like helix-turn-helix domain AL539_RS03770 PF00027 Cyclic nucleotide-binding domain AL539_RS03785 PF00403 Heavy-metal-associated domain AL539_RS03795 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL539_RS03795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL539_RS03810 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL539_RS03825 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS03825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS03825 PF09308 LuxQ, periplasmic AL539_RS03825 PF00072 Response regulator receiver domain AL539_RS03855 PF17414 MatP C-terminal ribbon-helix-helix domain AL539_RS03855 PF06303 MatP N-terminal domain AL539_RS03860 PF13654 AAA domain AL539_RS03860 PF05362 Lon protease (S16) C-terminal proteolytic domain AL539_RS03865 PF07977 FabA-like domain AL539_RS03870 PF04957 Ribosome modulation factor AL539_RS03880 PF00005 ABC transporter AL539_RS03880 PF16326 ABC transporter C-terminal domain AL539_RS03880 PF12848 ABC transporter AL539_RS03890 PF10672 S-adenosylmethionine-dependent methyltransferase AL539_RS03890 PF01170 Putative RNA methylase family UPF0020 AL539_RS03890 PF02926 THUMP domain AL539_RS03895 PF07126 Cell-division protein ZapC AL539_RS03900 PF01180 Dihydroorotate dehydrogenase AL539_RS03905 PF05088 Bacterial NAD-glutamate dehydrogenase AL539_RS03915 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL539_RS03915 PF01433 Peptidase family M1 domain AL539_RS03915 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL539_RS03925 PF00595 PDZ domain AL539_RS03925 PF03572 Peptidase family S41 AL539_RS03925 PF17804 Tail specific protease N-terminal domain AL539_RS03925 PF11818 C-terminal domain of tail specific protease (DUF3340) AL539_RS03930 PF17516 ProQ C-terminal domain AL539_RS03930 PF04352 ProQ/FINO family AL539_RS03935 PF13185 GAF domain AL539_RS03940 PF00664 ABC transporter transmembrane region AL539_RS03940 PF00005 ABC transporter AL539_RS03945 PF04403 Paraquat-inducible protein A AL539_RS03950 PF02470 MlaD protein AL539_RS03955 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL539_RS03955 PF01189 16S rRNA methyltransferase RsmB/F AL539_RS03955 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL539_RS03975 PF00793 DAHP synthetase I family AL539_RS03980 PF04461 Protein of unknown function (DUF520) AL539_RS03985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_RS03985 PF14824 Sirohaem biosynthesis protein central AL539_RS03985 PF10414 Sirohaem synthase dimerisation region AL539_RS03995 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS04000 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS04005 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS04010 PF00005 ABC transporter AL539_RS04015 PF01027 Inhibitor of apoptosis-promoting Bax1 AL539_RS04025 PF04358 DsrC like protein AL539_RS04030 PF00708 Acylphosphatase AL539_RS04035 PF02743 Cache domain AL539_RS04035 PF00672 HAMP domain AL539_RS04035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS04040 PF10672 S-adenosylmethionine-dependent methyltransferase AL539_RS04040 PF17785 PUA-like domain AL539_RS04055 PF00691 OmpA family AL539_RS04095 PF00691 OmpA family AL539_RS04095 PF05736 OprF membrane domain AL539_RS04105 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS04110 PF09339 IclR helix-turn-helix domain AL539_RS04110 PF01614 Bacterial transcriptional regulator AL539_RS04120 PF00248 Aldo/keto reductase family AL539_RS04125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS04125 PF03466 LysR substrate binding domain AL539_RS04135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS04135 PF03466 LysR substrate binding domain AL539_RS04140 PF07690 Major Facilitator Superfamily AL539_RS04150 PF08659 KR domain AL539_RS04150 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_RS04150 PF00698 Acyl transferase domain AL539_RS04150 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS04150 PF16197 Ketoacyl-synthetase C-terminal extension AL539_RS04150 PF14765 Polyketide synthase dehydratase AL539_RS04150 PF00550 Phosphopantetheine attachment site AL539_RS04150 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_RS04150 PF00107 Zinc-binding dehydrogenase AL539_RS04155 PF12833 Helix-turn-helix domain AL539_RS04155 PF02311 AraC-like ligand binding domain AL539_RS04160 PF00857 Isochorismatase family AL539_RS04165 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS04175 PF00107 Zinc-binding dehydrogenase AL539_RS04175 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS04180 PF02310 B12 binding domain AL539_RS04180 PF02607 B12 binding domain AL539_RS04180 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL539_RS04180 PF00809 Pterin binding enzyme AL539_RS04180 PF02574 Homocysteine S-methyltransferase AL539_RS04185 PF00005 ABC transporter AL539_RS04190 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS04195 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS04205 PF00267 Gram-negative porin AL539_RS04210 PF03466 LysR substrate binding domain AL539_RS04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS04220 PF00873 AcrB/AcrD/AcrF family AL539_RS04225 PF03466 LysR substrate binding domain AL539_RS04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS04235 PF03466 LysR substrate binding domain AL539_RS04240 PF01810 LysE type translocator AL539_RS04250 PF06508 Queuosine biosynthesis protein QueC AL539_RS04255 PF04055 Radical SAM superfamily AL539_RS04270 PF00089 Trypsin AL539_RS04280 PF16177 Acetyl-coenzyme A synthetase N-terminus AL539_RS04280 PF00501 AMP-binding enzyme AL539_RS04280 PF13193 AMP-binding enzyme C-terminal domain AL539_RS04285 PF04303 PrpF protein AL539_RS04290 PF00330 Aconitase family (aconitate hydratase) AL539_RS04290 PF00694 Aconitase C-terminal domain AL539_RS04295 PF00285 Citrate synthase, C-terminal domain AL539_RS04325 PF01970 Tripartite tricarboxylate transporter TctA family AL539_RS04335 PF01925 Sulfite exporter TauE/SafE AL539_RS04350 PF05844 YopD protein AL539_RS04360 PF07720 Tetratricopeptide repeat AL539_RS04365 PF04792 V antigen (LcrV) protein AL539_RS04375 PF09621 Type III secretion system regulator (LcrR) AL539_RS04380 PF00771 FHIPEP family AL539_RS04400 PF09059 TyeA AL539_RS04410 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL539_RS04410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_RS04410 PF18269 T3SS EscN ATPase C-terminal domain AL539_RS04425 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_RS04430 PF00813 FliP family AL539_RS04435 PF01313 Bacterial export proteins, family 3 AL539_RS04440 PF01311 Bacterial export proteins, family 1 AL539_RS04445 PF01312 FlhB HrpN YscU SpaS Family AL539_RS04450 PF12833 Helix-turn-helix domain AL539_RS04450 PF12852 Cupin AL539_RS04480 PF02661 Fic/DOC family AL539_RS04490 PF02108 Flagellar assembly protein FliH AL539_RS04500 PF01514 Secretory protein of YscJ/FliF family AL539_RS04505 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL539_RS04515 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AL539_RS04520 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL539_RS04530 PF16697 Inner membrane component of T3SS, cytoplasmic domain AL539_RS04530 PF16693 Inner membrane component of T3SS, periplasmic domain AL539_RS04535 PF03958 Bacterial type II/III secretion system short domain AL539_RS04535 PF00263 Bacterial type II and III secretion system protein AL539_RS04550 PF12833 Helix-turn-helix domain AL539_RS04570 PF00171 Aldehyde dehydrogenase family AL539_RS04575 PF01590 GAF domain AL539_RS04575 PF02954 Bacterial regulatory protein, Fis family AL539_RS04575 PF00158 Sigma-54 interaction domain AL539_RS04590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL539_RS04590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_RS04595 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL539_RS04600 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL539_RS04600 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL539_RS04605 PF02311 AraC-like ligand binding domain AL539_RS04605 PF12833 Helix-turn-helix domain AL539_RS04610 PF00593 TonB dependent receptor AL539_RS04610 PF07715 TonB-dependent Receptor Plug Domain AL539_RS04615 PF00072 Response regulator receiver domain AL539_RS04615 PF12431 Transcriptional regulator AL539_RS04620 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL539_RS04620 PF17203 Single cache domain 3 AL539_RS04620 PF00989 PAS fold AL539_RS04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS04635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS04650 PF03466 LysR substrate binding domain AL539_RS04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS04665 PF08543 Phosphomethylpyrimidine kinase AL539_RS04670 PF00155 Aminotransferase class I and II AL539_RS04675 PF06826 Predicted Permease Membrane Region AL539_RS04675 PF02080 TrkA-C domain AL539_RS04685 PF13533 Biotin-lipoyl like AL539_RS04705 PF13091 PLD-like domain AL539_RS04715 PF11008 Protein of unknown function (DUF2846) AL539_RS04720 PF01810 LysE type translocator AL539_RS04725 PF01810 LysE type translocator AL539_RS04730 PF07237 Protein of unknown function (DUF1428) AL539_RS04750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL539_RS04750 PF01411 tRNA synthetases class II (A) AL539_RS04750 PF02272 DHHA1 domain AL539_RS04755 PF13302 Acetyltransferase (GNAT) domain AL539_RS04760 PF12464 Maltose acetyltransferase AL539_RS04760 PF14602 Hexapeptide repeat of succinyl-transferase AL539_RS04870 PF08274 PhnA Zinc-Ribbon AL539_RS04870 PF03831 PhnA domain AL539_RS04965 PF00665 Integrase core domain AL539_RS04965 PF13276 HTH-like domain AL539_RS04965 PF13333 Integrase core domain AL539_RS04980 PF00293 NUDIX domain AL539_RS04980 PF13344 Haloacid dehalogenase-like hydrolase AL539_RS05250 PF13737 Transposase DDE domain AL539_RS05410 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL539_RS05445 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL539_RS05455 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL539_RS05540 PF13495 Phage integrase, N-terminal SAM-like domain AL539_RS05540 PF00589 Phage integrase family AL539_RS05555 PF13302 Acetyltransferase (GNAT) domain AL539_RS05560 PF18024 Helix-turn-helix domain AL539_RS05560 PF00158 Sigma-54 interaction domain AL539_RS05565 PF05128 Domain of unknown function (DUF697) AL539_RS05570 PF04317 YcjX-like family, DUF463 AL539_RS05590 PF00425 chorismate binding enzyme AL539_RS05590 PF04715 Anthranilate synthase component I, N terminal region AL539_RS05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS05595 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS05595 PF09308 LuxQ, periplasmic AL539_RS05595 PF00072 Response regulator receiver domain AL539_RS05605 PF00293 NUDIX domain AL539_RS05610 PF03222 Tryptophan/tyrosine permease family AL539_RS05615 PF03315 Serine dehydratase beta chain AL539_RS05615 PF03313 Serine dehydratase alpha chain AL539_RS05620 PF04940 Sensors of blue-light using FAD AL539_RS05620 PF00563 EAL domain AL539_RS05630 PF01242 6-pyruvoyl tetrahydropterin synthase AL539_RS05635 PF17200 Single Cache domain 2 AL539_RS05635 PF00672 HAMP domain AL539_RS05635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS05640 PF01336 OB-fold nucleic acid binding domain AL539_RS05640 PF00152 tRNA synthetases class II (D, K and N) AL539_RS05650 PF00155 Aminotransferase class I and II AL539_RS05650 PF00392 Bacterial regulatory proteins, gntR family AL539_RS05665 PF00155 Aminotransferase class I and II AL539_RS05685 PF00672 HAMP domain AL539_RS05685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS05690 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS05700 PF00196 Bacterial regulatory proteins, luxR family AL539_RS05700 PF00072 Response regulator receiver domain AL539_RS05705 PF07730 Histidine kinase AL539_RS05705 PF17200 Single Cache domain 2 AL539_RS05710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL539_RS05720 PF03480 Bacterial extracellular solute-binding protein, family 7 AL539_RS05735 PF00753 Metallo-beta-lactamase superfamily AL539_RS05740 PF05951 Bacterial protein of unknown function (DUF882) AL539_RS05745 PF01471 Putative peptidoglycan binding domain AL539_RS05745 PF03734 L,D-transpeptidase catalytic domain AL539_RS05770 PF00925 GTP cyclohydrolase II AL539_RS05780 PF03918 Cytochrome C biogenesis protein AL539_RS05785 PF08534 Redoxin AL539_RS05790 PF01578 Cytochrome C assembly protein AL539_RS05790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL539_RS05795 PF03916 Polysulphide reductase, NrfD AL539_RS05800 PF13247 4Fe-4S dicluster domain AL539_RS05810 PF02335 Cytochrome c552 AL539_RS05825 PF03989 DNA gyrase C-terminal domain, beta-propeller AL539_RS05825 PF00521 DNA gyrase/topoisomerase IV, subunit A AL539_RS05840 PF00317 Ribonucleotide reductase, all-alpha domain AL539_RS05840 PF03477 ATP cone domain AL539_RS05840 PF02867 Ribonucleotide reductase, barrel domain AL539_RS05845 PF00268 Ribonucleotide reductase, small chain AL539_RS05855 PF00994 Probable molybdopterin binding domain AL539_RS05870 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL539_RS05875 PF03435 Saccharopine dehydrogenase NADP binding domain AL539_RS05875 PF16653 Saccharopine dehydrogenase C-terminal domain AL539_RS05880 PF00202 Aminotransferase class-III AL539_RS05905 PF01066 CDP-alcohol phosphatidyltransferase AL539_RS05910 PF08459 UvrC Helix-hairpin-helix N-terminal AL539_RS05910 PF02151 UvrB/uvrC motif AL539_RS05910 PF01541 GIY-YIG catalytic domain AL539_RS05915 PF00196 Bacterial regulatory proteins, luxR family AL539_RS05915 PF00072 Response regulator receiver domain AL539_RS05920 PF03104 DNA polymerase family B, exonuclease domain AL539_RS05920 PF00136 DNA polymerase family B AL539_RS05930 PF01132 Elongation factor P (EF-P) OB domain AL539_RS05930 PF08207 Elongation factor P (EF-P) KOW-like domain AL539_RS05930 PF09285 Elongation factor P, C-terminal AL539_RS05935 PF04269 Protein of unknown function, DUF440 AL539_RS05940 PF00849 RNA pseudouridylate synthase AL539_RS05940 PF01479 S4 domain AL539_RS05950 PF01300 Telomere recombination AL539_RS05955 PF02811 PHP domain AL539_RS05960 PF08056 Tryptophan operon leader peptide AL539_RS05965 PF00425 chorismate binding enzyme AL539_RS05965 PF04715 Anthranilate synthase component I, N terminal region AL539_RS05970 PF00117 Glutamine amidotransferase class-I AL539_RS05975 PF02885 Glycosyl transferase family, helical bundle domain AL539_RS05975 PF00591 Glycosyl transferase family, a/b domain AL539_RS05980 PF00218 Indole-3-glycerol phosphate synthase AL539_RS05980 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL539_RS05985 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS05990 PF00290 Tryptophan synthase alpha chain AL539_RS05995 PF13545 Crp-like helix-turn-helix domain AL539_RS05995 PF00027 Cyclic nucleotide-binding domain AL539_RS06000 PF00501 AMP-binding enzyme AL539_RS06000 PF13193 AMP-binding enzyme C-terminal domain AL539_RS06010 PF00375 Sodium:dicarboxylate symporter family AL539_RS06015 PF17327 Acyl homoserine lactone synthase AL539_RS06020 PF00072 Response regulator receiver domain AL539_RS06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS06030 PF04279 Intracellular septation protein A AL539_RS06035 PF03061 Thioesterase superfamily AL539_RS06040 PF03795 YCII-related domain AL539_RS06050 PF01717 Cobalamin-independent synthase, Catalytic domain AL539_RS06050 PF08267 Cobalamin-independent synthase, N-terminal domain AL539_RS06055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS06055 PF03466 LysR substrate binding domain AL539_RS06070 PF08448 PAS fold AL539_RS06070 PF00563 EAL domain AL539_RS06070 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS06070 PF08447 PAS fold AL539_RS06075 PF11842 Domain of unknown function (DUF3362) AL539_RS06075 PF08497 Radical SAM N-terminal AL539_RS06075 PF04055 Radical SAM superfamily AL539_RS06100 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL539_RS06105 PF00535 Glycosyl transferase family 2 AL539_RS06110 PF00072 Response regulator receiver domain AL539_RS06110 PF00486 Transcriptional regulatory protein, C terminal AL539_RS06115 PF00672 HAMP domain AL539_RS06115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS06115 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS06130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS06130 PF03466 LysR substrate binding domain AL539_RS06135 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS06135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS06145 PF08267 Cobalamin-independent synthase, N-terminal domain AL539_RS06145 PF01717 Cobalamin-independent synthase, Catalytic domain AL539_RS06165 PF12704 MacB-like periplasmic core domain AL539_RS06165 PF02687 FtsX-like permease family AL539_RS06165 PF00005 ABC transporter AL539_RS06170 PF00005 ABC transporter AL539_RS06170 PF12704 MacB-like periplasmic core domain AL539_RS06170 PF02687 FtsX-like permease family AL539_RS06175 PF12704 MacB-like periplasmic core domain AL539_RS06175 PF02687 FtsX-like permease family AL539_RS06175 PF00005 ABC transporter AL539_RS06185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS06205 PF00085 Thioredoxin AL539_RS06210 PF02683 Cytochrome C biogenesis protein transmembrane region AL539_RS06210 PF11412 Disulphide bond corrector protein DsbC AL539_RS06220 PF00196 Bacterial regulatory proteins, luxR family AL539_RS06220 PF00072 Response regulator receiver domain AL539_RS06225 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS06230 PF13247 4Fe-4S dicluster domain AL539_RS06235 PF03916 Polysulphide reductase, NrfD AL539_RS06240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS06240 PF01568 Molydopterin dinucleotide binding domain AL539_RS06240 PF00384 Molybdopterin oxidoreductase AL539_RS06245 PF00034 Cytochrome c AL539_RS06250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL539_RS06255 PF04403 Paraquat-inducible protein A AL539_RS06260 PF02470 MlaD protein AL539_RS06280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS06285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL539_RS06290 PF18073 Rubredoxin metal binding domain AL539_RS06295 PF06305 Lipopolysaccharide assembly protein A domain AL539_RS06300 PF00216 Bacterial DNA-binding protein AL539_RS06305 PF00575 S1 RNA binding domain AL539_RS06310 PF02224 Cytidylate kinase AL539_RS06315 PF08496 Peptidase family S49 N-terminal AL539_RS06315 PF01343 Peptidase family S49 AL539_RS06320 PF00106 short chain dehydrogenase AL539_RS06335 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL539_RS06335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL539_RS06335 PF14579 Helix-hairpin-helix motif AL539_RS06335 PF02811 PHP domain AL539_RS06335 PF01336 OB-fold nucleic acid binding domain AL539_RS06340 PF00072 Response regulator receiver domain AL539_RS06340 PF01584 CheW-like domain AL539_RS06345 PF00480 ROK family AL539_RS06350 PF02887 Pyruvate kinase, alpha/beta domain AL539_RS06350 PF00224 Pyruvate kinase, barrel domain AL539_RS06355 PF01734 Patatin-like phospholipase AL539_RS06370 PF00209 Sodium:neurotransmitter symporter family AL539_RS06385 PF00367 phosphotransferase system, EIIB AL539_RS06385 PF02378 Phosphotransferase system, EIIC AL539_RS06390 PF01026 TatD related DNase AL539_RS06395 PF09115 DNA polymerase III, delta subunit, C terminal AL539_RS06400 PF02223 Thymidylate kinase AL539_RS06405 PF02618 YceG-like family AL539_RS06410 PF01063 Amino-transferase class IV AL539_RS06415 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_RS06415 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_RS06420 PF00550 Phosphopantetheine attachment site AL539_RS06430 PF00698 Acyl transferase domain AL539_RS06435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL539_RS06435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL539_RS06440 PF02504 Fatty acid synthesis protein AL539_RS06445 PF01783 Ribosomal L32p protein family AL539_RS06450 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL539_RS06455 PF02545 Maf-like protein AL539_RS06460 PF01479 S4 domain AL539_RS06460 PF00849 RNA pseudouridylate synthase AL539_RS06470 PF12111 Polyribonucleotide phosphorylase C terminal AL539_RS06470 PF10150 Ribonuclease E/G family AL539_RS06470 PF00575 S1 RNA binding domain AL539_RS06480 PF01740 STAS domain AL539_RS06480 PF00916 Sulfate permease family AL539_RS06485 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL539_RS06490 PF12557 Cob(I)alamin adenosyltransferase N terminal AL539_RS06490 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL539_RS06500 PF00485 Phosphoribulokinase / Uridine kinase family AL539_RS06505 PF10609 NUBPL iron-transfer P-loop NTPase AL539_RS06510 PF01588 Putative tRNA binding domain AL539_RS06510 PF09334 tRNA synthetases class I (M) AL539_RS06535 PF00392 Bacterial regulatory proteins, gntR family AL539_RS06535 PF07840 FadR C-terminal domain AL539_RS06540 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL539_RS06545 PF02600 Disulfide bond formation protein DsbB AL539_RS06550 PF02810 SEC-C motif AL539_RS06550 PF03695 Uncharacterised protein family (UPF0149) AL539_RS06555 PF01207 Dihydrouridine synthase (Dus) AL539_RS06560 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS06560 PF17158 Membrane-associated sensor, integral membrane domain AL539_RS06565 PF02903 Alpha amylase, N-terminal ig-like domain AL539_RS06565 PF00128 Alpha amylase, catalytic domain AL539_RS06570 PF00005 ABC transporter AL539_RS06575 PF02653 Branched-chain amino acid transport system / permease component AL539_RS06585 PF04217 Protein of unknown function, DUF412 AL539_RS06590 PF00871 Acetokinase family AL539_RS06595 PF07085 DRTGG domain AL539_RS06595 PF01515 Phosphate acetyl/butaryl transferase AL539_RS06605 PF13409 Glutathione S-transferase, N-terminal domain AL539_RS06610 PF00005 ABC transporter AL539_RS06610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS06615 PF00005 ABC transporter AL539_RS06615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS06620 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS06620 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_RS06625 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS06630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS06640 PF02391 MoaE protein AL539_RS06645 PF02597 ThiS family AL539_RS06650 PF01967 MoaC family AL539_RS06655 PF00994 Probable molybdopterin binding domain AL539_RS06660 PF06463 Molybdenum Cofactor Synthesis C AL539_RS06660 PF04055 Radical SAM superfamily AL539_RS06665 PF01933 Uncharacterised protein family UPF0052 AL539_RS06670 PF01627 Hpt domain AL539_RS06675 PF00072 Response regulator receiver domain AL539_RS06675 PF02954 Bacterial regulatory protein, Fis family AL539_RS06675 PF00158 Sigma-54 interaction domain AL539_RS06680 PF17757 UvrB interaction domain AL539_RS06680 PF12344 Ultra-violet resistance protein B AL539_RS06680 PF02151 UvrB/uvrC motif AL539_RS06680 PF04851 Type III restriction enzyme, res subunit AL539_RS06680 PF00271 Helicase conserved C-terminal domain AL539_RS06690 PF01228 Glycine radical AL539_RS06690 PF02901 Pyruvate formate lyase-like AL539_RS06695 PF02508 Rnf-Nqr subunit, membrane protein AL539_RS06700 PF04060 Putative Fe-S cluster AL539_RS06705 PF13375 RnfC Barrel sandwich hybrid domain AL539_RS06705 PF12838 4Fe-4S dicluster domain AL539_RS06705 PF10531 SLBB domain AL539_RS06705 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL539_RS06710 PF03116 NQR2, RnfD, RnfE family AL539_RS06715 PF04205 FMN-binding domain AL539_RS06720 PF02508 Rnf-Nqr subunit, membrane protein AL539_RS06725 PF00730 HhH-GPD superfamily base excision DNA repair protein AL539_RS06725 PF00633 Helix-hairpin-helix motif AL539_RS06725 PF10576 Iron-sulfur binding domain of endonuclease III AL539_RS06730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS06735 PF10952 Protein of unknown function (DUF2753) AL539_RS06740 PF18393 MotY N-terminal domain AL539_RS06740 PF00691 OmpA family AL539_RS06750 PF00929 Exonuclease AL539_RS06755 PF03553 Na+/H+ antiporter family AL539_RS06755 PF13726 Na+-H+ antiporter family AL539_RS06775 PF00462 Glutaredoxin AL539_RS06780 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL539_RS06780 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL539_RS06795 PF00171 Aldehyde dehydrogenase family AL539_RS06795 PF00465 Iron-containing alcohol dehydrogenase AL539_RS06800 PF01914 MarC family integral membrane protein AL539_RS06805 PF00520 Ion transport protein AL539_RS06805 PF00027 Cyclic nucleotide-binding domain AL539_RS06810 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL539_RS06810 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL539_RS06815 PF03553 Na+/H+ antiporter family AL539_RS06830 PF04245 37-kD nucleoid-associated bacterial protein AL539_RS06835 PF07208 Protein of unknown function (DUF1414) AL539_RS06840 PF00884 Sulfatase AL539_RS06840 PF11893 Domain of unknown function (DUF3413) AL539_RS06850 PF00850 Histone deacetylase domain AL539_RS06855 PF00106 short chain dehydrogenase AL539_RS06865 PF01131 DNA topoisomerase AL539_RS06865 PF01751 Toprim domain AL539_RS06870 PF00881 Nitroreductase family AL539_RS06880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_RS06880 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS06885 PF01343 Peptidase family S49 AL539_RS06890 PF17763 Glutaminase/Asparaginase C-terminal domain AL539_RS06890 PF00710 Asparaginase, N-terminal AL539_RS06895 PF07023 Protein of unknown function (DUF1315) AL539_RS06905 PF01641 SelR domain AL539_RS06910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS06910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_RS06915 PF01263 Aldose 1-epimerase AL539_RS06920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS06920 PF08447 PAS fold AL539_RS06920 PF13426 PAS domain AL539_RS06925 PF13847 Methyltransferase domain AL539_RS06945 PF00245 Alkaline phosphatase AL539_RS06955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS06960 PF03992 Antibiotic biosynthesis monooxygenase AL539_RS06965 PF05552 Conserved TM helix AL539_RS06965 PF00924 Mechanosensitive ion channel AL539_RS06970 PF03692 Putative zinc- or iron-chelating domain AL539_RS06975 PF04226 Transglycosylase associated protein AL539_RS06980 PF03692 Putative zinc- or iron-chelating domain AL539_RS06985 PF00230 Major intrinsic protein AL539_RS06990 PF02132 RecR protein AL539_RS06990 PF13662 Toprim domain AL539_RS06995 PF02575 YbaB/EbfC DNA-binding family AL539_RS07000 PF12169 DNA polymerase III subunits gamma and tau domain III AL539_RS07000 PF12170 DNA polymerase III tau subunit V interacting with alpha AL539_RS07000 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL539_RS07005 PF00156 Phosphoribosyl transferase domain AL539_RS07010 PF04304 Protein of unknown function (DUF454) AL539_RS07020 PF00072 Response regulator receiver domain AL539_RS07025 PF03466 LysR substrate binding domain AL539_RS07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS07030 PF00156 Phosphoribosyl transferase domain AL539_RS07035 PF02674 Colicin V production protein AL539_RS07040 PF05036 Sporulation related domain AL539_RS07045 PF02875 Mur ligase family, glutamate ligase domain AL539_RS07045 PF08245 Mur ligase middle domain AL539_RS07050 PF01039 Carboxyl transferase domain AL539_RS07050 PF17848 Acetyl-coA carboxylase zinc finger domain AL539_RS07060 PF01416 tRNA pseudouridine synthase AL539_RS07070 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL539_RS07070 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL539_RS07075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_RS07075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_RS07075 PF11890 Domain of unknown function (DUF3410) AL539_RS07085 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_RS07085 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_RS07090 PF01266 FAD dependent oxidoreductase AL539_RS07090 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL539_RS07095 PF03358 NADPH-dependent FMN reductase AL539_RS07105 PF08891 YfcL protein AL539_RS07110 PF04315 Elongation factor P hydroxylase AL539_RS07120 PF03458 UPF0126 domain AL539_RS07125 PF01264 Chorismate synthase AL539_RS07130 PF05175 Methyltransferase small domain AL539_RS07135 PF01713 Smr domain AL539_RS07140 PF00300 Histidine phosphatase superfamily (branch 1) AL539_RS07145 PF05193 Peptidase M16 inactive domain AL539_RS07145 PF16187 Middle or third domain of peptidase_M16 AL539_RS07145 PF00675 Insulinase (Peptidase family M16) AL539_RS07155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL539_RS07155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL539_RS07155 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS07160 PF02803 Thiolase, C-terminal domain AL539_RS07160 PF00108 Thiolase, N-terminal domain AL539_RS07170 PF04542 Sigma-70 region 2 AL539_RS07170 PF08281 Sigma-70, region 4 AL539_RS07180 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_RS07185 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_RS07215 PF09370 Phosphoenolpyruvate hydrolase-like AL539_RS07230 PF04333 MlaA lipoprotein AL539_RS07235 PF03918 Cytochrome C biogenesis protein AL539_RS07240 PF03918 Cytochrome C biogenesis protein AL539_RS07245 PF08534 Redoxin AL539_RS07250 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL539_RS07250 PF01578 Cytochrome C assembly protein AL539_RS07255 PF03100 CcmE AL539_RS07260 PF04995 Heme exporter protein D (CcmD) AL539_RS07265 PF01578 Cytochrome C assembly protein AL539_RS07270 PF03379 CcmB protein AL539_RS07275 PF00005 ABC transporter AL539_RS07285 PF01584 CheW-like domain AL539_RS07295 PF13614 AAA domain AL539_RS07300 PF01339 CheB methylesterase AL539_RS07300 PF00072 Response regulator receiver domain AL539_RS07305 PF01584 CheW-like domain AL539_RS07305 PF02895 Signal transducing histidine kinase, homodimeric domain AL539_RS07305 PF01627 Hpt domain AL539_RS07305 PF00072 Response regulator receiver domain AL539_RS07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS07310 PF04344 Chemotaxis phosphatase, CheZ AL539_RS07315 PF00072 Response regulator receiver domain AL539_RS07320 PF04539 Sigma-70 region 3 AL539_RS07320 PF04545 Sigma-70, region 4 AL539_RS07320 PF04542 Sigma-70 region 2 AL539_RS07325 PF10609 NUBPL iron-transfer P-loop NTPase AL539_RS07330 PF00448 SRP54-type protein, GTPase domain AL539_RS07335 PF00771 FHIPEP family AL539_RS07340 PF01312 FlhB HrpN YscU SpaS Family AL539_RS07345 PF01311 Bacterial export proteins, family 1 AL539_RS07350 PF01313 Bacterial export proteins, family 3 AL539_RS07355 PF00813 FliP family AL539_RS07360 PF04347 Flagellar biosynthesis protein, FliO AL539_RS07365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_RS07370 PF02154 Flagellar motor switch protein FliM AL539_RS07370 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_RS07395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_RS07395 PF18269 T3SS EscN ATPase C-terminal domain AL539_RS07405 PF01706 FliG C-terminal domain AL539_RS07405 PF14842 FliG N-terminal domain AL539_RS07405 PF14841 FliG middle domain AL539_RS07410 PF08345 Flagellar M-ring protein C-terminal AL539_RS07410 PF01514 Secretory protein of YscJ/FliF family AL539_RS07415 PF02049 Flagellar hook-basal body complex protein FliE AL539_RS07420 PF00158 Sigma-54 interaction domain AL539_RS07420 PF02954 Bacterial regulatory protein, Fis family AL539_RS07420 PF00072 Response regulator receiver domain AL539_RS07425 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS07425 PF13188 PAS domain AL539_RS07425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS07430 PF06490 Flagellar regulatory protein FleQ AL539_RS07430 PF02954 Bacterial regulatory protein, Fis family AL539_RS07430 PF00158 Sigma-54 interaction domain AL539_RS07435 PF02561 Flagellar protein FliS AL539_RS07445 PF07196 Flagellin hook IN motif AL539_RS07445 PF02465 Flagellar hook-associated protein 2 N-terminus AL539_RS07445 PF07195 Flagellar hook-associated protein 2 C-terminus AL539_RS07450 PF03646 FlaG protein AL539_RS07455 PF00669 Bacterial flagellin N-terminal helical region AL539_RS07455 PF07196 Flagellin hook IN motif AL539_RS07455 PF00700 Bacterial flagellin C-terminal helical region AL539_RS07460 PF07196 Flagellin hook IN motif AL539_RS07460 PF00669 Bacterial flagellin N-terminal helical region AL539_RS07460 PF00700 Bacterial flagellin C-terminal helical region AL539_RS07470 PF07196 Flagellin hook IN motif AL539_RS07470 PF00700 Bacterial flagellin C-terminal helical region AL539_RS07470 PF00669 Bacterial flagellin N-terminal helical region AL539_RS07475 PF04261 Dyp-type peroxidase family AL539_RS07480 PF11143 Protein of unknown function (DUF2919) AL539_RS07500 PF03960 ArsC family AL539_RS07505 PF01546 Peptidase family M20/M25/M40 AL539_RS07505 PF07687 Peptidase dimerisation domain AL539_RS07520 PF06804 NlpB/DapX lipoprotein AL539_RS07525 PF00701 Dihydrodipicolinate synthetase family AL539_RS07535 PF00578 AhpC/TSA family AL539_RS07540 PF01594 AI-2E family transporter AL539_RS07550 PF01435 Peptidase family M48 AL539_RS07550 PF13181 Tetratricopeptide repeat AL539_RS07555 PF03960 ArsC family AL539_RS07560 PF03358 NADPH-dependent FMN reductase AL539_RS07575 PF00860 Permease family AL539_RS07585 PF02769 AIR synthase related protein, C-terminal domain AL539_RS07585 PF00586 AIR synthase related protein, N-terminal domain AL539_RS07590 PF00551 Formyl transferase AL539_RS07595 PF13230 Glutamine amidotransferases class-II AL539_RS07600 PF13580 SIS domain AL539_RS07605 PF09317 Domain of unknown function (DUF1974) AL539_RS07605 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_RS07605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_RS07605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_RS07610 PF01740 STAS domain AL539_RS07610 PF00916 Sulfate permease family AL539_RS07635 PF00929 Exonuclease AL539_RS07640 PF00075 RNase H AL539_RS07645 PF08241 Methyltransferase domain AL539_RS07650 PF00753 Metallo-beta-lactamase superfamily AL539_RS07650 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL539_RS07655 PF01464 Transglycosylase SLT domain AL539_RS07655 PF01476 LysM domain AL539_RS07665 PF03372 Endonuclease/Exonuclease/phosphatase family AL539_RS07670 PF00543 Nitrogen regulatory protein P-II AL539_RS07675 PF00034 Cytochrome c AL539_RS07680 PF01171 PP-loop family AL539_RS07680 PF09179 TilS substrate binding domain AL539_RS07680 PF11734 TilS substrate C-terminal domain AL539_RS07685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL539_RS07690 PF01336 OB-fold nucleic acid binding domain AL539_RS07690 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL539_RS07690 PF14579 Helix-hairpin-helix motif AL539_RS07690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL539_RS07690 PF02811 PHP domain AL539_RS07695 PF01351 Ribonuclease HII AL539_RS07700 PF02684 Lipid-A-disaccharide synthetase AL539_RS07705 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS07705 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL539_RS07710 PF07977 FabA-like domain AL539_RS07715 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS07715 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL539_RS07720 PF03938 Outer membrane protein (OmpH-like) AL539_RS07725 PF07244 Surface antigen variable number repeat AL539_RS07725 PF01103 Surface antigen AL539_RS07730 PF02163 Peptidase family M50 AL539_RS07730 PF17820 PDZ domain AL539_RS07735 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL539_RS07735 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL539_RS07735 PF13288 DXP reductoisomerase C-terminal domain AL539_RS07745 PF01255 Putative undecaprenyl diphosphate synthase AL539_RS07750 PF01765 Ribosome recycling factor AL539_RS07755 PF00696 Amino acid kinase family AL539_RS07760 PF00889 Elongation factor TS AL539_RS07765 PF00318 Ribosomal protein S2 AL539_RS07770 PF00557 Metallopeptidase family M24 AL539_RS07775 PF01909 Nucleotidyltransferase domain AL539_RS07775 PF08335 GlnD PII-uridylyltransferase AL539_RS07775 PF01842 ACT domain AL539_RS07775 PF01966 HD domain AL539_RS07780 PF11944 Protein of unknown function (DUF3461) AL539_RS07785 PF00849 RNA pseudouridylate synthase AL539_RS07790 PF04287 tRNA pseudouridine synthase C AL539_RS07820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL539_RS07825 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL539_RS07825 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL539_RS07830 PF01370 NAD dependent epimerase/dehydratase family AL539_RS07855 PF03806 AbgT putative transporter family AL539_RS07860 PF00444 Ribosomal protein L36 AL539_RS07865 PF01197 Ribosomal protein L31 AL539_RS07870 PF18389 TrmO C-terminal domain AL539_RS07870 PF01980 tRNA-methyltransferase O AL539_RS07875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL539_RS07875 PF03129 Anticodon binding domain AL539_RS07875 PF04073 Aminoacyl-tRNA editing domain AL539_RS07885 PF06786 Uncharacterised protein family (UPF0253) AL539_RS07895 PF00209 Sodium:neurotransmitter symporter family AL539_RS07900 PF06483 Chitinase C AL539_RS07900 PF00704 Glycosyl hydrolases family 18 AL539_RS07910 PF03449 Transcription elongation factor, N-terminal AL539_RS07910 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_RS07915 PF09382 RQC domain AL539_RS07915 PF16124 RecQ zinc-binding AL539_RS07915 PF00570 HRDC domain AL539_RS07915 PF00271 Helicase conserved C-terminal domain AL539_RS07915 PF00270 DEAD/DEAH box helicase AL539_RS07920 PF11798 IMS family HHH motif AL539_RS07920 PF11799 impB/mucB/samB family C-terminal domain AL539_RS07920 PF00817 impB/mucB/samB family AL539_RS07930 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS07930 PF00072 Response regulator receiver domain AL539_RS07940 PF02424 ApbE family AL539_RS07945 PF00970 Oxidoreductase FAD-binding domain AL539_RS07945 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS07945 PF00175 Oxidoreductase NAD-binding domain AL539_RS07950 PF02508 Rnf-Nqr subunit, membrane protein AL539_RS07955 PF02508 Rnf-Nqr subunit, membrane protein AL539_RS07960 PF04205 FMN-binding domain AL539_RS07965 PF03116 NQR2, RnfD, RnfE family AL539_RS07970 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL539_RS07970 PF11973 NQRA C-terminal domain AL539_RS07975 PF01722 BolA-like protein AL539_RS07980 PF05175 Methyltransferase small domain AL539_RS07985 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL539_RS07985 PF03923 Uncharacterized lipoprotein AL539_RS07990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL539_RS07995 PF07690 Major Facilitator Superfamily AL539_RS08005 PF04545 Sigma-70, region 4 AL539_RS08005 PF04542 Sigma-70 region 2 AL539_RS08025 PF03502 Nucleoside-specific channel-forming protein, Tsx AL539_RS08030 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL539_RS08030 PF02558 Ketopantoate reductase PanE/ApbA AL539_RS08035 PF01965 DJ-1/PfpI family AL539_RS08040 PF00266 Aminotransferase class-V AL539_RS08045 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS08045 PF17158 Membrane-associated sensor, integral membrane domain AL539_RS08050 PF02657 Fe-S metabolism associated domain AL539_RS08055 PF00899 ThiF family AL539_RS08060 PF06725 3D domain AL539_RS08060 PF03562 MltA specific insert domain AL539_RS08075 PF00696 Amino acid kinase family AL539_RS08075 PF00583 Acetyltransferase (GNAT) family AL539_RS08095 PF13538 UvrD-like helicase C-terminal domain AL539_RS08100 PF12705 PD-(D/E)XK nuclease superfamily AL539_RS08100 PF00580 UvrD/REP helicase N-terminal domain AL539_RS08100 PF13361 UvrD-like helicase C-terminal domain AL539_RS08105 PF17946 RecC C-terminal domain AL539_RS08110 PF11893 Domain of unknown function (DUF3413) AL539_RS08110 PF00884 Sulfatase AL539_RS08120 PF03466 LysR substrate binding domain AL539_RS08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS08125 PF07130 YebG protein AL539_RS08140 PF14602 Hexapeptide repeat of succinyl-transferase AL539_RS08140 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL539_RS08145 PF03009 Glycerophosphoryl diester phosphodiesterase family AL539_RS08150 PF07690 Major Facilitator Superfamily AL539_RS08160 PF00230 Major intrinsic protein AL539_RS08165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL539_RS08165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL539_RS08170 PF00455 DeoR C terminal sensor domain AL539_RS08170 PF08220 DeoR-like helix-turn-helix domain AL539_RS08175 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL539_RS08175 PF01266 FAD dependent oxidoreductase AL539_RS08180 PF01544 CorA-like Mg2+ transporter protein AL539_RS08200 PF00356 Bacterial regulatory proteins, lacI family AL539_RS08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS08205 PF03466 LysR substrate binding domain AL539_RS08215 PF00196 Bacterial regulatory proteins, luxR family AL539_RS08245 PF00501 AMP-binding enzyme AL539_RS08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS08255 PF03466 LysR substrate binding domain AL539_RS08260 PF00009 Elongation factor Tu GTP binding domain AL539_RS08260 PF03764 Elongation factor G, domain IV AL539_RS08260 PF14492 Elongation Factor G, domain II AL539_RS08260 PF03144 Elongation factor Tu domain 2 AL539_RS08260 PF00679 Elongation factor G C-terminus AL539_RS08265 PF18073 Rubredoxin metal binding domain AL539_RS08275 PF18429 Domain of unknown function (DUF5609) AL539_RS08285 PF01048 Phosphorylase superfamily AL539_RS08290 PF01676 Metalloenzyme superfamily AL539_RS08295 PF02885 Glycosyl transferase family, helical bundle domain AL539_RS08295 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL539_RS08295 PF00591 Glycosyl transferase family, a/b domain AL539_RS08300 PF01791 DeoC/LacD family aldolase AL539_RS08305 PF01773 Na+ dependent nucleoside transporter N-terminus AL539_RS08305 PF07662 Na+ dependent nucleoside transporter C-terminus AL539_RS08305 PF07670 Nucleoside recognition AL539_RS08310 PF01026 TatD related DNase AL539_RS08320 PF00009 Elongation factor Tu GTP binding domain AL539_RS08320 PF03144 Elongation factor Tu domain 2 AL539_RS08320 PF16658 Class II release factor RF3, C-terminal domain AL539_RS08340 PF13508 Acetyltransferase (GNAT) domain AL539_RS08345 PF02036 SCP-2 sterol transfer family AL539_RS08355 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS08355 PF00563 EAL domain AL539_RS08355 PF03707 Bacterial signalling protein N terminal repeat AL539_RS08360 PF01136 Peptidase family U32 AL539_RS08365 PF01136 Peptidase family U32 AL539_RS08370 PF01554 MatE AL539_RS08380 PF07719 Tetratricopeptide repeat AL539_RS08380 PF13181 Tetratricopeptide repeat AL539_RS08385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL539_RS08385 PF01138 3' exoribonuclease family, domain 1 AL539_RS08385 PF03725 3' exoribonuclease family, domain 2 AL539_RS08385 PF00575 S1 RNA binding domain AL539_RS08385 PF00013 KH domain AL539_RS08390 PF00312 Ribosomal protein S15 AL539_RS08395 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL539_RS08395 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL539_RS08395 PF09157 Pseudouridine synthase II TruB, C-terminal AL539_RS08400 PF02033 Ribosome-binding factor A AL539_RS08405 PF00009 Elongation factor Tu GTP binding domain AL539_RS08405 PF11987 Translation-initiation factor 2 AL539_RS08405 PF08364 Bacterial translation initiation factor IF-2 associated region AL539_RS08405 PF04760 Translation initiation factor IF-2, N-terminal region AL539_RS08410 PF08529 NusA N-terminal domain AL539_RS08410 PF13184 NusA-like KH domain AL539_RS08410 PF00575 S1 RNA binding domain AL539_RS08415 PF17384 RimP C-terminal SH3 domain AL539_RS08415 PF02576 RimP N-terminal domain AL539_RS08430 PF03840 Preprotein translocase SecG subunit AL539_RS08440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_RS08440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_RS08440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_RS08440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_RS08445 PF00809 Pterin binding enzyme AL539_RS08450 PF17862 AAA+ lid domain AL539_RS08450 PF06480 FtsH Extracellular AL539_RS08450 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS08450 PF01434 Peptidase family M41 AL539_RS08455 PF01728 FtsJ-like methyltransferase AL539_RS08460 PF01985 CRS1 / YhbY (CRM) domain AL539_RS08465 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_RS08465 PF03449 Transcription elongation factor, N-terminal AL539_RS08470 PF13609 Gram-negative porin AL539_RS08475 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL539_RS08485 PF00579 tRNA synthetases class I (W and Y) AL539_RS08490 PF01476 LysM domain AL539_RS08490 PF08525 Opacity-associated protein A N-terminal motif AL539_RS08490 PF01551 Peptidase family M23 AL539_RS08495 PF00873 AcrB/AcrD/AcrF family AL539_RS08505 PF01521 Iron-sulphur cluster biosynthesis AL539_RS08510 PF00202 Aminotransferase class-III AL539_RS08515 PF01594 AI-2E family transporter AL539_RS08520 PF08468 Methyltransferase small domain N-terminal AL539_RS08520 PF05175 Methyltransferase small domain AL539_RS08525 PF00072 Response regulator receiver domain AL539_RS08525 PF09308 LuxQ, periplasmic AL539_RS08525 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS08530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS08535 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS08540 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_RS08540 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS08545 PF00005 ABC transporter AL539_RS08545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS08550 PF00005 ABC transporter AL539_RS08550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS08560 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL539_RS08565 PF00728 Glycosyl hydrolase family 20, catalytic domain AL539_RS08565 PF02838 Glycosyl hydrolase family 20, domain 2 AL539_RS08570 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL539_RS08570 PF06165 Glycosyltransferase family 36 AL539_RS08575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_RS08575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_RS08575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_RS08575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_RS08580 PF08402 TOBE domain AL539_RS08580 PF00005 ABC transporter AL539_RS08590 PF13416 Bacterial extracellular solute-binding protein AL539_RS08595 PF00909 Ammonium Transporter Family AL539_RS08600 PF00543 Nitrogen regulatory protein P-II AL539_RS08605 PF06062 Uncharacterised protein family (UPF0231) AL539_RS08610 PF06434 Aconitate hydratase 2 N-terminus AL539_RS08610 PF11791 Aconitate B N-terminal domain AL539_RS08610 PF00330 Aconitase family (aconitate hydratase) AL539_RS08615 PF01734 Patatin-like phospholipase AL539_RS08620 PF00905 Penicillin binding protein transpeptidase domain AL539_RS08620 PF14814 Bifunctional transglycosylase second domain AL539_RS08620 PF00912 Transglycosylase AL539_RS08625 PF04408 Helicase associated domain (HA2) AL539_RS08625 PF08482 ATP-dependent helicase C-terminal AL539_RS08625 PF00271 Helicase conserved C-terminal domain AL539_RS08625 PF00270 DEAD/DEAH box helicase AL539_RS08630 PF03749 Sugar fermentation stimulation protein RE domain AL539_RS08630 PF17746 SfsA N-terminal OB domain AL539_RS08635 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL539_RS08640 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL539_RS08645 PF12626 Polymerase A arginine-rich C-terminus AL539_RS08645 PF01743 Poly A polymerase head domain AL539_RS08645 PF12627 Probable RNA and SrmB- binding site of polymerase A AL539_RS08650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL539_RS08655 PF02548 Ketopantoate hydroxymethyltransferase AL539_RS08660 PF02569 Pantoate-beta-alanine ligase AL539_RS08665 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_RS08675 PF01061 ABC-2 type transporter AL539_RS08680 PF00005 ABC transporter AL539_RS08685 PF01740 STAS domain AL539_RS08685 PF00916 Sulfate permease family AL539_RS08690 PF00484 Carbonic anhydrase AL539_RS08695 PF00156 Phosphoribosyl transferase domain AL539_RS08700 PF00440 Bacterial regulatory proteins, tetR family AL539_RS08705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_RS08705 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS08710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL539_RS08710 PF00364 Biotin-requiring enzyme AL539_RS08710 PF02817 e3 binding domain AL539_RS08715 PF17831 Pyruvate dehydrogenase E1 component middle domain AL539_RS08715 PF00456 Transketolase, thiamine diphosphate binding domain AL539_RS08720 PF00392 Bacterial regulatory proteins, gntR family AL539_RS08720 PF07729 FCD domain AL539_RS08725 PF01510 N-acetylmuramoyl-L-alanine amidase AL539_RS08730 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL539_RS08730 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL539_RS08735 PF00114 Pilin (bacterial filament) AL539_RS08735 PF07963 Prokaryotic N-terminal methylation motif AL539_RS08740 PF00437 Type II/IV secretion system protein AL539_RS08740 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL539_RS08745 PF00482 Type II secretion system (T2SS), protein F AL539_RS08750 PF01478 Type IV leader peptidase family AL539_RS08750 PF06750 Bacterial Peptidase A24 N-terminal domain AL539_RS08755 PF01121 Dephospho-CoA kinase AL539_RS08760 PF07072 Cell division protein AL539_RS08765 PF03884 DNA gyrase inhibitor YacG AL539_RS08770 PF01245 Ribosomal protein L19 AL539_RS08775 PF01746 tRNA (Guanine-1)-methyltransferase AL539_RS08780 PF05239 PRC-barrel domain AL539_RS08780 PF01782 RimM N-terminal domain AL539_RS08785 PF00886 Ribosomal protein S16 AL539_RS08790 PF02881 SRP54-type protein, helical bundle domain AL539_RS08790 PF00448 SRP54-type protein, GTPase domain AL539_RS08790 PF02978 Signal peptide binding domain AL539_RS08795 PF01578 Cytochrome C assembly protein AL539_RS08800 PF00571 CBS domain AL539_RS08800 PF03471 Transporter associated domain AL539_RS08800 PF01595 Cyclin M transmembrane N-terminal domain AL539_RS08805 PF02664 S-Ribosylhomocysteinase (LuxS) AL539_RS08815 PF04262 Glutamate-cysteine ligase AL539_RS08820 PF05193 Peptidase M16 inactive domain AL539_RS08820 PF00675 Insulinase (Peptidase family M16) AL539_RS08825 PF09335 SNARE associated Golgi protein AL539_RS08830 PF00107 Zinc-binding dehydrogenase AL539_RS08830 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS08835 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL539_RS08840 PF00682 HMGL-like AL539_RS08840 PF00364 Biotin-requiring enzyme AL539_RS08840 PF02436 Conserved carboxylase domain AL539_RS08845 PF04277 Oxaloacetate decarboxylase, gamma chain AL539_RS08900 PF02599 Global regulator protein family AL539_RS08905 PF01842 ACT domain AL539_RS08905 PF00696 Amino acid kinase family AL539_RS08905 PF13840 ACT domain AL539_RS08910 PF02272 DHHA1 domain AL539_RS08910 PF01411 tRNA synthetases class II (A) AL539_RS08910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL539_RS08915 PF02631 RecX family AL539_RS08920 PF00154 recA bacterial DNA recombination protein AL539_RS08925 PF02464 Competence-damaged protein AL539_RS08930 PF05190 MutS family domain IV AL539_RS08930 PF01624 MutS domain I AL539_RS08930 PF00488 MutS domain V AL539_RS08930 PF05192 MutS domain III AL539_RS08930 PF05188 MutS domain II AL539_RS08935 PF04545 Sigma-70, region 4 AL539_RS08935 PF00140 Sigma-70 factor, region 1.2 AL539_RS08935 PF04542 Sigma-70 region 2 AL539_RS08935 PF04539 Sigma-70 region 3 AL539_RS08940 PF01551 Peptidase family M23 AL539_RS08940 PF01476 LysM domain AL539_RS08950 PF01975 Survival protein SurE AL539_RS08955 PF01142 tRNA pseudouridine synthase D (TruD) AL539_RS08960 PF02542 YgbB family AL539_RS08965 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL539_RS08970 PF04977 Septum formation initiator AL539_RS08975 PF03952 Enolase, N-terminal domain AL539_RS08975 PF00113 Enolase, C-terminal TIM barrel domain AL539_RS08980 PF00117 Glutamine amidotransferase class-I AL539_RS08980 PF06418 CTP synthase N-terminus AL539_RS08985 PF03819 MazG nucleotide pyrophosphohydrolase domain AL539_RS08990 PF04607 Region found in RelA / SpoT proteins AL539_RS08990 PF02824 TGS domain AL539_RS08990 PF13291 ACT domain AL539_RS09000 PF05958 tRNA (Uracil-5-)-methyltransferase AL539_RS09000 PF01938 TRAM domain AL539_RS09010 PF00672 HAMP domain AL539_RS09010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS09010 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS09010 PF00072 Response regulator receiver domain AL539_RS09010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL539_RS09010 PF01627 Hpt domain AL539_RS09015 PF01648 4'-phosphopantetheinyl transferase superfamily AL539_RS09020 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL539_RS09025 PF02565 Recombination protein O C terminal AL539_RS09025 PF11967 Recombination protein O N terminal AL539_RS09030 PF01926 50S ribosome-binding GTPase AL539_RS09030 PF07650 KH domain AL539_RS09035 PF00035 Double-stranded RNA binding motif AL539_RS09035 PF14622 Ribonuclease-III-like AL539_RS09040 PF10502 Signal peptidase, peptidase S26 AL539_RS09045 PF03144 Elongation factor Tu domain 2 AL539_RS09045 PF06421 GTP-binding protein LepA C-terminus AL539_RS09045 PF00009 Elongation factor Tu GTP binding domain AL539_RS09045 PF00679 Elongation factor G C-terminus AL539_RS09055 PF03888 MucB/RseB N-terminal domain AL539_RS09055 PF17188 MucB/RseB C-terminal domain AL539_RS09060 PF03872 Anti sigma-E protein RseA, N-terminal domain AL539_RS09060 PF03873 Anti sigma-E protein RseA, C-terminal domain AL539_RS09065 PF08281 Sigma-70, region 4 AL539_RS09065 PF04542 Sigma-70 region 2 AL539_RS09075 PF02910 Fumarate reductase flavoprotein C-term AL539_RS09075 PF00890 FAD binding domain AL539_RS09085 PF03937 Flavinator of succinate dehydrogenase AL539_RS09090 PF01571 Aminomethyltransferase folate-binding domain AL539_RS09105 PF01494 FAD binding domain AL539_RS09110 PF01494 FAD binding domain AL539_RS09115 PF03695 Uncharacterised protein family (UPF0149) AL539_RS09125 PF05164 Cell division protein ZapA AL539_RS09135 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL539_RS09140 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL539_RS09145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_RS09145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_RS09145 PF01842 ACT domain AL539_RS09150 PF04402 Protein of unknown function (DUF541) AL539_RS09155 PF03466 LysR substrate binding domain AL539_RS09155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS09160 PF01810 LysE type translocator AL539_RS09170 PF05552 Conserved TM helix AL539_RS09170 PF00924 Mechanosensitive ion channel AL539_RS09175 PF01116 Fructose-bisphosphate aldolase class-II AL539_RS09180 PF00162 Phosphoglycerate kinase AL539_RS09185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_RS09185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS09190 PF07715 TonB-dependent Receptor Plug Domain AL539_RS09190 PF00593 TonB dependent receptor AL539_RS09195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS09195 PF03466 LysR substrate binding domain AL539_RS09200 PF00456 Transketolase, thiamine diphosphate binding domain AL539_RS09200 PF02779 Transketolase, pyrimidine binding domain AL539_RS09200 PF02780 Transketolase, C-terminal domain AL539_RS09210 PF02772 S-adenosylmethionine synthetase, central domain AL539_RS09210 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL539_RS09210 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL539_RS09220 PF10263 SprT-like family AL539_RS09220 PF17283 SprT-like zinc ribbon domain AL539_RS09225 PF04231 Endonuclease I AL539_RS09230 PF04452 RNA methyltransferase AL539_RS09235 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL539_RS09235 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL539_RS09240 PF02622 Uncharacterized ACR, COG1678 AL539_RS09245 PF03652 Holliday junction resolvase AL539_RS09250 PF00437 Type II/IV secretion system protein AL539_RS09255 PF00437 Type II/IV secretion system protein AL539_RS09260 PF01168 Alanine racemase, N-terminal domain AL539_RS09265 PF03807 NADP oxidoreductase coenzyme F420-dependent AL539_RS09265 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL539_RS09270 PF02325 YGGT family AL539_RS09275 PF02594 Uncharacterised ACR, YggU family COG1872 AL539_RS09285 PF01725 Ham1 family AL539_RS09290 PF04055 Radical SAM superfamily AL539_RS09290 PF06969 HemN C-terminal domain AL539_RS09295 PF04960 Glutaminase AL539_RS09300 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL539_RS09305 PF02390 Putative methyltransferase AL539_RS09310 PF14815 NUDIX domain AL539_RS09310 PF00730 HhH-GPD superfamily base excision DNA repair protein AL539_RS09330 PF00753 Metallo-beta-lactamase superfamily AL539_RS09330 PF14864 Alkyl sulfatase C-terminal AL539_RS09330 PF14863 Alkyl sulfatase dimerisation AL539_RS09340 PF01425 Amidase AL539_RS09350 PF12705 PD-(D/E)XK nuclease superfamily AL539_RS09350 PF00580 UvrD/REP helicase N-terminal domain AL539_RS09350 PF13361 UvrD-like helicase C-terminal domain AL539_RS09445 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS09445 PF00589 Phage integrase family AL539_RS09455 PF02463 RecF/RecN/SMC N terminal domain AL539_RS09465 PF14815 NUDIX domain AL539_RS09465 PF00730 HhH-GPD superfamily base excision DNA repair protein AL539_RS09485 PF14864 Alkyl sulfatase C-terminal AL539_RS09485 PF14863 Alkyl sulfatase dimerisation AL539_RS09485 PF00753 Metallo-beta-lactamase superfamily AL539_RS09495 PF01425 Amidase AL539_RS09590 PF00589 Phage integrase family AL539_RS09590 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS09600 PF02463 RecF/RecN/SMC N terminal domain AL539_RS09615 PF04362 Bacterial Fe(2+) trafficking AL539_RS09620 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL539_RS09620 PF01464 Transglycosylase SLT domain AL539_RS09660 PF00672 HAMP domain AL539_RS09660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS09660 PF17200 Single Cache domain 2 AL539_RS09695 PF00171 Aldehyde dehydrogenase family AL539_RS09745 PF00356 Bacterial regulatory proteins, lacI family AL539_RS09750 PF04794 YdjC-like protein AL539_RS09755 PF02056 Family 4 glycosyl hydrolase AL539_RS09755 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL539_RS09760 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL539_RS09765 PF02378 Phosphotransferase system, EIIC AL539_RS09770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_RS09775 PF01522 Polysaccharide deacetylase AL539_RS09790 PF10011 Predicted membrane protein (DUF2254) AL539_RS09800 PF03739 Lipopolysaccharide export system permease LptF/LptG AL539_RS09805 PF03739 Lipopolysaccharide export system permease LptF/LptG AL539_RS09810 PF00883 Cytosol aminopeptidase family, catalytic domain AL539_RS09810 PF02789 Cytosol aminopeptidase family, N-terminal domain AL539_RS09815 PF04364 DNA polymerase III chi subunit, HolC AL539_RS09820 PF10458 Valyl tRNA synthetase tRNA binding arm AL539_RS09820 PF08264 Anticodon-binding domain of tRNA AL539_RS09820 PF00133 tRNA synthetases class I (I, L, M and V) AL539_RS09830 PF00583 Acetyltransferase (GNAT) family AL539_RS09840 PF06877 Regulator of ribonuclease activity B AL539_RS09850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL539_RS09850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL539_RS09860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL539_RS09860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL539_RS09865 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL539_RS09865 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL539_RS09870 PF01042 Endoribonuclease L-PSP AL539_RS09875 PF01553 Acyltransferase AL539_RS09880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL539_RS09885 PF01722 BolA-like protein AL539_RS09895 PF05494 MlaC protein AL539_RS09900 PF02470 MlaD protein AL539_RS09905 PF02405 Permease MlaE AL539_RS09910 PF00005 ABC transporter AL539_RS09915 PF01699 Sodium/calcium exchanger protein AL539_RS09920 PF01380 SIS domain AL539_RS09920 PF00571 CBS domain AL539_RS09930 PF03968 OstA-like protein AL539_RS09935 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL539_RS09935 PF00005 ABC transporter AL539_RS09940 PF04552 Sigma-54, DNA binding domain AL539_RS09940 PF04963 Sigma-54 factor, core binding domain AL539_RS09940 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL539_RS09945 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL539_RS09950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_RS09955 PF03668 P-loop ATPase protein family AL539_RS09960 PF00381 PTS HPr component phosphorylation site AL539_RS09965 PF03448 MgtE intracellular N domain AL539_RS09965 PF01769 Divalent cation transporter AL539_RS09965 PF00571 CBS domain AL539_RS09970 PF01523 Putative modulator of DNA gyrase AL539_RS09975 PF04751 Protein of unknown function (DUF615) AL539_RS09980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_RS09980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_RS09985 PF00849 RNA pseudouridylate synthase AL539_RS09995 PF00271 Helicase conserved C-terminal domain AL539_RS09995 PF12137 RNA polymerase recycling family C-terminal AL539_RS09995 PF00176 SNF2 family N-terminal domain AL539_RS09995 PF18339 RapA N-terminal Tudor like domain 1 AL539_RS09995 PF18337 RapA N-terminal Tudor like domain AL539_RS10000 PF13638 PIN domain AL539_RS10000 PF02562 PhoH-like protein AL539_RS10005 PF01523 Putative modulator of DNA gyrase AL539_RS10010 PF00795 Carbon-nitrogen hydrolase AL539_RS10015 PF13116 Protein of unknown function AL539_RS10015 PF13502 AsmA-like C-terminal region AL539_RS10020 PF00575 S1 RNA binding domain AL539_RS10020 PF10150 Ribonuclease E/G family AL539_RS10025 PF02545 Maf-like protein AL539_RS10030 PF04093 rod shape-determining protein MreD AL539_RS10035 PF04085 rod shape-determining protein MreC AL539_RS10050 PF13737 Transposase DDE domain AL539_RS10060 PF00563 EAL domain AL539_RS10060 PF17157 Gammaproteobacterial periplasmic sensor domain AL539_RS10060 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS10065 PF00436 Single-strand binding protein family AL539_RS10070 PF00196 Bacterial regulatory proteins, luxR family AL539_RS10075 PF00483 Nucleotidyl transferase AL539_RS10080 PF17760 UvrA interaction domain AL539_RS10080 PF00005 ABC transporter AL539_RS10080 PF17755 UvrA DNA-binding domain AL539_RS10090 PF00266 Aminotransferase class-V AL539_RS10100 PF00696 Amino acid kinase family AL539_RS10100 PF01842 ACT domain AL539_RS10105 PF00809 Pterin binding enzyme AL539_RS10105 PF02310 B12 binding domain AL539_RS10105 PF02607 B12 binding domain AL539_RS10105 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL539_RS10105 PF02574 Homocysteine S-methyltransferase AL539_RS10110 PF00999 Sodium/hydrogen exchanger family AL539_RS10170 PF01507 Phosphoadenosine phosphosulfate reductase family AL539_RS10175 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL539_RS10175 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL539_RS10180 PF00667 FAD binding domain AL539_RS10180 PF00175 Oxidoreductase NAD-binding domain AL539_RS10180 PF00258 Flavodoxin AL539_RS10200 PF01207 Dihydrouridine synthase (Dus) AL539_RS10205 PF01475 Ferric uptake regulator family AL539_RS10215 PF00342 Phosphoglucose isomerase AL539_RS10220 PF01894 Uncharacterised protein family UPF0047 AL539_RS10225 PF00842 Alanine racemase, C-terminal domain AL539_RS10225 PF01168 Alanine racemase, N-terminal domain AL539_RS10230 PF03796 DnaB-like helicase C terminal domain AL539_RS10230 PF00772 DnaB-like helicase N terminal domain AL539_RS10240 PF03948 Ribosomal protein L9, C-terminal domain AL539_RS10240 PF01281 Ribosomal protein L9, N-terminal domain AL539_RS10245 PF01084 Ribosomal protein S18 AL539_RS10250 PF00436 Single-strand binding protein family AL539_RS10255 PF01250 Ribosomal protein S6 AL539_RS10260 PF00834 Ribulose-phosphate 3 epimerase family AL539_RS10265 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL539_RS10275 PF01761 3-dehydroquinate synthase AL539_RS10280 PF01202 Shikimate kinase AL539_RS10285 PF07660 Secretin and TonB N terminus short domain AL539_RS10285 PF11741 AMIN domain AL539_RS10285 PF00263 Bacterial type II and III secretion system protein AL539_RS10285 PF03958 Bacterial type II/III secretion system short domain AL539_RS10290 PF04351 Pilus assembly protein, PilP AL539_RS10310 PF17092 Penicillin-binding protein OB-like domain AL539_RS10310 PF00912 Transglycosylase AL539_RS10310 PF00905 Penicillin binding protein transpeptidase domain AL539_RS10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS10315 PF03466 LysR substrate binding domain AL539_RS10320 PF00462 Glutaredoxin AL539_RS10320 PF08534 Redoxin AL539_RS10325 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS10325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_RS10335 PF14698 Argininosuccinate lyase C-terminal AL539_RS10335 PF00206 Lyase AL539_RS10335 PF00583 Acetyltransferase (GNAT) family AL539_RS10340 PF00764 Arginosuccinate synthase AL539_RS10345 PF00696 Amino acid kinase family AL539_RS10350 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL539_RS10350 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL539_RS10355 PF01546 Peptidase family M20/M25/M40 AL539_RS10355 PF07687 Peptidase dimerisation domain AL539_RS10360 PF00311 Phosphoenolpyruvate carboxylase AL539_RS10370 PF02219 Methylenetetrahydrofolate reductase AL539_RS10375 PF03447 Homoserine dehydrogenase, NAD binding domain AL539_RS10375 PF00742 Homoserine dehydrogenase AL539_RS10375 PF00696 Amino acid kinase family AL539_RS10380 PF01053 Cys/Met metabolism PLP-dependent enzyme AL539_RS10385 PF01340 Met Apo-repressor, MetJ AL539_RS10390 PF03949 Malic enzyme, NAD binding domain AL539_RS10390 PF00390 Malic enzyme, N-terminal domain AL539_RS10395 PF00210 Ferritin-like domain AL539_RS10400 PF04324 BFD-like [2Fe-2S] binding domain AL539_RS10405 PF03144 Elongation factor Tu domain 2 AL539_RS10405 PF03143 Elongation factor Tu C-terminal domain AL539_RS10405 PF00009 Elongation factor Tu GTP binding domain AL539_RS10410 PF14492 Elongation Factor G, domain II AL539_RS10410 PF03764 Elongation factor G, domain IV AL539_RS10410 PF00009 Elongation factor Tu GTP binding domain AL539_RS10410 PF00679 Elongation factor G C-terminus AL539_RS10410 PF03144 Elongation factor Tu domain 2 AL539_RS10415 PF00177 Ribosomal protein S7p/S5e AL539_RS10420 PF00164 Ribosomal protein S12/S23 AL539_RS10425 PF04077 DsrH like protein AL539_RS10430 PF02635 DsrE/DsrF-like family AL539_RS10435 PF02635 DsrE/DsrF-like family AL539_RS10440 PF13309 HTH domain AL539_RS10440 PF08348 YheO-like PAS domain AL539_RS10445 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL539_RS10445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_RS10455 PF04102 SlyX AL539_RS10460 PF01112 Asparaginase AL539_RS10470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_RS10480 PF00999 Sodium/hydrogen exchanger family AL539_RS10480 PF02254 TrkA-N domain AL539_RS10485 PF02525 Flavodoxin-like fold AL539_RS10490 PF00005 ABC transporter AL539_RS10490 PF12848 ABC transporter AL539_RS10500 PF00561 alpha/beta hydrolase fold AL539_RS10505 PF06794 Uncharacterised protein family (UPF0270) AL539_RS10510 PF00485 Phosphoribulokinase / Uridine kinase family AL539_RS10515 PF00027 Cyclic nucleotide-binding domain AL539_RS10515 PF13545 Crp-like helix-turn-helix domain AL539_RS10525 PF00171 Aldehyde dehydrogenase family AL539_RS10530 PF04958 Arginine N-succinyltransferase beta subunit AL539_RS10535 PF00202 Aminotransferase class-III AL539_RS10540 PF00117 Glutamine amidotransferase class-I AL539_RS10545 PF01047 MarR family AL539_RS10550 PF00892 EamA-like transporter family AL539_RS10560 PF07687 Peptidase dimerisation domain AL539_RS10560 PF01546 Peptidase family M20/M25/M40 AL539_RS10565 PF03806 AbgT putative transporter family AL539_RS10570 PF03466 LysR substrate binding domain AL539_RS10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS10585 PF00579 tRNA synthetases class I (W and Y) AL539_RS10590 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS10595 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL539_RS10595 PF00588 SpoU rRNA Methylase family AL539_RS10600 PF17876 Cold shock domain AL539_RS10600 PF08461 Ribonuclease R winged-helix domain AL539_RS10600 PF08206 Ribonuclease B OB domain AL539_RS10600 PF00773 RNB domain AL539_RS10600 PF00575 S1 RNA binding domain AL539_RS10605 PF02082 Transcriptional regulator AL539_RS10610 PF00175 Oxidoreductase NAD-binding domain AL539_RS10610 PF00042 Globin AL539_RS10610 PF00970 Oxidoreductase FAD-binding domain AL539_RS10615 PF08238 Sel1 repeat AL539_RS10625 PF00709 Adenylosuccinate synthetase AL539_RS10630 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL539_RS10635 PF01145 SPFH domain / Band 7 family AL539_RS10640 PF01145 SPFH domain / Band 7 family AL539_RS10640 PF12221 Bacterial membrane protein N terminal AL539_RS10645 PF13167 GTP-binding GTPase N-terminal AL539_RS10645 PF01926 50S ribosome-binding GTPase AL539_RS10645 PF16360 GTP-binding GTPase Middle Region AL539_RS10650 PF17209 Hfq protein AL539_RS10660 PF08676 MutL C terminal dimerisation domain AL539_RS10660 PF01119 DNA mismatch repair protein, C-terminal domain AL539_RS10665 PF01520 N-acetylmuramoyl-L-alanine amidase AL539_RS10670 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL539_RS10680 PF08331 Domain of unknown function (DUF1730) AL539_RS10745 PF00929 Exonuclease AL539_RS10750 PF03193 RsgA GTPase AL539_RS10755 PF02666 Phosphatidylserine decarboxylase AL539_RS10760 PF02080 TrkA-C domain AL539_RS10760 PF03600 Citrate transporter AL539_RS10770 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL539_RS10770 PF01676 Metalloenzyme superfamily AL539_RS10775 PF00581 Rhodanese-like domain AL539_RS10780 PF02556 Preprotein translocase subunit SecB AL539_RS10785 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL539_RS10785 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL539_RS10790 PF06426 Serine acetyltransferase, N-terminal AL539_RS10790 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS10795 PF01551 Peptidase family M23 AL539_RS10805 PF08360 QacR-like protein, C-terminal region AL539_RS10805 PF00440 Bacterial regulatory proteins, tetR family AL539_RS10815 PF00152 tRNA synthetases class II (D, K and N) AL539_RS10820 PF02910 Fumarate reductase flavoprotein C-term AL539_RS10820 PF00890 FAD binding domain AL539_RS10825 PF13183 4Fe-4S dicluster domain AL539_RS10825 PF13085 2Fe-2S iron-sulfur cluster binding domain AL539_RS10830 PF02300 Fumarate reductase subunit C AL539_RS10835 PF02313 Fumarate reductase subunit D AL539_RS10845 PF08207 Elongation factor P (EF-P) KOW-like domain AL539_RS10845 PF09285 Elongation factor P, C-terminal AL539_RS10845 PF01132 Elongation factor P (EF-P) OB domain AL539_RS10850 PF04055 Radical SAM superfamily AL539_RS10855 PF02308 MgtC family AL539_RS10865 PF00118 TCP-1/cpn60 chaperonin family AL539_RS10870 PF00166 Chaperonin 10 Kd subunit AL539_RS10875 PF01554 MatE AL539_RS10880 PF00365 Phosphofructokinase AL539_RS10885 PF01545 Cation efflux family AL539_RS10885 PF16916 Dimerisation domain of Zinc Transporter AL539_RS10890 PF07813 LTXXQ motif family protein AL539_RS10895 PF00486 Transcriptional regulatory protein, C terminal AL539_RS10895 PF00072 Response regulator receiver domain AL539_RS10900 PF16527 Two-component sensor protein CpxA, periplasmic domain AL539_RS10900 PF00672 HAMP domain AL539_RS10900 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS10905 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL539_RS10905 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL539_RS10910 PF00588 SpoU rRNA Methylase family AL539_RS10915 PF04186 FxsA cytoplasmic membrane protein AL539_RS10920 PF10415 Fumarase C C-terminus AL539_RS10920 PF00206 Lyase AL539_RS10925 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL539_RS10930 PF11412 Disulphide bond corrector protein DsbC AL539_RS10930 PF02683 Cytochrome C biogenesis protein transmembrane region AL539_RS10935 PF00072 Response regulator receiver domain AL539_RS10935 PF00196 Bacterial regulatory proteins, luxR family AL539_RS10940 PF03471 Transporter associated domain AL539_RS10940 PF02080 TrkA-C domain AL539_RS10940 PF00999 Sodium/hydrogen exchanger family AL539_RS10950 PF00474 Sodium:solute symporter family AL539_RS10965 PF00206 Lyase AL539_RS10965 PF10415 Fumarase C C-terminus AL539_RS10970 PF09308 LuxQ, periplasmic AL539_RS10970 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS10970 PF00072 Response regulator receiver domain AL539_RS10970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS10975 PF12832 MFS_1 like family AL539_RS10990 PF13193 AMP-binding enzyme C-terminal domain AL539_RS10990 PF16177 Acetyl-coenzyme A synthetase N-terminus AL539_RS10990 PF00501 AMP-binding enzyme AL539_RS10995 PF01220 Dehydroquinase class II AL539_RS11000 PF00364 Biotin-requiring enzyme AL539_RS11005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL539_RS11005 PF00289 Biotin carboxylase, N-terminal domain AL539_RS11005 PF02785 Biotin carboxylase C-terminal domain AL539_RS11020 PF01207 Dihydrouridine synthase (Dus) AL539_RS11025 PF02954 Bacterial regulatory protein, Fis family AL539_RS11035 PF12848 ABC transporter AL539_RS11035 PF00005 ABC transporter AL539_RS11100 PF01276 Orn/Lys/Arg decarboxylase, major domain AL539_RS11100 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL539_RS11100 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL539_RS11105 PF13520 Amino acid permease AL539_RS11115 PF18500 CadC C-terminal domain 1 AL539_RS11115 PF00486 Transcriptional regulatory protein, C terminal AL539_RS11120 PF13411 MerR HTH family regulatory protein AL539_RS11130 PF01808 AICARFT/IMPCHase bienzyme AL539_RS11130 PF02142 MGS-like domain AL539_RS11135 PF02843 Phosphoribosylglycinamide synthetase, C domain AL539_RS11135 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL539_RS11135 PF02844 Phosphoribosylglycinamide synthetase, N domain AL539_RS11145 PF00216 Bacterial DNA-binding protein AL539_RS11150 PF01595 Cyclin M transmembrane N-terminal domain AL539_RS11150 PF00571 CBS domain AL539_RS11155 PF04222 Protein of unknown function (DUF416) AL539_RS11160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_RS11165 PF03167 Uracil DNA glycosylase superfamily AL539_RS11170 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL539_RS11175 PF09297 NADH pyrophosphatase zinc ribbon domain AL539_RS11175 PF00293 NUDIX domain AL539_RS11180 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL539_RS11185 PF04998 RNA polymerase Rpb1, domain 5 AL539_RS11185 PF04997 RNA polymerase Rpb1, domain 1 AL539_RS11185 PF04983 RNA polymerase Rpb1, domain 3 AL539_RS11185 PF00623 RNA polymerase Rpb1, domain 2 AL539_RS11185 PF05000 RNA polymerase Rpb1, domain 4 AL539_RS11190 PF00562 RNA polymerase Rpb2, domain 6 AL539_RS11190 PF10385 RNA polymerase beta subunit external 1 domain AL539_RS11190 PF04565 RNA polymerase Rpb2, domain 3 AL539_RS11190 PF04561 RNA polymerase Rpb2, domain 2 AL539_RS11190 PF04563 RNA polymerase beta subunit AL539_RS11190 PF04560 RNA polymerase Rpb2, domain 7 AL539_RS11195 PF00542 Ribosomal protein L7/L12 C-terminal domain AL539_RS11195 PF16320 Ribosomal protein L7/L12 dimerisation domain AL539_RS11200 PF00466 Ribosomal protein L10 AL539_RS11205 PF00687 Ribosomal protein L1p/L10e family AL539_RS11210 PF00298 Ribosomal protein L11, RNA binding domain AL539_RS11210 PF03946 Ribosomal protein L11, N-terminal domain AL539_RS11215 PF00467 KOW motif AL539_RS11215 PF02357 Transcription termination factor nusG AL539_RS11220 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL539_RS11230 PF03143 Elongation factor Tu C-terminal domain AL539_RS11230 PF03144 Elongation factor Tu domain 2 AL539_RS11230 PF00009 Elongation factor Tu GTP binding domain AL539_RS11255 PF00485 Phosphoribulokinase / Uridine kinase family AL539_RS11260 PF03099 Biotin/lipoate A/B protein ligase family AL539_RS11260 PF08279 HTH domain AL539_RS11260 PF02237 Biotin protein ligase C terminal domain AL539_RS11265 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL539_RS11265 PF01565 FAD binding domain AL539_RS11275 PF13091 PLD-like domain AL539_RS11345 PF01177 Asp/Glu/Hydantoin racemase AL539_RS11355 PF00593 TonB dependent receptor AL539_RS11355 PF07715 TonB-dependent Receptor Plug Domain AL539_RS11360 PF05958 tRNA (Uracil-5-)-methyltransferase AL539_RS11370 PF00440 Bacterial regulatory proteins, tetR family AL539_RS11375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS11375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_RS11380 PF01554 MatE AL539_RS11385 PF04072 Leucine carboxyl methyltransferase AL539_RS11395 PF01726 LexA DNA binding domain AL539_RS11395 PF00717 Peptidase S24-like AL539_RS11405 PF01553 Acyltransferase AL539_RS11410 PF01040 UbiA prenyltransferase family AL539_RS11415 PF04345 Chorismate lyase AL539_RS11420 PF03748 Flagellar basal body-associated protein FliL AL539_RS11425 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL539_RS11425 PF01694 Rhomboid family AL539_RS11430 PF00581 Rhodanese-like domain AL539_RS11440 PF04545 Sigma-70, region 4 AL539_RS11440 PF04542 Sigma-70 region 2 AL539_RS11440 PF00140 Sigma-70 factor, region 1.2 AL539_RS11445 PF18075 FtsX extracellular domain AL539_RS11450 PF00005 ABC transporter AL539_RS11455 PF02881 SRP54-type protein, helical bundle domain AL539_RS11455 PF00448 SRP54-type protein, GTPase domain AL539_RS11470 PF01914 MarC family integral membrane protein AL539_RS11495 PF10694 Protein of unknown function (DUF2500) AL539_RS11515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_RS11515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS11520 PF01022 Bacterial regulatory protein, arsR family AL539_RS11525 PF00563 EAL domain AL539_RS11525 PF08668 HDOD domain AL539_RS11530 PF01810 LysE type translocator AL539_RS11535 PF12146 Serine aminopeptidase, S33 AL539_RS11555 PF03942 DTW domain AL539_RS11560 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS11560 PF10442 FIST C domain AL539_RS11560 PF08495 FIST N domain AL539_RS11560 PF00563 EAL domain AL539_RS11565 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS11570 PF00589 Phage integrase family AL539_RS11570 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS11580 PF01678 Diaminopimelate epimerase AL539_RS11585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL539_RS11585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL539_RS11595 PF01491 Frataxin-like domain AL539_RS11600 PF12633 Adenylate cyclase NT domain AL539_RS11600 PF01295 Adenylate cyclase, class-I AL539_RS11605 PF03900 Porphobilinogen deaminase, C-terminal domain AL539_RS11605 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL539_RS11610 PF02602 Uroporphyrinogen-III synthase HemD AL539_RS11615 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL539_RS11620 PF07219 HemY protein N-terminus AL539_RS11660 PF00175 Oxidoreductase NAD-binding domain AL539_RS11665 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS11670 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL539_RS11680 PF07498 Rho termination factor, N-terminal domain AL539_RS11680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_RS11680 PF07497 Rho termination factor, RNA-binding domain AL539_RS11685 PF00085 Thioredoxin AL539_RS11690 PF00271 Helicase conserved C-terminal domain AL539_RS11690 PF00270 DEAD/DEAH box helicase AL539_RS11695 PF02541 Ppx/GppA phosphatase family AL539_RS11705 PF02592 Putative vitamin uptake transporter AL539_RS11715 PF00270 DEAD/DEAH box helicase AL539_RS11715 PF16124 RecQ zinc-binding AL539_RS11715 PF09382 RQC domain AL539_RS11715 PF00570 HRDC domain AL539_RS11715 PF00271 Helicase conserved C-terminal domain AL539_RS11720 PF00892 EamA-like transporter family AL539_RS11730 PF01810 LysE type translocator AL539_RS11745 PF00580 UvrD/REP helicase N-terminal domain AL539_RS11745 PF13361 UvrD-like helicase C-terminal domain AL539_RS11755 PF05114 Protein of unknown function (DUF692) AL539_RS11775 PF07690 Major Facilitator Superfamily AL539_RS11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS11780 PF03466 LysR substrate binding domain AL539_RS11785 PF00557 Metallopeptidase family M24 AL539_RS11785 PF01321 Creatinase/Prolidase N-terminal domain AL539_RS11785 PF01321 Creatinase/Prolidase N-terminal domain AL539_RS11785 PF00557 Metallopeptidase family M24 AL539_RS11790 PF06968 Biotin and Thiamin Synthesis associated domain AL539_RS11790 PF04055 Radical SAM superfamily AL539_RS11795 PF05690 Thiazole biosynthesis protein ThiG AL539_RS11800 PF02597 ThiS family AL539_RS11805 PF00899 ThiF family AL539_RS11810 PF02581 Thiamine monophosphate synthase AL539_RS11815 PF13667 ThiC-associated domain AL539_RS11815 PF01964 Radical SAM ThiC family AL539_RS11820 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL539_RS11825 PF00394 Multicopper oxidase AL539_RS11825 PF07732 Multicopper oxidase AL539_RS11825 PF07731 Multicopper oxidase AL539_RS11895 PF13495 Phage integrase, N-terminal SAM-like domain AL539_RS11895 PF00589 Phage integrase family AL539_RS11955 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS11960 PF07369 Protein of unknown function (DUF1488) AL539_RS11965 PF08501 Shikimate dehydrogenase substrate binding domain AL539_RS11965 PF01488 Shikimate / quinate 5-dehydrogenase AL539_RS11965 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL539_RS11970 PF01218 Coproporphyrinogen III oxidase AL539_RS11975 PF01300 Telomere recombination AL539_RS11980 PF00731 AIR carboxylase AL539_RS11985 PF02222 ATP-grasp domain AL539_RS11985 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL539_RS11990 PF01396 Topoisomerase DNA binding C4 zinc finger AL539_RS11995 PF04361 Protein of unknown function (DUF494) AL539_RS12000 PF17782 DprA winged helix domain AL539_RS12000 PF02481 DNA recombination-mediator protein A AL539_RS12010 PF01327 Polypeptide deformylase AL539_RS12015 PF02911 Formyl transferase, C-terminal domain AL539_RS12015 PF00551 Formyl transferase AL539_RS12020 PF01189 16S rRNA methyltransferase RsmB/F AL539_RS12020 PF01029 NusB family AL539_RS12025 PF02254 TrkA-N domain AL539_RS12025 PF02080 TrkA-C domain AL539_RS12030 PF02386 Cation transport protein AL539_RS12040 PF03006 Haemolysin-III related AL539_RS12045 PF07070 SpoOM protein AL539_RS12055 PF06288 Protein of unknown function (DUF1040) AL539_RS12060 PF13746 4Fe-4S dicluster domain AL539_RS12060 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL539_RS12060 PF12801 4Fe-4S binding domain AL539_RS12065 PF01636 Phosphotransferase enzyme family AL539_RS12070 PF01323 DSBA-like thioredoxin domain AL539_RS12075 PF01553 Acyltransferase AL539_RS12085 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL539_RS12085 PF01078 Magnesium chelatase, subunit ChlI AL539_RS12090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_RS12090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_RS12090 PF00205 Thiamine pyrophosphate enzyme, central domain AL539_RS12100 PF01063 Amino-transferase class IV AL539_RS12105 PF00920 Dehydratase family AL539_RS12110 PF00585 C-terminal regulatory domain of Threonine dehydratase AL539_RS12110 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS12115 PF03466 LysR substrate binding domain AL539_RS12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS12120 PF07690 Major Facilitator Superfamily AL539_RS12125 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS12130 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS12135 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS12135 PF12804 MobA-like NTP transferase domain AL539_RS12140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL539_RS12140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL539_RS12145 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL539_RS12145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_RS12150 PF00231 ATP synthase AL539_RS12155 PF00306 ATP synthase alpha/beta chain, C terminal domain AL539_RS12155 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL539_RS12155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_RS12160 PF00213 ATP synthase delta (OSCP) subunit AL539_RS12165 PF00430 ATP synthase B/B' CF(0) AL539_RS12170 PF00137 ATP synthase subunit C AL539_RS12175 PF00119 ATP synthase A chain AL539_RS12180 PF03899 ATP synthase I chain AL539_RS12185 PF02195 ParB-like nuclease domain AL539_RS12185 PF17762 HTH domain found in ParB protein AL539_RS12190 PF13614 AAA domain AL539_RS12195 PF02527 rRNA small subunit methyltransferase G AL539_RS12200 PF13932 GidA associated domain AL539_RS12200 PF01134 Glucose inhibited division protein A AL539_RS12210 PF00258 Flavodoxin AL539_RS12215 PF12631 MnmE helical domain AL539_RS12215 PF01926 50S ribosome-binding GTPase AL539_RS12215 PF10396 GTP-binding protein TrmE N-terminus AL539_RS12220 PF14849 YidC periplasmic domain AL539_RS12220 PF02096 60Kd inner membrane protein AL539_RS12225 PF01809 Putative membrane protein insertion efficiency factor AL539_RS12230 PF00825 Ribonuclease P AL539_RS12235 PF00468 Ribosomal protein L34 AL539_RS12240 PF00005 ABC transporter AL539_RS12245 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS12250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS12260 PF00308 Bacterial dnaA protein AL539_RS12260 PF08299 Bacterial dnaA protein helix-turn-helix AL539_RS12260 PF11638 DnaA N-terminal domain AL539_RS12265 PF02767 DNA polymerase III beta subunit, central domain AL539_RS12265 PF00712 DNA polymerase III beta subunit, N-terminal domain AL539_RS12265 PF02768 DNA polymerase III beta subunit, C-terminal domain AL539_RS12270 PF02463 RecF/RecN/SMC N terminal domain AL539_RS12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS12275 PF18053 DNA gyrase B subunit insert domain AL539_RS12275 PF00986 DNA gyrase B subunit, carboxyl terminus AL539_RS12275 PF01751 Toprim domain AL539_RS12275 PF00204 DNA gyrase B AL539_RS12295 PF00011 Hsp20/alpha crystallin family AL539_RS12300 PF00155 Aminotransferase class I and II AL539_RS12305 PF00128 Alpha amylase, catalytic domain AL539_RS12310 PF05746 DALR anticodon binding domain AL539_RS12310 PF02092 Glycyl-tRNA synthetase beta subunit AL539_RS12315 PF02091 Glycyl-tRNA synthetase alpha subunit AL539_RS12320 PF01169 Uncharacterized protein family UPF0016 AL539_RS12330 PF01206 Sulfurtransferase TusA AL539_RS12340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS12340 PF03466 LysR substrate binding domain AL539_RS12345 PF00107 Zinc-binding dehydrogenase AL539_RS12345 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS12350 PF02803 Thiolase, C-terminal domain AL539_RS12350 PF00108 Thiolase, N-terminal domain AL539_RS12355 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS12355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL539_RS12355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL539_RS12360 PF01205 Uncharacterized protein family UPF0029 AL539_RS12360 PF09186 Domain of unknown function (DUF1949) AL539_RS12365 PF02386 Cation transport protein AL539_RS12370 PF12724 Flavodoxin domain AL539_RS12410 PF03466 LysR substrate binding domain AL539_RS12410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS12415 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL539_RS12415 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL539_RS12420 PF04380 Membrane fusogenic activity AL539_RS12425 PF00873 AcrB/AcrD/AcrF family AL539_RS12430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS12435 PF16295 Tetracyclin repressor-like, C-terminal domain AL539_RS12435 PF00440 Bacterial regulatory proteins, tetR family AL539_RS12440 PF00580 UvrD/REP helicase N-terminal domain AL539_RS12440 PF13361 UvrD-like helicase C-terminal domain AL539_RS12445 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL539_RS12475 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS12485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS12485 PF00005 ABC transporter AL539_RS12490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS12495 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS12500 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS12500 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_RS12515 PF00356 Bacterial regulatory proteins, lacI family AL539_RS12515 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL539_RS12520 PF03466 LysR substrate binding domain AL539_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS12525 PF00893 Small Multidrug Resistance protein AL539_RS12530 PF00893 Small Multidrug Resistance protein AL539_RS12535 PF00920 Dehydratase family AL539_RS12540 PF01202 Shikimate kinase AL539_RS12545 PF02447 GntP family permease AL539_RS12550 PF01081 KDPG and KHG aldolase AL539_RS12555 PF01048 Phosphorylase superfamily AL539_RS12560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS12560 PF03466 LysR substrate binding domain AL539_RS12565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_RS12565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS12570 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL539_RS12575 PF01432 Peptidase family M3 AL539_RS12580 PF01037 Lrp/AsnC ligand binding domain AL539_RS12585 PF00563 EAL domain AL539_RS12585 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS12585 PF08448 PAS fold AL539_RS12590 PF04445 Putative SAM-dependent methyltransferase AL539_RS12600 PF00892 EamA-like transporter family AL539_RS12605 PF00582 Universal stress protein family AL539_RS12610 PF00210 Ferritin-like domain AL539_RS12615 PF10625 Universal stress protein B (UspB) AL539_RS12625 PF01590 GAF domain AL539_RS12625 PF02954 Bacterial regulatory protein, Fis family AL539_RS12625 PF00158 Sigma-54 interaction domain AL539_RS12650 PF00781 Diacylglycerol kinase catalytic domain AL539_RS12680 PF01594 AI-2E family transporter AL539_RS12685 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS12685 PF00563 EAL domain AL539_RS12685 PF03707 Bacterial signalling protein N terminal repeat AL539_RS12695 PF02646 RmuC family AL539_RS12700 PF01209 ubiE/COQ5 methyltransferase family AL539_RS12705 PF02036 SCP-2 sterol transfer family AL539_RS12710 PF03109 ABC1 family AL539_RS12715 PF02416 mttA/Hcf106 family AL539_RS12720 PF02416 mttA/Hcf106 family AL539_RS12725 PF00902 Sec-independent protein translocase protein (TatC) AL539_RS12740 PF01026 TatD related DNase AL539_RS12750 PF00490 Delta-aminolevulinic acid dehydratase AL539_RS12755 PF00583 Acetyltransferase (GNAT) family AL539_RS12765 PF01612 3'-5' exonuclease AL539_RS12765 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL539_RS12765 PF01367 5'-3' exonuclease, C-terminal SAM fold AL539_RS12765 PF00476 DNA polymerase family A AL539_RS12770 PF01926 50S ribosome-binding GTPase AL539_RS12775 PF00034 Cytochrome c AL539_RS12790 PF04220 Der GTPase activator (YihI) AL539_RS12795 PF10675 Protein of unknown function (DUF2489) AL539_RS12800 PF06969 HemN C-terminal domain AL539_RS12800 PF04055 Radical SAM superfamily AL539_RS12805 PF00962 Adenosine/AMP deaminase AL539_RS12810 PF03707 Bacterial signalling protein N terminal repeat AL539_RS12810 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS12810 PF00563 EAL domain AL539_RS12815 PF00072 Response regulator receiver domain AL539_RS12815 PF02954 Bacterial regulatory protein, Fis family AL539_RS12815 PF00158 Sigma-54 interaction domain AL539_RS12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS12820 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS12820 PF00989 PAS fold AL539_RS12830 PF00120 Glutamine synthetase, catalytic domain AL539_RS12830 PF03951 Glutamine synthetase, beta-Grasp domain AL539_RS12835 PF03144 Elongation factor Tu domain 2 AL539_RS12835 PF00009 Elongation factor Tu GTP binding domain AL539_RS12835 PF00679 Elongation factor G C-terminus AL539_RS12840 PF08299 Bacterial dnaA protein helix-turn-helix AL539_RS12840 PF00308 Bacterial dnaA protein AL539_RS12850 PF03631 Virulence factor BrkB AL539_RS12855 PF02580 D-Tyr-tRNA(Tyr) deacylase AL539_RS12860 PF09500 Putative thioesterase (yiiD_Cterm) AL539_RS12860 PF00583 Acetyltransferase (GNAT) family AL539_RS12870 PF01293 Phosphoenolpyruvate carboxykinase AL539_RS12875 PF01430 Hsp33 protein AL539_RS12880 PF01479 S4 domain AL539_RS12885 PF11356 Type II secretion system protein C AL539_RS12890 PF00263 Bacterial type II and III secretion system protein AL539_RS12890 PF03958 Bacterial type II/III secretion system short domain AL539_RS12895 PF00437 Type II/IV secretion system protein AL539_RS12900 PF00482 Type II secretion system (T2SS), protein F AL539_RS12905 PF07963 Prokaryotic N-terminal methylation motif AL539_RS12905 PF08334 Type II secretion system (T2SS), protein G AL539_RS12910 PF12019 Type II transport protein GspH AL539_RS12915 PF02501 Type II secretion system (T2SS), protein I AL539_RS12915 PF07963 Prokaryotic N-terminal methylation motif AL539_RS12920 PF11612 Type II secretion system (T2SS), protein J AL539_RS12920 PF07963 Prokaryotic N-terminal methylation motif AL539_RS12925 PF03934 Type II secretion system (T2SS), protein K AL539_RS12930 PF05134 Type II secretion system (T2SS), protein L AL539_RS12930 PF12693 GspL periplasmic domain AL539_RS12935 PF04612 Type II secretion system (T2SS), protein M AL539_RS12940 PF01203 Type II secretion system (T2SS), protein N AL539_RS12945 PF00459 Inositol monophosphatase family AL539_RS12950 PF00293 NUDIX domain AL539_RS12955 PF01106 NifU-like domain AL539_RS12955 PF01521 Iron-sulphur cluster biosynthesis AL539_RS12960 PF00156 Phosphoribosyl transferase domain AL539_RS12965 PF00561 alpha/beta hydrolase fold AL539_RS12975 PF09371 Tex-like protein N-terminal domain AL539_RS12975 PF16921 Tex protein YqgF-like domain AL539_RS12975 PF17674 HHH domain AL539_RS12975 PF00575 S1 RNA binding domain AL539_RS12985 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_RS12985 PF03449 Transcription elongation factor, N-terminal AL539_RS12995 PF00072 Response regulator receiver domain AL539_RS12995 PF00486 Transcriptional regulatory protein, C terminal AL539_RS13000 PF00672 HAMP domain AL539_RS13000 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS13000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS13005 PF00860 Permease family AL539_RS13010 PF17191 RecG wedge domain AL539_RS13010 PF00270 DEAD/DEAH box helicase AL539_RS13010 PF00271 Helicase conserved C-terminal domain AL539_RS13015 PF12105 SpoU, rRNA methylase, C-terminal AL539_RS13015 PF00588 SpoU rRNA Methylase family AL539_RS13020 PF13291 ACT domain AL539_RS13020 PF02824 TGS domain AL539_RS13020 PF04607 Region found in RelA / SpoT proteins AL539_RS13025 PF01192 RNA polymerase Rpb6 AL539_RS13030 PF00625 Guanylate kinase AL539_RS13050 PF02472 Biopolymer transport protein ExbD/TolR AL539_RS13055 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS13070 PF00593 TonB dependent receptor AL539_RS13070 PF07715 TonB-dependent Receptor Plug Domain AL539_RS13080 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS13085 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_RS13085 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS13090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS13095 PF00005 ABC transporter AL539_RS13095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS13100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS13100 PF00005 ABC transporter AL539_RS13110 PF08340 Domain of unknown function (DUF1732) AL539_RS13110 PF03755 YicC-like family, N-terminal region AL539_RS13120 PF01138 3' exoribonuclease family, domain 1 AL539_RS13120 PF03725 3' exoribonuclease family, domain 2 AL539_RS13125 PF00156 Phosphoribosyl transferase domain AL539_RS13130 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_RS13135 PF00440 Bacterial regulatory proteins, tetR family AL539_RS13140 PF02441 Flavoprotein AL539_RS13140 PF04127 DNA / pantothenate metabolism flavoprotein AL539_RS13150 PF17200 Single Cache domain 2 AL539_RS13150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS13150 PF00672 HAMP domain AL539_RS13155 PF04002 RadC-like JAB domain AL539_RS13160 PF00830 Ribosomal L28 family AL539_RS13165 PF00471 Ribosomal protein L33 AL539_RS13175 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL539_RS13175 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL539_RS13175 PF06827 Zinc finger found in FPG and IleRS AL539_RS13190 PF01467 Cytidylyltransferase-like AL539_RS13195 PF05686 Glycosyl transferase family 90 AL539_RS13200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL539_RS13205 PF00534 Glycosyl transferases group 1 AL539_RS13205 PF13439 Glycosyltransferase Family 4 AL539_RS13210 PF01219 Prokaryotic diacylglycerol kinase AL539_RS13220 PF16363 GDP-mannose 4,6 dehydratase AL539_RS13225 PF00483 Nucleotidyl transferase AL539_RS13230 PF04321 RmlD substrate binding domain AL539_RS13235 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AL539_RS13240 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL539_RS13250 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS13260 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL539_RS13265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL539_RS13270 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_RS13275 PF01370 NAD dependent epimerase/dehydratase family AL539_RS13280 PF06082 Exopolysaccharide biosynthesis protein YbjH AL539_RS13315 PF16363 GDP-mannose 4,6 dehydratase AL539_RS13320 PF00483 Nucleotidyl transferase AL539_RS13325 PF04321 RmlD substrate binding domain AL539_RS13330 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AL539_RS13335 PF01467 Cytidylyltransferase-like AL539_RS13345 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AL539_RS13360 PF00535 Glycosyl transferase family 2 AL539_RS13370 PF02397 Bacterial sugar transferase AL539_RS13375 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS13380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL539_RS13385 PF02719 Polysaccharide biosynthesis protein AL539_RS13390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL539_RS13390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL539_RS13390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL539_RS13395 PF10996 Beta-Casp domain AL539_RS13395 PF00753 Metallo-beta-lactamase superfamily AL539_RS13395 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL539_RS13405 PF00121 Triosephosphate isomerase AL539_RS13425 PF00455 DeoR C terminal sensor domain AL539_RS13425 PF08220 DeoR-like helix-turn-helix domain AL539_RS13430 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL539_RS13435 PF06005 Cell division protein ZapB AL539_RS13440 PF03737 Aldolase/RraA AL539_RS13445 PF01040 UbiA prenyltransferase family AL539_RS13475 PF04002 RadC-like JAB domain AL539_RS13485 PF07724 AAA domain (Cdc48 subfamily) AL539_RS13485 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS13490 PF00227 Proteasome subunit AL539_RS13500 PF00356 Bacterial regulatory proteins, lacI family AL539_RS13505 PF00271 Helicase conserved C-terminal domain AL539_RS13505 PF00270 DEAD/DEAH box helicase AL539_RS13505 PF17764 3′ DNA-binding domain (3′BD) AL539_RS13505 PF18074 Primosomal protein N C-terminal domain AL539_RS13505 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL539_RS13515 PF01197 Ribosomal protein L31 AL539_RS13520 PF00338 Ribosomal protein S10p/S20e AL539_RS13525 PF00297 Ribosomal protein L3 AL539_RS13530 PF00573 Ribosomal protein L4/L1 family AL539_RS13535 PF00276 Ribosomal protein L23 AL539_RS13540 PF03947 Ribosomal Proteins L2, C-terminal domain AL539_RS13540 PF00181 Ribosomal Proteins L2, RNA binding domain AL539_RS13545 PF00203 Ribosomal protein S19 AL539_RS13550 PF00237 Ribosomal protein L22p/L17e AL539_RS13555 PF07650 KH domain AL539_RS13555 PF00189 Ribosomal protein S3, C-terminal domain AL539_RS13560 PF00252 Ribosomal protein L16p/L10e AL539_RS13565 PF00831 Ribosomal L29 protein AL539_RS13570 PF00366 Ribosomal protein S17 AL539_RS13575 PF00238 Ribosomal protein L14p/L23e AL539_RS13580 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL539_RS13580 PF00467 KOW motif AL539_RS13585 PF00673 ribosomal L5P family C-terminus AL539_RS13585 PF00281 Ribosomal protein L5 AL539_RS13590 PF00253 Ribosomal protein S14p/S29e AL539_RS13595 PF00410 Ribosomal protein S8 AL539_RS13600 PF00347 Ribosomal protein L6 AL539_RS13605 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL539_RS13610 PF00333 Ribosomal protein S5, N-terminal domain AL539_RS13610 PF03719 Ribosomal protein S5, C-terminal domain AL539_RS13615 PF00327 Ribosomal protein L30p/L7e AL539_RS13620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL539_RS13625 PF00344 SecY translocase AL539_RS13630 PF00444 Ribosomal protein L36 AL539_RS13635 PF00416 Ribosomal protein S13/S18 AL539_RS13640 PF00411 Ribosomal protein S11 AL539_RS13645 PF00163 Ribosomal protein S4/S9 N-terminal domain AL539_RS13645 PF01479 S4 domain AL539_RS13650 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL539_RS13650 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL539_RS13650 PF01000 RNA polymerase Rpb3/RpoA insert domain AL539_RS13655 PF01196 Ribosomal protein L17 AL539_RS13665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_RS13665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL539_RS13675 PF13673 Acetyltransferase (GNAT) domain AL539_RS13680 PF00271 Helicase conserved C-terminal domain AL539_RS13680 PF00270 DEAD/DEAH box helicase AL539_RS13680 PF03880 DbpA RNA binding domain AL539_RS13690 PF00149 Calcineurin-like phosphoesterase AL539_RS13690 PF02872 5'-nucleotidase, C-terminal domain AL539_RS13695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_RS13695 PF10414 Sirohaem synthase dimerisation region AL539_RS13695 PF14824 Sirohaem biosynthesis protein central AL539_RS13700 PF01507 Phosphoadenosine phosphosulfate reductase family AL539_RS13705 PF00009 Elongation factor Tu GTP binding domain AL539_RS13710 PF02080 TrkA-C domain AL539_RS13710 PF03600 Citrate transporter AL539_RS13735 PF00005 ABC transporter AL539_RS13745 PF10795 Protein of unknown function (DUF2607) AL539_RS13750 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL539_RS13755 PF06526 Protein of unknown function (DUF1107) AL539_RS13760 PF01625 Peptide methionine sulfoxide reductase AL539_RS13765 PF17243 POTRA domain TamA domain 1 AL539_RS13765 PF01103 Surface antigen AL539_RS13765 PF07244 Surface antigen variable number repeat AL539_RS13770 PF04357 TamB, inner membrane protein subunit of TAM complex AL539_RS13775 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL539_RS13785 PF13737 Transposase DDE domain AL539_RS13795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS13815 PF12729 Four helix bundle sensory module for signal transduction AL539_RS13815 PF00672 HAMP domain AL539_RS13815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS13830 PF00719 Inorganic pyrophosphatase AL539_RS13835 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL539_RS13845 PF08245 Mur ligase middle domain AL539_RS13845 PF02875 Mur ligase family, glutamate ligase domain AL539_RS13845 PF01225 Mur ligase family, catalytic domain AL539_RS13850 PF02441 Flavoprotein AL539_RS13860 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS13865 PF00005 ABC transporter AL539_RS13870 PF03466 LysR substrate binding domain AL539_RS13870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS13875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_RS13895 PF16868 NMT1-like family AL539_RS13905 PF01316 Arginine repressor, DNA binding domain AL539_RS13905 PF02863 Arginine repressor, C-terminal domain AL539_RS13910 PF00056 lactate/malate dehydrogenase, NAD binding domain AL539_RS13910 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL539_RS13920 PF00348 Polyprenyl synthetase AL539_RS13925 PF00829 Ribosomal prokaryotic L21 protein AL539_RS13930 PF01016 Ribosomal L27 protein AL539_RS13935 PF01926 50S ribosome-binding GTPase AL539_RS13935 PF01018 GTP1/OBG AL539_RS13940 PF06738 Putative threonine/serine exporter AL539_RS13945 PF12821 Threonine/Serine exporter, ThrE AL539_RS13950 PF00186 Dihydrofolate reductase AL539_RS13955 PF00149 Calcineurin-like phosphoesterase AL539_RS13960 PF04379 ApaG domain AL539_RS13965 PF00398 Ribosomal RNA adenine dimethylase AL539_RS13970 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL539_RS13975 PF09312 SurA N-terminal domain AL539_RS13980 PF03968 OstA-like protein AL539_RS13980 PF04453 LPS transport system D AL539_RS13985 PF05099 Tellurite resistance protein TerB AL539_RS13985 PF00226 DnaJ domain AL539_RS13995 PF00694 Aconitase C-terminal domain AL539_RS14000 PF00330 Aconitase family (aconitate hydratase) AL539_RS14005 PF00180 Isocitrate/isopropylmalate dehydrogenase AL539_RS14010 PF00682 HMGL-like AL539_RS14010 PF08502 LeuA allosteric (dimerisation) domain AL539_RS14025 PF01569 PAP2 superfamily AL539_RS14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS14035 PF03466 LysR substrate binding domain AL539_RS14040 PF00501 AMP-binding enzyme AL539_RS14045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_RS14045 PF00205 Thiamine pyrophosphate enzyme, central domain AL539_RS14045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_RS14050 PF10369 Small subunit of acetolactate synthase AL539_RS14055 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS14065 PF02887 Pyruvate kinase, alpha/beta domain AL539_RS14065 PF00224 Pyruvate kinase, barrel domain AL539_RS14070 PF00455 DeoR C terminal sensor domain AL539_RS14070 PF08220 DeoR-like helix-turn-helix domain AL539_RS14075 PF01380 SIS domain AL539_RS14080 PF08721 TnsA endonuclease C terminal AL539_RS14080 PF08722 TnsA endonuclease N terminal AL539_RS14085 PF00665 Integrase core domain AL539_RS14090 PF11426 Tn7 transposition regulator TnsC AL539_RS14090 PF13401 AAA domain AL539_RS14095 PF06527 TniQ AL539_RS14095 PF15978 Tn7-like transposition protein D AL539_RS14105 PF12161 HsdM N-terminal domain AL539_RS14105 PF02384 N-6 DNA Methylase AL539_RS14110 PF01420 Type I restriction modification DNA specificity domain AL539_RS14115 PF04851 Type III restriction enzyme, res subunit AL539_RS14115 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_RS14115 PF08463 EcoEI R protein C-terminal AL539_RS14115 PF00271 Helicase conserved C-terminal domain AL539_RS14130 PF00465 Iron-containing alcohol dehydrogenase AL539_RS14135 PF02733 Dak1 domain AL539_RS14140 PF02734 DAK2 domain AL539_RS14145 PF00391 PEP-utilising enzyme, mobile domain AL539_RS14145 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_RS14145 PF05524 PEP-utilising enzyme, N-terminal AL539_RS14150 PF02954 Bacterial regulatory protein, Fis family AL539_RS14150 PF00989 PAS fold AL539_RS14150 PF00158 Sigma-54 interaction domain AL539_RS14155 PF05068 Mannitol repressor AL539_RS14160 PF08125 Mannitol dehydrogenase C-terminal domain AL539_RS14160 PF01232 Mannitol dehydrogenase Rossmann domain AL539_RS14165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_RS14165 PF02378 Phosphotransferase system, EIIC AL539_RS14165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_RS14185 PF03180 NLPA lipoprotein AL539_RS14205 PF00313 'Cold-shock' DNA-binding domain AL539_RS14220 PF00313 'Cold-shock' DNA-binding domain AL539_RS14230 PF13657 HipA N-terminal domain AL539_RS14230 PF07804 HipA-like C-terminal domain AL539_RS14260 PF00580 UvrD/REP helicase N-terminal domain AL539_RS14260 PF13361 UvrD-like helicase C-terminal domain AL539_RS14280 PF07804 HipA-like C-terminal domain AL539_RS14280 PF13657 HipA N-terminal domain AL539_RS14295 PF04546 Sigma-70, non-essential region AL539_RS14295 PF03979 Sigma-70 factor, region 1.1 AL539_RS14295 PF04545 Sigma-70, region 4 AL539_RS14295 PF00140 Sigma-70 factor, region 1.2 AL539_RS14295 PF04542 Sigma-70 region 2 AL539_RS14295 PF04539 Sigma-70 region 3 AL539_RS14300 PF01807 CHC2 zinc finger AL539_RS14300 PF08278 DNA primase DnaG DnaB-binding AL539_RS14300 PF08275 DNA primase catalytic core, N-terminal domain AL539_RS14300 PF10410 DnaB-helicase binding domain of primase AL539_RS14305 PF09424 Yqey-like protein AL539_RS14310 PF01165 Ribosomal protein S21 AL539_RS14315 PF00814 Glycoprotease family AL539_RS14320 PF00561 alpha/beta hydrolase fold AL539_RS14325 PF02660 Glycerol-3-phosphate acyltransferase AL539_RS14330 PF02152 Dihydroneopterin aldolase AL539_RS14335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL539_RS14340 PF02673 Bacitracin resistance protein BacA AL539_RS14345 PF12627 Probable RNA and SrmB- binding site of polymerase A AL539_RS14345 PF01966 HD domain AL539_RS14345 PF01743 Poly A polymerase head domain AL539_RS14350 PF01471 Putative peptidoglycan binding domain AL539_RS14350 PF13401 AAA domain AL539_RS14365 PF08239 Bacterial SH3 domain AL539_RS14370 PF01384 Phosphate transporter family AL539_RS14375 PF01865 Protein of unknown function DUF47 AL539_RS14380 PF01928 CYTH domain AL539_RS14390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS14390 PF00672 HAMP domain AL539_RS14390 PF02743 Cache domain AL539_RS14395 PF03710 Glutamate-ammonia ligase adenylyltransferase AL539_RS14395 PF08335 GlnD PII-uridylyltransferase AL539_RS14400 PF01467 Cytidylyltransferase-like AL539_RS14400 PF00294 pfkB family carbohydrate kinase AL539_RS14405 PF02321 Outer membrane efflux protein AL539_RS14410 PF00293 NUDIX domain AL539_RS14415 PF06853 Protein of unknown function (DUF1249) AL539_RS14420 PF00149 Calcineurin-like phosphoesterase AL539_RS14425 PF05728 Uncharacterised protein family (UPF0227) AL539_RS14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS14430 PF00204 DNA gyrase B AL539_RS14430 PF00986 DNA gyrase B subunit, carboxyl terminus AL539_RS14430 PF01751 Toprim domain AL539_RS14435 PF03989 DNA gyrase C-terminal domain, beta-propeller AL539_RS14435 PF00521 DNA gyrase/topoisomerase IV, subunit A AL539_RS14440 PF13180 PDZ domain AL539_RS14445 PF00595 PDZ domain AL539_RS14450 PF06295 Protein of unknown function (DUF1043) AL539_RS14460 PF03969 AFG1-like ATPase AL539_RS14470 PF00572 Ribosomal protein L13 AL539_RS14475 PF00380 Ribosomal protein S9/S16 AL539_RS14480 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL539_RS14480 PF00355 Rieske [2Fe-2S] domain AL539_RS14485 PF00033 Cytochrome b/b6/petB AL539_RS14485 PF00032 Cytochrome b(C-terminal)/b6/petD AL539_RS14490 PF02167 Cytochrome C1 family AL539_RS14495 PF00043 Glutathione S-transferase, C-terminal domain AL539_RS14495 PF02798 Glutathione S-transferase, N-terminal domain AL539_RS14500 PF04386 Stringent starvation protein B AL539_RS14505 PF04972 BON domain AL539_RS14510 PF13580 SIS domain AL539_RS14515 PF02021 Uncharacterised protein family UPF0102 AL539_RS14520 PF04348 LppC putative lipoprotein AL539_RS14525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_RS14540 PF01795 MraW methylase family AL539_RS14545 PF04999 Cell division protein FtsL AL539_RS14550 PF00905 Penicillin binding protein transpeptidase domain AL539_RS14550 PF03717 Penicillin-binding Protein dimerisation domain AL539_RS14555 PF02875 Mur ligase family, glutamate ligase domain AL539_RS14555 PF01225 Mur ligase family, catalytic domain AL539_RS14555 PF08245 Mur ligase middle domain AL539_RS14560 PF01225 Mur ligase family, catalytic domain AL539_RS14560 PF08245 Mur ligase middle domain AL539_RS14560 PF02875 Mur ligase family, glutamate ligase domain AL539_RS14565 PF00953 Glycosyl transferase family 4 AL539_RS14565 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL539_RS14570 PF08245 Mur ligase middle domain AL539_RS14570 PF02875 Mur ligase family, glutamate ligase domain AL539_RS14575 PF01098 Cell cycle protein AL539_RS14580 PF03033 Glycosyltransferase family 28 N-terminal domain AL539_RS14580 PF04101 Glycosyltransferase family 28 C-terminal domain AL539_RS14585 PF01225 Mur ligase family, catalytic domain AL539_RS14585 PF02875 Mur ligase family, glutamate ligase domain AL539_RS14585 PF08245 Mur ligase middle domain AL539_RS14590 PF08478 POTRA domain, FtsQ-type AL539_RS14590 PF03799 Cell division protein FtsQ AL539_RS14595 PF02491 SHS2 domain inserted in FTSA AL539_RS14600 PF00091 Tubulin/FtsZ family, GTPase domain AL539_RS14600 PF12327 FtsZ family, C-terminal domain AL539_RS14605 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL539_RS14615 PF02810 SEC-C motif AL539_RS14615 PF07517 SecA DEAD-like domain AL539_RS14615 PF01043 SecA preprotein cross-linking domain AL539_RS14615 PF07516 SecA Wing and Scaffold domain AL539_RS14620 PF00293 NUDIX domain AL539_RS14625 PF05173 Dihydrodipicolinate reductase, C-terminus AL539_RS14625 PF01113 Dihydrodipicolinate reductase, N-terminus AL539_RS14630 PF00117 Glutamine amidotransferase class-I AL539_RS14630 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL539_RS14635 PF02142 MGS-like domain AL539_RS14635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL539_RS14635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL539_RS14650 PF01925 Sulfite exporter TauE/SafE AL539_RS14655 PF03466 LysR substrate binding domain AL539_RS14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS14660 PF03458 UPF0126 domain AL539_RS14665 PF01497 Periplasmic binding protein AL539_RS14670 PF03186 CobD/Cbib protein AL539_RS14670 PF17113 Regulatory signalling modulator protein AmpE AL539_RS14675 PF01048 Phosphorylase superfamily AL539_RS14685 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS14685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL539_RS14690 PF01493 GXGXG motif AL539_RS14690 PF01645 Conserved region in glutamate synthase AL539_RS14690 PF04898 Glutamate synthase central domain AL539_RS14690 PF00310 Glutamine amidotransferases class-II AL539_RS14695 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL539_RS14695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS14700 PF01645 Conserved region in glutamate synthase AL539_RS14700 PF01493 GXGXG motif AL539_RS14700 PF00310 Glutamine amidotransferases class-II AL539_RS14700 PF04898 Glutamate synthase central domain AL539_RS14705 PF04055 Radical SAM superfamily AL539_RS14705 PF16199 Radical_SAM C-terminal domain AL539_RS14710 PF00563 EAL domain AL539_RS14710 PF01590 GAF domain AL539_RS14710 PF00360 Phytochrome region AL539_RS14710 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS14715 PF00072 Response regulator receiver domain AL539_RS14715 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS14715 PF00989 PAS fold AL539_RS14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS14715 PF01627 Hpt domain AL539_RS14715 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL539_RS14725 PF00486 Transcriptional regulatory protein, C terminal AL539_RS14725 PF00072 Response regulator receiver domain AL539_RS14740 PF03737 Aldolase/RraA AL539_RS14755 PF01842 ACT domain AL539_RS14755 PF00696 Amino acid kinase family AL539_RS14755 PF13840 ACT domain AL539_RS14755 PF03447 Homoserine dehydrogenase, NAD binding domain AL539_RS14755 PF00742 Homoserine dehydrogenase AL539_RS14760 PF00288 GHMP kinases N terminal domain AL539_RS14760 PF08544 GHMP kinases C terminal AL539_RS14765 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS14765 PF14821 Threonine synthase N terminus AL539_RS14775 PF01228 Glycine radical AL539_RS14780 PF01261 Xylose isomerase-like TIM barrel AL539_RS14790 PF03167 Uracil DNA glycosylase superfamily AL539_RS14805 PF01235 Sodium:alanine symporter family AL539_RS14810 PF03883 Peroxide stress protein YaaA AL539_RS14815 PF00271 Helicase conserved C-terminal domain AL539_RS14815 PF00270 DEAD/DEAH box helicase AL539_RS14820 PF05175 Methyltransferase small domain AL539_RS14825 PF05525 Branched-chain amino acid transport protein AL539_RS14830 PF00258 Flavodoxin AL539_RS14835 PF00589 Phage integrase family AL539_RS14835 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS14840 PF10411 Disulfide bond isomerase protein N-terminus AL539_RS14840 PF13098 Thioredoxin-like domain AL539_RS14845 PF02272 DHHA1 domain AL539_RS14845 PF01368 DHH family AL539_RS14845 PF17768 RecJ OB domain AL539_RS14855 PF00152 tRNA synthetases class II (D, K and N) AL539_RS14855 PF01336 OB-fold nucleic acid binding domain AL539_RS14860 PF02954 Bacterial regulatory protein, Fis family AL539_RS14860 PF00072 Response regulator receiver domain AL539_RS14860 PF00158 Sigma-54 interaction domain AL539_RS14870 PF00248 Aldo/keto reductase family AL539_RS14880 PF02976 DNA mismatch repair enzyme MutH AL539_RS14885 PF00293 NUDIX domain AL539_RS14890 PF05524 PEP-utilising enzyme, N-terminal AL539_RS14890 PF01590 GAF domain AL539_RS14890 PF00391 PEP-utilising enzyme, mobile domain AL539_RS14890 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_RS14895 PF01925 Sulfite exporter TauE/SafE AL539_RS14900 PF01790 Prolipoprotein diacylglyceryl transferase AL539_RS14905 PF00303 Thymidylate synthase AL539_RS14915 PF02690 Na+/Pi-cotransporter AL539_RS14920 PF03466 LysR substrate binding domain AL539_RS14920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS14925 PF01022 Bacterial regulatory protein, arsR family AL539_RS14930 PF01649 Ribosomal protein S20 AL539_RS14935 PF03023 Lipid II flippase MurJ AL539_RS14940 PF06574 FAD synthetase AL539_RS14940 PF01687 Riboflavin kinase AL539_RS14945 PF06827 Zinc finger found in FPG and IleRS AL539_RS14945 PF08264 Anticodon-binding domain of tRNA AL539_RS14945 PF00133 tRNA synthetases class I (I, L, M and V) AL539_RS14950 PF01252 Signal peptidase (SPase) II AL539_RS14955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_RS14960 PF02401 LytB protein AL539_RS14970 PF04397 LytTr DNA-binding domain AL539_RS14970 PF00072 Response regulator receiver domain AL539_RS14975 PF06580 Histidine kinase AL539_RS14975 PF07694 5TMR of 5TMR-LYT AL539_RS14980 PF02554 Carbon starvation protein CstA AL539_RS14995 PF01380 SIS domain AL539_RS15000 PF03702 Anhydro-N-acetylmuramic acid kinase AL539_RS15005 PF00933 Glycosyl hydrolase family 3 N terminal domain AL539_RS15010 PF00793 DAHP synthetase I family AL539_RS15015 PF01817 Chorismate mutase type II AL539_RS15015 PF02153 Prephenate dehydrogenase AL539_RS15020 PF01551 Peptidase family M23 AL539_RS15020 PF04225 Opacity-associated protein A LysM-like domain AL539_RS15025 PF07238 PilZ domain AL539_RS15030 PF12848 ABC transporter AL539_RS15030 PF00005 ABC transporter AL539_RS15035 PF01464 Transglycosylase SLT domain AL539_RS15035 PF14718 Soluble lytic murein transglycosylase L domain AL539_RS15040 PF01371 Trp repressor protein AL539_RS15045 PF01931 Protein of unknown function DUF84 AL539_RS15050 PF01817 Chorismate mutase type II AL539_RS15050 PF00800 Prephenate dehydratase AL539_RS15055 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL539_RS15060 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS15060 PF01464 Transglycosylase SLT domain AL539_RS15065 PF13525 Outer membrane lipoprotein AL539_RS15070 PF01479 S4 domain AL539_RS15070 PF00849 RNA pseudouridylate synthase AL539_RS15075 PF02578 Multi-copper polyphenol oxidoreductase laccase AL539_RS15080 PF02861 Clp amino terminal domain, pathogenicity island component AL539_RS15080 PF17871 AAA lid domain AL539_RS15080 PF07724 AAA domain (Cdc48 subfamily) AL539_RS15080 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS15080 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_RS15130 PF03411 Penicillin-insensitive murein endopeptidase AL539_RS15145 PF00037 4Fe-4S binding domain AL539_RS15150 PF16325 Peptidase family U32 C-terminal domain AL539_RS15150 PF01136 Peptidase family U32 AL539_RS15155 PF04381 Putative exonuclease, RdgC AL539_RS15165 PF00486 Transcriptional regulatory protein, C terminal AL539_RS15165 PF00072 Response regulator receiver domain AL539_RS15170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS15170 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS15170 PF00989 PAS fold AL539_RS15170 PF11808 Phosphate regulon sensor protein PhoR AL539_RS15175 PF12849 PBP superfamily domain AL539_RS15180 PF02541 Ppx/GppA phosphatase family AL539_RS15185 PF17941 Polyphosphate kinase C-terminal domain 1 AL539_RS15185 PF13089 Polyphosphate kinase N-terminal domain AL539_RS15185 PF02503 Polyphosphate kinase middle domain AL539_RS15185 PF13090 Polyphosphate kinase C-terminal domain 2 AL539_RS15190 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS15195 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS15200 PF00005 ABC transporter AL539_RS15205 PF01895 PhoU domain AL539_RS15210 PF03976 Polyphosphate kinase 2 (PPK2) AL539_RS15215 PF03932 CutC family AL539_RS15220 PF00578 AhpC/TSA family AL539_RS15220 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL539_RS15225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS15225 PF03466 LysR substrate binding domain AL539_RS15230 PF01274 Malate synthase AL539_RS15235 PF00463 Isocitrate lyase family AL539_RS15240 PF00571 CBS domain AL539_RS15250 PF02547 Queuosine biosynthesis protein AL539_RS15255 PF01702 Queuine tRNA-ribosyltransferase AL539_RS15260 PF02699 Preprotein translocase subunit AL539_RS15265 PF02355 Protein export membrane protein AL539_RS15265 PF13721 SecD export protein N-terminal TM region AL539_RS15265 PF07549 SecD/SecF GG Motif AL539_RS15270 PF02355 Protein export membrane protein AL539_RS15270 PF07549 SecD/SecF GG Motif AL539_RS15285 PF00459 Inositol monophosphatase family AL539_RS15290 PF00588 SpoU rRNA Methylase family AL539_RS15295 PF02082 Transcriptional regulator AL539_RS15300 PF00266 Aminotransferase class-V AL539_RS15305 PF01592 NifU-like N terminal domain AL539_RS15310 PF01521 Iron-sulphur cluster biosynthesis AL539_RS15315 PF00226 DnaJ domain AL539_RS15315 PF07743 HSCB C-terminal oligomerisation domain AL539_RS15320 PF00012 Hsp70 protein AL539_RS15325 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS15330 PF04384 Iron-sulphur cluster assembly AL539_RS15335 PF00883 Cytosol aminopeptidase family, catalytic domain AL539_RS15335 PF12404 Peptidase AL539_RS15340 PF00334 Nucleoside diphosphate kinase AL539_RS15345 PF04055 Radical SAM superfamily AL539_RS15350 PF13464 Domain of unknown function (DUF4115) AL539_RS15355 PF04551 GcpE protein AL539_RS15360 PF13393 Histidyl-tRNA synthetase AL539_RS15360 PF03129 Anticodon binding domain AL539_RS15365 PF09976 Tetratricopeptide repeat-like domain AL539_RS15370 PF13360 PQQ-like domain AL539_RS15375 PF01926 50S ribosome-binding GTPase AL539_RS15375 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL539_RS15390 PF13742 OB-fold nucleic acid binding domain AL539_RS15390 PF02601 Exonuclease VII, large subunit AL539_RS15395 PF00571 CBS domain AL539_RS15395 PF00478 IMP dehydrogenase / GMP reductase domain AL539_RS15400 PF02540 NAD synthase AL539_RS15400 PF00117 Glutamine amidotransferase class-I AL539_RS15400 PF00958 GMP synthase C terminal domain AL539_RS15405 PF03553 Na+/H+ antiporter family AL539_RS15410 PF06483 Chitinase C AL539_RS15410 PF00704 Glycosyl hydrolases family 18 AL539_RS15415 PF01184 GPR1/FUN34/yaaH family AL539_RS15420 PF01235 Sodium:alanine symporter family AL539_RS15425 PF01266 FAD dependent oxidoreductase AL539_RS15435 PF01053 Cys/Met metabolism PLP-dependent enzyme AL539_RS15440 PF00202 Aminotransferase class-III AL539_RS15460 PF00795 Carbon-nitrogen hydrolase AL539_RS15460 PF00583 Acetyltransferase (GNAT) family AL539_RS15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS15465 PF03466 LysR substrate binding domain AL539_RS15510 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS15510 PF10442 FIST C domain AL539_RS15510 PF08495 FIST N domain AL539_RS15510 PF00563 EAL domain AL539_RS15515 PF03707 Bacterial signalling protein N terminal repeat AL539_RS15515 PF00563 EAL domain AL539_RS15515 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS15515 PF13188 PAS domain AL539_RS15520 PF12833 Helix-turn-helix domain AL539_RS15535 PF13333 Integrase core domain AL539_RS15535 PF00665 Integrase core domain AL539_RS15535 PF13276 HTH-like domain AL539_RS15540 PF13333 Integrase core domain AL539_RS15540 PF00665 Integrase core domain AL539_RS15540 PF13276 HTH-like domain AL539_RS15545 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS15545 PF07694 5TMR of 5TMR-LYT AL539_RS15565 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS15565 PF00589 Phage integrase family AL539_RS15585 PF07804 HipA-like C-terminal domain AL539_RS15585 PF13657 HipA N-terminal domain AL539_RS15605 PF13737 Transposase DDE domain AL539_RS15645 PF02796 Helix-turn-helix domain of resolvase AL539_RS15645 PF00239 Resolvase, N terminal domain AL539_RS15655 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_RS15655 PF11867 Domain of unknown function (DUF3387) AL539_RS15655 PF18766 SWI2/SNF2 ATPase AL539_RS15660 PF01420 Type I restriction modification DNA specificity domain AL539_RS15665 PF12161 HsdM N-terminal domain AL539_RS15665 PF02384 N-6 DNA Methylase AL539_RS15700 PF13356 Arm DNA-binding domain AL539_RS15700 PF00589 Phage integrase family AL539_RS15710 PF01668 SmpB protein AL539_RS15715 PF03364 Polyketide cyclase / dehydrase and lipid transport AL539_RS15720 PF03658 RnfH family Ubiquitin AL539_RS15725 PF04355 SmpA / OmlA family AL539_RS15735 PF02463 RecF/RecN/SMC N terminal domain AL539_RS15745 PF01513 ATP-NAD kinase AL539_RS15750 PF01025 GrpE AL539_RS15755 PF00375 Sodium:dicarboxylate symporter family AL539_RS15760 PF00012 Hsp70 protein AL539_RS15765 PF00684 DnaJ central domain AL539_RS15765 PF01556 DnaJ C terminal domain AL539_RS15765 PF00226 DnaJ domain AL539_RS15770 PF07963 Prokaryotic N-terminal methylation motif AL539_RS15770 PF00114 Pilin (bacterial filament) AL539_RS15775 PF00114 Pilin (bacterial filament) AL539_RS15775 PF07963 Prokaryotic N-terminal methylation motif AL539_RS15795 PF03806 AbgT putative transporter family AL539_RS15800 PF14437 MafB19-like deaminase AL539_RS15810 PF01464 Transglycosylase SLT domain AL539_RS15810 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS15815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL539_RS15815 PF02769 AIR synthase related protein, C-terminal domain AL539_RS15815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL539_RS15830 PF07715 TonB-dependent Receptor Plug Domain AL539_RS15830 PF00593 TonB dependent receptor AL539_RS15845 PF01546 Peptidase family M20/M25/M40 AL539_RS15845 PF07687 Peptidase dimerisation domain AL539_RS15850 PF00860 Permease family AL539_RS15855 PF00156 Phosphoribosyl transferase domain AL539_RS15860 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AL539_RS15865 PF07417 Sigma factor-binding transcriptional regulator Crl AL539_RS15870 PF00696 Amino acid kinase family AL539_RS15870 PF01472 PUA domain AL539_RS15875 PF00171 Aldehyde dehydrogenase family AL539_RS15880 PF03477 ATP cone domain AL539_RS15885 PF01872 RibD C-terminal domain AL539_RS15885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_RS15890 PF00677 Lumazine binding domain AL539_RS15895 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL539_RS15895 PF00925 GTP cyclohydrolase II AL539_RS15900 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL539_RS15905 PF01029 NusB family AL539_RS15910 PF02769 AIR synthase related protein, C-terminal domain AL539_RS15910 PF00586 AIR synthase related protein, N-terminal domain AL539_RS15915 PF04608 Phosphatidylglycerophosphatase A AL539_RS15920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL539_RS15920 PF02780 Transketolase, C-terminal domain AL539_RS15920 PF02779 Transketolase, pyrimidine binding domain AL539_RS15925 PF00348 Polyprenyl synthetase AL539_RS15930 PF02609 Exonuclease VII small subunit AL539_RS15935 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS15940 PF00691 OmpA family AL539_RS15940 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL539_RS15945 PF02568 Thiamine biosynthesis protein (ThiI) AL539_RS15945 PF02926 THUMP domain AL539_RS15950 PF03466 LysR substrate binding domain AL539_RS15950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS15960 PF04241 Protein of unknown function (DUF423) AL539_RS15965 PF01728 FtsJ-like methyltransferase AL539_RS15965 PF18125 RlmM ferredoxin-like domain AL539_RS15970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL539_RS15970 PF01367 5'-3' exonuclease, C-terminal SAM fold AL539_RS15975 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL539_RS15975 PF11892 Domain of unknown function (DUF3412) AL539_RS15975 PF03641 Possible lysine decarboxylase AL539_RS15980 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS15990 PF14489 QueF-like protein AL539_RS15990 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL539_RS15995 PF07348 Syd protein (SUKH-2) AL539_RS16000 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL539_RS16005 PF03180 NLPA lipoprotein AL539_RS16010 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS16015 PF09383 NIL domain AL539_RS16015 PF00005 ABC transporter AL539_RS16025 PF00356 Bacterial regulatory proteins, lacI family AL539_RS16030 PF02378 Phosphotransferase system, EIIC AL539_RS16030 PF00367 phosphotransferase system, EIIB AL539_RS16035 PF00128 Alpha amylase, catalytic domain AL539_RS16035 PF16657 Maltogenic Amylase, C-terminal domain AL539_RS16050 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL539_RS16050 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL539_RS16055 PF00464 Serine hydroxymethyltransferase AL539_RS16060 PF04055 Radical SAM superfamily AL539_RS16060 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL539_RS16065 PF03099 Biotin/lipoate A/B protein ligase family AL539_RS16070 PF04359 Protein of unknown function (DUF493) AL539_RS16075 PF07943 Penicillin-binding protein 5, C-terminal domain AL539_RS16075 PF00768 D-alanyl-D-alanine carboxypeptidase AL539_RS16080 PF05036 Sporulation related domain AL539_RS16080 PF03330 Lytic transglycolase AL539_RS16085 PF01098 Cell cycle protein AL539_RS16090 PF03717 Penicillin-binding Protein dimerisation domain AL539_RS16090 PF00905 Penicillin binding protein transpeptidase domain AL539_RS16095 PF02590 Predicted SPOUT methyltransferase AL539_RS16105 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL539_RS16105 PF06144 DNA polymerase III, delta subunit AL539_RS16110 PF04390 Lipopolysaccharide-assembly AL539_RS16115 PF13603 Leucyl-tRNA synthetase, Domain 2 AL539_RS16115 PF00133 tRNA synthetases class I (I, L, M and V) AL539_RS16115 PF08264 Anticodon-binding domain of tRNA AL539_RS16120 PF07295 Zinc-ribbon containing domain AL539_RS16125 PF00795 Carbon-nitrogen hydrolase AL539_RS16130 PF00571 CBS domain AL539_RS16130 PF03471 Transporter associated domain AL539_RS16135 PF02130 Uncharacterized protein family UPF0054 AL539_RS16140 PF02562 PhoH-like protein AL539_RS16145 PF04055 Radical SAM superfamily AL539_RS16145 PF00919 Uncharacterized protein family UPF0004 AL539_RS16145 PF01938 TRAM domain AL539_RS16155 PF01494 FAD binding domain AL539_RS16265 PF06071 Protein of unknown function (DUF933) AL539_RS16265 PF01926 50S ribosome-binding GTPase AL539_RS16270 PF01195 Peptidyl-tRNA hydrolase AL539_RS16275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL539_RS16275 PF14572 Phosphoribosyl synthetase-associated domain AL539_RS16280 PF00288 GHMP kinases N terminal domain AL539_RS16280 PF08544 GHMP kinases C terminal AL539_RS16285 PF03550 Outer membrane lipoprotein LolB AL539_RS16290 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL539_RS16290 PF01488 Shikimate / quinate 5-dehydrogenase AL539_RS16290 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL539_RS16295 PF03462 PCRF domain AL539_RS16295 PF00472 RF-1 domain AL539_RS16300 PF13847 Methyltransferase domain AL539_RS16300 PF17827 PrmC N-terminal domain AL539_RS16305 PF04247 Invasion gene expression up-regulator, SirB AL539_RS16310 PF13369 Transglutaminase-like superfamily AL539_RS16315 PF00793 DAHP synthetase I family AL539_RS16320 PF00149 Calcineurin-like phosphoesterase AL539_RS16320 PF02872 5'-nucleotidase, C-terminal domain AL539_RS16325 PF04073 Aminoacyl-tRNA editing domain AL539_RS16330 PF01479 S4 domain AL539_RS16330 PF00849 RNA pseudouridylate synthase AL539_RS16335 PF01713 Smr domain AL539_RS16360 PF03173 Putative carbohydrate binding domain AL539_RS16360 PF02838 Glycosyl hydrolase family 20, domain 2 AL539_RS16360 PF00728 Glycosyl hydrolase family 20, catalytic domain AL539_RS16360 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL539_RS16375 PF00403 Heavy-metal-associated domain AL539_RS16385 PF13609 Gram-negative porin AL539_RS16390 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL539_RS16395 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL539_RS16400 PF00691 OmpA family AL539_RS16400 PF01389 OmpA-like transmembrane domain AL539_RS16445 PF01584 CheW-like domain AL539_RS16445 PF00072 Response regulator receiver domain AL539_RS16450 PF01739 CheR methyltransferase, SAM binding domain AL539_RS16450 PF03705 CheR methyltransferase, all-alpha domain AL539_RS16455 PF00460 Flagella basal body rod protein AL539_RS16460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS16460 PF00460 Flagella basal body rod protein AL539_RS16465 PF03963 Flagellar hook capping protein - N-terminal region AL539_RS16465 PF13860 FlgD Ig-like domain AL539_RS16465 PF13861 FlgD Tudor-like domain AL539_RS16470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS16470 PF00460 Flagella basal body rod protein AL539_RS16470 PF07559 Flagellar basal body protein FlaE AL539_RS16475 PF00460 Flagella basal body rod protein AL539_RS16475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS16480 PF00460 Flagella basal body rod protein AL539_RS16480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS16485 PF02107 Flagellar L-ring protein AL539_RS16490 PF02119 Flagellar P-ring protein AL539_RS16495 PF10135 Rod binding protein AL539_RS16495 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL539_RS16500 PF07196 Flagellin hook IN motif AL539_RS16500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS16505 PF00669 Bacterial flagellin N-terminal helical region AL539_RS16510 PF00700 Bacterial flagellin C-terminal helical region AL539_RS16510 PF07196 Flagellin hook IN motif AL539_RS16510 PF00669 Bacterial flagellin N-terminal helical region AL539_RS16520 PF07196 Flagellin hook IN motif AL539_RS16520 PF00669 Bacterial flagellin N-terminal helical region AL539_RS16520 PF00700 Bacterial flagellin C-terminal helical region AL539_RS16525 PF00669 Bacterial flagellin N-terminal helical region AL539_RS16525 PF07196 Flagellin hook IN motif AL539_RS16525 PF00700 Bacterial flagellin C-terminal helical region AL539_RS16530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL539_RS16535 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_RS16535 PF00391 PEP-utilising enzyme, mobile domain AL539_RS16535 PF05524 PEP-utilising enzyme, N-terminal AL539_RS16540 PF00381 PTS HPr component phosphorylation site AL539_RS16550 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS16560 PF04354 ZipA, C-terminal FtsZ-binding domain AL539_RS16565 PF01653 NAD-dependent DNA ligase adenylation domain AL539_RS16565 PF12826 Helix-hairpin-helix motif AL539_RS16565 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL539_RS16565 PF03120 NAD-dependent DNA ligase OB-fold domain AL539_RS16565 PF00533 BRCA1 C Terminus (BRCT) domain AL539_RS16570 PF03573 outer membrane porin, OprD family AL539_RS16585 PF01145 SPFH domain / Band 7 family AL539_RS16585 PF16200 C-terminal region of band_7 AL539_RS16590 PF00085 Thioredoxin AL539_RS16600 PF00106 short chain dehydrogenase AL539_RS16605 PF08338 Domain of unknown function (DUF1731) AL539_RS16605 PF01370 NAD dependent epimerase/dehydratase family AL539_RS16610 PF07556 Protein of unknown function (DUF1538) AL539_RS16615 PF07556 Protein of unknown function (DUF1538) AL539_RS16635 PF12850 Calcineurin-like phosphoesterase superfamily domain AL539_RS16650 PF17323 Trans-membrane regulatory protein ToxS AL539_RS16655 PF00486 Transcriptional regulatory protein, C terminal AL539_RS16660 PF00183 Hsp90 protein AL539_RS16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS16665 PF05191 Adenylate kinase, active site lid AL539_RS16670 PF00762 Ferrochelatase AL539_RS16675 PF00854 POT family AL539_RS16680 PF02357 Transcription termination factor nusG AL539_RS16685 PF13537 Glutamine amidotransferase domain AL539_RS16685 PF00733 Asparagine synthase AL539_RS16690 PF00999 Sodium/hydrogen exchanger family AL539_RS16690 PF02254 TrkA-N domain AL539_RS16695 PF01047 MarR family AL539_RS16695 PF00480 ROK family AL539_RS16700 PF01979 Amidohydrolase family AL539_RS16710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL539_RS16710 PF00367 phosphotransferase system, EIIB AL539_RS16710 PF02378 Phosphotransferase system, EIIC AL539_RS16715 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL539_RS16715 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL539_RS16720 PF01475 Ferric uptake regulator family AL539_RS16730 PF00258 Flavodoxin AL539_RS16740 PF12697 Alpha/beta hydrolase family AL539_RS16745 PF03925 SeqA protein C-terminal domain AL539_RS16745 PF17206 SeqA protein N-terminal domain AL539_RS16750 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_RS16750 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_RS16750 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_RS16750 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_RS16760 PF01784 NIF3 (NGG1p interacting factor 3) AL539_RS16765 PF00285 Citrate synthase, C-terminal domain AL539_RS16770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL539_RS16775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL539_RS16780 PF02910 Fumarate reductase flavoprotein C-term AL539_RS16780 PF00890 FAD binding domain AL539_RS16785 PF13085 2Fe-2S iron-sulfur cluster binding domain AL539_RS16790 PF16078 2-oxoglutarate dehydrogenase N-terminus AL539_RS16790 PF00676 Dehydrogenase E1 component AL539_RS16790 PF16870 2-oxoglutarate dehydrogenase C-terminal AL539_RS16790 PF02779 Transketolase, pyrimidine binding domain AL539_RS16795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL539_RS16795 PF00364 Biotin-requiring enzyme AL539_RS16795 PF02817 e3 binding domain AL539_RS16800 PF00549 CoA-ligase AL539_RS16800 PF08442 ATP-grasp domain AL539_RS16805 PF00549 CoA-ligase AL539_RS16805 PF02629 CoA binding domain AL539_RS16810 PF00950 ABC 3 transport family AL539_RS16815 PF00005 ABC transporter AL539_RS16820 PF01297 Zinc-uptake complex component A periplasmic AL539_RS16825 PF12833 Helix-turn-helix domain AL539_RS16830 PF04023 FeoA domain AL539_RS16835 PF17910 FeoB cytosolic helical domain AL539_RS16835 PF07664 Ferrous iron transport protein B C terminus AL539_RS16835 PF07670 Nucleoside recognition AL539_RS16835 PF02421 Ferrous iron transport protein B AL539_RS16855 PF00750 tRNA synthetases class I (R) AL539_RS16855 PF03485 Arginyl tRNA synthetase N terminal domain AL539_RS16855 PF05746 DALR anticodon binding domain AL539_RS16865 PF06185 YecM protein AL539_RS16870 PF00551 Formyl transferase AL539_RS16870 PF01842 ACT domain AL539_RS16875 PF13307 Helicase C-terminal domain AL539_RS16875 PF04851 Type III restriction enzyme, res subunit AL539_RS16880 PF00814 Glycoprotease family AL539_RS16895 PF00561 alpha/beta hydrolase fold AL539_RS16900 PF13193 AMP-binding enzyme C-terminal domain AL539_RS16900 PF00501 AMP-binding enzyme AL539_RS16905 PF00570 HRDC domain AL539_RS16905 PF01612 3'-5' exonuclease AL539_RS16910 PF03776 Septum formation topological specificity factor MinE AL539_RS16915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL539_RS16920 PF03775 Septum formation inhibitor MinC, C-terminal domain AL539_RS16920 PF05209 Septum formation inhibitor MinC, N-terminal domain AL539_RS16925 PF05166 YcgL domain AL539_RS16930 PF13406 Transglycosylase SLT domain AL539_RS16935 PF03466 LysR substrate binding domain AL539_RS16935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS16940 PF01773 Na+ dependent nucleoside transporter N-terminus AL539_RS16940 PF07662 Na+ dependent nucleoside transporter C-terminus AL539_RS16940 PF07670 Nucleoside recognition AL539_RS16945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL539_RS16945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL539_RS16955 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_RS16955 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_RS16965 PF07977 FabA-like domain AL539_RS16970 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_RS16970 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_RS16995 PF00221 Aromatic amino acid lyase AL539_RS17000 PF00535 Glycosyl transferase family 2 AL539_RS17005 PF07977 FabA-like domain AL539_RS17020 PF00550 Phosphopantetheine attachment site AL539_RS17025 PF00550 Phosphopantetheine attachment site AL539_RS17050 PF04820 Tryptophan halogenase AL539_RS17060 PF00271 Helicase conserved C-terminal domain AL539_RS17060 PF00270 DEAD/DEAH box helicase AL539_RS17065 PF02080 TrkA-C domain AL539_RS17065 PF02254 TrkA-N domain AL539_RS17070 PF02386 Cation transport protein AL539_RS17085 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL539_RS17090 PF03480 Bacterial extracellular solute-binding protein, family 7 AL539_RS17095 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL539_RS17100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL539_RS17110 PF02954 Bacterial regulatory protein, Fis family AL539_RS17110 PF00072 Response regulator receiver domain AL539_RS17110 PF00158 Sigma-54 interaction domain AL539_RS17115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS17115 PF02743 Cache domain AL539_RS17115 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS17125 PF05697 Bacterial trigger factor protein (TF) AL539_RS17125 PF05698 Bacterial trigger factor protein (TF) C-terminus AL539_RS17125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_RS17130 PF00574 Clp protease AL539_RS17135 PF07724 AAA domain (Cdc48 subfamily) AL539_RS17135 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_RS17135 PF06689 ClpX C4-type zinc finger AL539_RS17140 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL539_RS17140 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS17140 PF05362 Lon protease (S16) C-terminal proteolytic domain AL539_RS17145 PF00216 Bacterial DNA-binding protein AL539_RS17150 PF13145 PPIC-type PPIASE domain AL539_RS17170 PF13286 Phosphohydrolase-associated domain AL539_RS17170 PF01966 HD domain AL539_RS17180 PF00155 Aminotransferase class I and II AL539_RS17185 PF00425 chorismate binding enzyme AL539_RS17190 PF16582 Middle domain of thiamine pyrophosphate AL539_RS17190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_RS17190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_RS17195 PF12697 Alpha/beta hydrolase family AL539_RS17200 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS17205 PF13378 Enolase C-terminal domain-like AL539_RS17210 PF13193 AMP-binding enzyme C-terminal domain AL539_RS17210 PF00501 AMP-binding enzyme AL539_RS17220 PF03601 Conserved hypothetical protein 698 AL539_RS17225 PF07690 Major Facilitator Superfamily AL539_RS17275 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS17275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS17280 PF00873 AcrB/AcrD/AcrF family AL539_RS17295 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS17300 PF13404 AsnC-type helix-turn-helix domain AL539_RS17300 PF01037 Lrp/AsnC ligand binding domain AL539_RS17315 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL539_RS17320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL539_RS17330 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS17340 PF00588 SpoU rRNA Methylase family AL539_RS17340 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL539_RS17345 PF00478 IMP dehydrogenase / GMP reductase domain AL539_RS17345 PF00571 CBS domain AL539_RS17350 PF00403 Heavy-metal-associated domain AL539_RS17355 PF01048 Phosphorylase superfamily AL539_RS17365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS17365 PF00672 HAMP domain AL539_RS17370 PF01230 HIT domain AL539_RS17385 PF13036 Peptidoglycan-synthase activator LpoB AL539_RS17385 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL539_RS17390 PF01636 Phosphotransferase enzyme family AL539_RS17395 PF05728 Uncharacterised protein family (UPF0227) AL539_RS17400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS17415 PF02559 CarD-like/TRCF domain AL539_RS17415 PF03461 TRCF domain AL539_RS17415 PF17757 UvrB interaction domain AL539_RS17415 PF00271 Helicase conserved C-terminal domain AL539_RS17415 PF00270 DEAD/DEAH box helicase AL539_RS17425 PF02687 FtsX-like permease family AL539_RS17425 PF12704 MacB-like periplasmic core domain AL539_RS17430 PF00005 ABC transporter AL539_RS17435 PF12704 MacB-like periplasmic core domain AL539_RS17435 PF02687 FtsX-like permease family AL539_RS17445 PF00753 Metallo-beta-lactamase superfamily AL539_RS17445 PF13567 Domain of unknown function (DUF4131) AL539_RS17445 PF03772 Competence protein AL539_RS17450 PF00005 ABC transporter AL539_RS17450 PF00664 ABC transporter transmembrane region AL539_RS17455 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL539_RS17460 PF03966 Trm112p-like protein AL539_RS17465 PF02348 Cytidylyltransferase AL539_RS17470 PF04293 SpoVR like protein AL539_RS17475 PF04285 Protein of unknown function (DUF444) AL539_RS17480 PF08298 PrkA AAA domain AL539_RS17480 PF06798 PrkA serine protein kinase C-terminal domain AL539_RS17490 PF03887 YfbU domain AL539_RS17500 PF04055 Radical SAM superfamily AL539_RS17510 PF01228 Glycine radical AL539_RS17510 PF02901 Pyruvate formate lyase-like AL539_RS17530 PF00005 ABC transporter AL539_RS17535 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS17540 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS17545 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS17555 PF03372 Endonuclease/Exonuclease/phosphatase family AL539_RS17560 PF10689 Protein of unknown function (DUF2496) AL539_RS17565 PF07445 Primosomal replication protein priC AL539_RS17570 PF01925 Sulfite exporter TauE/SafE AL539_RS17575 PF06733 DEAD_2 AL539_RS17575 PF13307 Helicase C-terminal domain AL539_RS17585 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL539_RS17590 PF00849 RNA pseudouridylate synthase AL539_RS17595 PF03971 Monomeric isocitrate dehydrogenase AL539_RS17600 PF00313 'Cold-shock' DNA-binding domain AL539_RS17605 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL539_RS17610 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS17610 PF07724 AAA domain (Cdc48 subfamily) AL539_RS17610 PF17871 AAA lid domain AL539_RS17610 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_RS17610 PF02861 Clp amino terminal domain, pathogenicity island component AL539_RS17615 PF01176 Translation initiation factor 1A / IF-1 AL539_RS17620 PF04376 Arginine-tRNA-protein transferase, N terminus AL539_RS17620 PF04377 Arginine-tRNA-protein transferase, C terminus AL539_RS17625 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL539_RS17635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL539_RS17640 PF10692 Protein of unknown function (DUF2498) AL539_RS17645 PF08272 Topoisomerase I zinc-ribbon-like AL539_RS17645 PF01131 DNA topoisomerase AL539_RS17645 PF01751 Toprim domain AL539_RS17645 PF01396 Topoisomerase DNA binding C4 zinc finger AL539_RS17650 PF00483 Nucleotidyl transferase AL539_RS17655 PF00534 Glycosyl transferases group 1 AL539_RS17655 PF08323 Starch synthase catalytic domain AL539_RS17675 PF04994 TfoX C-terminal domain AL539_RS17675 PF04993 TfoX N-terminal domain AL539_RS17680 PF00356 Bacterial regulatory proteins, lacI family AL539_RS17685 PF02613 Nitrate reductase delta subunit AL539_RS17690 PF00072 Response regulator receiver domain AL539_RS17690 PF00486 Transcriptional regulatory protein, C terminal AL539_RS17695 PF02698 DUF218 domain AL539_RS17700 PF13847 Methyltransferase domain AL539_RS17705 PF03882 MukF winged-helix domain AL539_RS17705 PF17192 MukF middle domain AL539_RS17705 PF17193 MukF C-terminal domain AL539_RS17710 PF04288 MukE-like family AL539_RS17715 PF04310 MukB N-terminal AL539_RS17715 PF16330 MukB hinge domain AL539_RS17735 PF18030 RimK PreATP-grasp domain AL539_RS17735 PF08443 RimK-like ATP-grasp domain AL539_RS17745 PF08003 Protein of unknown function (DUF1698) AL539_RS17750 PF13649 Methyltransferase domain AL539_RS17755 PF01904 Protein of unknown function DUF72 AL539_RS17760 PF02938 GAD domain AL539_RS17760 PF01336 OB-fold nucleic acid binding domain AL539_RS17760 PF00152 tRNA synthetases class II (D, K and N) AL539_RS17765 PF01709 Transcriptional regulator AL539_RS17770 PF02075 Crossover junction endodeoxyribonuclease RuvC AL539_RS17775 PF01330 RuvA N terminal domain AL539_RS17775 PF07499 RuvA, C-terminal domain AL539_RS17780 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL539_RS17780 PF17864 RuvB AAA lid domain AL539_RS17780 PF05491 RuvB C-terminal winged helix domain AL539_RS17785 PF01654 Cytochrome bd terminal oxidase subunit I AL539_RS17790 PF02322 Cytochrome bd terminal oxidase subunit II AL539_RS17795 PF08173 Membrane bound YbgT-like protein AL539_RS17805 PF03061 Thioesterase superfamily AL539_RS17810 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS17815 PF02472 Biopolymer transport protein ExbD/TolR AL539_RS17825 PF04052 TolB amino-terminal domain AL539_RS17825 PF07676 WD40-like Beta Propeller Repeat AL539_RS17830 PF00691 OmpA family AL539_RS17835 PF13174 Tetratricopeptide repeat AL539_RS17835 PF16331 TolA binding protein trimerisation AL539_RS17840 PF02445 Quinolinate synthetase A protein AL539_RS17850 PF03994 Domain of Unknown Function (DUF350) AL539_RS17860 PF03738 Glutathionylspermidine synthase preATP-grasp AL539_RS17870 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL539_RS17875 PF00691 OmpA family AL539_RS17875 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL539_RS17880 PF06744 Type VI secretion protein IcmF C-terminal AL539_RS17880 PF06761 Intracellular multiplication and human macrophage-killing AL539_RS17880 PF14331 ImcF-related N-terminal domain AL539_RS17900 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AL539_RS17905 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL539_RS17910 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL539_RS17925 PF05947 Type VI secretion system, TssF AL539_RS17935 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_RS17935 PF17871 AAA lid domain AL539_RS17935 PF07724 AAA domain (Cdc48 subfamily) AL539_RS17935 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS17945 PF04717 Type VI secretion system, phage-baseplate injector AL539_RS17945 PF06715 Gp5 C-terminal repeat (3 copies) AL539_RS17960 PF12320 Type 5 capsule protein repressor C-terminal domain AL539_RS17960 PF00149 Calcineurin-like phosphoesterase AL539_RS17965 PF13476 AAA domain AL539_RS17975 PF08212 Lipocalin-like domain AL539_RS17985 PF03606 C4-dicarboxylate anaerobic carrier AL539_RS17995 PF01212 Beta-eliminating lyase AL539_RS18005 PF07728 AAA domain (dynein-related subfamily) AL539_RS18005 PF17868 AAA lid domain AL539_RS18005 PF12592 Protein of unknown function (DUF3763) AL539_RS18010 PF05762 VWA domain containing CoxE-like protein AL539_RS18025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS18025 PF03466 LysR substrate binding domain AL539_RS18030 PF01565 FAD binding domain AL539_RS18030 PF09330 D-lactate dehydrogenase, membrane binding AL539_RS18045 PF01168 Alanine racemase, N-terminal domain AL539_RS18045 PF00842 Alanine racemase, C-terminal domain AL539_RS18050 PF00672 HAMP domain AL539_RS18050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS18065 PF09154 Domain of unknown function (DUF1939) AL539_RS18065 PF00128 Alpha amylase, catalytic domain AL539_RS18100 PF00296 Luciferase-like monooxygenase AL539_RS18105 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18105 PF03707 Bacterial signalling protein N terminal repeat AL539_RS18105 PF00563 EAL domain AL539_RS18115 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18115 PF00563 EAL domain AL539_RS18115 PF03707 Bacterial signalling protein N terminal repeat AL539_RS18125 PF14760 Rnk N-terminus AL539_RS18125 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_RS18130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL539_RS18130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS18130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL539_RS18130 PF04324 BFD-like [2Fe-2S] binding domain AL539_RS18130 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL539_RS18135 PF13806 Rieske-like [2Fe-2S] domain AL539_RS18140 PF01226 Formate/nitrite transporter AL539_RS18145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_RS18145 PF10414 Sirohaem synthase dimerisation region AL539_RS18145 PF14824 Sirohaem biosynthesis protein central AL539_RS18160 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL539_RS18175 PF07715 TonB-dependent Receptor Plug Domain AL539_RS18175 PF00593 TonB dependent receptor AL539_RS18185 PF13302 Acetyltransferase (GNAT) domain AL539_RS18190 PF11756 Nitrous oxide-stimulated promoter AL539_RS18195 PF07690 Major Facilitator Superfamily AL539_RS18200 PF00085 Thioredoxin AL539_RS18205 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL539_RS18205 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL539_RS18225 PF01238 Phosphomannose isomerase type I AL539_RS18230 PF07690 Major Facilitator Superfamily AL539_RS18235 PF05231 MASE1 AL539_RS18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS18235 PF07730 Histidine kinase AL539_RS18240 PF00072 Response regulator receiver domain AL539_RS18240 PF00196 Bacterial regulatory proteins, luxR family AL539_RS18245 PF07690 Major Facilitator Superfamily AL539_RS18250 PF02634 FdhD/NarQ family AL539_RS18255 PF03466 LysR substrate binding domain AL539_RS18255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS18265 PF00384 Molybdopterin oxidoreductase AL539_RS18280 PF02567 Phenazine biosynthesis-like protein AL539_RS18285 PF01177 Asp/Glu/Hydantoin racemase AL539_RS18290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_RS18290 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS18300 PF04143 Sulphur transport AL539_RS18320 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL539_RS18320 PF03477 ATP cone domain AL539_RS18330 PF01554 MatE AL539_RS18335 PF12852 Cupin AL539_RS18335 PF12833 Helix-turn-helix domain AL539_RS18340 PF00155 Aminotransferase class I and II AL539_RS18345 PF08443 RimK-like ATP-grasp domain AL539_RS18345 PF18030 RimK PreATP-grasp domain AL539_RS18355 PF04076 Bacterial OB fold (BOF) protein AL539_RS18360 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL539_RS18360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL539_RS18370 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS18375 PF00005 ABC transporter AL539_RS18375 PF03459 TOBE domain AL539_RS18385 PF01590 GAF domain AL539_RS18385 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18385 PF00360 Phytochrome region AL539_RS18385 PF00563 EAL domain AL539_RS18390 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18420 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL539_RS18420 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL539_RS18420 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL539_RS18425 PF02233 NAD(P) transhydrogenase beta subunit AL539_RS18435 PF00072 Response regulator receiver domain AL539_RS18435 PF00486 Transcriptional regulatory protein, C terminal AL539_RS18450 PF03701 Uncharacterised protein family (UPF0181) AL539_RS18455 PF00582 Universal stress protein family AL539_RS18465 PF03466 LysR substrate binding domain AL539_RS18465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS18485 PF01253 Translation initiation factor SUI1 AL539_RS18495 PF01820 D-ala D-ala ligase N-terminus AL539_RS18495 PF07478 D-ala D-ala ligase C-terminus AL539_RS18500 PF05036 Sporulation related domain AL539_RS18505 PF00583 Acetyltransferase (GNAT) family AL539_RS18505 PF13380 CoA binding domain AL539_RS18505 PF13607 Succinyl-CoA ligase like flavodoxin domain AL539_RS18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS18510 PF03466 LysR substrate binding domain AL539_RS18515 PF07715 TonB-dependent Receptor Plug Domain AL539_RS18515 PF04886 PT repeat AL539_RS18515 PF00593 TonB dependent receptor AL539_RS18525 PF16363 GDP-mannose 4,6 dehydratase AL539_RS18530 PF05231 MASE1 AL539_RS18530 PF00563 EAL domain AL539_RS18530 PF08448 PAS fold AL539_RS18530 PF08447 PAS fold AL539_RS18530 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18530 PF13426 PAS domain AL539_RS18535 PF03746 LamB/YcsF family AL539_RS18540 PF02682 Carboxyltransferase domain, subdomain C and D AL539_RS18545 PF02626 Carboxyltransferase domain, subdomain A and B AL539_RS18560 PF00005 ABC transporter AL539_RS18565 PF13472 GDSL-like Lipase/Acylhydrolase family AL539_RS18570 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL539_RS18570 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL539_RS18570 PF07055 Enoyl reductase FAD binding domain AL539_RS18575 PF00563 EAL domain AL539_RS18575 PF03707 Bacterial signalling protein N terminal repeat AL539_RS18575 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18575 PF13188 PAS domain AL539_RS18585 PF00226 DnaJ domain AL539_RS18585 PF01556 DnaJ C terminal domain AL539_RS18585 PF00684 DnaJ central domain AL539_RS18610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS18610 PF12793 Sugar transport-related sRNA regulator N-term AL539_RS18620 PF03061 Thioesterase superfamily AL539_RS18635 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_RS18640 PF12262 Bacterial virulence factor lipase N-terminal AL539_RS18660 PF03741 Integral membrane protein TerC family AL539_RS18665 PF00149 Calcineurin-like phosphoesterase AL539_RS18665 PF02872 5'-nucleotidase, C-terminal domain AL539_RS18670 PF11398 Protein of unknown function (DUF2813) AL539_RS18675 PF06496 Protein of unknown function (DUF1097) AL539_RS18680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS18680 PF03466 LysR substrate binding domain AL539_RS18685 PF01226 Formate/nitrite transporter AL539_RS18690 PF04264 YceI-like domain AL539_RS18695 PF01292 Prokaryotic cytochrome b561 AL539_RS18715 PF00271 Helicase conserved C-terminal domain AL539_RS18715 PF00270 DEAD/DEAH box helicase AL539_RS18720 PF04336 Acyl carrier protein phosphodiesterase AL539_RS18730 PF00672 HAMP domain AL539_RS18730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS18730 PF12729 Four helix bundle sensory module for signal transduction AL539_RS18740 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS18755 PF00294 pfkB family carbohydrate kinase AL539_RS18760 PF01268 Formate--tetrahydrofolate ligase AL539_RS18765 PF00483 Nucleotidyl transferase AL539_RS18770 PF00704 Glycosyl hydrolases family 18 AL539_RS18770 PF06483 Chitinase C AL539_RS18780 PF06719 AraC-type transcriptional regulator N-terminus AL539_RS18780 PF12833 Helix-turn-helix domain AL539_RS18785 PF00465 Iron-containing alcohol dehydrogenase AL539_RS18795 PF00005 ABC transporter AL539_RS18800 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS18805 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS18810 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS18815 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS18815 PF00989 PAS fold AL539_RS18815 PF00563 EAL domain AL539_RS18815 PF01590 GAF domain AL539_RS18830 PF00356 Bacterial regulatory proteins, lacI family AL539_RS18830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL539_RS18835 PF00381 PTS HPr component phosphorylation site AL539_RS18835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_RS18840 PF00294 pfkB family carbohydrate kinase AL539_RS18845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_RS18845 PF02378 Phosphotransferase system, EIIC AL539_RS18855 PF00873 AcrB/AcrD/AcrF family AL539_RS18875 PF01571 Aminomethyltransferase folate-binding domain AL539_RS18875 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL539_RS18885 PF00464 Serine hydroxymethyltransferase AL539_RS18890 PF01597 Glycine cleavage H-protein AL539_RS18895 PF02347 Glycine cleavage system P-protein AL539_RS18900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS18910 PF00753 Metallo-beta-lactamase superfamily AL539_RS18910 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL539_RS18915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS18915 PF03466 LysR substrate binding domain AL539_RS18920 PF00892 EamA-like transporter family AL539_RS18925 PF02627 Carboxymuconolactone decarboxylase family AL539_RS18930 PF12833 Helix-turn-helix domain AL539_RS18955 PF00929 Exonuclease AL539_RS18955 PF02811 PHP domain AL539_RS18955 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL539_RS18955 PF14579 Helix-hairpin-helix motif AL539_RS18955 PF11490 DNA polymerase III polC-type N-terminus II AL539_RS18955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL539_RS18965 PF00664 ABC transporter transmembrane region AL539_RS18965 PF00005 ABC transporter AL539_RS18985 PF02253 Phospholipase A1 AL539_RS19000 PF00376 MerR family regulatory protein AL539_RS19000 PF09278 MerR, DNA binding AL539_RS19005 PF01327 Polypeptide deformylase AL539_RS19040 PF00571 CBS domain AL539_RS19040 PF03448 MgtE intracellular N domain AL539_RS19040 PF01769 Divalent cation transporter AL539_RS19060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS19065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_RS19075 PF01757 Acyltransferase family AL539_RS19085 PF09722 Protein of unknown function (DUF2384) AL539_RS19090 PF00141 Peroxidase AL539_RS19095 PF13187 4Fe-4S dicluster domain AL539_RS19095 PF01645 Conserved region in glutamate synthase AL539_RS19105 PF00171 Aldehyde dehydrogenase family AL539_RS19120 PF00892 EamA-like transporter family AL539_RS19125 PF00893 Small Multidrug Resistance protein AL539_RS19145 PF00892 EamA-like transporter family AL539_RS19155 PF08334 Type II secretion system (T2SS), protein G AL539_RS19155 PF07963 Prokaryotic N-terminal methylation motif AL539_RS19160 PF01584 CheW-like domain AL539_RS19160 PF00072 Response regulator receiver domain AL539_RS19170 PF00072 Response regulator receiver domain AL539_RS19170 PF00486 Transcriptional regulatory protein, C terminal AL539_RS19180 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS19185 PF00196 Bacterial regulatory proteins, luxR family AL539_RS19185 PF00072 Response regulator receiver domain AL539_RS19190 PF03707 Bacterial signalling protein N terminal repeat AL539_RS19190 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS19190 PF13188 PAS domain AL539_RS19190 PF00563 EAL domain AL539_RS19195 PF00072 Response regulator receiver domain AL539_RS19195 PF09456 RcsC Alpha-Beta-Loop (ABL) AL539_RS19195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS19195 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS19200 PF01926 50S ribosome-binding GTPase AL539_RS19205 PF00155 Aminotransferase class I and II AL539_RS19210 PF00072 Response regulator receiver domain AL539_RS19210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS19220 PF00583 Acetyltransferase (GNAT) family AL539_RS19220 PF00814 Glycoprotease family AL539_RS19230 PF03606 C4-dicarboxylate anaerobic carrier AL539_RS19245 PF18081 Fanconi anemia-associated nuclease SAP domain AL539_RS19245 PF08774 VRR-NUC domain AL539_RS19255 PF04076 Bacterial OB fold (BOF) protein AL539_RS19260 PF00781 Diacylglycerol kinase catalytic domain AL539_RS19265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS19265 PF03466 LysR substrate binding domain AL539_RS19270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_RS19285 PF00092 von Willebrand factor type A domain AL539_RS19300 PF07726 ATPase family associated with various cellular activities (AAA) AL539_RS19300 PF17863 AAA lid domain AL539_RS19305 PF13186 Iron-sulfur cluster-binding domain AL539_RS19305 PF04055 Radical SAM superfamily AL539_RS19310 PF16385 Domain of unknown function AL539_RS19310 PF00884 Sulfatase AL539_RS19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS19315 PF03466 LysR substrate binding domain AL539_RS19320 PF00884 Sulfatase AL539_RS19325 PF00072 Response regulator receiver domain AL539_RS19325 PF00486 Transcriptional regulatory protein, C terminal AL539_RS19340 PF01627 Hpt domain AL539_RS19340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS19340 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS19340 PF00072 Response regulator receiver domain AL539_RS19340 PF00672 HAMP domain AL539_RS19345 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL539_RS19350 PF02142 MGS-like domain AL539_RS19355 PF13361 UvrD-like helicase C-terminal domain AL539_RS19355 PF00580 UvrD/REP helicase N-terminal domain AL539_RS19355 PF12462 DNA helicase IV / RNA helicase N terminal AL539_RS19360 PF12805 FUSC-like inner membrane protein yccS AL539_RS19395 PF00593 TonB dependent receptor AL539_RS19395 PF07715 TonB-dependent Receptor Plug Domain AL539_RS19405 PF13411 MerR HTH family regulatory protein AL539_RS19410 PF00005 ABC transporter AL539_RS19415 PF01032 FecCD transport family AL539_RS19420 PF01032 FecCD transport family AL539_RS19425 PF01497 Periplasmic binding protein AL539_RS19435 PF01048 Phosphorylase superfamily AL539_RS19440 PF04973 Nicotinamide mononucleotide transporter AL539_RS19450 PF00356 Bacterial regulatory proteins, lacI family AL539_RS19455 PF00294 pfkB family carbohydrate kinase AL539_RS19460 PF13407 Periplasmic binding protein domain AL539_RS19465 PF02653 Branched-chain amino acid transport system / permease component AL539_RS19470 PF00005 ABC transporter AL539_RS19475 PF05025 RbsD / FucU transport protein family AL539_RS19480 PF00563 EAL domain AL539_RS19480 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS19525 PF04116 Fatty acid hydroxylase superfamily AL539_RS19535 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL539_RS19535 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL539_RS19545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS19545 PF00072 Response regulator receiver domain AL539_RS19545 PF09308 LuxQ, periplasmic AL539_RS19545 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS19550 PF00034 Cytochrome c AL539_RS19550 PF03150 Di-haem cytochrome c peroxidase AL539_RS19560 PF01145 SPFH domain / Band 7 family AL539_RS19560 PF16200 C-terminal region of band_7 AL539_RS19570 PF00881 Nitroreductase family AL539_RS19575 PF00005 ABC transporter AL539_RS19575 PF00571 CBS domain AL539_RS19580 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS19585 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL539_RS19590 PF05199 GMC oxidoreductase AL539_RS19590 PF00732 GMC oxidoreductase AL539_RS19595 PF00171 Aldehyde dehydrogenase family AL539_RS19600 PF00440 Bacterial regulatory proteins, tetR family AL539_RS19600 PF13977 BetI-type transcriptional repressor, C-terminal AL539_RS19605 PF00072 Response regulator receiver domain AL539_RS19605 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS19615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_RS19615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_RS19625 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS19630 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_RS19630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_RS19630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_RS19635 PF00171 Aldehyde dehydrogenase family AL539_RS19640 PF02803 Thiolase, C-terminal domain AL539_RS19640 PF00108 Thiolase, N-terminal domain AL539_RS19645 PF00376 MerR family regulatory protein AL539_RS19645 PF09278 MerR, DNA binding AL539_RS19650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_RS19650 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_RS19650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_RS19655 PF01039 Carboxyl transferase domain AL539_RS19660 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS19665 PF18140 Propionyl-coenzyme A carboxylase BT domain AL539_RS19665 PF00289 Biotin carboxylase, N-terminal domain AL539_RS19665 PF02785 Biotin carboxylase C-terminal domain AL539_RS19665 PF00364 Biotin-requiring enzyme AL539_RS19665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL539_RS19670 PF00682 HMGL-like AL539_RS19680 PF00924 Mechanosensitive ion channel AL539_RS19680 PF12795 Mechanosensitive ion channel porin domain AL539_RS19680 PF12794 Mechanosensitive ion channel inner membrane domain 1 AL539_RS19690 PF14602 Hexapeptide repeat of succinyl-transferase AL539_RS19690 PF12464 Maltose acetyltransferase AL539_RS19695 PF00392 Bacterial regulatory proteins, gntR family AL539_RS19695 PF00155 Aminotransferase class I and II AL539_RS19700 PF01654 Cytochrome bd terminal oxidase subunit I AL539_RS19705 PF02322 Cytochrome bd terminal oxidase subunit II AL539_RS19720 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS19725 PF03466 LysR substrate binding domain AL539_RS19725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS19730 PF03306 Alpha-acetolactate decarboxylase AL539_RS19735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_RS19735 PF00205 Thiamine pyrophosphate enzyme, central domain AL539_RS19735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_RS19745 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS19775 PF05724 Thiopurine S-methyltransferase (TPMT) AL539_RS19780 PF00501 AMP-binding enzyme AL539_RS19780 PF14535 AMP-binding enzyme C-terminal domain AL539_RS19785 PF00005 ABC transporter AL539_RS19805 PF00501 AMP-binding enzyme AL539_RS19810 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL539_RS19810 PF00005 ABC transporter AL539_RS19825 PF01012 Electron transfer flavoprotein domain AL539_RS19830 PF00766 Electron transfer flavoprotein FAD-binding domain AL539_RS19830 PF01012 Electron transfer flavoprotein domain AL539_RS19835 PF00501 AMP-binding enzyme AL539_RS19835 PF13193 AMP-binding enzyme C-terminal domain AL539_RS19840 PF02378 Phosphotransferase system, EIIC AL539_RS19840 PF00367 phosphotransferase system, EIIB AL539_RS19845 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL539_RS19845 PF02056 Family 4 glycosyl hydrolase AL539_RS19850 PF00392 Bacterial regulatory proteins, gntR family AL539_RS19850 PF07702 UTRA domain AL539_RS19855 PF03334 Na+/H+ antiporter subunit AL539_RS19860 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL539_RS19865 PF01899 Na+/H+ ion antiporter subunit AL539_RS19870 PF00361 Proton-conducting membrane transporter AL539_RS19875 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AL539_RS19880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL539_RS19880 PF00361 Proton-conducting membrane transporter AL539_RS19880 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL539_RS19880 PF13244 Domain of unknown function (DUF4040) AL539_RS19890 PF00582 Universal stress protein family AL539_RS19895 PF00106 short chain dehydrogenase AL539_RS19900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS19900 PF03466 LysR substrate binding domain AL539_RS19910 PF07690 Major Facilitator Superfamily AL539_RS19920 PF00182 Chitinase class I AL539_RS19935 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL539_RS19965 PF01037 Lrp/AsnC ligand binding domain AL539_RS19975 PF05947 Type VI secretion system, TssF AL539_RS19985 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL539_RS20000 PF00069 Protein kinase domain AL539_RS20025 PF04717 Type VI secretion system, phage-baseplate injector AL539_RS20030 PF05638 Type VI secretion system effector, Hcp AL539_RS20035 PF00004 ATPase family associated with various cellular activities (AAA) AL539_RS20035 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_RS20035 PF17871 AAA lid domain AL539_RS20035 PF07724 AAA domain (Cdc48 subfamily) AL539_RS20040 PF00158 Sigma-54 interaction domain AL539_RS20040 PF02954 Bacterial regulatory protein, Fis family AL539_RS20040 PF00072 Response regulator receiver domain AL539_RS20065 PF01476 LysM domain AL539_RS20065 PF08525 Opacity-associated protein A N-terminal motif AL539_RS20065 PF01551 Peptidase family M23 AL539_RS20095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_RS20105 PF12833 Helix-turn-helix domain AL539_RS20110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_RS20110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_RS20115 PF01238 Phosphomannose isomerase type I AL539_RS20130 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_RS20130 PF07971 Glycosyl hydrolase family 92 AL539_RS20135 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_RS20135 PF07971 Glycosyl hydrolase family 92 AL539_RS20145 PF07971 Glycosyl hydrolase family 92 AL539_RS20145 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_RS20150 PF07971 Glycosyl hydrolase family 92 AL539_RS20150 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_RS20175 PF00478 IMP dehydrogenase / GMP reductase domain AL539_RS20180 PF01256 Carbohydrate kinase AL539_RS20180 PF03853 YjeF-related protein N-terminus AL539_RS20190 PF00072 Response regulator receiver domain AL539_RS20195 PF00248 Aldo/keto reductase family AL539_RS20210 PF00654 Voltage gated chloride channel AL539_RS20220 PF01227 GTP cyclohydrolase I AL539_RS20225 PF00994 Probable molybdopterin binding domain AL539_RS20225 PF03454 MoeA C-terminal region (domain IV) AL539_RS20225 PF03453 MoeA N-terminal region (domain I and II) AL539_RS20230 PF00899 ThiF family AL539_RS20245 PF00581 Rhodanese-like domain AL539_RS20265 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL539_RS20270 PF02779 Transketolase, pyrimidine binding domain AL539_RS20270 PF00456 Transketolase, thiamine diphosphate binding domain AL539_RS20270 PF02780 Transketolase, C-terminal domain AL539_RS20275 PF00672 HAMP domain AL539_RS20275 PF12729 Four helix bundle sensory module for signal transduction AL539_RS20275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS20280 PF07690 Major Facilitator Superfamily AL539_RS20285 PF00793 DAHP synthetase I family AL539_RS20295 PF00691 OmpA family AL539_RS20295 PF01389 OmpA-like transmembrane domain AL539_RS20300 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS20305 PF00472 RF-1 domain AL539_RS20310 PF00672 HAMP domain AL539_RS20310 PF12729 Four helix bundle sensory module for signal transduction AL539_RS20310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS20315 PF00873 AcrB/AcrD/AcrF family AL539_RS20320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS20325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_RS20330 PF01546 Peptidase family M20/M25/M40 AL539_RS20330 PF07687 Peptidase dimerisation domain AL539_RS20345 PF00072 Response regulator receiver domain AL539_RS20345 PF00196 Bacterial regulatory proteins, luxR family AL539_RS20350 PF00672 HAMP domain AL539_RS20350 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL539_RS20350 PF07730 Histidine kinase AL539_RS20350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS20355 PF12838 4Fe-4S dicluster domain AL539_RS20355 PF13187 4Fe-4S dicluster domain AL539_RS20365 PF01568 Molydopterin dinucleotide binding domain AL539_RS20365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS20365 PF00384 Molybdopterin oxidoreductase AL539_RS20370 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL539_RS20375 PF03264 NapC/NirT cytochrome c family, N-terminal region AL539_RS20385 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL539_RS20395 PF00108 Thiolase, N-terminal domain AL539_RS20395 PF02803 Thiolase, C-terminal domain AL539_RS20400 PF00106 short chain dehydrogenase AL539_RS20405 PF01810 LysE type translocator AL539_RS20415 PF07549 SecD/SecF GG Motif AL539_RS20415 PF02355 Protein export membrane protein AL539_RS20420 PF02355 Protein export membrane protein AL539_RS20420 PF13721 SecD export protein N-terminal TM region AL539_RS20420 PF07549 SecD/SecF GG Motif AL539_RS20450 PF01037 Lrp/AsnC ligand binding domain AL539_RS20470 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS20470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS20475 PF01047 MarR family AL539_RS20480 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS20480 PF09308 LuxQ, periplasmic AL539_RS20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS20480 PF00072 Response regulator receiver domain AL539_RS20485 PF13407 Periplasmic binding protein domain AL539_RS20495 PF01541 GIY-YIG catalytic domain AL539_RS20500 PF04337 Protein of unknown function, DUF480 AL539_RS20510 PF04363 Protein of unknown function (DUF496) AL539_RS20515 PF01554 MatE AL539_RS20520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL539_RS20520 PF00072 Response regulator receiver domain AL539_RS20520 PF01627 Hpt domain AL539_RS20520 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS20520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS20520 PF00672 HAMP domain AL539_RS20525 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_RS20525 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_RS20545 PF03466 LysR substrate binding domain AL539_RS20545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS20560 PF13520 Amino acid permease AL539_RS20565 PF00155 Aminotransferase class I and II AL539_RS20565 PF00392 Bacterial regulatory proteins, gntR family AL539_RS20575 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS20575 PF00672 HAMP domain AL539_RS20575 PF16527 Two-component sensor protein CpxA, periplasmic domain AL539_RS20575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS20580 PF00486 Transcriptional regulatory protein, C terminal AL539_RS20580 PF00072 Response regulator receiver domain AL539_RS20600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL539_RS20600 PF12833 Helix-turn-helix domain AL539_RS20610 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS20610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS20615 PF03109 ABC1 family AL539_RS20620 PF01769 Divalent cation transporter AL539_RS20620 PF00571 CBS domain AL539_RS20620 PF03448 MgtE intracellular N domain AL539_RS20625 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL539_RS20630 PF07969 Amidohydrolase family AL539_RS20635 PF01966 HD domain AL539_RS20650 PF07690 Major Facilitator Superfamily AL539_RS20660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL539_RS20665 PF00255 Glutathione peroxidase AL539_RS20680 PF01323 DSBA-like thioredoxin domain AL539_RS20695 PF00486 Transcriptional regulatory protein, C terminal AL539_RS20695 PF00072 Response regulator receiver domain AL539_RS20700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS20700 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS20700 PF16527 Two-component sensor protein CpxA, periplasmic domain AL539_RS20700 PF00672 HAMP domain AL539_RS20710 PF01219 Prokaryotic diacylglycerol kinase AL539_RS20715 PF00884 Sulfatase AL539_RS20715 PF08019 Phosphoethanolamine transferase EptA/EptB AL539_RS20720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL539_RS20735 PF01734 Patatin-like phospholipase AL539_RS20740 PF02678 Pirin AL539_RS20740 PF05726 Pirin C-terminal cupin domain AL539_RS20745 PF00313 'Cold-shock' DNA-binding domain AL539_RS20760 PF00962 Adenosine/AMP deaminase AL539_RS20765 PF00462 Glutaredoxin AL539_RS20765 PF08534 Redoxin AL539_RS20775 PF00768 D-alanyl-D-alanine carboxypeptidase AL539_RS20775 PF07943 Penicillin-binding protein 5, C-terminal domain AL539_RS20785 PF02798 Glutathione S-transferase, N-terminal domain AL539_RS20795 PF08244 Glycosyl hydrolases family 32 C terminal AL539_RS20795 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL539_RS20800 PF00294 pfkB family carbohydrate kinase AL539_RS20805 PF00367 phosphotransferase system, EIIB AL539_RS20805 PF02378 Phosphotransferase system, EIIC AL539_RS20810 PF00356 Bacterial regulatory proteins, lacI family AL539_RS20815 PF02264 LamB porin AL539_RS20815 PF11471 Maltoporin periplasmic N-terminal extension AL539_RS20865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS20865 PF03466 LysR substrate binding domain AL539_RS20870 PF12833 Helix-turn-helix domain AL539_RS20870 PF01497 Periplasmic binding protein AL539_RS20875 PF00155 Aminotransferase class I and II AL539_RS20905 PF00270 DEAD/DEAH box helicase AL539_RS20905 PF00271 Helicase conserved C-terminal domain AL539_RS20915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS20915 PF03466 LysR substrate binding domain AL539_RS20920 PF03466 LysR substrate binding domain AL539_RS20920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS20930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_RS20935 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS20935 PF00107 Zinc-binding dehydrogenase AL539_RS20960 PF01321 Creatinase/Prolidase N-terminal domain AL539_RS20960 PF00557 Metallopeptidase family M24 AL539_RS20965 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL539_RS20970 PF01037 Lrp/AsnC ligand binding domain AL539_RS20975 PF00171 Aldehyde dehydrogenase family AL539_RS20980 PF00202 Aminotransferase class-III AL539_RS20985 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL539_RS21000 PF03466 LysR substrate binding domain AL539_RS21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21005 PF00709 Adenylosuccinate synthetase AL539_RS21010 PF17763 Glutaminase/Asparaginase C-terminal domain AL539_RS21010 PF00710 Asparaginase, N-terminal AL539_RS21015 PF03618 Kinase/pyrophosphorylase AL539_RS21020 PF00391 PEP-utilising enzyme, mobile domain AL539_RS21020 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_RS21020 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL539_RS21030 PF00196 Bacterial regulatory proteins, luxR family AL539_RS21030 PF00072 Response regulator receiver domain AL539_RS21035 PF00579 tRNA synthetases class I (W and Y) AL539_RS21040 PF13416 Bacterial extracellular solute-binding protein AL539_RS21055 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL539_RS21055 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL539_RS21055 PF00703 Glycosyl hydrolases family 2 AL539_RS21055 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL539_RS21060 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS21065 PF00392 Bacterial regulatory proteins, gntR family AL539_RS21065 PF07702 UTRA domain AL539_RS21090 PF08402 TOBE domain AL539_RS21090 PF00005 ABC transporter AL539_RS21110 PF00873 AcrB/AcrD/AcrF family AL539_RS21130 PF00873 AcrB/AcrD/AcrF family AL539_RS21140 PF13091 PLD-like domain AL539_RS21145 PF00398 Ribosomal RNA adenine dimethylase AL539_RS21165 PF09278 MerR, DNA binding AL539_RS21165 PF00376 MerR family regulatory protein AL539_RS21180 PF03466 LysR substrate binding domain AL539_RS21180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21190 PF13378 Enolase C-terminal domain-like AL539_RS21190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL539_RS21200 PF14492 Elongation Factor G, domain II AL539_RS21200 PF03764 Elongation factor G, domain IV AL539_RS21200 PF00009 Elongation factor Tu GTP binding domain AL539_RS21200 PF03144 Elongation factor Tu domain 2 AL539_RS21200 PF00679 Elongation factor G C-terminus AL539_RS21225 PF02001 Protein of unknown function DUF134 AL539_RS21235 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS21240 PF00571 CBS domain AL539_RS21240 PF00005 ABC transporter AL539_RS21245 PF17185 NlpE C-terminal OB domain AL539_RS21245 PF04170 NlpE N-terminal domain AL539_RS21250 PF06629 MltA-interacting protein MipA AL539_RS21265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21265 PF03466 LysR substrate binding domain AL539_RS21290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL539_RS21290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL539_RS21300 PF00857 Isochorismatase family AL539_RS21315 PF08220 DeoR-like helix-turn-helix domain AL539_RS21315 PF00455 DeoR C terminal sensor domain AL539_RS21320 PF01641 SelR domain AL539_RS21320 PF01625 Peptide methionine sulfoxide reductase AL539_RS21325 PF03060 Nitronate monooxygenase AL539_RS21330 PF13520 Amino acid permease AL539_RS21335 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL539_RS21340 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL539_RS21345 PF12833 Helix-turn-helix domain AL539_RS21350 PF00440 Bacterial regulatory proteins, tetR family AL539_RS21350 PF08359 YsiA-like protein, C-terminal region AL539_RS21365 PF03466 LysR substrate binding domain AL539_RS21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21370 PF01810 LysE type translocator AL539_RS21380 PF00118 TCP-1/cpn60 chaperonin family AL539_RS21385 PF00166 Chaperonin 10 Kd subunit AL539_RS21390 PF00581 Rhodanese-like domain AL539_RS21405 PF01070 FMN-dependent dehydrogenase AL539_RS21425 PF00669 Bacterial flagellin N-terminal helical region AL539_RS21430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS21430 PF00460 Flagella basal body rod protein AL539_RS21435 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL539_RS21435 PF10135 Rod binding protein AL539_RS21440 PF02119 Flagellar P-ring protein AL539_RS21445 PF02107 Flagellar L-ring protein AL539_RS21450 PF00460 Flagella basal body rod protein AL539_RS21450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS21455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS21455 PF00460 Flagella basal body rod protein AL539_RS21460 PF00460 Flagella basal body rod protein AL539_RS21460 PF07559 Flagellar basal body protein FlaE AL539_RS21460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS21465 PF03963 Flagellar hook capping protein - N-terminal region AL539_RS21465 PF13860 FlgD Ig-like domain AL539_RS21465 PF13861 FlgD Tudor-like domain AL539_RS21470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_RS21470 PF00460 Flagella basal body rod protein AL539_RS21475 PF00460 Flagella basal body rod protein AL539_RS21495 PF01464 Transglycosylase SLT domain AL539_RS21500 PF08264 Anticodon-binding domain of tRNA AL539_RS21500 PF00133 tRNA synthetases class I (I, L, M and V) AL539_RS21520 PF03313 Serine dehydratase alpha chain AL539_RS21520 PF03315 Serine dehydratase beta chain AL539_RS21530 PF03466 LysR substrate binding domain AL539_RS21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21535 PF03466 LysR substrate binding domain AL539_RS21540 PF01389 OmpA-like transmembrane domain AL539_RS21540 PF00691 OmpA family AL539_RS21545 PF00246 Zinc carboxypeptidase AL539_RS21545 PF18027 Cytosolic carboxypeptidase N-terminal domain AL539_RS21550 PF01266 FAD dependent oxidoreductase AL539_RS21560 PF04393 Protein of unknown function (DUF535) AL539_RS21575 PF00392 Bacterial regulatory proteins, gntR family AL539_RS21575 PF07702 UTRA domain AL539_RS21580 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS21585 PF00005 ABC transporter AL539_RS21595 PF00266 Aminotransferase class-V AL539_RS21600 PF00202 Aminotransferase class-III AL539_RS21605 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS21615 PF05922 Peptidase inhibitor I9 AL539_RS21615 PF00082 Subtilase family AL539_RS21620 PF00657 GDSL-like Lipase/Acylhydrolase AL539_RS21625 PF00440 Bacterial regulatory proteins, tetR family AL539_RS21635 PF02321 Outer membrane efflux protein AL539_RS21640 PF00005 ABC transporter AL539_RS21640 PF12704 MacB-like periplasmic core domain AL539_RS21640 PF02687 FtsX-like permease family AL539_RS21650 PF13737 Transposase DDE domain AL539_RS21660 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_RS21665 PF00194 Eukaryotic-type carbonic anhydrase AL539_RS21670 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL539_RS21685 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS21690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21690 PF03466 LysR substrate binding domain AL539_RS21725 PF12464 Maltose acetyltransferase AL539_RS21725 PF14602 Hexapeptide repeat of succinyl-transferase AL539_RS21730 PF02566 OsmC-like protein AL539_RS21735 PF01641 SelR domain AL539_RS21735 PF01625 Peptide methionine sulfoxide reductase AL539_RS21750 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL539_RS21755 PF03441 FAD binding domain of DNA photolyase AL539_RS21755 PF00875 DNA photolyase AL539_RS21760 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS21775 PF03707 Bacterial signalling protein N terminal repeat AL539_RS21775 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS21775 PF00563 EAL domain AL539_RS21790 PF01773 Na+ dependent nucleoside transporter N-terminus AL539_RS21790 PF07662 Na+ dependent nucleoside transporter C-terminus AL539_RS21790 PF07670 Nucleoside recognition AL539_RS21810 PF01212 Beta-eliminating lyase AL539_RS21815 PF03116 NQR2, RnfD, RnfE family AL539_RS21820 PF01654 Cytochrome bd terminal oxidase subunit I AL539_RS21825 PF02322 Cytochrome bd terminal oxidase subunit II AL539_RS21840 PF01266 FAD dependent oxidoreductase AL539_RS21860 PF05525 Branched-chain amino acid transport protein AL539_RS21865 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS21870 PF00072 Response regulator receiver domain AL539_RS21870 PF00158 Sigma-54 interaction domain AL539_RS21870 PF02954 Bacterial regulatory protein, Fis family AL539_RS21875 PF02743 Cache domain AL539_RS21875 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS21875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS21880 PF00232 Glycosyl hydrolase family 1 AL539_RS21895 PF03466 LysR substrate binding domain AL539_RS21895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS21905 PF12706 Beta-lactamase superfamily domain AL539_RS21920 PF18030 RimK PreATP-grasp domain AL539_RS21920 PF08443 RimK-like ATP-grasp domain AL539_RS21925 PF18030 RimK PreATP-grasp domain AL539_RS21925 PF08443 RimK-like ATP-grasp domain AL539_RS21930 PF00753 Metallo-beta-lactamase superfamily AL539_RS21935 PF17944 Arginine decarboxylase C-terminal helical extension AL539_RS21935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL539_RS21935 PF17810 Arginine decarboxylase helical bundle domain AL539_RS21940 PF00491 Arginase family AL539_RS21945 PF07690 Major Facilitator Superfamily AL539_RS21950 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_RS21950 PF00326 Prolyl oligopeptidase family AL539_RS21965 PF00950 ABC 3 transport family AL539_RS21970 PF00005 ABC transporter AL539_RS21975 PF01297 Zinc-uptake complex component A periplasmic AL539_RS22015 PF02472 Biopolymer transport protein ExbD/TolR AL539_RS22020 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS22025 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS22035 PF07715 TonB-dependent Receptor Plug Domain AL539_RS22035 PF00593 TonB dependent receptor AL539_RS22040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS22040 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS22040 PF16750 Sensor domain of 2-component histidine kinase AL539_RS22040 PF00672 HAMP domain AL539_RS22045 PF00072 Response regulator receiver domain AL539_RS22045 PF00486 Transcriptional regulatory protein, C terminal AL539_RS22050 PF03009 Glycerophosphoryl diester phosphodiesterase family AL539_RS22060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_RS22060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_RS22065 PF10928 Protein of unknown function (DUF2810) AL539_RS22120 PF04013 Putative SAM-dependent RNA methyltransferase AL539_RS22125 PF01523 Putative modulator of DNA gyrase AL539_RS22130 PF01523 Putative modulator of DNA gyrase AL539_RS22135 PF08543 Phosphomethylpyrimidine kinase AL539_RS22140 PF00005 ABC transporter AL539_RS22145 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS22150 PF09084 NMT1/THI5 like AL539_RS22155 PF03070 TENA/THI-4/PQQC family AL539_RS22160 PF02110 Hydroxyethylthiazole kinase family AL539_RS22165 PF02581 Thiamine monophosphate synthase AL539_RS22175 PF18364 Molybdopterin oxidoreductase N-terminal domain AL539_RS22175 PF00384 Molybdopterin oxidoreductase AL539_RS22175 PF01568 Molydopterin dinucleotide binding domain AL539_RS22180 PF03264 NapC/NirT cytochrome c family, N-terminal region AL539_RS22185 PF13302 Acetyltransferase (GNAT) domain AL539_RS22205 PF00583 Acetyltransferase (GNAT) family AL539_RS22225 PF00392 Bacterial regulatory proteins, gntR family AL539_RS22225 PF00155 Aminotransferase class I and II AL539_RS22230 PF02595 Glycerate kinase family AL539_RS22235 PF02447 GntP family permease AL539_RS22240 PF13556 PucR C-terminal helix-turn-helix domain AL539_RS22240 PF05651 Putative sugar diacid recognition AL539_RS22240 PF17853 GGDEF-like domain AL539_RS22275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS22280 PF12706 Beta-lactamase superfamily domain AL539_RS22290 PF07690 Major Facilitator Superfamily AL539_RS22295 PF13533 Biotin-lipoyl like AL539_RS22300 PF03922 OmpW family AL539_RS22305 PF13599 Pentapeptide repeats (9 copies) AL539_RS22325 PF01037 Lrp/AsnC ligand binding domain AL539_RS22330 PF01810 LysE type translocator AL539_RS22335 PF08021 Siderophore-interacting FAD-binding domain AL539_RS22335 PF04954 Siderophore-interacting protein AL539_RS22340 PF03466 LysR substrate binding domain AL539_RS22340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS22345 PF00797 N-acetyltransferase AL539_RS22350 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS22350 PF00107 Zinc-binding dehydrogenase AL539_RS22355 PF00756 Putative esterase AL539_RS22365 PF17152 Periplasmic sensor domain AL539_RS22365 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS22380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS22380 PF03466 LysR substrate binding domain AL539_RS22395 PF00849 RNA pseudouridylate synthase AL539_RS22400 PF01554 MatE AL539_RS22405 PF00563 EAL domain AL539_RS22405 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS22415 PF06865 Pyrimidine/purine nucleoside phosphorylase AL539_RS22430 PF13737 Transposase DDE domain AL539_RS22440 PF12697 Alpha/beta hydrolase family AL539_RS22455 PF03600 Citrate transporter AL539_RS22465 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL539_RS22475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL539_RS22475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL539_RS22480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL539_RS22480 PF02805 Metal binding domain of Ada AL539_RS22480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL539_RS22480 PF12833 Helix-turn-helix domain AL539_RS22490 PF07681 DoxX AL539_RS22495 PF17954 Quercetinase C-terminal cupin domain AL539_RS22495 PF02678 Pirin AL539_RS22500 PF03466 LysR substrate binding domain AL539_RS22500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS22515 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL539_RS22525 PF03616 Sodium/glutamate symporter AL539_RS22530 PF00155 Aminotransferase class I and II AL539_RS22530 PF00392 Bacterial regulatory proteins, gntR family AL539_RS22535 PF00005 ABC transporter AL539_RS22545 PF03616 Sodium/glutamate symporter AL539_RS22565 PF17200 Single Cache domain 2 AL539_RS22565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS22565 PF00672 HAMP domain AL539_RS22570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL539_RS22580 PF04397 LytTr DNA-binding domain AL539_RS22580 PF00072 Response regulator receiver domain AL539_RS22585 PF06580 Histidine kinase AL539_RS22585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS22585 PF13492 GAF domain AL539_RS22585 PF07694 5TMR of 5TMR-LYT AL539_RS22605 PF00005 ABC transporter AL539_RS22615 PF01098 Cell cycle protein AL539_RS22620 PF01709 Transcriptional regulator AL539_RS22630 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS22630 PF00072 Response regulator receiver domain AL539_RS22630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS22630 PF00672 HAMP domain AL539_RS22630 PF17149 Periplasmic sensor domain found in signal transduction proteins AL539_RS22630 PF01627 Hpt domain AL539_RS22640 PF00925 GTP cyclohydrolase II AL539_RS22640 PF08719 Domain of unknown function (DUF1768) AL539_RS22650 PF00005 ABC transporter AL539_RS22650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS22655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS22655 PF00005 ABC transporter AL539_RS22670 PF13614 AAA domain AL539_RS22670 PF18607 ParA helix turn helix domain AL539_RS22675 PF08775 ParB family AL539_RS22675 PF02195 ParB-like nuclease domain AL539_RS22680 PF05127 Helicase AL539_RS22680 PF13718 GNAT acetyltransferase 2 AL539_RS22690 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS22695 PF03466 LysR substrate binding domain AL539_RS22695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS22705 PF00267 Gram-negative porin AL539_RS22710 PF00367 phosphotransferase system, EIIB AL539_RS22710 PF02378 Phosphotransferase system, EIIC AL539_RS22715 PF01380 SIS domain AL539_RS22725 PF01418 Helix-turn-helix domain, rpiR family AL539_RS22725 PF01380 SIS domain AL539_RS22730 PF00246 Zinc carboxypeptidase AL539_RS22735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS22740 PF03358 NADPH-dependent FMN reductase AL539_RS22755 PF00664 ABC transporter transmembrane region AL539_RS22755 PF03412 Peptidase C39 family AL539_RS22755 PF00005 ABC transporter AL539_RS22770 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS22775 PF02954 Bacterial regulatory protein, Fis family AL539_RS22775 PF00072 Response regulator receiver domain AL539_RS22775 PF00158 Sigma-54 interaction domain AL539_RS22780 PF02743 Cache domain AL539_RS22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS22780 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS22785 PF01243 Pyridoxamine 5'-phosphate oxidase AL539_RS22785 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL539_RS22795 PF12833 Helix-turn-helix domain AL539_RS22800 PF01619 Proline dehydrogenase AL539_RS22800 PF14850 DNA-binding domain of Proline dehydrogenase AL539_RS22800 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL539_RS22800 PF00171 Aldehyde dehydrogenase family AL539_RS22810 PF00474 Sodium:solute symporter family AL539_RS22840 PF01037 Lrp/AsnC ligand binding domain AL539_RS22850 PF00664 ABC transporter transmembrane region AL539_RS22850 PF00005 ABC transporter AL539_RS22860 PF00270 DEAD/DEAH box helicase AL539_RS22860 PF00271 Helicase conserved C-terminal domain AL539_RS22865 PF03473 MOSC domain AL539_RS22865 PF03475 3-alpha domain AL539_RS22885 PF08281 Sigma-70, region 4 AL539_RS22885 PF04542 Sigma-70 region 2 AL539_RS22890 PF12833 Helix-turn-helix domain AL539_RS22890 PF01965 DJ-1/PfpI family AL539_RS22900 PF03466 LysR substrate binding domain AL539_RS22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS22920 PF13192 Thioredoxin domain AL539_RS22920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS22925 PF00578 AhpC/TSA family AL539_RS22925 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL539_RS22930 PF01047 MarR family AL539_RS22935 PF02566 OsmC-like protein AL539_RS22980 PF02687 FtsX-like permease family AL539_RS22980 PF12704 MacB-like periplasmic core domain AL539_RS22985 PF00005 ABC transporter AL539_RS22995 PF01136 Peptidase family U32 AL539_RS23005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL539_RS23005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL539_RS23010 PF06276 Ferric iron reductase FhuF-like transporter AL539_RS23010 PF04183 IucA / IucC family AL539_RS23020 PF06276 Ferric iron reductase FhuF-like transporter AL539_RS23020 PF04183 IucA / IucC family AL539_RS23025 PF02655 ATP-grasp domain AL539_RS23025 PF00206 Lyase AL539_RS23030 PF00593 TonB dependent receptor AL539_RS23030 PF07715 TonB-dependent Receptor Plug Domain AL539_RS23035 PF00593 TonB dependent receptor AL539_RS23035 PF07660 Secretin and TonB N terminus short domain AL539_RS23035 PF07715 TonB-dependent Receptor Plug Domain AL539_RS23040 PF01497 Periplasmic binding protein AL539_RS23045 PF01032 FecCD transport family AL539_RS23050 PF01032 FecCD transport family AL539_RS23055 PF00005 ABC transporter AL539_RS23060 PF00672 HAMP domain AL539_RS23060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS23060 PF17200 Single Cache domain 2 AL539_RS23065 PF00675 Insulinase (Peptidase family M16) AL539_RS23065 PF05193 Peptidase M16 inactive domain AL539_RS23075 PF04225 Opacity-associated protein A LysM-like domain AL539_RS23075 PF01551 Peptidase family M23 AL539_RS23090 PF07690 Major Facilitator Superfamily AL539_RS23095 PF00239 Resolvase, N terminal domain AL539_RS23095 PF02796 Helix-turn-helix domain of resolvase AL539_RS23100 PF00356 Bacterial regulatory proteins, lacI family AL539_RS23105 PF00474 Sodium:solute symporter family AL539_RS23120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL539_RS23120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL539_RS23130 PF03480 Bacterial extracellular solute-binding protein, family 7 AL539_RS23135 PF00356 Bacterial regulatory proteins, lacI family AL539_RS23140 PF03328 HpcH/HpaI aldolase/citrate lyase family AL539_RS23145 PF00815 Histidinol dehydrogenase AL539_RS23160 PF12697 Alpha/beta hydrolase family AL539_RS23175 PF07690 Major Facilitator Superfamily AL539_RS23185 PF03313 Serine dehydratase alpha chain AL539_RS23185 PF03315 Serine dehydratase beta chain AL539_RS23190 PF00128 Alpha amylase, catalytic domain AL539_RS23190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL539_RS23195 PF02264 LamB porin AL539_RS23210 PF02903 Alpha amylase, N-terminal ig-like domain AL539_RS23210 PF16657 Maltogenic Amylase, C-terminal domain AL539_RS23210 PF00128 Alpha amylase, catalytic domain AL539_RS23215 PF04231 Endonuclease I AL539_RS23220 PF17967 Pullulanase N2 domain AL539_RS23220 PF18494 Pullulanase Ins domain AL539_RS23220 PF03714 Bacterial pullanase-associated domain AL539_RS23220 PF11852 Domain of unknown function (DUF3372) AL539_RS23220 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL539_RS23235 PF08543 Phosphomethylpyrimidine kinase AL539_RS23240 PF00375 Sodium:dicarboxylate symporter family AL539_RS23245 PF03193 RsgA GTPase AL539_RS23250 PF02378 Phosphotransferase system, EIIC AL539_RS23250 PF00367 phosphotransferase system, EIIB AL539_RS23255 PF02630 SCO1/SenC AL539_RS23270 PF00196 Bacterial regulatory proteins, luxR family AL539_RS23270 PF17874 MalT-like TPR region AL539_RS23275 PF00343 Carbohydrate phosphorylase AL539_RS23280 PF02446 4-alpha-glucanotransferase AL539_RS23285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL539_RS23285 PF02806 Alpha amylase, C-terminal all-beta domain AL539_RS23285 PF00128 Alpha amylase, catalytic domain AL539_RS23290 PF00912 Transglycosylase AL539_RS23295 PF00128 Alpha amylase, catalytic domain AL539_RS23310 PF07670 Nucleoside recognition AL539_RS23315 PF07670 Nucleoside recognition AL539_RS23320 PF01546 Peptidase family M20/M25/M40 AL539_RS23320 PF07687 Peptidase dimerisation domain AL539_RS23325 PF06803 Protein of unknown function (DUF1232) AL539_RS23340 PF00375 Sodium:dicarboxylate symporter family AL539_RS23350 PF03466 LysR substrate binding domain AL539_RS23350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS23355 PF08803 Putative mono-oxygenase ydhR AL539_RS23370 PF13737 Transposase DDE domain AL539_RS23380 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL539_RS23385 PF10531 SLBB domain AL539_RS23385 PF02563 Polysaccharide biosynthesis/export protein AL539_RS23385 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL539_RS23390 PF00881 Nitroreductase family AL539_RS23395 PF01914 MarC family integral membrane protein AL539_RS23400 PF01734 Patatin-like phospholipase AL539_RS23405 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL539_RS23405 PF18416 N-acetylglucosamine binding protein domain 2 AL539_RS23410 PF02469 Fasciclin domain AL539_RS23415 PF03441 FAD binding domain of DNA photolyase AL539_RS23415 PF00875 DNA photolyase AL539_RS23425 PF17773 UPF0176 acylphosphatase like domain AL539_RS23425 PF00581 Rhodanese-like domain AL539_RS23430 PF00561 alpha/beta hydrolase fold AL539_RS23435 PF07943 Penicillin-binding protein 5, C-terminal domain AL539_RS23435 PF00768 D-alanyl-D-alanine carboxypeptidase AL539_RS23440 PF00686 Starch binding domain AL539_RS23440 PF00128 Alpha amylase, catalytic domain AL539_RS23445 PF12833 Helix-turn-helix domain AL539_RS23445 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL539_RS23450 PF00881 Nitroreductase family AL539_RS23460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS23460 PF03466 LysR substrate binding domain AL539_RS23465 PF09905 DNA-binding protein VF530 AL539_RS23475 PF00970 Oxidoreductase FAD-binding domain AL539_RS23475 PF00175 Oxidoreductase NAD-binding domain AL539_RS23485 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL539_RS23490 PF01594 AI-2E family transporter AL539_RS23500 PF13533 Biotin-lipoyl like AL539_RS23525 PF00892 EamA-like transporter family AL539_RS23530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS23530 PF03466 LysR substrate binding domain AL539_RS23535 PF07690 Major Facilitator Superfamily AL539_RS23545 PF00583 Acetyltransferase (GNAT) family AL539_RS23555 PF00486 Transcriptional regulatory protein, C terminal AL539_RS23555 PF00072 Response regulator receiver domain AL539_RS23560 PF00672 HAMP domain AL539_RS23560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS23560 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS23575 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL539_RS23580 PF04055 Radical SAM superfamily AL539_RS23585 PF02901 Pyruvate formate lyase-like AL539_RS23585 PF01228 Glycine radical AL539_RS23605 PF08000 Bacterial PH domain AL539_RS23620 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL539_RS23620 PF00691 OmpA family AL539_RS23625 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS23630 PF04545 Sigma-70, region 4 AL539_RS23630 PF04542 Sigma-70 region 2 AL539_RS23635 PF03748 Flagellar basal body-associated protein FliL AL539_RS23650 PF02561 Flagellar protein FliS AL539_RS23655 PF02465 Flagellar hook-associated protein 2 N-terminus AL539_RS23655 PF07196 Flagellin hook IN motif AL539_RS23655 PF07195 Flagellar hook-associated protein 2 C-terminus AL539_RS23665 PF00700 Bacterial flagellin C-terminal helical region AL539_RS23665 PF00669 Bacterial flagellin N-terminal helical region AL539_RS23675 PF00771 FHIPEP family AL539_RS23680 PF01312 FlhB HrpN YscU SpaS Family AL539_RS23685 PF01311 Bacterial export proteins, family 1 AL539_RS23690 PF01313 Bacterial export proteins, family 3 AL539_RS23695 PF00813 FliP family AL539_RS23700 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_RS23715 PF00072 Response regulator receiver domain AL539_RS23715 PF02954 Bacterial regulatory protein, Fis family AL539_RS23715 PF00158 Sigma-54 interaction domain AL539_RS23720 PF02049 Flagellar hook-basal body complex protein FliE AL539_RS23725 PF01514 Secretory protein of YscJ/FliF family AL539_RS23725 PF08345 Flagellar M-ring protein C-terminal AL539_RS23730 PF14842 FliG N-terminal domain AL539_RS23730 PF14841 FliG middle domain AL539_RS23730 PF01706 FliG C-terminal domain AL539_RS23740 PF18269 T3SS EscN ATPase C-terminal domain AL539_RS23740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_RS23755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS23755 PF03466 LysR substrate binding domain AL539_RS23790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_RS23795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS23795 PF03466 LysR substrate binding domain AL539_RS23815 PF00486 Transcriptional regulatory protein, C terminal AL539_RS23815 PF00072 Response regulator receiver domain AL539_RS23820 PF00072 Response regulator receiver domain AL539_RS23820 PF13426 PAS domain AL539_RS23820 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS23820 PF08448 PAS fold AL539_RS23820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS23825 PF00080 Copper/zinc superoxide dismutase (SODC) AL539_RS23840 PF03707 Bacterial signalling protein N terminal repeat AL539_RS23840 PF13188 PAS domain AL539_RS23840 PF00563 EAL domain AL539_RS23840 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS23845 PF00155 Aminotransferase class I and II AL539_RS23850 PF08240 Alcohol dehydrogenase GroES-like domain AL539_RS23850 PF00107 Zinc-binding dehydrogenase AL539_RS23880 PF00194 Eukaryotic-type carbonic anhydrase AL539_RS23885 PF00924 Mechanosensitive ion channel AL539_RS23895 PF01070 FMN-dependent dehydrogenase AL539_RS23900 PF02652 L-lactate permease AL539_RS23905 PF03466 LysR substrate binding domain AL539_RS23905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS23910 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_RS23910 PF00326 Prolyl oligopeptidase family AL539_RS23915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS23915 PF00005 ABC transporter AL539_RS23925 PF05362 Lon protease (S16) C-terminal proteolytic domain AL539_RS23925 PF13654 AAA domain AL539_RS23930 PF00672 HAMP domain AL539_RS23930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS23930 PF17200 Single Cache domain 2 AL539_RS23935 PF13609 Gram-negative porin AL539_RS23940 PF07238 PilZ domain AL539_RS23940 PF12945 Flagellar protein YcgR AL539_RS23955 PF00583 Acetyltransferase (GNAT) family AL539_RS23960 PF12838 4Fe-4S dicluster domain AL539_RS23960 PF12800 4Fe-4S binding domain AL539_RS23965 PF13237 4Fe-4S dicluster domain AL539_RS23965 PF12801 4Fe-4S binding domain AL539_RS23985 PF12558 ATP-binding cassette cobalt transporter AL539_RS23985 PF00005 ABC transporter AL539_RS23990 PF07155 ECF-type riboflavin transporter, S component AL539_RS23995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS23995 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS24000 PF11742 Protein of unknown function (DUF3302) AL539_RS24005 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS24020 PF01048 Phosphorylase superfamily AL539_RS24025 PF08349 Protein of unknown function (DUF1722) AL539_RS24030 PF13411 MerR HTH family regulatory protein AL539_RS24035 PF00875 DNA photolyase AL539_RS24035 PF03441 FAD binding domain of DNA photolyase AL539_RS24040 PF03734 L,D-transpeptidase catalytic domain AL539_RS24040 PF01476 LysM domain AL539_RS24040 PF17969 L,D-transpeptidase C-terminal domain AL539_RS24050 PF00270 DEAD/DEAH box helicase AL539_RS24050 PF00271 Helicase conserved C-terminal domain AL539_RS24055 PF00326 Prolyl oligopeptidase family AL539_RS24055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_RS24060 PF00593 TonB dependent receptor AL539_RS24060 PF07715 TonB-dependent Receptor Plug Domain AL539_RS24080 PF00672 HAMP domain AL539_RS24080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS24085 PF12849 PBP superfamily domain AL539_RS24090 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS24095 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS24100 PF00005 ABC transporter AL539_RS24115 PF13519 von Willebrand factor type A domain AL539_RS24120 PF13519 von Willebrand factor type A domain AL539_RS24130 PF01882 Protein of unknown function DUF58 AL539_RS24135 PF17863 AAA lid domain AL539_RS24135 PF07726 ATPase family associated with various cellular activities (AAA) AL539_RS24140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS24140 PF00672 HAMP domain AL539_RS24140 PF02743 Cache domain AL539_RS24150 PF00196 Bacterial regulatory proteins, luxR family AL539_RS24155 PF00196 Bacterial regulatory proteins, luxR family AL539_RS24165 PF00664 ABC transporter transmembrane region AL539_RS24165 PF00005 ABC transporter AL539_RS24170 PF00529 HlyD membrane-fusion protein of T1SS AL539_RS24180 PF01032 FecCD transport family AL539_RS24185 PF01497 Periplasmic binding protein AL539_RS24190 PF00005 ABC transporter AL539_RS24200 PF00005 ABC transporter AL539_RS24200 PF00664 ABC transporter transmembrane region AL539_RS24205 PF02702 Osmosensitive K+ channel His kinase sensor domain AL539_RS24205 PF00512 His Kinase A (phospho-acceptor) domain AL539_RS24205 PF13493 Domain of unknown function (DUF4118) AL539_RS24205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS24210 PF00072 Response regulator receiver domain AL539_RS24210 PF00486 Transcriptional regulatory protein, C terminal AL539_RS24215 PF02080 TrkA-C domain AL539_RS24215 PF02254 TrkA-N domain AL539_RS24220 PF02386 Cation transport protein AL539_RS24225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS24225 PF03466 LysR substrate binding domain AL539_RS24230 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS24235 PF00355 Rieske [2Fe-2S] domain AL539_RS24235 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL539_RS24240 PF00171 Aldehyde dehydrogenase family AL539_RS24245 PF18113 Rubredoxin binding C-terminal domain AL539_RS24245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS24250 PF01266 FAD dependent oxidoreductase AL539_RS24260 PF00127 Copper binding proteins, plastocyanin/azurin family AL539_RS24265 PF13419 Haloacid dehalogenase-like hydrolase AL539_RS24275 PF00158 Sigma-54 interaction domain AL539_RS24275 PF01590 GAF domain AL539_RS24280 PF00258 Flavodoxin AL539_RS24280 PF00753 Metallo-beta-lactamase superfamily AL539_RS24280 PF00301 Rubredoxin AL539_RS24285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS24285 PF18113 Rubredoxin binding C-terminal domain AL539_RS24295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_RS24295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_RS24300 PF00199 Catalase AL539_RS24300 PF06628 Catalase-related immune-responsive AL539_RS24305 PF13417 Glutathione S-transferase, N-terminal domain AL539_RS24310 PF16884 N-terminal domain of oxidoreductase AL539_RS24310 PF00107 Zinc-binding dehydrogenase AL539_RS24315 PF16925 Tetracyclin repressor-like, C-terminal domain AL539_RS24315 PF00440 Bacterial regulatory proteins, tetR family AL539_RS24320 PF04266 ASCH domain AL539_RS24350 PF13439 Glycosyltransferase Family 4 AL539_RS24350 PF00534 Glycosyl transferases group 1 AL539_RS24360 PF13807 G-rich domain on putative tyrosine kinase AL539_RS24360 PF13614 AAA domain AL539_RS24360 PF02706 Chain length determinant protein AL539_RS24375 PF02397 Bacterial sugar transferase AL539_RS24380 PF00005 ABC transporter AL539_RS24380 PF08402 TOBE domain AL539_RS24385 PF01547 Bacterial extracellular solute-binding protein AL539_RS24390 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS24390 PF14785 Maltose transport system permease protein MalF P2 domain AL539_RS24395 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS24420 PF00005 ABC transporter AL539_RS24420 PF00664 ABC transporter transmembrane region AL539_RS24425 PF00664 ABC transporter transmembrane region AL539_RS24425 PF08021 Siderophore-interacting FAD-binding domain AL539_RS24425 PF04954 Siderophore-interacting protein AL539_RS24425 PF00005 ABC transporter AL539_RS24430 PF07715 TonB-dependent Receptor Plug Domain AL539_RS24430 PF00593 TonB dependent receptor AL539_RS24435 PF01497 Periplasmic binding protein AL539_RS24440 PF01032 FecCD transport family AL539_RS24445 PF01032 FecCD transport family AL539_RS24455 PF05661 Protein of unknown function (DUF808) AL539_RS24460 PF01979 Amidohydrolase family AL539_RS24470 PF01679 Proteolipid membrane potential modulator AL539_RS24475 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS24475 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_RS24475 PF03473 MOSC domain AL539_RS24475 PF03476 MOSC N-terminal beta barrel domain AL539_RS24475 PF03473 MOSC domain AL539_RS24475 PF03476 MOSC N-terminal beta barrel domain AL539_RS24480 PF02540 NAD synthase AL539_RS24485 PF01467 Cytidylyltransferase-like AL539_RS24525 PF00005 ABC transporter AL539_RS24530 PF01032 FecCD transport family AL539_RS24540 PF02472 Biopolymer transport protein ExbD/TolR AL539_RS24545 PF01618 MotA/TolQ/ExbB proton channel family AL539_RS24550 PF03544 Gram-negative bacterial TonB protein C-terminal AL539_RS24555 PF04055 Radical SAM superfamily AL539_RS24560 PF06228 Haem utilisation ChuX/HutX AL539_RS24565 PF01243 Pyridoxamine 5'-phosphate oxidase AL539_RS24575 PF01584 CheW-like domain AL539_RS24575 PF00072 Response regulator receiver domain AL539_RS24585 PF01554 MatE AL539_RS24590 PF00005 ABC transporter AL539_RS24590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS24595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_RS24595 PF00005 ABC transporter AL539_RS24600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_RS24605 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS24610 PF00455 DeoR C terminal sensor domain AL539_RS24610 PF08220 DeoR-like helix-turn-helix domain AL539_RS24615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_RS24615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_RS24620 PF07005 Sugar-binding N-terminal domain AL539_RS24620 PF17042 Nucleotide-binding C-terminal domain AL539_RS24625 PF00596 Class II Aldolase and Adducin N-terminal domain AL539_RS24630 PF01261 Xylose isomerase-like TIM barrel AL539_RS24635 PF01370 NAD dependent epimerase/dehydratase family AL539_RS24640 PF02447 GntP family permease AL539_RS24645 PF02583 Metal-sensitive transcriptional repressor AL539_RS24650 PF03824 High-affinity nickel-transport protein AL539_RS24660 PF00672 HAMP domain AL539_RS24660 PF02743 Cache domain AL539_RS24660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS24665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS24665 PF03466 LysR substrate binding domain AL539_RS24670 PF01039 Carboxyl transferase domain AL539_RS24670 PF17848 Acetyl-coA carboxylase zinc finger domain AL539_RS24680 PF01752 Collagenase AL539_RS24680 PF04151 Bacterial pre-peptidase C-terminal domain AL539_RS24680 PF08453 Peptidase family M9 N-terminal AL539_RS24690 PF02627 Carboxymuconolactone decarboxylase family AL539_RS24695 PF13411 MerR HTH family regulatory protein AL539_RS24700 PF00128 Alpha amylase, catalytic domain AL539_RS24715 PF00999 Sodium/hydrogen exchanger family AL539_RS24715 PF02254 TrkA-N domain AL539_RS24720 PF02525 Flavodoxin-like fold AL539_RS24725 PF00582 Universal stress protein family AL539_RS24730 PF00005 ABC transporter AL539_RS24730 PF16326 ABC transporter C-terminal domain AL539_RS24730 PF12848 ABC transporter AL539_RS24735 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_RS24735 PF00326 Prolyl oligopeptidase family AL539_RS24745 PF13533 Biotin-lipoyl like AL539_RS24750 PF00873 AcrB/AcrD/AcrF family AL539_RS24755 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_RS24765 PF13302 Acetyltransferase (GNAT) domain AL539_RS24775 PF17151 Periplasmic sensor domain AL539_RS24775 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS24790 PF00873 AcrB/AcrD/AcrF family AL539_RS24795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_RS24810 PF00384 Molybdopterin oxidoreductase AL539_RS24810 PF01568 Molydopterin dinucleotide binding domain AL539_RS24810 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL539_RS24810 PF12838 4Fe-4S dicluster domain AL539_RS24810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS24825 PF00005 ABC transporter AL539_RS24835 PF02567 Phenazine biosynthesis-like protein AL539_RS24840 PF01161 Phosphatidylethanolamine-binding protein AL539_RS24850 PF01758 Sodium Bile acid symporter family AL539_RS24865 PF01638 HxlR-like helix-turn-helix AL539_RS24875 PF13737 Transposase DDE domain AL539_RS24890 PF03466 LysR substrate binding domain AL539_RS24890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS24895 PF00248 Aldo/keto reductase family AL539_RS24900 PF03928 Haem-degrading AL539_RS24920 PF03222 Tryptophan/tyrosine permease family AL539_RS24930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS24930 PF02743 Cache domain AL539_RS24930 PF00672 HAMP domain AL539_RS24935 PF07670 Nucleoside recognition AL539_RS24960 PF01551 Peptidase family M23 AL539_RS24960 PF01476 LysM domain AL539_RS24960 PF08525 Opacity-associated protein A N-terminal motif AL539_RS24965 PF00563 EAL domain AL539_RS24965 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS24965 PF08447 PAS fold AL539_RS24965 PF08448 PAS fold AL539_RS24970 PF03466 LysR substrate binding domain AL539_RS24970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS24975 PF07690 Major Facilitator Superfamily AL539_RS24990 PF00462 Glutaredoxin AL539_RS24995 PF00892 EamA-like transporter family AL539_RS25010 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL539_RS25030 PF01810 LysE type translocator AL539_RS25040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_RS25040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_RS25040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_RS25040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_RS25045 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL539_RS25045 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL539_RS25050 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL539_RS25055 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL539_RS25060 PF00510 Cytochrome c oxidase subunit III AL539_RS25080 PF02628 Cytochrome oxidase assembly protein AL539_RS25085 PF01040 UbiA prenyltransferase family AL539_RS25090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_RS25090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL539_RS25100 PF00691 OmpA family AL539_RS25100 PF05736 OprF membrane domain AL539_RS25120 PF00313 'Cold-shock' DNA-binding domain AL539_RS25125 PF03889 Alternative ribosome-rescue factor A AL539_RS25130 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS25135 PF04542 Sigma-70 region 2 AL539_RS25135 PF04539 Sigma-70 region 3 AL539_RS25135 PF04545 Sigma-70, region 4 AL539_RS25135 PF00140 Sigma-70 factor, region 1.2 AL539_RS25145 PF00664 ABC transporter transmembrane region AL539_RS25145 PF00005 ABC transporter AL539_RS25150 PF00664 ABC transporter transmembrane region AL539_RS25150 PF00005 ABC transporter AL539_RS25155 PF02321 Outer membrane efflux protein AL539_RS25160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_RS25160 PF00072 Response regulator receiver domain AL539_RS25165 PF13533 Biotin-lipoyl like AL539_RS25185 PF12729 Four helix bundle sensory module for signal transduction AL539_RS25185 PF00672 HAMP domain AL539_RS25185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS25190 PF00210 Ferritin-like domain AL539_RS25200 PF07995 Glucose / Sorbosone dehydrogenase AL539_RS25205 PF00465 Iron-containing alcohol dehydrogenase AL539_RS25215 PF00892 EamA-like transporter family AL539_RS25225 PF03466 LysR substrate binding domain AL539_RS25225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS25235 PF13193 AMP-binding enzyme C-terminal domain AL539_RS25235 PF00501 AMP-binding enzyme AL539_RS25240 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL539_RS25245 PF01329 Pterin 4 alpha carbinolamine dehydratase AL539_RS25265 PF12843 Putative quorum-sensing-regulated virulence factor AL539_RS25305 PF18766 SWI2/SNF2 ATPase AL539_RS25305 PF11867 Domain of unknown function (DUF3387) AL539_RS25305 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_RS25320 PF01420 Type I restriction modification DNA specificity domain AL539_RS25325 PF02384 N-6 DNA Methylase AL539_RS25330 PF02899 Phage integrase, N-terminal SAM-like domain AL539_RS25330 PF00589 Phage integrase family AL539_RS25365 PF01906 Putative heavy-metal-binding AL539_RS25445 PF09905 DNA-binding protein VF530 AL539_RS25455 PF00291 Pyridoxal-phosphate dependent enzyme AL539_RS25465 PF00313 'Cold-shock' DNA-binding domain AL539_RS25475 PF01470 Pyroglutamyl peptidase AL539_RS25485 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25485 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_RS25490 PF00271 Helicase conserved C-terminal domain AL539_RS25490 PF00270 DEAD/DEAH box helicase AL539_RS25510 PF00563 EAL domain AL539_RS25510 PF12792 CSS motif domain associated with EAL AL539_RS25515 PF00005 ABC transporter AL539_RS25520 PF00672 HAMP domain AL539_RS25520 PF12729 Four helix bundle sensory module for signal transduction AL539_RS25520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS25530 PF01575 MaoC like domain AL539_RS25535 PF12849 PBP superfamily domain AL539_RS25545 PF12833 Helix-turn-helix domain AL539_RS25550 PF00575 S1 RNA binding domain AL539_RS25550 PF08206 Ribonuclease B OB domain AL539_RS25550 PF00773 RNB domain AL539_RS25555 PF00270 DEAD/DEAH box helicase AL539_RS25555 PF00271 Helicase conserved C-terminal domain AL539_RS25555 PF03880 DbpA RNA binding domain AL539_RS25570 PF00871 Acetokinase family AL539_RS25575 PF03466 LysR substrate binding domain AL539_RS25575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS25580 PF12146 Serine aminopeptidase, S33 AL539_RS25585 PF12146 Serine aminopeptidase, S33 AL539_RS25600 PF01925 Sulfite exporter TauE/SafE AL539_RS25615 PF01475 Ferric uptake regulator family AL539_RS25620 PF01979 Amidohydrolase family AL539_RS25625 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_RS25630 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25630 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_RS25635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL539_RS25640 PF01476 LysM domain AL539_RS25640 PF08525 Opacity-associated protein A N-terminal motif AL539_RS25640 PF01551 Peptidase family M23 AL539_RS25650 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_RS25650 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25655 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_RS25655 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_RS25660 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL539_RS25670 PF01914 MarC family integral membrane protein AL539_RS25685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_RS25685 PF08447 PAS fold AL539_RS25685 PF13426 PAS domain AL539_RS25695 PF00682 HMGL-like AL539_RS25700 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS25705 PF01039 Carboxyl transferase domain AL539_RS25710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_RS25710 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_RS25710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_RS25715 PF09278 MerR, DNA binding AL539_RS25715 PF00376 MerR family regulatory protein AL539_RS25720 PF00108 Thiolase, N-terminal domain AL539_RS25720 PF02803 Thiolase, C-terminal domain AL539_RS25725 PF00171 Aldehyde dehydrogenase family AL539_RS25730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_RS25730 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_RS25730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_RS25735 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS25740 PF00378 Enoyl-CoA hydratase/isomerase AL539_RS25745 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_RS25745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_RS25755 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL539_RS25755 PF06481 COX Aromatic Rich Motif AL539_RS25760 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL539_RS25765 PF00510 Cytochrome c oxidase subunit III AL539_RS25775 PF01040 UbiA prenyltransferase family AL539_RS25780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS25780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_RS25795 PF00171 Aldehyde dehydrogenase family AL539_RS25805 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_RS25835 PF00005 ABC transporter AL539_RS25840 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_RS25845 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS25850 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS25860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS25860 PF03466 LysR substrate binding domain AL539_RS25865 PF13417 Glutathione S-transferase, N-terminal domain AL539_RS25865 PF00043 Glutathione S-transferase, C-terminal domain AL539_RS25875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_RS25875 PF03466 LysR substrate binding domain AL539_RS25885 PF00766 Electron transfer flavoprotein FAD-binding domain AL539_RS25885 PF01012 Electron transfer flavoprotein domain AL539_RS25890 PF02817 e3 binding domain AL539_RS25890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL539_RS25890 PF00364 Biotin-requiring enzyme AL539_RS25895 PF02779 Transketolase, pyrimidine binding domain AL539_RS25895 PF02780 Transketolase, C-terminal domain AL539_RS25900 PF00676 Dehydrogenase E1 component AL539_RS25915 PF00012 Hsp70 protein AL539_RS25920 PF04314 Copper chaperone PCu(A)C AL539_RS25955 PF00486 Transcriptional regulatory protein, C terminal AL539_RS25955 PF00072 Response regulator receiver domain AL539_RS25975 PF01483 Proprotein convertase P-domain AL539_RS25975 PF00082 Subtilase family AL539_RS25985 PF00990 Diguanylate cyclase, GGDEF domain AL539_RS25995 PF03222 Tryptophan/tyrosine permease family AL539_RS26005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_RS26005 PF00384 Molybdopterin oxidoreductase AL539_RS26005 PF01568 Molydopterin dinucleotide binding domain AL539_RS26010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_RS26010 PF10414 Sirohaem synthase dimerisation region AL539_RS26010 PF14824 Sirohaem biosynthesis protein central AL539_RS26015 PF02885 Glycosyl transferase family, helical bundle domain AL539_RS26015 PF00591 Glycosyl transferase family, a/b domain AL539_RS26020 PF01738 Dienelactone hydrolase family AL539_RS26025 PF00072 Response regulator receiver domain AL539_RS26025 PF03861 ANTAR domain AL539_RS26035 PF00005 ABC transporter AL539_RS26050 PF00528 Binding-protein-dependent transport system inner membrane component AL539_RS26055 PF00005 ABC transporter AL539_RS26060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL539_RS26060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_RS26060 PF13806 Rieske-like [2Fe-2S] domain AL539_RS26060 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL539_RS26060 PF04324 BFD-like [2Fe-2S] binding domain AL539_RS26060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL539_RS26090 PF00072 Response regulator receiver domain AL539_RS26090 PF00211 Adenylate and Guanylate cyclase catalytic domain AL539_RS26110 PF03793 PASTA domain AL539_RS26110 PF00069 Protein kinase domain